Query 001669
Match_columns 1034
No_of_seqs 393 out of 2112
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 3E-110 7E-115 976.7 53.0 821 17-913 1-855 (913)
2 KOG0243 Kinesin-like protein [ 100.0 7.7E-86 1.7E-90 783.8 81.5 360 7-396 47-420 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 2.8E-89 6E-94 794.4 34.1 365 8-401 3-382 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 2.5E-89 5.4E-94 785.0 30.4 356 7-398 3-367 (574)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 1.3E-83 2.8E-88 714.6 45.9 338 5-380 3-344 (607)
6 PLN03188 kinesin-12 family pro 100.0 8.2E-82 1.8E-86 754.8 38.6 355 7-396 96-462 (1320)
7 KOG0241 Kinesin-like protein [ 100.0 2.2E-78 4.8E-83 688.2 34.6 361 8-398 3-382 (1714)
8 KOG0242 Kinesin-like protein [ 100.0 3.2E-78 6.9E-83 723.2 32.9 349 7-398 4-363 (675)
9 cd01373 KISc_KLP2_like Kinesin 100.0 1.8E-77 4E-82 677.3 35.2 325 10-367 2-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 6.7E-77 1.5E-81 673.0 34.1 322 10-367 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 4.3E-75 9.2E-80 659.5 35.4 326 10-365 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 8.8E-75 1.9E-79 661.5 36.3 337 9-374 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.2E-74 4.8E-79 658.3 36.3 333 9-376 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 2.6E-74 5.5E-79 655.9 36.3 337 9-368 1-341 (341)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 4.6E-73 1E-77 641.6 35.3 323 10-367 2-333 (333)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 7.9E-73 1.7E-77 639.0 36.1 320 9-367 2-325 (325)
17 cd01367 KISc_KIF2_like Kinesin 100.0 4.8E-73 1E-77 637.9 34.1 308 9-365 1-322 (322)
18 cd01376 KISc_KID_like Kinesin 100.0 9.8E-72 2.1E-76 627.1 34.0 308 10-365 1-319 (319)
19 cd01375 KISc_KIF9_like Kinesin 100.0 3.6E-71 7.7E-76 625.9 34.7 319 10-365 1-334 (334)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 4.5E-71 9.7E-76 623.2 34.2 317 10-367 1-321 (321)
21 cd01366 KISc_C_terminal Kinesi 100.0 2.1E-69 4.5E-74 612.6 35.8 321 8-369 1-328 (329)
22 smart00129 KISc Kinesin motor, 100.0 5.9E-69 1.3E-73 611.1 36.0 327 10-374 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 1.1E-69 2.3E-74 646.7 26.4 326 8-374 313-647 (670)
24 KOG0246 Kinesin-like protein [ 100.0 9.1E-68 2E-72 584.7 30.5 326 4-372 203-546 (676)
25 KOG0247 Kinesin-like protein [ 100.0 1.2E-66 2.7E-71 591.9 39.2 333 9-374 31-443 (809)
26 PF00225 Kinesin: Kinesin moto 100.0 3.4E-67 7.3E-72 597.3 27.5 322 16-367 1-335 (335)
27 cd00106 KISc Kinesin motor dom 100.0 4.8E-66 1E-70 586.1 35.2 318 10-365 1-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.2E-59 2.7E-64 559.9 30.8 336 9-391 22-361 (568)
29 cd01363 Motor_domain Myosin an 100.0 4.8E-47 1E-51 394.1 19.9 179 65-346 8-186 (186)
30 KOG0161 Myosin class II heavy 99.9 1.6E-21 3.5E-26 250.4 52.8 471 368-917 826-1303(1930)
31 KOG0161 Myosin class II heavy 99.8 4.9E-15 1.1E-19 191.5 53.6 410 405-912 963-1404(1930)
32 PF01576 Myosin_tail_1: Myosin 99.3 2.9E-13 6.4E-18 170.1 0.0 325 501-912 3-346 (859)
33 PF01576 Myosin_tail_1: Myosin 99.2 5.3E-12 1.2E-16 158.8 0.0 240 646-917 2-245 (859)
34 PRK02224 chromosome segregatio 99.0 8.5E-05 1.8E-09 96.2 57.2 14 86-99 27-40 (880)
35 PRK02224 chromosome segregatio 99.0 0.00022 4.8E-09 92.4 59.9 54 860-913 628-686 (880)
36 KOG4674 Uncharacterized conser 98.9 0.00054 1.2E-08 89.5 58.0 232 526-767 949-1198(1822)
37 PRK03918 chromosome segregatio 98.9 0.0009 1.9E-08 86.8 60.7 17 80-99 24-40 (880)
38 PF07888 CALCOCO1: Calcium bin 98.8 0.00053 1.2E-08 80.5 49.2 55 858-912 409-463 (546)
39 TIGR00606 rad50 rad50. This fa 98.8 0.0017 3.7E-08 87.2 61.1 16 84-99 30-45 (1311)
40 PRK03918 chromosome segregatio 98.8 0.0018 3.9E-08 84.1 58.7 30 638-667 456-485 (880)
41 KOG4674 Uncharacterized conser 98.7 0.0028 6E-08 83.1 53.9 163 500-674 771-938 (1822)
42 KOG4643 Uncharacterized coiled 98.7 0.0028 6.1E-08 77.3 49.9 61 590-650 396-459 (1195)
43 TIGR02168 SMC_prok_B chromosom 98.5 0.019 4.2E-07 76.9 61.9 16 84-99 25-40 (1179)
44 PF07888 CALCOCO1: Calcium bin 98.5 0.0084 1.8E-07 70.7 46.6 32 410-441 161-192 (546)
45 TIGR00606 rad50 rad50. This fa 98.5 0.025 5.5E-07 76.1 58.6 24 499-522 796-819 (1311)
46 TIGR02169 SMC_prok_A chromosom 98.4 0.0083 1.8E-07 80.4 51.2 14 86-99 27-40 (1164)
47 KOG0612 Rho-associated, coiled 98.4 0.0066 1.4E-07 75.9 44.7 72 667-768 668-739 (1317)
48 KOG0994 Extracellular matrix g 98.4 0.0063 1.4E-07 74.8 42.2 81 354-445 1177-1257(1758)
49 TIGR02168 SMC_prok_B chromosom 98.4 0.035 7.5E-07 74.5 61.0 37 727-763 674-711 (1179)
50 COG1196 Smc Chromosome segrega 98.4 0.025 5.4E-07 75.3 52.0 72 860-931 978-1051(1163)
51 TIGR02169 SMC_prok_A chromosom 98.4 0.01 2.2E-07 79.5 48.9 20 502-521 184-203 (1164)
52 PF12128 DUF3584: Protein of u 98.4 0.038 8.2E-07 73.7 59.6 25 676-700 514-538 (1201)
53 KOG4643 Uncharacterized coiled 98.3 0.015 3.2E-07 71.3 43.1 180 576-764 262-450 (1195)
54 PF00038 Filament: Intermediat 98.3 0.0064 1.4E-07 68.9 39.1 99 625-765 207-305 (312)
55 KOG0612 Rho-associated, coiled 98.3 0.028 6.1E-07 70.6 46.5 36 850-885 905-940 (1317)
56 KOG0971 Microtubule-associated 98.3 0.0073 1.6E-07 72.8 39.1 20 678-697 337-356 (1243)
57 KOG0977 Nuclear envelope prote 98.3 0.0036 7.8E-08 73.7 36.5 38 386-435 41-78 (546)
58 PF10174 Cast: RIM-binding pro 98.3 0.035 7.5E-07 69.1 51.4 62 602-663 433-494 (775)
59 PF12128 DUF3584: Protein of u 98.2 0.067 1.4E-06 71.4 61.9 102 795-904 771-872 (1201)
60 KOG0963 Transcription factor/C 98.2 0.029 6.3E-07 66.1 42.8 122 575-696 125-258 (629)
61 KOG4673 Transcription factor T 98.2 0.031 6.7E-07 65.8 50.0 92 602-696 544-635 (961)
62 COG1196 Smc Chromosome segrega 98.2 0.038 8.2E-07 73.6 47.4 29 68-99 13-41 (1163)
63 PF10174 Cast: RIM-binding pro 98.2 0.054 1.2E-06 67.5 54.5 273 591-913 234-512 (775)
64 PRK01156 chromosome segregatio 98.1 0.082 1.8E-06 68.8 59.3 16 84-99 25-40 (895)
65 PF00038 Filament: Intermediat 98.1 0.036 7.7E-07 62.8 42.0 127 532-675 15-144 (312)
66 KOG0971 Microtubule-associated 98.1 0.073 1.6E-06 64.6 40.2 64 687-765 375-439 (1243)
67 KOG1029 Endocytic adaptor prot 98.0 0.043 9.4E-07 65.4 37.2 52 647-698 471-522 (1118)
68 COG5059 KIP1 Kinesin-like prot 98.0 1.8E-07 4E-12 113.0 -7.4 254 6-306 302-566 (568)
69 KOG0977 Nuclear envelope prote 97.9 0.041 8.8E-07 65.1 35.4 46 630-675 151-196 (546)
70 KOG0964 Structural maintenance 97.9 0.13 2.7E-06 63.4 42.2 228 497-759 186-427 (1200)
71 KOG0976 Rho/Rac1-interacting s 97.9 0.11 2.4E-06 62.2 54.4 35 410-444 89-123 (1265)
72 KOG4673 Transcription factor T 97.9 0.1 2.3E-06 61.6 46.9 37 525-561 399-435 (961)
73 KOG0933 Structural maintenance 97.9 0.18 3.8E-06 62.5 41.6 330 535-901 677-1022(1174)
74 PF09726 Macoilin: Transmembra 97.8 0.01 2.2E-07 73.5 29.5 112 634-768 538-654 (697)
75 PRK04863 mukB cell division pr 97.8 0.39 8.4E-06 64.6 51.7 90 577-669 382-477 (1486)
76 KOG0996 Structural maintenance 97.8 0.27 5.8E-06 62.0 54.1 12 88-99 114-125 (1293)
77 KOG1029 Endocytic adaptor prot 97.6 0.3 6.5E-06 58.7 35.9 18 108-125 43-60 (1118)
78 PRK01156 chromosome segregatio 97.6 0.54 1.2E-05 61.3 62.1 15 53-67 27-41 (895)
79 PRK11637 AmiB activator; Provi 97.5 0.11 2.4E-06 61.6 31.9 33 975-1014 394-427 (428)
80 PF05667 DUF812: Protein of un 97.5 0.51 1.1E-05 57.6 37.9 43 723-765 485-527 (594)
81 PF09726 Macoilin: Transmembra 97.5 0.11 2.3E-06 64.6 30.9 31 795-825 545-575 (697)
82 PF05701 WEMBL: Weak chloropla 97.4 0.54 1.2E-05 57.1 58.4 24 531-554 168-191 (522)
83 PF00261 Tropomyosin: Tropomyo 97.4 0.06 1.3E-06 58.4 25.4 98 534-635 133-230 (237)
84 PF05483 SCP-1: Synaptonemal c 97.4 0.51 1.1E-05 56.4 52.8 191 501-697 239-446 (786)
85 KOG0933 Structural maintenance 97.4 0.74 1.6E-05 57.3 42.2 106 573-685 782-887 (1174)
86 PRK04778 septation ring format 97.4 0.71 1.5E-05 56.8 47.4 35 871-905 474-508 (569)
87 PHA02562 46 endonuclease subun 97.3 0.18 4E-06 62.0 31.7 16 84-99 29-44 (562)
88 KOG0250 DNA repair protein RAD 97.3 0.92 2E-05 57.3 52.1 19 80-99 61-79 (1074)
89 PF09755 DUF2046: Uncharacteri 97.3 0.39 8.5E-06 52.9 34.3 56 644-699 225-280 (310)
90 KOG0996 Structural maintenance 97.2 1.2 2.7E-05 56.4 59.3 45 630-674 545-589 (1293)
91 PF05667 DUF812: Protein of un 97.1 1.1 2.4E-05 54.8 34.1 72 604-679 463-536 (594)
92 KOG0964 Structural maintenance 97.1 1.3 2.8E-05 55.1 41.2 28 737-764 343-370 (1200)
93 PF05557 MAD: Mitotic checkpoi 97.1 0.0031 6.7E-08 79.6 12.5 30 795-824 503-532 (722)
94 PF09755 DUF2046: Uncharacteri 97.0 0.88 1.9E-05 50.2 31.5 119 571-698 77-203 (310)
95 PF15066 CAGE1: Cancer-associa 96.9 0.83 1.8E-05 52.3 27.6 123 530-663 385-507 (527)
96 KOG0946 ER-Golgi vesicle-tethe 96.9 1.8 3.8E-05 52.9 31.6 32 530-561 687-718 (970)
97 KOG0976 Rho/Rac1-interacting s 96.9 1.7 3.8E-05 52.6 54.1 33 599-631 281-313 (1265)
98 KOG0999 Microtubule-associated 96.9 1.4 3.1E-05 51.2 51.7 116 533-652 133-254 (772)
99 PHA02562 46 endonuclease subun 96.9 1.2 2.7E-05 54.7 32.4 20 537-556 257-276 (562)
100 COG0556 UvrB Helicase subunit 96.8 0.0012 2.7E-08 76.0 4.9 95 47-147 3-101 (663)
101 PRK10929 putative mechanosensi 96.8 3 6.5E-05 54.5 35.2 30 671-700 206-235 (1109)
102 PRK11281 hypothetical protein; 96.7 2.9 6.2E-05 54.9 34.3 34 667-700 221-254 (1113)
103 PF00261 Tropomyosin: Tropomyo 96.7 1.3 2.8E-05 48.1 30.4 51 382-437 3-53 (237)
104 PF15070 GOLGA2L5: Putative go 96.6 2.8 6.1E-05 51.5 56.3 49 792-845 411-459 (617)
105 COG4942 Membrane-bound metallo 96.6 2.1 4.6E-05 49.3 31.0 49 620-668 154-202 (420)
106 KOG0994 Extracellular matrix g 96.5 4.1 8.8E-05 51.6 45.9 31 880-910 1710-1740(1758)
107 COG1579 Zn-ribbon protein, pos 96.5 0.72 1.6E-05 49.4 22.5 117 578-699 59-175 (239)
108 PF05557 MAD: Mitotic checkpoi 96.4 0.00086 1.9E-08 84.5 0.0 67 860-926 358-429 (722)
109 KOG0995 Centromere-associated 96.3 3.4 7.4E-05 48.9 47.6 81 615-695 307-393 (581)
110 KOG0995 Centromere-associated 96.3 3.6 7.8E-05 48.8 43.1 183 500-696 337-526 (581)
111 KOG2129 Uncharacterized conser 96.3 2.6 5.5E-05 47.6 25.8 92 597-698 160-271 (552)
112 KOG2129 Uncharacterized conser 96.2 1.2 2.5E-05 50.2 22.8 126 529-654 159-298 (552)
113 COG0419 SbcC ATPase involved i 96.1 7.7 0.00017 50.7 58.2 16 84-99 27-42 (908)
114 PRK04778 septation ring format 96.1 5.5 0.00012 49.1 46.8 27 604-630 200-226 (569)
115 KOG0250 DNA repair protein RAD 96.0 7.1 0.00015 49.8 53.4 29 795-823 734-762 (1074)
116 KOG0946 ER-Golgi vesicle-tethe 96.0 6.2 0.00014 48.5 29.6 34 599-632 682-715 (970)
117 KOG0018 Structural maintenance 95.9 7.7 0.00017 49.3 43.1 30 914-956 1015-1044(1141)
118 PF10481 CENP-F_N: Cenp-F N-te 95.9 1.7 3.8E-05 46.5 21.1 163 577-764 17-190 (307)
119 PF05010 TACC: Transforming ac 95.7 3.3 7.2E-05 43.6 28.6 83 611-700 106-188 (207)
120 PF05622 HOOK: HOOK protein; 95.7 0.0027 5.9E-08 79.9 0.0 41 632-672 361-401 (713)
121 PRK04863 mukB cell division pr 95.7 14 0.0003 50.4 50.0 69 794-864 564-632 (1486)
122 COG4942 Membrane-bound metallo 95.4 7.1 0.00015 45.2 34.0 16 969-984 317-332 (420)
123 PF09730 BicD: Microtubule-ass 95.4 11 0.00023 47.0 51.7 144 500-652 32-181 (717)
124 KOG0963 Transcription factor/C 95.3 9.1 0.0002 46.0 43.9 51 904-955 428-478 (629)
125 COG4372 Uncharacterized protei 95.1 7.4 0.00016 43.7 31.0 36 633-668 122-157 (499)
126 COG4372 Uncharacterized protei 95.0 7.7 0.00017 43.6 34.4 82 294-396 8-90 (499)
127 KOG0999 Microtubule-associated 95.0 9.7 0.00021 44.7 38.7 132 529-667 44-189 (772)
128 PF15066 CAGE1: Cancer-associa 95.0 9.1 0.0002 44.2 29.9 113 608-763 410-523 (527)
129 PRK09039 hypothetical protein; 94.9 3.4 7.3E-05 47.4 21.6 82 608-692 115-199 (343)
130 PF15070 GOLGA2L5: Putative go 94.7 15 0.00032 45.4 54.1 55 499-553 84-140 (617)
131 COG3883 Uncharacterized protei 94.7 7.8 0.00017 42.2 29.5 41 646-686 71-111 (265)
132 PF04849 HAP1_N: HAP1 N-termin 94.5 9.7 0.00021 42.3 29.6 137 531-685 163-299 (306)
133 COG5185 HEC1 Protein involved 94.5 12 0.00026 43.2 37.0 62 607-668 485-546 (622)
134 COG1579 Zn-ribbon protein, pos 94.4 8.6 0.00019 41.4 23.0 59 610-668 111-169 (239)
135 COG3883 Uncharacterized protei 94.4 9.2 0.0002 41.7 24.0 43 626-668 175-217 (265)
136 PF14662 CCDC155: Coiled-coil 94.4 7.1 0.00015 40.2 26.4 37 635-671 89-125 (193)
137 PF05701 WEMBL: Weak chloropla 94.2 18 0.00039 44.1 58.8 72 840-911 367-438 (522)
138 PF15619 Lebercilin: Ciliary p 94.2 8.4 0.00018 40.3 24.8 66 604-669 120-185 (194)
139 PF12718 Tropomyosin_1: Tropom 94.2 6.6 0.00014 39.0 20.7 73 499-588 18-90 (143)
140 PF12718 Tropomyosin_1: Tropom 94.1 5.8 0.00013 39.4 18.5 28 606-633 77-104 (143)
141 KOG0962 DNA repair protein RAD 94.1 28 0.00061 45.8 50.2 36 294-333 108-143 (1294)
142 PF05622 HOOK: HOOK protein; 94.0 0.015 3.3E-07 73.2 0.0 23 574-596 263-285 (713)
143 PRK09039 hypothetical protein; 93.9 8.1 0.00017 44.3 21.8 137 500-658 44-182 (343)
144 PF15397 DUF4618: Domain of un 93.9 11 0.00025 40.9 27.7 34 630-663 189-222 (258)
145 PF09728 Taxilin: Myosin-like 93.9 14 0.0003 41.7 38.4 36 404-439 20-55 (309)
146 PF00308 Bac_DnaA: Bacterial d 93.8 0.035 7.5E-07 59.5 2.3 49 47-99 3-51 (219)
147 KOG0980 Actin-binding protein 93.8 24 0.00052 44.1 37.5 20 613-632 390-409 (980)
148 PF05483 SCP-1: Synaptonemal c 93.8 21 0.00046 43.4 58.6 36 407-442 241-276 (786)
149 COG2805 PilT Tfp pilus assembl 93.7 0.032 7E-07 60.8 1.8 32 68-99 111-142 (353)
150 KOG4593 Mitotic checkpoint pro 93.7 22 0.00048 43.4 53.4 24 530-553 160-183 (716)
151 PF10481 CENP-F_N: Cenp-F N-te 93.7 7.9 0.00017 41.7 19.1 113 643-774 20-133 (307)
152 PF09787 Golgin_A5: Golgin sub 93.5 23 0.0005 43.1 34.9 140 604-767 283-430 (511)
153 PF08317 Spc7: Spc7 kinetochor 93.5 7.4 0.00016 44.3 20.6 27 570-596 176-202 (325)
154 COG1340 Uncharacterized archae 93.5 15 0.00032 40.7 35.4 56 614-669 32-90 (294)
155 PF06160 EzrA: Septation ring 93.4 25 0.00055 43.2 51.1 50 860-909 459-508 (560)
156 PF14662 CCDC155: Coiled-coil 93.4 11 0.00024 38.9 25.8 19 678-696 170-188 (193)
157 KOG1850 Myosin-like coiled-coi 93.3 16 0.00034 40.3 43.8 68 867-948 293-362 (391)
158 PRK06893 DNA replication initi 93.1 0.059 1.3E-06 58.2 2.7 47 46-99 10-56 (229)
159 TIGR03185 DNA_S_dndD DNA sulfu 93.0 32 0.0007 43.2 40.2 16 84-99 30-45 (650)
160 KOG1003 Actin filament-coating 93.0 12 0.00027 38.4 24.5 17 380-396 4-20 (205)
161 PF14988 DUF4515: Domain of un 92.9 15 0.00032 39.0 26.3 81 528-613 40-125 (206)
162 PF14915 CCDC144C: CCDC144C pr 92.9 18 0.00038 39.9 35.6 60 634-696 235-294 (305)
163 KOG0980 Actin-binding protein 92.8 34 0.00073 42.9 36.7 59 635-693 453-511 (980)
164 PF15254 CCDC14: Coiled-coil d 92.7 10 0.00022 46.5 20.4 73 498-574 397-476 (861)
165 PRK06620 hypothetical protein; 92.7 0.065 1.4E-06 57.2 2.3 49 46-99 10-61 (214)
166 PF12325 TMF_TATA_bd: TATA ele 92.4 7.5 0.00016 37.3 15.4 51 577-630 67-117 (120)
167 KOG1937 Uncharacterized conser 92.4 26 0.00056 40.5 37.6 144 599-762 276-422 (521)
168 PF13851 GAS: Growth-arrest sp 92.3 17 0.00037 38.3 22.0 18 380-397 27-44 (201)
169 PF06160 EzrA: Septation ring 92.0 38 0.00081 41.7 52.0 107 530-646 156-264 (560)
170 KOG4807 F-actin binding protei 92.0 25 0.00055 39.6 29.8 103 567-669 410-526 (593)
171 KOG0018 Structural maintenance 92.0 47 0.001 42.7 40.3 38 331-368 91-128 (1141)
172 PF06705 SF-assemblin: SF-asse 91.9 22 0.00048 38.8 25.6 40 602-641 150-189 (247)
173 COG0419 SbcC ATPase involved i 91.6 56 0.0012 42.9 62.3 23 534-556 321-343 (908)
174 TIGR03007 pepcterm_ChnLen poly 91.5 21 0.00046 43.2 22.4 93 500-592 166-268 (498)
175 PRK09087 hypothetical protein; 91.5 0.12 2.6E-06 55.6 2.6 47 46-99 15-61 (226)
176 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.5 15 0.00032 36.0 19.6 24 673-696 105-128 (132)
177 PF15619 Lebercilin: Ciliary p 91.4 21 0.00045 37.5 24.7 27 535-561 12-38 (194)
178 PF10168 Nup88: Nuclear pore c 91.3 16 0.00034 46.2 21.0 66 629-694 634-710 (717)
179 PF15254 CCDC14: Coiled-coil d 91.0 20 0.00044 44.1 20.4 46 351-396 365-410 (861)
180 PF06785 UPF0242: Uncharacteri 90.9 30 0.00065 38.4 20.2 70 631-700 110-179 (401)
181 TIGR03185 DNA_S_dndD DNA sulfu 90.9 53 0.0012 41.3 38.8 13 723-735 487-499 (650)
182 KOG4302 Microtubule-associated 90.8 47 0.001 41.1 23.6 49 794-847 225-273 (660)
183 KOG4807 F-actin binding protei 90.7 33 0.00072 38.7 30.1 218 532-764 295-540 (593)
184 TIGR01005 eps_transp_fam exopo 90.7 16 0.00035 46.7 21.1 26 334-359 152-177 (754)
185 KOG1853 LIS1-interacting prote 90.4 27 0.00059 37.1 21.1 16 629-644 166-181 (333)
186 PF05010 TACC: Transforming ac 90.4 27 0.00057 37.0 24.7 47 626-672 139-185 (207)
187 smart00787 Spc7 Spc7 kinetocho 90.1 32 0.00069 38.9 20.2 28 569-596 170-197 (312)
188 KOG1853 LIS1-interacting prote 89.9 30 0.00065 36.8 24.4 20 630-649 30-49 (333)
189 KOG0962 DNA repair protein RAD 89.8 82 0.0018 41.8 53.7 31 626-656 832-862 (1294)
190 TIGR03007 pepcterm_ChnLen poly 89.8 54 0.0012 39.7 25.4 26 333-358 118-143 (498)
191 PF15450 DUF4631: Domain of un 89.8 50 0.0011 39.2 53.0 119 501-622 166-285 (531)
192 PF11559 ADIP: Afadin- and alp 89.6 18 0.0004 36.1 16.3 46 626-671 104-149 (151)
193 PRK14086 dnaA chromosomal repl 89.5 0.17 3.8E-06 61.4 1.8 49 47-99 283-331 (617)
194 PRK14088 dnaA chromosomal repl 89.5 0.22 4.8E-06 59.1 2.7 49 46-99 99-147 (440)
195 PRK00149 dnaA chromosomal repl 89.3 0.43 9.4E-06 57.0 5.1 49 47-99 117-165 (450)
196 TIGR01005 eps_transp_fam exopo 89.3 33 0.00072 43.9 22.4 61 499-559 198-261 (754)
197 PF10473 CENP-F_leu_zip: Leuci 89.1 25 0.00053 34.8 19.3 15 536-550 25-39 (140)
198 TIGR00631 uvrb excinuclease AB 89.0 0.25 5.5E-06 61.4 2.8 93 49-147 2-98 (655)
199 COG2804 PulE Type II secretory 88.9 0.35 7.6E-06 56.8 3.7 28 72-99 248-275 (500)
200 KOG0804 Cytoplasmic Zn-finger 88.9 19 0.00041 41.7 17.0 32 630-661 417-448 (493)
201 PF12325 TMF_TATA_bd: TATA ele 88.9 19 0.00042 34.5 14.8 54 372-437 8-61 (120)
202 PRK05642 DNA replication initi 88.4 0.31 6.7E-06 52.8 2.7 48 47-99 14-62 (234)
203 COG0593 DnaA ATPase involved i 87.8 0.33 7.1E-06 56.3 2.5 50 46-99 81-130 (408)
204 PF10473 CENP-F_leu_zip: Leuci 87.8 30 0.00066 34.2 17.2 32 732-763 6-37 (140)
205 COG1474 CDC6 Cdc6-related prot 87.5 0.88 1.9E-05 52.6 5.8 52 73-142 32-84 (366)
206 PF10168 Nup88: Nuclear pore c 87.5 47 0.001 42.0 21.2 18 170-187 293-310 (717)
207 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.3 31 0.00067 33.8 19.9 39 724-762 93-131 (132)
208 smart00787 Spc7 Spc7 kinetocho 86.9 45 0.00097 37.7 18.7 24 607-630 230-253 (312)
209 KOG1899 LAR transmembrane tyro 86.9 24 0.00053 42.2 16.6 54 500-553 193-249 (861)
210 KOG4593 Mitotic checkpoint pro 86.9 87 0.0019 38.5 44.6 38 727-764 279-320 (716)
211 PF00769 ERM: Ezrin/radixin/mo 86.7 37 0.0008 37.1 17.4 62 633-694 60-124 (246)
212 KOG0979 Structural maintenance 86.5 1.1E+02 0.0024 39.3 29.3 77 608-688 834-910 (1072)
213 TIGR02680 conserved hypothetic 86.5 1.5E+02 0.0032 40.8 36.0 59 613-671 907-965 (1353)
214 PRK08084 DNA replication initi 86.4 0.42 9.1E-06 51.8 2.3 47 46-99 16-62 (235)
215 TIGR00362 DnaA chromosomal rep 86.4 0.46 9.9E-06 55.9 2.8 50 46-99 104-153 (405)
216 PRK12377 putative replication 86.3 0.53 1.1E-05 51.3 2.9 49 48-99 70-118 (248)
217 PRK06526 transposase; Provisio 86.2 0.47 1E-05 52.0 2.5 16 85-100 101-116 (254)
218 PRK08727 hypothetical protein; 85.9 0.38 8.2E-06 52.1 1.7 44 47-99 14-58 (233)
219 KOG1899 LAR transmembrane tyro 85.9 78 0.0017 38.2 20.0 69 599-670 192-260 (861)
220 PF00769 ERM: Ezrin/radixin/mo 85.7 44 0.00095 36.5 17.4 43 643-685 84-126 (246)
221 PF04851 ResIII: Type III rest 85.7 0.47 1E-05 48.4 2.1 31 69-99 11-42 (184)
222 PF04849 HAP1_N: HAP1 N-termin 85.5 67 0.0015 35.9 28.6 61 636-700 208-268 (306)
223 PRK00411 cdc6 cell division co 85.5 0.76 1.7E-05 53.8 4.0 27 73-99 45-72 (394)
224 COG1340 Uncharacterized archae 85.5 65 0.0014 35.7 38.0 18 538-555 30-47 (294)
225 TIGR03420 DnaA_homol_Hda DnaA 85.2 0.5 1.1E-05 50.5 2.2 46 47-99 10-55 (226)
226 PRK08903 DnaA regulatory inact 85.1 0.54 1.2E-05 50.5 2.3 47 47-99 13-59 (227)
227 PRK14087 dnaA chromosomal repl 85.1 0.52 1.1E-05 56.1 2.3 48 48-99 111-158 (450)
228 PRK08116 hypothetical protein; 84.8 0.52 1.1E-05 52.1 2.1 50 47-99 80-131 (268)
229 PRK10929 putative mechanosensi 84.7 1.5E+02 0.0033 39.4 42.9 27 531-557 105-131 (1109)
230 cd00009 AAA The AAA+ (ATPases 84.6 0.63 1.4E-05 45.1 2.4 29 71-99 8-36 (151)
231 PF13245 AAA_19: Part of AAA d 84.6 0.48 1E-05 41.6 1.3 25 74-99 3-27 (76)
232 COG5008 PilU Tfp pilus assembl 84.5 0.65 1.4E-05 49.9 2.4 43 70-112 115-159 (375)
233 PRK07952 DNA replication prote 84.2 0.78 1.7E-05 49.9 3.0 50 47-99 67-116 (244)
234 PF04111 APG6: Autophagy prote 84.0 22 0.00049 40.2 14.7 30 639-668 104-133 (314)
235 PF08317 Spc7: Spc7 kinetochor 83.9 85 0.0018 35.8 27.5 13 534-546 74-86 (325)
236 PF13851 GAS: Growth-arrest sp 83.8 62 0.0014 34.1 22.3 22 646-667 148-169 (201)
237 PRK11281 hypothetical protein; 83.6 1.7E+02 0.0037 39.0 44.4 57 531-588 124-180 (1113)
238 TIGR02928 orc1/cdc6 family rep 83.5 0.84 1.8E-05 52.8 3.2 27 73-99 30-57 (365)
239 PLN02939 transferase, transfer 83.4 1.6E+02 0.0034 38.5 24.5 82 795-876 257-341 (977)
240 COG1382 GimC Prefoldin, chaper 83.3 34 0.00073 32.7 13.0 105 794-912 12-116 (119)
241 smart00053 DYNc Dynamin, GTPas 83.3 2.9 6.3E-05 45.4 6.9 52 196-274 86-137 (240)
242 PF09730 BicD: Microtubule-ass 83.1 1.4E+02 0.003 37.6 58.4 100 643-764 361-461 (717)
243 TIGR01843 type_I_hlyD type I s 83.0 1E+02 0.0022 36.1 23.3 29 641-669 137-165 (423)
244 COG2433 Uncharacterized conser 82.3 23 0.00049 42.7 13.9 30 110-139 164-193 (652)
245 PRK13729 conjugal transfer pil 82.3 9.7 0.00021 44.8 11.0 51 860-910 70-120 (475)
246 PRK08181 transposase; Validate 82.2 1.1 2.3E-05 49.6 3.2 19 79-99 105-123 (269)
247 PF04111 APG6: Autophagy prote 82.1 27 0.00058 39.6 14.3 11 543-553 17-27 (314)
248 TIGR01420 pilT_fam pilus retra 81.9 0.85 1.8E-05 52.4 2.3 30 70-99 110-139 (343)
249 PF15294 Leu_zip: Leucine zipp 81.8 47 0.001 36.6 15.3 18 675-692 259-276 (278)
250 PF14988 DUF4515: Domain of un 81.7 76 0.0016 33.7 26.6 69 579-650 55-123 (206)
251 PRK10436 hypothetical protein; 81.3 0.71 1.5E-05 54.9 1.5 27 73-99 209-235 (462)
252 KOG0978 E3 ubiquitin ligase in 81.0 1.6E+02 0.0034 36.8 53.7 60 854-913 561-620 (698)
253 KOG0804 Cytoplasmic Zn-finger 80.8 81 0.0017 36.8 17.1 39 194-238 120-159 (493)
254 PF08232 Striatin: Striatin fa 80.5 25 0.00055 34.5 11.7 118 847-964 6-123 (134)
255 PF02456 Adeno_IVa2: Adenoviru 80.5 0.51 1.1E-05 51.9 -0.1 16 84-99 89-104 (369)
256 TIGR02533 type_II_gspE general 80.2 0.85 1.9E-05 54.8 1.7 27 73-99 233-259 (486)
257 TIGR01843 type_I_hlyD type I s 80.1 1.3E+02 0.0028 35.3 22.9 20 678-697 251-270 (423)
258 TIGR02538 type_IV_pilB type IV 80.0 0.76 1.7E-05 56.4 1.2 27 73-99 307-333 (564)
259 TIGR03017 EpsF chain length de 79.7 1.4E+02 0.003 35.5 23.1 93 500-592 176-275 (444)
260 PF00437 T2SE: Type II/IV secr 79.6 0.74 1.6E-05 50.9 0.8 28 72-99 114-144 (270)
261 PF13401 AAA_22: AAA domain; P 79.1 0.65 1.4E-05 44.8 0.2 18 82-99 4-21 (131)
262 cd01131 PilT Pilus retraction 79.1 0.78 1.7E-05 48.3 0.8 18 82-99 1-18 (198)
263 TIGR02524 dot_icm_DotB Dot/Icm 79.0 1 2.2E-05 52.0 1.7 24 76-99 128-151 (358)
264 TIGR02525 plasmid_TraJ plasmid 78.7 1 2.3E-05 52.0 1.7 19 81-99 148-166 (372)
265 PRK12422 chromosomal replicati 78.3 1.6 3.4E-05 52.0 3.0 50 46-99 105-158 (445)
266 PF10146 zf-C4H2: Zinc finger- 78.1 91 0.002 33.6 15.9 25 537-561 3-27 (230)
267 PF00270 DEAD: DEAD/DEAH box h 78.1 2.4 5.2E-05 42.6 4.0 24 74-99 8-31 (169)
268 PRK10884 SH3 domain-containing 77.8 30 0.00065 36.6 12.1 14 578-591 93-106 (206)
269 cd00046 DEXDc DEAD-like helica 77.7 0.89 1.9E-05 43.5 0.7 15 85-99 3-17 (144)
270 PF09787 Golgin_A5: Golgin sub 77.7 1.8E+02 0.0038 35.5 33.6 14 948-961 469-482 (511)
271 PTZ00112 origin recognition co 77.6 3.7 8E-05 51.7 5.9 20 80-99 779-798 (1164)
272 PRK06835 DNA replication prote 77.4 1.4 3.1E-05 50.1 2.3 29 70-99 172-200 (329)
273 KOG4360 Uncharacterized coiled 77.2 60 0.0013 38.3 14.8 42 865-906 260-301 (596)
274 PF08614 ATG16: Autophagy prot 77.0 23 0.00051 37.1 11.1 30 795-824 74-103 (194)
275 PRK08939 primosomal protein Dn 76.7 1.5 3.3E-05 49.4 2.3 50 49-100 124-174 (306)
276 KOG1003 Actin filament-coating 76.5 1E+02 0.0022 32.1 20.6 24 409-432 49-72 (205)
277 PF13604 AAA_30: AAA domain; P 76.5 1.3 2.9E-05 46.5 1.6 27 73-99 9-35 (196)
278 PF07111 HCR: Alpha helical co 76.5 2E+02 0.0044 35.6 64.2 82 795-877 521-607 (739)
279 smart00382 AAA ATPases associa 76.3 1 2.3E-05 43.0 0.7 17 83-99 3-19 (148)
280 PF05673 DUF815: Protein of un 76.2 3.3 7.2E-05 44.7 4.5 47 47-99 22-69 (249)
281 PF09728 Taxilin: Myosin-like 76.2 1.4E+02 0.0031 33.7 40.8 25 535-559 43-67 (309)
282 KOG0978 E3 ubiquitin ligase in 76.0 2.2E+02 0.0047 35.7 52.9 27 852-878 566-592 (698)
283 KOG0249 LAR-interacting protei 75.9 2.1E+02 0.0045 35.4 26.1 316 385-762 5-324 (916)
284 PRK06921 hypothetical protein; 75.8 1.9 4.2E-05 47.6 2.7 50 48-99 80-134 (266)
285 PLN00020 ribulose bisphosphate 75.8 2.2 4.7E-05 48.8 3.1 52 47-99 110-165 (413)
286 PF15290 Syntaphilin: Golgi-lo 75.5 92 0.002 34.1 14.7 80 631-729 72-152 (305)
287 cd01129 PulE-GspE PulE/GspE Th 75.3 1.4 3.1E-05 48.6 1.5 26 74-99 72-97 (264)
288 KOG0989 Replication factor C, 75.1 2 4.3E-05 47.5 2.5 36 64-99 38-74 (346)
289 PF07798 DUF1640: Protein of u 74.8 1.1E+02 0.0023 31.6 17.4 56 631-686 95-151 (177)
290 PF10146 zf-C4H2: Zinc finger- 74.7 88 0.0019 33.8 14.7 20 619-638 45-64 (230)
291 PF09738 DUF2051: Double stran 74.6 1.5E+02 0.0033 33.3 20.1 32 743-774 219-250 (302)
292 COG1484 DnaC DNA replication p 74.5 2.5 5.4E-05 46.4 3.1 49 47-99 74-122 (254)
293 PF08614 ATG16: Autophagy prot 74.3 34 0.00074 35.9 11.5 16 576-591 72-87 (194)
294 COG1222 RPT1 ATP-dependent 26S 74.3 2.4 5.1E-05 47.8 2.8 88 10-98 94-201 (406)
295 PF01637 Arch_ATPase: Archaeal 74.1 1.5 3.2E-05 46.6 1.3 29 71-99 9-37 (234)
296 PF04156 IncA: IncA protein; 74.1 1.1E+02 0.0025 31.6 16.7 13 503-515 82-94 (191)
297 smart00763 AAA_PrkA PrkA AAA d 74.1 5.4 0.00012 45.7 5.7 43 51-99 49-95 (361)
298 PRK10884 SH3 domain-containing 74.0 53 0.0011 34.8 12.7 12 576-587 98-109 (206)
299 KOG0926 DEAH-box RNA helicase 73.9 2.2 4.8E-05 52.3 2.6 38 82-119 271-319 (1172)
300 PF00448 SRP54: SRP54-type pro 73.6 1.2 2.7E-05 46.7 0.5 16 84-99 3-18 (196)
301 PF07111 HCR: Alpha helical co 73.5 2.4E+02 0.0052 35.0 57.2 27 838-864 542-568 (739)
302 PF01695 IstB_IS21: IstB-like 73.2 2.1 4.6E-05 44.2 2.1 18 82-99 47-64 (178)
303 PF01935 DUF87: Domain of unkn 73.2 1.4 3E-05 47.3 0.8 15 85-99 26-40 (229)
304 PF10212 TTKRSYEDQ: Predicted 73.1 2.2E+02 0.0047 34.3 22.5 100 569-668 411-514 (518)
305 KOG2373 Predicted mitochondria 73.0 2 4.4E-05 47.8 1.9 27 72-99 261-290 (514)
306 KOG4360 Uncharacterized coiled 72.9 1.8E+02 0.0038 34.6 17.1 11 659-669 272-282 (596)
307 PF13191 AAA_16: AAA ATPase do 72.5 1.4 3.1E-05 45.1 0.6 29 71-99 13-41 (185)
308 PF05266 DUF724: Protein of un 72.5 99 0.0021 32.3 14.1 57 604-671 126-182 (190)
309 PRK03992 proteasome-activating 71.8 1.4 3E-05 51.7 0.3 51 48-99 127-182 (389)
310 PF13479 AAA_24: AAA domain 71.6 1.7 3.8E-05 46.2 1.0 19 82-100 3-21 (213)
311 TIGR02782 TrbB_P P-type conjug 71.5 1.8 3.8E-05 48.8 1.1 28 71-99 122-149 (299)
312 PF00004 AAA: ATPase family as 71.5 1.5 3.1E-05 42.2 0.4 15 85-99 1-15 (132)
313 PF13207 AAA_17: AAA domain; P 71.4 1.6 3.4E-05 41.5 0.6 16 84-99 1-16 (121)
314 PRK15455 PrkA family serine pr 71.2 8.2 0.00018 46.8 6.5 67 51-122 75-163 (644)
315 PF12846 AAA_10: AAA-like doma 71.2 1.6 3.4E-05 48.6 0.6 18 82-99 1-18 (304)
316 PHA02544 44 clamp loader, smal 70.5 2.3 5.1E-05 48.0 1.8 21 79-99 39-60 (316)
317 COG5185 HEC1 Protein involved 69.9 2.3E+02 0.005 33.3 42.4 59 500-560 262-320 (622)
318 TIGR01242 26Sp45 26S proteasom 69.8 1.5 3.2E-05 50.9 -0.0 52 47-99 117-173 (364)
319 PRK13894 conjugal transfer ATP 69.7 2 4.3E-05 48.7 1.0 27 72-99 139-165 (319)
320 TIGR02338 gimC_beta prefoldin, 69.0 72 0.0016 30.1 11.3 100 794-907 9-108 (110)
321 PRK09343 prefoldin subunit bet 68.9 1E+02 0.0022 29.7 12.5 45 868-912 73-117 (121)
322 PRK13900 type IV secretion sys 68.5 2.7 5.8E-05 48.0 1.7 28 71-99 150-177 (332)
323 COG4962 CpaF Flp pilus assembl 68.3 2.6 5.7E-05 47.4 1.6 76 72-153 164-269 (355)
324 PF13086 AAA_11: AAA domain; P 68.2 2.3 5E-05 45.1 1.1 25 74-99 10-34 (236)
325 PRK09183 transposase/IS protei 68.1 3.5 7.5E-05 45.4 2.5 19 79-99 101-119 (259)
326 PTZ00361 26 proteosome regulat 68.1 4.8 0.0001 47.6 3.8 50 49-99 180-234 (438)
327 cd01130 VirB11-like_ATPase Typ 67.9 2.9 6.4E-05 43.4 1.8 28 71-99 15-42 (186)
328 KOG3859 Septins (P-loop GTPase 67.9 1.2E+02 0.0026 33.3 13.6 24 76-99 36-59 (406)
329 PRK12402 replication factor C 67.9 3.4 7.4E-05 47.0 2.5 21 79-99 33-53 (337)
330 PRK06547 hypothetical protein; 67.9 3.9 8.4E-05 42.0 2.6 30 70-99 3-32 (172)
331 PF05911 DUF869: Plant protein 67.4 3.5E+02 0.0077 34.5 32.2 96 531-629 48-154 (769)
332 PRK12723 flagellar biosynthesi 67.2 4.2 9.1E-05 47.4 3.0 18 82-99 174-191 (388)
333 KOG2751 Beclin-like protein [S 67.2 2.1E+02 0.0046 33.3 16.1 30 600-629 195-224 (447)
334 PF00580 UvrD-helicase: UvrD/R 67.1 4.9 0.00011 44.9 3.5 20 80-99 11-30 (315)
335 KOG4403 Cell surface glycoprot 67.0 2.5E+02 0.0054 32.6 19.7 28 918-945 469-498 (575)
336 PRK13833 conjugal transfer pro 67.0 2.4 5.3E-05 48.0 1.0 27 72-99 135-161 (323)
337 PF09304 Cortex-I_coil: Cortex 67.0 1.1E+02 0.0024 28.6 15.5 19 535-553 9-27 (107)
338 PTZ00454 26S protease regulato 66.8 2 4.3E-05 50.3 0.3 52 47-99 140-196 (398)
339 TIGR03499 FlhF flagellar biosy 66.5 4.9 0.00011 44.8 3.3 16 84-99 196-211 (282)
340 PF02562 PhoH: PhoH-like prote 65.6 3.6 7.9E-05 43.4 1.9 19 81-99 18-36 (205)
341 PHA00729 NTP-binding motif con 65.4 4.5 9.8E-05 43.3 2.6 29 71-99 6-34 (226)
342 COG2433 Uncharacterized conser 65.4 95 0.0021 37.7 13.4 18 72-89 71-88 (652)
343 PF05700 BCAS2: Breast carcino 65.1 2E+02 0.0043 30.8 16.7 32 599-630 186-217 (221)
344 COG1223 Predicted ATPase (AAA+ 64.7 2.7 5.9E-05 45.3 0.7 18 82-99 151-168 (368)
345 TIGR03319 YmdA_YtgF conserved 64.6 3.3E+02 0.0072 33.2 22.1 25 1005-1029 405-429 (514)
346 TIGR02903 spore_lon_C ATP-depe 64.6 2.8 6.1E-05 52.0 1.0 43 48-99 150-192 (615)
347 TIGR03015 pepcterm_ATPase puta 64.2 4.3 9.2E-05 44.6 2.3 22 78-99 39-60 (269)
348 PRK13851 type IV secretion sys 63.9 2.8 6E-05 48.0 0.7 27 72-99 153-179 (344)
349 PF10186 Atg14: UV radiation r 63.3 2.4E+02 0.0053 31.2 20.2 21 796-816 253-273 (302)
350 COG2256 MGS1 ATPase related to 63.3 3.5 7.7E-05 47.2 1.4 43 50-98 22-64 (436)
351 PF06818 Fez1: Fez1; InterPro 63.3 2E+02 0.0044 30.2 20.6 20 577-596 86-105 (202)
352 PRK10361 DNA recombination pro 63.1 3.3E+02 0.0072 32.7 26.1 51 596-646 100-159 (475)
353 KOG4460 Nuclear pore complex, 63.1 3.3E+02 0.0072 32.7 18.1 41 613-653 659-699 (741)
354 PF13671 AAA_33: AAA domain; P 63.0 3.2 7E-05 40.6 0.9 16 84-99 1-16 (143)
355 PRK13342 recombination factor 62.9 3.6 7.8E-05 48.6 1.4 27 73-99 27-53 (413)
356 COG1219 ClpX ATP-dependent pro 62.8 3.3 7.2E-05 45.9 1.0 17 82-98 97-113 (408)
357 KOG4809 Rab6 GTPase-interactin 62.7 3.4E+02 0.0073 32.6 35.3 54 616-669 313-366 (654)
358 PF04912 Dynamitin: Dynamitin 62.5 3.1E+02 0.0067 32.1 24.3 62 631-692 326-387 (388)
359 PRK13764 ATPase; Provisional 62.3 3.7 8E-05 50.4 1.4 24 76-99 251-274 (602)
360 PF05970 PIF1: PIF1-like helic 62.0 5.6 0.00012 46.1 2.8 35 61-99 5-39 (364)
361 PF03215 Rad17: Rad17 cell cyc 62.0 4.4 9.5E-05 49.1 1.9 30 70-99 31-62 (519)
362 TIGR02680 conserved hypothetic 61.7 5.9E+02 0.013 35.1 42.7 14 86-99 28-41 (1353)
363 KOG0288 WD40 repeat protein Ti 61.4 3.1E+02 0.0068 31.8 16.0 65 602-666 6-73 (459)
364 KOG4403 Cell surface glycoprot 61.1 3.2E+02 0.0069 31.8 16.0 32 668-699 342-373 (575)
365 PF07724 AAA_2: AAA domain (Cd 61.0 3.6 7.9E-05 42.2 0.9 17 83-99 4-20 (171)
366 TIGR00635 ruvB Holliday juncti 60.8 5.3 0.00012 44.9 2.3 16 84-99 32-47 (305)
367 PF06705 SF-assemblin: SF-asse 60.6 2.5E+02 0.0055 30.5 31.2 16 381-396 6-21 (247)
368 COG1419 FlhF Flagellar GTP-bin 60.4 6 0.00013 45.7 2.6 18 82-99 203-220 (407)
369 PF00910 RNA_helicase: RNA hel 60.3 2.9 6.2E-05 39.2 -0.0 15 85-99 1-15 (107)
370 PF11559 ADIP: Afadin- and alp 60.2 1.9E+02 0.0041 28.9 17.3 46 599-644 70-115 (151)
371 PF14915 CCDC144C: CCDC144C pr 60.1 2.8E+02 0.0061 30.9 40.9 24 800-823 219-242 (305)
372 PLN02939 transferase, transfer 60.0 5.2E+02 0.011 33.9 24.8 19 533-551 269-287 (977)
373 PF11932 DUF3450: Protein of u 59.8 2.6E+02 0.0057 30.4 15.6 24 599-622 46-69 (251)
374 PRK07003 DNA polymerase III su 59.8 15 0.00033 46.0 6.0 41 50-99 14-55 (830)
375 PRK14722 flhF flagellar biosyn 59.6 3.8 8.3E-05 47.3 0.8 18 82-99 137-154 (374)
376 TIGR03345 VI_ClpV1 type VI sec 59.5 13 0.00028 48.1 5.6 17 83-99 597-613 (852)
377 PRK13341 recombination factor 59.4 5.2 0.00011 50.4 2.0 21 79-99 49-69 (725)
378 smart00487 DEXDc DEAD-like hel 59.4 5.4 0.00012 40.6 1.9 23 76-99 19-41 (201)
379 PF05496 RuvB_N: Holliday junc 59.1 8 0.00017 41.4 3.0 43 50-98 22-66 (233)
380 TIGR02788 VirB11 P-type DNA tr 58.9 6.4 0.00014 44.5 2.5 29 70-99 133-161 (308)
381 PF03915 AIP3: Actin interacti 58.9 2.8E+02 0.0061 32.8 15.8 28 738-765 294-321 (424)
382 PRK15424 propionate catabolism 58.9 12 0.00027 45.5 5.0 34 180-213 320-353 (538)
383 KOG0736 Peroxisome assembly fa 58.8 10 0.00022 46.9 4.2 24 105-128 783-806 (953)
384 PRK12704 phosphodiesterase; Pr 58.8 4.2E+02 0.009 32.4 22.1 151 590-771 33-183 (520)
385 KOG0953 Mitochondrial RNA heli 58.8 7.1 0.00015 46.3 2.8 43 84-126 193-238 (700)
386 PF11932 DUF3450: Protein of u 58.7 1.7E+02 0.0036 32.0 13.5 40 633-672 41-80 (251)
387 KOG2991 Splicing regulator [RN 58.4 2.7E+02 0.0058 30.1 20.4 195 405-647 107-302 (330)
388 PF14073 Cep57_CLD: Centrosome 58.4 2.3E+02 0.0049 29.2 22.3 47 583-629 115-161 (178)
389 CHL00081 chlI Mg-protoporyphyr 58.3 3.4 7.3E-05 47.4 0.1 44 47-99 12-55 (350)
390 PF12709 Kinetocho_Slk19: Cent 58.2 1.4E+02 0.003 27.0 10.0 36 526-561 36-75 (87)
391 PF09789 DUF2353: Uncharacteri 58.2 3.2E+02 0.007 30.9 26.2 230 623-935 5-251 (319)
392 PF01580 FtsK_SpoIIIE: FtsK/Sp 58.1 3.5 7.7E-05 43.4 0.2 16 84-99 40-55 (205)
393 PF08172 CASP_C: CASP C termin 58.0 1.3E+02 0.0029 32.8 12.2 48 568-632 83-130 (248)
394 TIGR01010 BexC_CtrB_KpsE polys 57.8 1.7E+02 0.0036 33.8 14.1 161 721-939 168-331 (362)
395 PF07728 AAA_5: AAA domain (dy 57.6 3.7 8.1E-05 40.1 0.3 15 85-99 2-16 (139)
396 COG1382 GimC Prefoldin, chaper 57.5 1.8E+02 0.004 27.9 12.3 34 587-620 12-45 (119)
397 cd00268 DEADc DEAD-box helicas 57.5 6.1 0.00013 41.2 1.9 23 75-99 31-53 (203)
398 PF13238 AAA_18: AAA domain; P 57.4 4.4 9.5E-05 38.6 0.7 15 85-99 1-15 (129)
399 TIGR02881 spore_V_K stage V sp 56.9 4.9 0.00011 44.2 1.1 18 82-99 42-59 (261)
400 TIGR01000 bacteriocin_acc bact 56.5 4.2E+02 0.009 31.7 24.8 21 500-520 102-122 (457)
401 PF13555 AAA_29: P-loop contai 56.3 4.7 0.0001 33.9 0.6 15 85-99 26-40 (62)
402 cd00632 Prefoldin_beta Prefold 55.7 1.8E+02 0.0038 27.2 11.5 28 795-822 6-33 (105)
403 PLN03229 acetyl-coenzyme A car 55.6 5.3E+02 0.011 32.6 25.8 16 383-398 432-447 (762)
404 PHA02244 ATPase-like protein 55.3 11 0.00023 43.5 3.4 32 66-99 105-136 (383)
405 cd01126 TraG_VirD4 The TraG/Tr 55.3 5.5 0.00012 46.5 1.2 15 85-99 2-16 (384)
406 PRK14974 cell division protein 55.1 12 0.00025 42.9 3.7 18 82-99 140-157 (336)
407 PLN03229 acetyl-coenzyme A car 55.0 5.4E+02 0.012 32.5 24.2 12 263-274 245-256 (762)
408 PF08826 DMPK_coil: DMPK coile 54.9 1.3E+02 0.0028 25.3 9.0 56 819-893 4-59 (61)
409 COG1125 OpuBA ABC-type proline 54.5 5 0.00011 43.4 0.6 12 88-99 33-44 (309)
410 PLN03025 replication factor C 54.5 8.3 0.00018 43.8 2.5 20 80-99 32-51 (319)
411 PTZ00424 helicase 45; Provisio 54.5 6.3 0.00014 46.1 1.6 25 73-99 58-82 (401)
412 PF02534 T4SS-DNA_transf: Type 54.3 9 0.0002 46.0 2.9 17 83-99 45-61 (469)
413 KOG0727 26S proteasome regulat 54.2 4 8.6E-05 43.6 -0.2 116 10-126 98-247 (408)
414 PRK10536 hypothetical protein; 53.9 7.6 0.00016 42.5 1.9 17 83-99 75-91 (262)
415 COG1201 Lhr Lhr-like helicases 53.8 13 0.00028 47.2 4.1 24 74-99 31-54 (814)
416 PRK00771 signal recognition pa 53.4 12 0.00027 44.2 3.7 18 82-99 95-112 (437)
417 PRK11331 5-methylcytosine-spec 53.4 7.3 0.00016 46.0 1.8 37 331-371 319-357 (459)
418 KOG2543 Origin recognition com 53.4 5.9 0.00013 45.1 1.0 40 81-143 29-68 (438)
419 COG1136 SalX ABC-type antimicr 53.3 5.3 0.00011 42.8 0.6 15 85-99 34-48 (226)
420 PF07693 KAP_NTPase: KAP famil 53.2 17 0.00036 41.1 4.7 34 66-99 4-37 (325)
421 PRK00440 rfc replication facto 53.2 8.8 0.00019 43.2 2.4 21 79-99 35-55 (319)
422 PRK02119 hypothetical protein; 53.1 73 0.0016 27.8 7.5 54 381-439 3-56 (73)
423 PRK09841 cryptic autophosphory 53.0 2.7E+02 0.0057 35.6 15.8 161 717-935 261-422 (726)
424 TIGR03819 heli_sec_ATPase heli 53.0 16 0.00035 41.9 4.4 29 70-99 167-195 (340)
425 KOG0739 AAA+-type ATPase [Post 52.9 7.1 0.00015 42.9 1.4 79 49-128 130-226 (439)
426 PRK11776 ATP-dependent RNA hel 52.9 7.2 0.00016 46.7 1.7 24 74-99 35-58 (460)
427 TIGR02237 recomb_radB DNA repa 52.9 7.9 0.00017 40.8 1.8 25 75-99 2-29 (209)
428 COG1126 GlnQ ABC-type polar am 52.6 6 0.00013 41.8 0.8 15 85-99 31-45 (240)
429 PRK04195 replication factor C 52.4 8.4 0.00018 46.5 2.2 30 70-99 26-56 (482)
430 TIGR01817 nifA Nif-specific re 52.4 23 0.00049 43.4 6.0 128 49-213 193-321 (534)
431 PF06008 Laminin_I: Laminin Do 52.3 3.6E+02 0.0077 29.7 26.6 188 498-697 48-244 (264)
432 PF12775 AAA_7: P-loop contain 52.3 7.3 0.00016 43.2 1.5 27 72-99 24-50 (272)
433 KOG0579 Ste20-like serine/thre 52.3 5.5E+02 0.012 31.8 44.9 22 630-651 938-959 (1187)
434 PF08581 Tup_N: Tup N-terminal 52.1 1.7E+02 0.0037 26.0 11.5 20 600-619 55-74 (79)
435 PF12329 TMF_DNA_bd: TATA elem 52.0 1.6E+02 0.0036 25.7 10.0 32 638-669 37-68 (74)
436 PRK04328 hypothetical protein; 51.9 9.7 0.00021 41.6 2.4 27 72-98 10-39 (249)
437 cd01123 Rad51_DMC1_radA Rad51_ 51.7 9 0.00019 41.1 2.1 29 71-99 5-36 (235)
438 TIGR01618 phage_P_loop phage n 51.7 6.1 0.00013 42.3 0.7 18 82-99 12-29 (220)
439 PF06005 DUF904: Protein of un 51.5 1.7E+02 0.0036 25.6 10.8 50 860-909 19-68 (72)
440 KOG0340 ATP-dependent RNA heli 51.4 12 0.00027 42.0 3.0 42 74-117 38-82 (442)
441 TIGR02902 spore_lonB ATP-depen 51.3 6.8 0.00015 47.8 1.2 44 47-99 60-103 (531)
442 PRK11519 tyrosine kinase; Prov 51.2 4.5E+02 0.0098 33.5 17.4 159 717-935 261-422 (719)
443 PF12004 DUF3498: Domain of un 51.2 5 0.00011 47.7 0.0 50 533-586 374-423 (495)
444 PF06414 Zeta_toxin: Zeta toxi 50.5 6.7 0.00015 41.2 0.8 19 81-99 14-32 (199)
445 PRK09343 prefoldin subunit bet 50.4 2.4E+02 0.0052 27.1 11.8 28 590-617 16-43 (121)
446 PF00063 Myosin_head: Myosin h 50.4 9.7 0.00021 48.2 2.4 37 63-99 66-102 (689)
447 PRK04406 hypothetical protein; 50.3 97 0.0021 27.2 7.8 54 381-439 5-58 (75)
448 PRK11448 hsdR type I restricti 50.1 9.7 0.00021 50.5 2.4 29 71-100 423-451 (1123)
449 KOG0651 26S proteasome regulat 50.0 5.8 0.00013 43.9 0.3 53 45-98 125-182 (388)
450 KOG0744 AAA+-type ATPase [Post 49.9 14 0.00031 41.2 3.2 20 80-99 175-194 (423)
451 TIGR02231 conserved hypothetic 49.7 1.3E+02 0.0027 36.9 11.8 35 875-909 140-174 (525)
452 COG0606 Predicted ATPase with 49.7 6.6 0.00014 46.2 0.6 27 79-113 197-223 (490)
453 PRK11192 ATP-dependent RNA hel 49.6 8.8 0.00019 45.5 1.8 24 74-99 32-55 (434)
454 PF06048 DUF927: Domain of unk 49.6 12 0.00026 41.8 2.7 29 70-99 182-210 (286)
455 TIGR00348 hsdR type I site-spe 49.6 11 0.00023 47.5 2.6 30 69-99 246-280 (667)
456 PF03962 Mnd1: Mnd1 family; I 49.1 3.3E+02 0.0072 28.4 14.4 33 529-561 63-95 (188)
457 PRK10416 signal recognition pa 48.9 14 0.00031 41.8 3.2 18 82-99 114-131 (318)
458 PF09738 DUF2051: Double stran 48.9 3.8E+02 0.0082 30.2 14.2 71 838-911 101-171 (302)
459 PF13173 AAA_14: AAA domain 48.9 7.4 0.00016 37.6 0.8 16 84-99 4-19 (128)
460 PF04912 Dynamitin: Dynamitin 48.9 5E+02 0.011 30.4 25.8 22 378-399 92-113 (388)
461 PRK14962 DNA polymerase III su 48.7 11 0.00023 45.3 2.2 42 49-99 11-53 (472)
462 COG1660 Predicted P-loop-conta 48.6 18 0.00038 39.4 3.5 37 84-120 3-45 (286)
463 PF00735 Septin: Septin; Inte 48.6 5.4 0.00012 44.5 -0.3 21 79-99 1-21 (281)
464 PF06309 Torsin: Torsin; Inte 48.6 16 0.00034 35.5 2.9 31 69-99 36-70 (127)
465 KOG0735 AAA+-type ATPase [Post 48.5 23 0.0005 43.6 4.8 20 80-99 699-718 (952)
466 PRK09270 nucleoside triphospha 48.5 15 0.00033 39.5 3.2 37 63-99 13-50 (229)
467 PF05729 NACHT: NACHT domain 48.5 7.7 0.00017 38.6 0.9 16 84-99 2-17 (166)
468 PF15456 Uds1: Up-regulated Du 48.4 2.7E+02 0.0058 27.1 12.0 48 859-906 74-121 (124)
469 cd01120 RecA-like_NTPases RecA 48.4 6.8 0.00015 38.7 0.5 15 85-99 2-16 (165)
470 PF08581 Tup_N: Tup N-terminal 48.1 2E+02 0.0044 25.6 10.6 23 566-588 52-74 (79)
471 CHL00176 ftsH cell division pr 48.0 7.4 0.00016 48.4 0.8 17 83-99 217-233 (638)
472 PRK06067 flagellar accessory p 48.0 12 0.00026 40.3 2.3 30 70-99 10-42 (234)
473 PF06156 DUF972: Protein of un 48.0 89 0.0019 29.4 7.7 36 406-441 22-57 (107)
474 PF10498 IFT57: Intra-flagella 48.0 4.8E+02 0.01 30.2 15.2 9 317-325 87-95 (359)
475 PF06156 DUF972: Protein of un 47.8 1.2E+02 0.0026 28.7 8.5 53 849-901 5-57 (107)
476 PF09731 Mitofilin: Mitochondr 47.7 6.3E+02 0.014 31.2 29.8 35 666-700 364-398 (582)
477 PRK00409 recombination and DNA 47.6 2.7E+02 0.006 35.8 14.6 16 345-360 334-349 (782)
478 PRK04837 ATP-dependent RNA hel 47.5 9.8 0.00021 45.0 1.7 23 75-99 40-62 (423)
479 TIGR01243 CDC48 AAA family ATP 47.4 15 0.00032 47.0 3.3 52 47-99 173-229 (733)
480 PRK09361 radB DNA repair and r 47.4 13 0.00028 39.8 2.4 29 71-99 9-40 (225)
481 PF13476 AAA_23: AAA domain; P 47.3 7.8 0.00017 40.0 0.7 17 83-99 20-36 (202)
482 PRK05703 flhF flagellar biosyn 47.2 7.8 0.00017 45.9 0.8 17 83-99 222-238 (424)
483 KOG4460 Nuclear pore complex, 46.9 6E+02 0.013 30.7 17.0 30 645-674 659-688 (741)
484 PF02841 GBP_C: Guanylate-bind 46.9 4.6E+02 0.01 29.4 15.2 110 630-763 186-297 (297)
485 PF10236 DAP3: Mitochondrial r 46.9 12 0.00026 42.3 2.2 27 73-99 14-40 (309)
486 PF12774 AAA_6: Hydrolytic ATP 46.8 13 0.00029 40.1 2.4 43 83-125 33-83 (231)
487 PF10212 TTKRSYEDQ: Predicted 46.8 6E+02 0.013 30.7 27.5 20 288-307 212-231 (518)
488 PF03962 Mnd1: Mnd1 family; I 46.8 3.1E+02 0.0068 28.6 12.5 29 598-626 72-100 (188)
489 TIGR03752 conj_TIGR03752 integ 46.6 2.2E+02 0.0047 33.9 12.2 50 617-669 88-137 (472)
490 PRK08118 topology modulation p 46.6 8.7 0.00019 39.2 0.9 14 85-98 4-17 (167)
491 PRK11889 flhF flagellar biosyn 46.6 16 0.00034 42.6 3.0 17 83-99 242-258 (436)
492 KOG2391 Vacuolar sorting prote 46.5 1.3E+02 0.0028 34.0 9.7 16 604-619 255-270 (365)
493 cd01127 TrwB Bacterial conjuga 46.3 8.4 0.00018 45.4 0.8 18 82-99 42-59 (410)
494 PF14282 FlxA: FlxA-like prote 46.2 1.5E+02 0.0032 27.9 9.0 62 534-599 18-79 (106)
495 TIGR03017 EpsF chain length de 46.1 5.7E+02 0.012 30.2 28.5 303 255-634 35-367 (444)
496 KOG0982 Centrosomal protein Nu 46.0 5.5E+02 0.012 30.0 31.4 252 573-885 217-483 (502)
497 TIGR01650 PD_CobS cobaltochela 46.0 11 0.00024 42.7 1.7 49 49-99 33-81 (327)
498 KOG1532 GTPase XAB1, interacts 45.9 14 0.00029 40.4 2.2 27 83-122 20-46 (366)
499 PRK00106 hypothetical protein; 45.9 6.5E+02 0.014 30.8 25.4 165 565-758 40-204 (535)
500 PRK06995 flhF flagellar biosyn 45.9 8.2 0.00018 46.2 0.7 16 84-99 258-273 (484)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-110 Score=976.74 Aligned_cols=821 Identities=42% Similarity=0.583 Sum_probs=702.7
Q ss_pred eCCCCCcccccCCCceEEEeCCCCceeecC-ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCc
Q 001669 17 VRPLIGDERAQGCKDCVAVVPGKPQVQIGT-HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGK 95 (1034)
Q Consensus 17 iRP~~~~E~~~~~~~~v~~~~~~~~v~~~~-~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGK 95 (1034)
|||+...|..+||+.|+.+.|+.|+|.++. .+|+||+||... ++|.++|+.||.|+++.+|.|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~-~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDL-ESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCc-hHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 799999999999999999999999999975 689999999864 569999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCc-ccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCCCCCCCCCCcccCCCCC
Q 001669 96 TYTMGTGFKDGYQT-GIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVTVPGKP 174 (1034)
Q Consensus 96 T~Tm~g~~~~~~~~-Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1034)
|||||+++...... |+|||++.+||.+|..... ..|.|.|||+|||++.|+|||.|.. ...
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence 99999987655445 9999999999999998654 8899999999999999999998643 123
Q ss_pred CceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeeccCCCcCCCCCCCCC
Q 001669 175 PIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNES 254 (1034)
Q Consensus 175 ~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~~~~~~~~~~~~~~ 254 (1034)
++.+++ +.|++.+.|++++.|.+..++..+|..|...|++++|+||.+|||||+||||++++......
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 478888 88999999999999999999999999999999999999999999999999999998766432
Q ss_pred CCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCCCchhhhhhhhcCCC
Q 001669 255 MNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLGG 334 (1034)
Q Consensus 255 ~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRdSkLTrlLq~sLgg 334 (1034)
...++++|||||||||||.++|+++|.|++||++||.+|++|||||++|++.++ .+|||||||+|||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 336789999999999999999999999999999999999999999999998865 679999999999999999999
Q ss_pred CceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCccHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001669 335 NSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKER 414 (1034)
Q Consensus 335 ns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ei~~Lr~ql~~L~~eL~~~~~~~~~~~~~~L~e~ 414 (1034)
|++|+||+||||++.|++||++||+||+||++|+|||++|.|+...++..|+.||+.|+.+|....+.....++..+..+
T Consensus 285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e 364 (913)
T KOG0244|consen 285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE 364 (913)
T ss_pred CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999665444455788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcC-CCCcccHHHHHHHhh------------hhhccccccccc----C
Q 001669 415 IAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDG-SPCPLKSDGLKRSLN------------SIEQTDYQMGEN----I 477 (1034)
Q Consensus 415 i~~Le~en~~L~~el~~~~e~~~~l~~~~~~~~~~-~~l~~~i~eLe~~L~------------~~~~~~~~~~e~----~ 477 (1034)
+..++..+..+..++.+....|.....+...++.. ..+...+......+. .+...-.+++.. .
T Consensus 365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~ 444 (913)
T KOG0244|consen 365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG 444 (913)
T ss_pred hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence 99999999999999988888775554443322211 111111111110000 011111111111 0
Q ss_pred -----CCCChhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 478 -----TGDSREIDEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKE 550 (1034)
Q Consensus 478 -----~~~~~~~ee~~~e~E~~~~q~~l~~el~eL~~~L~~kE~el~~l~~~--~~~~lk~~~e~ki~eLe~ei~~l~~e 550 (1034)
.++...........++...|..+..++.+++++|..||..+..+... .....+++|+.++..|+.++..++.|
T Consensus 445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E 524 (913)
T KOG0244|consen 445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE 524 (913)
T ss_pred ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence 11111111224557788889999999999999999999999998753 46678999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 551 RDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQH 630 (1034)
Q Consensus 551 ~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~r 630 (1034)
++.+..++... ...+.++.+.+.++++.|+.++++|+++...+..|.+.+.+.+.....|..+|..+|.++++|++
T Consensus 525 ~~~l~~el~~~----~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 525 RSRLRNELNVF----NRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cHHHHHHHHhh----hHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 33889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cccccc
Q 001669 631 RIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSA-RENSAV 709 (1034)
Q Consensus 631 kl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~-r~~~~~ 709 (1034)
+|+++.+.|+.|++..+|+..+++.+.++.++++..++....++..+|+++++|+.+++++|++++..++... .....+
T Consensus 601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~~ 680 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTLG 680 (913)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988552 222211
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCCCCccccchhhhcCC
Q 001669 710 TNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMS 789 (1034)
Q Consensus 710 ~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~~~~~~~~~~~~~~~~ 789 (1034)
. ......+...|+.+|+|++..+.+++..+..+.+.|+.++.++..++...
T Consensus 681 ~------~~~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~----------------------- 731 (913)
T KOG0244|consen 681 D------NGASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG----------------------- 731 (913)
T ss_pred h------cCchhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 2 22566788999999999999999999999999999999999999986542
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001669 790 PNARMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWE------ 863 (1034)
Q Consensus 790 ~~~~~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e------ 863 (1034)
...|..|+.++...+++|++|...+..++.+.+.+. +|+++.++.+|++.+.++++.++..+++...
T Consensus 732 ----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~---~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~r 804 (913)
T KOG0244|consen 732 ----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM---RWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGSR 804 (913)
T ss_pred ----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH---HHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 378899999999999999999999999988776443 9999999999999999999999999998884
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001669 864 -KDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 913 (1034)
Q Consensus 864 -~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~ 913 (1034)
....+.+++.++.+....++..+.+......+.....+.+..++....+.
T Consensus 805 e~~~~~~~l~~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~~~~ 855 (913)
T KOG0244|consen 805 EKGIKKWDLTQKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKVWQM 855 (913)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44556666666665555666677777776666776666666666655543
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.7e-86 Score=783.79 Aligned_cols=360 Identities=41% Similarity=0.639 Sum_probs=313.5
Q ss_pred CCcceEEEEEeCCCCCcccccCCCceEEEeCCCCceee--c------CceeeeceeeCCCCCChHHHHHHhhhhhHHHhh
Q 001669 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI--G------THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLF 78 (1034)
Q Consensus 7 ~~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~--~------~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l 78 (1034)
...+|+|+|||||++.+|....++.+|.+.+....|.+ + .++|+||+||||.. +|.+||+.+|.|+|..|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes-~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPES-QQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcch-hHHHHHHHHHHHHHHHHh
Confidence 34689999999999999988888888877765443433 1 46899999999874 599999999999999999
Q ss_pred cCCceeEEEeccCCCCcceeccCCCC-----CCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCC
Q 001669 79 QGYNATVLAYGQTGSGKTYTMGTGFK-----DGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPP 153 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm~g~~~-----~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 153 (1034)
.|||||||||||||+||||||.|+.. .+..+|||||++.+||+.++.. +..|+|.|||+|+|||+|+|||+|.
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999988643 5678999999999999999874 3799999999999999999999986
Q ss_pred CCCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEE
Q 001669 154 CLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233 (1034)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i 233 (1034)
.... .....-+.+++. +..|||+|.|+.+++|+|+.|++.+|.+|...|.+++|.||.+|||||+||+|
T Consensus 204 ~~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 204 DTSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred cccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 4221 111111122222 66899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCC
Q 001669 234 TLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKE 313 (1034)
Q Consensus 234 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~ 313 (1034)
+|.-..... ....-+.+|+|+||||||||...++|+.+.|.+|++.||+||++||+||+||.+...
T Consensus 273 tvhike~t~-----------~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~--- 338 (1041)
T KOG0243|consen 273 TVHIKENTP-----------EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSG--- 338 (1041)
T ss_pred EEEEecCCC-----------cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCC---
Confidence 997643221 012446789999999999999999999999999999999999999999999998754
Q ss_pred CccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCc-cHHHHHHHHHHHHH
Q 001669 314 GVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPM-STEMLKMRQQLEFL 392 (1034)
Q Consensus 314 ~~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~-~~ei~~Lr~ql~~L 392 (1034)
|||||+|||||||||||||.++|+|||||||+..+++||++||.||.||++|+|||.+|+... ...++.|-.+|+.|
T Consensus 339 --HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerL 416 (1041)
T KOG0243|consen 339 --HIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERL 416 (1041)
T ss_pred --CCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997654 45678888899999
Q ss_pred HHHH
Q 001669 393 QAEL 396 (1034)
Q Consensus 393 ~~eL 396 (1034)
+..|
T Consensus 417 K~dl 420 (1041)
T KOG0243|consen 417 KRDL 420 (1041)
T ss_pred HHHH
Confidence 9888
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-89 Score=794.38 Aligned_cols=365 Identities=42% Similarity=0.639 Sum_probs=326.5
Q ss_pred CcceEEEEEeCCCCCcccccCCCceEEEeCCCCceeec-----CceeeeceeeCCCC------CChHHHHHHhhhhhHHH
Q 001669 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG-----THSFTFDHVYGSTG------SPSSAMFDECIAPLVDG 76 (1034)
Q Consensus 8 ~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~-----~~~f~FD~Vf~~~~------~~q~~v~~~~~~plv~~ 76 (1034)
..+|+|+|||||++.+|....+.++|.+..+..+|..+ ...|+||++||+.+ .+|..||+.+..|++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 45899999999999999988766544444443343322 24699999999653 34899999999999999
Q ss_pred hhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcc-cCccEEEEEeeeeechhhhhhcCC-CCC
Q 001669 77 LFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLK-DQTEFQLHVSFIEILKEEVRDLLD-PPC 154 (1034)
Q Consensus 77 ~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DLL~-~~~ 154 (1034)
+|.|||+||||||||||||||||+| +.++.++|||||+|++||.+|.... .+..|.|.|||+|||||+|+|||+ |.
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG-~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~- 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMG-FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK- 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeec-cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC-
Confidence 9999999999999999999999988 4466889999999999999998754 367899999999999999999998 43
Q ss_pred CCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEE
Q 001669 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1034)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~ 234 (1034)
.+++|+|||+|--|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||+
T Consensus 161 -----------------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIv 223 (1221)
T KOG0245|consen 161 -----------------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIV 223 (1221)
T ss_pred -----------------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEE
Confidence 256799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhcccc--CC
Q 001669 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKK--RK 312 (1034)
Q Consensus 235 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~--~~ 312 (1034)
+.|...... .......+|+|+|||||||||+..+|+.|.|+|||.+||+||++||+||+||++..+ .+
T Consensus 224 ftQk~~~~~----------~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ 293 (1221)
T KOG0245|consen 224 FTQKKHDQD----------TGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKK 293 (1221)
T ss_pred EEeeecccc----------CCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCC
Confidence 999765432 113567899999999999999999999999999999999999999999999998653 34
Q ss_pred CCccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCccHHHHHHHHHHHHH
Q 001669 313 EGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFL 392 (1034)
Q Consensus 313 ~~~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ei~~Lr~ql~~L 392 (1034)
+..+||||||-||+||+++|||||+|+|||++||++.||+|||+|||||+|||+|+|+++||.||....|+.|+++|..|
T Consensus 294 ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rL 373 (1221)
T KOG0245|consen 294 KSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARL 373 (1221)
T ss_pred CCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 001669 393 QAELCARGG 401 (1034)
Q Consensus 393 ~~eL~~~~~ 401 (1034)
+..|...+.
T Consensus 374 ksll~~~~~ 382 (1221)
T KOG0245|consen 374 KSLLRAQGL 382 (1221)
T ss_pred HHHHhcccc
Confidence 999965443
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-89 Score=784.97 Aligned_cols=356 Identities=47% Similarity=0.704 Sum_probs=328.6
Q ss_pred CCcceEEEEEeCCCCCcccccCCCceEEEeCCCCceee---------cCceeeeceeeCCCCCChHHHHHHhhhhhHHHh
Q 001669 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGL 77 (1034)
Q Consensus 7 ~~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~---------~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~ 77 (1034)
.+++|+|+||+||+...+...++..++.+++...++.+ .+++|+||+||+++ ++|++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~-stQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSD-STQDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCC-CCHHHHHHHHhHHHHHHH
Confidence 46799999999999999998888888888777666554 34789999999966 559999999999999999
Q ss_pred hcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCC
Q 001669 78 FQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNK 157 (1034)
Q Consensus 78 l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 157 (1034)
++|||+||||||||||||||||.|+ ++...|||||++.+||..|....+...|.|+|||+|||||.|+|||+|.+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~--- 156 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN--- 156 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---
Confidence 9999999999999999999999998 47889999999999999999987777999999999999999999999753
Q ss_pred CCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEe
Q 001669 158 PDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 237 (1034)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q 237 (1034)
.+.+.|++++..||||.|++++.|.|++++..+|..|..+|.+++|.||..|||||+||||+|++
T Consensus 157 ---------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~ 221 (574)
T KOG4280|consen 157 ---------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIES 221 (574)
T ss_pred ---------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEe
Confidence 24699999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccc
Q 001669 238 MRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHV 317 (1034)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~i 317 (1034)
..... +.......|+|+|||||||||..+|++.|.|++|+.+||+||++||+||++|+++.+ +||
T Consensus 222 ~~~~~-----------~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HI 286 (574)
T KOG4280|consen 222 SEKSD-----------GGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THI 286 (574)
T ss_pred ecccC-----------CCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCC
Confidence 33211 112456789999999999999999999999999999999999999999999999875 399
Q ss_pred cCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCccHHHHHHHHHHHHHHHHHH
Q 001669 318 PYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELC 397 (1034)
Q Consensus 318 PyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ei~~Lr~ql~~L~~eL~ 397 (1034)
||||||||+||||+|||||+|+|||||+|++.+++||++||+||+||+.|+|||+||.|+....+..|+.+|+.|+.+|.
T Consensus 287 PYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 287 PYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred CcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred H
Q 001669 398 A 398 (1034)
Q Consensus 398 ~ 398 (1034)
.
T Consensus 367 ~ 367 (574)
T KOG4280|consen 367 P 367 (574)
T ss_pred c
Confidence 4
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-83 Score=714.55 Aligned_cols=338 Identities=44% Similarity=0.685 Sum_probs=312.9
Q ss_pred CCCCcceEEEEEeCCCCCcccccCCCceEEEeCCCCceeecC----ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcC
Q 001669 5 GGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGT----HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG 80 (1034)
Q Consensus 5 ~~~~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~~----~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G 80 (1034)
-++.|+|+|+||+||+++.|...|......+.++...|.+.. .+|.||+||.|++ +|++||+.++.|+|++||.|
T Consensus 3 d~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pna-tQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 3 DSAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNA-TQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCc-cHHHHHHHHHHHHHHHHhcc
Confidence 347899999999999999998888776655556566676665 8999999999875 49999999999999999999
Q ss_pred CceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCCCC
Q 001669 81 YNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDT 160 (1034)
Q Consensus 81 ~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 160 (1034)
||+||||||||||||||||.|..+++...|||||++++||++|........|.|.|||||||+|+|+|||+|.
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~------- 154 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE------- 154 (607)
T ss_pred cceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc-------
Confidence 9999999999999999999998888788899999999999999998888899999999999999999999864
Q ss_pred CCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeec
Q 001669 161 ANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 240 (1034)
Q Consensus 161 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~ 240 (1034)
+.++.|++|.+.+++|.|++++.|.+++++++++..|..+|+++.|+||.+|||||.||+|+|.|.+.
T Consensus 155 ------------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~ 222 (607)
T KOG0240|consen 155 ------------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV 222 (607)
T ss_pred ------------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999654
Q ss_pred cCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCC
Q 001669 241 LSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 320 (1034)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyR 320 (1034)
.. ....+|+|+||||||||++.++|+.|.-+.|+.+||+||.|||+||++|+++.+ +|||||
T Consensus 223 e~--------------~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~----shipYR 284 (607)
T KOG0240|consen 223 ED--------------KRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPK----SHIPYR 284 (607)
T ss_pred cc--------------hhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCC----CCCcch
Confidence 33 557889999999999999999999999999999999999999999999999864 699999
Q ss_pred CchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCccH
Q 001669 321 DSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMST 380 (1034)
Q Consensus 321 dSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ 380 (1034)
||||||||+|+|||||+|++|+|++|+..|..||.+||+|++||+.|+|.+.+|......
T Consensus 285 DSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e 344 (607)
T KOG0240|consen 285 DSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAE 344 (607)
T ss_pred hhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHH
Confidence 999999999999999999999999999999999999999999999999999999765543
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=8.2e-82 Score=754.80 Aligned_cols=355 Identities=40% Similarity=0.604 Sum_probs=305.6
Q ss_pred CCcceEEEEEeCCCCCcccccCCCceEEEeCCCCceeecCceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEE
Q 001669 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVL 86 (1034)
Q Consensus 7 ~~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ 86 (1034)
.+++|+|+|||||+...|. |.. ++... .+..+.+..+.|+||+||++.+ +|.+||+.++.|+|+++|+|||+|||
T Consensus 96 ~ds~VkV~VRVRPl~~~E~--g~~-iV~~~-s~dsl~I~~qtFtFD~VFdp~a-TQedVFe~vv~PLV~svLdGyNaTIF 170 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGEE--GEM-IVQKM-SNDSLTINGQTFTFDSIADPES-TQEDIFQLVGAPLVENCLAGFNSSVF 170 (1320)
T ss_pred CCCCeEEEEEcCCCCCccC--CCe-eEEEc-CCCeEEEeCcEEeCCeeeCCCC-CHHHHHHHHHHHHHHHHhcCCcceee
Confidence 3679999999999998863 333 33333 3456778889999999999875 59999999999999999999999999
Q ss_pred EeccCCCCcceeccCCCC-------CCCCcccHhHHHHHHHHHHHhc-----ccCccEEEEEeeeeechhhhhhcCCCCC
Q 001669 87 AYGQTGSGKTYTMGTGFK-------DGYQTGIIPLVMNVLFSKIETL-----KDQTEFQLHVSFIEILKEEVRDLLDPPC 154 (1034)
Q Consensus 87 ayG~tgSGKT~Tm~g~~~-------~~~~~Glipr~~~~LF~~i~~~-----~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 154 (1034)
|||||||||||||+|+.+ ....+|||||++.+||..|... .....|.|+|||+|||||.|||||+|.
T Consensus 171 AYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~- 249 (1320)
T PLN03188 171 AYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPS- 249 (1320)
T ss_pred cCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccc-
Confidence 999999999999999653 2457899999999999999752 234579999999999999999999863
Q ss_pred CCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEE
Q 001669 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1034)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~ 234 (1034)
...+.|++++.++++|.|++++.|.|++++..+|..|..+|++++|.+|..|||||+||+|+
T Consensus 250 ------------------~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~ 311 (1320)
T PLN03188 250 ------------------QKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCV 311 (1320)
T ss_pred ------------------cCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEE
Confidence 23588999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCC
Q 001669 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEG 314 (1034)
Q Consensus 235 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~ 314 (1034)
|++...... +.......|+|+|||||||||.+.+++.|.+++|+.+||+||++||+||.+|+.....++.
T Consensus 312 Ves~~k~~~----------dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~ 381 (1320)
T PLN03188 312 VESRCKSVA----------DGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQ 381 (1320)
T ss_pred EEEeecccC----------CCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCC
Confidence 987543211 1113456899999999999999999999999999999999999999999999976544456
Q ss_pred ccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCccHHHHHHHHHHHHHHH
Q 001669 315 VHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQA 394 (1034)
Q Consensus 315 ~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ei~~Lr~ql~~L~~ 394 (1034)
.||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+||++|+|+|++|.... ..+..|++.|..|+.
T Consensus 382 ~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~-~~vn~LrelIr~Lk~ 460 (1320)
T PLN03188 382 RHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ-DDVNFLREVIRQLRD 460 (1320)
T ss_pred CcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh-hhHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999997643 223344444444444
Q ss_pred HH
Q 001669 395 EL 396 (1034)
Q Consensus 395 eL 396 (1034)
+|
T Consensus 461 EL 462 (1320)
T PLN03188 461 EL 462 (1320)
T ss_pred HH
Confidence 44
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-78 Score=688.25 Aligned_cols=361 Identities=43% Similarity=0.642 Sum_probs=321.8
Q ss_pred CcceEEEEEeCCCCCcccccCCCceEEEeCCCCcee-----------ecCceeeeceeeCCCC------CChHHHHHHhh
Q 001669 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQ-----------IGTHSFTFDHVYGSTG------SPSSAMFDECI 70 (1034)
Q Consensus 8 ~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~-----------~~~~~f~FD~Vf~~~~------~~q~~v~~~~~ 70 (1034)
+.+|+|+|||||++.+|......+.|.+......+. -++++|.||++|++.+ +.|+.||+...
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 568999999999999998766665555554433322 2468999999999763 34899999999
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhccc-CccEEEEEeeeeechhhhhhc
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDL 149 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DL 149 (1034)
..+|+++|+|||+||||||||||||||||.| ...++|||||++..||.+|..... ...|.|.|||+|||||++|||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmG---t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMG---TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeec---cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 9999999999999999999999999999977 456799999999999999987654 568999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceE
Q 001669 150 LDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHA 229 (1034)
Q Consensus 150 L~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~ 229 (1034)
|+|.. .+..+.+++++-.|++|.||++..|+|++++..++..|+++|+++.|+||..|||||+
T Consensus 160 LdPk~-----------------ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKG-----------------SSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCC-----------------CcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 99864 2356899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccc
Q 001669 230 IFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDK 309 (1034)
Q Consensus 230 if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~ 309 (1034)
||.|.|.|+-..... . ..-...|+|.+||||||||+.++|+.|.|++||.+||+||.+||.||++|++.+
T Consensus 223 VFslvvtQ~l~D~kt-g---------~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLYDLKT-G---------HSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEecccc-C---------cchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 999999986543221 1 122457899999999999999999999999999999999999999999999865
Q ss_pred cCC-CCccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCccHHHHHHHHH
Q 001669 310 KRK-EGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQ 388 (1034)
Q Consensus 310 ~~~-~~~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ei~~Lr~q 388 (1034)
..+ +..+||||||-||+||+|+|||||+|+||+||||+.+||+||++|||||.|||+|+|..+||.||...-|..||.+
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReE 372 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREE 372 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHH
Confidence 433 4569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 001669 389 LEFLQAELCA 398 (1034)
Q Consensus 389 l~~L~~eL~~ 398 (1034)
++.|+.+|..
T Consensus 373 ve~lr~qL~~ 382 (1714)
T KOG0241|consen 373 VEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHhh
Confidence 9999999954
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-78 Score=723.18 Aligned_cols=349 Identities=46% Similarity=0.699 Sum_probs=305.8
Q ss_pred CCcceEEEEEeCCCCCcccccCCCceEEEeCCCCceee----------cCceeeeceeeCCCCCChHHHHHHhhhhhHHH
Q 001669 7 EDCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI----------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDG 76 (1034)
Q Consensus 7 ~~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~----------~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~ 76 (1034)
....|.|+|||||+.+.+...+.. |.....++..+.. .+..|.||+||+++++ |.+||+.++.|+|++
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~ 81 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDR-SDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLS 81 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCc-cceEecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHH
Confidence 446899999999999986443332 2222222222111 0378999999998765 899999999999999
Q ss_pred hhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCC
Q 001669 77 LFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLN 156 (1034)
Q Consensus 77 ~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 156 (1034)
|+.|||+||||||||||||||||.| ...+|||||+++.+||..|.... ...|.|.|||+|||||.|+|||+|..
T Consensus 82 ~l~G~N~TVFAYG~TgSGKTyTM~G---~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~-- 155 (675)
T KOG0242|consen 82 VLEGFNATVFAYGQTGSGKTYTMSG---SEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG-- 155 (675)
T ss_pred HhcCcccceeeecCCCCCCceEEec---cCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC--
Confidence 9999999999999999999999977 45669999999999999999866 78999999999999999999998742
Q ss_pred CCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEE
Q 001669 157 KPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 236 (1034)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~ 236 (1034)
+++.|+||+.++++|.||++..|.|++++..+|..|..+|+++.|++|..|||||+||+|+|.
T Consensus 156 -----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~ 218 (675)
T KOG0242|consen 156 -----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVE 218 (675)
T ss_pred -----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEE
Confidence 449999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCcc
Q 001669 237 QMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVH 316 (1034)
Q Consensus 237 q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~ 316 (1034)
+..+..+ . ..|+|+|||||||||+.+|++.|.|++||.+||+||++||+||++|+++... .|
T Consensus 219 s~~~~~~--------------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~---~h 280 (675)
T KOG0242|consen 219 SRGREAS--------------S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRP---RH 280 (675)
T ss_pred ecccccc--------------c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHcccccc---CC
Confidence 8654321 1 5688999999999999999999999999999999999999999999988542 39
Q ss_pred ccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCccHHH-HHHHHHHHHHHHH
Q 001669 317 VPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEM-LKMRQQLEFLQAE 395 (1034)
Q Consensus 317 iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ei-~~Lr~ql~~L~~e 395 (1034)
|||||||||||||++|||||+|+|||||+|+..+|+||.+||+||+||++|++++.+|.......+ ..++.++..|+.+
T Consensus 281 ipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e 360 (675)
T KOG0242|consen 281 IPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAE 360 (675)
T ss_pred CCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987665543 4445888888888
Q ss_pred HHH
Q 001669 396 LCA 398 (1034)
Q Consensus 396 L~~ 398 (1034)
+..
T Consensus 361 ~~~ 363 (675)
T KOG0242|consen 361 LER 363 (675)
T ss_pred HHh
Confidence 843
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.8e-77 Score=677.33 Aligned_cols=325 Identities=43% Similarity=0.618 Sum_probs=289.4
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCCceeec--CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEE
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG--THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLA 87 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~--~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~a 87 (1034)
+|+|+|||||+...|...+...|+.+.++...+... .+.|.||+||++.+ +|++||+.++.|+|+.+|+|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNT-NQEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCC-CHHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 699999999999999877777788776654443332 47999999999875 599999999999999999999999999
Q ss_pred eccCCCCcceeccCCCCC-----CCCcccHhHHHHHHHHHHHhcc----cCccEEEEEeeeeechhhhhhcCCCCCCCCC
Q 001669 88 YGQTGSGKTYTMGTGFKD-----GYQTGIIPLVMNVLFSKIETLK----DQTEFQLHVSFIEILKEEVRDLLDPPCLNKP 158 (1034)
Q Consensus 88 yG~tgSGKT~Tm~g~~~~-----~~~~Glipr~~~~LF~~i~~~~----~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 158 (1034)
||||||||||||+|+... ...+|||||++++||..+.... ....|.|+|||+|||||+|||||+|.
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~----- 155 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT----- 155 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC-----
Confidence 999999999999997643 2478999999999999987542 34679999999999999999999763
Q ss_pred CCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEee
Q 001669 159 DTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 238 (1034)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~ 238 (1034)
...+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 156 --------------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 156 --------------SRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred --------------CCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 235899999999999999999999999999999999999999999999999999999999999875
Q ss_pred eccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCcccc
Q 001669 239 RKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVP 318 (1034)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iP 318 (1034)
..... ......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.... .+..|||
T Consensus 222 ~~~~~------------~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~-~~~~~ip 288 (337)
T cd01373 222 EKKAS------------STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAH-GKQRHVP 288 (337)
T ss_pred ecCCC------------CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhcc-CCCCccC
Confidence 44221 1245679999999999999999999999999999999999999999999987543 2256999
Q ss_pred CCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcc
Q 001669 319 YRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367 (1034)
Q Consensus 319 yRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I 367 (1034)
|||||||+||+|+|||||+|+|||||||+..+++||++||+||+||+.|
T Consensus 289 yR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6.7e-77 Score=673.02 Aligned_cols=322 Identities=49% Similarity=0.728 Sum_probs=292.0
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCCce----------------eecCceeeeceeeCCCCCChHHHHHHhhhhh
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQV----------------QIGTHSFTFDHVYGSTGSPSSAMFDECIAPL 73 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v----------------~~~~~~f~FD~Vf~~~~~~q~~v~~~~~~pl 73 (1034)
+|+|+|||||+.+.|...+...|+.+..+...+ ...++.|+||+||++.+ +|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~-~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETS-TQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCC-CHHHHHHHHHHHH
Confidence 589999999999999888888888776543211 11247899999999775 5999999999999
Q ss_pred HHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCC
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPP 153 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 153 (1034)
|+++++|||+||||||||||||||||+|+. .++|||||++++||+.++.......|.|+|||+|||||.|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 999999999999999999999999998853 67999999999999999987777899999999999999999999863
Q ss_pred CCCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEE
Q 001669 154 CLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 233 (1034)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i 233 (1034)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCC
Q 001669 234 TLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKE 313 (1034)
Q Consensus 234 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~ 313 (1034)
+|.+..... +.......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+...+ .
T Consensus 218 ~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRTA-----------SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecCC-----------CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 999865432 112457889999999999999999999999999999999999999999999998764 3
Q ss_pred CccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcc
Q 001669 314 GVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367 (1034)
Q Consensus 314 ~~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I 367 (1034)
..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4.3e-75 Score=659.50 Aligned_cols=326 Identities=36% Similarity=0.581 Sum_probs=287.2
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCCceee-----------------cCceeeeceeeCCCCCChHHHHHHhhhh
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI-----------------GTHSFTFDHVYGSTGSPSSAMFDECIAP 72 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~-----------------~~~~f~FD~Vf~~~~~~q~~v~~~~~~p 72 (1034)
+|+|+|||||+.+.|...+...|+.+..+. .+.+ ..+.|.||+||++.+ +|++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~-tq~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNT-TQKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCC-CHHHHHHHHHHH
Confidence 799999999999999877777787765433 2322 246899999999875 599999999999
Q ss_pred hHHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCC
Q 001669 73 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDP 152 (1034)
Q Consensus 73 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 152 (1034)
+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.. |.|.|||+|||||+|||||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999998854 6799999999999999876 999999999999999999987
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEE
Q 001669 153 PCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 232 (1034)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~ 232 (1034)
.... ...+.++.|+++++++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5321 012457999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCC
Q 001669 233 ITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRK 312 (1034)
Q Consensus 233 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~ 312 (1034)
|+|.+.....+. . ..........|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+......
T Consensus 218 i~v~~~~~~~~~---~---~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSDG---D---VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCccc---c---cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 999886543210 0 0111246778999999999999999999999999999999999999999999999865443
Q ss_pred -CCccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHh
Q 001669 313 -EGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 365 (1034)
Q Consensus 313 -~~~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar 365 (1034)
+..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=8.8e-75 Score=661.50 Aligned_cols=337 Identities=46% Similarity=0.667 Sum_probs=299.0
Q ss_pred cceEEEEEeCCCCCcccccCCCceEEEeCCCCceee---------cCceeeeceeeCCCC------CChHHHHHHhhhhh
Q 001669 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------GTHSFTFDHVYGSTG------SPSSAMFDECIAPL 73 (1034)
Q Consensus 9 ~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~---------~~~~f~FD~Vf~~~~------~~q~~v~~~~~~pl 73 (1034)
++|+|+|||||+...|...+...|+.+.+....+.. ....|.||+||++.+ ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 479999999999999988888877776653222221 235899999999761 45999999999999
Q ss_pred HHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhccc-CccEEEEEeeeeechhhhhhcCCC
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLDP 152 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~ 152 (1034)
|+++++|||+||||||+|||||||||+|+. .++|||||++++||+.+..... ...|.|.|||+|||+|+|||||++
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~---~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYK---EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 999999999999999999999999998854 4699999999999999987654 578999999999999999999987
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEE
Q 001669 153 PCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 232 (1034)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~ 232 (1034)
.. +....+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+
T Consensus 158 ~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~ 221 (356)
T cd01365 158 KK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFT 221 (356)
T ss_pred Cc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEE
Confidence 42 12346899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccC-
Q 001669 233 ITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKR- 311 (1034)
Q Consensus 233 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~- 311 (1034)
|+|.+...... ........|+|+|||||||||...++..|.+++|+.+||+||.+|++||.+|+.....
T Consensus 222 l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~ 291 (356)
T cd01365 222 IVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAK 291 (356)
T ss_pred EEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 99988654321 1124577899999999999999999999999999999999999999999999886532
Q ss_pred --CCCccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccc
Q 001669 312 --KEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 374 (1034)
Q Consensus 312 --~~~~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN 374 (1034)
++..||||||||||+||+++|||||+|+||+||||+..+++||++||+||+|+++|+|+|++|
T Consensus 292 ~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 292 SKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred ccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 345799999999999999999999999999999999999999999999999999999999886
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.2e-74 Score=658.26 Aligned_cols=333 Identities=44% Similarity=0.682 Sum_probs=301.3
Q ss_pred cceEEEEEeCCCCCcccccCCCceEEEeCCCCceee--------cCceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcC
Q 001669 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI--------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG 80 (1034)
Q Consensus 9 ~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~--------~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G 80 (1034)
++|+|+|||||+.+.|...++..++.+...+.+|.+ ..+.|.||+||++.. +|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~-~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEA-DQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCC-CHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999987888888888776666655 357899999999765 59999999999999999999
Q ss_pred CceeEEEeccCCCCcceeccCCCCC--------CCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCC
Q 001669 81 YNATVLAYGQTGSGKTYTMGTGFKD--------GYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDP 152 (1034)
Q Consensus 81 ~n~ti~ayG~tgSGKT~Tm~g~~~~--------~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 152 (1034)
||+||||||+|||||||||+|+... ...+|||||++.+||..+... ...|.|.|||+|||+|+|||||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997654 456899999999999999874 568999999999999999999987
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCceeEec--CCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEE
Q 001669 153 PCLNKPDTANGHTGKVTVPGKPPIQIRET--SNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAI 230 (1034)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~i 230 (1034)
.. ....++.|+++ ..++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 43 12456999999 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhcccc
Q 001669 231 FTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKK 310 (1034)
Q Consensus 231 f~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~ 310 (1034)
|+|+|.+...... .......|+|+||||||||+.+++++.+.+++|+..||+||.+|++||.+|+...
T Consensus 223 ~~i~i~~~~~~~~-----------~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 223 FSITIHIKETTIS-----------GEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred EEEEEEEeccCCC-----------CCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 9999988543211 1133567999999999999999999999999999999999999999999998765
Q ss_pred CCCCccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccC
Q 001669 311 RKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRD 376 (1034)
Q Consensus 311 ~~~~~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d 376 (1034)
.|||||+|+||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|+|.+|.+
T Consensus 291 ----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 291 ----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred ----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 39999999999999999999999999999999999999999999999999999999999975
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.6e-74 Score=655.89 Aligned_cols=337 Identities=64% Similarity=0.991 Sum_probs=306.1
Q ss_pred cceEEEEEeCCCCCcccccCCCceEEEeCCCCceeec-CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEE
Q 001669 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG-THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLA 87 (1034)
Q Consensus 9 ~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~-~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~a 87 (1034)
++|+|+||+||+...|...++..|+.+.++++++.++ .+.|.||+||++.+ +|++||+.++.|+|+.+++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPST-SQEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCC-CHHHHHHHHHHHHHHHHhCCCccceee
Confidence 5899999999999999888889999999999998887 68999999999765 599999999999999999999999999
Q ss_pred eccCCCCcceeccCCCCC---CCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCCCCCCCC
Q 001669 88 YGQTGSGKTYTMGTGFKD---GYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164 (1034)
Q Consensus 88 yG~tgSGKT~Tm~g~~~~---~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 164 (1034)
||+|||||||||+|+... ...+|||||++++||..++.......|.|.|||+|||+|.|||||.+..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999987642 5789999999999999999877678999999999999999999998642
Q ss_pred CCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeeccCCC
Q 001669 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPV 244 (1034)
Q Consensus 165 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~~~~ 244 (1034)
...+++.|++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.....+.
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12456899999999999999999999999999999999999999999999999999999999999997764321
Q ss_pred cCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCCCchh
Q 001669 245 SLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 324 (1034)
Q Consensus 245 ~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRdSkL 324 (1034)
.. +..+.......|+|+||||||||+.+++++.|.+++|+.+||+||.+|++||.+|+..++ +..|||||+|+|
T Consensus 224 ~~----~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 AP----MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred cc----ccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 10 111223567889999999999999999999999999999999999999999999998763 346999999999
Q ss_pred hhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhccc
Q 001669 325 TRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQ 368 (1034)
Q Consensus 325 TrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~ 368 (1034)
|+||+++||||++|+||+||||+..+++||++||+||+|||+||
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999996
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.6e-73 Score=641.57 Aligned_cols=323 Identities=47% Similarity=0.698 Sum_probs=293.9
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCCceeec---------CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcC
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG---------THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG 80 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~---------~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G 80 (1034)
+|+|+|||||+.+.|...++..++.+.++..+|.+. .+.|.||+||++.+ +|++||+.++.|+|+.+++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNS-TQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCc-cHHHHHHHHHHHHHHHHhCC
Confidence 799999999999999888888888887776665542 46799999999765 58999999999999999999
Q ss_pred CceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCCCC
Q 001669 81 YNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDT 160 (1034)
Q Consensus 81 ~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 160 (1034)
||+||||||+|||||||||+|+..+...+|||||++++||..+....+ ..|.|.|||+|||+|+|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 999999999999999999999877677899999999999999987544 7899999999999999999997632
Q ss_pred CCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeec
Q 001669 161 ANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 240 (1034)
Q Consensus 161 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~ 240 (1034)
..++.|++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 23588999999999999999999999999999999999999999999999999999999999988654
Q ss_pred cCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCC
Q 001669 241 LSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 320 (1034)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyR 320 (1034)
.. ........|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|+.+++ .|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~----~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKS----THIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCC----CcCCCc
Confidence 32 012446789999999999999999999999999999999999999999999987543 599999
Q ss_pred CchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcc
Q 001669 321 DSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367 (1034)
Q Consensus 321 dSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I 367 (1034)
+|+||+||+++|||||+|+||+||+|...+++||++||+||+|||+|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=7.9e-73 Score=639.03 Aligned_cols=320 Identities=46% Similarity=0.708 Sum_probs=294.4
Q ss_pred cceEEEEEeCCCCCcccccCCCceEEEeCCCCceeec----CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCcee
Q 001669 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG----THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNAT 84 (1034)
Q Consensus 9 ~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~----~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~t 84 (1034)
++|+|+|||||+...|...+...|+.+.++ ..|.+. .+.|.||+||++++ +|++||+.++.|+|+.+++|+|+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNT-TQEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCC-CHHHHHHHHHHHHHHHHHcCccce
Confidence 489999999999999977777888877555 556665 57999999999865 599999999999999999999999
Q ss_pred EEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCCCCCCCC
Q 001669 85 VLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 164 (1034)
|||||+|||||||||+|+......+|||||++++||+.+........|.|++||+|||+|.|+|||++.
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------- 148 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----------- 148 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-----------
Confidence 999999999999999998776678999999999999999887777789999999999999999999863
Q ss_pred CCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeeccCCC
Q 001669 165 TGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPV 244 (1034)
Q Consensus 165 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~~~~ 244 (1034)
...+.+++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.....
T Consensus 149 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-- 218 (325)
T cd01369 149 --------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET-- 218 (325)
T ss_pred --------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC--
Confidence 2458899999999999999999999999999999999999999999999999999999999998865321
Q ss_pred cCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCCCchh
Q 001669 245 SLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKL 324 (1034)
Q Consensus 245 ~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRdSkL 324 (1034)
.....|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|+.+++ .|||||||+|
T Consensus 219 ------------~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 219 ------------GSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred ------------CCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 346789999999999999999999999999999999999999999999998653 5999999999
Q ss_pred hhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcc
Q 001669 325 TRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367 (1034)
Q Consensus 325 TrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I 367 (1034)
|+||+++|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 283 T~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 17
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=4.8e-73 Score=637.94 Aligned_cols=308 Identities=42% Similarity=0.630 Sum_probs=277.9
Q ss_pred cceEEEEEeCCCCCcccccCCCceEEEeCCCCceeec-------------CceeeeceeeCCCCCChHHHHHHhhhhhHH
Q 001669 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG-------------THSFTFDHVYGSTGSPSSAMFDECIAPLVD 75 (1034)
Q Consensus 9 ~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~-------------~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~ 75 (1034)
.+|+|+|||||+.+.|...+...++.+.++ ..+.+. .+.|+||+||++.+ +|++||+.++.|+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vf~~~~~plv~ 78 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAV-TNEEVYRSTVKPLIP 78 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCC-CHHHHHHHHHHHHHH
Confidence 379999999999999987666666655544 233221 47899999999765 489999999999999
Q ss_pred HhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCC
Q 001669 76 GLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCL 155 (1034)
Q Consensus 76 ~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 155 (1034)
.+++|||+||||||||||||||||+|+. .++|||||++++||+.++... ..|.|+|||+|||+|.|+|||++
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~--- 150 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND--- 150 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC---
Confidence 9999999999999999999999998854 679999999999999998754 68999999999999999999975
Q ss_pred CCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEE
Q 001669 156 NKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 235 (1034)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v 235 (1034)
..++.|++++.++++|.|++++.|.|++|+..+|..|..+|++++|.+|..|||||+||+|+|
T Consensus 151 -----------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v 213 (322)
T cd01367 151 -----------------RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIIL 213 (322)
T ss_pred -----------------ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEE
Confidence 235899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccC-CchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCC
Q 001669 236 EQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTG-SDGLRFKEGVHINRGLLALGNVISALGDDKKRKEG 314 (1034)
Q Consensus 236 ~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~-~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~ 314 (1034)
.+... ....|+|+||||||||+...++ ..|.+++|+.+||+||++|++||.+|+..+
T Consensus 214 ~~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~----- 271 (322)
T cd01367 214 KNKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK----- 271 (322)
T ss_pred EEecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-----
Confidence 87432 3467999999999999998765 578999999999999999999999999865
Q ss_pred ccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHh
Q 001669 315 VHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 365 (1034)
Q Consensus 315 ~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar 365 (1034)
.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus 272 ~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 272 AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 499999999999999999999999999999999999999999999999985
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=9.8e-72 Score=627.08 Aligned_cols=308 Identities=40% Similarity=0.622 Sum_probs=278.4
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCC----ceee-------cCceeeeceeeCCCCCChHHHHHHhhhhhHHHhh
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKP----QVQI-------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLF 78 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~----~v~~-------~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l 78 (1034)
+|+|+|||||+.+.| .+...|+.+..+++ .+.+ .++.|.||+||++.+ +|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCE--EDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTEC-TQEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCccc--cCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCC-CHHHHHHHHHHHHHHHHh
Confidence 589999999999888 44567777655432 3332 246899999999775 599999999999999999
Q ss_pred cCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCC
Q 001669 79 QGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKP 158 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 158 (1034)
+|||+||||||+|||||||||+|+. .++|||||++++||+.++.. ...|.|++||+|||+|.|||||++.
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~---~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~----- 147 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP---NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPA----- 147 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc---CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCC-----
Confidence 9999999999999999999998864 47999999999999988763 3689999999999999999999863
Q ss_pred CCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEee
Q 001669 159 DTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 238 (1034)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~ 238 (1034)
...+.|++++.+++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 148 --------------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 148 --------------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred --------------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 245889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCcccc
Q 001669 239 RKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVP 318 (1034)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iP 318 (1034)
.. .....|+|+||||||||+..+++..|.+++|+.+||+||.+|++||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 32 22578999999999999999999999999999999999999999999998764 4999
Q ss_pred CCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHh
Q 001669 319 YRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 365 (1034)
Q Consensus 319 yRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar 365 (1034)
||||+||+||+|+|||||+|+||+||||...+++||++||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.6e-71 Score=625.90 Aligned_cols=319 Identities=39% Similarity=0.580 Sum_probs=280.9
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCCceee---------------cCceeeeceeeCCCCCChHHHHHHhhhhhH
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------------GTHSFTFDHVYGSTGSPSSAMFDECIAPLV 74 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~---------------~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv 74 (1034)
+|+|+||+||+...+. .++.+.+.+.++++ ....|.||+||++ ++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~--~~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN--ASQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC--CCHHHHHHHHHHHHH
Confidence 5899999999997542 22333333322211 2357999999997 459999999999999
Q ss_pred HHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCC
Q 001669 75 DGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPC 154 (1034)
Q Consensus 75 ~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 154 (1034)
+.+++|||+||||||+|||||||||+|+..+..++|||||++.+||..++.. ....|.|+|||+|||+|.|||||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999997766678999999999999999874 456899999999999999999998753
Q ss_pred CCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEE
Q 001669 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1034)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~ 234 (1034)
.+ ....+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 11 12346799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCC
Q 001669 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEG 314 (1034)
Q Consensus 235 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~ 314 (1034)
|.+..... .......|+|+|||||||||..++++.|..++|+.+||+||.+|++||.+|+.+. .
T Consensus 220 v~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSREA------------GSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecCC------------CCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 99864322 1245678999999999999999999999999999999999999999999999765 2
Q ss_pred ccccCCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHh
Q 001669 315 VHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 365 (1034)
Q Consensus 315 ~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar 365 (1034)
.|||||||+||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 499999999999999999999999999999999999999999999999984
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.5e-71 Score=623.21 Aligned_cols=317 Identities=43% Similarity=0.688 Sum_probs=284.4
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCCceeec----CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeE
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG----THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATV 85 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~----~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti 85 (1034)
+|+|+||+||+...|. .+...++.+..+ ..+.+. ...|.||+||++.+ +|++||+.++.|+|+++++|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~-~q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGES-TNREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCC-CHHHHHHHHHHHHHHHHHCCCceeE
Confidence 5999999999999886 344555555554 444442 58999999999765 5999999999999999999999999
Q ss_pred EEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCCCCCCCCC
Q 001669 86 LAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHT 165 (1034)
Q Consensus 86 ~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~ 165 (1034)
||||+|||||||||+|+ ..++|||||++++||..+.... ...|.|+|||+|||||.|||||+|..
T Consensus 78 ~ayG~tgSGKT~T~~G~---~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGD---EQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCC---CCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 99999999999999875 4679999999999999998754 56899999999999999999998642
Q ss_pred CcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeeccCCCc
Q 001669 166 GKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVS 245 (1034)
Q Consensus 166 ~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~~~~~ 245 (1034)
.++.|++++.+++++.|++++.|.|++++..+|..|..+|++++|.+|..|||||+||+|+|.+.....+
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-- 212 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-- 212 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC--
Confidence 4688999999999999999999999999999999999999999999999999999999999998654321
Q ss_pred CCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCCCchhh
Q 001669 246 LGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 325 (1034)
Q Consensus 246 ~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRdSkLT 325 (1034)
.......|+|+||||||||+....+ .+.+++|+.+||+||.+|++||.+|+..+. ..|||||||+||
T Consensus 213 ---------~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 213 ---------ESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred ---------CCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 1245778999999999999999988 899999999999999999999999998752 359999999999
Q ss_pred hhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcc
Q 001669 326 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367 (1034)
Q Consensus 326 rlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I 367 (1034)
+||+++|||||+|+|||||||...+++||++||+||+|+++|
T Consensus 280 ~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.1e-69 Score=612.60 Aligned_cols=321 Identities=43% Similarity=0.655 Sum_probs=287.6
Q ss_pred CcceEEEEEeCCCCCcccccCCCceEEEeCCC-Cceeec-----CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCC
Q 001669 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGK-PQVQIG-----THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY 81 (1034)
Q Consensus 8 ~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~-~~v~~~-----~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~ 81 (1034)
.++|+|+|||||+...|. .....++.+.++. ..+.+. .+.|.||+||++++ +|++||+. +.|+|+.+++|+
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~-v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDA-SQEDVFEE-VSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCC-CHHHHHHH-HHHHHHHHhCCC
Confidence 478999999999998885 3334455555553 444442 36899999999765 59999998 699999999999
Q ss_pred ceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhccc-CccEEEEEeeeeechhhhhhcCCCCCCCCCCC
Q 001669 82 NATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLDPPCLNKPDT 160 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 160 (1034)
|+||||||+|||||||||+|+. ..+|||||++++||..+..... ...|.|.+||+|||+|+|+|||++..
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------ 148 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------ 148 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc------
Confidence 9999999999999999998854 6799999999999999988654 67899999999999999999998642
Q ss_pred CCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeec
Q 001669 161 ANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 240 (1034)
Q Consensus 161 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~ 240 (1034)
..++++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 ----------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~ 218 (329)
T cd01366 149 ----------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNL 218 (329)
T ss_pred ----------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcC
Confidence 1245799999999999999999999999999999999999999999999999999999999999988653
Q ss_pred cCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCC
Q 001669 241 LSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYR 320 (1034)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyR 320 (1034)
. ......|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|+.+. .|||||
T Consensus 219 ~--------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~-----~~ipyr 279 (329)
T cd01366 219 Q--------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKD-----SHVPYR 279 (329)
T ss_pred C--------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCC-----CcCCCc
Confidence 2 245678999999999999999999999999999999999999999999998763 499999
Q ss_pred CchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccC
Q 001669 321 DSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQN 369 (1034)
Q Consensus 321 dSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~ 369 (1034)
+|+||+||+++|||+++|+||+||||...+++||++||+||+|+++|+|
T Consensus 280 ~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 280 NSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred ccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999986
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5.9e-69 Score=611.13 Aligned_cols=327 Identities=51% Similarity=0.769 Sum_probs=298.0
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCC-ceee-------cCceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCC
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKP-QVQI-------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY 81 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~-~v~~-------~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~ 81 (1034)
+|+|+|||||+...|...+...|+.+.++.+ .|.+ ..+.|+||+||++.+ +|++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATA-SQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCC-ChHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999998888888888876653 3443 247899999999765 599999999999999999999
Q ss_pred ceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCCCCC
Q 001669 82 NATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTA 161 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~ 161 (1034)
|+|||+||+|||||||||+|+ ..++||||+++++||..+........|.|+|||+|||+|.|+|||++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT---PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC---CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 999999999999999999875 456899999999999999887667899999999999999999999863
Q ss_pred CCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeecc
Q 001669 162 NGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 241 (1034)
Q Consensus 162 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~ 241 (1034)
+.++.|++++++++++.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~ 217 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN 217 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC
Confidence 346899999999999999999999999999999999999999999999999999999999999976321
Q ss_pred CCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCCC
Q 001669 242 SPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRD 321 (1034)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRd 321 (1034)
........|+|+||||||+|+....++.|.+++|+..||+||.+|++||.+|+++. +..|||||+
T Consensus 218 ------------~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~ 282 (335)
T smart00129 218 ------------SSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRD 282 (335)
T ss_pred ------------CCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcC
Confidence 11356789999999999999999999999999999999999999999999999753 246999999
Q ss_pred chhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccc
Q 001669 322 SKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 374 (1034)
Q Consensus 322 SkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN 374 (1034)
|+||+||+++|||+++|+||+||||+..+++||++||+||+++++|+|+|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.1e-69 Score=646.72 Aligned_cols=326 Identities=40% Similarity=0.621 Sum_probs=287.3
Q ss_pred CcceEEEEEeCCCCCcccccCCCceEEEeCCCCceee---------cCceeeeceeeCCCCCChHHHHHHhhhhhHHHhh
Q 001669 8 DCCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI---------GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLF 78 (1034)
Q Consensus 8 ~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~---------~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l 78 (1034)
.|+|||+|||||+.+.+....+...+. .++...+.+ ..+.|.||+||+|.++ |++||.+ +.|+|..+|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~l 389 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVID-TEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSAL 389 (670)
T ss_pred hcCceEEEEecCCCccccccccccccc-cCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHh
Confidence 479999999999999886543222221 221111211 1235999999998865 9999988 899999999
Q ss_pred cCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCC
Q 001669 79 QGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKP 158 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 158 (1034)
+|||+||||||||||||||||.|+ ++.++|||||++..||..+......+.|.+.+||+|||||.|+|||++..
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~---- 463 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES---- 463 (670)
T ss_pred cCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc----
Confidence 999999999999999999999886 56789999999999999999988899999999999999999999998642
Q ss_pred CCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEee
Q 001669 159 DTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 238 (1034)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~ 238 (1034)
....+.|+++++|.++|.|++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...
T Consensus 464 -------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~ 530 (670)
T KOG0239|consen 464 -------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI 530 (670)
T ss_pred -------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc
Confidence 1235889999999999999999999999999999999999999999999999999999999999753
Q ss_pred eccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCcccc
Q 001669 239 RKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVP 318 (1034)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iP 318 (1034)
. ...+....+.|+|||||||||+.++++.|.|++|+.+||+||.+||+||.||+... .|||
T Consensus 531 ~--------------~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~-----~HiP 591 (670)
T KOG0239|consen 531 N--------------ELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKR-----SHIP 591 (670)
T ss_pred c--------------cCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcC-----CCCc
Confidence 2 12356678899999999999999999999999999999999999999999999843 4999
Q ss_pred CCCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccc
Q 001669 319 YRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 374 (1034)
Q Consensus 319 yRdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN 374 (1034)
|||||||+||+++|||+++|+|+++|||...++.||+++|+||.|++.+...+-..
T Consensus 592 yRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 592 YRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred ccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 99999999999999999999999999999999999999999999999998877543
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.1e-68 Score=584.75 Aligned_cols=326 Identities=38% Similarity=0.583 Sum_probs=285.8
Q ss_pred CCCCCcceEEEEEeCCCCCcccccCCCceEEEeCC------CCceee------cCceeeeceeeCCCCCChHHHHHHhhh
Q 001669 4 GGGEDCCVKVAVHVRPLIGDERAQGCKDCVAVVPG------KPQVQI------GTHSFTFDHVYGSTGSPSSAMFDECIA 71 (1034)
Q Consensus 4 ~~~~~~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~------~~~v~~------~~~~f~FD~Vf~~~~~~q~~v~~~~~~ 71 (1034)
++.+...|.|+||-||++..|.....-++|+|.+. +|...+ ..+.|.||++|+..++ ++.||..++.
T Consensus 203 ~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~ 281 (676)
T KOG0246|consen 203 DGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAK 281 (676)
T ss_pred CCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhh
Confidence 35666799999999999999987766666665332 222222 2478999999997765 8999999999
Q ss_pred hhHHHhhcCCceeEEEeccCCCCcceeccCCCCCC---CCcccHhHHHHHHHHHHHhc-ccCccEEEEEeeeeechhhhh
Q 001669 72 PLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDG---YQTGIIPLVMNVLFSKIETL-KDQTEFQLHVSFIEILKEEVR 147 (1034)
Q Consensus 72 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~---~~~Glipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIy~e~v~ 147 (1034)
|||..+|+|--+|+||||||||||||||||+|... ...||..++..++|..+..- -....+.|++||||||+.+||
T Consensus 282 PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvf 361 (676)
T KOG0246|consen 282 PLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVY 361 (676)
T ss_pred HHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchh
Confidence 99999999999999999999999999999999743 34799999999999988752 124579999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCc
Q 001669 148 DLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRS 227 (1034)
Q Consensus 148 DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRS 227 (1034)
|||++ +..|.+.||.+..|.|.||++..|.+.++++.+|+.|+..|++|.|..|..||||
T Consensus 362 DLL~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRS 421 (676)
T KOG0246|consen 362 DLLND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRS 421 (676)
T ss_pred hhhcc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccccccc
Confidence 99975 3458999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccc-cCCchhhhhhhHHHHhhhHHhHHHHHHhh
Q 001669 228 HAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKR-TGSDGLRFKEGVHINRGLLALGNVISALG 306 (1034)
Q Consensus 228 H~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~-t~~~g~r~kE~~~IN~SL~aL~~vi~aL~ 306 (1034)
|+||.|.+... .....+++|.||||||+||... +.++.+.-.||..||+||+||.-||++|+
T Consensus 422 HAvfQIilr~~-----------------~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg 484 (676)
T KOG0246|consen 422 HAVFQIILRKH-----------------GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALG 484 (676)
T ss_pred ceeEeeeeecC-----------------CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhc
Confidence 99999999641 1346889999999999999754 45667788899999999999999999998
Q ss_pred ccccCCCCccccCCCchhhhhhhhcCCC-CceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcc
Q 001669 307 DDKKRKEGVHVPYRDSKLTRLLQDSLGG-NSRTVMIACISPADINAEETLNTLKYANRARNIQNKPI 372 (1034)
Q Consensus 307 ~~~~~~~~~~iPyRdSkLTrlLq~sLgg-ns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~ 372 (1034)
.++. |+|||.||||.+|+|||-| ||+|+||+||||+..+++.||||||||+|++..-..+.
T Consensus 485 ~nk~-----H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 485 RNKS-----HLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CCCC-----CCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 7764 9999999999999999977 99999999999999999999999999999999866554
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-66 Score=591.92 Aligned_cols=333 Identities=37% Similarity=0.581 Sum_probs=290.0
Q ss_pred cceEEEEEeCCCCCcccccCCCceEEEeCCCCceee-------------c--CceeeeceeeCCCCCChHHHHHHhhhhh
Q 001669 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI-------------G--THSFTFDHVYGSTGSPSSAMFDECIAPL 73 (1034)
Q Consensus 9 ~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~-------------~--~~~f~FD~Vf~~~~~~q~~v~~~~~~pl 73 (1034)
.+|.|+||+||+... .+...|+.|......+.. + .+.|.|.+||+|.++ |.+||+.|+.|+
T Consensus 31 d~v~v~~rvrP~~~~---~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~pl 106 (809)
T KOG0247|consen 31 DPVLVVCRVRPLSDA---SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPL 106 (809)
T ss_pred cchheeEeecCCCCC---ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHH
Confidence 379999999999862 234456655544332211 1 257999999998765 999999999999
Q ss_pred HHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHh----------------------------
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIET---------------------------- 125 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~---------------------------- 125 (1034)
|.+++.|.|..+|+||.|||||||||.|+ ...+||+||+++.||+.|..
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~---~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGT---PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecC---CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999774 55689999999999998842
Q ss_pred ------------------------------------cccCccEEEEEeeeeechhhhhhcCCCCCCCCCCCCCCCCCccc
Q 001669 126 ------------------------------------LKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHTGKVT 169 (1034)
Q Consensus 126 ------------------------------------~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~ 169 (1034)
...+..|.|+|||+||||+.|||||.+.+....
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~----------- 252 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGK----------- 252 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccch-----------
Confidence 001235899999999999999999988643211
Q ss_pred CCCCC-CceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeeccCCCcCCC
Q 001669 170 VPGKP-PIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGD 248 (1034)
Q Consensus 170 ~~~~~-~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~~~~~~~~ 248 (1034)
.+ ...+++|.+|.++|.|+++|.|+|.+|++.+|..|.++|..++|..|..|||||+||+|.|.+.....
T Consensus 253 ---~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~------ 323 (809)
T KOG0247|consen 253 ---LQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ------ 323 (809)
T ss_pred ---hhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc------
Confidence 12 25689999999999999999999999999999999999999999999999999999999998865431
Q ss_pred CCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCCCchhhhhh
Q 001669 249 SSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLL 328 (1034)
Q Consensus 249 ~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRdSkLTrlL 328 (1034)
......+|.|.|||||||||..+|.+.|.|++|+.+||.||++||+||.+|...++.+...+|||||||||+++
T Consensus 324 ------~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlf 397 (809)
T KOG0247|consen 324 ------DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLF 397 (809)
T ss_pred ------ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHH
Confidence 12567889999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred hhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccc
Q 001669 329 QDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVN 374 (1034)
Q Consensus 329 q~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN 374 (1034)
+.+|.|..+++||+||+|.+.+|+|+++.|+||.-+..|.+++.++
T Consensus 398 q~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 398 KNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 9999999999999999999999999999999999999999988774
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.4e-67 Score=597.30 Aligned_cols=322 Identities=48% Similarity=0.733 Sum_probs=280.1
Q ss_pred EeCCCCCcccccCCCceEEEeCC---------CCceeecCceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEE
Q 001669 16 HVRPLIGDERAQGCKDCVAVVPG---------KPQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVL 86 (1034)
Q Consensus 16 RiRP~~~~E~~~~~~~~v~~~~~---------~~~v~~~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ 86 (1034)
||||+...|...+...++.+... ..........|.||+||++.+ +|++||+.++.|+|+.+|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDA-TQEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTS-THHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCC-CHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 89999999988887777765421 111122357899999999765 59999999999999999999999999
Q ss_pred EeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccC--ccEEEEEeeeeechhhhhhcCCCCCCCCCCCCCCC
Q 001669 87 AYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQ--TEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGH 164 (1034)
Q Consensus 87 ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~--~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 164 (1034)
|||+|||||||||+|+ .....+||||+++.+||..+...... ..|.|+|||+|||+|.|+|||+|..
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 148 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNN---------- 148 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTS----------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccc----------
Confidence 9999999999999886 34678999999999999999886554 6899999999999999999998753
Q ss_pred CCcccCCCCCCceeEecCCCc-EEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeeccCC
Q 001669 165 TGKVTVPGKPPIQIRETSNGV-ITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSP 243 (1034)
Q Consensus 165 ~~~~~~~~~~~l~i~e~~~~~-~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~~~ 243 (1034)
.+...++.|++++..+ ++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+......
T Consensus 149 -----~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 149 -----SKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp -----SSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred -----cccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 0123479999999865 9999999999999999999999999999999999999999999999999999765432
Q ss_pred CcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCC-chhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCCCc
Q 001669 244 VSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGS-DGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDS 322 (1034)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~-~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRdS 322 (1034)
. .......|+|+||||||+|+..++++ .+.+++|+..||+||.+|++||.+|+.. ....|||||+|
T Consensus 224 ~----------~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~vpyr~S 290 (335)
T PF00225_consen 224 D----------DEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG---SKQSHVPYRDS 290 (335)
T ss_dssp T----------EEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSSSCGGGS
T ss_pred c----------cccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc---ccchhhhhhcc
Confidence 0 00136889999999999999998886 4889999999999999999999999987 23459999999
Q ss_pred hhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcc
Q 001669 323 KLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNI 367 (1034)
Q Consensus 323 kLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I 367 (1034)
+||+||+|+|||||+|+||+||||...+++||++||+||+++|+|
T Consensus 291 kLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999987
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.8e-66 Score=586.11 Aligned_cols=318 Identities=48% Similarity=0.753 Sum_probs=285.0
Q ss_pred ceEEEEEeCCCCCcccccCCCceEEEeCCCCceeec---------CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcC
Q 001669 10 CVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQIG---------THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG 80 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~~---------~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G 80 (1034)
+|+|+|||||+...| ..+...|+.+.++ ..|.+. .+.|.||+||++.+ +|++||+.++.|+|+++++|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKDGRKAGPKSFTFDHVFDPNS-TQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCccccCcCceEEECCeEEcCCC-CHHHHHHHHHHHHHHHHhCC
Confidence 599999999999887 3455677776664 344442 37899999999765 59999999999999999999
Q ss_pred CceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhccc-CccEEEEEeeeeechhhhhhcCCCCCCCCCC
Q 001669 81 YNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLDPPCLNKPD 159 (1034)
Q Consensus 81 ~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 159 (1034)
+|+||||||+|||||||||+|+ ...+||||+++++||..+..... ...|.|++||+|||+|.|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGS---PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCC---CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 9999999999999999999875 46799999999999999987543 56899999999999999999998742
Q ss_pred CCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeee
Q 001669 160 TANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 239 (1034)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~ 239 (1034)
...++.|++++.+++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 24578999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccC
Q 001669 240 KLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPY 319 (1034)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPy 319 (1034)
.... ......|+|+||||||+|+...++..+.+++|+..||+||.+|++||.+|+.... ..||||
T Consensus 218 ~~~~------------~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTND------------GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCCC------------CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 4321 1147789999999999999999999999999999999999999999999998762 359999
Q ss_pred CCchhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHh
Q 001669 320 RDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRAR 365 (1034)
Q Consensus 320 RdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar 365 (1034)
|+|+||+||+|+|||+++|+||+||+|...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999985
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-59 Score=559.94 Aligned_cols=336 Identities=47% Similarity=0.707 Sum_probs=286.8
Q ss_pred cceEEEEEeCCCCCcccccCCCceEEEeCCCCceee--c-CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeE
Q 001669 9 CCVKVAVHVRPLIGDERAQGCKDCVAVVPGKPQVQI--G-THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATV 85 (1034)
Q Consensus 9 ~~v~V~vRiRP~~~~E~~~~~~~~v~~~~~~~~v~~--~-~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti 85 (1034)
..++|.+++.|-...+. +........+.. . ...|.||+||+|..+ |++||+.++.|+++.++.||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 22 SDIKSTIRIIPGELGER-------LINTSKKSHVSLEKSKEGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred cCceEEEeecCCCcchh-------eeecccccccccccccceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceE
Confidence 46778888888554431 111111111111 1 456999999998765 999999999999999999999999
Q ss_pred EEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechhhhhhcCCCCCCCCCCCCCCCC
Q 001669 86 LAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKEEVRDLLDPPCLNKPDTANGHT 165 (1034)
Q Consensus 86 ~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~ 165 (1034)
||||||||||||||.|. ...+||||+++..||+.++.......|.|.|||+|||||+++|||.|..
T Consensus 94 fayGqTgsgKtyt~~G~---~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~----------- 159 (568)
T COG5059 94 FAYGQTGSGKTYTMSGT---EEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNE----------- 159 (568)
T ss_pred EEEcccCCCceeEeecC---ccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcc-----------
Confidence 99999999999999875 4679999999999999999887777899999999999999999998753
Q ss_pred CcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeeccCCCc
Q 001669 166 GKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVS 245 (1034)
Q Consensus 166 ~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~~~~~ 245 (1034)
..+.++++..++++|.|++++.|.+.++++.+|..|..+|++++|.+|..|||||+||++++.+......
T Consensus 160 --------~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~-- 229 (568)
T COG5059 160 --------ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG-- 229 (568)
T ss_pred --------ccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc--
Confidence 1166899999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhhccccCCCCccccCCCchhh
Q 001669 246 LGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALGDDKKRKEGVHVPYRDSKLT 325 (1034)
Q Consensus 246 ~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRdSkLT 325 (1034)
....+++.||||||||++..++..+.|++||..||+||++||+||.+|.+. ++..|||||+||||
T Consensus 230 ------------~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~---~~~~~ipyReskLT 294 (568)
T COG5059 230 ------------TSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDK---KKSGHIPYRESKLT 294 (568)
T ss_pred ------------ceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhcc---ccCCccchhhhHHH
Confidence 222378999999999999999999999999999999999999999999874 23569999999999
Q ss_pred hhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccC-CccHHHHHHHHHHHH
Q 001669 326 RLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRD-PMSTEMLKMRQQLEF 391 (1034)
Q Consensus 326 rlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d-~~~~ei~~Lr~ql~~ 391 (1034)
|+|+++|||+++|+|||||+|+..++++|.+||+||+||+.|+|++.+|.. .....+..+..++..
T Consensus 295 RlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~ 361 (568)
T COG5059 295 RLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSE 361 (568)
T ss_pred HHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999962 223344444443333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=4.8e-47 Score=394.15 Aligned_cols=179 Identities=51% Similarity=0.807 Sum_probs=164.5
Q ss_pred HHHHhhhhhHHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeechh
Q 001669 65 MFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILKE 144 (1034)
Q Consensus 65 v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e 144 (1034)
||+.++ |+|+.+++|||+||||||+|||||||||+|+ ..++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~---~~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGK---REGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCC---CCCCCcchHHHHH--------------------------
Confidence 999999 9999999999999999999999999999885 3678999999987
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCC
Q 001669 145 EVRDLLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQS 224 (1034)
Q Consensus 145 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~S 224 (1034)
+..+|..|..+|.+++|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 67788999999999999999999
Q ss_pred CCceEEEEEEEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHH
Q 001669 225 SRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISA 304 (1034)
Q Consensus 225 SRSH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~a 304 (1034)
||||+||+|+|.+...... .......|+|+||||||||+.+.+++.+.+++|+.+||+||.+|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~~-----------~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALAS-----------ATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCCC-----------CccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999998665321 12456789999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCccccCCCchhhhhhhhcCCCCceeEEEeecCC
Q 001669 305 LGDDKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISP 346 (1034)
Q Consensus 305 L~~~~~~~~~~~iPyRdSkLTrlLq~sLggns~t~~I~~vsp 346 (1034)
|+... .||||||||||+||+|+|||||+|+||+||||
T Consensus 150 l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 150 LAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 98754 49999999999999999999999999999999
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.93 E-value=1.6e-21 Score=250.44 Aligned_cols=471 Identities=18% Similarity=0.228 Sum_probs=388.0
Q ss_pred cCCcccccCCccHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 001669 368 QNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQ 447 (1034)
Q Consensus 368 ~~kp~vN~d~~~~ei~~Lr~ql~~L~~eL~~~~~~~~~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l~~~~~~~~ 447 (1034)
+.||.+.......++.++..++..++.++.. .......++.....+..+...|..++....+.++..++.+..+.
T Consensus 826 kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~-----~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~ 900 (1930)
T KOG0161|consen 826 KVKPLLKVTKTEEEMRAKEEEIQKLKEELQK-----SESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLR 900 (1930)
T ss_pred HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888999999999999999965 45566778888899999999999999988888887776655333
Q ss_pred cCCCCcccHHHHHHHhhhhhcccccccccCCCCChhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 001669 448 DGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREIDEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTA 527 (1034)
Q Consensus 448 ~~~~l~~~i~eLe~~L~~~~~~~~~~~e~~~~~~~~~ee~~~e~E~~~~q~~l~~el~eL~~~L~~kE~el~~l~~~~~~ 527 (1034)
....+++..+..+... ..+.......+......+.+++.+|.+.+++.|..+..+...
T Consensus 901 ------~~k~~le~~l~~~~~~-------------~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~E--- 958 (1930)
T KOG0161|consen 901 ------AEKQELEKELKELKER-------------LEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELE--- 958 (1930)
T ss_pred ------HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 2234444444322211 001222333334444556788999999999998777666533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001669 528 ALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKS 607 (1034)
Q Consensus 528 ~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ 607 (1034)
+...+.+|+.|+.++..+++...+|.++.+.+ ++++.+|.. +|...+++.+.+.+.+.++
T Consensus 959 --k~~~e~~~~~l~~e~~~~~e~~~kL~kekk~l---------------Ee~~~~l~~---~l~~~eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen 959 --KNAAENKLKNLEEEINSLDENISKLSKEKKEL---------------EERIRELQD---DLQAEEEKAKSLNKAKAKL 1018 (1930)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999888888877766665 344444444 4788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHH
Q 001669 608 DEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK---LVLQRK 681 (1034)
Q Consensus 608 ee~~~~Le~ei~~~K~~k~~l~---rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~---~vlkrk 681 (1034)
+..+..++..++..++.+.++. +++..++..++++...+...+..|..++.+.+.++.+++.+++..+ +.++++
T Consensus 1019 e~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~ 1098 (1930)
T KOG0161|consen 1019 EQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQ 1098 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999998 8999999999999999999999999999999999999999999776 449999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 682 TEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELA 760 (1034)
Q Consensus 682 ~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~ 760 (1034)
++++.+.++.|.+.++.++ ..+++.++.++.+.++++.+. .++++.+.+..+.+.+.+...|+.
T Consensus 1099 i~eL~~~i~el~e~le~er---------------~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~ 1163 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAER---------------ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQ 1163 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 778889999999999999999 589999999999999999999999
Q ss_pred HHHhhhHHhhcCCCCCCccccchhhhcCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccH
Q 001669 761 VLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSM 840 (1034)
Q Consensus 761 ~L~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl 840 (1034)
.|++.++.+...++.........+.+.+ ..+..|++++...+..+.++...|+....++..+ +.++
T Consensus 1164 ~l~~~leee~~~~e~~~~~lr~~~~~~~--~el~~qle~l~~~k~~lekek~~lq~e~~~l~~e------------v~~~ 1229 (1930)
T KOG0161|consen 1164 KLRRDLEEETLDHEAQIEELRKKHADSL--AELQEQLEQLQKDKAKLEKEKSDLQREIADLAAE------------LEQL 1229 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 9999999998888776666666666666 6778999999999999999999999998888773 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 001669 841 ADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHN 917 (1034)
Q Consensus 841 ~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~ 917 (1034)
..++..+..+.+.++. ++.+++..+.++.+...++......+..+..++.+++++++..++.+++.....-+++
T Consensus 1230 ~~~k~~~e~~~k~~E~---~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ql 1303 (1930)
T KOG0161|consen 1230 SSEKKDLEKKDKKLEA---QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQL 1303 (1930)
T ss_pred hhhhccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766554 8888888999999999988888888999999999999999999999988887765554
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.80 E-value=4.9e-15 Score=191.51 Aligned_cols=410 Identities=22% Similarity=0.266 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcC--------CCCcccHHHHHHHhhhhhccccccccc
Q 001669 405 SDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDG--------SPCPLKSDGLKRSLNSIEQTDYQMGEN 476 (1034)
Q Consensus 405 ~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l~~~~~~~~~~--------~~l~~~i~eLe~~L~~~~~~~~~~~e~ 476 (1034)
...++.|++.+..+++.+.+|.++...+++++.++...+....+. ..++..+++++..|......+.
T Consensus 963 e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~----- 1037 (1930)
T KOG0161|consen 963 ENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRM----- 1037 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 345667778888888888888888888888887777666554433 4666677777777754443322
Q ss_pred CCCCChhhhHH--HHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 477 ITGDSREIDEV--AKEWEHTLLQNS---MDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQK 549 (1034)
Q Consensus 477 ~~~~~~~~ee~--~~e~E~~~~q~~---l~~el~eL~~~L~~kE~el~~l~~~--~~~~lk~~~e~ki~eLe~ei~~l~~ 549 (1034)
+.+.. ..+.++...+.. +.....+|+.++..++.++..+... +...+..++++.|++|+..|..+.+
T Consensus 1038 ------e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e 1111 (1930)
T KOG0161|consen 1038 ------ELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEE 1111 (1930)
T ss_pred ------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 445555555544 4557788999999999999888754 6788999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001669 550 ERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDL----------KKKQENQVQLLKQKQKSDEAAKRLQDEIQ 619 (1034)
Q Consensus 550 e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL----------~~k~~~~~~l~k~k~k~ee~~~~Le~ei~ 619 (1034)
+++. ++.++.++++.+.++...+.+|..++.+. .++++. ++.++++.+++....++..++
T Consensus 1112 ~le~--------er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~--e~~~l~~~leee~~~~e~~~~ 1181 (1930)
T KOG0161|consen 1112 ELEA--------ERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA--EVQKLRRDLEEETLDHEAQIE 1181 (1930)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHH
Confidence 9888 55567788888889999999999888833 344444 889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 620 FIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESR 699 (1034)
Q Consensus 620 ~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~ 699 (1034)
.+++.+.+-...+.+++++.++.++.+++++..|+.+......++..+..
T Consensus 1182 ~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~------------------------------ 1231 (1930)
T KOG0161|consen 1182 ELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSS------------------------------ 1231 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------
Confidence 99999999999999999999999999999999999888888888777665
Q ss_pred hhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCCCCcc
Q 001669 700 KSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGK 779 (1034)
Q Consensus 700 k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~~~~~~ 779 (1034)
.....+...+....+..|...++++..+....+.....++..|+..+
T Consensus 1232 ----------------~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l----------------- 1278 (1930)
T KOG0161|consen 1232 ----------------EKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEEL----------------- 1278 (1930)
T ss_pred ----------------hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-----------------
Confidence 22233334445555556666667777777777777777777777666
Q ss_pred ccchhhhcCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh--hhccccchhhcccHHHHHHHHHHHHHHHHHH
Q 001669 780 NGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERDR--LFTNRGRWNQLRSMADAKNLLQYMFNSLADA 857 (1034)
Q Consensus 780 ~~~~~~~~~~~~~~~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~--~~~~~~~~~~irsl~eak~~l~~l~~~~~~~ 857 (1034)
..++++.+..+..+.+.+..|.+++.++..... +....++-+.++++...+..|+...++..+.
T Consensus 1279 --------------~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1279 --------------SRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred --------------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666777777776643322 3444567778999999999998888777666
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001669 858 RC----QLWEKDIEIKEMKEQLKELVGL-LRQSEVRRKEVEEELKLREQAVAITLARSAS 912 (1034)
Q Consensus 858 r~----ql~e~~~~l~e~~~~~~el~~~-~~~le~e~~el~~~l~~~e~~~~~l~~~~~~ 912 (1034)
+. ++.+..+++.+|+.++++.... ...++..++.+...+.++++.+..+......
T Consensus 1345 ~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~ 1404 (1930)
T KOG0161|consen 1345 KNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNAS 1404 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66 7778899999999999977655 6788888888888888888877655554433
No 32
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.31 E-value=2.9e-13 Score=170.05 Aligned_cols=325 Identities=22% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 001669 501 DKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAH 578 (1034)
Q Consensus 501 ~~el~eL~~~L~~kE~el~~l~~~--~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~ 578 (1034)
.....+|...|..++.++..+... +..+.+..++++|++|+..|..|+++++. ++..+.++.+.+.++..
T Consensus 3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~--------Er~~R~kaek~r~dL~~ 74 (859)
T PF01576_consen 3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELES--------ERQARAKAEKQRRDLSE 74 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 345678888999999999888754 67888999999999999999999999999 88889999999999999
Q ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 579 KLKSLEAQIL----------DLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREK 648 (1034)
Q Consensus 579 kl~eLe~ql~----------dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~ek 648 (1034)
.|.+|..++. ++.++++. .|.++++.+++....++..+..+++++.+.+..|.++++..+..+..++|
T Consensus 75 ELe~l~~~Lee~~~~t~aq~E~~kkrE~--El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK 152 (859)
T PF01576_consen 75 ELEELKERLEEAGGATQAQIELNKKREA--ELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEK 152 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhCcHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 56677776 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHH
Q 001669 649 ELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWL 728 (1034)
Q Consensus 649 e~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl 728 (1034)
+...|..+...+..++..++. +....++..+...
T Consensus 153 ~k~~l~~e~~dL~~~l~~~~k----------------------------------------------~k~~~Ek~~K~lE 186 (859)
T PF01576_consen 153 EKSQLEAELDDLQAQLDSLQK----------------------------------------------AKQEAEKKRKQLE 186 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHH----------------------------------------------HHHHHHhHHhhHH
Confidence 999999888888888777765 3334445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCCCCccccchhhhcCChHHHHHHHHHHHHHHHhhh
Q 001669 729 DHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISS 808 (1034)
Q Consensus 729 ~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~Le~~~~~~~ 808 (1034)
.+..+...++++..+.+..+.....++..|+..|.+ ++++++..+..+.
T Consensus 187 ~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~-------------------------------qLee~e~~~~~l~ 235 (859)
T PF01576_consen 187 AQLNELQAKLEESERQRNELTEQKAKLQSENSELTR-------------------------------QLEEAESQLSQLQ 235 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHH
Confidence 677777778999999999999999999999988844 4444455555555
Q ss_pred hhHHHHHHHHHHHHHhhh--hhccccchhhcccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HH
Q 001669 809 NSLVAMASQLSEAEERDR--LFTNRGRWNQLRSMADAKNLLQYMFNSLADARC----QLWEKDIEIKEMKEQLKELV-GL 881 (1034)
Q Consensus 809 ~~~~~l~~~l~e~e~~~~--~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~----ql~e~~~~l~e~~~~~~el~-~~ 881 (1034)
+.+..|.+++.++..... +....++-..++++......|...++.....+. ++...+.+|..|+.+++.-. ..
T Consensus 236 r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~ 315 (859)
T PF01576_consen 236 REKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQR 315 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 555556666665533211 233345666788888888888777765444444 66677899999999999543 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001669 882 LRQSEVRRKEVEEELKLREQAVAITLARSAS 912 (1034)
Q Consensus 882 ~~~le~e~~el~~~l~~~e~~~~~l~~~~~~ 912 (1034)
...++..++.+.+.+.++++.+..+.....+
T Consensus 316 ~EelEeaKKkL~~~L~el~e~le~~~~~~~~ 346 (859)
T PF01576_consen 316 TEELEEAKKKLERKLQELQEQLEEANAKVSS 346 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777666555554443
No 33
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.15 E-value=5.3e-12 Score=158.79 Aligned_cols=240 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHH
Q 001669 646 REKELLQLRKEGRRNEYERHKLQALNQRQK---LVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEK 722 (1034)
Q Consensus 646 ~eke~~qLk~e~rk~e~el~~Lq~~~e~q~---~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~ 722 (1034)
+++.+..|...+.+++.++..+..+++.++ +.++++++|+.+.+..|.++|+.++ ..+.+.+
T Consensus 2 ~~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er---------------~~R~kae 66 (859)
T PF01576_consen 2 LERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESER---------------QARAKAE 66 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 456778899999999999999999999776 4599999999999999999999999 8888999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCCCCccccchhhhcCChHHHHHHHHHHH
Q 001669 723 SFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLE 801 (1034)
Q Consensus 723 ~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~Le 801 (1034)
+.++.|..|++.+. .+.++.+....+++.++++..||..|+++++.....++.....+..++.+.+ .+++.+|+.++
T Consensus 67 k~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~--~eL~eqle~lq 144 (859)
T PF01576_consen 67 KQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAV--AELNEQLEQLQ 144 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHH
Confidence 99999999999999 6999999999999999999999999999999999999988888888888877 67789999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 802 NMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGL 881 (1034)
Q Consensus 802 ~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~~~~el~~~ 881 (1034)
+.+..+++.+..|...+.++.. .+.++..++.......+.+.. ++.+.+.++.+..+.+.++...
T Consensus 145 k~k~~lEK~k~~l~~e~~dL~~------------~l~~~~k~k~~~Ek~~K~lE~---qL~El~~klee~er~~~el~~~ 209 (859)
T PF01576_consen 145 KQKAKLEKEKSQLEAELDDLQA------------QLDSLQKAKQEAEKKRKQLEA---QLNELQAKLEESERQRNELTEQ 209 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHHHHhHHhhHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 578888899988888887777 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 001669 882 LRQSEVRRKEVEEELKLREQAVAITLARSASGNLHN 917 (1034)
Q Consensus 882 ~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~ 917 (1034)
...+..+..+|.+++++.+..++.+.+..++..+++
T Consensus 210 k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qL 245 (859)
T PF01576_consen 210 KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQL 245 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888876665
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=99.01 E-value=8.5e-05 Score=96.18 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=11.6
Q ss_pred EEeccCCCCcceec
Q 001669 86 LAYGQTGSGKTYTM 99 (1034)
Q Consensus 86 ~ayG~tgSGKT~Tm 99 (1034)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999998875
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=98.99 E-value=0.00022 Score=92.38 Aligned_cols=54 Identities=20% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001669 860 QLWEKDIEIKEMKE-----QLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 913 (1034)
Q Consensus 860 ql~e~~~~l~e~~~-----~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~ 913 (1034)
++.++..++.+++. ..+.+...+..++.....+...+...+..+..+.......
T Consensus 628 ~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~ 686 (880)
T PRK02224 628 RLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAV 686 (880)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444432 2223333444455555556666666667777777666653
No 36
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.93 E-value=0.00054 Score=89.45 Aligned_cols=232 Identities=16% Similarity=0.170 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 526 TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQ 605 (1034)
Q Consensus 526 ~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~ 605 (1034)
+...+..++.+|..+..++.+++.++-.|..++..+. +.........+.++..+..++..++ .....+.+...
T Consensus 949 lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~----~e~~~~~k~~e~~~~~~~~e~~sl~---ne~~~~~~~~s 1021 (1822)
T KOG4674|consen 949 LDETRLELEAKIESLHKKITSLEEELSELEKEIENLR----EELELSTKGKEDKLLDLSREISSLQ---NELKSLLKAAS 1021 (1822)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccccchhhhHHHHHHHhHHHH---HHHHHHHHHHH
Confidence 3444566777777777777777777777766666652 1111111112223333333333222 11122222222
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 606 KSDEAAKRLQDEIQFI----KAQKVQLQ-------------HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 606 k~ee~~~~Le~ei~~~----K~~k~~l~-------------rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
.....+..+...+..+ +..+.+-. .+++++...+......+.+....+.............-+
T Consensus 1022 ~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~ 1101 (1822)
T KOG4674|consen 1022 QANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKE 1101 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHH
Confidence 2222222222222222 21111111 233333333333333333333333333344444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 001669 669 ALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV-NVHEVRFDYEK 747 (1034)
Q Consensus 669 ~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~-~l~e~~~~~~~ 747 (1034)
..++++...+..++..+...++-|-..++..-........+..+. + ...--.+-..+.+|.+++. ++.=+......
T Consensus 1102 ~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~--g-~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~ 1178 (1822)
T KOG4674|consen 1102 DALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLL--G-LSDLQNIVSFLRKEKEIAETKLDTLKRENAR 1178 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc--c-hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Confidence 666677788888888888888888888876543222101000010 1 1223445678888888877 46666666777
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 001669 748 QSQVRAALAEELAVLKQVDE 767 (1034)
Q Consensus 748 ~~e~r~~l~~EL~~L~~~~e 767 (1034)
+...-+.+...++.|+..+.
T Consensus 1179 L~qq~~~~~k~i~dL~~sL~ 1198 (1822)
T KOG4674|consen 1179 LKQQVASLNRTIDDLQRSLT 1198 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777765443
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=98.90 E-value=0.0009 Score=86.83 Aligned_cols=17 Identities=47% Similarity=0.729 Sum_probs=13.3
Q ss_pred CCceeEEEeccCCCCcceec
Q 001669 80 GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 80 G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|+|+ -+|++|||||..|
T Consensus 24 g~~~---i~G~nG~GKStil 40 (880)
T PRK03918 24 GINL---IIGQNGSGKSSIL 40 (880)
T ss_pred CcEE---EEcCCCCCHHHHH
Confidence 5543 6799999998765
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.84 E-value=0.00053 Score=80.47 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001669 858 RCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS 912 (1034)
Q Consensus 858 r~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~ 912 (1034)
+.+|.+...+|.|++..+.-+....+++..++++|.+-..-.++.+..+...+-+
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~ 463 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWK 463 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4577777777777777777666666677788888888888888887777655533
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=0.0017 Score=87.18 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.7
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
+++-+|++|||||..+
T Consensus 30 ~~~I~G~NGaGKTTil 45 (1311)
T TIGR00606 30 LTILVGPNGAGKTTII 45 (1311)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4466899999999765
No 40
>PRK03918 chromosome segregation protein; Provisional
Probab=98.81 E-value=0.0018 Score=84.06 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001669 638 QFRQWKASREKELLQLRKEGRRNEYERHKL 667 (1034)
Q Consensus 638 ~~r~~k~~~eke~~qLk~e~rk~e~el~~L 667 (1034)
.+......+++++..|+.+.+..+.++..+
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 41
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.71 E-value=0.0028 Score=83.14 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHH
Q 001669 500 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHK 579 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~k 579 (1034)
+..+...|...+...+.-...+. ....+.+..++.+|.+|+..+..+......-.. ..+.+...+...
T Consensus 771 l~~e~~~L~~~l~~lQt~~~~~e-~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~-----------~~r~l~~~~~~~ 838 (1822)
T KOG4674|consen 771 LSAEQESLQLLLDNLQTQKNELE-ESEMATKDKCESRIKELERELQKLKKKLQEKSS-----------DLRELTNSLEKQ 838 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhH
Confidence 33344444444433333222222 223455677777777777776666655444322 233334444444
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001669 580 LKSLEAQILDLK----KKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHR-IKQEAEQFRQWKASREKELLQLR 654 (1034)
Q Consensus 580 l~eLe~ql~dL~----~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rk-l~~E~~~~r~~k~~~eke~~qLk 654 (1034)
+......+.++. .-......+.....+++.++..|+..|..++.+...+.-+ ...+....-.......-++..|+
T Consensus 839 l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~ 918 (1822)
T KOG4674|consen 839 LENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLK 918 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 444444444332 3333444555566777888888888888888777766532 22222222222222233344445
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q 001669 655 KEGRRNEYERHKLQALNQRQ 674 (1034)
Q Consensus 655 ~e~rk~e~el~~Lq~~~e~q 674 (1034)
.++.....+|...+..+...
T Consensus 919 ~~L~~a~s~i~~yqe~~~s~ 938 (1822)
T KOG4674|consen 919 EELTDALSQIREYQEEYSSL 938 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544433
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.70 E-value=0.0028 Score=77.26 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001669 590 LKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKEL 650 (1034)
Q Consensus 590 L~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~---rkl~~E~~~~r~~k~~~eke~ 650 (1034)
+-..-.++..+.+.+++++-++..|+..|.++.++++++. +.+..|.+++.+......+-.
T Consensus 396 ~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~ 459 (1195)
T KOG4643|consen 396 YEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSL 459 (1195)
T ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344455667777788899999999999999999999987 666677666665555444433
No 43
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.51 E-value=0.019 Score=76.90 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.3
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
+++-+||+|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 3456799999999988
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.46 E-value=0.0084 Score=70.67 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001669 410 VLKERIAWLEAANEDLCRELHEYRSRCTDVEQ 441 (1034)
Q Consensus 410 ~L~e~i~~Le~en~~L~~el~~~~e~~~~l~~ 441 (1034)
.|++....|..++..|..+|...++.+..+..
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566666666555555554443
No 45
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=0.025 Score=76.15 Aligned_cols=24 Identities=13% Similarity=0.410 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 001669 499 SMDKELNELNRRLEEKESEMKLVG 522 (1034)
Q Consensus 499 ~l~~el~eL~~~L~~kE~el~~l~ 522 (1034)
.+..++.++..+|+.++.++....
T Consensus 796 r~~~ei~~l~~qie~l~~~l~~~~ 819 (1311)
T TIGR00606 796 RFQMELKDVERKIAQQAAKLQGSD 819 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 445677777777777766655433
No 46
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.45 E-value=0.0083 Score=80.37 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=11.8
Q ss_pred EEeccCCCCcceec
Q 001669 86 LAYGQTGSGKTYTM 99 (1034)
Q Consensus 86 ~ayG~tgSGKT~Tm 99 (1034)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999876
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.44 E-value=0.0066 Score=75.89 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 667 LQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYE 746 (1034)
Q Consensus 667 Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~ 746 (1034)
+...++.+...++..++...+..+++ .|..+ +.+-.++..++.+...+++
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~----------------------------e~~~~e~~~~lseek~ar~ 717 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL--RLQDK----------------------------EAQMKEIESKLSEEKSARE 717 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH----------------------------HHHHHHHHHHhcccccHHH
Confidence 66677777777777777777777777 22211 2244445556667777788
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 001669 747 KQSQVRAALAEELAVLKQVDEF 768 (1034)
Q Consensus 747 ~~~e~r~~l~~EL~~L~~~~e~ 768 (1034)
+....+.++..++..|+.+.-.
T Consensus 718 k~e~~~~~i~~e~e~L~~d~~~ 739 (1317)
T KOG0612|consen 718 KAENLLLEIEAELEYLSNDYKQ 739 (1317)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 8888888899999988776444
No 48
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.41 E-value=0.0063 Score=74.84 Aligned_cols=81 Identities=26% Similarity=0.406 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcccCCcccccCCccHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 354 TLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYR 433 (1034)
Q Consensus 354 Tl~TL~fa~rar~I~~kp~vN~d~~~~ei~~Lr~ql~~L~~eL~~~~~~~~~~~~~~L~e~i~~Le~en~~L~~el~~~~ 433 (1034)
+..|=+|-.+|+.|+--+++- +....+..+++.|+..+.-|..... +...+. +|......|.+++....
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~sv--s~~~i~-------~l~~~~~~lr~~l~~~~ 1245 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAPSV--SAEDIA-------QLASATESLRRQLQALT 1245 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCCCc--cHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 566778899999998877765 4556677777777777776633221 233333 34444444555555555
Q ss_pred HHhHHHHHHhhh
Q 001669 434 SRCTDVEQRETD 445 (1034)
Q Consensus 434 e~~~~l~~~~~~ 445 (1034)
+.+...+..+.+
T Consensus 1246 e~L~~~E~~Lsd 1257 (1758)
T KOG0994|consen 1246 EDLPQEEETLSD 1257 (1758)
T ss_pred hhhhhhhhhhhh
Confidence 555555554443
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.39 E-value=0.035 Score=74.51 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=17.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 727 WLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLK 763 (1034)
Q Consensus 727 wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~ 763 (1034)
.+..+++.+. .+.+....+..+......+..++..+.
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 711 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 244445555555444444444444443
No 50
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.38 E-value=0.025 Score=75.28 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcc-cccccccccccCCCCCCC
Q 001669 860 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKE-VEEELKLREQAVAITLARSASG-NLHNSLEHFADDTSGPPS 931 (1034)
Q Consensus 860 ql~e~~~~l~e~~~~~~el~~~~~~le~e~~e-l~~~l~~~e~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 931 (1034)
.+..+..+..++......+...+..+...+.+ +..-...-....+.+.+....+ ++.+.+.+.+|..++.+.
T Consensus 978 r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Gie 1051 (1163)
T COG1196 978 RYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIE 1051 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcE
Confidence 34444444444444444444445444444433 4445555555566666666553 777777776665444333
No 51
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.36 E-value=0.01 Score=79.54 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001669 502 KELNELNRRLEEKESEMKLV 521 (1034)
Q Consensus 502 ~el~eL~~~L~~kE~el~~l 521 (1034)
..+.++..++..++..+..+
T Consensus 184 ~~l~el~~~~~~L~~q~~~l 203 (1164)
T TIGR02169 184 ENIERLDLIIDEKRQQLERL 203 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444433
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.36 E-value=0.038 Score=73.72 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 676 LVLQRKTEEAAMATKRLKELLESRK 700 (1034)
Q Consensus 676 ~vlkrk~eE~~a~~k~Lke~le~~k 700 (1034)
.-++++..++.+.+..|...|...+
T Consensus 514 ~~~~~~~~~~~~~~~~l~~~L~p~~ 538 (1201)
T PF12128_consen 514 RQARRELEELRAQIAELQRQLDPQK 538 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3366677777777777777776544
No 53
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.34 E-value=0.015 Score=71.31 Aligned_cols=180 Identities=19% Similarity=0.221 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 576 HAHKLKSLEAQILDLKKKQEN-QVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLR 654 (1034)
Q Consensus 576 ~e~kl~eLe~ql~dL~~k~~~-~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk 654 (1034)
|-.++.+|+..-..|....+. -.+|.+++++.|- ..|+.+|-+.+++-.. |+.+..-.|..-.++.-|...|.
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrarse~--~tleseiiqlkqkl~d----m~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG--ATLESEIIQLKQKLDD----MRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHH
Confidence 555666666665544422222 2244444444433 4555556555555443 44444445555555666666666
Q ss_pred HHhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----ccccccccCCcccccccHHHHHHH
Q 001669 655 KEGRRNEYERHKLQALNQR---QKLVLQRKTEEAAMATKRLKELLESRKSSA----RENSAVTNGNLTNGQSNEKSFQRW 727 (1034)
Q Consensus 655 ~e~rk~e~el~~Lq~~~e~---q~~vlkrk~eE~~a~~k~Lke~le~~k~~~----r~~~~~~~~~~~~~~~~~~~~k~w 727 (1034)
.+.+.+...|.-++.-++. ...-++...+++.+ -+-++-+++.++... ++.+ .-....++...-++..+-
T Consensus 336 ~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqss--s~Ee~~SK~leleke~Kn 412 (1195)
T KOG4643|consen 336 VQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSS--SYEELISKHLELEKEHKN 412 (1195)
T ss_pred HHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhHh
Confidence 6666666666655553332 22346666666665 344555555444221 1110 000000111112233344
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 728 LDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQ 764 (1034)
Q Consensus 728 l~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~~ 764 (1034)
|.-+.|++. ++.+....+..+.+.-+.+..|+++|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666 4666666677777777777777776643
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.33 E-value=0.0064 Score=68.88 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 001669 625 KVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSAR 704 (1034)
Q Consensus 625 k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r 704 (1034)
........++++...+.....+..++..|+.....++..+..++..+..+...++..+..+.+.+..++..
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~--------- 277 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREE--------- 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH---------
Confidence 34444677778888888888888888888888888888888887777777666666666665444444433
Q ss_pred cccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 705 ENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQV 765 (1034)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~~ 765 (1034)
+......+..+++..-.|..|+..-++=
T Consensus 278 ---------------------------------~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 278 ---------------------------------MARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444456777777777888887765543
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.32 E-value=0.028 Score=70.56 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 850 MFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQS 885 (1034)
Q Consensus 850 l~~~~~~~r~ql~e~~~~l~e~~~~~~el~~~~~~l 885 (1034)
....+..+|+.+..+...+.-+..-++.+.......
T Consensus 905 t~~~~g~hRqe~~~k~~t~ac~~e~~~~l~q~~~i~ 940 (1317)
T KOG0612|consen 905 TKDVLGLHRQELTCKDCTLACLEETNRTLTQKCKLL 940 (1317)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcCCc
Confidence 345666777777777777777766666665544433
No 56
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.31 E-value=0.0073 Score=72.83 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001669 678 LQRKTEEAAMATKRLKELLE 697 (1034)
Q Consensus 678 lkrk~eE~~a~~k~Lke~le 697 (1034)
++.+++|+..-..-||.+.+
T Consensus 337 lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.31 E-value=0.0036 Score=73.72 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 386 RQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSR 435 (1034)
Q Consensus 386 r~ql~~L~~eL~~~~~~~~~~~~~~L~e~i~~Le~en~~L~~el~~~~e~ 435 (1034)
+++|..|++.|.. +-+++..|+++|..|..++..++..
T Consensus 41 K~El~~LNDRLA~------------YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 41 KKELQELNDRLAV------------YIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777743 4578888999999999988887764
No 58
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.27 E-value=0.035 Score=69.13 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001669 602 KQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE 663 (1034)
Q Consensus 602 k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~e 663 (1034)
.+...+++.+...+--+..+...+....+...++++.++.....+.-++..|+.++......
T Consensus 433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~ 494 (775)
T PF10174_consen 433 EALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQ 494 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33455555555555555555555544444555555555554444444444444444444433
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.24 E-value=0.067 Score=71.41 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 795 ARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQ 874 (1034)
Q Consensus 795 ~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~~ 874 (1034)
..|..|++.+..+.+++.........+..=. .-....|..+..+.+.+-.+......+.. ++.+.+.++......
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~~~ 845 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRAEVIEYE--DWLQEEWDKVDELREEKPELEEQLRDLEQ---ELQELEQELNQLQKE 845 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHhhhhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4556666666555555544444333332100 01145677777777777766665544433 333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 875 LKELVGLLRQSEVRRKEVEEELKLREQAVA 904 (1034)
Q Consensus 875 ~~el~~~~~~le~e~~el~~~l~~~e~~~~ 904 (1034)
+. ....+++..++.+...+...++.+.
T Consensus 846 ~~---~~~~~le~~~~~~~~~~~~~~~~l~ 872 (1201)
T PF12128_consen 846 VK---QRRKELEEELKALEEQLEQLEEQLR 872 (1201)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2344444444444444444444333
No 60
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.21 E-value=0.029 Score=66.13 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 575 VHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQK-----VQLQHRIKQEAEQFRQWKASREKE 649 (1034)
Q Consensus 575 ~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k-----~~l~rkl~~E~~~~r~~k~~~eke 649 (1034)
++-..+.+++.++.+++.++.....+..--++.+......-.++..+.... .+-++-+..+.....+....+++.
T Consensus 125 ~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~k 204 (629)
T KOG0963|consen 125 ELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKK 204 (629)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777666655555444444433322222111111111 122245555556666666667777
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 001669 650 LLQLRKEGRRNEYERHKLQALNQRQK-------LVLQRKTEEAAMATKRLKELL 696 (1034)
Q Consensus 650 ~~qLk~e~rk~e~el~~Lq~~~e~q~-------~vlkrk~eE~~a~~k~Lke~l 696 (1034)
+..|.........++-.+...++.+- ++.-...+.++..+..|..+.
T Consensus 205 i~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~ 258 (629)
T KOG0963|consen 205 ISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREV 258 (629)
T ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777655333 334444444444444444333
No 61
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.20 E-value=0.031 Score=65.77 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=52.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001669 602 KQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRK 681 (1034)
Q Consensus 602 k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk 681 (1034)
..-..++.+...+++.....+. +|++.-+-.-+..|+....+--.+..|+..+++.+.....-+..+..+..-|+|.
T Consensus 544 ~~~~~le~~~~a~qat~d~a~~---Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 544 ALAAALEAQALAEQATNDEARS---DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRR 620 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh---hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333 4443333334455555555666677777777777777666666666666667776
Q ss_pred HHHHHHHHHHHHHHH
Q 001669 682 TEEAAMATKRLKELL 696 (1034)
Q Consensus 682 ~eE~~a~~k~Lke~l 696 (1034)
.+++......|-..+
T Consensus 621 lqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 621 LQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHhhc
Confidence 666665555554433
No 62
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.19 E-value=0.038 Score=73.59 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=20.9
Q ss_pred HhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 68 ~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..+.|++-.|..|+++.| ||.||||+-.+
T Consensus 13 SF~~~~~i~f~~~~t~Iv---GPNGSGKSNI~ 41 (1163)
T COG1196 13 SFADPTEINFSPGFTAIV---GPNGSGKSNIV 41 (1163)
T ss_pred cCCCCeeeecCCCCeEEE---CCCCCchHHHH
Confidence 334455666777888865 99999997655
No 63
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.17 E-value=0.054 Score=67.45 Aligned_cols=273 Identities=18% Similarity=0.193 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001669 591 KKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAL 670 (1034)
Q Consensus 591 ~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~ 670 (1034)
..+...+..+.+.-..++..+..|...+.....-+..+++.+...-......|. .+-+++-++.+...|+..++.+
T Consensus 234 e~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~----k~d~~~~eL~rk~~E~~~~qt~ 309 (775)
T PF10174_consen 234 EEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKS----KMDRLKLELSRKKSELEALQTR 309 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544455566655555544444333333 3566677777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHH---HHHHHHHH-HHHHHHHHHH
Q 001669 671 NQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWL---DHELEVMV-NVHEVRFDYE 746 (1034)
Q Consensus 671 ~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl---~~ElE~~~-~l~e~~~~~~ 746 (1034)
++.-... ..+....+.-|++.+.+.. .....++..+ ..++|... .+......+.
T Consensus 310 l~~~~~~----~~d~r~hi~~lkesl~~ke------------------~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~ 367 (775)
T PF10174_consen 310 LETLEEQ----DSDMRQHIEVLKESLRAKE------------------QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIE 367 (775)
T ss_pred HHHHHhh----HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6632211 1112223333334333221 0001111111 13333333 2444455566
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcCCCCCCccccchhhhcCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 001669 747 KQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERDR 826 (1034)
Q Consensus 747 ~~~e~r~~l~~EL~~L~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~ 826 (1034)
.+.+....+..|+..|+..++.... .+ ..+...|+.|+..+...+++ +..+..+..
T Consensus 368 ~~qeE~~~~~~Ei~~l~d~~d~~e~---------------ki--~~Lq~kie~Lee~l~ekd~q-------l~~~k~Rl~ 423 (775)
T PF10174_consen 368 KLQEEKSRLQGEIEDLRDMLDKKER---------------KI--NVLQKKIENLEEQLREKDRQ-------LDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HH--HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHh
Confidence 6666666666666666543332110 00 12234444444444333333 333333221
Q ss_pred hhccccc-hhhcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 827 LFTNRGR-WNQLRSMADAKNLLQYMFNSLADARCQLW-EKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVA 904 (1034)
Q Consensus 827 ~~~~~~~-~~~irsl~eak~~l~~l~~~~~~~r~ql~-e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~ 904 (1034)
.-..... =..+.+|+++......+.+.+...+.... +...++...+..+.++...+..++.+..+..-++....+.++
T Consensus 424 ~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s 503 (775)
T PF10174_consen 424 SQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEAS 503 (775)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 0000000 01224455555544444444333322211 333445555555556555666666665555555555556655
Q ss_pred HHHHhhhcc
Q 001669 905 ITLARSASG 913 (1034)
Q Consensus 905 ~l~~~~~~~ 913 (1034)
.|..+..+.
T Consensus 504 ~l~s~~~K~ 512 (775)
T PF10174_consen 504 KLASSQEKK 512 (775)
T ss_pred HHhhccchh
Confidence 555554443
No 64
>PRK01156 chromosome segregation protein; Provisional
Probab=98.15 E-value=0.082 Score=68.84 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.1
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4456899999999876
No 65
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.10 E-value=0.036 Score=62.82 Aligned_cols=127 Identities=17% Similarity=0.253 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001669 532 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAA 611 (1034)
Q Consensus 532 ~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~ 611 (1034)
.|-.+++.|+.+...|+.++..+.. ........+...|+..+.++..+|.++.... .+++-.+
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~~~~~-------~~~~~~~~~~~~ye~el~~lr~~id~~~~ek----------a~l~~e~ 77 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIEELRE-------KKGEEVSRIKEMYEEELRELRRQIDDLSKEK----------ARLELEI 77 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHCHHHHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHh-------cccccCcccccchhhHHHHhHHhhhhHHHHh----------hHHhhhh
Confidence 4557777777777777766666432 2233345677778888888888866655332 3333344
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001669 612 KRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK 675 (1034)
Q Consensus 612 ~~Le~ei~~~K~~k~~l~---rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~ 675 (1034)
..+..++...+.+..... ..++.++..++............|+.+...+..++.-+...|+.+.
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi 144 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEI 144 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 444444444333333222 3344444444444433333344444444444444444444444443
No 66
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.05 E-value=0.073 Score=64.65 Aligned_cols=64 Identities=27% Similarity=0.257 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 687 MATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQV 765 (1034)
Q Consensus 687 a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~~~ 765 (1034)
..|.|||+.|-+-| ..-+.++....=+..|+|... .+.+..+..+.+...-..++..+..|+.+
T Consensus 375 qqN~rLKdalVrLR---------------DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 375 QQNARLKDALVRLR---------------DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHHHHH---------------hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888777655 333344444555556666665 35555555555555555555555555443
No 67
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.043 Score=65.42 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 647 EKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLES 698 (1034)
Q Consensus 647 eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~ 698 (1034)
..++..+.++......+|.+|++++...++.|.+-+-|-+-.+.+|+....+
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a 522 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSA 522 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 3455666666677777788888877777777777777766666666554443
No 68
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.99 E-value=1.8e-07 Score=112.99 Aligned_cols=254 Identities=23% Similarity=0.272 Sum_probs=152.5
Q ss_pred CCCcceEEEEEeCCCCCccc--cc-------CCCceEEEeCCC-CceeecCceeeeceeeCCCCCChHHHHHHhhhhhHH
Q 001669 6 GEDCCVKVAVHVRPLIGDER--AQ-------GCKDCVAVVPGK-PQVQIGTHSFTFDHVYGSTGSPSSAMFDECIAPLVD 75 (1034)
Q Consensus 6 ~~~~~v~V~vRiRP~~~~E~--~~-------~~~~~v~~~~~~-~~v~~~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~ 75 (1034)
++.+.++|+|+|+|...... .. ....-..+..+. ..+......|.||.+|.+... ...++.. ...+++
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~-~~~~~~ 379 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFRE-QSQLSQ 379 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHHH-HHhhhh
Confidence 56679999999999884421 10 000000011111 122333467999999986643 4555543 566677
Q ss_pred HhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhccc-CccEEEEEeeeeechhhhhhcCCCCC
Q 001669 76 GLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD-QTEFQLHVSFIEILKEEVRDLLDPPC 154 (1034)
Q Consensus 76 ~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~ 154 (1034)
.-+.| +++||++++|+++|| .....++.+-++...|..+..... ...+...+-+.++|-....++.....
T Consensus 380 ~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 450 (568)
T COG5059 380 SSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEEL 450 (568)
T ss_pred hhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777 899999999999999 344566777777888887766433 33455555666666333333332211
Q ss_pred CCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEE
Q 001669 155 LNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 234 (1034)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~ 234 (1034)
.. ........ -.++.+. ..-++.. .....+. .....+...+...++..|..++++|.+|...
T Consensus 451 ~~-~~~~~~~~----------~~~~~~~-----~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 512 (568)
T COG5059 451 SK-KKTKIHKL----------NKLRHDL-----SSLLSSI-PEETSDR-VESEKASKLRSSASTKLNLRSSRSHSKFRDH 512 (568)
T ss_pred CC-hHHHHHHH----------HHHHHHH-----HHhhhhc-chhhhhh-hhhhhhccchhhcccchhhhhcccchhhhhc
Confidence 00 00000000 0000000 0000000 0111111 1112567788899999999999999999887
Q ss_pred EEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCccccccCCchhhhhhhHHHHhhhHHhHHHHHHhh
Q 001669 235 LEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINRGLLALGNVISALG 306 (1034)
Q Consensus 235 v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~~~IN~SL~aL~~vi~aL~ 306 (1034)
........ . ..+ ++.|||||+||. .+.+-|.++++...+|++|..++.+|.++.
T Consensus 513 ~~~~~~~~--------------~-~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 513 LNGSNSST--------------K-ELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ccchhhhh--------------H-HHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 64321110 0 111 799999999999 889999999999999999999999998864
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.94 E-value=0.041 Score=65.10 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001669 630 HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK 675 (1034)
Q Consensus 630 rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~ 675 (1034)
..++.+...++.+...++-++..|+++..++..++..+..+++++-
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4556666777777777788888888888888888888877777665
No 70
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.13 Score=63.40 Aligned_cols=228 Identities=16% Similarity=0.252 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH
Q 001669 497 QNSMDKELNELNRRLEEKESEMKLVGGS-DTAALK-----QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQ 570 (1034)
Q Consensus 497 q~~l~~el~eL~~~L~~kE~el~~l~~~-~~~~lk-----~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~ 570 (1034)
..++...+..++..|..+|++...+... ++.-.+ .-|++.+.+.-.++..++..+.....+-.+. ....+++.
T Consensus 186 ~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~-~~~~~~~~ 264 (1200)
T KOG0964|consen 186 REKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQY-IDALDKVE 264 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhH-HHHHHHHH
Confidence 3456666777777777777655554421 111112 2355666666666666655554432221111 00011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 571 KLQDVHAHKLKSLEAQILDLKK----KQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASR 646 (1034)
Q Consensus 571 kl~~~~e~kl~eLe~ql~dL~~----k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~ 646 (1034)
.-..++...+.+|+..+.-|+. ......++.+.+.+++-+++.|+.+|..-++++.. .
T Consensus 265 d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~------------------~ 326 (1200)
T KOG0964|consen 265 DESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNL------------------A 326 (1200)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhh------------------H
Confidence 1122233344455544443332 11222344444555555566666555555555543 3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHH
Q 001669 647 EKELLQLRKEGRRNEYERHKLQALNQRQK---LVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKS 723 (1034)
Q Consensus 647 eke~~qLk~e~rk~e~el~~Lq~~~e~q~---~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~ 723 (1034)
...+..++.+....+.+|.+..-++.... ..++..+..+ ..+.++.+..+- .. +.-.+.+.
T Consensus 327 l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l---~~~~~~l~~Kqg------------r~-sqFssk~e 390 (1200)
T KOG0964|consen 327 LHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKL---EQKQRDLLAKQG------------RY-SQFSSKEE 390 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHH---HHHHHHHHHhhc------------cc-cccCcHHH
Confidence 44444444444445555555444444322 2233222222 223333333221 11 22344567
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001669 724 FQRWLDHELEVMVN-VHEVRFDYEKQSQVRAALAEEL 759 (1034)
Q Consensus 724 ~k~wl~~ElE~~~~-l~e~~~~~~~~~e~r~~l~~EL 759 (1034)
+-.|+..|++.+.. +.+.......++.++..+..++
T Consensus 391 RDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l 427 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESEL 427 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 88999999988775 4444444444444444444443
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.91 E-value=0.11 Score=62.16 Aligned_cols=35 Identities=11% Similarity=0.305 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 001669 410 VLKERIAWLEAANEDLCRELHEYRSRCTDVEQRET 444 (1034)
Q Consensus 410 ~L~e~i~~Le~en~~L~~el~~~~e~~~~l~~~~~ 444 (1034)
.+++-...+++....+..++..++..|..++....
T Consensus 89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq 123 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ 123 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666655444
No 72
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.91 E-value=0.1 Score=61.57 Aligned_cols=37 Identities=30% Similarity=0.571 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 525 DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 561 (1034)
Q Consensus 525 ~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 561 (1034)
....++..|-++|.+|+..+..+-.|+|.|..+++++
T Consensus 399 ~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ksl 435 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLEKKVQALTKERDALRREQKSL 435 (961)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456888999999999999999999999999999887
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.18 Score=62.48 Aligned_cols=330 Identities=16% Similarity=0.169 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001669 535 KKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRL 614 (1034)
Q Consensus 535 ~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~L 614 (1034)
+++.+.+.+++..+.+++.+..+++.++. ...+...++.+++-++-+|.-- .=+..+....++......+.+.+..+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~-~~~kf~~l~~ql~l~~~~l~l~--~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEA-QSQKFRDLKQQLELKLHELALL--EKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 45666778888888888888888887732 2233444444333222222111 11223344455555666777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 001669 615 QDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLV---LQRKTEEAAMATKR 691 (1034)
Q Consensus 615 e~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~v---lkrk~eE~~a~~k~ 691 (1034)
+.+|.......-+.+.++..=-....+|+..+++.+.+|.++.......+.+-....+...+. |+-..+++.-.++-
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~ 833 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISS 833 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777776666666666555566777888888888888877766666555555444433333 33333333322222
Q ss_pred HHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 001669 692 LKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFAS 770 (1034)
Q Consensus 692 Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~ 770 (1034)
.+..+.... ..++.+. .+.++...+........+..++|...++.+-...
T Consensus 834 ~k~~l~~~~-----------------------------~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~d 884 (1174)
T KOG0933|consen 834 LKQQLEQLE-----------------------------KQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDID 884 (1174)
T ss_pred HHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 222222111 1111111 3444455555555555555555555443221111
Q ss_pred cCC--CCCCccccchhhhcCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-------hhhhccc-cchh-hccc
Q 001669 771 KGL--SPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEER-------DRLFTNR-GRWN-QLRS 839 (1034)
Q Consensus 771 ~~~--~~~~~~~~~~~~~~~~~~~~~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~-------~~~~~~~-~~~~-~irs 839 (1034)
..- -.+. ...+..+.+ ...-.+..|+.++.....+.+++...+..+..+ .+-|.+. +.++ .-.+
T Consensus 885 t~i~~~~~~---~e~~~~e~~--~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~ 959 (1174)
T KOG0933|consen 885 TEISGLLTS---QEKCLSEKS--DGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYD 959 (1174)
T ss_pred HHHhhhhhH---HHHHHHHhh--cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCC
Confidence 000 0000 000000000 000123344444444444444444444444322 1111111 1111 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 840 MADAKNLLQYMFNSLADARCQLWEKD-IEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQ 901 (1034)
Q Consensus 840 l~eak~~l~~l~~~~~~~r~ql~e~~-~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~ 901 (1034)
.-+|+..|+.|.+.....+..+.-.. .-|...+.+..++....+..+..+..+.+-.+...+
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe 1022 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDE 1022 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77888888888877666666555443 336666777777777777777766666555544433
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.83 E-value=0.01 Score=73.45 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhccccccccC
Q 001669 634 QEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVL-QRKTEEAAMATKRLKELLESRKSSARENSAVTNG 712 (1034)
Q Consensus 634 ~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vl-krk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~ 712 (1034)
+..+..|.-++++|.|+.+|+.+++.++.++..|+...+.. ..+ +.--.+..+....|..+.+
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l-r~~~~e~~~~~e~L~~aL~amqd--------------- 601 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL-RKYEKESEKDTEVLMSALSAMQD--------------- 601 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHH---------------
Confidence 44555666777788888888888888888877777655211 111 1111122222222221111
Q ss_pred CcccccccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001669 713 NLTNGQSNEKSFQRWLDHE----LEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEF 768 (1034)
Q Consensus 713 ~~~~~~~~~~~~k~wl~~E----lE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~ 768 (1034)
+...+-.-|..| ++....+.|++++++.......+...|+..|++++..
T Consensus 602 -------k~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 602 -------KNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred -------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122222 3445568999999999999999999999999987554
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.79 E-value=0.39 Score=64.59 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 001669 577 AHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ------HRIKQEAEQFRQWKASREKEL 650 (1034)
Q Consensus 577 e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~------rkl~~E~~~~r~~k~~~eke~ 650 (1034)
+.++..++.++..++.. ...+.......+..+..++..++.+.+.+.-+. ..|+..+..|.....+++.++
T Consensus 382 eeEleelEeeLeeLqeq---Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQ---LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444332 334455555666666777777777777776663 666677777776666666666
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q 001669 651 LQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 651 ~qLk~e~rk~e~el~~Lq~ 669 (1034)
..++.+....+..+..+..
T Consensus 459 ~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 459 LSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555444
No 76
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.27 Score=61.98 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.4
Q ss_pred eccCCCCcceec
Q 001669 88 YGQTGSGKTYTM 99 (1034)
Q Consensus 88 yG~tgSGKT~Tm 99 (1034)
.||.||||+-.|
T Consensus 114 vGPNGSGKSNVI 125 (1293)
T KOG0996|consen 114 VGPNGSGKSNVI 125 (1293)
T ss_pred ECCCCCCchHHH
Confidence 599999998776
No 77
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.3 Score=58.66 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=13.1
Q ss_pred CcccHhHHHHHHHHHHHh
Q 001669 108 QTGIIPLVMNVLFSKIET 125 (1034)
Q Consensus 108 ~~Glipr~~~~LF~~i~~ 125 (1034)
..||-+.++..|+...+.
T Consensus 43 qS~LP~~VLaqIWALsDl 60 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSDL 60 (1118)
T ss_pred hcCCChHHHHHHHHhhhc
Confidence 357888888888876544
No 78
>PRK01156 chromosome segregation protein; Provisional
Probab=97.62 E-value=0.54 Score=61.35 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=7.2
Q ss_pred eeeCCCCCChHHHHH
Q 001669 53 HVYGSTGSPSSAMFD 67 (1034)
Q Consensus 53 ~Vf~~~~~~q~~v~~ 67 (1034)
-++|++++--..|++
T Consensus 27 ~I~G~NGsGKSsile 41 (895)
T PRK01156 27 IITGKNGAGKSSIVD 41 (895)
T ss_pred EEECCCCCCHHHHHH
Confidence 445555554444443
No 79
>PRK11637 AmiB activator; Provisional
Probab=97.55 E-value=0.11 Score=61.61 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=17.3
Q ss_pred HhhhcCCCCcceeeecccccceeeee-ecccCcchhhhhhh
Q 001669 975 KLAALGQGGKLWRWKRSHHQWLLQFK-WKWQKPWRLSEWIR 1014 (1034)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1014 (1034)
.|+.+|.+|- ....| |+|. |+.-+|-.-..|++
T Consensus 394 ~ig~~g~~g~----~~~~~---l~fei~~~~~~vnP~~~l~ 427 (428)
T PRK11637 394 PIALVGSSGG----QGRPS---LYFEIRRQGQAVNPQPWLG 427 (428)
T ss_pred eEEeecCCCC----CCCCe---EEEEEEECCEEeChHHHhC
Confidence 4566777762 22122 4444 44445666667764
No 80
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.48 E-value=0.51 Score=57.59 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 723 SFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQV 765 (1034)
Q Consensus 723 ~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~~ 765 (1034)
.+..+..+.+|+...+..+...+.+...+-..++.|+..+..+
T Consensus 485 ~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 485 NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999998887443
No 81
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.46 E-value=0.11 Score=64.62 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001669 795 ARISSLENMLSISSNSLVAMASQLSEAEERD 825 (1034)
Q Consensus 795 ~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~ 825 (1034)
....+||.++..+..++...+.++..++.+.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777766666666666543
No 82
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.45 E-value=0.54 Score=57.08 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 531 QHFGKKIAELEDEKRTVQKERDHL 554 (1034)
Q Consensus 531 ~~~e~ki~eLe~ei~~l~~e~~~L 554 (1034)
....+++.+|..+|..+.+.++..
T Consensus 168 ~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 168 EENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888765
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.43 E-value=0.06 Score=58.39 Aligned_cols=98 Identities=18% Similarity=0.308 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001669 534 GKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKR 613 (1034)
Q Consensus 534 e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~ 613 (1034)
+.++..++..+..|+.++..+...+..++. +..+...-.+.|+.++..|..+ |+..........+-..+++..+..
T Consensus 133 EeR~e~~E~ki~eLE~el~~~~~~lk~lE~-~~~~~~~re~~~e~~i~~L~~~---lkeaE~Rae~aE~~v~~Le~~id~ 208 (237)
T PF00261_consen 133 EERAEAAESKIKELEEELKSVGNNLKSLEA-SEEKASEREDEYEEKIRDLEEK---LKEAENRAEFAERRVKKLEKEIDR 208 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666555555555421 1233333345677777777777 444444444556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001669 614 LQDEIQFIKAQKVQLQHRIKQE 635 (1034)
Q Consensus 614 Le~ei~~~K~~k~~l~rkl~~E 635 (1034)
|+.+|...|..+..+.+.|...
T Consensus 209 le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 209 LEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877666555443
No 84
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.43 E-value=0.51 Score=56.38 Aligned_cols=191 Identities=22% Similarity=0.293 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcCCChhhhHHHH
Q 001669 501 DKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDE-------KRTVQKERDHLLTEIENLASNSDGQTQKLQ 573 (1034)
Q Consensus 501 ~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~e-------i~~l~~e~~~L~~el~~~~~~~~~~~~kl~ 573 (1034)
+.++..|..++..||..++.+. ..-+....++..|+.. +.....+.+.|.+++..+. .+-.......
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~-----~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K-~slq~~~~tq 312 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLL-----LLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIK-QSLQESESTQ 312 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3455555555566665554433 1222333444444433 3444455566666666431 1111222222
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001669 574 DVHAHKLKSLEAQILDLK-KKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKE 649 (1034)
Q Consensus 574 ~~~e~kl~eLe~ql~dL~-~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~---rkl~~E~~~~r~~k~~~eke 649 (1034)
..++..++..-..+.+|. .+...+..+.+.+..+...+..++..|..++..-.--+ .+...++....-..+....+
T Consensus 313 ~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~e 392 (786)
T PF05483_consen 313 KALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSE 392 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
Confidence 223334444444444444 34455667777777777777777777666655443333 33444454444444555555
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 001669 650 LLQLRKEGRRNEYERHKLQALNQRQK------LVLQRKTEEAAMATKRLKELLE 697 (1034)
Q Consensus 650 ~~qLk~e~rk~e~el~~Lq~~~e~q~------~vlkrk~eE~~a~~k~Lke~le 697 (1034)
+....+.....+.++..|..-+..-+ ..+.+=.+++.+...+|...|.
T Consensus 393 leEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq 446 (786)
T PF05483_consen 393 LEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQ 446 (786)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665555333 3344445555555555555544
No 85
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.74 Score=57.30 Aligned_cols=106 Identities=26% Similarity=0.248 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 573 QDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQ 652 (1034)
Q Consensus 573 ~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~q 652 (1034)
....+.++++|+++|..+.++-++ -.+.-.+.+.....|..+++++++.... .+.++.+.......+..++..
T Consensus 782 ~~~re~rlkdl~keik~~k~~~e~---~~~~~ek~~~e~e~l~lE~e~l~~e~~~----~k~~l~~~~~~~~~l~~e~~~ 854 (1174)
T KOG0933|consen 782 KANRERRLKDLEKEIKTAKQRAEE---SSKELEKRENEYERLQLEHEELEKEISS----LKQQLEQLEKQISSLKSELGN 854 (1174)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888886655544333 2333334455566666666666655543 344444455555566667777
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 653 LRKEGRRNEYERHKLQALNQRQKLVLQRKTEEA 685 (1034)
Q Consensus 653 Lk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~ 685 (1034)
|.......+.+..+++..+..+++.+.-...++
T Consensus 855 l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 855 LEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777777777777777776666665555444444
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.37 E-value=0.71 Score=56.76 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 871 MKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAI 905 (1034)
Q Consensus 871 ~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~ 905 (1034)
..+.+.+....+..+..+..+|.......+..+..
T Consensus 474 i~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 474 VNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455554444444444444
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.35 E-value=0.18 Score=61.96 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=12.1
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
..+-+|++|+|||..+
T Consensus 29 ~~~i~G~NG~GKStll 44 (562)
T PHA02562 29 KTLITGKNGAGKSTML 44 (562)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4456799999998765
No 88
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.33 E-value=0.92 Score=57.35 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=14.2
Q ss_pred CCceeEEEeccCCCCcceec
Q 001669 80 GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 80 G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|-+.. |..|+.||||+-.|
T Consensus 61 g~~vN-fI~G~NGSGKSAIl 79 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAIL 79 (1074)
T ss_pred CCCce-EeecCCCCcHHHHH
Confidence 44444 77899999998665
No 89
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.32 E-value=0.39 Score=52.85 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 644 ASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESR 699 (1034)
Q Consensus 644 ~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~ 699 (1034)
..+...+..|+.+..++..++...+.++......|-...+++...|.+|+..|..+
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E 280 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQRE 280 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777776666667777777777777777766643
No 90
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=1.2 Score=56.43 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001669 630 HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQ 674 (1034)
Q Consensus 630 rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q 674 (1034)
..++.++........+.++++..++++.+.....+..+..+.+.-
T Consensus 545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666655555555555433
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.14 E-value=1.1 Score=54.75 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001669 604 KQKSDEAAKRLQDEIQFIKAQKVQ--LQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQ 679 (1034)
Q Consensus 604 k~k~ee~~~~Le~ei~~~K~~k~~--l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlk 679 (1034)
.+.-++....|..+++.+.+.... -.++|-+=....++++.+..| .-.+.+..+.+|+.+..++++.=++.-
T Consensus 463 ~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~K----Il~DTr~lQkeiN~l~gkL~RtF~v~d 536 (594)
T PF05667_consen 463 IRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEK----ILSDTRELQKEINSLTGKLDRTFTVTD 536 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333444445555555554443222 225555555555555544433 333455666667777776666655533
No 92
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=1.3 Score=55.10 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 737 NVHEVRFDYEKQSQVRAALAEELAVLKQ 764 (1034)
Q Consensus 737 ~l~e~~~~~~~~~e~r~~l~~EL~~L~~ 764 (1034)
.+.+..-.++.+.+.-..+...|..|+.
T Consensus 343 EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 343 ELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3555555566666655555555655544
No 93
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.09 E-value=0.0031 Score=79.59 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001669 795 ARISSLENMLSISSNSLVAMASQLSEAEER 824 (1034)
Q Consensus 795 ~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~ 824 (1034)
+.+..|+.++..++.++..|..++..++.+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544
No 94
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.96 E-value=0.88 Score=50.17 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 001669 571 KLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQE----AEQFRQWKASR 646 (1034)
Q Consensus 571 kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E----~~~~r~~k~~~ 646 (1034)
-+...+-++|+.|.++..+|-. +..+..|--+..|...|.++..-|+++...|..+ ..+++.....+
T Consensus 77 ~isN~LlKkl~~l~keKe~L~~---------~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~L 147 (310)
T PF09755_consen 77 FISNTLLKKLQQLKKEKETLAL---------KYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERL 147 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444555555555444432 2222334445677777888888888888777654 34556666677
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 001669 647 EKELLQLRKEGRRNEYERHKLQALNQRQK----LVLQRKTEEAAMATKRLKELLES 698 (1034)
Q Consensus 647 eke~~qLk~e~rk~e~el~~Lq~~~e~q~----~vlkrk~eE~~a~~k~Lke~le~ 698 (1034)
+++...+...+.++..+...|+..++.++ +.|.+++..+.+..+.|...|+.
T Consensus 148 e~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 148 EKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77777777777788888888888888776 55999999999999999999884
No 95
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.90 E-value=0.83 Score=52.28 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001669 530 KQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDE 609 (1034)
Q Consensus 530 k~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee 609 (1034)
|.-.++.++.|+.-....+..+.+-..+.+.+ .-+.+|++..|..=-. +-+.+++.+ ++...+.-..+.
T Consensus 385 Knd~~k~lqnLqe~la~tqk~LqEsr~eKetL----qlelkK~k~nyv~LQE---ry~~eiQqK----nksvsqclEmdk 453 (527)
T PF15066_consen 385 KNDIEKTLQNLQEALANTQKHLQESRNEKETL----QLELKKIKANYVHLQE---RYMTEIQQK----NKSVSQCLEMDK 453 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHhhhHHHHHH---HHHHHHHHh----hhHHHHHHHHHH
Confidence 34444555555555555555544444444433 2333344433321100 111123333 233444555677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001669 610 AAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE 663 (1034)
Q Consensus 610 ~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~e 663 (1034)
.+..-+.+|+++++-|..+.+.....++.+++.+..+|.+...|..+..+.+.+
T Consensus 454 ~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 454 TLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777888889999999999999999999999999999999999998888777655
No 96
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=1.8 Score=52.95 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 530 KQHFGKKIAELEDEKRTVQKERDHLLTEIENL 561 (1034)
Q Consensus 530 k~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 561 (1034)
...++.++.....++..+.++.+-|..++...
T Consensus 687 ~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 687 NEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44455555555555555666665555555543
No 97
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.89 E-value=1.7 Score=52.56 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=19.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 599 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHR 631 (1034)
Q Consensus 599 ~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rk 631 (1034)
.|.+.+.+.++-++.++.+++.+|+.+......
T Consensus 281 ~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gd 313 (1265)
T KOG0976|consen 281 VLGDELSQKEELVKELQEELDTLKQTRTRADGD 313 (1265)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455555566666666666666666666655433
No 98
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=1.4 Score=51.23 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001669 533 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDV---HAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDE 609 (1034)
Q Consensus 533 ~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~---~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee 609 (1034)
+.+....+-.-...++.++-+|..+++.. .....++-.+ ++++--.|.++++.|+.-+-+..-+.-...++++
T Consensus 133 l~~~~sd~~e~~~~~E~qR~rlr~elKe~----KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleE 208 (772)
T KOG0999|consen 133 LEKVHSDLKESNAAVEDQRRRLRDELKEY----KFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEE 208 (772)
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 33444444444556666666666666654 2333333333 2344455666766776665555556666678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 001669 610 AAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQW---KASREKELLQ 652 (1034)
Q Consensus 610 ~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~---k~~~eke~~q 652 (1034)
.+.-|+..++..-.-|.=..++|++.++.++.. +-.+-||+.+
T Consensus 209 e~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 209 ETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888888888888888889999877765543 3334444433
No 99
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.86 E-value=1.2 Score=54.69 Aligned_cols=20 Identities=5% Similarity=0.262 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001669 537 IAELEDEKRTVQKERDHLLT 556 (1034)
Q Consensus 537 i~eLe~ei~~l~~e~~~L~~ 556 (1034)
+..++.++..++.+++.+..
T Consensus 257 L~~l~~~~~~~~~~l~~~~~ 276 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQK 276 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 100
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0012 Score=75.97 Aligned_cols=95 Identities=25% Similarity=0.442 Sum_probs=67.6
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHh----HHHHHHHHH
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIP----LVMNVLFSK 122 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glip----r~~~~LF~~ 122 (1034)
..|..-.-|.|.+++. .++..+|+++-.|...-++ .|.|||||||||-.-......|-||- -....||..
T Consensus 3 ~~F~l~s~f~PaGDQP-----~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQP-----EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcH-----HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 3577777899988754 3467889888888876655 59999999999932111112233321 345678888
Q ss_pred HHhcccCccEEEEEeeeeechhhhh
Q 001669 123 IETLKDQTEFQLHVSFIEILKEEVR 147 (1034)
Q Consensus 123 i~~~~~~~~~~v~vS~~EIy~e~v~ 147 (1034)
.........+...||||..|+-+.|
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHhCcCcceEEEeeeccccCcccc
Confidence 8777777889999999999986655
No 101
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.78 E-value=3 Score=54.54 Aligned_cols=30 Identities=10% Similarity=0.254 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 671 NQRQKLVLQRKTEEAAMATKRLKELLESRK 700 (1034)
Q Consensus 671 ~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 700 (1034)
...+...++.++..+.+.+..|.+.+..+|
T Consensus 206 ~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 206 ARLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666665544
No 102
>PRK11281 hypothetical protein; Provisional
Probab=96.69 E-value=2.9 Score=54.87 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 667 LQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 700 (1034)
Q Consensus 667 Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 700 (1034)
++.....+...++.++..+...+..|.+.+-.+|
T Consensus 221 l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666665443
No 103
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.69 E-value=1.3 Score=48.12 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001669 382 MLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCT 437 (1034)
Q Consensus 382 i~~Lr~ql~~L~~eL~~~~~~~~~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~ 437 (1034)
|..++.++...+..+.. ....+..........+.+...|.+.+..+.+.+.
T Consensus 3 ~~~l~~eld~~~~~~~~-----~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le 53 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEE-----AEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELE 53 (237)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554432 2223333344444444444444444444444333
No 104
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.64 E-value=2.8 Score=51.54 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHH
Q 001669 792 ARMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKN 845 (1034)
Q Consensus 792 ~~~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~ 845 (1034)
.+..-.+.|+.....+=.++++|...+..++-.. ..+|....+|++--.
T Consensus 411 aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~-----~ql~~et~ti~eyi~ 459 (617)
T PF15070_consen 411 ALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRF-----IQLSGETDTIGEYIT 459 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHhccCccchhhhhc
Confidence 3344556666666666666667766666665543 233444555555443
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.58 E-value=2.1 Score=49.35 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 620 FIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 620 ~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
.|-..+.+.+..+...+......++..+.+..+|+........+..+|.
T Consensus 154 ~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~ 202 (420)
T COG4942 154 ALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLA 202 (420)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444433333333333333
No 106
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.49 E-value=4.1 Score=51.56 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 880 GLLRQSEVRRKEVEEELKLREQAVAITLARS 910 (1034)
Q Consensus 880 ~~~~~le~e~~el~~~l~~~e~~~~~l~~~~ 910 (1034)
..+..|+-....-++.|+.++..++-|.+..
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 3445555555555566666666655555444
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.48 E-value=0.72 Score=49.42 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 578 HKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEG 657 (1034)
Q Consensus 578 ~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~ 657 (1034)
..+..++.+|.+++.+........ -..+.+.....|..+++..+...+.| +.++.....-...+++++..++...
T Consensus 59 ~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~l----e~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 59 NQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSL----EDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333322222 23444555677777777777766544 4445555555666777777777778
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 658 RRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESR 699 (1034)
Q Consensus 658 rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~ 699 (1034)
.+.+..+.......+..-..+..+...+......|++.+..+
T Consensus 134 ~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~e 175 (239)
T COG1579 134 ERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE 175 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 788888888877777777777777777777777777766543
No 108
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.38 E-value=0.00086 Score=84.52 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-----cccccccCC
Q 001669 860 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHN-----SLEHFADDT 926 (1034)
Q Consensus 860 ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~-----~~~~~~~~~ 926 (1034)
.+......+.+++..+.+|.....++..+..++...+......+..|.+...-..-++ .++.|+.+.
T Consensus 358 k~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 358 KLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333344444444444444443334444444444444444444444444443332222 456665543
No 109
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=3.4 Score=48.95 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 615 QDEIQFIKAQKVQLQHRIK------QEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMA 688 (1034)
Q Consensus 615 e~ei~~~K~~k~~l~rkl~------~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~ 688 (1034)
+.+++.+++..-.|..+++ ++.++....+.++.+++..+..+..+...++-.+..+++..---++.+.......
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443 4566666667777778888888888888888888777777777777788888777
Q ss_pred HHHHHHH
Q 001669 689 TKRLKEL 695 (1034)
Q Consensus 689 ~k~Lke~ 695 (1034)
+.+|+-.
T Consensus 387 ~~~i~l~ 393 (581)
T KOG0995|consen 387 IRRIKLG 393 (581)
T ss_pred HHHHHHH
Confidence 7777766
No 110
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=3.6 Score=48.79 Aligned_cols=183 Identities=21% Similarity=0.176 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc---CCC---hhhhHHH
Q 001669 500 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTE-IENLA---SNS---DGQTQKL 572 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~e-l~~~~---~~~---~~~~~kl 572 (1034)
|..|..+|.+.|.....++..+.+ ..-.++-.++....+++.....+..-+.++..- ..... ... ....-.+
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~l~k-~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~ 415 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDRLSK-EVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDL 415 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccc
Confidence 334444444444444444333331 111223344555555666655555555554433 11111 111 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 573 QDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQ 652 (1034)
Q Consensus 573 ~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~q 652 (1034)
+....-.+.++-.+|. +....-...+..+++.+..+...|++.++.-..+..++..-...+..-+...+
T Consensus 416 k~~V~~~l~el~~ei~------~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~e----- 484 (581)
T KOG0995|consen 416 KSYVKPLLKELLDEIS------EELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAE----- 484 (581)
T ss_pred hhHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3333334444444433 22222222344455556666666665555555555555544444444444443
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 653 LRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELL 696 (1034)
Q Consensus 653 Lk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~l 696 (1034)
.+..+...++.+|...+....-++...+.++....+...-.+
T Consensus 485 --ee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el 526 (581)
T KOG0995|consen 485 --EEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELEL 526 (581)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555566666666654444444333
No 111
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.29 E-value=2.6 Score=47.60 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=65.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-
Q 001669 597 QVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQK- 675 (1034)
Q Consensus 597 ~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~- 675 (1034)
.++|.+-.++++.....-...++++++..+++...+++|-+-. +..|=+...+++.+-.-|+.++++..
T Consensus 160 vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEal----------vN~LwKrmdkLe~ekr~Lq~KlDqpvs 229 (552)
T KOG2129|consen 160 VNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEAL----------VNSLWKRMDKLEQEKRYLQKKLDQPVS 229 (552)
T ss_pred HHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4556666677777776667778999999999888777664443 34455566677777777777775332
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001669 676 -------------------LVLQRKTEEAAMATKRLKELLES 698 (1034)
Q Consensus 676 -------------------~vlkrk~eE~~a~~k~Lke~le~ 698 (1034)
..+++.+.-+++.+.||+..+.+
T Consensus 230 ~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 230 TPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred CCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888888888887763
No 112
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.23 E-value=1.2 Score=50.22 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 001669 529 LKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQEN-------QVQLL 601 (1034)
Q Consensus 529 lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~-------~~~l~ 601 (1034)
..+.+-++|+.|+.+-..-+..++.|..+.-.++...+...+-+-..+=++...|+.+..-|++|.++ ...+.
T Consensus 159 ~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia 238 (552)
T KOG2129|consen 159 FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIA 238 (552)
T ss_pred HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhh
Confidence 35566677888877765555556666666666654445555555555666777777777667666544 11111
Q ss_pred HH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 602 KQ-------KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLR 654 (1034)
Q Consensus 602 k~-------k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk 654 (1034)
+. -..+---+..|+++|++++..-...++.-.+++.+++..+...+.+..+|+
T Consensus 239 ~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 239 KIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQ 298 (552)
T ss_pred cCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11 011122255667777777777777777777777777776666666655554
No 113
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.10 E-value=7.7 Score=50.74 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=12.7
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
..+-+|+||||||+-|
T Consensus 27 i~lI~G~nGsGKSSIl 42 (908)
T COG0419 27 IFLIVGPNGAGKSSIL 42 (908)
T ss_pred eEEEECCCCCcHHHHH
Confidence 3456799999998766
No 114
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.10 E-value=5.5 Score=49.07 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 604 KQKSDEAAKRLQDEIQFIKAQKVQLQH 630 (1034)
Q Consensus 604 k~k~ee~~~~Le~ei~~~K~~k~~l~r 630 (1034)
-.+++..+..|+..++.+..--..+..
T Consensus 200 l~~l~~~~~~l~~~~~~iP~l~~~~~~ 226 (569)
T PRK04778 200 LDQLEEELAALEQIMEEIPELLKELQT 226 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666655555555443
No 115
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.04 E-value=7.1 Score=49.82 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001669 795 ARISSLENMLSISSNSLVAMASQLSEAEE 823 (1034)
Q Consensus 795 ~qi~~Le~~~~~~~~~~~~l~~~l~e~e~ 823 (1034)
.-+++|...+....++|......+.++.+
T Consensus 734 ~~~~~l~~ei~~~~~eIe~~~~~~e~l~~ 762 (1074)
T KOG0250|consen 734 SKLEDLAREIKKKEKEIEEKEAPLEKLKE 762 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555665555555555555555544
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=6.2 Score=48.45 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 599 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI 632 (1034)
Q Consensus 599 ~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl 632 (1034)
+|.-+.+++++++..+.++..+++.+-..|--++
T Consensus 682 ~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 682 ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455566666666666666555555544333
No 117
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=7.7 Score=49.25 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=17.1
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccCccCCCcchhh
Q 001669 914 NLHNSLEHFADDTSGPPSPMSVPAQKQLKYTPGIANGSIRESA 956 (1034)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1034)
|....+-.+.|+.+.| |-.||--.++.+.-
T Consensus 1015 nt~g~AyL~~en~~EP-------------yl~GIky~~~pP~K 1044 (1141)
T KOG0018|consen 1015 NTEGQAYLGLENPEEP-------------YLDGIKYHCMPPGK 1044 (1141)
T ss_pred ccccceeecCCCCCcc-------------hhcCccccccCCcc
Confidence 3334445555666665 56666666666555
No 118
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.86 E-value=1.7 Score=46.45 Aligned_cols=163 Identities=22% Similarity=0.229 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 577 AHKLKSLEAQILDLKKKQE-NQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQL---QHRIKQEAEQFRQWKASREKELLQ 652 (1034)
Q Consensus 577 e~kl~eLe~ql~dL~~k~~-~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l---~rkl~~E~~~~r~~k~~~eke~~q 652 (1034)
-+++++|+.+++.|++.+. .+=+| ..|++.++.-|++.-.- .-.|+.|...+.+....+++....
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQl-----------eSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqK 85 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQL-----------ESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQK 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3478888888888875433 23233 33333333322211111 145667777788888888888888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-------ccCCcccccccHHHHH
Q 001669 653 LRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAV-------TNGNLTNGQSNEKSFQ 725 (1034)
Q Consensus 653 Lk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~-------~~~~~~~~~~~~~~~k 725 (1034)
|-.++.-++.++.-|+.+ .+-.+.+++-+...+++++.+|++-+.......+. +.......... +
T Consensus 86 lshdlq~Ke~qv~~lEgQ----l~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~----q 157 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQ----LNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPS----Q 157 (307)
T ss_pred hhHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChh----h
Confidence 888888888888777664 44566788889999999999999766553322211 11111111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 726 RWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQ 764 (1034)
Q Consensus 726 ~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~ 764 (1034)
| -.-.++++....|..-.++|+.++.|+..|..
T Consensus 158 -~-----~~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 158 -Y-----YSDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred -h-----hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 0 11134567777888999999999999998854
No 119
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.73 E-value=3.3 Score=43.60 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 611 AKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATK 690 (1034)
Q Consensus 611 ~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k 690 (1034)
+..+...-+.+|+.-.+.+.++..+-.+|...+...+..+. ..-.++..+...++.+...|+-.++.....+.
T Consensus 106 i~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~-------~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~ 178 (207)
T PF05010_consen 106 IEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE-------KANEEIAQVRSKHQAELLALQASLKKEEMKVQ 178 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555666666777777777777777664444 44556677777777777777777777777777
Q ss_pred HHHHHHHHhh
Q 001669 691 RLKELLESRK 700 (1034)
Q Consensus 691 ~Lke~le~~k 700 (1034)
.|.+.|+...
T Consensus 179 SLe~~LeQK~ 188 (207)
T PF05010_consen 179 SLEESLEQKT 188 (207)
T ss_pred HHHHHHHHHH
Confidence 7777777544
No 120
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.72 E-value=0.0027 Score=79.93 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001669 632 IKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQ 672 (1034)
Q Consensus 632 l~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e 672 (1034)
++.+++.++....+++.++........+.+.++..|+.+++
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666655444
No 121
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.69 E-value=14 Score=50.39 Aligned_cols=69 Identities=20% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 794 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEK 864 (1034)
Q Consensus 794 ~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~ 864 (1034)
.+.+++|+............+..++..+..+...+.. +.-...+..++-..|...+...-.....+...
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~--~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~ 632 (1486)
T PRK04863 564 EARLESLSESVSEARERRMALRQQLEQLQARIQRLAA--RAPAWLAAQDALARLREQSGEEFEDSQDVTEY 632 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHhhHHHHHHHHHhcchhhcCHHHHHHH
Confidence 3456666666666666666666666666665443321 11223334445445555554433333333333
No 122
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.39 E-value=7.1 Score=45.21 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=9.3
Q ss_pred CcchhHHhhhcCCCCc
Q 001669 969 GQLSMKKLAALGQGGK 984 (1034)
Q Consensus 969 ~~~~~~~~~~~~~~~~ 984 (1034)
|...+|++.+-...|-
T Consensus 317 gg~~wkG~vi~a~~Ga 332 (420)
T COG4942 317 GGLRWKGMVIGASAGA 332 (420)
T ss_pred CCccccceEEecCCCC
Confidence 4466666666555554
No 123
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.36 E-value=11 Score=47.03 Aligned_cols=144 Identities=22% Similarity=0.252 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH---H
Q 001669 500 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDV---H 576 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~---~ 576 (1034)
+...+.+|+..|.....++... .+....+.....++......++.++..|..+++.. .....++-.+ +
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~-----~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~----K~rE~rll~dysel 102 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNV-----QAENERLSQLNQELRKECEDLELERKRLREEIKEY----KFREARLLQDYSEL 102 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHH
Confidence 3444444444444444333332 23345555666667777777777777777777665 3333333333 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001669 577 AHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQF---RQWKASREKELLQ 652 (1034)
Q Consensus 577 e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~---r~~k~~~eke~~q 652 (1034)
+++.-.|.++++.|+.-+-+..-+.-..+++++.+.-|...++..-+-|--..++|.+.++.. |+++..+-||+.+
T Consensus 103 EeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 103 EEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777666666666666688888999999999998888888889999776655 4455555555555
No 124
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.32 E-value=9.1 Score=45.98 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred HHHHHhhhcccccccccccccCCCCCCCCCCcccccccccccCccCCCcchh
Q 001669 904 AITLARSASGNLHNSLEHFADDTSGPPSPMSVPAQKQLKYTPGIANGSIRES 955 (1034)
Q Consensus 904 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1034)
..+.....+.++....++..++..+ .++.+++.+...+++|-..++.+-..
T Consensus 428 ~klE~dl~~~~~~~~~~~~~~~~~~-~~~~~v~e~s~~~~~p~~~~~~~~s~ 478 (629)
T KOG0963|consen 428 AKLEQDLLKVQVSPPAEGATARREE-GSGQPVPESSIMGGGPSLPNGGVLSR 478 (629)
T ss_pred HHHHhhHhhcccCCCCCcchhhhcc-cCCcCCCcccccCCCCCccccccccc
Confidence 4444444444444444554444444 47888888888999988887776554
No 125
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.10 E-value=7.4 Score=43.75 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 633 KQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 633 ~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
++++...++.......++.++.++.+.+..++..|-
T Consensus 122 ~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~ 157 (499)
T COG4372 122 RQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 126
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.05 E-value=7.7 Score=43.64 Aligned_cols=82 Identities=28% Similarity=0.336 Sum_probs=45.1
Q ss_pred hhHHhHHHHHHhhccccCCCCccccCCCchhhhhhhhcCC-CCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcc
Q 001669 294 GLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLG-GNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPI 372 (1034)
Q Consensus 294 SL~aL~~vi~aL~~~~~~~~~~~iPyRdSkLTrlLq~sLg-gns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~ 372 (1034)
+.+.||.||..+++. |--+--|- | | .-|| -.-.|.+|++|-.+.--..-||..|=.+++--.
T Consensus 8 ~vlvLgGVIA~~gD~--------ig~kvGka-r-L-rlF~LRPkqTAvlvtvltG~liSA~tLailf~~~~~lr------ 70 (499)
T COG4372 8 FVLVLGGVIAYAGDT--------IGKKVGKA-R-L-RLFGLRPKQTAVLVTVLTGMLISAATLAILFLLNRNLR------ 70 (499)
T ss_pred HHHHHHhHHHHHhhH--------HHhhhhHH-H-H-hHhccCcccceeehhhhhcchhhHHHHHHHHHhhhhHH------
Confidence 578899999999873 21111110 0 0 1112 135678888887766555567766655543211
Q ss_pred cccCCccHHHHHHHHHHHHHHHHH
Q 001669 373 VNRDPMSTEMLKMRQQLEFLQAEL 396 (1034)
Q Consensus 373 vN~d~~~~ei~~Lr~ql~~L~~eL 396 (1034)
.--.++..++.+|..++.+|
T Consensus 71 ----~gVfqlddi~~qlr~~rtel 90 (499)
T COG4372 71 ----SGVFQLDDIRPQLRALRTEL 90 (499)
T ss_pred ----hhhhhHHHHHHHHHHHHHHH
Confidence 11134556666666666666
No 127
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=9.7 Score=44.72 Aligned_cols=132 Identities=17% Similarity=0.283 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------ChhhhHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 001669 529 LKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASN-------SDGQTQKLQ-------DVHAHKLKSLEAQILDLKKKQ 594 (1034)
Q Consensus 529 lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~-------~~~~~~kl~-------~~~e~kl~eLe~ql~dL~~k~ 594 (1034)
.|..+.++..+|+.+......|+|.+...+...-.+ ..+....+- ..|-.++-+|+.++ ++.+
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneL---Kq~r 120 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENEL---KQLR 120 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHH
Confidence 355666777777777777777777665444332111 011111111 12445555555553 3222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001669 595 ENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKL 667 (1034)
Q Consensus 595 ~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~L 667 (1034)
....+......+++.....+...-+....+| ++|+.+++.++--.+.+--+...|+.+.--++..+..|
T Consensus 121 ~el~~~q~E~erl~~~~sd~~e~~~~~E~qR----~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 121 QELTNVQEENERLEKVHSDLKESNAAVEDQR----RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 2222222222222222222211111111111 66777777777666666667777777666665555444
No 128
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.99 E-value=9.1 Score=44.19 Aligned_cols=113 Identities=28% Similarity=0.265 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001669 608 DEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAA- 686 (1034)
Q Consensus 608 ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~- 686 (1034)
...-..|+-++..+|.-.+.|+.+--.++.+-.+. --...++.+-+.+++.++.+||. ++...+.+.
T Consensus 410 r~eKetLqlelkK~k~nyv~LQEry~~eiQqKnks----vsqclEmdk~LskKeeeverLQ~--------lkgelEkat~ 477 (527)
T PF15066_consen 410 RNEKETLQLELKKIKANYVHLQERYMTEIQQKNKS----VSQCLEMDKTLSKKEEEVERLQQ--------LKGELEKATT 477 (527)
T ss_pred HhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH----HHHHHHHHHHhhhhHHHHHHHHH--------HHHHHHHHHH
Confidence 33445677888899999999887766665543332 22445666777778888888876 555555554
Q ss_pred HHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 687 MATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLK 763 (1034)
Q Consensus 687 a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~ 763 (1034)
++..+|+.+-+. +|.|.+.--.|..+.-..-.++|.+|-..+++|-
T Consensus 478 SALdlLkrEKe~-------------------------------~EqefLslqeEfQk~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 478 SALDLLKREKET-------------------------------REQEFLSLQEEFQKHEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555544332 3334444334555555566677777777777663
No 129
>PRK09039 hypothetical protein; Validated
Probab=94.91 E-value=3.4 Score=47.40 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 608 DEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEE 684 (1034)
Q Consensus 608 ee~~~~Le~ei~~~K~~k~~l~---rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE 684 (1034)
+.++..|..++..++..-.+.. ..++.+++..+.+...++-++..++.+.+..+..+..|+..++. .+.+++.+
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~---a~~~~~~~ 191 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV---ALAQRVQE 191 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3444445555555554444442 44555666666666666666666666666666666555543332 23335556
Q ss_pred HHHHHHHH
Q 001669 685 AAMATKRL 692 (1034)
Q Consensus 685 ~~a~~k~L 692 (1034)
+......+
T Consensus 192 l~~~~~~~ 199 (343)
T PRK09039 192 LNRYRSEF 199 (343)
T ss_pred HHHhHHHH
Confidence 65544444
No 130
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.75 E-value=15 Score=45.44 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 499 SMDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKERDH 553 (1034)
Q Consensus 499 ~l~~el~eL~~~L~~kE~el~~l~~~--~~~~lk~~~e~ki~eLe~ei~~l~~e~~~ 553 (1034)
.+..++..|.++++.++..+...... .+..+....+.+|.+|+..+..+++....
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D 140 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQED 140 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777776666655543322 23445556667777777777666655433
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=7.8 Score=42.20 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 646 REKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAA 686 (1034)
Q Consensus 646 ~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~ 686 (1034)
..+++.+++.+..+++.+|..+...+..++.+|+.+.+-+.
T Consensus 71 ~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 71 LQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666666665555554
No 132
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.53 E-value=9.7 Score=42.35 Aligned_cols=137 Identities=26% Similarity=0.307 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001669 531 QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEA 610 (1034)
Q Consensus 531 ~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~ 610 (1034)
..+++|++.|+.+...|..|...|..+.... .++.+.+-.+--+.+.+...++..| ...-.+.-+.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~----EekEqqLv~dcv~QL~~An~qia~L----------seELa~k~Ee 228 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTY----EEKEQQLVLDCVKQLSEANQQIASL----------SEELARKTEE 228 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc----cHHHHHHHHHHHHHhhhcchhHHHH----------HHHHHHHHHH
Confidence 3556778888888777777777776665554 4444444444444444444444433 3333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 611 AKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEA 685 (1034)
Q Consensus 611 ~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~ 685 (1034)
....+.+|.++-.+.++++++++.=.... .++...+...+.-.+.+..+++.|+.+|..=...|.---+|+
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~En----EeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAEN----EELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777776665433221 122223333344444555666666665544444443333333
No 133
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.49 E-value=12 Score=43.24 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 607 SDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 607 ~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
+++.+..++.-|.++...-..+.-++-.....|-..+...++++..-+-+..+++.++.+|.
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666666666666666777777777777777777777777777777777766664
No 134
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.44 E-value=8.6 Score=41.38 Aligned_cols=59 Identities=22% Similarity=0.388 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 610 AAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 610 ~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
.+..+..+++.+......+..++...-..+...+...+-++..++.+......+...|.
T Consensus 111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~ 169 (239)
T COG1579 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444444444444444444443333333
No 135
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=9.2 Score=41.66 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 626 VQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 626 ~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
+.++..+......+...+.++..-+..+.........++..|+
T Consensus 175 ~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 175 VALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344455555555666666666666666666666666655555
No 136
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.39 E-value=7.1 Score=40.20 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001669 635 EAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALN 671 (1034)
Q Consensus 635 E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~ 671 (1034)
+..+..+..+.+..++..|..+.-+...+...++.+.
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 3333333444455555555555555555544444433
No 137
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.21 E-value=18 Score=44.11 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001669 840 MADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSA 911 (1034)
Q Consensus 840 l~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~ 911 (1034)
+.+--..|+.+..+...++........++..++..+......+..++....-..++.+.....-..++...-
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777777777777777777777777777777677766666666666666666555555554443
No 138
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.20 E-value=8.4 Score=40.34 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=42.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001669 604 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 604 k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~ 669 (1034)
+.++..++..++..++.-...-..|.++++-....|+.....-.+....+..+......++..|..
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777776666655555555555555555555555544
No 139
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.18 E-value=6.6 Score=39.04 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 001669 499 SMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAH 578 (1034)
Q Consensus 499 ~l~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~ 578 (1034)
.+...+..|+.....+|.++..+. +++..|+.++..++..+..+...+.... +....-+.+.+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~------------~K~~~lE~eld~~~~~l~~~k~~lee~~-----~~~~~~E~l~r 80 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQ------------KKNQQLEEELDKLEEQLKEAKEKLEESE-----KRKSNAEQLNR 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHHHh
Confidence 455566666666666666655544 4555555555555555544433333321 11111124555
Q ss_pred HHHHHHHHHH
Q 001669 579 KLKSLEAQIL 588 (1034)
Q Consensus 579 kl~eLe~ql~ 588 (1034)
+++.|+.++.
T Consensus 81 riq~LEeele 90 (143)
T PF12718_consen 81 RIQLLEEELE 90 (143)
T ss_pred hHHHHHHHHH
Confidence 6666666644
No 140
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.13 E-value=5.8 Score=39.41 Aligned_cols=28 Identities=7% Similarity=0.230 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 606 KSDEAAKRLQDEIQFIKAQKVQLQHRIK 633 (1034)
Q Consensus 606 k~ee~~~~Le~ei~~~K~~k~~l~rkl~ 633 (1034)
.+...+..|+.++......-.....+++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444443333
No 141
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.06 E-value=28 Score=45.82 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred hhHHhHHHHHHhhccccCCCCccccCCCchhhhhhhhcCC
Q 001669 294 GLLALGNVISALGDDKKRKEGVHVPYRDSKLTRLLQDSLG 333 (1034)
Q Consensus 294 SL~aL~~vi~aL~~~~~~~~~~~iPyRdSkLTrlLq~sLg 333 (1034)
.+-+|..||.++-.+.+ ..+.+|-.-+-+.+=.+||
T Consensus 108 ~~ktles~~~~~~~g~k----~tlS~r~~d~d~~~~~~lG 143 (1294)
T KOG0962|consen 108 EFKTLESVIWAINDGDR----VTLSGRSADLDAEMPLHLG 143 (1294)
T ss_pred HHHHHhhhheeeecCcc----ccccchhhhhhHHHHHhcC
Confidence 46666667766654332 3567777766666655554
No 142
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.98 E-value=0.015 Score=73.23 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001669 574 DVHAHKLKSLEAQILDLKKKQEN 596 (1034)
Q Consensus 574 ~~~e~kl~eLe~ql~dL~~k~~~ 596 (1034)
++++.++..++.++.+|+.+.+.
T Consensus 263 ~d~~~~~e~le~ei~~L~q~~~e 285 (713)
T PF05622_consen 263 DDLKIELEELEKEIDELRQENEE 285 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544433
No 143
>PRK09039 hypothetical protein; Validated
Probab=93.93 E-value=8.1 Score=44.34 Aligned_cols=137 Identities=12% Similarity=0.184 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 001669 500 MDKELNELNRRLEEKESEMKLVGGS-D-TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHA 577 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~l~~~-~-~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e 577 (1034)
|.+++..++.+|..++.++..+... . .......++..|.+++.++..++.+++.|......... .....+
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~--------~~~~~~ 115 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAG--------AGAAAE 115 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hcchHH
Confidence 4444444444444444444433210 0 11224466777777877777777777776554442200 001122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 578 HKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEG 657 (1034)
Q Consensus 578 ~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~ 657 (1034)
.++..+..++. .....-.....++..|+.+|+.++.+...++..| .............+..|+..+
T Consensus 116 ~~~~~l~~~L~----------~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L----~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 116 GRAGELAQELD----------SEKQVSARALAQVELLNQQIAALRRQLAALEAAL----DASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 23333333322 2222233344456777777777777755444333 333333333444444444333
Q ss_pred h
Q 001669 658 R 658 (1034)
Q Consensus 658 r 658 (1034)
.
T Consensus 182 ~ 182 (343)
T PRK09039 182 N 182 (343)
T ss_pred H
Confidence 3
No 144
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.93 E-value=11 Score=40.87 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001669 630 HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYE 663 (1034)
Q Consensus 630 rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~e 663 (1034)
..|..+...||+...+++.++..|+.+...+..+
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777777776666666666665554444433
No 145
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.88 E-value=14 Score=41.72 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001669 404 SSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDV 439 (1034)
Q Consensus 404 ~~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l 439 (1034)
+.+.+..|..++..+..++..+.+++.....+...+
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l 55 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQL 55 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666777777776666666665555444433
No 146
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.80 E-value=0.035 Score=59.51 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=29.9
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..||||..+.. .. +...|.. +..+...--..+|. +|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g-~~-N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVG-ES-NELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--T-TT-THHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHH
T ss_pred CCCccccCCcC-Cc-HHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHH
Confidence 36999997742 23 5666643 44455442223444 788999999999976
No 147
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.78 E-value=24 Score=44.09 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001669 613 RLQDEIQFIKAQKVQLQHRI 632 (1034)
Q Consensus 613 ~Le~ei~~~K~~k~~l~rkl 632 (1034)
.|..++.++.+.+.++.+..
T Consensus 390 qLr~elaql~a~r~q~eka~ 409 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQ 409 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766544
No 148
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.76 E-value=21 Score=43.36 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001669 407 EVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQR 442 (1034)
Q Consensus 407 ~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l~~~ 442 (1034)
++..|..++..-+....+|.-.+.+.+..|+.+++.
T Consensus 241 qvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~ 276 (786)
T PF05483_consen 241 QVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEK 276 (786)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566667777888888888877654
No 149
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.69 E-value=0.032 Score=60.79 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=29.1
Q ss_pred HhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 68 ECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 68 ~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
--+.|+|..+.+--++.|+..||||||||+||
T Consensus 111 LglP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 111 LGLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred cCCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 34678889999999999999999999999998
No 150
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=22 Score=43.36 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 530 KQHFGKKIAELEDEKRTVQKERDH 553 (1034)
Q Consensus 530 k~~~e~ki~eLe~ei~~l~~e~~~ 553 (1034)
+.+|+..+.+++.+..-.+.....
T Consensus 160 r~k~dss~s~~q~e~~~~~~~~~~ 183 (716)
T KOG4593|consen 160 RNKLDSSLSELQWEVMLQEMRAKR 183 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444444333
No 151
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.66 E-value=7.9 Score=41.66 Aligned_cols=113 Identities=25% Similarity=0.221 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHH
Q 001669 643 KASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEK 722 (1034)
Q Consensus 643 k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~ 722 (1034)
.+++|..+..|+++...++++|..|++-+++|+.. +++......-|+-+... +...-.+-+
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK----~e~ek~e~s~LkREnq~---------------l~e~c~~le 80 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQK----VEEEKNEYSALKRENQS---------------LMESCENLE 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHhhhhhhhhhhhhh---------------HHHHHHHHH
Confidence 34566666777777777788888887777766532 22222222222211110 001223455
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Q 001669 723 SFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLS 774 (1034)
Q Consensus 723 ~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~ 774 (1034)
+.+.++.+++-... .+.-+++.+..-.....++..|+..++.+++-......
T Consensus 81 k~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 81 KTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67889999998877 47777788888778888888888888877776655444
No 152
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.54 E-value=23 Score=43.08 Aligned_cols=140 Identities=24% Similarity=0.268 Sum_probs=86.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001669 604 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQL---RKEGRRNEYERHKLQALNQRQKLVLQR 680 (1034)
Q Consensus 604 k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qL---k~e~rk~e~el~~Lq~~~e~q~~vlkr 680 (1034)
..-..+.+..|+.+|..++..-.+..-++..+.+.+++....++.....+ +.+.+....++..+....-.+.+-+..
T Consensus 283 ~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~ 362 (511)
T PF09787_consen 283 RDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQL 362 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 33444445555555555555555555566666666666665555555444 666777778888888777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 001669 681 KTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMV-----NVHEVRFDYEKQSQVRAAL 755 (1034)
Q Consensus 681 k~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~-----~l~e~~~~~~~~~e~r~~l 755 (1034)
++.+-...+.+|+..+.++.. ...| .|+|-.. .+-.-...++.+...+.++
T Consensus 363 k~~~ke~E~q~lr~~l~~~~~----------------------~s~~--~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al 418 (511)
T PF09787_consen 363 KLKEKESEIQKLRNQLSARAS----------------------SSSW--NELESRLTQLTESLIQKQTQLESLGSEKNAL 418 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------------------cCCc--HhHHHHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 888888788888887765330 1122 2333322 2344455666777777777
Q ss_pred HHHHHHHHhhhH
Q 001669 756 AEELAVLKQVDE 767 (1034)
Q Consensus 756 ~~EL~~L~~~~e 767 (1034)
.=.|+.+...+.
T Consensus 419 ~lqlErl~~~l~ 430 (511)
T PF09787_consen 419 RLQLERLETQLK 430 (511)
T ss_pred cccHHHHHHHHH
Confidence 777777765544
No 153
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.52 E-value=7.4 Score=44.33 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 570 QKLQDVHAHKLKSLEAQILDLKKKQEN 596 (1034)
Q Consensus 570 ~kl~~~~e~kl~eLe~ql~dL~~k~~~ 596 (1034)
..+..++..+...|+.++..|+.....
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555666666666666654443
No 154
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.49 E-value=15 Score=40.67 Aligned_cols=56 Identities=14% Similarity=0.316 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001669 614 LQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 614 Le~ei~~~K~~k~~l~---rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~ 669 (1034)
+..++..+...+-.+- +.|.+.+..++..+..+..++.+|+......-..+..|-.
T Consensus 32 l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~ 90 (294)
T COG1340 32 LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRK 90 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333433333 5566666666666766777777776666555555544433
No 155
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.42 E-value=25 Score=43.22 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 860 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLAR 909 (1034)
Q Consensus 860 ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~ 909 (1034)
.|......+....+.+......+..+...-.++-......|..+....|=
T Consensus 459 ~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRY 508 (560)
T PF06160_consen 459 ELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRY 508 (560)
T ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444445555555555555555665666666666666666555554
No 156
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.39 E-value=11 Score=38.89 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001669 678 LQRKTEEAAMATKRLKELL 696 (1034)
Q Consensus 678 lkrk~eE~~a~~k~Lke~l 696 (1034)
|..-++|+.+.+.+|.+.+
T Consensus 170 y~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 170 YRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666655
No 157
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=93.26 E-value=16 Score=40.30 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCC--cccccccccc
Q 001669 867 EIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPSPMS--VPAQKQLKYT 944 (1034)
Q Consensus 867 ~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 944 (1034)
.+.-+..+++-|....+.+..++.+|...++..+.. +++++.+-+.++|-|..+ .+..+++.-+
T Consensus 293 ~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~--------------v~~k~~~~~la~pe~~~~~~~~~~~~~~ts 358 (391)
T KOG1850|consen 293 EYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQ--------------VSAKNAMKDLATPESKPCIILDSEKKLNTS 358 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc--------------cchhhhhhhhcCccccccccccchhccCCc
Confidence 345556666666666777777777777666655443 344555566666555332 2333444443
Q ss_pred cCcc
Q 001669 945 PGIA 948 (1034)
Q Consensus 945 ~~~~ 948 (1034)
|-.+
T Consensus 359 ~~~a 362 (391)
T KOG1850|consen 359 SKRA 362 (391)
T ss_pred hhcc
Confidence 3333
No 158
>PRK06893 DNA replication initiation factor; Validated
Probab=93.11 E-value=0.059 Score=58.17 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=32.1
Q ss_pred CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 46 ~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..++||..++.. + .. + +..+...+-.++|..++-||++|+||||.+
T Consensus 10 ~~~~~fd~f~~~~-~-~~-~----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 10 IDDETLDNFYADN-N-LL-L----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CCcccccccccCC-h-HH-H----HHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 3468999999632 2 22 1 222233344577888999999999999987
No 159
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.99 E-value=32 Score=43.21 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.6
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
+++-||+.|+|||+.|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999987
No 160
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.97 E-value=12 Score=38.41 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001669 380 TEMLKMRQQLEFLQAEL 396 (1034)
Q Consensus 380 ~ei~~Lr~ql~~L~~eL 396 (1034)
++|..+...|..|+.++
T Consensus 4 ~~va~lnrri~~leeel 20 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEEL 20 (205)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34555666666665555
No 161
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=92.89 E-value=15 Score=38.98 Aligned_cols=81 Identities=25% Similarity=0.460 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 001669 528 ALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLK-----KKQENQVQLLK 602 (1034)
Q Consensus 528 ~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~-----~k~~~~~~l~k 602 (1034)
.+-..|..++.+|+.++..-..+...+..++..+ .....++...+.++.+|+.++...+ ...+...++..
T Consensus 40 ~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l-----~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~ 114 (206)
T PF14988_consen 40 ELVSRYAKQTSELQDQLLQKEKEQAKLQQELQAL-----KEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQ 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999988888888888888888876 3466777778889999998877544 23444566677
Q ss_pred HHHhHHHHHHH
Q 001669 603 QKQKSDEAAKR 613 (1034)
Q Consensus 603 ~k~k~ee~~~~ 613 (1034)
.|..++..+.+
T Consensus 115 EK~~LEke~~e 125 (206)
T PF14988_consen 115 EKARLEKEASE 125 (206)
T ss_pred HHHHHHHHHHH
Confidence 77777665533
No 162
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.86 E-value=18 Score=39.86 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 634 QEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELL 696 (1034)
Q Consensus 634 ~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~l 696 (1034)
.+++....--...+|-+..+.... ..-+..|++..+++.-+|..+.+|+...--.|++-+
T Consensus 235 QQLddA~~K~~~kek~ViniQ~~f---~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 235 QQLDDAHNKADNKEKTVINIQDQF---QDIVKKLQAESEKQVLLLEERNKELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444333333444555444333 223567777778888888888888887777777755
No 163
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.77 E-value=34 Score=42.88 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 635 EAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLK 693 (1034)
Q Consensus 635 E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lk 693 (1034)
+++..+....+.++++..|...+.+...+...+..+++.+...|..--.|+.....+++
T Consensus 453 Qle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~ 511 (980)
T KOG0980|consen 453 QLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELE 511 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444456777777777777777777777776666665554444444444333333
No 164
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.71 E-value=10 Score=46.53 Aligned_cols=73 Identities=23% Similarity=0.385 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH
Q 001669 498 NSMDKELNELNRRLEEKESEMKLVGGS-------DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQ 570 (1034)
Q Consensus 498 ~~l~~el~eL~~~L~~kE~el~~l~~~-------~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~ 570 (1034)
.+|...++-|+.+|.+.|...+..... .++.+.-.++.++.|.......|+.--++|++.+++. .+..+
T Consensus 397 aqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q----~~Enk 472 (861)
T PF15254_consen 397 AQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQ----KEENK 472 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH----HHHHH
Confidence 357778888999998888655443311 2456677888888888888888888888888877776 44445
Q ss_pred HHHH
Q 001669 571 KLQD 574 (1034)
Q Consensus 571 kl~~ 574 (1034)
++..
T Consensus 473 ~~~~ 476 (861)
T PF15254_consen 473 RLRK 476 (861)
T ss_pred HHHH
Confidence 4443
No 165
>PRK06620 hypothetical protein; Validated
Probab=92.68 E-value=0.065 Score=57.18 Aligned_cols=49 Identities=29% Similarity=0.339 Sum_probs=33.0
Q ss_pred CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCc---eeEEEeccCCCCcceec
Q 001669 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYN---ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 46 ~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n---~ti~ayG~tgSGKT~Tm 99 (1034)
...|+||..+.. .+ +...|..+.. +.+. -|+| -.++-||++||||||.+
T Consensus 10 ~~~~tfd~Fvvg-~~-N~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 10 SSKYHPDEFIVS-SS-NDQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCCchhhEec-cc-HHHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 346999998853 23 6667765433 3321 1443 35899999999999988
No 166
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.37 E-value=7.5 Score=37.32 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 577 AHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQH 630 (1034)
Q Consensus 577 e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~r 630 (1034)
..++..|+.++.+|+.+.+. ++.+-..-.+.+..|+..|..+|...-..+.
T Consensus 67 ~~~~~~L~~el~~l~~ry~t---~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQT---LLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887777665555 4444445566788899999998887765543
No 167
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=26 Score=40.55 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=85.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001669 599 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVL 678 (1034)
Q Consensus 599 ~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vl 678 (1034)
.+.+++.++-+.+..-++.++.+-.+-+.+.++|..-..+....+.-+..++.+|+.+..-.+.+-.+ -..++.-..-|
T Consensus 276 ~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL 354 (521)
T KOG1937|consen 276 KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDL 354 (521)
T ss_pred HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHH
Confidence 45555555555555666666666666666666777666777777777777788888777666555333 12222223334
Q ss_pred HHHHHHHH---HHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 679 QRKTEEAA---MATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAAL 755 (1034)
Q Consensus 679 krk~eE~~---a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l 755 (1034)
.-..+|+. ...+.|.-+++ ....+-.++.+.....|+...+...+....+..+++..|
T Consensus 355 ~a~~eei~~~eel~~~Lrsele-------------------~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreL 415 (521)
T KOG1937|consen 355 EAVDEEIESNEELAEKLRSELE-------------------KLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETREL 415 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHh-------------------cCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444443 23333333333 122333466777777777777777777777777777777
Q ss_pred HHHHHHH
Q 001669 756 AEELAVL 762 (1034)
Q Consensus 756 ~~EL~~L 762 (1034)
..|...+
T Consensus 416 qkq~ns~ 422 (521)
T KOG1937|consen 416 QKQENSE 422 (521)
T ss_pred HHHHHHH
Confidence 7776654
No 168
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.28 E-value=17 Score=38.34 Aligned_cols=18 Identities=0% Similarity=0.089 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001669 380 TEMLKMRQQLEFLQAELC 397 (1034)
Q Consensus 380 ~ei~~Lr~ql~~L~~eL~ 397 (1034)
..|..|+.+|..++....
T Consensus 27 ~lIksLKeei~emkk~e~ 44 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEE 44 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457778888887766553
No 169
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.04 E-value=38 Score=41.74 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH
Q 001669 530 KQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQL-LKQKQKSD 608 (1034)
Q Consensus 530 k~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l-~k~k~k~e 608 (1034)
...|..-+..|+..+..++.+.+....-..+ ..-.+++.+-...+..+..|+..+.++ =.+ ..++...-
T Consensus 156 ~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~---GD~~~A~eil~~l~~~~~~l~~~~e~I-------P~l~~~l~~~~P 225 (560)
T PF06160_consen 156 SFSYGPAIEELEKQLENIEEEFSEFEELTEN---GDYLEAREILEKLKEETDELEEIMEDI-------PKLYKELQKEFP 225 (560)
T ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHhH
Confidence 4556666777777777777766664433322 123344444444444444444444322 222 22345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001669 609 EAAKRLQDEIQFIKAQKVQLQH-RIKQEAEQFRQWKASR 646 (1034)
Q Consensus 609 e~~~~Le~ei~~~K~~k~~l~r-kl~~E~~~~r~~k~~~ 646 (1034)
.++..|..-...|+...-.+.. .+..++...++.....
T Consensus 226 ~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~ 264 (560)
T PF06160_consen 226 DQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEA 264 (560)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6666777666666666555442 3444444444443333
No 170
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.99 E-value=25 Score=39.62 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 567 GQTQKLQDVHAHKLKSLEAQILDLK----KKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQW 642 (1034)
Q Consensus 567 ~~~~kl~~~~e~kl~eLe~ql~dL~----~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~ 642 (1034)
.-...++..|-..++.+..++..|. +|.-+..+|...-...++++..-+.+-+.+-+-...|-.++..|+.++|..
T Consensus 410 sdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtl 489 (593)
T KOG4807|consen 410 SDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTL 489 (593)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456677778888888888877554 455555666666666666677777777777777777777888888887776
Q ss_pred HH----------HHHHHHHHHHHHhhhhHHHHHHHHH
Q 001669 643 KA----------SREKELLQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 643 k~----------~~eke~~qLk~e~rk~e~el~~Lq~ 669 (1034)
.. ...|.-..|+--+|-++.+|.-|..
T Consensus 490 ltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKq 526 (593)
T KOG4807|consen 490 LTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQ 526 (593)
T ss_pred hccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHH
Confidence 43 2355556666666777777666654
No 171
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.97 E-value=47 Score=42.67 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=26.3
Q ss_pred cCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhccc
Q 001669 331 SLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQ 368 (1034)
Q Consensus 331 sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~ 368 (1034)
+.+|.+.+.+|-.-.-+...|.+.|..+.+--.|||+-
T Consensus 91 ~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFL 128 (1141)
T KOG0018|consen 91 AINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFL 128 (1141)
T ss_pred hhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEE
Confidence 33455667777666666667777888888777777774
No 172
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.86 E-value=22 Score=38.75 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=21.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 602 KQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQ 641 (1034)
Q Consensus 602 k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~ 641 (1034)
.+..++++-...+...|..++..|......+..+++.+..
T Consensus 150 ~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 150 NILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555554444
No 173
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.64 E-value=56 Score=42.88 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001669 534 GKKIAELEDEKRTVQKERDHLLT 556 (1034)
Q Consensus 534 e~ki~eLe~ei~~l~~e~~~L~~ 556 (1034)
..++..++..+..+...++.+..
T Consensus 321 ~~~l~~~~~~~~~~~~~~~~l~~ 343 (908)
T COG0419 321 LEKLKSLEERLEKLEEKLEKLES 343 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 174
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.52 E-value=21 Score=43.20 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh----h---hh
Q 001669 500 MDKELNELNRRLEEKESEMKLVGGSD---TAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSD----G---QT 569 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~l~~~~---~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~----~---~~ 569 (1034)
+++++.+++.++...|..+..+.... .......+..++..++.++...+.++..+...+..+...-. . ..
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~ 245 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGS 245 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCccc
Confidence 45566666677776666666554211 11112234455666666666666555554444443321000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001669 570 QKLQDVHAHKLKSLEAQILDLKK 592 (1034)
Q Consensus 570 ~kl~~~~e~kl~eLe~ql~dL~~ 592 (1034)
...-..+..++.+++.++.+|..
T Consensus 246 ~~~~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 246 SVANSELDGRIEALEKQLDALRL 268 (498)
T ss_pred ccCCCchHHHHHHHHHHHHHHHH
Confidence 00112345677778888776654
No 175
>PRK09087 hypothetical protein; Validated
Probab=91.52 E-value=0.12 Score=55.64 Aligned_cols=47 Identities=26% Similarity=0.212 Sum_probs=32.1
Q ss_pred CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 46 ~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+||..+.. .+ +..+|.. +.....-.+..++-||++||||||.+
T Consensus 15 ~~~~~~~~Fi~~-~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 15 DPAYGRDDLLVT-ES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCCChhceeec-Cc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHH
Confidence 356899998852 23 5667763 33322223556899999999999988
No 176
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.45 E-value=15 Score=35.96 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 673 RQKLVLQRKTEEAAMATKRLKELL 696 (1034)
Q Consensus 673 ~q~~vlkrk~eE~~a~~k~Lke~l 696 (1034)
.+...+++++.++...|+-|-..+
T Consensus 105 ~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 105 KELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 177
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.41 E-value=21 Score=37.48 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 535 KKIAELEDEKRTVQKERDHLLTEIENL 561 (1034)
Q Consensus 535 ~ki~eLe~ei~~l~~e~~~L~~el~~~ 561 (1034)
.+|.+|+.++.+++..++.+..|-..+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~L 38 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTL 38 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777765555444
No 178
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.26 E-value=16 Score=46.16 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 629 QHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ-----------ALNQRQKLVLQRKTEEAAMATKRLKE 694 (1034)
Q Consensus 629 ~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq-----------~~~e~q~~vlkrk~eE~~a~~k~Lke 694 (1034)
.+++++|++.++.....+..-+.++++..++.+..+..-. .|.+.=+.+|+.+.+++...++.++.
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666665556666555555444333111 11111124566666666655555554
No 179
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.04 E-value=20 Score=44.13 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcccCCcccccCCccHHHHHHHHHHHHHHHHH
Q 001669 351 AEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQAEL 396 (1034)
Q Consensus 351 ~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ei~~Lr~ql~~L~~eL 396 (1034)
.+.+++.|=+.....+|+.-.-+..-|...|...||+++..|+.+|
T Consensus 365 vE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqql 410 (861)
T PF15254_consen 365 VEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQL 410 (861)
T ss_pred HHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4555555666655666655555555555556666666666666666
No 180
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.91 E-value=30 Score=38.44 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 631 RIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 700 (1034)
Q Consensus 631 kl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 700 (1034)
++..++-+.+..-....-+...|+.-.++.+.|-..++.+++.-......|.+|.+..+++|.|++.-..
T Consensus 110 kL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq 179 (401)
T PF06785_consen 110 KLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ 179 (401)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666667777777777777777887777888889999999999998887554
No 181
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.89 E-value=53 Score=41.28 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 001669 723 SFQRWLDHELEVM 735 (1034)
Q Consensus 723 ~~k~wl~~ElE~~ 735 (1034)
+++.++....+.+
T Consensus 487 ~~~~~l~~~~~~l 499 (650)
T TIGR03185 487 KAKKTLKEFREKL 499 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 182
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.82 E-value=47 Score=41.08 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHH
Q 001669 794 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLL 847 (1034)
Q Consensus 794 ~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l 847 (1034)
.+.++-|..++..+..+.......+.++.... ..+|+.+.+=.|.+...
T Consensus 225 ~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~-----~~LWn~l~ts~Ee~~~f 273 (660)
T KOG4302|consen 225 DETLDRLDKMVKKLKEEKKQRLQKLQDLRTKL-----LELWNLLDTSDEERQRF 273 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhccCCHHHHHHH
Confidence 35666677777777766666667777776655 36688877766666544
No 183
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.74 E-value=33 Score=38.69 Aligned_cols=218 Identities=18% Similarity=0.216 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh-----------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 001669 532 HFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDG-----------QTQKLQDVHAHKLKSLEAQIL-DLKKKQENQVQ 599 (1034)
Q Consensus 532 ~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~-----------~~~kl~~~~e~kl~eLe~ql~-dL~~k~~~~~~ 599 (1034)
.+++.|.+|+.++.....+.+.+...+...+....- ....+.+.+.+++.+|..+.. +|.+.+++-.+
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdr 374 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDR 374 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777666666555544444443222110 011122223344444444432 22222222222
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 600 LLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ-HRI------KQEA----EQFRQWKASREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 600 l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~-rkl------~~E~----~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
|+ .+....--+.|+.||..+..-+ +.+ .... .++.+..+...+++.-|-.+...+=.+...|-
T Consensus 375 LL------AEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLa 448 (593)
T KOG4807|consen 375 LL------AEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLA 448 (593)
T ss_pred hh------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1223333455777777766544 222 1122 23334455566777777777777777777777
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccc-cccCCcccc-cccHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 669 ALNQRQKLV---LQRKTEEAAMATKRLKELLESRKSSARENSA-VTNGNLTNG-QSNEKSFQRWLDHELEVMVNVHEVRF 743 (1034)
Q Consensus 669 ~~~e~q~~v---lkrk~eE~~a~~k~Lke~le~~k~~~r~~~~-~~~~~~~~~-~~~~~~~k~wl~~ElE~~~~l~e~~~ 743 (1034)
..++++... -++...|+.+.|.+|.--|..+-...|.--. ...|++.+. +.+. +=|+|++.++.|.
T Consensus 449 qalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkd-------ayELEVLLRVKEs-- 519 (593)
T KOG4807|consen 449 QALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKD-------AYELEVLLRVKES-- 519 (593)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcc-------hhhHHHHHHhhHH--
Confidence 777765433 5677888888888887777666433332211 112222221 1211 2688898887664
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001669 744 DYEKQSQVRAALAEELAVLKQ 764 (1034)
Q Consensus 744 ~~~~~~e~r~~l~~EL~~L~~ 764 (1034)
.+.++..+...|-.||+...+
T Consensus 520 EiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 520 EIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566777777778888875433
No 184
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.65 E-value=16 Score=46.71 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=15.1
Q ss_pred CCceeEEEeecCCCccCHHHHHHHHH
Q 001669 334 GNSRTVMIACISPADINAEETLNTLK 359 (1034)
Q Consensus 334 gns~t~~I~~vsp~~~~~~eTl~TL~ 359 (1034)
+.+.++-|..-+|++.-...-.|++-
T Consensus 152 ~~s~ii~Is~~~~dP~~Aa~iaN~la 177 (754)
T TIGR01005 152 EKTRIIAIEFRSEDPKLAAAIPDAIA 177 (754)
T ss_pred CccEEEEEEEecCCHHHHHHHHHHHH
Confidence 34566666666666655555555554
No 185
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.41 E-value=27 Score=37.14 Aligned_cols=16 Identities=44% Similarity=0.501 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001669 629 QHRIKQEAEQFRQWKA 644 (1034)
Q Consensus 629 ~rkl~~E~~~~r~~k~ 644 (1034)
+.+|++|+..+|+..+
T Consensus 166 vqRLkdEardlrqela 181 (333)
T KOG1853|consen 166 VQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666655555443
No 186
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.39 E-value=27 Score=36.98 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001669 626 VQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQ 672 (1034)
Q Consensus 626 ~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e 672 (1034)
.....+|....+..-..+.....++..|+..+++.+..+..|+..++
T Consensus 139 ~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 139 AHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555556666677777777777777777777765444
No 187
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.14 E-value=32 Score=38.93 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 569 TQKLQDVHAHKLKSLEAQILDLKKKQEN 596 (1034)
Q Consensus 569 ~~kl~~~~e~kl~eLe~ql~dL~~k~~~ 596 (1034)
...+...+.++...|..++..|++....
T Consensus 170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 170 LNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455555666777777777766655555
No 188
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.90 E-value=30 Score=36.85 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001669 630 HRIKQEAEQFRQWKASREKE 649 (1034)
Q Consensus 630 rkl~~E~~~~r~~k~~~eke 649 (1034)
.+|++|+..|++.-.++|++
T Consensus 30 ~~~reEl~EFQegSrE~Eae 49 (333)
T KOG1853|consen 30 LQMREELNEFQEGSREIEAE 49 (333)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 46778888888776665543
No 189
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=89.81 E-value=82 Score=41.75 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 626 VQLQHRIKQEAEQFRQWKASREKELLQLRKE 656 (1034)
Q Consensus 626 ~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e 656 (1034)
..-.++++.+.+..+..+...++++..|..-
T Consensus 832 ~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~ 862 (1294)
T KOG0962|consen 832 QESLDKLRKEIECLQKEVIEQEREISRLINL 862 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333555555555555555555555554433
No 190
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.80 E-value=54 Score=39.66 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=17.6
Q ss_pred CCCceeEEEeecCCCccCHHHHHHHH
Q 001669 333 GGNSRTVMIACISPADINAEETLNTL 358 (1034)
Q Consensus 333 ggns~t~~I~~vsp~~~~~~eTl~TL 358 (1034)
.|++.++-|..-+|++.-...-.+++
T Consensus 118 ~~~s~vi~Is~~~~dP~~Aa~i~n~l 143 (498)
T TIGR03007 118 AGRDNLFTISYEDKDPELAKDVVQTL 143 (498)
T ss_pred cCCCCeEEEEeeCCCHHHHHHHHHHH
Confidence 35667777777777776666666665
No 191
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=89.75 E-value=50 Score=39.20 Aligned_cols=119 Identities=24% Similarity=0.271 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHH
Q 001669 501 DKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKL 580 (1034)
Q Consensus 501 ~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl 580 (1034)
..+...+..++...-++|..-......-+...+++.+..|+..+...+..+-.....+... -...=.++..-+++++
T Consensus 166 d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreE---lE~rW~~lq~l~Ee~l 242 (531)
T PF15450_consen 166 DNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREE---LESRWQKLQELTEERL 242 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3344445555555555554433233344556666777777777776666555543333221 0222345666777788
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001669 581 KSLEAQIL-DLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIK 622 (1034)
Q Consensus 581 ~eLe~ql~-dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K 622 (1034)
..|..++. .+...+.+..++.....++.+++..|+.-++.-.
T Consensus 243 ~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q 285 (531)
T PF15450_consen 243 RALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQ 285 (531)
T ss_pred HHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88888777 4555555555666666666666666665554433
No 192
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.60 E-value=18 Score=36.13 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001669 626 VQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALN 671 (1034)
Q Consensus 626 ~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~ 671 (1034)
..+...++.+-+.++..+....--..+...+.++++.|+.+|+.++
T Consensus 104 ~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 104 KSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444445566667777777777776643
No 193
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.48 E-value=0.17 Score=61.44 Aligned_cols=49 Identities=24% Similarity=0.438 Sum_probs=33.7
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..|+||..+... + +...|. .+..++...-.+||. ||-||.+|+||||.+
T Consensus 283 ~~~TFDnFvvG~-s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIGA-S-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCCC-c-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 469999876422 3 444553 344555554456776 789999999999987
No 194
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.46 E-value=0.22 Score=59.13 Aligned_cols=49 Identities=22% Similarity=0.393 Sum_probs=32.4
Q ss_pred CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 46 ~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+||..+. . ..+...|..+ ..++.. -..||. +|-||++|+||||.+
T Consensus 99 ~~~~tFdnFv~-g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 99 NPDYTFENFVV-G-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCCccccccc-C-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 35699999774 2 2355556543 333332 123675 899999999999987
No 195
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.35 E-value=0.43 Score=56.97 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=30.7
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..|+||.... ... +...|.. +..+...--..|| .+|-||++|+||||.+
T Consensus 117 ~~~tfd~fv~-g~~-n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCccccccc-CCC-cHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 5789998543 222 4445543 3444443223445 4788999999999987
No 196
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.34 E-value=33 Score=43.94 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 499 SMDKELNELNRRLEEKESEMKLVGGS-DT--AALKQHFGKKIAELEDEKRTVQKERDHLLTEIE 559 (1034)
Q Consensus 499 ~l~~el~eL~~~L~~kE~el~~l~~~-~~--~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~ 559 (1034)
=++.++.++.++++..|..+..+... .. .....-.++++.++..++...+.++........
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777666432 10 001112346677777777766666655444333
No 197
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.14 E-value=25 Score=34.79 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001669 536 KIAELEDEKRTVQKE 550 (1034)
Q Consensus 536 ki~eLe~ei~~l~~e 550 (1034)
+|..|+.++...+.+
T Consensus 25 ~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 25 HVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 198
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.04 E-value=0.25 Score=61.38 Aligned_cols=93 Identities=22% Similarity=0.397 Sum_probs=58.6
Q ss_pred eeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccH----hHHHHHHHHHHH
Q 001669 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGII----PLVMNVLFSKIE 124 (1034)
Q Consensus 49 f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Gli----pr~~~~LF~~i~ 124 (1034)
|....=|.|.+. |..-|. .++..+-.|....+ .+|.|||||||||..-+.....+-|| ......|++.+.
T Consensus 2 f~~~~~~~~~~~-Q~~ai~----~l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKAIA----KLVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHHHH----HHHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 444455778776 555444 46666666643333 68999999999984322221223333 134566777766
Q ss_pred hcccCccEEEEEeeeeechhhhh
Q 001669 125 TLKDQTEFQLHVSFIEILKEEVR 147 (1034)
Q Consensus 125 ~~~~~~~~~v~vS~~EIy~e~v~ 147 (1034)
..-....+...||||..|.-+.|
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HhCCCCeEEEEeeecccCCcccc
Confidence 65455568889999999987655
No 199
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.95 E-value=0.35 Score=56.85 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=24.5
Q ss_pred hhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 72 PLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 72 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..+..++..-++.|+.-||||||||+||
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTL 275 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTL 275 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 4455678888999999999999999999
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.95 E-value=19 Score=41.66 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001669 630 HRIKQEAEQFRQWKASREKELLQLRKEGRRNE 661 (1034)
Q Consensus 630 rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e 661 (1034)
.++++..++..+.....+..+..|+.+++.+=
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 44455555555555556666666665555443
No 201
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.86 E-value=19 Score=34.55 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=30.5
Q ss_pred ccccCCccHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001669 372 IVNRDPMSTEMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCT 437 (1034)
Q Consensus 372 ~vN~d~~~~ei~~Lr~ql~~L~~eL~~~~~~~~~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~ 437 (1034)
.++..+....+.+|..+|..++.++. .++.++..+..+...+..++-.+-..+.
T Consensus 8 ~~~~~~~~~~ve~L~s~lr~~E~E~~------------~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 8 TSSGGPSVQLVERLQSQLRRLEGELA------------SLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555667777777776655553 3455566666666665555554444433
No 202
>PRK05642 DNA replication initiation factor; Validated
Probab=88.43 E-value=0.31 Score=52.81 Aligned_cols=48 Identities=19% Similarity=0.443 Sum_probs=28.3
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCC-ceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~-n~ti~ayG~tgSGKT~Tm 99 (1034)
..|+||..+. . . +...+.. +..+.... .++ ...++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~-~-~-~~~a~~~-~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYP-G-A-NAAALGY-VERLCEAD-AGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCc-C-C-hHHHHHH-HHHHhhcc-ccCCCCeEEEECCCCCCHHHHH
Confidence 4689999773 2 2 3333322 22222211 122 346788999999999987
No 203
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.84 E-value=0.33 Score=56.27 Aligned_cols=50 Identities=26% Similarity=0.324 Sum_probs=31.4
Q ss_pred CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 46 ~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+||.... ..+ +.-.|. +...|.....+..--||-||++|+||||-|
T Consensus 81 ~~~ytFdnFv~-g~~-N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVV-GPS-NRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheee-CCc-hHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 45699999774 333 444443 223333333333445788999999999998
No 204
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.76 E-value=30 Score=34.17 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 732 LEVMVNVHEVRFDYEKQSQVRAALAEELAVLK 763 (1034)
Q Consensus 732 lE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~ 763 (1034)
+.+...+.+++.....+.+.-..+.++|+...
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQ 37 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566666665553
No 205
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.47 E-value=0.88 Score=52.59 Aligned_cols=52 Identities=21% Similarity=0.435 Sum_probs=31.8
Q ss_pred hHHHhhcCC-ceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeec
Q 001669 73 LVDGLFQGY-NATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEIL 142 (1034)
Q Consensus 73 lv~~~l~G~-n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy 142 (1034)
++..++.|. ...++.||+||+|||.|+ ..+++.+....... ..+.|-|.++.
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~-----------------~~v~~~l~~~~~~~-~~~yINc~~~~ 84 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATV-----------------KFVMEELEESSANV-EVVYINCLELR 84 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHH-----------------HHHHHHHHhhhccC-ceEEEeeeeCC
Confidence 344445544 444999999999999987 45555555432221 15666666553
No 206
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.47 E-value=47 Score=42.00 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=11.6
Q ss_pred CCCCCCceeEecCCCcEE
Q 001669 170 VPGKPPIQIRETSNGVIT 187 (1034)
Q Consensus 170 ~~~~~~l~i~e~~~~~~~ 187 (1034)
.|.-|++-|--..+|.++
T Consensus 293 l~~~p~~~via~~~G~l~ 310 (717)
T PF10168_consen 293 LPSLPPVLVIATSNGKLY 310 (717)
T ss_pred ecCCCCEEEEEecCCeEE
Confidence 455566666666777665
No 207
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.28 E-value=31 Score=33.76 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 724 FQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVL 762 (1034)
Q Consensus 724 ~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L 762 (1034)
...|..+.-..-..+.++...+..+...+.-|-.+|+.+
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356777776666677788888888888888877777643
No 208
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.92 E-value=45 Score=37.74 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 607 SDEAAKRLQDEIQFIKAQKVQLQH 630 (1034)
Q Consensus 607 ~ee~~~~Le~ei~~~K~~k~~l~r 630 (1034)
.+.++..+...|+....++.++..
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555544444444443
No 209
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=86.90 E-value=24 Score=42.23 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 500 MDKELNELNRRLEEKESEMKLVGGS---DTAALKQHFGKKIAELEDEKRTVQKERDH 553 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~l~~~---~~~~lk~~~e~ki~eLe~ei~~l~~e~~~ 553 (1034)
++++..+-++.+..-|.+|..+.+. ++...+-+|+.+++.-..++..|++.+..
T Consensus 193 lEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~e 249 (861)
T KOG1899|consen 193 LEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSE 249 (861)
T ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhh
Confidence 3444444444444444444333321 33344556777777666666666665544
No 210
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.89 E-value=87 Score=38.54 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=20.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 727 WLDHELEVMV----NVHEVRFDYEKQSQVRAALAEELAVLKQ 764 (1034)
Q Consensus 727 wl~~ElE~~~----~l~e~~~~~~~~~e~r~~l~~EL~~L~~ 764 (1034)
.+..|+|-+. +++.....+..+.-++..+..+|...+.
T Consensus 279 ~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~ 320 (716)
T KOG4593|consen 279 LLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWER 320 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555544 3455555666666666666666665443
No 211
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.69 E-value=37 Score=37.07 Aligned_cols=62 Identities=29% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001669 633 KQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQ---KLVLQRKTEEAAMATKRLKE 694 (1034)
Q Consensus 633 ~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q---~~vlkrk~eE~~a~~k~Lke 694 (1034)
..+...+........++...|..+.+....++..|....++. ..-|+.+..++.....+-++
T Consensus 60 ee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 60 EEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555556666666666665555544422 23345444444443333333
No 212
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.55 E-value=1.1e+02 Score=39.32 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 608 DEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAM 687 (1034)
Q Consensus 608 ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a 687 (1034)
=.++..|.+.|...+.+......-=+. .-+.-..++.++-.|.....+....+..+...+...+++|-.+++++..
T Consensus 834 p~t~~eld~~I~~e~t~~~~~~n~ne~----~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~ 909 (1072)
T KOG0979|consen 834 PTTMDELDQAITDELTRALKFENVNED----AVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVE 909 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 335677777777766654443311111 2222334667777888888888888888888888888888888888764
Q ss_pred H
Q 001669 688 A 688 (1034)
Q Consensus 688 ~ 688 (1034)
.
T Consensus 910 ~ 910 (1072)
T KOG0979|consen 910 Q 910 (1072)
T ss_pred H
Confidence 3
No 213
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.49 E-value=1.5e+02 Score=40.79 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001669 613 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALN 671 (1034)
Q Consensus 613 ~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~ 671 (1034)
.+..++..+......+...+..++...+.......+++..+.++.......+..+..+.
T Consensus 907 ~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 907 EASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433334555566666666666666666666666666665555555554
No 214
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.42 E-value=0.42 Score=51.78 Aligned_cols=47 Identities=13% Similarity=0.325 Sum_probs=30.1
Q ss_pred CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 46 ~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..|+||..+. . . +...+.. +..++. ......++-||++|+||||.+
T Consensus 16 ~~~~~fd~f~~-~-~-n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 16 PDDETFASFYP-G-D-NDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCcCCcccccc-C-c-cHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 35689998664 3 3 4555543 233322 222347899999999999988
No 215
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.40 E-value=0.46 Score=55.94 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=30.3
Q ss_pred CceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 46 ~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..|+||.... . ..+...|.. +..+....-..+| .++-||++|+||||.+
T Consensus 104 ~~~~tfd~fi~-g-~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 104 NPKYTFDNFVV-G-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCCccccccc-C-CcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 35799998442 2 224445543 3444443212244 4778999999999987
No 216
>PRK12377 putative replication protein; Provisional
Probab=86.25 E-value=0.53 Score=51.34 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=32.9
Q ss_pred eeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 48 SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 48 ~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..+||...... ..+..++. .+..++..+..+. ..++-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~-~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQN-DGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCC-hhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 34788754322 22444554 3566777776654 45778999999999987
No 217
>PRK06526 transposase; Provisional
Probab=86.21 E-value=0.47 Score=52.02 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.4
Q ss_pred EEEeccCCCCcceecc
Q 001669 85 VLAYGQTGSGKTYTMG 100 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm~ 100 (1034)
|+.||++|+||||...
T Consensus 101 lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 101 VVFLGPPGTGKTHLAI 116 (254)
T ss_pred EEEEeCCCCchHHHHH
Confidence 7889999999999983
No 218
>PRK08727 hypothetical protein; Validated
Probab=85.95 E-value=0.38 Score=52.06 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=26.6
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCC-ceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~-n~ti~ayG~tgSGKT~Tm 99 (1034)
..|+||..+.+. + + .+.. +.++ ..|. .-.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~~~-~-n--~~~~-~~~~----~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAAP-D-G--LLAQ-LQAL----AAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCCc-H-H--HHHH-HHHH----HhccCCCeEEEECCCCCCHHHHH
Confidence 458999976422 2 2 2221 1222 2233 245899999999999987
No 219
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.87 E-value=78 Score=38.22 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=35.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001669 599 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAL 670 (1034)
Q Consensus 599 ~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~ 670 (1034)
-+.|.+...|++...-+..++++.+.++..+ ..|--++..-...-.-+++.|+.+...+..++..+..+
T Consensus 192 alEkeq~e~E~K~R~se~l~qevn~~kv~e~---~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~ 260 (861)
T KOG1899|consen 192 ALEKEQNETEKKLRLSENLMQEVNQSKVGEV---VQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRT 260 (861)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHH
Confidence 4555666667777777777777765555433 11111221111222334555555555555555555443
No 220
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.67 E-value=44 Score=36.47 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 643 KASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEA 685 (1034)
Q Consensus 643 k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~ 685 (1034)
....+.++.+|..+..+++.+...++..+..-+.-+.+...++
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666665554444444444443
No 221
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.66 E-value=0.47 Score=48.44 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=22.1
Q ss_pred hhhhhHHHhhcC-CceeEEEeccCCCCcceec
Q 001669 69 CIAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 69 ~~~plv~~~l~G-~n~ti~ayG~tgSGKT~Tm 99 (1034)
++..+++.+-.+ ....++..|+||||||++|
T Consensus 11 ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~ 42 (184)
T PF04851_consen 11 AIARIINSLENKKEERRVLLNAPTGSGKTIIA 42 (184)
T ss_dssp HHHHHHHHHHTTSGCSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCcChhh
Confidence 344555555554 4566677899999999999
No 222
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.52 E-value=67 Score=35.93 Aligned_cols=61 Identities=26% Similarity=0.273 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 636 AEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 700 (1034)
Q Consensus 636 ~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 700 (1034)
+.........+..+++.-..+..+...+|..|.+++-. ++++.+...+.+..|...|..-|
T Consensus 208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd----lQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD----LQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444555666666666666666677777664433 44445555555555555555433
No 223
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.49 E-value=0.76 Score=53.75 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=19.7
Q ss_pred hHHHhh-cCCceeEEEeccCCCCcceec
Q 001669 73 LVDGLF-QGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l-~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+..++ .+....++-||++|+|||+++
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 333344 345567899999999999987
No 224
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.47 E-value=65 Score=35.75 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001669 538 AELEDEKRTVQKERDHLL 555 (1034)
Q Consensus 538 ~eLe~ei~~l~~e~~~L~ 555 (1034)
.+|..++..+-..+|.++
T Consensus 30 ~El~~~~~~~~ekRdeln 47 (294)
T COG1340 30 DELRKEASELAEKRDELN 47 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 225
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.22 E-value=0.5 Score=50.52 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=30.5
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..|+||.... . . +..++.. +..++ ..+....|+-||++|+||||..
T Consensus 10 ~~~~~~~~~~-~-~-~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-G-NAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-C-cHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHH
Confidence 4588888773 2 2 3444443 22222 2566778999999999999987
No 226
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.09 E-value=0.54 Score=50.52 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=30.6
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..|+||.+++. . +..++. .+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~--~-~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--E-NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--C-cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 46899998842 2 233332 34444432 234557899999999999976
No 227
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.06 E-value=0.52 Score=56.15 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=30.6
Q ss_pred eeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 48 SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 48 ~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|+||..+. ..+ +...|. .+..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~-g~~-n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVI-GSS-NEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccC-CCc-HHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 599999774 323 455553 34444432211245 4788999999999987
No 228
>PRK08116 hypothetical protein; Validated
Probab=84.81 E-value=0.52 Score=52.13 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=33.6
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhc--CCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~--G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..++||.... . ..+...|. .+...++.+.. +.+..++-||++|+||||.+
T Consensus 80 ~~~tFdnf~~-~-~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFLF-D-KGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred HhcchhcccC-C-hHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 3578887552 2 22444554 45666666643 34556899999999999987
No 229
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.72 E-value=1.5e+02 Score=39.36 Aligned_cols=27 Identities=4% Similarity=0.110 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 531 QHFGKKIAELEDEKRTVQKERDHLLTE 557 (1034)
Q Consensus 531 ~~~e~ki~eLe~ei~~l~~e~~~L~~e 557 (1034)
..+++++.....++.+++++.......
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~ 131 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDR 131 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555555555554444333
No 230
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.64 E-value=0.63 Score=45.05 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=20.1
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..+...+.......|+.+|++|+|||+++
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 34444444434557888999999999866
No 231
>PF13245 AAA_19: Part of AAA domain
Probab=84.57 E-value=0.48 Score=41.64 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.1
Q ss_pred HHHhhcCCceeEEEeccCCCCcceec
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|...+. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 344445 3333445899999999998
No 232
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.47 E-value=0.65 Score=49.91 Aligned_cols=43 Identities=33% Similarity=0.529 Sum_probs=31.5
Q ss_pred hhhhHHHhhcCCceeEEEeccCCCCcceecc--CCCCCCCCcccH
Q 001669 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGFKDGYQTGII 112 (1034)
Q Consensus 70 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~--g~~~~~~~~Gli 112 (1034)
+.|++.++.-...+.|+..|+|||||++||- -++.+...+|=|
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCce
Confidence 4677788877888889999999999999982 223344455543
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.18 E-value=0.78 Score=49.91 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=31.6
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
...+||.... ....+..++.. +..+++.+..|++ .++-||++|+||||.+
T Consensus 67 ~~~tFdnf~~-~~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRV-ECEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccC-CCchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHH
Confidence 4578887543 22234445544 4445555544433 6788999999999987
No 234
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.00 E-value=22 Score=40.21 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 639 FRQWKASREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 639 ~r~~k~~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
+.....++..+...++.+..-...++.+|+
T Consensus 104 ~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 104 LQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444544444444555554
No 235
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.93 E-value=85 Score=35.79 Aligned_cols=13 Identities=15% Similarity=-0.041 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 001669 534 GKKIAELEDEKRT 546 (1034)
Q Consensus 534 e~ki~eLe~ei~~ 546 (1034)
+--.++|..-|.+
T Consensus 74 ~~~c~EL~~~I~e 86 (325)
T PF08317_consen 74 QFSCRELKKYISE 86 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 236
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.77 E-value=62 Score=34.14 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH
Q 001669 646 REKELLQLRKEGRRNEYERHKL 667 (1034)
Q Consensus 646 ~eke~~qLk~e~rk~e~el~~L 667 (1034)
+++.+..|...+.+++.++..+
T Consensus 148 LEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 237
>PRK11281 hypothetical protein; Provisional
Probab=83.61 E-value=1.7e+02 Score=39.03 Aligned_cols=57 Identities=11% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 001669 531 QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQIL 588 (1034)
Q Consensus 531 ~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~ 588 (1034)
.++++++.+++.+..+.+.++..+.+++..... --+.++..-.+...++++.+.++.
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT-~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQT-QPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHHHHHHHHh
Confidence 348888888888888888888888777777522 222233332334555666555543
No 238
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.48 E-value=0.84 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.0
Q ss_pred hHHHhhc-CCceeEEEeccCCCCcceec
Q 001669 73 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l~-G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+..++. +...+++.||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3334443 45668999999999999976
No 239
>PLN02939 transferase, transferring glycosyl groups
Probab=83.40 E-value=1.6e+02 Score=38.45 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh---hhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 795 ARISSLENMLSISSNSLVAMASQLSEAEERDR---LFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEM 871 (1034)
Q Consensus 795 ~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~---~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~ 871 (1034)
+.+.-|+++..-++..+.+|++.+..+++... .+.-...|+.+.+|..--..+....+.++-.-.+..++..++..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (977)
T PLN02939 257 ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKL 336 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45555666666666666666666655543321 222235777777776655544444444444333444444455555
Q ss_pred HHHHH
Q 001669 872 KEQLK 876 (1034)
Q Consensus 872 ~~~~~ 876 (1034)
+..+.
T Consensus 337 ~~~~~ 341 (977)
T PLN02939 337 EASLK 341 (977)
T ss_pred HHHHH
Confidence 44444
No 240
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.33 E-value=34 Score=32.74 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 794 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKE 873 (1034)
Q Consensus 794 ~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~ 873 (1034)
..++..|+..+...--++..++.+|.+.+.-. +.|..+.++-..-+..=+.+.. . +++.-+.++++
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al---------~Ele~l~eD~~vYk~VG~llvk--~---~k~~~~~eL~e 77 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKAL---------EELEKLDEDAPVYKKVGNLLVK--V---SKEEAVDELEE 77 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhcCCcccHHHHHhhhHHhh--h---hHHHHHHHHHH
Confidence 35666667777666666666776666664421 1233333332211111111111 1 33445778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001669 874 QLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS 912 (1034)
Q Consensus 874 ~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~ 912 (1034)
+.+.|..++..++..-+.+..++++.+..+..++.....
T Consensus 78 r~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~ 116 (119)
T COG1382 78 RKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAAN 116 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 888888888889988888999999999999888877543
No 241
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=83.26 E-value=2.9 Score=45.36 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=32.5
Q ss_pred eCCHHHHHHHHHHcccccccccCCCCCCCCCceEEEEEEEEeeeccCCCcCCCCCCCCCCCccEEEeEEeEeeCCCCcc
Q 001669 196 VSSLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLSPVSLGDSSPNESMNEEYLCAKLHLVDLAGSER 274 (1034)
Q Consensus 196 v~s~~e~~~~l~~g~~~R~~~st~~n~~SSRSH~if~i~v~q~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr 274 (1034)
+.+++++..++..+... ..++ ...-|.-++.|.|.... +-.|+||||+|-.+
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~---------------------~~~ltLIDlPGl~~ 137 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPH---------------------VLNLTLIDLPGITK 137 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCC---------------------CCceEEEeCCCccc
Confidence 46788888888765432 2121 12345667888875311 12499999999964
No 242
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.14 E-value=1.4e+02 Score=37.64 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHH
Q 001669 643 KASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEK 722 (1034)
Q Consensus 643 k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~ 722 (1034)
-.....++.+|+.++..+...+..++..+..+...++..+..+...+..+...... ..+
T Consensus 361 y~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re---------------------~qe 419 (717)
T PF09730_consen 361 YKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRE---------------------DQE 419 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------------hHH
Confidence 33455677777777777777777777777777766666666666544444332211 111
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 723 SFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQ 764 (1034)
Q Consensus 723 ~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~~ 764 (1034)
++.. +..++-.+. ...+....+..-++.-.....+|..|-.
T Consensus 420 ri~~-LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYH 461 (717)
T PF09730_consen 420 RISE-LEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYH 461 (717)
T ss_pred HHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 222333333 3577777777777778888888887764
No 243
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.01 E-value=1e+02 Score=36.09 Aligned_cols=29 Identities=24% Similarity=0.141 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001669 641 QWKASREKELLQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 641 ~~k~~~eke~~qLk~e~rk~e~el~~Lq~ 669 (1034)
.....+..++..++.+......++..++.
T Consensus 137 ~~~~~~~~~~~~l~~~i~~~~~~i~~~~~ 165 (423)
T TIGR01843 137 SRKSTLRAQLELILAQIKQLEAELAGLQA 165 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.29 E-value=23 Score=42.69 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=15.6
Q ss_pred ccHhHHHHHHHHHHHhcccCccEEEEEeee
Q 001669 110 GIIPLVMNVLFSKIETLKDQTEFQLHVSFI 139 (1034)
Q Consensus 110 Glipr~~~~LF~~i~~~~~~~~~~v~vS~~ 139 (1034)
|.|.++...|=+.+....-.++..|+=+|.
T Consensus 164 ~av~~~~reIee~L~~agldyDl~vr~~~g 193 (652)
T COG2433 164 GAVKRVVREIEEKLDEAGLDYDLEVRESYG 193 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeccC
Confidence 666666666666665533333333333333
No 245
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=82.26 E-value=9.7 Score=44.77 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 860 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARS 910 (1034)
Q Consensus 860 ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~ 910 (1034)
.+.+.+..+.+++++++.|...++.+...+.++++++++.+..+..|..+.
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666666655555455666667777777777776666665
No 246
>PRK08181 transposase; Validated
Probab=82.20 E-value=1.1 Score=49.60 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=16.0
Q ss_pred cCCceeEEEeccCCCCcceec
Q 001669 79 QGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|.| |+-||++|+||||-.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa 123 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLA 123 (269)
T ss_pred cCce--EEEEecCCCcHHHHH
Confidence 4554 788999999999987
No 247
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.15 E-value=27 Score=39.63 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 001669 543 EKRTVQKERDH 553 (1034)
Q Consensus 543 ei~~l~~e~~~ 553 (1034)
++..+..|++.
T Consensus 17 ~~~~~~~E~~~ 27 (314)
T PF04111_consen 17 QLEQAEKERDT 27 (314)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 248
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=81.91 E-value=0.85 Score=52.41 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=23.2
Q ss_pred hhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..|.+..++.--.+.|+..|+||||||+||
T Consensus 110 ~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 110 LPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 345566666544677899999999999998
No 249
>PF15294 Leu_zip: Leucine zipper
Probab=81.81 E-value=47 Score=36.59 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001669 675 KLVLQRKTEEAAMATKRL 692 (1034)
Q Consensus 675 ~~vlkrk~eE~~a~~k~L 692 (1034)
+.++..|..++.+.+++|
T Consensus 259 k~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 259 KEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHHhccHHHHHHHHHh
Confidence 344666666666555554
No 250
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=81.74 E-value=76 Score=33.66 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 579 KLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKEL 650 (1034)
Q Consensus 579 kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~ 650 (1034)
.+.+.+..+..|+..-.....+...+...+..+..|+.++..+...+....++++.. |=..+..++++.
T Consensus 55 qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~q---fl~EK~~LEke~ 123 (206)
T PF14988_consen 55 QLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQ---FLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 444444444466677777788888899999999999999888888887766555543 333344444443
No 251
>PRK10436 hypothetical protein; Provisional
Probab=81.27 E-value=0.71 Score=54.93 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=22.6
Q ss_pred hHHHhhcCCceeEEEeccCCCCcceec
Q 001669 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+..++..-++.|+..|+||||||+||
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 344566677889999999999999999
No 252
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=80.97 E-value=1.6e+02 Score=36.84 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001669 854 LADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASG 913 (1034)
Q Consensus 854 ~~~~r~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~ 913 (1034)
+.+....+..+..++.....++.++...+..+..+.+.+.....-.++.+..|.+.....
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555556666666666666666666666666666666566666666666555444
No 253
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.81 E-value=81 Score=36.75 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=19.8
Q ss_pred EEeCCHHHHHHHHHHcccccccccCCCCC-CCCCceEEEEEEEEee
Q 001669 194 VSVSSLKEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 238 (1034)
Q Consensus 194 ~~v~s~~e~~~~l~~g~~~R~~~st~~n~-~SSRSH~if~i~v~q~ 238 (1034)
+...+..++..++..-+. ..+|. .+---|++|...|+-.
T Consensus 120 IkFr~q~da~~Fy~efNG------k~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFNG------KQFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcCC------CcCCCCCccceeEEEEEEEEEE
Confidence 456666677766654221 11221 1123478877766543
No 254
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=80.52 E-value=25 Score=34.52 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCC
Q 001669 847 LQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDT 926 (1034)
Q Consensus 847 l~~l~~~~~~~r~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~ 926 (1034)
|.+|..+-..+..+-+.-+.+=.|++.++..|.+..+..+.-++.|.+.++..|-++.+--...........+.....+.
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~~~~~~~ 85 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLNQSQKKK 85 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 34444444444334444455667888999999999999999999999999999998876655544422211111111111
Q ss_pred CCCCCCCCcccccccccccCccCCCcchhhHHhhhccc
Q 001669 927 SGPPSPMSVPAQKQLKYTPGIANGSIRESAAFINQNRK 964 (1034)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1034)
+........+..+...=.|++.+...+.+-.|+++..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~L~~~l~ 123 (134)
T PF08232_consen 86 SSSSDEELEEDSDEESSSPEIDESKWKKSRQLLRKYLQ 123 (134)
T ss_pred cccccccccCCcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 11111111223333333455666667788888887543
No 255
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=80.49 E-value=0.51 Score=51.85 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=13.9
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
....||+|||||++.+
T Consensus 89 I~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567999999999987
No 256
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.22 E-value=0.85 Score=54.79 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=22.4
Q ss_pred hHHHhhcCCceeEEEeccCCCCcceec
Q 001669 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+..++..-++.|+..|+||||||+||
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 445566777788999999999999999
No 257
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.13 E-value=1.3e+02 Score=35.28 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001669 678 LQRKTEEAAMATKRLKELLE 697 (1034)
Q Consensus 678 lkrk~eE~~a~~k~Lke~le 697 (1034)
++.++.++.+....++..+.
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 258
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=79.96 E-value=0.76 Score=56.38 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.0
Q ss_pred hHHHhhcCCceeEEEeccCCCCcceec
Q 001669 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+..++..-++.|+..|+||||||+||
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455666777889999999999999998
No 259
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=79.73 E-value=1.4e+02 Score=35.47 Aligned_cols=93 Identities=9% Similarity=0.102 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---ChhhhHHH
Q 001669 500 MDKELNELNRRLEEKESEMKLVGGS----DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLASN---SDGQTQKL 572 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~l~~~----~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~---~~~~~~kl 572 (1034)
++.++.++..++...|..+..+... +..........++.++..++...+.++..+.......... ........
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 5556666677777776666665431 1110011123456677777666666655544433321110 00011122
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001669 573 QDVHAHKLKSLEAQILDLKK 592 (1034)
Q Consensus 573 ~~~~e~kl~eLe~ql~dL~~ 592 (1034)
-..+..++.+++.++.+|..
T Consensus 256 i~~l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23456677777777776653
No 260
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=79.58 E-value=0.74 Score=50.89 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred hhHHHhhcCC---ceeEEEeccCCCCcceec
Q 001669 72 PLVDGLFQGY---NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 72 plv~~~l~G~---n~ti~ayG~tgSGKT~Tm 99 (1034)
+.+..++... .+.|+..|+||||||++|
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH
Confidence 3344444433 556667799999999998
No 261
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.15 E-value=0.65 Score=44.78 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.0
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
+.+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457889999999999987
No 262
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.11 E-value=0.78 Score=48.30 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=15.9
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
++.|+..|+||||||+++
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357888999999999998
No 263
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=79.04 E-value=1 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.6
Q ss_pred HhhcCCceeEEEeccCCCCcceec
Q 001669 76 GLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 76 ~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++.--++.|+..|+||||||+||
T Consensus 128 ~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 128 DAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHhccCCEEEEECCCCCCHHHHH
Confidence 344445788999999999999998
No 264
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=78.74 E-value=1 Score=51.99 Aligned_cols=19 Identities=37% Similarity=0.407 Sum_probs=16.7
Q ss_pred CceeEEEeccCCCCcceec
Q 001669 81 YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 81 ~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++.|+..|+||||||+||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567888999999999998
No 265
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=78.29 E-value=1.6 Score=51.99 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=31.7
Q ss_pred CceeeeceeeCCCCCChHHHHHHhhhhhHHHh--hcC--CceeEEEeccCCCCcceec
Q 001669 46 THSFTFDHVYGSTGSPSSAMFDECIAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 46 ~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~--l~G--~n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+||..+. ..+ +...|. .+..+.... ..| ||. +|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~-g~~-N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLV-TPE-NDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred Cccccccceee-CCc-HHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 35699999774 223 444443 345554433 223 454 677999999999987
No 266
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.08 E-value=91 Score=33.65 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 537 IAELEDEKRTVQKERDHLLTEIENL 561 (1034)
Q Consensus 537 i~eLe~ei~~l~~e~~~L~~el~~~ 561 (1034)
|+++......++.-...+..+++.+
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~ 27 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESL 27 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554
No 267
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=78.06 E-value=2.4 Score=42.64 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=18.7
Q ss_pred HHHhhcCCceeEEEeccCCCCcceec
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..+..|.| ++..|+||||||+.+
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHH
Confidence 344556766 678899999999987
No 268
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.77 E-value=30 Score=36.61 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 001669 578 HKLKSLEAQILDLK 591 (1034)
Q Consensus 578 ~kl~eLe~ql~dL~ 591 (1034)
.++.+++.|+.+|+
T Consensus 93 ~rlp~le~el~~l~ 106 (206)
T PRK10884 93 TRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555666655554
No 269
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.73 E-value=0.89 Score=43.47 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.7
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 577899999999998
No 270
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=77.68 E-value=1.8e+02 Score=35.51 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=8.0
Q ss_pred cCCCcchhhHHhhh
Q 001669 948 ANGSIRESAAFINQ 961 (1034)
Q Consensus 948 ~~~~~~~~~~~~~~ 961 (1034)
+.+.|+.+...+|.
T Consensus 469 ~~~r~~~a~~~iD~ 482 (511)
T PF09787_consen 469 VARRVKRAASVIDS 482 (511)
T ss_pred HHHHHHHHHHHHhH
Confidence 44555666656665
No 271
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=77.58 E-value=3.7 Score=51.73 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=17.1
Q ss_pred CCceeEEEeccCCCCcceec
Q 001669 80 GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 80 G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|-+.+||.||++|+|||.|+
T Consensus 779 gpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567889999999999997
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=77.43 E-value=1.4 Score=50.13 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=22.6
Q ss_pred hhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+...|+.+-.+. -.|+-||++|+||||.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 445777776554 56889999999999987
No 273
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.21 E-value=60 Score=38.29 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 865 DIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAIT 906 (1034)
Q Consensus 865 ~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l 906 (1034)
...|..+++.-.++++.+++++...-++..++.+.++.++.|
T Consensus 260 ~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 260 DEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333455555555555555555555555555555555555544
No 274
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.99 E-value=23 Score=37.06 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001669 795 ARISSLENMLSISSNSLVAMASQLSEAEER 824 (1034)
Q Consensus 795 ~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~ 824 (1034)
..+..++.+++.+.+....+..++.++...
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~ 103 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDE 103 (194)
T ss_dssp ------------------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 455555556666666666666666666544
No 275
>PRK08939 primosomal protein DnaI; Reviewed
Probab=76.65 E-value=1.5 Score=49.37 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=31.2
Q ss_pred eeeceeeCCCCCChHHHHHHhhhhhHHHhhcC-CceeEEEeccCCCCcceecc
Q 001669 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 100 (1034)
Q Consensus 49 f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G-~n~ti~ayG~tgSGKT~Tm~ 100 (1034)
.+||.+-. .......++.. +...++....| ....|+-||++|+||||.+.
T Consensus 124 atf~~~~~-~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDL-DDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcC-CChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 46665432 22224455553 35566665543 23468999999999999983
No 276
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=76.51 E-value=1e+02 Score=32.07 Aligned_cols=24 Identities=29% Similarity=0.291 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 409 QVLKERIAWLEAANEDLCRELHEY 432 (1034)
Q Consensus 409 ~~L~e~i~~Le~en~~L~~el~~~ 432 (1034)
+.+..+..+++.....+..+|++.
T Consensus 49 Kv~enr~~kdEE~~e~~e~qLkEA 72 (205)
T KOG1003|consen 49 KVIENRAQKLEEKMEAQEAQLKEA 72 (205)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 277
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=76.50 E-value=1.3 Score=46.48 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=19.8
Q ss_pred hHHHhhcCCceeEEEeccCCCCcceec
Q 001669 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|..++...+..++..|+.||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 345555555555666899999999998
No 278
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=76.50 E-value=2e+02 Score=35.60 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccch---hh-cccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001669 795 ARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRW---NQ-LRSMADAKNLLQ-YMFNSLADARCQLWEKDIEIK 869 (1034)
Q Consensus 795 ~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~---~~-irsl~eak~~l~-~l~~~~~~~r~ql~e~~~~l~ 869 (1034)
.-...|+.........++.+..++..+....+.... ..| .. .++-...-.+|+ ++.+....++.+|.+.+..|.
T Consensus 521 e~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~e-ea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLN 599 (739)
T PF07111_consen 521 EVAQQLEQELQEKQESLAELEEQLEAARKSLQESTE-EAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLN 599 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555566666666665555433210000 000 01 111112222444 333444555667777777777
Q ss_pred HHHHHHHH
Q 001669 870 EMKEQLKE 877 (1034)
Q Consensus 870 e~~~~~~e 877 (1034)
++++.-.-
T Consensus 600 eARREHtK 607 (739)
T PF07111_consen 600 EARREHTK 607 (739)
T ss_pred HHHHHHHH
Confidence 76655543
No 279
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.33 E-value=1 Score=42.97 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.0
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45788999999999998
No 280
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=76.25 E-value=3.3 Score=44.70 Aligned_cols=47 Identities=26% Similarity=0.536 Sum_probs=30.9
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCce-eEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNA-TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~-ti~ayG~tgSGKT~Tm 99 (1034)
....+|...|-+ .+...+... ...|+.|..+ .|+.||..|+|||.++
T Consensus 22 ~~~~l~~L~Gie-~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 22 DPIRLDDLIGIE-RQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCCCHHHhcCHH-HHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 345677777633 333333333 3567788755 3677999999998877
No 281
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=76.18 E-value=1.4e+02 Score=33.70 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 535 KKIAELEDEKRTVQKERDHLLTEIE 559 (1034)
Q Consensus 535 ~ki~eLe~ei~~l~~e~~~L~~el~ 559 (1034)
+.+..++.....+..+++.+..++.
T Consensus 43 k~~~~~~Kk~~~l~kek~~l~~E~~ 67 (309)
T PF09728_consen 43 KQLKKLQKKQEQLQKEKDQLQSELS 67 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444554444444
No 282
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=76.00 E-value=2.2e+02 Score=35.68 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 852 NSLADARCQLWEKDIEIKEMKEQLKEL 878 (1034)
Q Consensus 852 ~~~~~~r~ql~e~~~~l~e~~~~~~el 878 (1034)
..+...+..+..-+.++.+++.++.++
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~ 592 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAEL 592 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554
No 283
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.87 E-value=2.1e+02 Score=35.44 Aligned_cols=316 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcC-CCCcccHHHHHHHh
Q 001669 385 MRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDG-SPCPLKSDGLKRSL 463 (1034)
Q Consensus 385 Lr~ql~~L~~eL~~~~~~~~~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l~~~~~~~~~~-~~l~~~i~eLe~~L 463 (1034)
+..-++.++.+... .......+......++.....+..++....+....+.......... ...+..+..++..+
T Consensus 5 ~qel~~~~~~e~~~-----~~~q~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rf 79 (916)
T KOG0249|consen 5 LQELLEKQQHEQAQ-----SKEQLAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRF 79 (916)
T ss_pred hHHHHHHHHHHHhh-----cccccCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHH
Q ss_pred hhhhcccccccccCCCCChhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 001669 464 NSIEQTDYQMGENITGDSREIDEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDE 543 (1034)
Q Consensus 464 ~~~~~~~~~~~e~~~~~~~~~ee~~~e~E~~~~q~~l~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~e 543 (1034)
......-. ....-..+|+.+|+.++..+.... .+...|+..
T Consensus 80 lnaqre~t---------------------------~~~d~ndklE~~Lankda~lrq~e------------ekn~slqer 120 (916)
T KOG0249|consen 80 LNAQREST---------------------------SIHDLNDKLENELANKDADLRQNE------------EKNRSLQER 120 (916)
T ss_pred HhccCCCC---------------------------CcccchHHHHHHHhCcchhhchhH------------HhhhhhhHH
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001669 544 KRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKA 623 (1034)
Q Consensus 544 i~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~ 623 (1034)
+.-.+.++..-.+ ...+ ..--.+|...+..+.+..+.+......-.+++..+.++.++++...+
T Consensus 121 LelaE~~l~qs~r-ae~l---------------peveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarq 184 (916)
T KOG0249|consen 121 LELAEPKLQQSLR-AETL---------------PEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQ 184 (916)
T ss_pred HHHhhHhhHhHHh-hhhh---------------hhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 624 QKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQ---RQKLVLQRKTEEAAMATKRLKELLESRK 700 (1034)
Q Consensus 624 ~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e---~q~~vlkrk~eE~~a~~k~Lke~le~~k 700 (1034)
.----..--+.=....-+|.+-.-+|..+-.....++..++..+..+++ ..+--|.+-++.+....+.|+.....+.
T Consensus 185 reemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 185 REKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKE 264 (916)
T ss_pred HHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q ss_pred hhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 701 SSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVL 762 (1034)
Q Consensus 701 ~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L 762 (1034)
...|+--.............. .+.-...+..-+.++....+.-++.+............+
T Consensus 265 ~~mrd~~~~~~e~~~~~~~~~--~k~S~~~rrp~~grL~~~rdep~kv~~l~~q~w~r~qq~ 324 (916)
T KOG0249|consen 265 QELRDHLRTYAERRRETETTN--YKTSGVRRRPRKGRLKALRDEPEKVQTLNEQEWARDQQA 324 (916)
T ss_pred hhhcchhhhhHHHHHhhcchh--hhhhhhhhhhhhhhHHHhhhchHHHHHHHHHHHHHHHHH
No 284
>PRK06921 hypothetical protein; Provisional
Probab=75.78 E-value=1.9 Score=47.61 Aligned_cols=50 Identities=26% Similarity=0.568 Sum_probs=28.9
Q ss_pred eeeeceeeCCCCCCh--HHHHHHhhhhhHHHhhc---CCceeEEEeccCCCCcceec
Q 001669 48 SFTFDHVYGSTGSPS--SAMFDECIAPLVDGLFQ---GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 48 ~f~FD~Vf~~~~~~q--~~v~~~~~~plv~~~l~---G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++||. |.+...++ ..+|. .+...++++-. +....|+-||++|+||||.+
T Consensus 80 ~~~F~n-f~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 80 KLTFKN-FKTEGKPQAIKDAYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred hhhhhc-CccCCccHHHHHHHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHH
Confidence 466775 33332221 22333 23445555532 23456788999999999987
No 285
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=75.78 E-value=2.2 Score=48.80 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=39.1
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhc----CCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQ----GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~----G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++.||++.+.--. ...+++.++-.++.+++. -.--.|+-||+.|+|||+..
T Consensus 110 ~~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 110 RTRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 35778888765443 467888888888888874 33456888999999999864
No 286
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.46 E-value=92 Score=34.06 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 001669 631 RIKQEAEQFRQWKASREKELLQLRKEGRRNEYE-RHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAV 709 (1034)
Q Consensus 631 kl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~e-l~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~ 709 (1034)
-|+.-++....-..+++.||..|+.++-+.+-+ |.+---+.|+|.+ .+|+...|+.||+..+.-|+
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLA-----LKEARkEIkQLkQvieTmrs-------- 138 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLA-----LKEARKEIKQLKQVIETMRS-------- 138 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh--------
Confidence 333333333344444566666666666554433 2222222222322 45777788888888886552
Q ss_pred ccCCcccccccHHHHHHHHH
Q 001669 710 TNGNLTNGQSNEKSFQRWLD 729 (1034)
Q Consensus 710 ~~~~~~~~~~~~~~~k~wl~ 729 (1034)
+...+++-+++++.
T Consensus 139 ------sL~ekDkGiQKYFv 152 (305)
T PF15290_consen 139 ------SLAEKDKGIQKYFV 152 (305)
T ss_pred ------hhchhhhhHHHHHh
Confidence 33345556666655
No 287
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.34 E-value=1.4 Score=48.55 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=20.0
Q ss_pred HHHhhcCCceeEEEeccCCCCcceec
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..++..-.+.|+..|+||||||+||
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 34455555667888899999999998
No 288
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=75.06 E-value=2 Score=47.45 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=23.5
Q ss_pred HHHHHhhhhhHHHhhcC-CceeEEEeccCCCCcceec
Q 001669 64 AMFDECIAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 64 ~v~~~~~~plv~~~l~G-~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++.+.+-.++.+.+.| .--..+-|||.|+|||.|.
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33344444445444444 4445778999999999997
No 289
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.84 E-value=1.1e+02 Score=31.61 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=34.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 631 RIKQEAEQFRQ-WKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAA 686 (1034)
Q Consensus 631 kl~~E~~~~r~-~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~ 686 (1034)
+|++++...+. .+..+.-++...+.+....+..+..+..+++.+-+-++..++.+.
T Consensus 95 ~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 95 ELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 345566667777777777777777777777766666666666543
No 290
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.69 E-value=88 Score=33.76 Aligned_cols=20 Identities=15% Similarity=0.146 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001669 619 QFIKAQKVQLQHRIKQEAEQ 638 (1034)
Q Consensus 619 ~~~K~~k~~l~rkl~~E~~~ 638 (1034)
..+|..+++..+.+..+...
T Consensus 45 ~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 45 LQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 291
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.57 E-value=1.5e+02 Score=33.28 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC
Q 001669 743 FDYEKQSQVRAALAEELAVLKQVDEFASKGLS 774 (1034)
Q Consensus 743 ~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~ 774 (1034)
..+..+.+.+..|..++.+|+.+++.......
T Consensus 219 vRLkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 219 VRLKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35677888899999999999988876554444
No 292
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=74.48 E-value=2.5 Score=46.40 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=29.5
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
++|.|..+-.++.. +..+|.. +..++..+-.|.| ++-||++|+||||-.
T Consensus 74 k~~~~~d~~~~~~~-~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa 122 (254)
T COG1484 74 KTFEEFDFEFQPGI-DKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLA 122 (254)
T ss_pred CCcccccccCCcch-hHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHH
Confidence 45554443333333 4555544 4556655554444 456999999999987
No 293
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.33 E-value=34 Score=35.85 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001669 576 HAHKLKSLEAQILDLK 591 (1034)
Q Consensus 576 ~e~kl~eLe~ql~dL~ 591 (1034)
....+..+..++.++.
T Consensus 72 le~~~~~l~~ELael~ 87 (194)
T PF08614_consen 72 LEQKLAKLQEELAELY 87 (194)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 3444555555544444
No 294
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.26 E-value=2.4 Score=47.84 Aligned_cols=88 Identities=23% Similarity=0.426 Sum_probs=51.6
Q ss_pred ceEEEEEeCCCCCccc-ccCCCceE--------EEeCCCCceeec------CceeeeceeeCCCCCChHHHHHHhhhhhH
Q 001669 10 CVKVAVHVRPLIGDER-AQGCKDCV--------AVVPGKPQVQIG------THSFTFDHVYGSTGSPSSAMFDECIAPLV 74 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~-~~~~~~~v--------~~~~~~~~v~~~------~~~f~FD~Vf~~~~~~q~~v~~~~~~plv 74 (1034)
.-+.+|++.|...++. ..|+..++ .+.|.+....+. .-.-+|+.|=| -..+-++|.+.+-.|+.
T Consensus 94 g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGG-L~~Qi~EirE~VELPL~ 172 (406)
T COG1222 94 GPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGG-LDEQIQEIREVVELPLK 172 (406)
T ss_pred CCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccC-HHHHHHHHHHHhccccc
Confidence 4567888888776653 23443332 233333221111 12345555544 22345788888888888
Q ss_pred H-Hhhc--CCc--eeEEEeccCCCCccee
Q 001669 75 D-GLFQ--GYN--ATVLAYGQTGSGKTYT 98 (1034)
Q Consensus 75 ~-~~l~--G~n--~ti~ayG~tgSGKT~T 98 (1034)
. .+|. |.. -.|+-||+.|+|||-.
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHH
Confidence 6 3454 553 4689999999999754
No 295
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=74.13 E-value=1.5 Score=46.61 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=21.2
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..+...+-.|.+.+|+.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444445677889999999999999987
No 296
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.08 E-value=1.1e+02 Score=31.59 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001669 503 ELNELNRRLEEKE 515 (1034)
Q Consensus 503 el~eL~~~L~~kE 515 (1034)
++.+++.++...+
T Consensus 82 e~~~~~~~l~~l~ 94 (191)
T PF04156_consen 82 ELSELQQQLQQLQ 94 (191)
T ss_pred hHHhHHHHHHHHH
Confidence 3333344444333
No 297
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=74.07 E-value=5.4 Score=45.71 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=26.4
Q ss_pred ec-eeeCCCCCChHHHHHHhhhhhHHHhhcC---CceeEEEeccCCCCcceec
Q 001669 51 FD-HVYGSTGSPSSAMFDECIAPLVDGLFQG---YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 51 FD-~Vf~~~~~~q~~v~~~~~~plv~~~l~G---~n~ti~ayG~tgSGKT~Tm 99 (1034)
|| .|||. ++.....|.-+- ....| .+..|+-.|++|||||+..
T Consensus 49 F~~~~~G~-----~~~i~~lv~~l~-~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 49 FDHDFFGM-----EEAIERFVNYFK-SAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred cchhccCc-----HHHHHHHHHHHH-HHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 45 78872 334444443333 33333 4567888999999998754
No 298
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.98 E-value=53 Score=34.80 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 001669 576 HAHKLKSLEAQI 587 (1034)
Q Consensus 576 ~e~kl~eLe~ql 587 (1034)
+++++.+++.++
T Consensus 98 le~el~~l~~~l 109 (206)
T PRK10884 98 LENQVKTLTDKL 109 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 299
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=73.86 E-value=2.2 Score=52.29 Aligned_cols=38 Identities=37% Similarity=0.649 Sum_probs=24.6
Q ss_pred ceeEEEeccCCCCcceec-----cCCCC--CCCCcccH----hHHHHHH
Q 001669 82 NATVLAYGQTGSGKTYTM-----GTGFK--DGYQTGII----PLVMNVL 119 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm-----~g~~~--~~~~~Gli----pr~~~~L 119 (1034)
|-.|+.+|+||||||+-+ -.||+ ...++|+| ||=+..|
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 456777899999999987 11232 33458887 5544444
No 300
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.64 E-value=1.2 Score=46.72 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.5
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
.|+-.|+||+|||+|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4778899999999998
No 301
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=73.54 E-value=2.4e+02 Score=35.02 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 838 RSMADAKNLLQYMFNSLADARCQLWEK 864 (1034)
Q Consensus 838 rsl~eak~~l~~l~~~~~~~r~ql~e~ 864 (1034)
.++..|+..++.-.+..+..|.++...
T Consensus 542 ~QL~~Ar~~lqes~eea~~lR~EL~~Q 568 (739)
T PF07111_consen 542 EQLEAARKSLQESTEEAAELRRELTQQ 568 (739)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666655544
No 302
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=73.20 E-value=2.1 Score=44.22 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.5
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
.-.|+-||++|+||||..
T Consensus 47 ~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLA 64 (178)
T ss_dssp --EEEEEESTTSSHHHHH
T ss_pred CeEEEEEhhHhHHHHHHH
Confidence 345888999999999987
No 303
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=73.18 E-value=1.4 Score=47.33 Aligned_cols=15 Identities=47% Similarity=0.846 Sum_probs=13.0
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999998
No 304
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=73.10 E-value=2.2e+02 Score=34.30 Aligned_cols=100 Identities=13% Similarity=0.220 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 569 TQKLQDVHAHKLKSLEAQILDLKKK----QENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKA 644 (1034)
Q Consensus 569 ~~kl~~~~e~kl~eLe~ql~dL~~k----~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~ 644 (1034)
...++.-|..++.+|-.++.....| ..+...|.+--...+.....+..++.........|+..|...-..+..+..
T Consensus 411 E~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs 490 (518)
T PF10212_consen 411 EQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLS 490 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4556677788888877775533211 112222222222233344445555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Q 001669 645 SREKELLQLRKEGRRNEYERHKLQ 668 (1034)
Q Consensus 645 ~~eke~~qLk~e~rk~e~el~~Lq 668 (1034)
.+-..++.|..++.+..-+|..|.
T Consensus 491 ~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 491 MMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555554443
No 305
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=73.00 E-value=2 Score=47.77 Aligned_cols=27 Identities=44% Similarity=0.730 Sum_probs=21.6
Q ss_pred hhHHHhhcCC---ceeEEEeccCCCCcceec
Q 001669 72 PLVDGLFQGY---NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 72 plv~~~l~G~---n~ti~ayG~tgSGKT~Tm 99 (1034)
|++...+.|. -.|||+ |+||||||+.|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 6677777776 357776 99999999988
No 306
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=72.90 E-value=1.8e+02 Score=34.62 Aligned_cols=11 Identities=18% Similarity=0.142 Sum_probs=4.4
Q ss_pred hhHHHHHHHHH
Q 001669 659 RNEYERHKLQA 669 (1034)
Q Consensus 659 k~e~el~~Lq~ 669 (1034)
....|.+.|+.
T Consensus 272 ql~aE~~EleD 282 (596)
T KOG4360|consen 272 QLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 307
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=72.52 E-value=1.4 Score=45.13 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=16.3
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..+++....|...+|+.+|.+|+|||+.+
T Consensus 13 ~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 13 RDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 34444344677788999999999999986
No 308
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.49 E-value=99 Score=32.34 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 001669 604 KQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALN 671 (1034)
Q Consensus 604 k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~ 671 (1034)
..+++..+..|+..|-+++.+. ..+...+....+++.+|+........++..+..++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~-----------~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQA-----------AKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443333 33333344445677777766666666666655543
No 309
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=71.84 E-value=1.4 Score=51.65 Aligned_cols=51 Identities=29% Similarity=0.476 Sum_probs=31.5
Q ss_pred eeeeceeeCCCCCChHHHHHHhhhhhHH-Hhhc--C--CceeEEEeccCCCCcceec
Q 001669 48 SFTFDHVYGSTGSPSSAMFDECIAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 48 ~f~FD~Vf~~~~~~q~~v~~~~~~plv~-~~l~--G--~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++||.|.|-. ..-..+.+.+..|+.. .+|. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~-~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLE-EQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 46677766633 2234555555555554 2333 2 2456899999999999875
No 310
>PF13479 AAA_24: AAA domain
Probab=71.57 E-value=1.7 Score=46.21 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.2
Q ss_pred ceeEEEeccCCCCcceecc
Q 001669 82 NATVLAYGQTGSGKTYTMG 100 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm~ 100 (1034)
+..|+.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999999873
No 311
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=71.55 E-value=1.8 Score=48.77 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=20.4
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..++..++.+ ...|+..|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3445555554 456778899999999998
No 312
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=71.50 E-value=1.5 Score=42.17 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.5
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
|+-||++|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999976
No 313
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=71.45 E-value=1.6 Score=41.51 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
+|+..|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 314
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=71.18 E-value=8.2 Score=46.82 Aligned_cols=67 Identities=13% Similarity=0.305 Sum_probs=42.5
Q ss_pred eceeeCCCCCChHHHHHHhhhhhHHHh--hcCCceeEEEeccCCCCcce---------------eccC----CCCCCCCc
Q 001669 51 FDHVYGSTGSPSSAMFDECIAPLVDGL--FQGYNATVLAYGQTGSGKTY---------------TMGT----GFKDGYQT 109 (1034)
Q Consensus 51 FD~Vf~~~~~~q~~v~~~~~~plv~~~--l~G~n~ti~ayG~tgSGKT~---------------Tm~g----~~~~~~~~ 109 (1034)
|+.+|| .+++-+.++..+...+ +..-...++-.||+|+|||. ++-| ++-..+..
T Consensus 75 F~d~yG-----lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 75 FEEFYG-----MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPL 149 (644)
T ss_pred hhcccC-----cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCC
Confidence 666775 3556666666665444 34456678889999999994 4434 22234456
Q ss_pred ccH-hHHHHHHHHH
Q 001669 110 GII-PLVMNVLFSK 122 (1034)
Q Consensus 110 Gli-pr~~~~LF~~ 122 (1034)
||| |.-...+|..
T Consensus 150 ~L~p~~~~~~~le~ 163 (644)
T PRK15455 150 GLFDPDEDGPILEE 163 (644)
T ss_pred CCCChhhhHHHHHH
Confidence 888 5556666643
No 315
>PF12846 AAA_10: AAA-like domain
Probab=71.16 E-value=1.6 Score=48.57 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=15.8
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
|..++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456788999999999998
No 316
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=70.55 E-value=2.3 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.4
Q ss_pred cCC-ceeEEEeccCCCCcceec
Q 001669 79 QGY-NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 79 ~G~-n~ti~ayG~tgSGKT~Tm 99 (1034)
.|. ...+|-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 456666999999999987
No 317
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.94 E-value=2.3e+02 Score=33.31 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 500 MDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIEN 560 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~ 560 (1034)
..+-...+..+++.+..+...+... . ..-..+.++|..|+..-++++.+...+..-...
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~e~-i-~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~ 320 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLYEK-I-QEAMKISQKIKTLREKWRALKSDSNKYENYVNA 320 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444455555555544333333210 0 002234556666666666666655554443333
No 318
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=69.76 E-value=1.5 Score=50.92 Aligned_cols=52 Identities=27% Similarity=0.469 Sum_probs=30.8
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHH-hhc--CC--ceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDG-LFQ--GY--NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~-~l~--G~--n~ti~ayG~tgSGKT~Tm 99 (1034)
..++||.|.|-. ..-+.+.+.+..|+... .+. |. ...|+-||++|+|||++.
T Consensus 117 p~~~~~di~Gl~-~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 117 PNVSYEDIGGLE-EQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCCHHHhCChH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 356777777633 22344444444444432 222 22 445899999999999876
No 319
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=69.72 E-value=2 Score=48.75 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=19.4
Q ss_pred hhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 72 PLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 72 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++..++.+. ..|+..|+||||||++|
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4555555553 55666799999999887
No 320
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.97 E-value=72 Score=30.09 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 794 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKE 873 (1034)
Q Consensus 794 ~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~ 873 (1034)
..++..++..+..+..++..+..++.+.+.-.. .+..+.++....+-.=..+.. ... ..-+.++++
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~---------eL~~l~~d~~vyk~VG~vlv~--~~~---~e~~~~l~~ 74 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALE---------ELERLPDDTPVYKSVGNLLVK--TDK---EEAIQELKE 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHcCCCcchhHHHhchhhhe--ecH---HHHHHHHHH
Confidence 345555666666666666666666665543221 122222222211111111111 122 222455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 874 QLKELVGLLRQSEVRRKEVEEELKLREQAVAITL 907 (1034)
Q Consensus 874 ~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~ 907 (1034)
+++.+...+..++.....+.+++.+.+..+..++
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666677777777777777777777666554
No 321
>PRK09343 prefoldin subunit beta; Provisional
Probab=68.89 E-value=1e+02 Score=29.66 Aligned_cols=45 Identities=27% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001669 868 IKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSAS 912 (1034)
Q Consensus 868 l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~ 912 (1034)
..+++++++-+...+..++.....+.+.+++.+..+..++.....
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 556666777777788888888888999999999988888877543
No 322
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=68.46 E-value=2.7 Score=48.02 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=19.1
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..++..++.+. ..|+..|+||||||++|
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 34444444433 34667799999999998
No 323
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=68.31 E-value=2.6 Score=47.42 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=43.7
Q ss_pred hhHHHhhcCCceeEEEeccCCCCcceecc--CCCCCCCCcc----------------------------cHhHHHHHHHH
Q 001669 72 PLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGFKDGYQTG----------------------------IIPLVMNVLFS 121 (1034)
Q Consensus 72 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~--g~~~~~~~~G----------------------------lipr~~~~LF~ 121 (1034)
.++..+..+. |.|+..|.||||||+++- -.+-+..++. -=--.+.+|..
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvk 242 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVK 242 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHHH
Confidence 3444444454 778889999999999971 1111111121 11234566655
Q ss_pred HHHhcccCccEEEEEeeeeechhhhhhcCCCC
Q 001669 122 KIETLKDQTEFQLHVSFIEILKEEVRDLLDPP 153 (1034)
Q Consensus 122 ~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 153 (1034)
..-....+ ++=+-||+..+.+|||..-
T Consensus 243 n~LRmRPD-----RIiVGEVRG~Ea~dLL~Am 269 (355)
T COG4962 243 NALRMRPD-----RIIVGEVRGVEALDLLQAM 269 (355)
T ss_pred HHhhcCcc-----ceEEEEecCccHHHHHHHh
Confidence 43332221 2335699999999999754
No 324
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=68.25 E-value=2.3 Score=45.11 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.8
Q ss_pred HHHhhcCCceeEEEeccCCCCcceec
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|..++..-. ..+..||.|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 344443333 4566899999999988
No 325
>PRK09183 transposase/IS protein; Provisional
Probab=68.07 E-value=3.5 Score=45.39 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.3
Q ss_pred cCCceeEEEeccCCCCcceec
Q 001669 79 QGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|.| |+-||++|+||||.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa 119 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLA 119 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHH
Confidence 4554 567899999999987
No 326
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=68.06 E-value=4.8 Score=47.64 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=28.3
Q ss_pred eeeceeeCCCCCChHHHHHHhhhhhHHH-hhc--CC--ceeEEEeccCCCCcceec
Q 001669 49 FTFDHVYGSTGSPSSAMFDECIAPLVDG-LFQ--GY--NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 49 f~FD~Vf~~~~~~q~~v~~~~~~plv~~-~l~--G~--n~ti~ayG~tgSGKT~Tm 99 (1034)
-+|+.|.|-. ..-..+.+.+..|+... ++. |. ...|+-||++|+|||++.
T Consensus 180 ~~~~DIgGl~-~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 180 ESYADIGGLE-QQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCHHHhcCHH-HHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 4556665422 22344554444455432 222 22 235788999999999876
No 327
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=67.90 E-value=2.9 Score=43.39 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=19.0
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+++..++.. ...|+-.|+||||||++|
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 3445545543 334566799999999987
No 328
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.89 E-value=1.2e+02 Score=33.29 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.4
Q ss_pred HhhcCCceeEEEeccCCCCcceec
Q 001669 76 GLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 76 ~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
++-+||.-.|+|.|.||-|||+.|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 456899999999999999999876
No 329
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=67.87 E-value=3.4 Score=47.04 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=16.7
Q ss_pred cCCceeEEEeccCCCCcceec
Q 001669 79 QGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|....++-||++|+|||++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344345888999999999987
No 330
>PRK06547 hypothetical protein; Provisional
Probab=67.87 E-value=3.9 Score=42.03 Aligned_cols=30 Identities=40% Similarity=0.442 Sum_probs=21.1
Q ss_pred hhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..++..+..+.--.|+.+|++|||||+.-
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555555555566777799999999875
No 331
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.43 E-value=3.5e+02 Score=34.53 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q 001669 531 QHFGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKK-----------KQENQVQ 599 (1034)
Q Consensus 531 ~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~-----------k~~~~~~ 599 (1034)
.|++.-+++--.+++.+.+|.+....+.-.. .-....+++.+++.+|.++..++..+.. +......
T Consensus 48 ~hld~aLkec~~qlr~~ree~eq~i~~~~~~---~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~ 124 (769)
T PF05911_consen 48 SHLDGALKECMRQLRQVREEQEQKIHEAVAK---KSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAE 124 (769)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3555556666666666666665543333221 1234556666777777777777664433 3333445
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 600 LLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ 629 (1034)
Q Consensus 600 l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~ 629 (1034)
|...+...+..+..|...|+...+....|.
T Consensus 125 l~~~~~~~e~~~~~l~~~l~~~eken~~Lk 154 (769)
T PF05911_consen 125 LSEEKSQAEAEIEDLMARLESTEKENSSLK 154 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666666554
No 332
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.25 E-value=4.2 Score=47.36 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.3
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999998
No 333
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.15 E-value=2.1e+02 Score=33.32 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 600 LLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ 629 (1034)
Q Consensus 600 l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~ 629 (1034)
|.....+++..-..+...+......+.++.
T Consensus 195 L~q~lk~le~~~~~l~~~l~e~~~~~~~~~ 224 (447)
T KOG2751|consen 195 LLQQLEELEKEEAELDHQLKELEFKAERLN 224 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 334
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=67.12 E-value=4.9 Score=44.90 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=15.9
Q ss_pred CCceeEEEeccCCCCcceec
Q 001669 80 GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 80 G~n~ti~ayG~tgSGKT~Tm 99 (1034)
-.++.++..|..|||||+||
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHH
Confidence 36778888899999999998
No 335
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.01 E-value=2.5e+02 Score=32.61 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=14.1
Q ss_pred cccccccCCCCCCCCCCccccc--cccccc
Q 001669 918 SLEHFADDTSGPPSPMSVPAQK--QLKYTP 945 (1034)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 945 (1034)
.+...++++-.|+||..||..- -+.|||
T Consensus 469 ~~ddldee~v~pvs~q~p~~~~~~~lr~~~ 498 (575)
T KOG4403|consen 469 NVDDLDEEFVKPVSPQIPPSQQTANLRLVP 498 (575)
T ss_pred ChhhhhhhcccccCCCCCcccccccccccC
Confidence 3444445555566666665432 344444
No 336
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=67.01 E-value=2.4 Score=48.03 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=18.9
Q ss_pred hhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 72 PLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 72 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++..++.+. ..|+..|+||||||++|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 3444444432 34677899999999998
No 337
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.97 E-value=1.1e+02 Score=28.59 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001669 535 KKIAELEDEKRTVQKERDH 553 (1034)
Q Consensus 535 ~ki~eLe~ei~~l~~e~~~ 553 (1034)
..-.+++..+..|+.+++.
T Consensus 9 as~~el~n~La~Le~slE~ 27 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLED 27 (107)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 338
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=66.83 E-value=2 Score=50.30 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=34.9
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHH-Hhhc--C--CceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~-~~l~--G--~n~ti~ayG~tgSGKT~Tm 99 (1034)
..++|+.|-|.+ ..-..+.+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~-~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLD-IQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 357888888743 3345565555556654 3443 3 3457889999999999976
No 339
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=66.55 E-value=4.9 Score=44.84 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.1
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999998
No 340
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=65.56 E-value=3.6 Score=43.43 Aligned_cols=19 Identities=37% Similarity=0.636 Sum_probs=13.8
Q ss_pred CceeEEEeccCCCCcceec
Q 001669 81 YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 81 ~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+-.|++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5557899999999999875
No 341
>PHA00729 NTP-binding motif containing protein
Probab=65.41 E-value=4.5 Score=43.32 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=20.8
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..++..+..|-=..|+.+|.+|+||||..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 44555555433347899999999999875
No 342
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.39 E-value=95 Score=37.67 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=9.1
Q ss_pred hhHHHhhcCCceeEEEec
Q 001669 72 PLVDGLFQGYNATVLAYG 89 (1034)
Q Consensus 72 plv~~~l~G~n~ti~ayG 89 (1034)
.++..+-.|.+..=.++|
T Consensus 71 ~il~~lP~~tkLVQVTg~ 88 (652)
T COG2433 71 RILKRLPEGTKLVQVTGR 88 (652)
T ss_pred HHHHhCCCCceEEEEeCC
Confidence 344455556555544444
No 343
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=65.08 E-value=2e+02 Score=30.81 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=21.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 599 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQH 630 (1034)
Q Consensus 599 ~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~r 630 (1034)
.+..-.-..+.++..|+.+|.++|+....+..
T Consensus 186 ~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 186 ELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444556777788888888888877766543
No 344
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=64.68 E-value=2.7 Score=45.25 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=15.1
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
.-+|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 457889999999998864
No 345
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=64.60 E-value=3.3e+02 Score=33.18 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=14.5
Q ss_pred CcchhhhhhhccchhhhhccCCCCC
Q 001669 1005 KPWRLSEWIRHSDETIVRAKPRPRA 1029 (1034)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1034)
.|..+--||-+-...+...||..+.
T Consensus 405 ~~~~~~a~IV~~AD~lsa~rpgar~ 429 (514)
T TIGR03319 405 EPTSIEAVLVAAADALSAARPGARR 429 (514)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCcc
Confidence 3555555555555566666666553
No 346
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=64.59 E-value=2.8 Score=52.02 Aligned_cols=43 Identities=21% Similarity=0.435 Sum_probs=30.7
Q ss_pred eeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 48 SFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 48 ~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.-+||.++|.+ .... .++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46788888632 2222 3455556688888999999999999876
No 347
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.18 E-value=4.3 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.3
Q ss_pred hcCCceeEEEeccCCCCcceec
Q 001669 78 FQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 78 l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+......++.+|++|||||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 4444556788999999999887
No 348
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=63.86 E-value=2.8 Score=48.04 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=18.5
Q ss_pred hhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 72 PLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 72 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.++..++. ....|+..|+||||||++|
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 34444443 2344677899999999998
No 349
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=63.33 E-value=2.4e+02 Score=31.20 Aligned_cols=21 Identities=5% Similarity=0.102 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHH
Q 001669 796 RISSLENMLSISSNSLVAMAS 816 (1034)
Q Consensus 796 qi~~Le~~~~~~~~~~~~l~~ 816 (1034)
....++.-+..+.+.++.|..
T Consensus 253 ~~~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 253 DRQRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666655533
No 350
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=63.30 E-value=3.5 Score=47.22 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=28.9
Q ss_pred eeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCccee
Q 001669 50 TFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYT 98 (1034)
Q Consensus 50 ~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 98 (1034)
+||.|+| |+.+... ..|+=.-+-.|.=.+.+-|||.|+|||+.
T Consensus 22 ~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 5666665 3444433 34555555567777778899999999975
No 351
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=63.28 E-value=2e+02 Score=30.25 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001669 577 AHKLKSLEAQILDLKKKQEN 596 (1034)
Q Consensus 577 e~kl~eLe~ql~dL~~k~~~ 596 (1034)
+.++..|+.++..|+.....
T Consensus 86 rekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 86 REKLGQLEAELAELREELAC 105 (202)
T ss_pred hhhhhhhHHHHHHHHHHHHh
Confidence 44566666666666544443
No 352
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.14 E-value=3.3e+02 Score=32.66 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 001669 596 NQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ---------HRIKQEAEQFRQWKASR 646 (1034)
Q Consensus 596 ~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~---------rkl~~E~~~~r~~k~~~ 646 (1034)
+...+...+.++..+...|-.+|-+.+.++..-+ +-+++.++.|++...+.
T Consensus 100 k~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~ 159 (475)
T PRK10361 100 KIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDS 159 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3345555666666777777777666666654433 44445555554444433
No 353
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.09 E-value=3.3e+02 Score=32.68 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 613 RLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQL 653 (1034)
Q Consensus 613 ~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qL 653 (1034)
++..|++.+-..-..|...++.--..+.+++..+++-+..|
T Consensus 659 dFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al 699 (741)
T KOG4460|consen 659 DFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSAL 699 (741)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444433333333333333333334444444444444444
No 354
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=63.02 E-value=3.2 Score=40.59 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.8
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
.|+.+|++|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999875
No 355
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.88 E-value=3.6 Score=48.59 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=19.2
Q ss_pred hHHHhhcCCceeEEEeccCCCCcceec
Q 001669 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+...+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 333334555556777999999999876
No 356
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.77 E-value=3.3 Score=45.91 Aligned_cols=17 Identities=47% Similarity=0.712 Sum_probs=14.2
Q ss_pred ceeEEEeccCCCCccee
Q 001669 82 NATVLAYGQTGSGKTYT 98 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~T 98 (1034)
.+.|+..||||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 45688899999999974
No 357
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.71 E-value=3.4e+02 Score=32.65 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001669 616 DEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 616 ~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~ 669 (1034)
..|+.++.+++.-.+.+.++++.|+.....+-..+.+|+.+....+..+..++.
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlke 366 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKE 366 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888888888888888888777666666555543
No 358
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=62.49 E-value=3.1e+02 Score=32.10 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 631 RIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRL 692 (1034)
Q Consensus 631 kl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~L 692 (1034)
.|-.++..|-.....++.....+...+.+.+.-+..++..+......+...++.+...+..|
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555555555555555556666666666666666666655555555555555555544
No 359
>PRK13764 ATPase; Provisional
Probab=62.32 E-value=3.7 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.3
Q ss_pred HhhcCCceeEEEeccCCCCcceec
Q 001669 76 GLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 76 ~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..+......|+..|+||||||+++
T Consensus 251 ~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 251 ERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 333344455899999999999998
No 360
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=62.00 E-value=5.6 Score=46.09 Aligned_cols=35 Identities=20% Similarity=0.465 Sum_probs=26.5
Q ss_pred ChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 61 PSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 61 ~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|..+|+.++..+.. .....+|..|+.|+||||.+
T Consensus 5 eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 5 EQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 378888887665443 44456788999999999987
No 361
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=61.99 E-value=4.4 Score=49.08 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=22.8
Q ss_pred hhhhHHHhhcCCc--eeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~G~n--~ti~ayG~tgSGKT~Tm 99 (1034)
|+..+...+.|.. ..++.+||+|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4556666665553 46788999999999998
No 362
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=61.67 E-value=5.9e+02 Score=35.12 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=12.0
Q ss_pred EEeccCCCCcceec
Q 001669 86 LAYGQTGSGKTYTM 99 (1034)
Q Consensus 86 ~ayG~tgSGKT~Tm 99 (1034)
+-.|++|||||.+|
T Consensus 28 ~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 28 LLRGNNGAGKSKVL 41 (1353)
T ss_pred EEECCCCCcHHHHH
Confidence 44599999999988
No 363
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.44 E-value=3.1e+02 Score=31.82 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001669 602 KQKQKSDEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHK 666 (1034)
Q Consensus 602 k~k~k~ee~~~~Le~ei~~~K~~k~~l~---rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~ 666 (1034)
..+.+.++.+.+++.++++-.++...+. -.++.+.+..+.-.+.+|-++..|+++.+.+..+...
T Consensus 6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444443 2234555555666666777777777777776666555
No 364
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.06 E-value=3.2e+02 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 668 QALNQRQKLVLQRKTEEAAMATKRLKELLESR 699 (1034)
Q Consensus 668 q~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~ 699 (1034)
|.-+|-+-.-|..|-..+....+..+|..++-
T Consensus 342 q~T~E~E~q~~~kkrqnaekql~~Ake~~ekl 373 (575)
T KOG4403|consen 342 QLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKL 373 (575)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44445555555555555554455555555533
No 365
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=60.99 E-value=3.6 Score=42.21 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.8
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
+.++-+||||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999975
No 366
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=60.85 E-value=5.3 Score=44.86 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.9
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
.++-||++|+|||+..
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999876
No 367
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=60.59 E-value=2.5e+02 Score=30.50 Aligned_cols=16 Identities=6% Similarity=0.364 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001669 381 EMLKMRQQLEFLQAEL 396 (1034)
Q Consensus 381 ei~~Lr~ql~~L~~eL 396 (1034)
.+..+...+..+...+
T Consensus 6 KL~~i~e~~~~f~~~l 21 (247)
T PF06705_consen 6 KLASINERFSGFESDL 21 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555555
No 368
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=60.39 E-value=6 Score=45.73 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.8
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
...|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 566777899999999998
No 369
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=60.29 E-value=2.9 Score=39.23 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.5
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999987
No 370
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=60.22 E-value=1.9e+02 Score=28.85 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 599 QLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKA 644 (1034)
Q Consensus 599 ~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~ 644 (1034)
++.....+++.++..++.++.........+..+++......+..+.
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555555555544444444333
No 371
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=60.11 E-value=2.8e+02 Score=30.86 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=10.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 001669 800 LENMLSISSNSLVAMASQLSEAEE 823 (1034)
Q Consensus 800 Le~~~~~~~~~~~~l~~~l~e~e~ 823 (1034)
++..++.++.+-.-|.+||.|+..
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344445555555544
No 372
>PLN02939 transferase, transferring glycosyl groups
Probab=60.01 E-value=5.2e+02 Score=33.91 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001669 533 FGKKIAELEDEKRTVQKER 551 (1034)
Q Consensus 533 ~e~ki~eLe~ei~~l~~e~ 551 (1034)
++.-+++|+..+..-+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~ 287 (977)
T PLN02939 269 LDASLRELESKFIVAQEDV 287 (977)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 3344555555544444443
No 373
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.84 E-value=2.6e+02 Score=30.45 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=9.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 001669 599 QLLKQKQKSDEAAKRLQDEIQFIK 622 (1034)
Q Consensus 599 ~l~k~k~k~ee~~~~Le~ei~~~K 622 (1034)
++...+..+...+..+..+++.++
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~ 69 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLE 69 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433333
No 374
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=59.76 E-value=15 Score=46.03 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=24.9
Q ss_pred eeceeeCCCCCChHHHHHHhhhhhHHHhhcCC-ceeEEEeccCCCCcceec
Q 001669 50 TFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 50 ~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~-n~ti~ayG~tgSGKT~Tm 99 (1034)
+||.|+| |+.+ +..|...+-.|. ...++-||+.|+|||.+.
T Consensus 14 tFdEVIG-----Qe~V----v~~L~~aL~~gRL~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 14 DFASLVG-----QEHV----VRALTHALDGGRLHHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred cHHHHcC-----cHHH----HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 6777775 2232 222333333333 456778999999999875
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.57 E-value=3.8 Score=47.35 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.8
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457778999999999998
No 376
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=59.48 E-value=13 Score=48.09 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=15.0
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
++++-+|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999976
No 377
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=59.44 E-value=5.2 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.0
Q ss_pred cCCceeEEEeccCCCCcceec
Q 001669 79 QGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 454557788999999999886
No 378
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.38 E-value=5.4 Score=40.58 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=16.1
Q ss_pred HhhcCCceeEEEeccCCCCcceec
Q 001669 76 GLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 76 ~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+..+. ..++..|++|||||+++
T Consensus 19 ~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 19 ALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHcCC-CcEEEECCCCCchhHHH
Confidence 344442 34466799999999987
No 379
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=59.09 E-value=8 Score=41.36 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=26.8
Q ss_pred eeceeeCCCCCChHHHHHHhhhhhHHHhhc-C-CceeEEEeccCCCCccee
Q 001669 50 TFDHVYGSTGSPSSAMFDECIAPLVDGLFQ-G-YNATVLAYGQTGSGKTYT 98 (1034)
Q Consensus 50 ~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~-G-~n~ti~ayG~tgSGKT~T 98 (1034)
+||.+.| |+.+-.. ...++..+.. | .=..++-|||.|.|||+.
T Consensus 22 ~L~efiG-----Q~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 22 SLDEFIG-----QEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp SCCCS-S------HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred CHHHccC-----cHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 6677665 5666554 5677777653 3 223567799999999864
No 380
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=58.94 E-value=6.4 Score=44.52 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=20.3
Q ss_pred hhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+.+++..++.+. .+|+-.|+||||||++|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 445566666544 34556799999999987
No 381
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=58.94 E-value=2.8e+02 Score=32.78 Aligned_cols=28 Identities=11% Similarity=0.006 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 738 VHEVRFDYEKQSQVRAALAEELAVLKQV 765 (1034)
Q Consensus 738 l~e~~~~~~~~~e~r~~l~~EL~~L~~~ 765 (1034)
+..+++-+.++.+..+++..=+..+++.
T Consensus 294 L~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 294 LKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777766666553
No 382
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=58.89 E-value=12 Score=45.51 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=24.2
Q ss_pred ecCCCcEEEcCceEEEeCCHHHHHHHHHHccccc
Q 001669 180 ETSNGVITLAGSTEVSVSSLKEMAACLEQGSLSR 213 (1034)
Q Consensus 180 e~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R 213 (1034)
...+|.+++.++.+.+..--..++.+|..+.-.|
T Consensus 320 ~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 320 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 3446678888888887776777778887765544
No 383
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.84 E-value=10 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.2
Q ss_pred CCCCcccHhHHHHHHHHHHHhccc
Q 001669 105 DGYQTGIIPLVMNVLFSKIETLKD 128 (1034)
Q Consensus 105 ~~~~~Glipr~~~~LF~~i~~~~~ 128 (1034)
.++.-|++-|++.+|...++...+
T Consensus 783 sGDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 783 SGDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCCccccHHHHHHHHHHHhhcccC
Confidence 345679999999999999988765
No 384
>PRK12704 phosphodiesterase; Provisional
Probab=58.78 E-value=4.2e+02 Score=32.40 Aligned_cols=151 Identities=22% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001669 590 LKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 590 L~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~ 669 (1034)
+...+.....+. +....+.-........+.+..-.+....++.+....+.....+|..+.+-...+.+....+.+.+.
T Consensus 33 l~~Ae~eAe~I~--keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~ 110 (520)
T PRK12704 33 IKEAEEEAKRIL--EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110 (520)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 670 LNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQS 749 (1034)
Q Consensus 670 ~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~~~~ 749 (1034)
.++.....|.++.+++....+++.+....+. .+||....+...+..-.-+.
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~-----------------------------~~l~~~a~lt~~ea~~~l~~ 161 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQL-----------------------------QELERISGLTAEEAKEILLE 161 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHhhc
Q 001669 750 QVRAALAEELAVLKQVDEFASK 771 (1034)
Q Consensus 750 e~r~~l~~EL~~L~~~~e~~~~ 771 (1034)
.....+..+...+-++.+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
T PRK12704 162 KVEEEARHEAAVLIKEIEEEAK 183 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 385
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=58.77 E-value=7.1 Score=46.31 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=32.8
Q ss_pred eEEEeccCCCCcceec---cCCCCCCCCcccHhHHHHHHHHHHHhc
Q 001669 84 TVLAYGQTGSGKTYTM---GTGFKDGYQTGIIPLVMNVLFSKIETL 126 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm---~g~~~~~~~~Glipr~~~~LF~~i~~~ 126 (1034)
.||..|||.|||||-- ++....+.-.|=+....+++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 5899999999999985 232334445677888889999998753
No 386
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.73 E-value=1.7e+02 Score=31.99 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001669 633 KQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQ 672 (1034)
Q Consensus 633 ~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e 672 (1034)
......+.+.+..+..++.+|+++...++....+++..+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555544444444444444444
No 387
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=58.41 E-value=2.7e+02 Score=30.10 Aligned_cols=195 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcCCCCcccHHHHHHHhhhhhcccccccccCCCCChhh
Q 001669 405 SDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLNSIEQTDYQMGENITGDSREI 484 (1034)
Q Consensus 405 ~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l~~~~~~~~~~~~l~~~i~eLe~~L~~~~~~~~~~~e~~~~~~~~~ 484 (1034)
.+.+..|+..-..|..+...-.+.-.-+--+++.-++.+. +|.+.|.+|+..+.
T Consensus 107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmq------e~~sqi~~lK~qq~-------------------- 160 (330)
T KOG2991|consen 107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQ------ECTSQIQYLKQQQQ-------------------- 160 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhC--------------------
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcC
Q 001669 485 DEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAE-LEDEKRTVQKERDHLLTEIENLAS 563 (1034)
Q Consensus 485 ee~~~e~E~~~~q~~l~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~e-Le~ei~~l~~e~~~L~~el~~~~~ 563 (1034)
-.........+-=.+.-....|+..++.....+..+. +++.+-+-.-+.+.-. |-+.-+.|..|-++|-.....-
T Consensus 161 -Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Q-nelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~G-- 236 (330)
T KOG2991|consen 161 -PSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQ-NELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEG-- 236 (330)
T ss_pred -cHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHH-hhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcc--
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 564 NSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWK 643 (1034)
Q Consensus 564 ~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k 643 (1034)
++.+|+.+++ +++...+ +|.+-...+..-+..|..+++.|...-.-|+.+|++--+..+..+
T Consensus 237 ---------------ria~Le~eLA-mQKs~se--Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~ 298 (330)
T KOG2991|consen 237 ---------------RIAELEIELA-MQKSQSE--ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLK 298 (330)
T ss_pred ---------------cHHHHHHHHH-HHHhhHH--HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 001669 644 ASRE 647 (1034)
Q Consensus 644 ~~~e 647 (1034)
.-++
T Consensus 299 k~~~ 302 (330)
T KOG2991|consen 299 KGLE 302 (330)
T ss_pred HHHH
No 388
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=58.36 E-value=2.3e+02 Score=29.24 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 583 LEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ 629 (1034)
Q Consensus 583 Le~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~ 629 (1034)
+..++..|..-..++.+|.....-.|.+++.|+..+..+..+|--++
T Consensus 115 ~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQ 161 (178)
T PF14073_consen 115 LQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQ 161 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666666777777778888899999988888777775544
No 389
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=58.30 E-value=3.4 Score=47.40 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=29.1
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..|.|+.|-| |+++-. -++..+.+-.-+.|+.+|.+||||||++
T Consensus 12 ~~~pf~~ivG-----q~~~k~----al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVG-----QEEMKL----ALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhC-----hHHHHH----HHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 3699999887 344333 3333333333345789999999999987
No 390
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=58.22 E-value=1.4e+02 Score=27.00 Aligned_cols=36 Identities=31% Similarity=0.583 Sum_probs=27.8
Q ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 526 TAALK----QHFGKKIAELEDEKRTVQKERDHLLTEIENL 561 (1034)
Q Consensus 526 ~~~lk----~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 561 (1034)
..+++ ..|+.++.+|+.++..+..|.+.|..++...
T Consensus 36 V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 36 VKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566 5678888999999888888888877766664
No 391
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=58.20 E-value=3.2e+02 Score=30.95 Aligned_cols=230 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 623 AQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQ----------ALNQRQKLVLQRKTEEAAMATKRL 692 (1034)
Q Consensus 623 ~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq----------~~~e~q~~vlkrk~eE~~a~~k~L 692 (1034)
..|++...=|..+++.++..+..+-.-..+|+............+. --......-|-.-+.+....++.|
T Consensus 5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L 84 (319)
T PF09789_consen 5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKL 84 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhccccccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC
Q 001669 693 KELLESRKSSARENSAVTNGNLTNGQSNEKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKG 772 (1034)
Q Consensus 693 ke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~ 772 (1034)
+.+++.-+ ..+.+++.+.+-+-..+...+-........
T Consensus 85 ~~Ev~~Lr------------------------------------------qkl~E~qGD~KlLR~~la~~r~~~~~~~~~ 122 (319)
T PF09789_consen 85 KEEVEELR------------------------------------------QKLNEAQGDIKLLREKLARQRVGDEGIGAR 122 (319)
T ss_pred HHHHHHHH------------------------------------------HHHHHHhchHHHHHHHHHhhhhhhcccccc
Q ss_pred CCCCCccccchhhhcCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHH
Q 001669 773 LSPPRGKNGFARVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFN 852 (1034)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~ 852 (1034)
+.+ ..+ ..+-.|++.+...+..++.++.++..++.|+..
T Consensus 123 ~~~-~er-----------e~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~----------------------------- 161 (319)
T PF09789_consen 123 HFP-HER-----------EDLVEQLEKLREQIEQLERDLQSLLDEKEELVT----------------------------- 161 (319)
T ss_pred ccc-hHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccC
Q 001669 853 SLADARCQLWEKDIEIKEMKEQ-------LKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADD 925 (1034)
Q Consensus 853 ~~~~~r~ql~e~~~~l~e~~~~-------~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~ 925 (1034)
+-...+|....++.+|.-+=.- ++.|-..-+-+.+....++.+.......++..-...-.-+...+++++.-.
T Consensus 162 ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~~~~k~~~~~ 241 (319)
T PF09789_consen 162 ERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKRKKGIIKLGNSA 241 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCC
Q ss_pred CCCCCCCCCc
Q 001669 926 TSGPPSPMSV 935 (1034)
Q Consensus 926 ~~~~~~~~~~ 935 (1034)
.+.....||+
T Consensus 242 ~~~~~~v~s~ 251 (319)
T PF09789_consen 242 SSNLTGVMSA 251 (319)
T ss_pred CCcccccccH
No 392
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=58.06 E-value=3.5 Score=43.39 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=12.5
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
.++.+|.||||||+++
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5788999999999998
No 393
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.01 E-value=1.3e+02 Score=32.83 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 568 QTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRI 632 (1034)
Q Consensus 568 ~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl 632 (1034)
...+.|++++++..+||.++..+ .+++..|..+|+.+++--++|-.|+
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~-----------------~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQ-----------------QQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888883322 2234445555555555555554444
No 394
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=57.81 E-value=1.7e+02 Score=33.82 Aligned_cols=161 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCCCCccccchhhhcCChHHHHHHHHH
Q 001669 721 EKSFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISS 799 (1034)
Q Consensus 721 ~~~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~ 799 (1034)
......|+.++++... ++.+++..+..+.....-+.-+ .+...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~------------------------------------~~~~~ 211 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPK------------------------------------AQSSA 211 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChH------------------------------------HHHHH
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001669 800 LENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLK-EL 878 (1034)
Q Consensus 800 Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~~~~-el 878 (1034)
....+..+..++++++.++.++......-.. .+...+.++...+.++.+...++. ..
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P----------------------~v~~l~~~i~~l~~~i~~e~~~i~~~~ 269 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQLRSITPEQNP----------------------QVPSLQARIKSLRKQIDEQRNQLSGGL 269 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----------------------chHHHHHHHHHHHHHHHHHHHHhhcCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCC-CCCccccc
Q 001669 879 VGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPS-PMSVPAQK 939 (1034)
Q Consensus 879 ~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 939 (1034)
...+.....+...|.++.+-.+.....++.....+..+....+..-..-+|++ |..|..|+
T Consensus 270 ~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~~~~~vi~~p~~P~~p~~P~ 331 (362)
T TIGR01010 270 GDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQLYLEVISQPSLPDDALEPY 331 (362)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeeeCCCCCCCcCCCh
No 395
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=57.64 E-value=3.7 Score=40.14 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.6
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 396
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.48 E-value=1.8e+02 Score=27.89 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001669 587 ILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQF 620 (1034)
Q Consensus 587 l~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~ 620 (1034)
+..++..++..+.+.-.|.+.+..++..+..++.
T Consensus 12 l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~E 45 (119)
T COG1382 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEE 45 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554444443
No 397
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=57.46 E-value=6.1 Score=41.24 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=17.3
Q ss_pred HHhhcCCceeEEEeccCCCCcceec
Q 001669 75 DGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 75 ~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+.++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34455777 567899999999874
No 398
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=57.37 E-value=4.4 Score=38.59 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.2
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 399
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=56.87 E-value=4.9 Score=44.21 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.2
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999986
No 400
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.53 E-value=4.2e+02 Score=31.71 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001669 500 MDKELNELNRRLEEKESEMKL 520 (1034)
Q Consensus 500 l~~el~eL~~~L~~kE~el~~ 520 (1034)
+...+..+..++..++.+...
T Consensus 102 ~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 102 LEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 401
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=56.33 E-value=4.7 Score=33.91 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.6
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999877
No 402
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.71 E-value=1.8e+02 Score=27.15 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001669 795 ARISSLENMLSISSNSLVAMASQLSEAE 822 (1034)
Q Consensus 795 ~qi~~Le~~~~~~~~~~~~l~~~l~e~e 822 (1034)
.++..++..+..+..++..+..++.+.+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~ 33 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENK 33 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555666555553
No 403
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=55.59 E-value=5.3e+02 Score=32.60 Aligned_cols=16 Identities=13% Similarity=0.274 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001669 383 LKMRQQLEFLQAELCA 398 (1034)
Q Consensus 383 ~~Lr~ql~~L~~eL~~ 398 (1034)
..|+.+++.|+.++..
T Consensus 432 ~~Le~elekLk~eilK 447 (762)
T PLN03229 432 RELEGEVEKLKEQILK 447 (762)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 3466777777777743
No 404
>PHA02244 ATPase-like protein
Probab=55.25 E-value=11 Score=43.55 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=19.9
Q ss_pred HHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 66 FDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 66 ~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+......+..-+-.|.+ |+-+|++|+|||+..
T Consensus 105 ~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 105 FHYETADIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 33333344443445655 455899999999865
No 405
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=55.25 E-value=5.5 Score=46.51 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.7
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999987
No 406
>PRK14974 cell division protein FtsY; Provisional
Probab=55.07 E-value=12 Score=42.86 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.2
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+..|++|+|||+|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 468889999999999998
No 407
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=55.04 E-value=5.4e+02 Score=32.53 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=10.0
Q ss_pred EEeEeeCCCCcc
Q 001669 263 KLHLVDLAGSER 274 (1034)
Q Consensus 263 ~l~~VDLAGsEr 274 (1034)
-|+|||.+|...
T Consensus 245 IVtLVDTpGA~p 256 (762)
T PLN03229 245 IVTFIDTPGAYA 256 (762)
T ss_pred EEEEEECCCcCC
Confidence 489999999854
No 408
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.90 E-value=1.3e+02 Score=25.35 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 819 SEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVE 893 (1034)
Q Consensus 819 ~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~ 893 (1034)
+-+++++++. +.+.+++...+......+.+|++...++.+|...+..++.+.+++.
T Consensus 4 saL~~Eirak-------------------Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 4 SALEAEIRAK-------------------QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 409
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=54.53 E-value=5 Score=43.37 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=11.3
Q ss_pred eccCCCCcceec
Q 001669 88 YGQTGSGKTYTM 99 (1034)
Q Consensus 88 yG~tgSGKT~Tm 99 (1034)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 599999999998
No 410
>PLN03025 replication factor C subunit; Provisional
Probab=54.52 E-value=8.3 Score=43.80 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=15.4
Q ss_pred CCceeEEEeccCCCCcceec
Q 001669 80 GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 80 G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|.-..++-||++|+|||++.
T Consensus 32 ~~~~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSI 51 (319)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33334667999999999987
No 411
>PTZ00424 helicase 45; Provisional
Probab=54.47 E-value=6.3 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=19.1
Q ss_pred hHHHhhcCCceeEEEeccCCCCcceec
Q 001669 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556788885 46789999999875
No 412
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=54.29 E-value=9 Score=45.98 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56889999999999988
No 413
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=4 Score=43.61 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=62.5
Q ss_pred ceEEEEEeCCCCCcccccCC--------Cce-EEEeCCCCceeec--C----ceeeeceeeCCCCCChHHHHHHhhhhhH
Q 001669 10 CVKVAVHVRPLIGDERAQGC--------KDC-VAVVPGKPQVQIG--T----HSFTFDHVYGSTGSPSSAMFDECIAPLV 74 (1034)
Q Consensus 10 ~v~V~vRiRP~~~~E~~~~~--------~~~-v~~~~~~~~v~~~--~----~~f~FD~Vf~~~~~~q~~v~~~~~~plv 74 (1034)
.-.-+|||-....+|....+ ..| |-+.|.+...++. . ...+|-.|=|- +-+-++|-+.+--|+.
T Consensus 98 gsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggl-d~qkqeireavelplt 176 (408)
T KOG0727|consen 98 GSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGL-DVQKQEIREAVELPLT 176 (408)
T ss_pred CCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccc-hhhHHHHHHHHhccch
Confidence 34567898887777753221 122 2233333222211 1 12334444332 2344667666666777
Q ss_pred HHhhc---CCc--eeEEEeccCCCCcceeccC-------CC----CC---CCCcccHhHHHHHHHHHHHhc
Q 001669 75 DGLFQ---GYN--ATVLAYGQTGSGKTYTMGT-------GF----KD---GYQTGIIPLVMNVLFSKIETL 126 (1034)
Q Consensus 75 ~~~l~---G~n--~ti~ayG~tgSGKT~Tm~g-------~~----~~---~~~~Glipr~~~~LF~~i~~~ 126 (1034)
..-+- |.+ -.|+.||+.|+|||...-. .| |+ ..-.|==||.++++|......
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 64331 443 4689999999999854310 00 00 001355699999999876653
No 414
>PRK10536 hypothetical protein; Provisional
Probab=53.89 E-value=7.6 Score=42.46 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
..|++.|++||||||..
T Consensus 75 ~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 75 QLIFATGEAGCGKTWIS 91 (262)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48899999999999976
No 415
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=53.80 E-value=13 Score=47.16 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=19.4
Q ss_pred HHHhhcCCceeEEEeccCCCCcceec
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..+.+|.|+.|+| |||||||-+-
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH
Confidence 34567999998875 9999999874
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=53.39 E-value=12 Score=44.22 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=16.1
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
...|+-+|++|+|||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 567888999999999998
No 417
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=53.37 E-value=7.3 Score=45.96 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=24.3
Q ss_pred cCCCCceeEEEeecCCCccCHHHHHHHHHHHH--HHhcccCCc
Q 001669 331 SLGGNSRTVMIACISPADINAEETLNTLKYAN--RARNIQNKP 371 (1034)
Q Consensus 331 sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~--rar~I~~kp 371 (1034)
.+.-..++.+|||++.++.+ +..|.+|- |..-|...|
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecC
Confidence 34557889999999998854 44566553 344444444
No 418
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=53.37 E-value=5.9 Score=45.14 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=28.6
Q ss_pred CceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhcccCccEEEEEeeeeech
Q 001669 81 YNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKDQTEFQLHVSFIEILK 143 (1034)
Q Consensus 81 ~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~~~~~~v~vS~~EIy~ 143 (1034)
+-+.|+-||.+||||||++ ..+|+..+ .-.|.++++|-|.
T Consensus 29 ~PS~~~iyG~sgTGKT~~~-----------------r~~l~~~n------~~~vw~n~~ecft 68 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLV-----------------RQLLRKLN------LENVWLNCVECFT 68 (438)
T ss_pred cceeEEEeccCCCchhHHH-----------------HHHHhhcC------CcceeeehHHhcc
Confidence 3345689999999999987 55666542 2257788888774
No 419
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=53.32 E-value=5.3 Score=42.80 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.8
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
|.-.|++|||||+-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999886
No 420
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=53.24 E-value=17 Score=41.14 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=23.7
Q ss_pred HHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 66 FDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 66 ~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|...+..+|.+.=..-+.+|.-||+=|||||+.|
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 3344444444333356788999999999999987
No 421
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=53.21 E-value=8.8 Score=43.20 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.6
Q ss_pred cCCceeEEEeccCCCCcceec
Q 001669 79 QGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999876
No 422
>PRK02119 hypothetical protein; Provisional
Probab=53.12 E-value=73 Score=27.80 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001669 381 EMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDV 439 (1034)
Q Consensus 381 ei~~Lr~ql~~L~~eL~~~~~~~~~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l 439 (1034)
++..+...|..|+..+.. ..+.+..|.+.+.....++..|.+++..+.+++..+
T Consensus 3 ~~~~~e~Ri~~LE~rla~-----QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 3 IQQNLENRIAELEMKIAF-----QENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred chHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677778888777765 456667777777777777777777777776665544
No 423
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=52.99 E-value=2.7e+02 Score=35.64 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCCCCccccchhhhcCChHHHHH
Q 001669 717 GQSNEKSFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMA 795 (1034)
Q Consensus 717 ~~~~~~~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1034)
+.....+...|+.+.+..+. ++.+++.+++.+.....-..-+.+. .....
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea-----------------------------~~~l~ 311 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEA-----------------------------KAVLE 311 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH-----------------------------HHHHH
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 796 RISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQL 875 (1034)
Q Consensus 796 qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~~~ 875 (1034)
++.+|+..+..+..+.+++.....+-.- .+...+.+...++.++.+++.++
T Consensus 312 ~~~~l~~ql~~l~~~~~~l~~~~~~~hP-----------------------------~v~~l~~~~~~L~~~~~~l~~~~ 362 (726)
T PRK09841 312 QIVNVDNQLNELTFREAEISQLYKKDHP-----------------------------TYRALLEKRQTLEQERKRLNKRV 362 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCc-----------------------------hHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCCc
Q 001669 876 KELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPSPMSV 935 (1034)
Q Consensus 876 ~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1034)
..+-....++.....+..-.....+.-++...-...+...+++-=..-|.-..|..|.+|
T Consensus 363 ~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~~~~~rIid~A~~p~~P~~P 422 (726)
T PRK09841 363 SAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQPQPVKP 422 (726)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeccCCCCCCCCCCc
No 424
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=52.96 E-value=16 Score=41.90 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=22.0
Q ss_pred hhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..++..++.+. +.|+..|+||||||.++
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 445666666654 67888899999999887
No 425
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.93 E-value=7.1 Score=42.94 Aligned_cols=79 Identities=28% Similarity=0.429 Sum_probs=51.7
Q ss_pred eeeceeeCCCCCChHHHHHHhhhhhH-HHhhcCCc---eeEEEeccCCCCcceecc---C----CCCCCCC-------cc
Q 001669 49 FTFDHVYGSTGSPSSAMFDECIAPLV-DGLFQGYN---ATVLAYGQTGSGKTYTMG---T----GFKDGYQ-------TG 110 (1034)
Q Consensus 49 f~FD~Vf~~~~~~q~~v~~~~~~plv-~~~l~G~n---~ti~ayG~tgSGKT~Tm~---g----~~~~~~~-------~G 110 (1034)
..++.|-|-.+. -+.+-+.++.|+- -.+|.|.. ..|+.||+.|+||+|.-- + .|-+-.. .|
T Consensus 130 VkWsDVAGLE~A-KeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 130 VKWSDVAGLEGA-KEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CchhhhccchhH-HHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 456667765544 5677777777874 57787775 679999999999999641 0 0001111 25
Q ss_pred cHhHHHHHHHHHHHhccc
Q 001669 111 IIPLVMNVLFSKIETLKD 128 (1034)
Q Consensus 111 lipr~~~~LF~~i~~~~~ 128 (1034)
=-...+..||......+.
T Consensus 209 ESEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKP 226 (439)
T ss_pred cHHHHHHHHHHHHHhcCC
Confidence 556788899987766443
No 426
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=52.89 E-value=7.2 Score=46.71 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=18.4
Q ss_pred HHHhhcCCceeEEEeccCCCCcceec
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..+++|.| |++.++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 334567887 677889999999764
No 427
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=52.85 E-value=7.9 Score=40.79 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=19.2
Q ss_pred HHhhcCC---ceeEEEeccCCCCcceec
Q 001669 75 DGLFQGY---NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 75 ~~~l~G~---n~ti~ayG~tgSGKT~Tm 99 (1034)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455443 678899999999999875
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=52.63 E-value=6 Score=41.82 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.3
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
|.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 429
>PRK04195 replication factor C large subunit; Provisional
Probab=52.41 E-value=8.4 Score=46.48 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=22.1
Q ss_pred hhhhHHHhhcCC-ceeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~G~-n~ti~ayG~tgSGKT~Tm 99 (1034)
+..++.....|. ...++.||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 445555555665 557888999999999886
No 430
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=52.37 E-value=23 Score=43.38 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=63.2
Q ss_pred eeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHHHHhccc
Q 001669 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSKIETLKD 128 (1034)
Q Consensus 49 f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~i~~~~~ 128 (1034)
++||.++|.+. ....++ ..+.. +...+..|+-+|.+||||++.- ++++.. ... .
T Consensus 193 ~~~~~liG~s~-----~~~~~~-~~~~~-~a~~~~pvli~Ge~GtGK~~lA--------------~~ih~~---s~r--~ 246 (534)
T TIGR01817 193 GKEDGIIGKSP-----AMRQVV-DQARV-VARSNSTVLLRGESGTGKELIA--------------KAIHYL---SPR--A 246 (534)
T ss_pred CccCceEECCH-----HHHHHH-HHHHH-HhCcCCCEEEECCCCccHHHHH--------------HHHHHh---CCC--C
Confidence 78899887432 222222 22222 2367888999999999998754 222221 111 1
Q ss_pred CccEEEEEeeeeechhhhhh-cCCCCCCCCCCCCCCCCCcccCCCCCCceeEecCCCcEEEcCceEEEeCCHHHHHHHHH
Q 001669 129 QTEFQLHVSFIEILKEEVRD-LLDPPCLNKPDTANGHTGKVTVPGKPPIQIRETSNGVITLAGSTEVSVSSLKEMAACLE 207 (1034)
Q Consensus 129 ~~~~~v~vS~~EIy~e~v~D-LL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~e~~v~s~~e~~~~l~ 207 (1034)
..-.|.|.|-.+..+.+-. |+.... +..++.. . ..+-.+....+|.+++.++...+..--..++.+|.
T Consensus 247 -~~pfv~i~c~~~~~~~~~~~lfg~~~-------~~~~~~~--~-~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~ 315 (534)
T TIGR01817 247 -KRPFVKVNCAALSETLLESELFGHEK-------GAFTGAI--A-QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQ 315 (534)
T ss_pred -CCCeEEeecCCCCHHHHHHHHcCCCC-------CccCCCC--c-CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHh
Confidence 1223445555544433322 222110 0011100 0 01111233445667888777776665666777777
Q ss_pred Hccccc
Q 001669 208 QGSLSR 213 (1034)
Q Consensus 208 ~g~~~R 213 (1034)
.+.-.|
T Consensus 316 ~~~~~~ 321 (534)
T TIGR01817 316 EGEFER 321 (534)
T ss_pred cCcEEE
Confidence 665433
No 431
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.26 E-value=3.6e+02 Score=29.65 Aligned_cols=188 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CChhhhHH
Q 001669 498 NSMDKELNELNRRLEEKESEMKLVGGS--DTAALKQHFGKKIAELEDEKRTVQKERDHLLTEIENLAS----NSDGQTQK 571 (1034)
Q Consensus 498 ~~l~~el~eL~~~L~~kE~el~~l~~~--~~~~lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~----~~~~~~~k 571 (1034)
..++.++..|...++.+.......... ....--...-.+...|...|..+...+..+...+..+.. .+.....+
T Consensus 48 ~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~ 127 (264)
T PF06008_consen 48 DPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQR 127 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 572 LQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELL 651 (1034)
Q Consensus 572 l~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~ 651 (1034)
...+.+.-|.+++.. .+...+...+.....-+.-+..+++--.......+.=.+..+....+.+-.+.
T Consensus 128 ~l~ea~~mL~emr~r------------~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~ 195 (264)
T PF06008_consen 128 ALAEAQRMLEEMRKR------------DFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQ 195 (264)
T ss_pred HHHHHHHHHHHHHhc------------cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001669 652 QLRKEGRRNEYERHKLQALNQRQKLV---LQRKTEEAAMATKRLKELLE 697 (1034)
Q Consensus 652 qLk~e~rk~e~el~~Lq~~~e~q~~v---lkrk~eE~~a~~k~Lke~le 697 (1034)
+|+.-+........+....+..-... ++++..++........+.+.
T Consensus 196 Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 196 DLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=52.26 E-value=7.3 Score=43.20 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=19.1
Q ss_pred hhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 72 PLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 72 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
-+++.++.. +.-|+-+|++|||||.++
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 344444443 556688899999999877
No 433
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.26 E-value=5.5e+02 Score=31.84 Aligned_cols=22 Identities=36% Similarity=0.361 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001669 630 HRIKQEAEQFRQWKASREKELL 651 (1034)
Q Consensus 630 rkl~~E~~~~r~~k~~~eke~~ 651 (1034)
--|+.=+++.++..+..|++..
T Consensus 938 ~~lkrm~~~~k~ema~iErecL 959 (1187)
T KOG0579|consen 938 AMLKRMAEKHKEEMASIERECL 959 (1187)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3333344444555555555543
No 434
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=52.09 E-value=1.7e+02 Score=25.97 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 001669 600 LLKQKQKSDEAAKRLQDEIQ 619 (1034)
Q Consensus 600 l~k~k~k~ee~~~~Le~ei~ 619 (1034)
..++|.+.|+.+..|..+|+
T Consensus 55 h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 55 HRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 435
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.96 E-value=1.6e+02 Score=25.68 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001669 638 QFRQWKASREKELLQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 638 ~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~ 669 (1034)
.+|......++.+..|+......+.++..|+.
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555554444
No 436
>PRK04328 hypothetical protein; Provisional
Probab=51.91 E-value=9.7 Score=41.62 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=21.8
Q ss_pred hhHHHhhcC---CceeEEEeccCCCCccee
Q 001669 72 PLVDGLFQG---YNATVLAYGQTGSGKTYT 98 (1034)
Q Consensus 72 plv~~~l~G---~n~ti~ayG~tgSGKT~T 98 (1034)
|-+|.++.| ..++++.+|++|||||..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 457777776 488899999999999764
No 437
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=51.68 E-value=9 Score=41.13 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=23.0
Q ss_pred hhhHHHhhcC---CceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~G---~n~ti~ayG~tgSGKT~Tm 99 (1034)
-|-+|.++.| ...++.-||++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 4567777775 3667889999999999876
No 438
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=51.66 E-value=6.1 Score=42.30 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=15.9
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
...++-||++|+|||++.
T Consensus 12 ~~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTI 29 (220)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999987
No 439
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.51 E-value=1.7e+02 Score=25.58 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 860 QLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLAR 909 (1034)
Q Consensus 860 ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~ 909 (1034)
.+.-++.++.+++++...|......+..++..|..+...-+..+..|+..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566777888888888887777778888888888877777777777654
No 440
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.41 E-value=12 Score=42.03 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=26.7
Q ss_pred HHHhhcCCceeEEEeccCCCCcceeccCCCC---CCCCcccHhHHHH
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTMGTGFK---DGYQTGIIPLVMN 117 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm~g~~~---~~~~~Glipr~~~ 117 (1034)
|-.++.|.+| +....||||||..+-.+.- ..+..|++..++.
T Consensus 38 IpkILeGrdc--ig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 38 IPKILEGRDC--IGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hHHHhccccc--ccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 4456789998 5677899999998844321 2233455554444
No 441
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=51.27 E-value=6.8 Score=47.81 Aligned_cols=44 Identities=30% Similarity=0.428 Sum_probs=30.0
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+..+||.+++.+ .. +..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs-----~~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQE-----EG----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcH-----HH----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 446788888733 11 233334456667778888999999998854
No 442
>PRK11519 tyrosine kinase; Provisional
Probab=51.24 E-value=4.5e+02 Score=33.51 Aligned_cols=159 Identities=8% Similarity=0.035 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhcCCCCCCccccchhhhcCChHHH
Q 001669 717 GQSNEKSFQRWLDHELEVMV-NVHEVRFDYEKQSQVRAA--LAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNAR 793 (1034)
Q Consensus 717 ~~~~~~~~k~wl~~ElE~~~-~l~e~~~~~~~~~e~r~~--l~~EL~~L~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1034)
+.........|+.+.+..+. ++.+++..++.+.....- +..+...+
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~------------------------------- 309 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAV------------------------------- 309 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH-------------------------------
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 794 MARISSLENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKE 873 (1034)
Q Consensus 794 ~~qi~~Le~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~ 873 (1034)
..++.+++..+..++.+..+|.....+-.- .......+...++.++.+++.
T Consensus 310 l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP-----------------------------~v~~l~~~~~~L~~~~~~l~~ 360 (719)
T PRK11519 310 LDSMVNIDAQLNELTFKEAEISKLYTKEHP-----------------------------AYRTLLEKRKALEDEKAKLNG 360 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----------------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCCCc
Q 001669 874 QLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSASGNLHNSLEHFADDTSGPPSPMSV 935 (1034)
Q Consensus 874 ~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1034)
+...+.....++.....+..-.....+.-++.......+...+++-=..-|.-..|..|.+|
T Consensus 361 ~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a~~~~~~rIid~A~~P~~P~~P 422 (719)
T PRK11519 361 RVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPGVLKP 422 (719)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCCCCeEEEecCCCCCCCCCC
No 443
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=51.16 E-value=5 Score=47.70 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 001669 533 FGKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQ 586 (1034)
Q Consensus 533 ~e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~q 586 (1034)
|++.|..|++.+.....-+++...++..- ++...|+-.+|..+|.+=|..
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~Q----Eqqt~Kll~qyq~RLedSE~R 423 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQ----EQQTQKLLLQYQARLEDSEER 423 (495)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhhhhhHHH
Confidence 55555555555444444444444443332 345556666666666665554
No 444
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=50.47 E-value=6.7 Score=41.17 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=14.4
Q ss_pred CceeEEEeccCCCCcceec
Q 001669 81 YNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 81 ~n~ti~ayG~tgSGKT~Tm 99 (1034)
....||..|+.|||||+++
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3456888999999998876
No 445
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.39 E-value=2.4e+02 Score=27.14 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001669 590 LKKKQENQVQLLKQKQKSDEAAKRLQDE 617 (1034)
Q Consensus 590 L~~k~~~~~~l~k~k~k~ee~~~~Le~e 617 (1034)
++.-+.....+...+..++.+....+.-
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~ 43 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKA 43 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444443333333
No 446
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=50.37 E-value=9.7 Score=48.16 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=27.0
Q ss_pred HHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 63 SAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 63 ~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..||..+-.-.-.-.-.|.|-||+..|.+|||||+|+
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 4566543333333334699999999999999999997
No 447
>PRK04406 hypothetical protein; Provisional
Probab=50.32 E-value=97 Score=27.22 Aligned_cols=54 Identities=6% Similarity=0.191 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001669 381 EMLKMRQQLEFLQAELCARGGGSSSDEVQVLKERIAWLEAANEDLCRELHEYRSRCTDV 439 (1034)
Q Consensus 381 ei~~Lr~ql~~L~~eL~~~~~~~~~~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l 439 (1034)
.+..+...|..|+..+.. ..+.+..|.+.+.....++..|.+++..+.+++..+
T Consensus 5 ~~~~le~Ri~~LE~~lAf-----QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 5 TIEQLEERINDLECQLAF-----QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577778888877765 455667777777777777777777777766665443
No 448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=50.07 E-value=9.7 Score=50.47 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=19.8
Q ss_pred hhhHHHhhcCCceeEEEeccCCCCcceecc
Q 001669 71 APLVDGLFQGYNATVLAYGQTGSGKTYTMG 100 (1034)
Q Consensus 71 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 100 (1034)
..++..+-.|...+++ ..+||||||+||.
T Consensus 423 ~ai~~a~~~g~r~~Ll-~maTGSGKT~tai 451 (1123)
T PRK11448 423 QAVEKAIVEGQREILL-AMATGTGKTRTAI 451 (1123)
T ss_pred HHHHHHHHhccCCeEE-EeCCCCCHHHHHH
Confidence 3344455567665444 4899999999983
No 449
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=49.96 E-value=5.8 Score=43.94 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=38.3
Q ss_pred cCceeeeceeeCCCCCChHHHHHHhhhhhHHHhh-c--CCc--eeEEEeccCCCCccee
Q 001669 45 GTHSFTFDHVYGSTGSPSSAMFDECIAPLVDGLF-Q--GYN--ATVLAYGQTGSGKTYT 98 (1034)
Q Consensus 45 ~~~~f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l-~--G~n--~ti~ayG~tgSGKT~T 98 (1034)
++..++||+|-|-. .+-.++-+.+.-|++...+ . |.. -.++-||+.|+|||+-
T Consensus 125 ~~~~~s~~~~ggl~-~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 125 DPRNISFENVGGLF-YQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred CccccCHHHhCChH-HHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHH
Confidence 35678999988733 3346777788889888654 2 442 3578899999999984
No 450
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.89 E-value=14 Score=41.19 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=16.3
Q ss_pred CCceeEEEeccCCCCcceec
Q 001669 80 GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 80 G~n~ti~ayG~tgSGKT~Tm 99 (1034)
-.|-.|+..||+|+|||..+
T Consensus 175 t~NRliLlhGPPGTGKTSLC 194 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLC 194 (423)
T ss_pred eeeeEEEEeCCCCCChhHHH
Confidence 34556888999999999876
No 451
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.70 E-value=1.3e+02 Score=36.87 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001669 875 LKELVGLLRQSEVRRKEVEEELKLREQAVAITLAR 909 (1034)
Q Consensus 875 ~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~ 909 (1034)
+.++......++.+..++.+++...+.+++.+...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33333444445555555555555555555555543
No 452
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=49.69 E-value=6.6 Score=46.18 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=19.6
Q ss_pred cCCceeEEEeccCCCCcceeccCCCCCCCCcccHh
Q 001669 79 QGYNATVLAYGQTGSGKTYTMGTGFKDGYQTGIIP 113 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glip 113 (1034)
.|.| +|.||+.|||||++. ..-+||+|
T Consensus 197 GgHn--Ll~~GpPGtGKTmla------~Rl~~lLP 223 (490)
T COG0606 197 GGHN--LLLVGPPGTGKTMLA------SRLPGLLP 223 (490)
T ss_pred cCCc--EEEecCCCCchHHhh------hhhcccCC
Confidence 3444 477999999999886 23467776
No 453
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=49.64 E-value=8.8 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=18.9
Q ss_pred HHHhhcCCceeEEEeccCCCCcceec
Q 001669 74 VDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 74 v~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|..+++|.| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 444567877 788899999999874
No 454
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.60 E-value=12 Score=41.77 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=22.3
Q ss_pred hhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+.|++ ..+.--+..|-.||+|++|||.++
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 34555 445566778889999999999987
No 455
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=49.58 E-value=11 Score=47.48 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=21.2
Q ss_pred hhhhhHHHhhc-----CCceeEEEeccCCCCcceec
Q 001669 69 CIAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 69 ~~~plv~~~l~-----G~n~ti~ayG~tgSGKT~Tm 99 (1034)
++..++..+.. |.+..|+. -+||||||+||
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~ 280 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTM 280 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHH
Confidence 35666666665 44555554 48999999999
No 456
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.10 E-value=3.3e+02 Score=28.39 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 529 LKQHFGKKIAELEDEKRTVQKERDHLLTEIENL 561 (1034)
Q Consensus 529 lk~~~e~ki~eLe~ei~~l~~e~~~L~~el~~~ 561 (1034)
.......++..|+.++..+...+..+...+...
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777777776666665
No 457
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=48.93 E-value=14 Score=41.84 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.3
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
...|...|++|+|||+|+
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 346777899999999998
No 458
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=48.89 E-value=3.8e+02 Score=30.24 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001669 838 RSMADAKNLLQYMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAITLARSA 911 (1034)
Q Consensus 838 rsl~eak~~l~~l~~~~~~~r~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l~~~~~ 911 (1034)
.+|--.|..|.|..+.+-+ .+.+.+..+.++.+.+.+....++.+......|..++.+..+++...-....
T Consensus 101 aQLDNek~~l~yqvd~Lkd---~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKD---KLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred hhhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777766655 6666666677777777665555555566666677777777776655444333
No 459
>PF13173 AAA_14: AAA domain
Probab=48.89 E-value=7.4 Score=37.63 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.3
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999987
No 460
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.89 E-value=5e+02 Score=30.36 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHc
Q 001669 378 MSTEMLKMRQQLEFLQAELCAR 399 (1034)
Q Consensus 378 ~~~ei~~Lr~ql~~L~~eL~~~ 399 (1034)
....+.+|+.++++|.+++...
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888999999998888663
No 461
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.66 E-value=11 Score=45.31 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=26.5
Q ss_pred eeeceeeCCCCCChHHHHHHhhhhhHHHhhcCC-ceeEEEeccCCCCcceec
Q 001669 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 49 f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~-n~ti~ayG~tgSGKT~Tm 99 (1034)
-+||.|.|. +.+ +..+...+-.|. ...++-||+.|+|||++.
T Consensus 11 ~~~~divGq-----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 11 KTFSEVVGQ-----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CCHHHccCc-----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 467888763 233 233333333443 345788999999999876
No 462
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=48.62 E-value=18 Score=39.36 Aligned_cols=37 Identities=19% Similarity=0.440 Sum_probs=26.4
Q ss_pred eEEEeccCCCCcceec-----cCCCC-CCCCcccHhHHHHHHH
Q 001669 84 TVLAYGQTGSGKTYTM-----GTGFK-DGYQTGIIPLVMNVLF 120 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm-----~g~~~-~~~~~Glipr~~~~LF 120 (1034)
.|+.-|.+|||||..+ .|-|. +.-.+.|+|.+++-+.
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~ 45 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLML 45 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHh
Confidence 4678899999999887 22222 4445788888887554
No 463
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=48.58 E-value=5.4 Score=44.46 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.9
Q ss_pred cCCceeEEEeccCCCCcceec
Q 001669 79 QGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 79 ~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
.|++-+|+..|++|+|||..+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999866
No 464
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=48.55 E-value=16 Score=35.48 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=19.1
Q ss_pred hhhhhHHHhhcCC----ceeEEEeccCCCCcceec
Q 001669 69 CIAPLVDGLFQGY----NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 69 ~~~plv~~~l~G~----n~ti~ayG~tgSGKT~Tm 99 (1034)
.+...|.+.+... .-.+--.|+||+||||+-
T Consensus 36 ~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 36 VVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH
Confidence 3444455555432 223445799999999974
No 465
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=48.53 E-value=23 Score=43.59 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=17.1
Q ss_pred CCceeEEEeccCCCCcceec
Q 001669 80 GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 80 G~n~ti~ayG~tgSGKT~Tm 99 (1034)
-....|+-||+.|+||||..
T Consensus 699 r~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred ccccceEEECCCCCcHHHHH
Confidence 44667999999999999976
No 466
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=48.50 E-value=15 Score=39.48 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=22.9
Q ss_pred HHHHHHhhhhhHHHhhc-CCceeEEEeccCCCCcceec
Q 001669 63 SAMFDECIAPLVDGLFQ-GYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 63 ~~v~~~~~~plv~~~l~-G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+.+|...+.-+...+-. |..-.|.-.|++|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34444444443333322 55556777899999999876
No 467
>PF05729 NACHT: NACHT domain
Probab=48.49 E-value=7.7 Score=38.63 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.2
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
.|+.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4788999999999987
No 468
>PF15456 Uds1: Up-regulated During Septation
Probab=48.43 E-value=2.7e+02 Score=27.07 Aligned_cols=48 Identities=25% Similarity=0.176 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 859 CQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQAVAIT 906 (1034)
Q Consensus 859 ~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~~~~~l 906 (1034)
....+.+.++.++.++++++...+.+++....++.+.|-+.-.++-.+
T Consensus 74 ~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~AavL~l 121 (124)
T PF15456_consen 74 ESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTAAVLQL 121 (124)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666778888889999998888888888888888887776665443
No 469
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=48.36 E-value=6.8 Score=38.74 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.2
Q ss_pred EEEeccCCCCcceec
Q 001669 85 VLAYGQTGSGKTYTM 99 (1034)
Q Consensus 85 i~ayG~tgSGKT~Tm 99 (1034)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999976
No 470
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=48.05 E-value=2e+02 Score=25.56 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 001669 566 DGQTQKLQDVHAHKLKSLEAQIL 588 (1034)
Q Consensus 566 ~~~~~kl~~~~e~kl~eLe~ql~ 588 (1034)
.....+++..|+.++..|..+|.
T Consensus 52 E~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 52 EQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778777777777753
No 471
>CHL00176 ftsH cell division protein; Validated
Probab=48.02 E-value=7.4 Score=48.40 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=15.1
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999986
No 472
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=48.01 E-value=12 Score=40.35 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=22.3
Q ss_pred hhhhHHHhhc-CC--ceeEEEeccCCCCcceec
Q 001669 70 IAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 70 ~~plv~~~l~-G~--n~ti~ayG~tgSGKT~Tm 99 (1034)
.-|-+|.++. |+ .++++.+|++|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3455677765 43 678888999999998765
No 473
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.01 E-value=89 Score=29.45 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001669 406 DEVQVLKERIAWLEAANEDLCRELHEYRSRCTDVEQ 441 (1034)
Q Consensus 406 ~~~~~L~e~i~~Le~en~~L~~el~~~~e~~~~l~~ 441 (1034)
.++..|+..+..|.++|..|..+...+++++.....
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455668888999999999999999998888876654
No 474
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.96 E-value=4.8e+02 Score=30.23 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=4.2
Q ss_pred ccCCCchhh
Q 001669 317 VPYRDSKLT 325 (1034)
Q Consensus 317 iPyRdSkLT 325 (1034)
+-|=-|||.
T Consensus 87 ~df~p~kLk 95 (359)
T PF10498_consen 87 VDFPPSKLK 95 (359)
T ss_pred CCCChHHhh
Confidence 334445554
No 475
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=47.76 E-value=1.2e+02 Score=28.66 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 849 YMFNSLADARCQLWEKDIEIKEMKEQLKELVGLLRQSEVRRKEVEEELKLREQ 901 (1034)
Q Consensus 849 ~l~~~~~~~r~ql~e~~~~l~e~~~~~~el~~~~~~le~e~~el~~~l~~~e~ 901 (1034)
.+|+.+.....++..+-.++.+++..+.+|...-..|..++..|.+.+.+.++
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555556777777777777777777766666666666666666665554
No 476
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=47.71 E-value=6.3e+02 Score=31.21 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001669 666 KLQALNQRQKLVLQRKTEEAAMATKRLKELLESRK 700 (1034)
Q Consensus 666 ~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k 700 (1034)
.+..+++.+.+-...++.++...++.|...+..+.
T Consensus 364 ~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 364 EIKEKVEQERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777777777777666443
No 477
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.64 E-value=2.7e+02 Score=35.81 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=6.6
Q ss_pred CCCccCHHHHHHHHHH
Q 001669 345 SPADINAEETLNTLKY 360 (1034)
Q Consensus 345 sp~~~~~~eTl~TL~f 360 (1034)
.|....=.-++.|+-.
T Consensus 334 GpN~gGKTt~lktigl 349 (782)
T PRK00409 334 GPNTGGKTVTLKTLGL 349 (782)
T ss_pred CCCCCCcHHHHHHHHH
Confidence 3433333334444443
No 478
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=47.53 E-value=9.8 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=17.7
Q ss_pred HHhhcCCceeEEEeccCCCCcceec
Q 001669 75 DGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 75 ~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
..++.|.|. ++.++||||||.+.
T Consensus 40 p~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 40 PLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHhCCCcE--EEECCCCchHHHHH
Confidence 345788874 56779999999864
No 479
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=47.42 E-value=15 Score=46.95 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=29.5
Q ss_pred ceeeeceeeCCCCCChHHHHHHhhhhhHH-HhhcCC----ceeEEEeccCCCCcceec
Q 001669 47 HSFTFDHVYGSTGSPSSAMFDECIAPLVD-GLFQGY----NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 47 ~~f~FD~Vf~~~~~~q~~v~~~~~~plv~-~~l~G~----n~ti~ayG~tgSGKT~Tm 99 (1034)
..++||.|-|-. ..-..+.+.+..|+-. .++..+ ...|+-||++|||||+.+
T Consensus 173 ~~~~~~di~G~~-~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLK-EAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 347788876532 2123444433333322 222222 346889999999999865
No 480
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=47.37 E-value=13 Score=39.78 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=22.2
Q ss_pred hhhHHHhhc-CC--ceeEEEeccCCCCcceec
Q 001669 71 APLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 71 ~plv~~~l~-G~--n~ti~ayG~tgSGKT~Tm 99 (1034)
-|-+|.++. |+ ...++.||++|||||...
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 355777775 43 557889999999999876
No 481
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=47.31 E-value=7.8 Score=40.03 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 44567899999999877
No 482
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.18 E-value=7.8 Score=45.86 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=14.7
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
.+|+..|+||+|||+|+
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36677799999999998
No 483
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.90 E-value=6e+02 Score=30.69 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001669 645 SREKELLQLRKEGRRNEYERHKLQALNQRQ 674 (1034)
Q Consensus 645 ~~eke~~qLk~e~rk~e~el~~Lq~~~e~q 674 (1034)
++.+|+.-+-++.+-+..-+..+..+..+|
T Consensus 659 dFk~Elq~~~~~~~~L~~~iET~~~~~~KQ 688 (741)
T KOG4460|consen 659 DFKKELQLIPDQLRHLGNAIETVTMKKDKQ 688 (741)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 484
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=46.90 E-value=4.6e+02 Score=29.38 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 001669 630 HRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAV 709 (1034)
Q Consensus 630 rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~ 709 (1034)
..+...+.+........++++...+......+.+...+..........+..+.......+..|++.++..+
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~--------- 256 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEER--------- 256 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001669 710 TNGNLTNGQSNEKSFQRWLDHELEVMV-NVHEVRFDYEK-QSQVRAALAEELAVLK 763 (1034)
Q Consensus 710 ~~~~~~~~~~~~~~~k~wl~~ElE~~~-~l~e~~~~~~~-~~e~r~~l~~EL~~L~ 763 (1034)
+.|..+.-..+. ++.+...-+.. +......+..|+..|+
T Consensus 257 ---------------~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 257 ---------------EQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 485
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=46.85 E-value=12 Score=42.31 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=21.4
Q ss_pred hHHHhhcCCceeEEEeccCCCCcceec
Q 001669 73 LVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 73 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
+.+.-..+-+.-++-||..|||||.||
T Consensus 14 l~~~~~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 14 LKEADKSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred HHHhcccCCceEEEEECCCCCCHHHHH
Confidence 333344567788999999999999998
No 486
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=46.83 E-value=13 Score=40.08 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=25.0
Q ss_pred eeEEEeccCCCCcceec------cCCCC--CCCCcccHhHHHHHHHHHHHh
Q 001669 83 ATVLAYGQTGSGKTYTM------GTGFK--DGYQTGIIPLVMNVLFSKIET 125 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm------~g~~~--~~~~~Glipr~~~~LF~~i~~ 125 (1034)
.+-..+|++|+|||.|+ .|-+- -...+++=..++..||..+-.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 33456999999999998 22110 012345556666667665544
No 487
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.77 E-value=6e+02 Score=30.70 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=14.5
Q ss_pred hHHHHhhhHHhHHHHHHhhc
Q 001669 288 GVHINRGLLALGNVISALGD 307 (1034)
Q Consensus 288 ~~~IN~SL~aL~~vi~aL~~ 307 (1034)
+-.|+.||..|.++...++.
T Consensus 212 ~~c~~~sl~~l~~~~~k~a~ 231 (518)
T PF10212_consen 212 NECILSSLVSLTNGTGKIAA 231 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHH
Confidence 34677888888887777764
No 488
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.76 E-value=3.1e+02 Score=28.57 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001669 598 VQLLKQKQKSDEAAKRLQDEIQFIKAQKV 626 (1034)
Q Consensus 598 ~~l~k~k~k~ee~~~~Le~ei~~~K~~k~ 626 (1034)
.++.+.....+..+..++..|+..+..|.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~~r~ 100 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKKGRE 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444444444455555555555544443
No 489
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.64 E-value=2.2e+02 Score=33.90 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001669 617 EIQFIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQA 669 (1034)
Q Consensus 617 ei~~~K~~k~~l~rkl~~E~~~~r~~k~~~eke~~qLk~e~rk~e~el~~Lq~ 669 (1034)
+-++++++......++...+...+ .++.++..+|+.+..+....+..|+.
T Consensus 88 eN~~L~~r~~~id~~i~~av~~~~---~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 88 ENERLQKREQSIDQQIQQAVQSET---QELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443322 33444555555554444444444443
No 490
>PRK08118 topology modulation protein; Reviewed
Probab=46.59 E-value=8.7 Score=39.20 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.2
Q ss_pred EEEeccCCCCccee
Q 001669 85 VLAYGQTGSGKTYT 98 (1034)
Q Consensus 85 i~ayG~tgSGKT~T 98 (1034)
|+..|++|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999964
No 491
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.58 E-value=16 Score=42.58 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=15.5
Q ss_pred eeEEEeccCCCCcceec
Q 001669 83 ATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm 99 (1034)
..|+-.|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57888999999999998
No 492
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.46 E-value=1.3e+02 Score=33.98 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=6.2
Q ss_pred HHhHHHHHHHHHHHHH
Q 001669 604 KQKSDEAAKRLQDEIQ 619 (1034)
Q Consensus 604 k~k~ee~~~~Le~ei~ 619 (1034)
+..+|++...|+..+.
T Consensus 255 ~etLEqq~~~L~~niD 270 (365)
T KOG2391|consen 255 KETLEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHHHHHHHhhhH
Confidence 3333443333333333
No 493
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=46.26 E-value=8.4 Score=45.44 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.0
Q ss_pred ceeEEEeccCCCCcceec
Q 001669 82 NATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 82 n~ti~ayG~tgSGKT~Tm 99 (1034)
+.-++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 445788999999999876
No 494
>PF14282 FlxA: FlxA-like protein
Probab=46.15 E-value=1.5e+02 Score=27.86 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 534 GKKIAELEDEKRTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQ 599 (1034)
Q Consensus 534 e~ki~eLe~ei~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~ 599 (1034)
...|..|+.+|..|++++..|... ...+.+........+...+..|+.+|..|+........
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~----~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD----SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=46.13 E-value=5.7e+02 Score=30.24 Aligned_cols=303 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCccEEEeEEeEeeCCCCccccccCCchhhhhhh----HHHHhhhHHhHHHHHHhhccccCCCCccccCCCc--------
Q 001669 255 MNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEG----VHINRGLLALGNVISALGDDKKRKEGVHVPYRDS-------- 322 (1034)
Q Consensus 255 ~~~~~~~s~l~~VDLAGsEr~~~t~~~g~r~kE~----~~IN~SL~aL~~vi~aL~~~~~~~~~~~iPyRdS-------- 322 (1034)
.+..+..+--.+||-.++.........|...... ..|=+|=..+..|+..|.-.. +.+|...
T Consensus 35 ~~p~Y~a~a~l~v~~~~~~~~~~~~~~~~~~~~~i~tq~~il~S~~v~~~Vi~~l~l~~------~~~~~~~~~~~~~~~ 108 (444)
T TIGR03017 35 LPKEYTATTSVVLDYKGPDPVTGMVLPGQMSPGYMATQVDIINSDRVAKKVVDKLKLDE------NPAVKEKFEEATGGQ 108 (444)
T ss_pred CCceeEEEEEEEEecCCCCCcceeeccCcccHHHHHHHHHHHHHHHHHHHHHHHcCCCC------Ccchhhhhhhccccc
Q ss_pred ---------hhhhhhhhcCCCCceeEEEeecCCCccCHHHHHHHHHHHHHHhcccCCcccccCCccHHHHHHHHHHHHHH
Q 001669 323 ---------KLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPIVNRDPMSTEMLKMRQQLEFLQ 393 (1034)
Q Consensus 323 ---------kLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~fa~rar~I~~kp~vN~d~~~~ei~~Lr~ql~~L~ 393 (1034)
.|-.-|.=...+++.++-|..-+|++.-...-.+++-=+-...++ -.+.+....-+.-|..++..++
T Consensus 109 ~~~~~~~~~~l~~~l~v~~~~~s~ii~is~~~~dp~~A~~i~n~~~~~y~~~~~----~~~~~~~~~~~~fl~~ql~~~~ 184 (444)
T TIGR03017 109 GSLKEWLADLLLKKLEVKPSRESSVISIEFSGVDPRFAATVANAFAQAYIDTNI----ELKVEPAQKAALWFVQQIAALR 184 (444)
T ss_pred chHHHHHHHHHHhCCeEEecCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHhhhhhcCCCCcccHHHHHHHhh
Q 001669 394 AELCARGGGSSSDEVQVLKERIAWL---------EAANEDLCRELHEYRSRCTDVEQRETDAQDGSPCPLKSDGLKRSLN 464 (1034)
Q Consensus 394 ~eL~~~~~~~~~~~~~~L~e~i~~L---------e~en~~L~~el~~~~e~~~~l~~~~~~~~~~~~l~~~i~eLe~~L~ 464 (1034)
.+|.. ....+...+++...+ ..+...+..++...+........+..
T Consensus 185 ~~l~~-----ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~-------------------- 239 (444)
T TIGR03017 185 EDLAR-----AQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEG-------------------- 239 (444)
T ss_pred HHHHH-----HHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------
Q ss_pred hhhcccccccccCCCCChhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 001669 465 SIEQTDYQMGENITGDSREIDEVAKEWEHTLLQNSMDKELNELNRRLEEKESEMKLVGGSDTAALKQHFGKKIAELEDEK 544 (1034)
Q Consensus 465 ~~~~~~~~~~e~~~~~~~~~ee~~~e~E~~~~q~~l~~el~eL~~~L~~kE~el~~l~~~~~~~lk~~~e~ki~eLe~ei 544 (1034)
..+.....-.-.-...+..|..++...+.++..+. ....+-.-.+
T Consensus 240 -----------------------~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~------------~~y~~~hP~v 284 (444)
T TIGR03017 240 -----------------------GSSGKDALPEVIANPIIQNLKTDIARAESKLAELS------------QRLGPNHPQY 284 (444)
T ss_pred -----------------------ccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHH------------HHhCCCCcHH
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001669 545 RTVQKERDHLLTEIENLASNSDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQ 624 (1034)
Q Consensus 545 ~~l~~e~~~L~~el~~~~~~~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~ 624 (1034)
..++..++.+...+... ..++..........+..++.+|+...+.+..-...-...+.....|+.+++--+..
T Consensus 285 ~~l~~~i~~l~~~l~~e-------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~ 357 (444)
T TIGR03017 285 KRAQAEINSLKSQLNAE-------IKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRA 357 (444)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 001669 625 KVQLQHRIKQ 634 (1034)
Q Consensus 625 k~~l~rkl~~ 634 (1034)
...+..+.++
T Consensus 358 y~~ll~r~~e 367 (444)
T TIGR03017 358 YDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHH
No 496
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.02 E-value=5.5e+02 Score=30.03 Aligned_cols=252 Identities=18% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001669 573 QDVHAHKLKSLEAQILDLKK----KQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQ---HRIKQEAEQFRQWKAS 645 (1034)
Q Consensus 573 ~~~~e~kl~eLe~ql~dL~~----k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~---rkl~~E~~~~r~~k~~ 645 (1034)
+.++..++.-|++++.+|-. ..+...++...-..+.-....|+.....-.-...+.+ .++..|+--..+-.+.
T Consensus 217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReas 296 (502)
T KOG0982|consen 217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREAS 296 (502)
T ss_pred hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCccccccc
Q 001669 646 REKEL-----LQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSN 720 (1034)
Q Consensus 646 ~eke~-----~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~ 720 (1034)
+++|. .+|..+.......+..|....+++..-.+|-...+.+...+|..+.+.++
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~-------------------- 356 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRV-------------------- 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCCCCccccchhhhcCChHHHHHHHHHH
Q 001669 721 EKSFQRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEELAVLKQVDEFASKGLSPPRGKNGFARVSSMSPNARMARISSL 800 (1034)
Q Consensus 721 ~~~~k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~EL~~L~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~L 800 (1034)
...+.+.+..+-..++..++++-.+--.-+...+-..+-...++++ +...+|
T Consensus 357 ---------rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsS-------------------aRe~el 408 (502)
T KOG0982|consen 357 ---------RMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSS-------------------AREIEL 408 (502)
T ss_pred ---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh-------------------HHHHHH
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhccccchhhcccHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001669 801 ENMLSISSNSLVAMASQLSEAEERDRLFTNRGRWNQLRSMADAKN--LLQYMFNSLADARCQLWEK-DIEIKEMKEQLKE 877 (1034)
Q Consensus 801 e~~~~~~~~~~~~l~~~l~e~e~~~~~~~~~~~~~~irsl~eak~--~l~~l~~~~~~~r~ql~e~-~~~l~e~~~~~~e 877 (1034)
+.+...+-..---|..|-.++.-..-+. ++..+++ +..-++..++. .+.+. +.+|.++=....+
T Consensus 409 eqevkrLrq~nr~l~eqneelngtilTl----------s~q~lkn~ha~~~~~~Slaa---eid~~sqdeLmqafqeqee 475 (502)
T KOG0982|consen 409 EQEVKRLRQPNRILSEQNEELNGTILTL----------STQFLKNWHATFSLFFSLAA---EIDEMSQDELMQAFQEQEE 475 (502)
T ss_pred HHHHHHhccccchhhhhhhhhhhhhhhH----------HHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 001669 878 LVGLLRQS 885 (1034)
Q Consensus 878 l~~~~~~l 885 (1034)
.+-+++..
T Consensus 476 iNfRL~~y 483 (502)
T KOG0982|consen 476 INFRLKFY 483 (502)
T ss_pred hhhHHHHH
No 497
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=45.98 E-value=11 Score=42.69 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred eeeceeeCCCCCChHHHHHHhhhhhHHHhhcCCceeEEEeccCCCCcceec
Q 001669 49 FTFDHVYGSTGSPSSAMFDECIAPLVDGLFQGYNATVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 49 f~FD~Vf~~~~~~q~~v~~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 99 (1034)
|.-.+.|-|...+.-.+=..++..++..+..|.+ |+-+|++|+|||...
T Consensus 33 f~~~~~~~p~~d~~y~f~~~~~~~vl~~l~~~~~--ilL~G~pGtGKTtla 81 (327)
T TIGR01650 33 FSHRDEHVPDIDPAYLFDKATTKAICAGFAYDRR--VMVQGYHGTGKSTHI 81 (327)
T ss_pred cCCCCCCCCCCCCCccCCHHHHHHHHHHHhcCCc--EEEEeCCCChHHHHH
No 498
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=45.95 E-value=14 Score=40.40 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=0.0
Q ss_pred eeEEEeccCCCCcceeccCCCCCCCCcccHhHHHHHHHHH
Q 001669 83 ATVLAYGQTGSGKTYTMGTGFKDGYQTGIIPLVMNVLFSK 122 (1034)
Q Consensus 83 ~ti~ayG~tgSGKT~Tm~g~~~~~~~~Glipr~~~~LF~~ 122 (1034)
+||++.|-.|||||+.| .|...+|+..
T Consensus 20 ~~ilVvGMAGSGKTTF~-------------QrL~~hl~~~ 46 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFM-------------QRLNSHLHAK 46 (366)
T ss_pred cEEEEEecCCCCchhHH-------------HHHHHHHhhc
No 499
>PRK00106 hypothetical protein; Provisional
Probab=45.92 E-value=6.5e+02 Score=30.83 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 565 SDGQTQKLQDVHAHKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQHRIKQEAEQFRQWKA 644 (1034)
Q Consensus 565 ~~~~~~kl~~~~e~kl~eLe~ql~dL~~k~~~~~~l~k~k~k~ee~~~~Le~ei~~~K~~k~~l~rkl~~E~~~~r~~k~ 644 (1034)
....++++.++.+.+-+.+..+ -..+.+....+.....+.++...+..-.+..+.-+.++.+......
T Consensus 40 A~~~A~~IleeAe~eAe~I~ke------------A~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~ 107 (535)
T PRK00106 40 AEQEAVNLRGKAERDAEHIKKT------------AKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLT 107 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCcccccccHHHH
Q 001669 645 SREKELLQLRKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLESRKSSARENSAVTNGNLTNGQSNEKSF 724 (1034)
Q Consensus 645 ~~eke~~qLk~e~rk~e~el~~Lq~~~e~q~~vlkrk~eE~~a~~k~Lke~le~~k~~~r~~~~~~~~~~~~~~~~~~~~ 724 (1034)
.++..+.+-...+.+.+.++...+..++..+.-|..+.+++..........|+. -.....+..
T Consensus 108 qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~-----------------~a~lt~~ea 170 (535)
T PRK00106 108 ERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER-----------------VAALSQAEA 170 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhCCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001669 725 QRWLDHELEVMVNVHEVRFDYEKQSQVRAALAEE 758 (1034)
Q Consensus 725 k~wl~~ElE~~~~l~e~~~~~~~~~e~r~~l~~E 758 (1034)
+.-+-..++.-.+-+-+..-.....+.+.....+
T Consensus 171 k~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~ 204 (535)
T PRK00106 171 REIILAETENKLTHEIATRIREAEREVKDRSDKM 204 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.89 E-value=8.2 Score=46.18 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=0.0
Q ss_pred eEEEeccCCCCcceec
Q 001669 84 TVLAYGQTGSGKTYTM 99 (1034)
Q Consensus 84 ti~ayG~tgSGKT~Tm 99 (1034)
.|.-.|++|+|||+|+
T Consensus 258 Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 258 VFALMGPTGVGKTTTT 273 (484)
T ss_pred EEEEECCCCccHHHHH
Done!