Query 001670
Match_columns 1034
No_of_seqs 473 out of 2881
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 06:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0250 DNA repair protein RAD 100.0 7E-110 2E-114 898.1 112.7 1005 15-1033 35-1050(1074)
2 COG1196 Smc Chromosome segrega 100.0 2.1E-87 4.5E-92 808.8 112.4 969 20-1033 1-1125(1163)
3 KOG0933 Structural maintenance 100.0 2.1E-78 4.6E-83 639.1 90.9 977 20-1033 1-1141(1174)
4 KOG0964 Structural maintenance 100.0 1.5E-77 3.3E-82 629.2 96.8 977 20-1032 1-1155(1200)
5 KOG0979 Structural maintenance 100.0 8.1E-78 1.8E-82 638.8 95.5 956 12-1033 12-1023(1072)
6 KOG0996 Structural maintenance 100.0 2.9E-74 6.2E-79 619.4 101.0 985 15-1033 79-1254(1293)
7 KOG0018 Structural maintenance 100.0 4E-70 8.6E-75 583.5 97.9 962 19-1033 1-1108(1141)
8 TIGR02169 SMC_prok_A chromosom 100.0 2.2E-68 4.7E-73 672.0 112.2 968 21-1033 1-1133(1164)
9 TIGR02168 SMC_prok_B chromosom 100.0 1.4E-58 2.9E-63 586.6 116.7 982 21-1033 1-1148(1179)
10 PRK02224 chromosome segregatio 100.0 4.8E-43 1E-47 421.3 101.0 157 20-192 1-165 (880)
11 PRK03918 chromosome segregatio 100.0 7.6E-39 1.6E-43 386.8 104.1 183 20-216 1-185 (880)
12 PRK01156 chromosome segregatio 100.0 2.2E-37 4.7E-42 371.2 103.7 176 20-211 1-184 (895)
13 COG0419 SbcC ATPase involved i 100.0 6E-35 1.3E-39 346.3 96.7 186 20-217 1-195 (908)
14 PRK04863 mukB cell division pr 100.0 2.5E-32 5.5E-37 324.8 102.9 89 944-1034 1337-1435(1486)
15 TIGR00606 rad50 rad50. This fa 100.0 2.5E-32 5.5E-37 335.4 89.9 172 21-208 2-201 (1311)
16 PRK10246 exonuclease subunit S 100.0 2.8E-28 6.1E-33 291.0 102.5 186 20-216 1-207 (1047)
17 TIGR00618 sbcc exonuclease Sbc 100.0 4E-27 8.7E-32 284.4 99.3 187 20-217 1-204 (1042)
18 TIGR02680 conserved hypothetic 100.0 6.9E-23 1.5E-27 249.5 98.3 79 21-99 3-95 (1353)
19 PHA02562 46 endonuclease subun 100.0 1.1E-25 2.4E-30 257.8 43.5 198 19-233 1-207 (562)
20 COG4913 Uncharacterized protei 100.0 1.7E-19 3.6E-24 186.2 81.8 112 8-128 3-145 (1104)
21 KOG0962 DNA repair protein RAD 99.9 5.4E-19 1.2E-23 199.4 78.2 164 19-194 1-189 (1294)
22 TIGR00634 recN DNA repair prot 99.9 4.7E-22 1E-26 222.6 41.4 191 21-234 1-202 (563)
23 PRK10869 recombination and rep 99.9 1.3E-21 2.8E-26 215.5 43.0 186 21-233 1-197 (553)
24 COG4717 Uncharacterized conser 99.9 2.4E-16 5.2E-21 167.9 76.0 116 20-150 1-117 (984)
25 COG1196 Smc Chromosome segrega 99.9 3E-17 6.6E-22 200.2 78.5 74 162-240 153-226 (1163)
26 PF13514 AAA_27: AAA domain 99.9 1E-15 2.2E-20 186.8 83.3 103 921-1033 979-1088(1111)
27 TIGR02169 SMC_prok_A chromosom 99.9 5.5E-16 1.2E-20 196.6 81.6 54 871-927 985-1038(1164)
28 PF12128 DUF3584: Protein of u 99.9 2.8E-14 6E-19 174.4 92.0 49 37-86 13-65 (1201)
29 TIGR03185 DNA_S_dndD DNA sulfu 99.9 6.7E-19 1.5E-23 201.4 49.1 148 20-174 1-166 (650)
30 KOG0996 Structural maintenance 99.9 1.5E-13 3.4E-18 151.6 75.9 156 281-437 440-599 (1293)
31 COG0497 RecN ATPase involved i 99.8 1E-17 2.2E-22 175.6 36.2 137 22-172 2-147 (557)
32 cd03273 ABC_SMC2_euk Eukaryoti 99.8 4.5E-20 9.9E-25 185.5 17.1 148 20-172 1-156 (251)
33 KOG0250 DNA repair protein RAD 99.8 4.3E-13 9.3E-18 148.6 72.1 249 188-436 216-464 (1074)
34 KOG0933 Structural maintenance 99.8 2.6E-13 5.7E-18 147.0 67.6 61 174-234 225-285 (1174)
35 TIGR02168 SMC_prok_B chromosom 99.8 2.3E-13 5.1E-18 173.7 79.3 169 196-364 168-336 (1179)
36 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.3E-18 2.8E-23 173.9 17.8 139 22-175 1-146 (247)
37 COG0497 RecN ATPase involved i 99.8 1.1E-15 2.4E-20 160.5 36.9 178 846-1033 296-490 (557)
38 PF02463 SMC_N: RecF/RecN/SMC 99.8 2E-18 4.3E-23 170.9 15.0 127 21-155 1-135 (220)
39 KOG0964 Structural maintenance 99.8 2E-10 4.3E-15 124.6 69.9 104 336-440 396-499 (1200)
40 cd03241 ABC_RecN RecN ATPase i 99.7 6.2E-18 1.3E-22 171.8 12.5 115 22-149 1-122 (276)
41 PRK14079 recF recombination pr 99.7 1.6E-16 3.4E-21 165.9 23.0 123 20-170 1-123 (349)
42 cd03242 ABC_RecF RecF is a rec 99.7 5.4E-17 1.2E-21 164.3 18.6 100 22-137 1-101 (270)
43 cd03277 ABC_SMC5_euk Eukaryoti 99.7 8.7E-18 1.9E-22 161.9 11.7 80 20-99 1-80 (213)
44 PRK00064 recF recombination pr 99.7 3.2E-16 7E-21 164.7 23.1 111 20-147 1-112 (361)
45 COG3096 MukB Uncharacterized p 99.7 7.1E-10 1.5E-14 116.3 76.1 49 18-66 3-51 (1480)
46 PRK10869 recombination and rep 99.7 6.1E-14 1.3E-18 155.2 37.5 178 846-1033 295-489 (553)
47 PRK02224 chromosome segregatio 99.7 9.5E-10 2.1E-14 133.6 77.2 102 923-1033 739-850 (880)
48 cd03272 ABC_SMC3_euk Eukaryoti 99.7 2.2E-16 4.8E-21 159.1 14.7 142 22-172 1-148 (243)
49 cd03239 ABC_SMC_head The struc 99.7 7.9E-17 1.7E-21 150.2 8.5 78 22-99 1-82 (178)
50 PF13555 AAA_29: P-loop contai 99.7 6.6E-17 1.4E-21 115.1 6.0 49 22-70 1-51 (62)
51 TIGR00634 recN DNA repair prot 99.6 6.1E-13 1.3E-17 149.6 35.8 178 846-1033 300-499 (563)
52 TIGR00611 recf recF protein. A 99.6 5.9E-14 1.3E-18 146.9 24.3 78 20-100 1-78 (365)
53 cd03276 ABC_SMC6_euk Eukaryoti 99.6 9E-16 2E-20 146.5 9.3 80 22-101 1-80 (198)
54 KOG0018 Structural maintenance 99.6 4.1E-08 8.9E-13 109.0 67.1 42 488-536 590-631 (1141)
55 KOG0161 Myosin class II heavy 99.6 2.4E-08 5.3E-13 121.4 69.7 64 639-702 1245-1308(1930)
56 KOG0979 Structural maintenance 99.6 5.5E-09 1.2E-13 114.9 57.1 178 186-363 181-358 (1072)
57 COG1195 RecF Recombinational D 99.6 4.9E-14 1.1E-18 141.2 16.9 123 20-168 1-124 (363)
58 KOG0161 Myosin class II heavy 99.6 1.7E-07 3.7E-12 114.4 74.9 29 877-905 1454-1482(1930)
59 PF13476 AAA_23: AAA domain; P 99.5 2.7E-14 5.8E-19 140.8 10.9 49 24-72 1-49 (202)
60 TIGR03185 DNA_S_dndD DNA sulfu 99.5 4.3E-10 9.4E-15 129.4 44.2 104 919-1033 503-610 (650)
61 PHA02562 46 endonuclease subun 99.5 1.6E-10 3.5E-15 133.0 39.7 100 923-1033 425-533 (562)
62 cd03279 ABC_sbcCD SbcCD and ot 99.5 7.9E-14 1.7E-18 136.1 10.1 90 20-119 1-95 (213)
63 cd03240 ABC_Rad50 The catalyti 99.5 2.4E-13 5.1E-18 130.8 11.1 90 22-120 1-92 (204)
64 PRK04863 mukB cell division pr 99.4 4.6E-06 1E-10 102.3 77.4 52 19-70 4-55 (1486)
65 cd03278 ABC_SMC_barmotin Barmo 99.4 1.9E-12 4.1E-17 123.6 8.5 78 22-99 1-85 (197)
66 TIGR00606 rad50 rad50. This fa 99.3 2.9E-06 6.2E-11 106.5 64.5 111 919-1033 1138-1266(1311)
67 PRK03918 chromosome segregatio 99.3 1.4E-05 3E-10 98.0 76.6 64 968-1033 783-850 (880)
68 cd03274 ABC_SMC4_euk Eukaryoti 99.3 1E-11 2.2E-16 120.0 8.4 78 20-98 1-85 (212)
69 PF12128 DUF3584: Protein of u 99.2 4.7E-05 1E-09 94.5 76.4 69 636-704 604-672 (1201)
70 PF02463 SMC_N: RecF/RecN/SMC 99.2 1.3E-11 2.9E-16 122.2 5.7 59 972-1033 135-195 (220)
71 KOG4674 Uncharacterized conser 99.2 4.7E-05 1E-09 91.9 66.1 106 639-748 1236-1341(1822)
72 PF11398 DUF2813: Protein of u 99.1 3.2E-09 6.9E-14 109.0 17.3 77 20-99 1-83 (373)
73 COG3950 Predicted ATP-binding 99.1 5.1E-11 1.1E-15 114.6 3.1 49 20-68 1-50 (440)
74 cd03227 ABC_Class2 ABC-type Cl 99.0 4.6E-10 9.9E-15 104.0 5.5 69 24-96 1-71 (162)
75 PRK04778 septation ring format 98.9 3.8E-05 8.2E-10 86.9 43.7 76 850-930 451-526 (569)
76 PRK01156 chromosome segregatio 98.9 0.00097 2.1E-08 81.6 75.5 66 968-1033 796-866 (895)
77 PF00261 Tropomyosin: Tropomyo 98.8 1.2E-05 2.5E-10 79.3 30.5 88 713-800 56-143 (237)
78 PF00261 Tropomyosin: Tropomyo 98.7 4.9E-05 1.1E-09 74.9 31.1 52 387-438 176-227 (237)
79 PF13166 AAA_13: AAA domain 98.7 0.00018 3.8E-09 85.9 42.0 42 29-70 1-44 (712)
80 KOG0994 Extracellular matrix g 98.6 0.0028 6E-08 71.8 50.1 6 3-8 897-902 (1758)
81 COG5293 Predicted ATPase [Gene 98.6 0.0011 2.5E-08 67.0 38.4 50 20-71 4-65 (591)
82 COG1106 Predicted ATPases [Gen 98.6 3.1E-08 6.6E-13 100.9 3.7 47 21-68 1-48 (371)
83 COG4637 Predicted ATPase [Gene 98.6 2.3E-08 5E-13 95.8 2.5 45 20-65 1-45 (373)
84 COG3593 Predicted ATP-dependen 98.6 4.9E-08 1.1E-12 105.1 4.9 50 20-69 1-50 (581)
85 PF04310 MukB: MukB N-terminal 98.6 8.6E-08 1.9E-12 85.3 5.3 49 18-66 3-51 (227)
86 KOG4674 Uncharacterized conser 98.6 0.0069 1.5E-07 74.1 68.8 62 739-800 658-719 (1822)
87 PF10174 Cast: RIM-binding pro 98.5 0.004 8.8E-08 71.1 67.4 26 882-907 572-597 (775)
88 PF13175 AAA_15: AAA ATPase do 98.5 7.6E-08 1.6E-12 107.1 5.6 49 22-70 1-50 (415)
89 COG3910 Predicted ATPase [Gene 98.4 1.8E-07 3.8E-12 82.5 4.3 36 37-72 32-67 (233)
90 PF07888 CALCOCO1: Calcium bin 98.4 0.0036 7.7E-08 67.3 36.7 49 638-686 142-190 (546)
91 PF13166 AAA_13: AAA domain 98.4 0.00048 1E-08 82.1 34.6 100 927-1033 460-567 (712)
92 PF07888 CALCOCO1: Calcium bin 98.4 0.0059 1.3E-07 65.6 37.1 14 994-1007 498-511 (546)
93 TIGR02680 conserved hypothetic 98.3 0.03 6.6E-07 70.6 69.5 58 971-1033 1245-1312(1353)
94 PF06470 SMC_hinge: SMC protei 98.3 2.7E-06 5.9E-11 74.6 8.0 115 474-592 3-119 (120)
95 PRK04778 septation ring format 98.2 0.012 2.7E-07 66.9 37.9 57 176-232 95-151 (569)
96 KOG0971 Microtubule-associated 98.2 0.02 4.4E-07 63.6 36.4 12 973-984 657-668 (1243)
97 COG4674 Uncharacterized ABC-ty 98.2 6.9E-07 1.5E-11 79.4 1.5 40 24-63 12-52 (249)
98 KOG0977 Nuclear envelope prote 98.1 0.0098 2.1E-07 64.0 32.1 28 203-230 45-72 (546)
99 COG4559 ABC-type hemin transpo 98.1 3.4E-06 7.4E-11 76.4 4.8 44 24-67 8-52 (259)
100 PRK11637 AmiB activator; Provi 98.1 0.0031 6.8E-08 69.2 29.0 52 260-311 68-119 (428)
101 PRK11637 AmiB activator; Provi 98.1 0.005 1.1E-07 67.6 30.1 84 217-311 43-126 (428)
102 COG1340 Uncharacterized archae 98.0 0.017 3.7E-07 56.6 31.1 17 886-902 228-244 (294)
103 COG4938 Uncharacterized conser 98.0 4.8E-06 1E-10 78.5 4.3 45 22-67 2-46 (374)
104 PF06160 EzrA: Septation ring 98.0 0.055 1.2E-06 61.3 46.6 109 780-900 382-493 (560)
105 cd03276 ABC_SMC6_euk Eukaryoti 98.0 1.1E-05 2.5E-10 77.3 6.3 65 969-1033 105-171 (198)
106 KOG0977 Nuclear envelope prote 98.0 0.019 4.2E-07 61.9 30.2 11 996-1006 436-446 (546)
107 COG4604 CeuD ABC-type enteroch 98.0 8.9E-06 1.9E-10 72.7 4.6 36 35-70 19-55 (252)
108 COG1120 FepC ABC-type cobalami 97.9 1.4E-05 3.1E-10 77.5 6.0 33 35-67 20-53 (258)
109 KOG0994 Extracellular matrix g 97.9 0.077 1.7E-06 60.9 56.8 50 655-704 1586-1635(1758)
110 PF09726 Macoilin: Transmembra 97.9 0.024 5.3E-07 64.8 32.0 36 406-441 620-655 (697)
111 cd03277 ABC_SMC5_euk Eukaryoti 97.9 2.4E-05 5.2E-10 75.9 7.3 64 970-1033 123-188 (213)
112 PF09726 Macoilin: Transmembra 97.9 0.0075 1.6E-07 68.8 27.8 63 640-702 419-481 (697)
113 KOG1029 Endocytic adaptor prot 97.9 0.062 1.3E-06 58.8 34.3 6 972-977 1037-1042(1118)
114 PF05557 MAD: Mitotic checkpoi 97.9 3.4E-05 7.3E-10 90.5 9.0 16 849-864 568-583 (722)
115 COG1579 Zn-ribbon protein, pos 97.9 0.013 2.8E-07 56.0 23.8 117 637-756 15-131 (239)
116 cd03239 ABC_SMC_head The struc 97.8 3.9E-05 8.3E-10 72.0 6.3 58 974-1033 95-154 (178)
117 PF05667 DUF812: Protein of un 97.8 0.056 1.2E-06 60.5 31.6 59 640-698 322-380 (594)
118 COG1579 Zn-ribbon protein, pos 97.8 0.013 2.8E-07 56.0 22.8 17 427-443 154-170 (239)
119 PRK14242 phosphate transporter 97.8 4E-05 8.6E-10 77.9 6.4 51 16-66 3-56 (253)
120 COG4372 Uncharacterized protei 97.8 0.053 1.2E-06 54.1 31.1 11 146-156 31-41 (499)
121 COG4133 CcmA ABC-type transpor 97.8 2.5E-05 5.5E-10 69.7 4.1 34 33-66 18-52 (209)
122 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 2.4E-05 5.2E-10 75.5 4.2 31 36-66 23-54 (254)
123 PF05667 DUF812: Protein of un 97.7 0.13 2.8E-06 57.7 34.2 54 638-691 327-380 (594)
124 cd03238 ABC_UvrA The excision 97.7 3.4E-05 7.3E-10 71.7 4.2 30 33-62 11-41 (176)
125 cd03215 ABC_Carb_Monos_II This 97.7 5.1E-05 1.1E-09 72.3 5.4 45 20-66 5-50 (182)
126 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 6.1E-05 1.3E-09 68.1 5.5 32 33-64 16-48 (144)
127 PRK14261 phosphate ABC transpo 97.7 6.5E-05 1.4E-09 76.2 6.3 48 19-66 6-56 (253)
128 PRK10584 putative ABC transpor 97.7 8.1E-05 1.8E-09 74.2 6.4 47 19-65 6-59 (228)
129 PRK10744 pstB phosphate transp 97.6 6.8E-05 1.5E-09 76.3 5.8 52 14-65 8-62 (260)
130 PRK13538 cytochrome c biogenes 97.6 8.1E-05 1.7E-09 72.5 6.1 34 33-66 17-51 (204)
131 TIGR01069 mutS2 MutS2 family p 97.6 0.00058 1.3E-08 79.5 14.0 30 36-65 314-345 (771)
132 PRK14265 phosphate ABC transpo 97.6 9.7E-05 2.1E-09 75.6 6.7 52 15-66 16-70 (274)
133 cd03264 ABC_drug_resistance_li 97.6 5.5E-05 1.2E-09 74.4 4.7 32 33-64 16-47 (211)
134 TIGR02315 ABC_phnC phosphonate 97.6 7.6E-05 1.7E-09 75.3 5.9 32 33-64 18-50 (243)
135 COG0396 sufC Cysteine desulfur 97.6 0.0001 2.2E-09 68.4 6.0 30 34-63 21-51 (251)
136 cd00267 ABC_ATPase ABC (ATP-bi 97.6 7.7E-05 1.7E-09 69.1 5.3 34 33-66 15-49 (157)
137 PRK13539 cytochrome c biogenes 97.6 9.4E-05 2E-09 72.2 6.1 33 33-65 18-51 (207)
138 KOG0995 Centromere-associated 97.6 0.15 3.2E-06 54.6 36.0 8 517-524 130-137 (581)
139 cd03262 ABC_HisP_GlnQ_permease 97.6 9E-05 1.9E-09 73.1 5.9 32 33-64 16-48 (213)
140 PF00005 ABC_tran: ABC transpo 97.6 4.4E-05 9.6E-10 69.0 3.4 32 35-66 3-35 (137)
141 TIGR02673 FtsE cell division A 97.6 9.6E-05 2.1E-09 72.9 6.0 32 33-64 18-50 (214)
142 cd03296 ABC_CysA_sulfate_impor 97.6 9.4E-05 2E-09 74.3 5.9 32 33-64 18-50 (239)
143 COG1126 GlnQ ABC-type polar am 97.6 7.3E-05 1.6E-09 68.6 4.3 29 36-64 21-50 (240)
144 PRK11248 tauB taurine transpor 97.6 0.00011 2.3E-09 74.4 6.1 32 33-64 17-49 (255)
145 PF12718 Tropomyosin_1: Tropom 97.6 0.021 4.6E-07 50.6 19.5 40 659-698 20-59 (143)
146 cd03291 ABCC_CFTR1 The CFTR su 97.6 0.00013 2.9E-09 74.2 6.7 46 19-64 39-85 (282)
147 PRK10575 iron-hydroxamate tran 97.6 0.00011 2.4E-09 74.9 6.2 53 11-64 3-59 (265)
148 PRK14247 phosphate ABC transpo 97.6 0.0001 2.2E-09 74.6 5.9 32 33-64 19-51 (250)
149 PRK13638 cbiO cobalt transport 97.6 0.00011 2.4E-09 75.3 6.1 32 33-64 17-49 (271)
150 PRK14238 phosphate transporter 97.6 0.00012 2.6E-09 74.8 6.3 50 17-66 22-74 (271)
151 cd03265 ABC_DrrA DrrA is the A 97.6 0.00011 2.5E-09 72.6 5.9 32 33-64 16-48 (220)
152 PRK11629 lolD lipoprotein tran 97.6 0.00012 2.6E-09 73.1 6.1 46 19-65 5-58 (233)
153 PRK13540 cytochrome c biogenes 97.6 0.00012 2.7E-09 70.9 6.0 32 33-64 17-49 (200)
154 TIGR01166 cbiO cobalt transpor 97.5 7.3E-05 1.6E-09 72.0 4.2 32 33-64 8-40 (190)
155 cd03269 ABC_putative_ATPase Th 97.5 0.00012 2.5E-09 72.0 5.7 33 33-65 16-49 (210)
156 COG0411 LivG ABC-type branched 97.5 2.3E-05 5.1E-10 73.6 0.6 38 29-66 13-54 (250)
157 cd03219 ABC_Mj1267_LivG_branch 97.5 0.00011 2.3E-09 73.9 5.4 32 33-64 16-48 (236)
158 PRK11247 ssuB aliphatic sulfon 97.5 0.00014 3E-09 73.2 6.2 46 19-64 12-60 (257)
159 cd03248 ABCC_TAP TAP, the Tran 97.5 0.00015 3.2E-09 72.2 6.3 49 18-66 10-64 (226)
160 PRK14273 phosphate ABC transpo 97.5 0.00015 3.2E-09 73.7 6.4 45 20-64 8-55 (254)
161 cd03224 ABC_TM1139_LivF_branch 97.5 0.00012 2.5E-09 72.9 5.5 31 33-63 16-47 (222)
162 cd03230 ABC_DR_subfamily_A Thi 97.5 0.00014 3.1E-09 68.5 5.8 32 33-64 16-48 (173)
163 PRK13541 cytochrome c biogenes 97.5 0.00015 3.2E-09 70.0 5.9 31 36-66 19-50 (195)
164 cd03261 ABC_Org_Solvent_Resist 97.5 0.00013 2.8E-09 73.1 5.7 44 20-63 1-47 (235)
165 PRK13648 cbiO cobalt transport 97.5 0.00018 3.8E-09 73.6 6.7 45 19-64 7-57 (269)
166 PRK14264 phosphate ABC transpo 97.5 0.00018 3.8E-09 74.8 6.8 45 20-64 46-93 (305)
167 cd03283 ABC_MutS-like MutS-lik 97.5 8.5E-05 1.9E-09 71.2 4.1 29 36-64 18-47 (199)
168 PRK14262 phosphate ABC transpo 97.5 0.00015 3.1E-09 73.6 6.0 34 33-66 19-53 (250)
169 PRK09493 glnQ glutamine ABC tr 97.5 0.00015 3.2E-09 72.9 6.0 33 33-65 17-50 (240)
170 TIGR00960 3a0501s02 Type II (G 97.5 0.00016 3.5E-09 71.4 6.1 33 33-65 19-52 (216)
171 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 0.00015 3.2E-09 72.7 5.9 31 33-63 17-48 (236)
172 cd03268 ABC_BcrA_bacitracin_re 97.5 0.00015 3.2E-09 71.1 5.8 32 33-64 16-48 (208)
173 PRK14245 phosphate ABC transpo 97.5 0.00014 3E-09 73.6 5.8 49 19-67 3-54 (250)
174 PRK13547 hmuV hemin importer A 97.5 0.00015 3.2E-09 73.8 5.9 33 33-65 17-50 (272)
175 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 8.7E-05 1.9E-09 73.4 4.1 31 33-63 20-51 (218)
176 PRK14243 phosphate transporter 97.5 0.00017 3.7E-09 73.4 6.3 48 19-66 10-60 (264)
177 cd03256 ABC_PhnC_transporter A 97.5 0.00014 3.1E-09 73.3 5.7 33 33-65 17-50 (241)
178 cd03259 ABC_Carb_Solutes_like 97.5 0.00015 3.3E-09 71.4 5.7 32 33-64 16-48 (213)
179 cd03216 ABC_Carb_Monos_I This 97.5 0.00017 3.7E-09 67.0 5.7 32 33-64 16-48 (163)
180 PRK11264 putative amino-acid A 97.5 0.00016 3.5E-09 73.3 6.0 32 33-64 19-51 (250)
181 PRK11614 livF leucine/isoleuci 97.5 0.00015 3.2E-09 72.8 5.7 45 19-64 5-53 (237)
182 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00016 3.5E-09 71.7 5.9 33 33-65 21-54 (221)
183 cd03263 ABC_subfamily_A The AB 97.5 9.5E-05 2.1E-09 73.3 4.2 34 33-66 18-52 (220)
184 PRK11231 fecE iron-dicitrate t 97.5 0.00015 3.3E-09 73.5 5.8 31 34-64 19-50 (255)
185 CHL00131 ycf16 sulfate ABC tra 97.5 0.00016 3.5E-09 73.4 5.9 46 19-64 7-55 (252)
186 cd03275 ABC_SMC1_euk Eukaryoti 97.5 0.00014 3E-09 73.2 5.3 68 964-1033 146-215 (247)
187 cd03223 ABCD_peroxisomal_ALDP 97.5 0.00011 2.4E-09 68.6 4.2 33 33-65 17-50 (166)
188 PRK14266 phosphate ABC transpo 97.5 0.00017 3.8E-09 73.0 6.1 35 33-67 19-54 (250)
189 PRK09544 znuC high-affinity zi 97.5 0.00015 3.3E-09 72.8 5.6 31 34-64 21-52 (251)
190 cd03229 ABC_Class3 This class 97.5 0.00018 4E-09 68.1 5.8 44 20-63 1-47 (178)
191 cd03226 ABC_cobalt_CbiO_domain 97.5 9.5E-05 2.1E-09 72.2 4.0 32 33-64 16-48 (205)
192 TIGR01978 sufC FeS assembly AT 97.5 0.00014 3.1E-09 73.4 5.4 32 33-64 16-48 (243)
193 PRK14237 phosphate transporter 97.5 0.00019 4.2E-09 73.2 6.3 32 34-65 37-69 (267)
194 cd03257 ABC_NikE_OppD_transpor 97.5 0.00017 3.8E-09 72.0 5.9 32 33-64 21-53 (228)
195 PRK11432 fbpC ferric transport 97.5 0.0002 4.2E-09 75.5 6.4 47 17-63 4-53 (351)
196 PRK11831 putative ABC transpor 97.5 0.00015 3.2E-09 74.2 5.3 31 34-64 24-55 (269)
197 PRK14239 phosphate transporter 97.5 0.00018 3.9E-09 73.1 6.0 45 19-64 5-53 (252)
198 cd03260 ABC_PstB_phosphate_tra 97.5 0.00018 3.9E-09 71.7 5.8 34 33-66 16-50 (227)
199 PRK14255 phosphate ABC transpo 97.5 0.00019 4.1E-09 72.8 6.1 45 19-64 5-53 (252)
200 cd03225 ABC_cobalt_CbiO_domain 97.5 0.00014 2.9E-09 71.6 4.9 32 33-64 17-49 (211)
201 cd03293 ABC_NrtD_SsuB_transpor 97.5 0.0001 2.2E-09 73.0 4.0 31 34-64 21-52 (220)
202 PRK13644 cbiO cobalt transport 97.5 0.00019 4.2E-09 73.4 6.1 34 33-66 18-52 (274)
203 PRK14240 phosphate transporter 97.5 0.0002 4.4E-09 72.6 6.2 33 33-65 19-52 (250)
204 PF13558 SbcCD_C: Putative exo 97.5 0.00017 3.7E-09 58.3 4.5 51 968-1018 27-88 (90)
205 PRK14275 phosphate ABC transpo 97.5 0.00021 4.6E-09 73.5 6.4 31 34-64 56-87 (286)
206 cd03266 ABC_NatA_sodium_export 97.5 0.00021 4.5E-09 70.7 6.1 32 33-64 21-53 (218)
207 PRK10247 putative ABC transpor 97.4 0.00021 4.5E-09 70.9 6.1 50 14-63 2-54 (225)
208 TIGR00972 3a0107s01c2 phosphat 97.4 0.00021 4.4E-09 72.3 6.1 33 33-65 17-50 (247)
209 PRK15177 Vi polysaccharide exp 97.4 0.00011 2.4E-09 71.8 4.0 32 34-65 4-36 (213)
210 PRK14253 phosphate ABC transpo 97.4 0.00018 3.9E-09 72.8 5.8 32 33-64 19-51 (249)
211 KOG1003 Actin filament-coating 97.4 0.082 1.8E-06 47.6 25.0 33 641-673 6-38 (205)
212 cd03243 ABC_MutS_homologs The 97.4 0.00011 2.4E-09 71.3 4.0 34 31-64 17-51 (202)
213 TIGR01189 ccmA heme ABC export 97.4 0.00019 4.2E-09 69.5 5.7 33 33-65 16-49 (198)
214 PRK11124 artP arginine transpo 97.4 0.0002 4.2E-09 72.2 5.9 31 33-63 18-49 (242)
215 cd03280 ABC_MutS2 MutS2 homolo 97.4 0.00014 2.9E-09 70.5 4.5 33 32-64 16-50 (200)
216 TIGR00968 3a0106s01 sulfate AB 97.4 0.00019 4.2E-09 71.8 5.8 31 33-63 16-47 (237)
217 PRK14241 phosphate transporter 97.4 0.0002 4.3E-09 72.9 6.0 34 33-66 20-54 (258)
218 PRK14267 phosphate ABC transpo 97.4 0.0002 4.4E-09 72.7 6.0 32 33-64 20-52 (253)
219 cd03278 ABC_SMC_barmotin Barmo 97.4 0.00019 4.1E-09 68.9 5.4 62 969-1033 109-172 (197)
220 PRK14250 phosphate ABC transpo 97.4 0.00024 5.1E-09 71.4 6.3 47 17-63 1-50 (241)
221 cd03258 ABC_MetN_methionine_tr 97.4 0.00019 4.2E-09 71.8 5.6 45 19-63 1-52 (233)
222 TIGR01288 nodI ATP-binding ABC 97.4 0.00021 4.4E-09 74.5 6.0 30 34-63 21-51 (303)
223 PRK09580 sufC cysteine desulfu 97.4 0.0002 4.3E-09 72.6 5.7 32 33-64 17-49 (248)
224 PRK13543 cytochrome c biogenes 97.4 0.00028 6E-09 69.3 6.6 46 19-64 11-59 (214)
225 PRK14274 phosphate ABC transpo 97.4 0.00021 4.5E-09 72.8 5.9 46 20-66 13-62 (259)
226 PRK10771 thiQ thiamine transpo 97.4 0.00025 5.5E-09 70.8 6.3 30 35-64 17-47 (232)
227 PRK00409 recombination and DNA 97.4 0.02 4.4E-07 67.3 22.6 33 33-65 316-350 (782)
228 PRK14259 phosphate ABC transpo 97.4 0.00026 5.5E-09 72.3 6.4 45 19-64 13-61 (269)
229 cd03214 ABC_Iron-Siderophores_ 97.4 0.00014 3E-09 69.1 4.2 32 33-64 15-47 (180)
230 PRK14254 phosphate ABC transpo 97.4 0.00029 6.3E-09 72.4 6.8 46 20-65 40-88 (285)
231 PRK14248 phosphate ABC transpo 97.4 0.00029 6.2E-09 72.1 6.7 32 34-65 38-70 (268)
232 PRK10908 cell division protein 97.4 0.00026 5.5E-09 70.2 6.1 31 33-63 18-49 (222)
233 PRK14236 phosphate transporter 97.4 0.00032 6.9E-09 71.8 7.0 32 33-64 41-73 (272)
234 PRK14268 phosphate ABC transpo 97.4 0.00027 5.9E-09 71.8 6.4 32 33-64 28-60 (258)
235 cd03235 ABC_Metallic_Cations A 97.4 0.00016 3.4E-09 71.3 4.5 32 33-64 15-47 (213)
236 PRK10253 iron-enterobactin tra 97.4 0.00021 4.5E-09 73.0 5.5 31 34-64 24-55 (265)
237 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.4 0.00024 5.2E-09 71.4 5.9 33 33-65 19-52 (238)
238 cd03246 ABCC_Protease_Secretio 97.4 0.00015 3.3E-09 68.3 4.2 33 33-65 18-51 (173)
239 cd03292 ABC_FtsE_transporter F 97.4 0.00014 3.1E-09 71.7 4.1 32 33-64 17-49 (214)
240 cd03228 ABCC_MRP_Like The MRP 97.4 0.00017 3.6E-09 67.9 4.3 34 33-66 18-52 (171)
241 TIGR03522 GldA_ABC_ATP gliding 97.4 0.00023 5E-09 73.9 5.8 30 34-63 19-49 (301)
242 cd03300 ABC_PotA_N PotA is an 97.4 0.00026 5.5E-09 70.7 5.9 33 32-64 15-48 (232)
243 TIGR03411 urea_trans_UrtD urea 97.4 0.00025 5.3E-09 71.6 5.8 34 33-66 18-52 (242)
244 COG4477 EzrA Negative regulato 97.4 0.27 5.8E-06 52.2 36.2 39 176-214 94-132 (570)
245 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.00025 5.4E-09 71.4 5.8 32 33-64 17-49 (242)
246 PRK09039 hypothetical protein; 97.4 0.074 1.6E-06 55.7 24.0 51 637-687 44-94 (343)
247 PRK13548 hmuV hemin importer A 97.4 0.00025 5.4E-09 72.0 5.8 33 33-65 18-51 (258)
248 TIGR02323 CP_lyasePhnK phospho 97.4 0.00025 5.4E-09 72.1 5.8 46 20-65 4-52 (253)
249 PF14662 CCDC155: Coiled-coil 97.4 0.1 2.2E-06 47.3 25.3 40 640-679 9-48 (193)
250 cd03369 ABCC_NFT1 Domain 2 of 97.4 0.00037 8E-09 68.2 6.8 44 20-64 7-56 (207)
251 PRK13646 cbiO cobalt transport 97.4 0.00027 5.8E-09 72.9 6.0 45 18-63 1-54 (286)
252 PRK13632 cbiO cobalt transport 97.4 0.00026 5.6E-09 72.4 5.9 32 33-64 25-57 (271)
253 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00017 3.7E-09 59.4 3.6 30 34-63 6-36 (107)
254 PRK10895 lipopolysaccharide AB 97.4 0.00023 4.9E-09 71.7 5.3 32 34-65 20-52 (241)
255 TIGR03410 urea_trans_UrtE urea 97.4 0.00026 5.7E-09 70.7 5.7 43 21-63 2-47 (230)
256 cd03232 ABC_PDR_domain2 The pl 97.4 0.00016 3.4E-09 69.5 4.0 31 33-63 23-54 (192)
257 PF09730 BicD: Microtubule-ass 97.4 0.44 9.5E-06 54.2 54.8 54 640-693 266-319 (717)
258 PRK14252 phosphate ABC transpo 97.4 0.00036 7.8E-09 71.3 6.8 46 19-64 16-64 (265)
259 PRK09984 phosphonate/organopho 97.4 0.00027 5.9E-09 72.1 5.9 33 33-65 20-53 (262)
260 PRK14235 phosphate transporter 97.4 0.00028 6E-09 72.1 5.9 34 33-66 35-69 (267)
261 TIGR03265 PhnT2 putative 2-ami 97.4 0.00029 6.2E-09 74.4 6.1 46 19-64 4-52 (353)
262 PRK14270 phosphate ABC transpo 97.4 0.00029 6.3E-09 71.4 6.0 32 33-64 20-52 (251)
263 cd03288 ABCC_SUR2 The SUR doma 97.4 0.0004 8.7E-09 70.5 7.0 56 7-64 8-69 (257)
264 PRK13639 cbiO cobalt transport 97.4 0.00029 6.2E-09 72.2 6.0 31 33-63 18-49 (275)
265 cd03301 ABC_MalK_N The N-termi 97.4 0.00029 6.3E-09 69.4 5.9 44 20-63 1-47 (213)
266 cd03218 ABC_YhbG The ABC trans 97.4 0.00027 5.9E-09 70.7 5.8 33 33-65 16-49 (232)
267 PRK14244 phosphate ABC transpo 97.4 0.00027 5.8E-09 71.7 5.7 33 33-65 21-54 (251)
268 TIGR03608 L_ocin_972_ABC putat 97.4 0.00017 3.6E-09 70.7 4.1 34 33-66 14-48 (206)
269 PRK13635 cbiO cobalt transport 97.4 0.0003 6.5E-09 72.1 6.1 44 20-63 6-54 (279)
270 TIGR03740 galliderm_ABC gallid 97.4 0.00029 6.2E-09 69.9 5.8 33 34-66 17-50 (223)
271 TIGR02770 nickel_nikD nickel i 97.4 0.00017 3.7E-09 71.8 4.2 31 33-63 2-33 (230)
272 PRK13537 nodulation ABC transp 97.4 0.00033 7.2E-09 72.7 6.4 31 34-64 24-55 (306)
273 PRK10419 nikE nickel transport 97.3 0.00028 6E-09 72.0 5.7 47 17-63 1-59 (268)
274 PRK13649 cbiO cobalt transport 97.3 0.0003 6.5E-09 72.5 6.0 31 34-64 24-55 (280)
275 PRK13545 tagH teichoic acids e 97.3 0.00032 6.9E-09 75.9 6.3 54 11-64 13-72 (549)
276 TIGR01184 ntrCD nitrate transp 97.3 0.00019 4E-09 71.4 4.3 30 35-64 3-33 (230)
277 cd03217 ABC_FeS_Assembly ABC-t 97.3 0.00022 4.7E-09 69.1 4.6 32 33-64 16-48 (200)
278 cd03290 ABCC_SUR1_N The SUR do 97.3 0.00018 3.9E-09 71.1 4.2 34 33-66 17-51 (218)
279 PRK03695 vitamin B12-transport 97.3 0.00015 3.2E-09 73.1 3.6 41 22-64 3-44 (248)
280 PRK13633 cobalt transporter AT 97.3 0.00029 6.3E-09 72.4 5.8 30 34-63 27-57 (280)
281 PRK11300 livG leucine/isoleuci 97.3 0.00027 5.8E-09 71.9 5.5 46 19-65 5-54 (255)
282 TIGR03005 ectoine_ehuA ectoine 97.3 0.00029 6.2E-09 71.5 5.7 31 33-63 16-47 (252)
283 PRK15056 manganese/iron transp 97.3 0.00029 6.4E-09 72.1 5.8 32 33-64 23-55 (272)
284 PRK13641 cbiO cobalt transport 97.3 0.00031 6.8E-09 72.4 6.0 33 33-65 23-56 (287)
285 PRK13536 nodulation factor exp 97.3 0.00032 6.8E-09 73.7 6.0 31 34-64 58-89 (340)
286 cd03298 ABC_ThiQ_thiamine_tran 97.3 0.00035 7.6E-09 68.7 6.0 30 35-64 16-46 (211)
287 PF09730 BicD: Microtubule-ass 97.3 0.48 1E-05 53.9 54.9 27 640-666 584-610 (717)
288 PRK13640 cbiO cobalt transport 97.3 0.00032 7E-09 72.1 6.0 46 19-65 5-56 (282)
289 PF05701 WEMBL: Weak chloropla 97.3 0.45 9.7E-06 53.5 57.0 45 639-683 288-332 (522)
290 PRK14249 phosphate ABC transpo 97.3 0.00035 7.7E-09 70.8 6.2 32 33-64 20-52 (251)
291 cd03254 ABCC_Glucan_exporter_l 97.3 0.0002 4.3E-09 71.6 4.3 32 33-64 19-51 (229)
292 PRK14263 phosphate ABC transpo 97.3 0.0004 8.7E-09 70.5 6.5 34 33-66 24-58 (261)
293 PF05701 WEMBL: Weak chloropla 97.3 0.46 9.9E-06 53.4 58.9 53 638-690 280-332 (522)
294 COG0410 LivF ABC-type branched 97.3 0.00039 8.5E-09 65.0 5.7 25 43-67 30-54 (237)
295 PF13304 AAA_21: AAA domain; P 97.3 5.2E-05 1.1E-09 80.1 0.0 24 44-67 1-24 (303)
296 PRK14260 phosphate ABC transpo 97.3 0.00035 7.7E-09 71.0 6.1 34 33-66 23-57 (259)
297 PRK14251 phosphate ABC transpo 97.3 0.00035 7.6E-09 70.8 6.0 46 20-66 5-54 (251)
298 COG4372 Uncharacterized protei 97.3 0.23 4.9E-06 49.8 33.5 44 186-229 74-117 (499)
299 cd03231 ABC_CcmA_heme_exporter 97.3 0.00037 8E-09 67.6 5.9 44 20-63 1-47 (201)
300 PRK10619 histidine/lysine/argi 97.3 0.00035 7.5E-09 71.1 5.8 46 20-65 6-54 (257)
301 KOG0946 ER-Golgi vesicle-tethe 97.3 0.45 9.8E-06 53.1 29.9 15 27-41 371-385 (970)
302 cd03213 ABCG_EPDR ABCG transpo 97.3 0.00042 9.1E-09 66.7 6.0 47 17-63 1-56 (194)
303 PRK13647 cbiO cobalt transport 97.3 0.00039 8.4E-09 71.2 6.1 46 20-65 5-54 (274)
304 PRK11701 phnK phosphonate C-P 97.3 0.0004 8.7E-09 70.6 6.2 50 14-63 1-53 (258)
305 cd03233 ABC_PDR_domain1 The pl 97.3 0.0002 4.4E-09 69.4 3.8 31 33-63 23-54 (202)
306 COG1131 CcmA ABC-type multidru 97.3 0.00022 4.7E-09 73.1 4.2 33 34-66 22-55 (293)
307 cd03251 ABCC_MsbA MsbA is an e 97.3 0.00023 4.9E-09 71.4 4.2 34 33-66 18-52 (234)
308 PRK11000 maltose/maltodextrin 97.3 0.00037 8.1E-09 74.3 6.1 31 34-64 20-51 (369)
309 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0002 4.3E-09 66.7 3.5 26 38-63 20-46 (177)
310 PRK09452 potA putrescine/sperm 97.3 0.00039 8.5E-09 73.8 6.1 46 20-65 15-63 (375)
311 PRK14269 phosphate ABC transpo 97.3 0.00038 8.3E-09 70.2 5.8 32 33-64 18-50 (246)
312 cd03247 ABCC_cytochrome_bd The 97.3 0.00023 5.1E-09 67.5 4.0 33 33-65 18-51 (178)
313 PRK09039 hypothetical protein; 97.3 0.11 2.4E-06 54.4 23.9 20 260-279 46-65 (343)
314 PRK13636 cbiO cobalt transport 97.3 0.00042 9.1E-09 71.3 6.2 48 19-66 5-56 (283)
315 PRK11153 metN DL-methionine tr 97.3 0.00037 8E-09 73.7 5.9 45 19-63 1-52 (343)
316 cd03252 ABCC_Hemolysin The ABC 97.3 0.0004 8.6E-09 69.8 5.9 34 33-66 18-52 (237)
317 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.3 0.00022 4.8E-09 70.5 4.0 31 34-64 39-70 (224)
318 COG5185 HEC1 Protein involved 97.3 0.3 6.4E-06 50.4 32.5 62 676-742 297-358 (622)
319 PRK14256 phosphate ABC transpo 97.3 0.00041 8.9E-09 70.3 6.0 34 33-66 20-54 (252)
320 PRK13650 cbiO cobalt transport 97.3 0.00039 8.5E-09 71.3 5.9 33 33-65 23-56 (279)
321 PRK10851 sulfate/thiosulfate t 97.3 0.00038 8.3E-09 73.5 5.9 32 34-65 19-51 (353)
322 COG1136 SalX ABC-type antimicr 97.3 0.0003 6.4E-09 67.0 4.5 38 34-71 22-60 (226)
323 TIGR02982 heterocyst_DevA ABC 97.3 0.00044 9.5E-09 68.4 6.0 31 33-63 21-52 (220)
324 cd03267 ABC_NatA_like Similar 97.3 0.00024 5.2E-09 71.0 4.1 31 33-63 37-68 (236)
325 PRK11607 potG putrescine trans 97.3 0.00055 1.2E-08 72.9 7.0 31 34-64 36-67 (377)
326 TIGR02769 nickel_nikE nickel i 97.3 0.00046 9.9E-09 70.4 6.1 46 18-63 1-58 (265)
327 cd03250 ABCC_MRP_domain1 Domai 97.3 0.00026 5.6E-09 69.1 4.1 32 33-64 21-53 (204)
328 PRK15112 antimicrobial peptide 97.3 0.00024 5.2E-09 72.5 4.0 31 33-63 29-60 (267)
329 PRK13645 cbiO cobalt transport 97.2 0.00023 5E-09 73.6 3.9 31 33-63 27-58 (289)
330 PRK13652 cbiO cobalt transport 97.2 0.00046 1E-08 70.8 6.1 32 34-65 21-53 (277)
331 cd03294 ABC_Pro_Gly_Bertaine T 97.2 0.00026 5.6E-09 72.3 4.2 35 29-63 36-71 (269)
332 COG3839 MalK ABC-type sugar tr 97.2 0.00041 8.9E-09 70.7 5.4 31 36-66 22-53 (338)
333 PF15619 Lebercilin: Ciliary p 97.2 0.18 4E-06 47.3 26.5 26 376-401 121-146 (194)
334 PRK14271 phosphate ABC transpo 97.2 0.00074 1.6E-08 69.1 7.4 45 19-64 21-69 (276)
335 PRK10418 nikD nickel transport 97.2 0.00046 9.9E-09 70.0 5.8 47 17-63 2-50 (254)
336 PRK09536 btuD corrinoid ABC tr 97.2 0.00043 9.2E-09 74.0 5.8 45 19-64 3-51 (402)
337 TIGR02324 CP_lyasePhnL phospho 97.2 0.00028 6E-09 70.2 4.2 33 33-65 24-57 (224)
338 cd03245 ABCC_bacteriocin_expor 97.2 0.00029 6.3E-09 69.8 4.3 31 33-63 20-51 (220)
339 TIGR01188 drrA daunorubicin re 97.2 0.00027 5.8E-09 73.6 4.1 32 33-64 9-41 (302)
340 PF00038 Filament: Intermediat 97.2 0.38 8.2E-06 50.6 38.8 20 381-400 224-243 (312)
341 COG1122 CbiO ABC-type cobalt t 97.2 0.00042 9E-09 67.6 5.1 31 36-66 23-54 (235)
342 COG1122 CbiO ABC-type cobalt t 97.2 0.00047 1E-08 67.2 5.3 59 969-1031 134-194 (235)
343 PRK13637 cbiO cobalt transport 97.2 0.00027 5.9E-09 72.8 4.0 31 33-63 23-54 (287)
344 PRK11650 ugpC glycerol-3-phosp 97.2 0.00051 1.1E-08 72.6 6.1 31 34-64 21-52 (356)
345 PRK14246 phosphate ABC transpo 97.2 0.00042 9.2E-09 70.1 5.1 31 33-63 26-57 (257)
346 cd03244 ABCC_MRP_domain2 Domai 97.2 0.00034 7.3E-09 69.4 4.3 32 33-64 20-52 (221)
347 PRK14272 phosphate ABC transpo 97.2 0.00055 1.2E-08 69.6 5.9 33 34-66 21-54 (252)
348 PRK13546 teichoic acids export 97.2 0.00033 7.1E-09 70.8 4.1 35 29-63 36-71 (264)
349 COG1117 PstB ABC-type phosphat 97.2 0.00045 9.7E-09 63.3 4.3 30 36-65 26-56 (253)
350 cd03253 ABCC_ATM1_transporter 97.2 0.00035 7.6E-09 70.2 4.1 31 33-63 17-48 (236)
351 PRK13634 cbiO cobalt transport 97.2 0.00066 1.4E-08 70.1 6.2 45 19-63 1-54 (290)
352 PRK10929 putative mechanosensi 97.2 0.65 1.4E-05 56.3 31.2 14 994-1007 1025-1038(1109)
353 cd03234 ABCG_White The White s 97.2 0.00038 8.2E-09 69.2 4.2 31 33-63 23-54 (226)
354 TIGR01277 thiQ thiamine ABC tr 97.1 0.00064 1.4E-08 66.8 5.7 31 34-64 15-46 (213)
355 cd03299 ABC_ModC_like Archeal 97.1 0.00065 1.4E-08 67.9 5.8 32 33-64 15-47 (235)
356 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.00063 1.4E-08 63.0 5.3 54 974-1033 81-136 (157)
357 PRK13643 cbiO cobalt transport 97.1 0.00067 1.5E-08 70.0 6.0 44 19-63 1-53 (288)
358 TIGR03873 F420-0_ABC_ATP propo 97.1 0.00064 1.4E-08 69.1 5.8 44 20-63 2-48 (256)
359 PRK15439 autoinducer 2 ABC tra 97.1 0.00065 1.4E-08 76.8 6.4 57 971-1033 401-459 (510)
360 PRK14258 phosphate ABC transpo 97.1 0.00062 1.4E-08 69.3 5.6 46 18-63 1-54 (261)
361 PRK13642 cbiO cobalt transport 97.1 0.0007 1.5E-08 69.5 6.0 46 18-63 3-54 (277)
362 COG1116 TauB ABC-type nitrate/ 97.1 0.00058 1.3E-08 65.1 4.8 33 34-66 20-53 (248)
363 PRK13651 cobalt transporter AT 97.1 0.0004 8.6E-09 71.9 4.1 35 29-63 19-54 (305)
364 PRK15093 antimicrobial peptide 97.1 0.00074 1.6E-08 71.0 6.2 34 33-66 23-57 (330)
365 COG4942 Membrane-bound metallo 97.1 0.46 1E-05 49.7 30.0 25 200-224 38-62 (420)
366 cd03240 ABC_Rad50 The catalyti 97.1 0.00093 2E-08 64.6 6.3 63 970-1033 112-179 (204)
367 TIGR03719 ABC_ABC_ChvD ATP-bin 97.1 0.00059 1.3E-08 78.0 5.8 47 971-1021 441-489 (552)
368 KOG0976 Rho/Rac1-interacting s 97.1 0.69 1.5E-05 51.3 55.9 48 712-759 349-396 (1265)
369 PRK11281 hypothetical protein; 97.1 0.49 1.1E-05 57.5 29.6 13 994-1006 1028-1040(1113)
370 PRK11819 putative ABC transpor 97.1 0.00063 1.4E-08 77.8 5.8 47 971-1021 443-491 (556)
371 PRK11147 ABC transporter ATPas 97.1 0.00065 1.4E-08 78.9 5.9 32 33-64 19-51 (635)
372 cd03237 ABC_RNaseL_inhibitor_d 97.1 0.00049 1.1E-08 68.8 4.3 22 43-64 26-47 (246)
373 cd03227 ABC_Class2 ABC-type Cl 97.1 0.00096 2.1E-08 61.9 5.9 59 973-1033 77-137 (162)
374 KOG0963 Transcription factor/C 97.1 0.65 1.4E-05 50.5 33.7 12 431-442 346-357 (629)
375 COG4942 Membrane-bound metallo 97.1 0.52 1.1E-05 49.4 28.6 44 257-300 63-106 (420)
376 cd03297 ABC_ModC_molybdenum_tr 97.1 0.00057 1.2E-08 67.3 4.5 38 24-63 7-44 (214)
377 COG4619 ABC-type uncharacteriz 97.1 0.00064 1.4E-08 59.4 3.9 31 37-67 23-54 (223)
378 cd03289 ABCC_CFTR2 The CFTR su 97.0 0.0011 2.3E-08 67.4 6.2 34 33-66 20-54 (275)
379 PRK15064 ABC transporter ATP-b 97.0 0.00087 1.9E-08 76.4 6.2 47 971-1021 436-484 (530)
380 COG4555 NatA ABC-type Na+ tran 97.0 0.0005 1.1E-08 62.3 3.2 31 37-67 20-53 (245)
381 PF14662 CCDC155: Coiled-coil 97.0 0.25 5.4E-06 44.9 28.0 7 429-435 179-185 (193)
382 PRK09700 D-allose transporter 97.0 0.00055 1.2E-08 77.6 4.5 34 33-66 279-313 (510)
383 KOG0612 Rho-associated, coiled 97.0 1.2 2.6E-05 52.7 32.3 11 23-33 212-222 (1317)
384 PRK13631 cbiO cobalt transport 97.0 0.00057 1.2E-08 71.3 4.1 31 33-63 42-73 (320)
385 cd03272 ABC_SMC3_euk Eukaryoti 97.0 0.001 2.2E-08 67.2 5.8 61 970-1033 155-217 (243)
386 PRK10762 D-ribose transporter 97.0 0.00085 1.8E-08 75.8 5.7 46 18-63 3-51 (501)
387 TIGR02314 ABC_MetN D-methionin 97.0 0.0011 2.4E-08 69.4 6.1 45 19-63 1-52 (343)
388 PRK09700 D-allose transporter 97.0 0.00085 1.9E-08 76.1 5.6 57 971-1033 407-465 (510)
389 PRK13549 xylose transporter AT 97.0 0.00092 2E-08 75.7 5.8 57 971-1033 403-461 (506)
390 KOG0976 Rho/Rac1-interacting s 97.0 0.88 1.9E-05 50.5 63.6 11 901-911 615-625 (1265)
391 cd03273 ABC_SMC2_euk Eukaryoti 97.0 0.0012 2.6E-08 66.7 5.9 60 971-1033 164-225 (251)
392 PRK10929 putative mechanosensi 97.0 1.6 3.4E-05 53.1 32.5 24 415-438 286-309 (1109)
393 PF05557 MAD: Mitotic checkpoi 97.0 0.0026 5.7E-08 74.9 9.4 38 888-925 608-645 (722)
394 PRK09473 oppD oligopeptide tra 97.0 0.0012 2.6E-08 69.2 5.8 49 15-63 8-63 (330)
395 PRK15064 ABC transporter ATP-b 96.9 0.0011 2.4E-08 75.5 6.1 30 34-63 336-366 (530)
396 COG4138 BtuD ABC-type cobalami 96.9 0.00056 1.2E-08 60.0 2.6 25 46-70 29-53 (248)
397 COG3883 Uncharacterized protei 96.9 0.45 9.7E-06 46.4 27.6 63 637-699 36-98 (265)
398 TIGR03771 anch_rpt_ABC anchore 96.9 0.00063 1.4E-08 67.3 3.4 26 38-63 1-27 (223)
399 TIGR03258 PhnT 2-aminoethylpho 96.9 0.0013 2.9E-08 69.6 6.0 44 20-63 6-52 (362)
400 COG2884 FtsE Predicted ATPase 96.9 0.00098 2.1E-08 59.9 4.1 30 37-66 22-52 (223)
401 cd03270 ABC_UvrA_I The excisio 96.9 0.00085 1.8E-08 66.3 4.2 43 25-67 1-46 (226)
402 COG3840 ThiQ ABC-type thiamine 96.9 0.0008 1.7E-08 59.8 3.5 33 32-64 10-47 (231)
403 TIGR02633 xylG D-xylose ABC tr 96.9 0.0012 2.6E-08 74.8 5.9 45 19-63 1-48 (500)
404 PRK11022 dppD dipeptide transp 96.9 0.0013 2.7E-08 69.0 5.6 47 17-63 1-54 (326)
405 KOG0064 Peroxisomal long-chain 96.9 0.00075 1.6E-08 70.5 3.7 28 36-63 501-529 (728)
406 TIGR03719 ABC_ABC_ChvD ATP-bin 96.9 0.0011 2.5E-08 75.7 5.6 32 33-64 338-370 (552)
407 TIGR03415 ABC_choXWV_ATP choli 96.9 0.00076 1.6E-08 71.4 3.8 35 29-63 36-71 (382)
408 KOG0978 E3 ubiquitin ligase in 96.9 1.1 2.4E-05 50.4 39.1 290 180-476 357-649 (698)
409 PRK11819 putative ABC transpor 96.9 0.0013 2.7E-08 75.3 5.9 46 19-64 324-372 (556)
410 PRK11288 araG L-arabinose tran 96.9 0.0013 2.8E-08 74.4 5.8 57 971-1033 394-452 (501)
411 KOG0946 ER-Golgi vesicle-tethe 96.9 1.1 2.4E-05 50.2 28.1 57 649-705 660-716 (970)
412 PRK14257 phosphate ABC transpo 96.9 0.00087 1.9E-08 70.1 4.1 30 34-63 99-129 (329)
413 PRK11144 modC molybdate transp 96.9 0.001 2.2E-08 70.7 4.5 36 28-63 8-45 (352)
414 PRK11147 ABC transporter ATPas 96.9 0.0014 2.9E-08 76.3 5.9 32 33-64 335-367 (635)
415 TIGR02142 modC_ABC molybdenum 96.9 0.00093 2E-08 71.1 4.1 29 35-63 15-44 (354)
416 PF08317 Spc7: Spc7 kinetochor 96.8 0.82 1.8E-05 47.9 33.3 12 143-154 16-27 (325)
417 PRK11281 hypothetical protein; 96.8 1.4 3E-05 53.8 30.3 13 1010-1022 1007-1019(1113)
418 PRK10070 glycine betaine trans 96.8 0.0009 1.9E-08 71.5 3.8 31 33-63 44-75 (400)
419 cd03241 ABC_RecN RecN ATPase i 96.8 0.0029 6.3E-08 64.8 7.3 60 971-1033 168-229 (276)
420 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0011 2.4E-08 64.4 4.0 33 32-64 16-51 (213)
421 cd03236 ABC_RNaseL_inhibitor_d 96.8 0.00096 2.1E-08 67.0 3.6 24 40-63 23-47 (255)
422 PRK10636 putative ABC transpor 96.8 0.0017 3.7E-08 75.2 6.0 31 34-64 329-360 (638)
423 PLN03073 ABC transporter F fam 96.8 0.0021 4.6E-08 74.7 6.8 46 971-1020 625-672 (718)
424 cd03271 ABC_UvrA_II The excisi 96.8 0.0014 3.1E-08 65.3 4.6 31 34-64 12-43 (261)
425 PRK10636 putative ABC transpor 96.8 0.0013 2.8E-08 76.2 5.0 32 33-64 17-49 (638)
426 COG1119 ModF ABC-type molybden 96.8 0.0025 5.5E-08 60.3 5.7 53 11-63 23-78 (257)
427 TIGR01186 proV glycine betaine 96.7 0.0012 2.6E-08 69.6 3.8 31 33-63 9-40 (363)
428 PLN03073 ABC transporter F fam 96.7 0.002 4.4E-08 74.9 6.0 33 33-65 525-558 (718)
429 cd03237 ABC_RNaseL_inhibitor_d 96.7 0.002 4.3E-08 64.5 5.1 49 971-1023 113-163 (246)
430 PRK15079 oligopeptide ABC tran 96.7 0.0026 5.6E-08 66.7 6.1 51 13-63 2-68 (331)
431 PRK11308 dppF dipeptide transp 96.7 0.0029 6.2E-08 66.3 6.4 49 15-63 1-62 (327)
432 COG3638 ABC-type phosphate/pho 96.7 0.0016 3.5E-08 61.0 3.9 27 38-64 25-52 (258)
433 PF05911 DUF869: Plant protein 96.7 1.9 4.1E-05 50.1 67.6 15 351-365 190-204 (769)
434 PRK14079 recF recombination pr 96.7 0.046 9.9E-07 57.9 15.1 43 973-1015 263-311 (349)
435 COG1134 TagH ABC-type polysacc 96.7 0.0018 3.9E-08 61.4 4.0 33 35-67 45-78 (249)
436 TIGR00611 recf recF protein. A 96.7 0.038 8.3E-07 58.7 14.5 57 972-1033 274-337 (365)
437 cd03274 ABC_SMC4_euk Eukaryoti 96.7 0.0029 6.2E-08 61.6 5.6 61 970-1033 124-186 (212)
438 COG1245 Predicted ATPase, RNas 96.7 0.0025 5.4E-08 65.6 5.2 59 970-1033 210-269 (591)
439 COG3840 ThiQ ABC-type thiamine 96.7 0.0036 7.9E-08 55.8 5.5 59 971-1033 127-186 (231)
440 COG3842 PotA ABC-type spermidi 96.7 0.0019 4.2E-08 66.3 4.5 30 34-63 22-52 (352)
441 COG1101 PhnK ABC-type uncharac 96.7 0.0018 3.9E-08 59.5 3.7 24 43-66 33-56 (263)
442 PRK00064 recF recombination pr 96.6 0.067 1.4E-06 57.1 16.2 45 971-1015 271-321 (361)
443 PF15070 GOLGA2L5: Putative go 96.6 1.8 3.9E-05 49.1 36.3 8 996-1003 600-608 (617)
444 cd03235 ABC_Metallic_Cations A 96.6 0.0032 7E-08 62.0 5.8 49 971-1023 130-180 (213)
445 KOG0963 Transcription factor/C 96.6 1.5 3.2E-05 47.9 32.7 9 142-150 63-71 (629)
446 COG4619 ABC-type uncharacteriz 96.6 0.0027 5.9E-08 55.6 4.4 58 970-1034 130-189 (223)
447 cd03284 ABC_MutS1 MutS1 homolo 96.6 0.0021 4.5E-08 62.7 4.3 34 31-64 17-52 (216)
448 COG1118 CysA ABC-type sulfate/ 96.6 0.002 4.4E-08 62.9 4.0 34 34-67 19-53 (345)
449 TIGR02322 phosphon_PhnN phosph 96.6 0.0021 4.5E-08 61.2 4.1 26 43-68 2-27 (179)
450 TIGR01184 ntrCD nitrate transp 96.6 0.0027 5.9E-08 63.1 4.9 50 971-1024 112-163 (230)
451 PRK10078 ribose 1,5-bisphospho 96.6 0.0016 3.6E-08 62.1 3.2 25 43-67 3-27 (186)
452 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.0027 5.9E-08 61.0 4.3 30 35-64 21-51 (204)
453 cd03259 ABC_Carb_Solutes_like 96.5 0.0029 6.4E-08 62.2 4.8 57 972-1033 129-187 (213)
454 COG4559 ABC-type hemin transpo 96.5 0.0044 9.5E-08 56.9 5.2 56 969-1024 131-190 (259)
455 cd01131 PilT Pilus retraction 96.5 0.0021 4.6E-08 61.8 3.6 26 42-67 1-26 (198)
456 PRK11247 ssuB aliphatic sulfon 96.5 0.0034 7.3E-08 63.3 5.1 58 971-1033 131-190 (257)
457 cd01130 VirB11-like_ATPase Typ 96.5 0.0023 5E-08 61.0 3.7 25 42-66 25-49 (186)
458 PF04849 HAP1_N: HAP1 N-termin 96.5 1.1 2.3E-05 44.9 27.6 41 324-364 207-247 (306)
459 COG4615 PvdE ABC-type sideroph 96.5 0.0041 8.8E-08 62.8 5.3 41 22-62 320-369 (546)
460 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0036 7.9E-08 61.9 5.2 48 972-1023 130-179 (220)
461 cd03260 ABC_PstB_phosphate_tra 96.5 0.004 8.6E-08 62.1 5.4 49 971-1023 139-189 (227)
462 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0043 9.4E-08 61.0 5.6 48 972-1023 133-182 (211)
463 COG5185 HEC1 Protein involved 96.5 1.4 3E-05 45.8 34.6 17 849-865 496-512 (622)
464 TIGR01166 cbiO cobalt transpor 96.5 0.0041 9E-08 59.8 5.3 56 972-1033 126-183 (190)
465 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0038 8.2E-08 61.9 5.0 48 972-1023 140-189 (221)
466 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.4 0.0044 9.6E-08 61.3 5.4 57 971-1033 140-198 (224)
467 PF15070 GOLGA2L5: Putative go 96.4 2.4 5.3E-05 48.2 37.1 9 239-247 55-63 (617)
468 TIGR01277 thiQ thiamine ABC tr 96.4 0.0046 1E-07 60.8 5.3 57 972-1033 127-185 (213)
469 smart00534 MUTSac ATPase domai 96.4 0.0025 5.4E-08 60.7 3.2 21 44-64 1-21 (185)
470 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.0057 1.2E-07 59.5 5.6 51 969-1023 135-187 (254)
471 PRK11629 lolD lipoprotein tran 96.4 0.0043 9.3E-08 62.0 5.0 57 972-1033 144-202 (233)
472 cd03268 ABC_BcrA_bacitracin_re 96.4 0.0039 8.5E-08 61.1 4.7 57 971-1033 124-182 (208)
473 cd03298 ABC_ThiQ_thiamine_tran 96.4 0.005 1.1E-07 60.5 5.3 48 972-1023 127-176 (211)
474 TIGR03864 PQQ_ABC_ATP ABC tran 96.4 0.0043 9.2E-08 62.2 4.9 57 972-1033 131-189 (236)
475 COG1120 FepC ABC-type cobalami 96.4 0.0063 1.4E-07 59.5 5.7 54 969-1026 134-189 (258)
476 cd03269 ABC_putative_ATPase Th 96.4 0.0047 1E-07 60.6 5.0 48 971-1022 126-175 (210)
477 PRK13409 putative ATPase RIL; 96.3 0.0046 1E-07 70.4 5.6 53 971-1027 451-505 (590)
478 cd03230 ABC_DR_subfamily_A Thi 96.3 0.0055 1.2E-07 57.8 5.2 54 974-1033 96-151 (173)
479 COG1124 DppF ABC-type dipeptid 96.3 0.0036 7.9E-08 59.2 3.8 34 30-63 20-54 (252)
480 cd03256 ABC_PhnC_transporter A 96.3 0.0053 1.2E-07 61.9 5.4 58 971-1033 142-201 (241)
481 TIGR00554 panK_bact pantothena 96.3 0.0031 6.8E-08 63.7 3.6 27 41-67 61-87 (290)
482 PLN03211 ABC transporter G-25; 96.3 0.003 6.5E-08 73.0 3.9 31 33-63 84-115 (659)
483 KOG0927 Predicted transporter 96.3 0.006 1.3E-07 64.5 5.6 53 19-71 75-130 (614)
484 COG4185 Uncharacterized protei 96.3 0.001 2.2E-08 57.6 0.1 25 42-66 2-26 (187)
485 cd03214 ABC_Iron-Siderophores_ 96.3 0.0063 1.4E-07 57.8 5.5 49 971-1023 95-145 (180)
486 KOG4593 Mitotic checkpoint pro 96.3 2.4 5.3E-05 47.0 65.6 19 848-866 560-578 (716)
487 cd02025 PanK Pantothenate kina 96.3 0.0028 6.1E-08 61.9 3.1 24 44-67 1-24 (220)
488 KOG0999 Microtubule-associated 96.3 1.9 4.2E-05 45.8 32.3 249 637-911 6-254 (772)
489 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0029 6.2E-08 66.5 3.4 21 43-63 135-155 (358)
490 PRK10575 iron-hydroxamate tran 96.3 0.0057 1.2E-07 62.5 5.4 60 969-1032 143-204 (265)
491 cd03261 ABC_Org_Solvent_Resist 96.3 0.0048 1E-07 61.8 4.8 60 969-1032 132-193 (235)
492 COG3883 Uncharacterized protei 96.3 1.2 2.7E-05 43.4 26.9 179 638-825 37-230 (265)
493 COG4136 ABC-type uncharacteriz 96.3 0.005 1.1E-07 52.7 4.0 40 35-75 22-61 (213)
494 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.0047 1E-07 61.1 4.7 60 969-1032 136-197 (218)
495 cd03232 ABC_PDR_domain2 The pl 96.3 0.0065 1.4E-07 58.4 5.4 55 973-1033 108-164 (192)
496 PRK13540 cytochrome c biogenes 96.3 0.0066 1.4E-07 58.9 5.5 59 969-1033 123-183 (200)
497 PRK09825 idnK D-gluconate kina 96.3 0.0038 8.3E-08 58.5 3.6 24 44-67 5-28 (176)
498 TIGR02673 FtsE cell division A 96.3 0.0062 1.3E-07 60.0 5.3 59 969-1033 133-193 (214)
499 cd03231 ABC_CcmA_heme_exporter 96.2 0.0065 1.4E-07 59.0 5.3 59 969-1033 121-181 (201)
500 KOG0612 Rho-associated, coiled 96.2 3.9 8.3E-05 48.7 33.9 241 197-441 448-693 (1317)
No 1
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=7.4e-110 Score=898.15 Aligned_cols=1005 Identities=37% Similarity=0.592 Sum_probs=858.6
Q ss_pred CCCCceeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEE
Q 001670 15 QRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEV 94 (1034)
Q Consensus 15 ~~~~~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l 94 (1034)
+....|+|.+|+|.|||||.+..|+|+|.+|+|+|+||||||+||.||+.|||++++.+.||+++++||++|+++|.|.|
T Consensus 35 ~~~~sG~I~sI~L~NFMCHsnL~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A~IsI 114 (1074)
T KOG0250|consen 35 QRAESGKIESIHLTNFMCHSNLLIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSAKISI 114 (1074)
T ss_pred hhhhcceEEEEEEeeecccccceeccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcceEEEE
Confidence 44456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhhhcC
Q 001670 95 ELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSG 173 (1034)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l~~~ 173 (1034)
++.|.|.++|.|++||+.|+|.|+|. +++..|..++.+|++|+.+..|+..++.+|||+++||++||+|+.+++||...
T Consensus 115 tL~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~ 194 (1074)
T KOG0250|consen 115 TLSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANS 194 (1074)
T ss_pred EEecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcC
Confidence 99999999999999999999999999 55554445578999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001670 174 NDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWS 253 (1034)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1034)
.|.+.|++|+.++.|+++...+..+.+.+......+...+..+..+++++...++.+..++..+.+...+..+..++.|.
T Consensus 195 ~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~ 274 (1074)
T KOG0250|consen 195 NPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWA 274 (1074)
T ss_pred ChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 254 WVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKL 333 (1034)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1034)
.+.....++..+...+...+.....+++.++.....+..+...+.+.++++..+.........++..+...+..+..+..
T Consensus 275 ~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~ 354 (1074)
T KOG0250|consen 275 WVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVN 354 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001670 334 ELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKE 413 (1034)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 413 (1034)
+++..+....+.+...+..+..+++.+..+.++.......++.+.+.++..+..+++.++..+..+..+.+.+..++...
T Consensus 355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988876777788888899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhhccCCCCCCccccccceeccCCCChHH
Q 001670 414 KNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAP 493 (1034)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ 493 (1034)
+.+...+...+..++..+......++.+.....+.+..|+ +.++.++..|......|..+|.||+|.+|.+.+ ++|+.
T Consensus 435 ~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~-~KWa~ 512 (1074)
T KOG0250|consen 435 EEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKE-PKWAL 512 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhcCCCCCCCCccceeEecC-cHHHH
Confidence 9999999999999999999999999999999999999999 999999999999888888999999999999999 99999
Q ss_pred HHHHHHhccccceeecchhhHHHHHHHHHHhCCCC--ccEEEeecCCCCCCCCCCCCCCCCCCccccceecCcHHHHHHh
Q 001670 494 AVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNH--LQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVL 571 (1034)
Q Consensus 494 aie~~l~~~l~~~vv~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 571 (1034)
+|+.+||+.+.+|+|.+..|+..+..+++++.++. +++++..+. +..++.+..|...+|++++.|.+++|.|.++|
T Consensus 513 aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~--~~~y~~~~~p~~~~pTil~~le~ddp~V~N~L 590 (1074)
T KOG0250|consen 513 AIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFT--PFDYSVGRNPGYEFPTILDALEFDDPEVLNVL 590 (1074)
T ss_pred HHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCC--ccccccccCCCCCCCceeeeeecCChHHHHHh
Confidence 99999999999999999999999999999877653 666666553 33444455555558999999999999999999
Q ss_pred hccCCccEEEEeCChHHHHHHhhhc-CCCCcceEEccCCCeeeecCCcc---cccccccccCCccccCCHHHHHHHHHHH
Q 001670 572 VDMGSAERQVLVRDYDVGKAVAFEQ-RISNLKEVYTLDGHKMFSRGSVQ---TILPLNRRLRTGRLCGSYDEKIKDLERA 647 (1034)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 647 (1034)
+|..+++..+++.+...|..++... .+.++..++|++|.....+|... ++...... +++.........|..++.+
T Consensus 591 ID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r-~~~~~~~s~d~~ie~le~e 669 (1074)
T KOG0250|consen 591 IDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRAR-RPGVDEFSFDDEIEDLERE 669 (1074)
T ss_pred hhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCC-CccccchhHhHHHHHHHHH
Confidence 9999999999999966666655544 36678899999998776666521 11111111 2345566788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHH
Q 001670 648 ALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQ 727 (1034)
Q Consensus 648 l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~ 727 (1034)
+..++.++..+.....+++..++.++..+..+...+.+.+..+.....++.++++.... ...-...++++..++....
T Consensus 670 ~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~--~~~~~~~~~~l~~ei~~~~ 747 (1074)
T KOG0250|consen 670 ASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEE--KQVDISKLEDLAREIKKKE 747 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhcchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888884111 0001234566666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHH
Q 001670 728 EEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGA 807 (1034)
Q Consensus 728 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1034)
.+|+.....+.++...+..+..+...+...+......+......+..+..++......+.........++..+ ......
T Consensus 748 ~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~-K~~l~~ 826 (1074)
T KOG0250|consen 748 KEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKL-KSRLEE 826 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHH-HHhhHH
Confidence 7777777778888888888777777777777777766766667777777777766666666555555566555 335556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChh--hhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 001670 808 IKEAESQYRELELLRQDSCRKASVICPES--EIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKE 885 (1034)
Q Consensus 808 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~e~~~~~~~~~~ 885 (1034)
+...+..+..+...+.+....+...||+. ++..+ +....++...+.++...+..++... .....+...+-...
T Consensus 827 l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~----~~~~~eik~ei~rlk~~i~~~ee~~-~~~~e~~~~~~~~~ 901 (1074)
T KOG0250|consen 827 LKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEAL----GKTVAEIKREIKRLKRQIQMCEESL-GELEELHRGLHEAR 901 (1074)
T ss_pred HHHHHHHHHhhhcchhhhCchhhhhCccccchhhcc----cchHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHh
Confidence 66666677777766666666777777765 33222 3356788888888888888766553 33344444433344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEEeeccCceeEEEEecCCCCCC
Q 001670 886 HKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASS 965 (1034)
Q Consensus 886 ~~~~~l~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~i~~~~~~~F~~~~~~~g~~g~~~~~~~~~~l~i~v~~~~~~~~ 965 (1034)
..+.....-+..+.+.+..+...+..+|..|......++......|..+++.+|+.|.+.++|....+++.|++|++...
T Consensus 902 ~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg~l~~~~e~ktl~i~v~~~~~~~~ 981 (1074)
T KOG0250|consen 902 KELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFSGKLEFDHEEKTLSISVKLPTSGNE 981 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeecccccccchhhccCCCCcc
Confidence 44444444444468888888889999999999999999999999999999999999999999999999999966655545
Q ss_pred CcccCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 966 SNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 966 ~~~~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+++.++..||||||||+|+||++|||.++.|||++|||||||| |||++++++||++|...+ +|||+|
T Consensus 982 ~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~-~Q~Ifi 1050 (1074)
T KOG0250|consen 982 KAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKG-RQFIFI 1050 (1074)
T ss_pred cccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEE
Confidence 7799999999999999999999999999999999999999999 999999999999999987 999998
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-87 Score=808.75 Aligned_cols=969 Identities=21% Similarity=0.318 Sum_probs=563.3
Q ss_pred eeEeEEEEEecccc-ccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCce------EEE
Q 001670 20 GTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSY------AMV 92 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~------a~v 92 (1034)
|+|++|.+.||+|| ++++|+|+||+|+|+||||||||||+|||+||||..+.+.+|++++.|+|+.|+.. |.|
T Consensus 1 m~lk~i~l~gFKSF~~~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V 80 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEV 80 (1163)
T ss_pred CeeeEEEEECcccCCCCeeeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEE
Confidence 78999999999999 55889999999999999999999999999999999999999999999999999876 999
Q ss_pred EEEEEecCCCCCCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhhh
Q 001670 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1034)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l~ 171 (1034)
+|+|+|.+ .+.|..|+ +|+|+|+++ +|.|.|+| ||..+ +.++|.++|..+|++..+| +|++||++.+|+.
T Consensus 81 ~l~fdN~d--~~~~~~~~-ei~v~Rri~r~g~S~Y~I---Ng~~~--~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~ 151 (1163)
T COG1196 81 ELTFDNSD--NTLPLEYE-EISVTRRIYRDGESEYYI---NGEKV--RLKDIQDLLADSGIGKESY-SIVSQGKVEEIIN 151 (1163)
T ss_pred EEEEeCCC--CcCCcccc-eEEEEEEEEEcCCcEEEE---CCcEe--eHHHHHHHHHhcCCCCCCC-ceeecccHHHHHc
Confidence 99999986 45666665 899999999 88899999 46555 5679999999999999988 9999999999998
Q ss_pred cCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001670 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLA 251 (1034)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1034)
+ .|.++..++.+++++..+..........+......+..+...+..+..+++.|+.+.+...++..+..++..++..+.
T Consensus 152 ~-kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 152 A-KPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred C-CHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 001670 252 WSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVR-------RRKDELQQS 324 (1034)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~ 324 (1034)
+..+.....++..+..++..++..+..+...+......+..+...+.++...+..+......+. ..+..+...
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777777777777666666666666666655555554444433222222 222222111
Q ss_pred HHHHHHH--------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhh
Q 001670 325 ISLATKE--------------KLELEGELVRN-------TSYMQKMVNRVKGLEQQVH-----------DIQEQHVRNTQ 372 (1034)
Q Consensus 325 ~~~~~~~--------------~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~ 372 (1034)
+...... +......+... ......+......++.... .+...+ ....
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 389 (1163)
T COG1196 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL-AELE 389 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHH
Confidence 1111111 11111111111 1111111111111111111 111100 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHH-------HhHHHHHH-----------
Q 001670 373 AEESEIEAKLKELQCEIDAANITLSRMKEED-------SALSEKLSKEKNEIRR-------ISDEIEDY----------- 427 (1034)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~-------l~~~~~~~----------- 427 (1034)
.+...+..++..+..+++.+...+..+...+ ..+..+...+..++.. +...+..+
T Consensus 390 ~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (1163)
T COG1196 390 AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELEREL 469 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222222222222222222222222 1111111111111111 11111111
Q ss_pred ----------HHHHHHHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhhccCCCCCCccccccceeccCCCChHHHHHH
Q 001670 428 ----------DKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQ 497 (1034)
Q Consensus 428 ----------~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~i~~~~~~~~~~aie~ 497 (1034)
...+..+...+..+...... + ..+..+. ...... ..+++|++++++.++ ++|..|++.
T Consensus 470 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~----~--~~~~~~~---~~~~~~-~~Gv~G~v~~li~v~--~~y~~Aie~ 537 (1163)
T COG1196 470 AELQEELQRLEKELSSLEARLDRLEAEQRA----S--QGVRAVL---EALESG-LPGVYGPVAELIKVK--EKYETALEA 537 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----h--hhHHHHH---HHHhcc-CCCccchHHHhcCcC--hHHHHHHHH
Confidence 11111111111111111110 0 1111111 111122 356899999999985 699999999
Q ss_pred HHhccccceeecchhhHHHHHHHHHHhCCCCccEEEeecCCCCCCCCCCCCCCCCCCccccceecCc---HHHHHHhhcc
Q 001670 498 AIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDN---PTVINVLVDM 574 (1034)
Q Consensus 498 ~l~~~l~~~vv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~l~~~ 574 (1034)
++|+.+.++||++..++..+..+++....++.+|+|++...+....+... .+..++.+++.+.+++ +.+..+
T Consensus 538 alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~-~~g~~~~a~dli~~d~~~~~~~~~~---- 612 (1163)
T COG1196 538 ALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA-APGFLGLASDLIDFDPKYEPAVRFV---- 612 (1163)
T ss_pred HcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc-ccchhHHHHHHhcCCHHHHHHHHHH----
Confidence 99999999999999999999999999999999999988655433222221 1223444567777776 333333
Q ss_pred CCccEEEEeCChHHHHHHhhhcCCCCcceEEccCCCeeeecCCcccccccccccCC-ccccCCHHHHHHHHHHHHHHHHH
Q 001670 575 GSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRT-GRLCGSYDEKIKDLERAALHVQE 653 (1034)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~ 653 (1034)
++++++|++++.|..+......+ .++||++|+.+.++|.++++......... ......+..++..+...+..+..
T Consensus 613 --l~~t~Iv~~l~~A~~l~~~~~~~--~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 688 (1163)
T COG1196 613 --LGDTLVVDDLEQARRLARKLRIK--YRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEE 688 (1163)
T ss_pred --hCCeEEecCHHHHHHHHHhcCCC--ceEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999888765322 38999999999999988777222211000 00000122333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHH--------------HHHHhhhh
Q 001670 654 EAQQCRKRKRDSEERLQDLQQHQQNV-------KRRCF-------SAERNRMSKELAF--------------QDVKNSFA 705 (1034)
Q Consensus 654 ~l~~l~~~~~~l~~~~~~~~~~~~~~-------~~~~~-------~l~~~~~~~~~~~--------------~~l~~~~~ 705 (1034)
.+..+......+...+.+++..+..+ ...+. .+...+..+...+ ..++..+.
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 768 (1163)
T COG1196 689 ELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222211111 11111 1111111111111 11111111
Q ss_pred ccCCCCCCcchhHHHHHHHHHH-------HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001670 706 ADAGPPSASAVDEISQEISNIQ-------EEIQEKEIILEKLQ--------------FSMNEAEAKVEDLKLSFQSLCES 764 (1034)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~l~-------~~~~~l~~~~~~l~--------------~~~~~~~~~~~~~~~~~~~~~~~ 764 (1034)
. .......+...+..+. ..+..+...+..+. .....+..++..+..++..+...
T Consensus 769 ~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~ 843 (1163)
T COG1196 769 S-----LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843 (1163)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0011111111111111 11111111111111 11111111222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh---
Q 001670 765 AKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMR------TRVVGAIKEAESQYRELELLRQDSCRKASVICPE--- 835 (1034)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--- 835 (1034)
+..+...+..+...+..+...+..+...+..+...+. ..+...+..+...+..+...+..+......++..
T Consensus 844 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 923 (1163)
T COG1196 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923 (1163)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222222222222222222220 2222223333333333322222222221111000
Q ss_pred ----h--hhhhcCCCCCCCHH-HHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 836 ----S--EIEALGGWDGSTPE-QLSAQVNRLNQRLKHESH---QYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRAC 905 (1034)
Q Consensus 836 ----~--~~~~~~~~~~~~~~-~l~~~l~~l~~~l~~~~~---~~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l 905 (1034)
. ....+......... .+..++..+...+..+.+ .+...|+++..+|+.+..++.++...+..+...|..+
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~ 1003 (1163)
T COG1196 924 LEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEEL 1003 (1163)
T ss_pred HHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001111122222 677888888887666433 3345566666777777777777777777777777555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEEeeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHH
Q 001670 906 REALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLC 985 (1034)
Q Consensus 906 ~~~l~~~~~~~~~~~~~i~~~~~~~F~~~~~~~g~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~la 985 (1034)
+... ...|..+|..|+..|+..|..+|+ |++|.|.++.++++++-+|.+...|||+++.+++.|||||||++|||
T Consensus 1004 d~~~---~~~f~~~f~~In~~F~~if~~L~~--GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlA 1078 (1163)
T COG1196 1004 DKEK---RERFKETFDKINENFSEIFKELFG--GGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALA 1078 (1163)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHhCC--CCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHH
Confidence 5433 346889999999999999999998 88999999876664443333333457999999999999999999999
Q ss_pred HHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 986 FALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 986 ll~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
||||||.++|||||||||||||| +|+.....+|.+++ +.+|||||
T Consensus 1079 llFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s---~~sQFIvI 1125 (1163)
T COG1196 1079 LLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS---KETQFIVI 1125 (1163)
T ss_pred HHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC---cCCeEEEE
Confidence 99999999999999999999999 99999999999976 68999998
No 3
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.1e-78 Score=639.14 Aligned_cols=977 Identities=16% Similarity=0.224 Sum_probs=555.2
Q ss_pred eeEeEEEEEeccccc-ccee-EcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCC----ceEEEE
Q 001670 20 GTITRVRLENFMCHS-SLQI-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC----SYAMVE 93 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~-~~~i-~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~----~~a~v~ 93 (1034)
|+|++|.|.||+||. ++.| .|+|.||+|||-||||||||+|+|||+||...-...|++++.++|+.+. +.|.|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 899999999999994 5566 8999999999999999999999999999999999999999999998765 899999
Q ss_pred EEEEecCCCCCCcccC--CCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhh
Q 001670 94 VELKNRGEDAFKPEIF--GDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (1034)
Q Consensus 94 l~~~~~~~~~~~~~~~--~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l 170 (1034)
|+|+|.++.. .|..| .++|+|+|.|. +|.+.|+|| |+..+ ...+.++|.+.|++++||+|.+.||++...|
T Consensus 81 VvFdNtdk~~-SP~G~E~h~EIsVtRqIv~gG~~KylIN---Gh~a~--~~~vq~lF~SVqLNvNNP~FLIMQGrITkVL 154 (1174)
T KOG0933|consen 81 VVFDNTDKAR-SPLGYEHHDEISVTRQIVVGGTNKYLIN---GHLAQ--NSKVQDLFCSVQLNVNNPHFLIMQGRITKVL 154 (1174)
T ss_pred EEecCCCccc-CCCCcccCCeeEEEEEEEecCceeEEEc---CeeCc--hhHHHHHHHHhcccCCCCceEEecccchhhh
Confidence 9999987643 33333 47899999999 999999995 55553 4579999999999999999999999999999
Q ss_pred hcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 171 HSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK-PTEKELSELQRKIRNMEHVEEITQDLQRLKKK 249 (1034)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 249 (1034)
.+ .|.+.+-+..++++...++..-+.+..-+...+..+++...-+. .+...+..++++...+-++..+...++.+...
T Consensus 155 NM-Kp~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~ 233 (1174)
T KOG0933|consen 155 NM-KPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRI 233 (1174)
T ss_pred cC-CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 55688888888888777777777777777777777777665442 35556777888888888888888888887777
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Q 001670 250 LAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEI---------------AVMVEKTSEV 314 (1034)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~ 314 (1034)
....+|............++.+....+..+.+.......++..++.++.+++.+. ..+...+...
T Consensus 234 ~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~ 313 (1174)
T KOG0933|consen 234 CIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITRE 313 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHH
Confidence 7666666666666666666666666555555555555555555555554443311 1111111111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----------
Q 001670 315 -------RRRKDELQQSISLATKEKLELEGELVRNTSYMQK-------MVNRVKGLEQQVHDIQEQHVR----------- 369 (1034)
Q Consensus 315 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~----------- 369 (1034)
...+......+..+...+.+....+...+..+.. +..........+...+..+..
T Consensus 314 ~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~ 393 (1174)
T KOG0933|consen 314 ETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDE 393 (1174)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 1111111222222222222222222222222222 111111111111111111100
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 001670 370 --NTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQT- 446 (1034)
Q Consensus 370 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~- 446 (1034)
..+.++......+..+..++....-.+..+..++.....+......+.......++..+..+..++.++..+.....
T Consensus 394 e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~ 473 (1174)
T KOG0933|consen 394 EKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ 473 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 01112222223333333333333333333333333333333333333333333333333333333333322211100
Q ss_pred -----CccccCCcccHHHHHHHHHhhcc--------------CCC-CCCccccccceeccCCCChHHHHHHHHhccccce
Q 001670 447 -----NKVTAFGGDRVISLLRAIERHHH--------------KFK-SPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAF 506 (1034)
Q Consensus 447 -----~~~~~~~~~~~~~~~~~i~~~~~--------------~~~-~~~~g~~~~~i~~~~~~~~~~aie~~l~~~l~~~ 506 (1034)
.....+. ..+..+.+.+..... .|. ..|.|.++.++.+++ ..|.+|++.+.|+.+.++
T Consensus 474 ~e~l~q~~~~l~-~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd-~~~~tAle~~aGgrLynv 551 (1174)
T KOG0933|consen 474 EEALKQRRAKLH-EDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKD-RSYATALETTAGGRLYNV 551 (1174)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCc-chHHHHHHHHhcCcceeE
Confidence 0000000 112222222221111 111 126789999999998 899999999999999999
Q ss_pred eecchhhHHHHHHHHHHhC-CCCccEEEeecCCCCCCCCCC-----CCCCCCCCccccceecCcHHHHHHhhccCCccEE
Q 001670 507 IVTDHKDALLLRGCAREAN-YNHLQIIIYDFSRPRLSLPHH-----MLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQ 580 (1034)
Q Consensus 507 vv~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 580 (1034)
||++...+..+.. +-. ..+++++|++........+.. .+.+.+....++.+.+++..- .++. +.+|.+
T Consensus 552 Vv~te~tgkqLLq---~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~-~ame--fvFG~t 625 (1174)
T KOG0933|consen 552 VVDTEDTGKQLLQ---RGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELK-KAME--FVFGST 625 (1174)
T ss_pred EeechHHHHHHhh---cccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHH-HHHH--HHhCce
Confidence 9999988876643 111 146788888754322111110 022244556677777765322 2111 235789
Q ss_pred EEeCChHHHHHHhhhcCCCCcceEEccCCCeeeecCCcccccccccccCCccc--cCCHHHHHHHHHHHHHHHHHHHHHH
Q 001670 581 VLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRL--CGSYDEKIKDLERAALHVQEEAQQC 658 (1034)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~l~~l 658 (1034)
+||++.+.|+.+++.+.++. +.||++|+++.+.|.++++....+.-....+ ...++.++...+.++..++.++..+
T Consensus 626 lVc~~~d~AKkVaf~~~i~~--rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~l 703 (1174)
T KOG0933|consen 626 LVCDSLDVAKKVAFDPKIRT--RSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSL 703 (1174)
T ss_pred EEecCHHHHHHhhccccccc--ceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876432 6789999999998887776554322100000 1122333333333333333333222
Q ss_pred HHHHHH---HHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 001670 659 RKRKRD---SEER--------------------------LQDLQQHQQNVKRRCFSAERNRMSKELAF------------ 697 (1034)
Q Consensus 659 ~~~~~~---l~~~--------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------ 697 (1034)
+..... +..+ +..+..++.+.+.++......+......+
T Consensus 704 e~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~ 783 (1174)
T KOG0933|consen 704 EAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA 783 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 221111 1111 11111112222222221111111111111
Q ss_pred -------------HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 698 -------------QDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCES 764 (1034)
Q Consensus 698 -------------~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1034)
..+...++. ..........+...+.-+.+.++..+...+..+..+...+..+..++..+...
T Consensus 784 ~re~rlkdl~keik~~k~~~e~-----~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 784 NRERRLKDLEKEIKTAKQRAEE-----SSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred hhHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 12222222233333333333344444444444444433333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHH------HhHHHHHHHH-------HHHHHHHHHHHHH
Q 001670 765 AKEEVDTFEAAEKELMEIEKNLQTSESEK-------AHYEDVMR------TRVVGAIKEA-------ESQYRELELLRQD 824 (1034)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~-------~~~~~~l~~~~~~ 824 (1034)
+.........+..++......+.....++ ..+..... ..+..++..+ ...++.+..+..|
T Consensus 859 v~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~w 938 (1174)
T KOG0933|consen 859 VDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEW 938 (1174)
T ss_pred HHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccc
Confidence 33333333333333333332222222222 22222110 1122222222 2223333333333
Q ss_pred HHHHHHhhCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 825 SCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHES----HQYSESIEDLRMLYEEKEHKILRKQQTYQAFRE 900 (1034)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~----~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~ 900 (1034)
+..+...+.......++.. ..+.+...++..++.....++ +.+...++..+..+.+++.+.+.++.....+.+
T Consensus 939 i~~ek~~fgk~gt~yDf~~---~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~k 1015 (1174)
T KOG0933|consen 939 IGDEKRLFGKKGTDYDFES---YDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKK 1015 (1174)
T ss_pred hhHHHHhhcCCCCcccccc---CCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3322233333333333333 344555666666666655543 344556788888899999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEEeeccC---ceeEEEEecCCCCCCCcccC-CCCCCc
Q 001670 901 KVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEE---KTLSIEVKMPQDASSSNVRD-TRGLSG 976 (1034)
Q Consensus 901 ~i~~l~~~l~~~~~~~~~~~~~i~~~~~~~F~~~~~~~g~~g~~~~~~~~---~~l~i~v~~~~~~~~~~~~~-~~~lSG 976 (1034)
.|..+++ ...+++..++..++..|..+|..+++ |..+.|...... +|+++.|.| |..|.. ++.|||
T Consensus 1016 tI~~lDe---~k~~~L~kaw~~VN~dFG~IFs~LLP--ga~AkL~Ppeg~~~~dGLEvkV~~-----G~iWKeSL~ELSG 1085 (1174)
T KOG0933|consen 1016 TIEKLDE---KKREELNKAWEKVNKDFGSIFSTLLP--GAMAKLEPPEGKTVLDGLEVKVKF-----GGIWKESLSELSG 1085 (1174)
T ss_pred HHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHhCC--CccccccCCCCCccccceEEEEEe-----CccHHHHHHHhcC
Confidence 8866663 23457888888999999999999887 544444433222 478999998 555555 789999
Q ss_pred ccchHHHHHHHHHhhhhcCCCeeEeehhhhhh-hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 977 GERSFSTLCFALALHEMTEAPFRAMDEFDVFM-VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 977 GEks~~~lall~al~~~~~~Pf~vlDEiD~~~-~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|+||++||||+||+..+.|+||||||||||+| ..+...+..|+.. +++++|||||
T Consensus 1086 GQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkt--hF~~sQFIVV 1141 (1174)
T KOG0933|consen 1086 GQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKT--HFTHSQFIVV 1141 (1174)
T ss_pred chHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHh--hCCCCeEEEE
Confidence 99999999999999999999999999999999 8888888889874 6889999998
No 4
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-77 Score=629.16 Aligned_cols=977 Identities=16% Similarity=0.230 Sum_probs=531.7
Q ss_pred eeEeEEEEEeccccccc-ee-EcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCc----eEEEE
Q 001670 20 GTITRVRLENFMCHSSL-QI-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVE 93 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~-~i-~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~----~a~v~ 93 (1034)
|+|+.|.|.||+||.+. .+ +|+|+.|+|+|.||||||+++.||+|||.+..+. ++...-..+++.|++ +|+|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~h-Lk~E~R~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSH-LKREERQGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhh-cCHHHHhhhhhcCCCcceEEEEEE
Confidence 89999999999999654 45 5999999999999999999999999999877665 343444678998874 69999
Q ss_pred EEEEecCCCCCCcccCCCeEEEEEEeecCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhhhcC
Q 001670 94 VELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSG 173 (1034)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l~~~ 173 (1034)
|+|+|++.. + | ..+.+++|.|+++-.+..|++ +++.|+ ..++-.++.+.|++..|||++++||++..+.. +
T Consensus 80 IvF~nsdnr-~-~-~~k~Ev~lrRtVGlKKDeY~l---D~k~Vt--k~evvnLLESAGFSrsNPYyIV~QGkI~~La~-a 150 (1200)
T KOG0964|consen 80 IVFDNSDNR-L-P-RGKSEVSLRRTVGLKKDEYFL---DNKMVT--KGEVVNLLESAGFSRSNPYYIVPQGKINELAN-A 150 (1200)
T ss_pred EEEeCcccc-c-C-CCCCeEEEEEeecccchhhhc---cccccc--HHHHHHHHHhcCcccCCCceEeechhhHHhhc-C
Confidence 999998653 2 2 456789999999988899999 677775 57999999999999999999999999999554 5
Q ss_pred CchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001670 174 NDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWS 253 (1034)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1034)
++..+++++.+.++..-+.......-.-+.+....-..+..-+..+...+..++.+.+.++.|+.+......++..+...
T Consensus 151 kD~eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdr 230 (1200)
T KOG0964|consen 151 KDSERLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDR 230 (1200)
T ss_pred CcHHHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhh
Confidence 88999999999887666665555555555555555555556666666777777777777777777777766666666655
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHH
Q 001670 254 WVYDVDRQLKEQTLKIEKLKDR-------IPRCQAKIDSRHSILESLRDCFMKKKA---------------------EIA 305 (1034)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~l~ 305 (1034)
++.+...++..+.......-.. +......+..+..++.+++..+..+.. .+.
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 5555555554444332221111 111222222222222222222222222 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 001670 306 VMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHV----------------- 368 (1034)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------- 368 (1034)
.++.++..-.+........+..+...+.+.+.++....-....+..+-..+..++..++....
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~e 390 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEE 390 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHH
Confidence 222222111111111111222222222233333332222222222222222222222221110
Q ss_pred -----------------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 001670 369 -----------------------RNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIE 425 (1034)
Q Consensus 369 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 425 (1034)
.....++..++..+....+++..+...+.....++.++......+..+++.+.....
T Consensus 391 RDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk 470 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRK 470 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111222222222222222222222222222222332333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----CccccCCcccHHHHHHHHHhhccCCC-CCCccccccceeccCCCChHHHHHHHHh
Q 001670 426 DYDKKCREIRSEIRELQQHQT----NKVTAFGGDRVISLLRAIERHHHKFK-SPPIGPIGSHVTLVNGDTWAPAVEQAIG 500 (1034)
Q Consensus 426 ~~~~~~~~l~~~l~~l~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~g~~~~~i~~~~~~~~~~aie~~l~ 500 (1034)
.++.+-..++..+..+..... +.....+ ..+...+..+......+. .+++|++++++.|+ +.|.+|++.+.|
T Consensus 471 ~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~-r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~--~~f~tavEvtaG 547 (1200)
T KOG0964|consen 471 ELWREEKKLRSLIANLEEDLSRAEKNLRATMN-RSVANGIDSVRKIKEELKPNGVFGTVYELIKVP--NKFKTAVEVTAG 547 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhhhHHHHHHHHHhcccccceehhhhhcCC--HHHHhHHhhhcc
Confidence 333333333333332222111 0111111 222222333333222233 46899999999985 689999999999
Q ss_pred ccccceeecchhhHHHHHHHHHHhCCCCccEEEeecCCCCCCCCCCCCCC-CCCCccccceecCcHHHHHHhhccCCccE
Q 001670 501 RLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPH-TKHPTTLSVLQSDNPTVINVLVDMGSAER 579 (1034)
Q Consensus 501 ~~l~~~vv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 579 (1034)
+.|+++||++.+.+..+...+....+|+++|+|++.... +....|. ...-++++.|.+++.. ..++. +.+++
T Consensus 548 NsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~----r~v~yp~~sdaiPli~kl~y~p~f-dka~k--~Vfgk 620 (1200)
T KOG0964|consen 548 NSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA----RDVEYPKDSDAIPLISKLRYEPQF-DKALK--HVFGK 620 (1200)
T ss_pred cceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch----hhccCCCCCCccchHHHhCcchhh-HHHHH--HHhCc
Confidence 999999999999999888888887889999999875433 2222332 4456788888887532 12221 22567
Q ss_pred EEEeCChHHHHHHhhhcCCCCcceEEccCCCeeeecCCcccccccccccCCc--cccCCHHHHHHHHHHHHHHHHHHHHH
Q 001670 580 QVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTG--RLCGSYDEKIKDLERAALHVQEEAQQ 657 (1034)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~l~~ 657 (1034)
+++|.++..|...+....+ .++|++|+.++..|++++++......+.. .-......++.+++..+..++..+..
T Consensus 621 tivcrdl~qa~~~ak~~~l----n~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~ 696 (1200)
T KOG0964|consen 621 TIVCRDLEQALRLAKKHEL----NCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIED 696 (1200)
T ss_pred eEEeccHHHHHHHHHhcCC----CeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877665 89999999999999988877644321110 01112233334444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhhcc-------CC---CCC-
Q 001670 658 CRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELA--------------FQDVKNSFAAD-------AG---PPS- 712 (1034)
Q Consensus 658 l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~l~~~~~~~-------~~---~~~- 712 (1034)
...++..+...+..++..+.........+..++..+..+ +..+...+... .. ..+
T Consensus 697 ~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~ 776 (1200)
T KOG0964|consen 697 IDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELF 776 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Confidence 333333333333333333222222222222222222221 11111111100 00 000
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH-----HHHHHHHHHHH
Q 001670 713 ASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEA---------------KVEDLKLSFQSL-----CESAKEEVDTF 772 (1034)
Q Consensus 713 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~-----~~~~~~~~~~~ 772 (1034)
..--.+...++..+..+|..+..++..+......+.. .+.++...+..+ ...+.....++
T Consensus 777 sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el 856 (1200)
T KOG0964|consen 777 SQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSEL 856 (1200)
T ss_pred hhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHH
Confidence 0000011122333333333333333332222222111 111222221111 11111222222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001670 773 EAAEKELMEIEKNLQTSESEKAHYEDVMRTRVV--------------------GAIKEAESQYRELELLRQDSCRKASVI 832 (1034)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~ 832 (1034)
......+.....++..+...+......+ .... ..++.+......|.....++..++..+
T Consensus 857 ~~~~~~~e~~~~el~~l~~~i~~~~a~~-~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~l 935 (1200)
T KOG0964|consen 857 ESEEKRVEAAILELKTLQDSIDKKKAEI-KEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREECCEKIREL 935 (1200)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222222222222222222222221 1111 111111112222222222333333332
Q ss_pred CChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 833 CPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDL---RMLYEEKEHKILRKQQTYQAFREKVRACREAL 909 (1034)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~e~~---~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~l 909 (1034)
.+.. ...+..|......++..++.++..+++.+...+...++++ .++.+++..+. ++++.-...|.+|...+
T Consensus 936 G~Lp-~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~----eELd~s~~sI~eLi~vL 1010 (1200)
T KOG0964|consen 936 GVLP-EDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQ----EELDRSKDSILELITVL 1010 (1200)
T ss_pred CCCc-hHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHH----HHhccchhHHHHHHHHH
Confidence 2211 1123335567889999999999999988765544444333 33333333333 34455556666666777
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCceeEEe-------e-------ccC------------ceeEEEEecCCC
Q 001670 910 DSRW-GKFQRNATLLKRQLTWQFNGHLGKKGISGKINI-------N-------YEE------------KTLSIEVKMPQD 962 (1034)
Q Consensus 910 ~~~~-~~~~~~~~~i~~~~~~~F~~~~~~~g~~g~~~~-------~-------~~~------------~~l~i~v~~~~~ 962 (1034)
+.+. +++..+|..+.++|+..|..+.+ |+.|.+.. | .++ .|++|.|+|+++
T Consensus 1011 dqrK~eai~~TFkqV~knFsevF~~LVp--~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFnsk 1088 (1200)
T KOG0964|consen 1011 DQRKYEAIDLTFKQVKKNFSEVFSRLVP--GGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFNSK 1088 (1200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhCC--CCceeehhhccccccccccccccccccccccccchhhccceeEEEEeecC
Confidence 7664 58999999999999998888877 66664332 1 111 358899999754
Q ss_pred CCCCcccCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh-hhHHHHHHHHHHhhcCCCCceEEE
Q 001670 963 ASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM-VSFYINYVFSIDFSGYVPCNFFYL 1032 (1034)
Q Consensus 963 ~~~~~~~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~-~~~~~~~~~l~~~~~~~~~~q~~~ 1032 (1034)
. .....|.+||||+||++||||+|||+.|+|+|||+||||||+| +..+-++..|+.... .+.|||+
T Consensus 1089 q--~E~~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS--~~aQFI~ 1155 (1200)
T KOG0964|consen 1089 Q--GETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELS--DSAQFIT 1155 (1200)
T ss_pred c--cHHHHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHh--hccceEe
Confidence 4 2566789999999999999999999999999999999999999 766666666666544 3589996
No 5
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=8.1e-78 Score=638.85 Aligned_cols=956 Identities=19% Similarity=0.245 Sum_probs=570.1
Q ss_pred CCCCCCCceeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEE
Q 001670 12 YGPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAM 91 (1034)
Q Consensus 12 ~~~~~~~~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~ 91 (1034)
++...++.|.|.+|.|+||.+|..+++.|+|.+|+|+||||||||||++|||+||||.|...||+.++..||+.|++.|+
T Consensus 12 ~~~~sf~~GsIvrI~l~NF~Ty~~~e~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~ 91 (1072)
T KOG0979|consen 12 LNYSSFPDGSIVRIELHNFLTYDHTEFLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGY 91 (1072)
T ss_pred CCcccCCCCceEEEEEeeeeeeeeeeecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccce
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhh
Q 001670 92 VEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (1034)
Q Consensus 92 v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l 170 (1034)
|+|++.+.+ +.++|+|.|. ++.|.|+|| |..+ +.++|.+++..|+|+++|+|.||||+++.+|.
T Consensus 92 IEI~l~~~~----------e~~~ItR~I~~~k~S~y~iN---~~a~--t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa 156 (1072)
T KOG0979|consen 92 IEIELKDKD----------ETLTITRLISRDKESKYFIN---DSAT--TKSEIEELVAHFNIQIDNLCQFLPQDKVKEFA 156 (1072)
T ss_pred EEEEEecCC----------CceEEEEEEeecCCcceeec---cchh--hhHHHHHHHHHHhcccCchhhhccHHHHHHHH
Confidence 999999874 4689999999 778999995 4444 55799999999999999999999999999999
Q ss_pred hcCCchhhHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 171 HSGNDKDKFKFFFKA---TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLK 247 (1034)
Q Consensus 171 ~~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 247 (1034)
.. ++...+.-...+ .++-.....|....++...+.+.+..-...+..+++.++.+...++.+.+.......+..+.
T Consensus 157 ~L-~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~ 235 (1072)
T KOG0979|consen 157 RL-SPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLE 235 (1072)
T ss_pred cC-ChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 555555444444 23556667777888888888888888888999999999999999999988888999999999
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 248 KKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISL 327 (1034)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (1034)
....|..+.....++.......+.+..++..+...+..+......++.+..+....+......+......+...-..+..
T Consensus 236 ~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~ 315 (1072)
T KOG0979|consen 236 KKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKE 315 (1072)
T ss_pred HhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888888888777777777777777777766666666666666666655555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001670 328 ATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNT-----QAEESEIEAKLKELQCEIDAANITLSRMKEE 402 (1034)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1034)
....+......++.++..-...+..+....+.+..++..+.... ..+..++..++.......... ...
T Consensus 316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~------~~~- 388 (1072)
T KOG0979|consen 316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRD------SRQ- 388 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhh------hhh-
Confidence 55555555555555555555555555555555555544332111 111222211111111110000 000
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhhccCCCCCCccccccc
Q 001670 403 DSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSH 482 (1034)
Q Consensus 403 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~ 482 (1034)
.++ ...........+.....++.......+.- ... .+..+. +.+..++.|++.+.+.|..+++||+..-
T Consensus 389 ------~id-~~~~~~~~~~~l~~~kr~~~~~~~~~~~k--~~~-~l~~~~-~d~~dAy~wlrenr~~FK~~vyeP~~m~ 457 (1072)
T KOG0979|consen 389 ------EID-AEQLKSQKLRDLENKKRKLKQNSDLNRQK--RYR-VLRQGS-SDAYDAYQWLRENRSEFKDEVYEPPIMT 457 (1072)
T ss_pred ------hhh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHH-HhccCc-hHHHHHHHHHHHCHHHhcccccCCceEE
Confidence 000 00000000111111111111111111000 000 011122 6677888999999989999999998888
Q ss_pred eeccCCCChHHHHHHHHhc-cccceeecchhhHHHHHHHHHHhCC--CCccEEEeecCCCCC--CCCCCCCCCCCCCccc
Q 001670 483 VTLVNGDTWAPAVEQAIGR-LLNAFIVTDHKDALLLRGCAREANY--NHLQIIIYDFSRPRL--SLPHHMLPHTKHPTTL 557 (1034)
Q Consensus 483 i~~~~~~~~~~aie~~l~~-~l~~~vv~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 557 (1034)
+.+++ ..++.+++..+|. .+..|||.+.++...+...+.+... .....++.+...+.. ..++..+...++.+++
T Consensus 458 l~~k~-~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyl 536 (1072)
T KOG0979|consen 458 LNVKN-AEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGYL 536 (1072)
T ss_pred EecCC-hHHHHHHHcccCccccceeeeechHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHHh
Confidence 88888 9999999999986 6888999999999888877765311 111111111111100 0011111225566666
Q ss_pred cceecCcHHHHHHhhccCCccEEEEeCC-hHHHHHHhhhcCCCCcceEEccCCCeeee---cCCc---------------
Q 001670 558 SVLQSDNPTVINVLVDMGSAERQVLVRD-YDVGKAVAFEQRISNLKEVYTLDGHKMFS---RGSV--------------- 618 (1034)
Q Consensus 558 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~--------------- 618 (1034)
+.+...+..+..+|+....++.+-+... ...+...... ..-+++|.++-. .|+.
T Consensus 537 s~f~~~p~~vm~~Lc~~~~ih~IPvs~~~~~e~~~~~~~-------~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~ 609 (1072)
T KOG0979|consen 537 SNFIEAPEPVMSYLCNVSKIHRIPVSKREVEEAIVEVLQ-------NIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVI 609 (1072)
T ss_pred hhhhcCcHHHHHHHHHhccccccccCcccccHHHHHHHh-------ccccCCCchhHHHHhhcCchhhhhhhccccceee
Confidence 6665566788999998777776544322 2222211100 011112211100 0000
Q ss_pred ccccccc--cccCCccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 619 QTILPLN--RRLRTGRL----CGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMS 692 (1034)
Q Consensus 619 ~~~~~~~--~~~~~~~~----~~~~~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 692 (1034)
.+..+.. ........ ....+..+..+..++...+..+..++.+.......+......+..+..+...+...+..
T Consensus 610 ~~~~~lk~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~ 689 (1072)
T KOG0979|consen 610 TRNDPLKSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKS 689 (1072)
T ss_pred ecCCcchhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 0000000 00000000 00122233333333444444444444444444444444444444444444444444433
Q ss_pred HHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 001670 693 KELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLS--FQSLCESAKEEVD 770 (1034)
Q Consensus 693 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 770 (1034)
.+.....++..... +...+.++.. .....-........+.-.....+...-.. +........-+..
T Consensus 690 ~~~r~~~ie~~~~~---------l~~qkee~~~---~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s 757 (1072)
T KOG0979|consen 690 YQQRKERIENLVVD---------LDRQEEEYAA---SEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARS 757 (1072)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33333333322111 1111111111 11000000000000000000000000000 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhCChh------hhhhcC
Q 001670 771 TFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELEL--LRQDSCRKASVICPES------EIEALG 842 (1034)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~------~~~~~~ 842 (1034)
... .-.++..+...+..+..++... ..+...+............ .+.-+........... ....+.
T Consensus 758 ~~~-----~iea~~~i~~~e~~i~~~~~~~-~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~ 831 (1072)
T KOG0979|consen 758 NKN-----NIEAERKIEKLEDNISFLEARE-DLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELA 831 (1072)
T ss_pred HHH-----HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHH
Confidence 000 0001111111111111111111 1111111111111111110 0000000000000000 000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 843 GWDGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATL 922 (1034)
Q Consensus 843 ~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~ 922 (1034)
.. +.++.++...+..-..+... +....+.+..+|+..+.++..++..+......++.+...+....+.|...++.
T Consensus 832 e~-p~t~~eld~~I~~e~t~~~~----~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~ 906 (1072)
T KOG0979|consen 832 EE-PTTMDELDQAITDELTRALK----FENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEE 906 (1072)
T ss_pred hC-CCcHHHHHHHHHHHHHHHHH----HhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 11 55666666665544432222 23333457788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEe-----eccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhhhhcCCC
Q 001670 923 LKRQLTWQFNGHLGKKGISGKINI-----NYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAP 997 (1034)
Q Consensus 923 i~~~~~~~F~~~~~~~g~~g~~~~-----~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~~~~~~P 997 (1034)
+...++..|..+|..+|+.|.+.+ |++.|+|.|+|+|+.+.+.+.+.+.+ +||||||++|+.||+||+.++|||
T Consensus 907 ~V~~In~~Fs~~F~~mg~aGeV~L~~~~~DydkwgI~ImVkFR~s~~L~~L~sh~-QSGGERSVSTiLYLlALQ~l~~~P 985 (1072)
T KOG0979|consen 907 MVEQINERFSQLFSSMGCAGEVSLEVNPLDYDKWGIMIMVKFRDSEGLKVLDSHR-QSGGERSVSTILYLLALQELTPAP 985 (1072)
T ss_pred HHHHHHHHHHHHHhhcccCceEEeccCcccHhHhceEEEEEEccCcccccccccc-cCCcchHHHHHHHHHHHhhccCCC
Confidence 888999999999999999999877 57789999999999988877776544 699999999999999999999999
Q ss_pred eeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 998 FRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 998 f~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|+|+|||++|| .|.+++|++||..||..+++|||||
T Consensus 986 FRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFli 1023 (1072)
T KOG0979|consen 986 FRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLI 1023 (1072)
T ss_pred eeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEe
Confidence 99999999999 9999999999999999999999998
No 6
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.9e-74 Score=619.36 Aligned_cols=985 Identities=17% Similarity=0.243 Sum_probs=477.3
Q ss_pred CCCCceeEeEEEEEecccccccee--EcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCC-----
Q 001670 15 QRSGAGTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC----- 87 (1034)
Q Consensus 15 ~~~~~~~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~----- 87 (1034)
..++.+.|..|.+.||+||.+..+ +|+|.|++|+|||||||||++||+.||||-++.. .|..+++++|+.+.
T Consensus 79 ~~~~RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~k-iR~~klS~LIh~S~~~~~l 157 (1293)
T KOG0996|consen 79 AGGPRLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASK-IRSKKLSALIHKSDGHPNL 157 (1293)
T ss_pred CCCCeeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhH-HhHHHHHHHHhccCCCCCC
Confidence 336679999999999999965544 8999999999999999999999999999999876 68889999999654
Q ss_pred ceEEEEEEEEecC---CCCCCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecc
Q 001670 88 SYAMVEVELKNRG---EDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQ 163 (1034)
Q Consensus 88 ~~a~v~l~~~~~~---~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q 163 (1034)
.+|.|+|.|.--- ++.| -.+.|..++|+|+.+ +++|.|+| ||+.. +.+++..+|..-||+.++..|.+-|
T Consensus 158 ~SCsV~vhFq~iiD~~~~~~-E~vp~s~~~ItRtA~~~NsSkY~I---ngk~a--s~~~V~~lLk~~gIDleHNRFLILQ 231 (1293)
T KOG0996|consen 158 QSCSVEVHFQKIIDKPGGTY-EVVPDSEFTITRTAFRDNSSKYYI---NGKEA--SFKDVTKLLKSHGIDLEHNRFLILQ 231 (1293)
T ss_pred cceeEEEeeeeeeccCCCce-eecCCCeeEEEehhhhCCCceEeE---CCccc--cHHHHHHHHHhcCCCCccceeeeeh
Confidence 2599999998432 1222 234567899999999 89999999 56665 4579999999999999999999999
Q ss_pred hhhHHhhhcCCc------hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---
Q 001670 164 DKSREFLHSGND------KDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME--- 234 (1034)
Q Consensus 164 ~~~~~~l~~~~~------~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~--- 234 (1034)
|.+..+..++|- ...++++...-+...+...++....++..+.....+....++....+...++.-....-
T Consensus 232 GEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL 311 (1293)
T KOG0996|consen 232 GEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFL 311 (1293)
T ss_pred hhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999998877551 23344444433322222222333333333322222222222222222211111111110
Q ss_pred -----------------------HHHHHHHHHHHHHHHHhh----------HhH--------------HHHHHHHHHHHH
Q 001670 235 -----------------------HVEEITQDLQRLKKKLAW----------SWV--------------YDVDRQLKEQTL 267 (1034)
Q Consensus 235 -----------------------~~~~~~~~~~~~~~~~~~----------~~~--------------~~~~~~~~~~~~ 267 (1034)
++......+..+...+.. ..+ ..+......++.
T Consensus 312 ~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~ 391 (1293)
T KOG0996|consen 312 KKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKK 391 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000 000 000001111111
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 001670 268 KIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLAT------------------ 329 (1034)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 329 (1034)
+...++.+-...++.+..+...+..++++++.......++....+.....+..+..++..+.
T Consensus 392 ~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~ 471 (1293)
T KOG0996|consen 392 KFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLK 471 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111111111111111112222222221111111111111111111111111111111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001670 330 -------KEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEE 402 (1034)
Q Consensus 330 -------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1034)
.++...+.++..+..++.....++.-.+.++.-+.... .........+...+......+......+..+...
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~-~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~ 550 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRH-ETGLKKVEELKGKLLASSESLKEKKTELDDLKEE 550 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111111122222222222222222222211111 0111112222222222222222222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhhc--cCCCCCCccccc
Q 001670 403 DSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHH--HKFKSPPIGPIG 480 (1034)
Q Consensus 403 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~g~~~ 480 (1034)
+..+..++.+....+..+..+...+...+..+..++..++...... ..-..+++.+.... ++ ..+++|.+|
T Consensus 551 l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~------~s~~kVl~al~r~kesG~-i~Gf~GRLG 623 (1293)
T KOG0996|consen 551 LPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS------RSRNKVLDALMRLKESGR-IPGFYGRLG 623 (1293)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHcCC-CCccccccc
Confidence 3333333333333333333333434444444444444433321110 11112333333221 22 245789999
Q ss_pred cceeccCCCChHHHHHHHHhccccceeecchhhHHHHHHHHHHhCCCCccEEEeecCCCC-CCCCCCCCCCCCCCccccc
Q 001670 481 SHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPR-LSLPHHMLPHTKHPTTLSV 559 (1034)
Q Consensus 481 ~~i~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 559 (1034)
++-.+ | ++|..||.. ++..|.++||++..++..|..+++.++.++.+|++++..... ....+ ..++.++|.+++.
T Consensus 624 DLg~I-d-~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~-i~tpenvPRLfDL 699 (1293)
T KOG0996|consen 624 DLGAI-D-EKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAP-ITTPENVPRLFDL 699 (1293)
T ss_pred ccccc-c-hHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCC-CCCCCCcchHhhh
Confidence 88776 5 799999998 667799999999999999999999999999999999864421 11111 2233567889999
Q ss_pred eecCcHHHHHHhhccCCccEEEEeCChHHHHHHhhhcCCCCcceEEccCCCeeeecCCcccccccccccCCccc------
Q 001670 560 LQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRL------ 633 (1034)
Q Consensus 560 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 633 (1034)
+.+.++.+..++.. .+.+++||++++.|.++++....++ +++|++|.++..+|.+++++....+...+..
T Consensus 700 v~~~d~~~r~aFYf--aLrdtLV~d~LeQAtRiaygk~rr~--RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~ 775 (1293)
T KOG0996|consen 700 VKCKDEKFRPAFYF--ALRDTLVADNLEQATRIAYGKDRRW--RVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGV 775 (1293)
T ss_pred hccCCHHHHHHHHH--HHhhhhhhcCHHHHHHHhhcCCCce--EEEEecceeecccccccCCCCcCCCCCCCCccccCCC
Confidence 99987655554442 2457899999999999998775444 7999999999999988776543322111111
Q ss_pred ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 001670 634 ----CGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAG 709 (1034)
Q Consensus 634 ----~~~~~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 709 (1034)
...++..+.........+..++..+......++.....+...+..+......+...+..++.++..++.......
T Consensus 776 s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~- 854 (1293)
T KOG0996|consen 776 SKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKV- 854 (1293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Confidence 111222233222233333333333333333333333333332222222222222222222222222222211000
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHH------HH----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 710 PPSASAVDEISQEISNIQEEIQEKE------II----------------------LEKLQFSMNEAEAKVEDLKLSFQSL 761 (1034)
Q Consensus 710 ~~~~~~~~~l~~~~~~l~~~~~~l~------~~----------------------~~~l~~~~~~~~~~~~~~~~~~~~~ 761 (1034)
.....+..++..+..+..+++.+. .+ +..+..++..+...+..+...+...
T Consensus 855 -~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s 933 (1293)
T KOG0996|consen 855 -VDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTS 933 (1293)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 000111111111222222111110 11 1111111111111111111111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHhHHHHHHHHHH--------------
Q 001670 762 CESAKEEVDTFEAAEKELMEIEKNLQ--------------TSESEKAHYEDVMRTRVVGAIKEAES-------------- 813 (1034)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 813 (1034)
...+..+...+..++..+...+.++. ++..++.+....+ .++...+..+..
T Consensus 934 ~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~-~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 934 DRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESL-KEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111222222222222211111 1111111111111 111111111111
Q ss_pred -------HHHHHHHHHHHHHHHHH-------h--hCChhhhhhcCCCCCCCHHHHHHH---------HHHHHHHHHHHH-
Q 001670 814 -------QYRELELLRQDSCRKAS-------V--ICPESEIEALGGWDGSTPEQLSAQ---------VNRLNQRLKHES- 867 (1034)
Q Consensus 814 -------~~~~l~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~l~~~---------l~~l~~~l~~~~- 867 (1034)
.+......+.+...+.. . +|.-.+.......+....++++.. +..++.++..+.
T Consensus 1013 ~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~ 1092 (1293)
T KOG0996|consen 1013 ERIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELRE 1092 (1293)
T ss_pred hhccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcC
Confidence 11111111111111100 0 000000000011112233333333 344455555431
Q ss_pred HH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEE
Q 001670 868 HQ--YSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKIN 945 (1034)
Q Consensus 868 ~~--~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~i~~~~~~~F~~~~~~~g~~g~~~ 945 (1034)
.. ....|......|......+......+.+.++.+..|. ..++..|+..|.-|...+...|.-+. +|++++|.
T Consensus 1093 vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lr---k~RldEFm~gf~~Is~kLkemYQmIT--~GGdAeLE 1167 (1293)
T KOG0996|consen 1093 VDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELR---KRRLDEFMAGFNIISMKLKEMYQMIT--LGGDAELE 1167 (1293)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcceeE
Confidence 11 1223444444454444555555555555555554444 35678899999999999998888765 48888888
Q ss_pred eeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 946 INYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 946 ~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
+-+..+|++-+|.|...||-+.|.+|..||||||++++|||+|||+.|.|+||||||||||+| -|..++-.++-+
T Consensus 1168 lVDslDPFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkE--- 1244 (1293)
T KOG0996|consen 1168 LVDSLDPFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKE--- 1244 (1293)
T ss_pred eeccCCCcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHH---
Confidence 754555555444444456889999999999999999999999999999999999999999999 888888888876
Q ss_pred CCCCceEEEe
Q 001670 1024 YVPCNFFYLV 1033 (1034)
Q Consensus 1024 ~~~~~q~~~i 1033 (1034)
+..+.|||||
T Consensus 1245 rTkNAQFIII 1254 (1293)
T KOG0996|consen 1245 RTKNAQFIII 1254 (1293)
T ss_pred hccCCeEEEE
Confidence 4568999998
No 7
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4e-70 Score=583.47 Aligned_cols=962 Identities=16% Similarity=0.218 Sum_probs=542.3
Q ss_pred ceeEeEEEEEecccc-ccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEE
Q 001670 19 AGTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~ 97 (1034)
||.|..|++.||+|| +++.|-|...+|+|+||||||||++||||.||||..++. +|+..+.++|+.-+..+-|++.|.
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~~FTaIIGPNGSGKSNlMDAISFVLGekss~-LR~~~lkdLIyg~~i~~~v~l~Y~ 79 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSH-LRVSHLKDLIYGKPIRKPVTLKYE 79 (1141)
T ss_pred CCceeeeehhccccccCceeecCchhceeeeCCCCCchHHHHHHHHHHhcCCCcc-cccchHHHHhcCCccCCchhheee
Confidence 589999999999999 556664444899999999999999999999999999876 799999999995555566776666
Q ss_pred ecCCCCCCcccCCCeEEEEEEeecCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhhhcCCchh
Q 001670 98 NRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKD 177 (1034)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l~~~~~~~ 177 (1034)
-++ |....++|.|.+|+++|.| +|..|+ ..++..-+...||-+....|.+-||.+..+. ...|.+
T Consensus 80 ~~d---------g~~~~F~R~I~~G~seY~I---Dne~VT--~eeY~~eLekinIlVkARNFLVFQGdVE~IA-~k~PkE 144 (1141)
T KOG0018|consen 80 EGD---------GETRRFTRAINGGTSEYMI---DNEIVT--REEYLEELEKINILVKARNFLVFQGDVEKIA-GKNPKE 144 (1141)
T ss_pred cCC---------chhhhhhhhhcCCceeEEE---cceecc--HHHHHHHHhhcceeeeeeeEEEecChHHHHh-ccCHHH
Confidence 442 3567889988899999999 677774 4789999999999998888999999999855 457888
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Q 001670 178 KFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYD 257 (1034)
Q Consensus 178 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1034)
+-.+|...++-..+...+...+..+..+.......-...+.+..+....+......+.+..+..+....+......++..
T Consensus 145 lt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfh 224 (1141)
T KOG0018|consen 145 LTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFH 224 (1141)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888877777777777777777777777788888888888777776666666
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
Q 001670 258 VDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRR-------------RKDELQQS 324 (1034)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------~~~~~~~~ 324 (1034)
.+..+..+..++..+.+.+..+....+....++.....+......++..+...+..... ........
T Consensus 225 vE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~r 304 (1141)
T KOG0018|consen 225 VEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKR 304 (1141)
T ss_pred hhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhH
Confidence 77777777777766666666665555554444444333333333322222222222211 11222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------------hHHHH
Q 001670 325 ISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNT----------------------------QAEES 376 (1034)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------------------~~~~~ 376 (1034)
+......+...+.........+..+..++..+.........++.... ..++.
T Consensus 305 l~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~ 384 (1141)
T KOG0018|consen 305 LEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELE 384 (1141)
T ss_pred HHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHH
Confidence 33333344444444444444444444333333333222222211110 00111
Q ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHH
Q 001670 377 EIEAKL--------------KELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDY-------DKKCREIR 435 (1034)
Q Consensus 377 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-------~~~~~~l~ 435 (1034)
.++... .++++.+..+...+..+......+...+.........+...+..+ ..+...+.
T Consensus 385 ~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n 464 (1141)
T KOG0018|consen 385 VLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELN 464 (1141)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHH
Confidence 111111 111111111111111111111111111111111111111111111 11111112
Q ss_pred HHHHHHHHhcCCccc-cCCcccHHHHHHHHHhhccCCCCCCccccccceeccCCCChHHHHHHHHhccccceeecchhhH
Q 001670 436 SEIRELQQHQTNKVT-AFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDA 514 (1034)
Q Consensus 436 ~~l~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~i~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~ 514 (1034)
.++.....+...... ...+.........+...++ +.++|+|.+.+++.+.. ..|..|+..++|....++||++...+
T Consensus 465 ~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr-~fPgv~GrviDLc~pt~-kkyeiAvt~~Lgk~~daIiVdte~ta 542 (1141)
T KOG0018|consen 465 EELVEVLDQLLDASADRHEGSRRSRKQEAVEALKR-LFPGVYGRVIDLCQPTQ-KKYEIAVTVVLGKNMDAIIVDTEATA 542 (1141)
T ss_pred HHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHH-hCCCccchhhhcccccH-HHHHHHHHHHHhcccceEEeccHHHH
Confidence 222221111111000 0000111122223333333 33556788888877765 78999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccEEEeecCCCCCCCCCCCCC-CCCCCccccceecCcHHHHHHhhccCCccEEEEeCChHHHHHHh
Q 001670 515 LLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLP-HTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVA 593 (1034)
Q Consensus 515 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 593 (1034)
..|..+++...+++.+|+|++.....+ ....++ +.++.-++++|.+++..-..+. +.+|++++|++...|+.++
T Consensus 543 ~~CI~ylKeqr~~~~TFlPld~i~v~~--~~e~lr~~~g~rlv~Dvi~ye~e~eka~~---~a~gn~Lvcds~e~Ar~l~ 617 (1141)
T KOG0018|consen 543 RDCIQYLKEQRLEPMTFLPLDSIRVKP--VNEKLRELGGVRLVIDVINYEPEYEKAVQ---FACGNALVCDSVEDARDLA 617 (1141)
T ss_pred HHHHHHHHHhccCCccccchhhhhcCc--ccccccCcCCeEEEEEecCCCHHHHHHHH---HHhccceecCCHHHHHHhh
Confidence 999999999998999999988643221 111122 2446667788888764322222 3357899999999999999
Q ss_pred hhcCCCCcceEEccCCCeeeecCCcccccccccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 001670 594 FEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRK---RKRDSEERLQ 670 (1034)
Q Consensus 594 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~l~~---~~~~l~~~~~ 670 (1034)
+.+..+ ..+++++|.++..+|.++++..... |. +..++.|......+..++..+.. +....+..+.
T Consensus 618 y~~~~r--~k~valdGtl~~ksGlmsGG~s~~~-wd--------ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~ 686 (1141)
T KOG0018|consen 618 YGGEIR--FKVVALDGTLIHKSGLMSGGSSGAK-WD--------EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIH 686 (1141)
T ss_pred hccccc--ceEEEeeeeEEeccceecCCccCCC-cC--------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 877543 3889999999998887776665533 43 12223333222222222222222 1222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001670 671 DLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSM------ 744 (1034)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~------ 744 (1034)
.++..+.-+...+..+...+...+.++...+..+.. ....+..+...+...+..+..++.....++..+
T Consensus 687 ~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~-----~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~ 761 (1141)
T KOG0018|consen 687 GLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDE-----FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCR 761 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333322222322222222222333322222222 222222222222222222222222222221111
Q ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001670 745 ------------------------------------------------NEAEAKVEDLKLSFQSLCESAKEEVDTFEAA- 775 (1034)
Q Consensus 745 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 775 (1034)
...+..+.++..++..+...-..+...+...
T Consensus 762 ~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~ 841 (1141)
T KOG0018|consen 762 RIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIE 841 (1141)
T ss_pred hcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHH
Confidence 1111111111111111111000000000000
Q ss_pred ------HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh-----hhhhh----
Q 001670 776 ------EKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPE-----SEIEA---- 840 (1034)
Q Consensus 776 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~---- 840 (1034)
.......+.++.+.......+...+ ..+...+..++..++....+...+...+...+-. ..+.+
T Consensus 842 ~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~-tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ 920 (1141)
T KOG0018|consen 842 ELEKKNKSKFEKKEDEINEVKKILRRLVKEL-TKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIG 920 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCcccccee
Confidence 1111122222222222233333333 3333344444444444444444443333321110 01111
Q ss_pred ----cCCCCCCCHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 841 ----LGGWDGSTPEQLSAQVNRLNQRLKHESHQ--YSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWG 914 (1034)
Q Consensus 841 ----~~~~~~~~~~~l~~~l~~l~~~l~~~~~~--~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~l~~~~~ 914 (1034)
++.. +..+. |+.+++.....+....++ +...++.+. +.++.+.+......-+.....++.+. ++++.
T Consensus 921 ieidy~~L-~~~y~-L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK---~~R~~ 993 (1141)
T KOG0018|consen 921 IEIDYSGL-PREYK-LQQKLEEKQSVLNRIAPNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVK---KKRYE 993 (1141)
T ss_pred cccccccc-cHHHH-HHHHHHHHHHHHHHhCcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 1111 22232 667777777766665332 222333333 44444444444444444444443333 45667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceeEEeeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhhhhc
Q 001670 915 KFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMT 994 (1034)
Q Consensus 915 ~~~~~~~~i~~~~~~~F~~~~~~~g~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~~~~ 994 (1034)
.|+.+|..|+..+..++..+... .+++.|.++.++.|+--+|++++-|||+.+++|.+||||||++.|||||||++++.
T Consensus 994 ~F~~~F~~va~~Id~IYK~Ltnt-~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALLFaihsy~ 1072 (1141)
T KOG0018|consen 994 RFMACFEHVADNIDRIYKELTNT-EGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALLFAIHSYK 1072 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-ccceeecCCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHHHHhccCC
Confidence 89999999999999999998833 35567888888889888999999999999999999999999999999999999999
Q ss_pred CCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 995 EAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 995 ~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|+||+|||||||+| +|.-....++. .++.|||||
T Consensus 1073 PaPFfvlDEiDAALDntNi~kvasyIr-----~~~~Q~IvI 1108 (1141)
T KOG0018|consen 1073 PAPFFVLDEIDAALDNTNIGKVASYIR-----SSNFQFIVI 1108 (1141)
T ss_pred CCCceehhhHHHHhhhccHHHHHHHHh-----cCCceEEEE
Confidence 99999999999999 67666666675 467899998
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=2.2e-68 Score=672.04 Aligned_cols=968 Identities=19% Similarity=0.251 Sum_probs=501.2
Q ss_pred eEeEEEEEeccccc-cceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhc-----CCceEEEEE
Q 001670 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVEV 94 (1034)
Q Consensus 21 ~i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~-----g~~~a~v~l 94 (1034)
+|++|.|.||+||. .++|+|+||+|+|+||||||||||+|||+||||+.+....|+.++.++|+. +...|.|.+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~ 80 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV 80 (1164)
T ss_pred CeeEEEEeCeeeECCeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence 58999999999996 589999999999999999999999999999999988777888889999988 446799999
Q ss_pred EEEecCCCCCCcccCCCeEEEEEEee---cCc-ceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhh
Q 001670 95 ELKNRGEDAFKPEIFGDSIIIERRIT---EST-STTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (1034)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~---~~~-~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l 170 (1034)
+|.++++. + | +.+.|.|++. +|. +.|++ ||.+++ ..++..++..+|++++++ .++.||.+..|+
T Consensus 81 ~f~~~~~~-~-~----~~~~i~r~~~~~~~~~~~~~~~---n~~~~~--~~~~~~~l~~~~~~~~~~-~~~~qg~~~~~~ 148 (1164)
T TIGR02169 81 TFKNDDGK-F-P----DELEVVRRLKVTDDGKYSYYYL---NGQRVR--LSEIHDFLAAAGIYPEGY-NVVLQGDVTDFI 148 (1164)
T ss_pred EEEcCCCC-C-C----CcEEEEEEEEEcCCCCcceEEE---CCcccc--HHHHHHHHHHcCCCcCcc-eEEecchHHHHH
Confidence 99886532 1 1 4578888765 444 67888 566664 578999999999998875 467799999998
Q ss_pred hcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 171 HSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKL 250 (1034)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1034)
.. .|..+..++....++..+...+..+..++..+.+.+.++...+..+..+++.++...+...++..+...+.......
T Consensus 149 ~~-~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~ 227 (1164)
T TIGR02169 149 SM-SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE 227 (1164)
T ss_pred CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 66788888888888999999999999999999999999999999999999998888887777777666655554444
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHH
Q 001670 251 AWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKA----------------------EIAVMV 308 (1034)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~l~~~~ 308 (1034)
.+..+..+...+..+..++..+...+..+...+..+...+..+...+..+.. .+..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (1164)
T TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE 307 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 4433333333333333333333333333332222222222222222222111 111111
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH------
Q 001670 309 EKTSEVRRRKD-------ELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQ-------VHDIQEQHV------ 368 (1034)
Q Consensus 309 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~------ 368 (1034)
..+..+...+. .+..++..+..++..+...+......+..+...+..+... +..+.....
T Consensus 308 ~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 387 (1164)
T TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 1111111111111111111111111111111111111111 111111000
Q ss_pred HhhhHHH-------HHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHhHHHHHH
Q 001670 369 RNTQAEE-------SEIEAKLKELQCEID-------AANITLSRMKEEDSALSEKL-------SKEKNEIRRISDEIEDY 427 (1034)
Q Consensus 369 ~~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~l~~~~~~~ 427 (1034)
......+ ..+...+..+..++. .+...+..+..++..+...+ ..+...+..+...+..+
T Consensus 388 ~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 467 (1164)
T TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011 111111111111111 11111111111111111111 11111111111111111
Q ss_pred HHH-------HHHHHHH-------HHHHHHhcCCccccCCcccHHHHHHHHHhhccCCCCCCccccccceeccCCCChHH
Q 001670 428 DKK-------CREIRSE-------IRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAP 493 (1034)
Q Consensus 428 ~~~-------~~~l~~~-------l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ 493 (1034)
..+ +..+..+ +..+...... ...+. .....+..+. ... ..+++|++++++.++ +.|..
T Consensus 468 ~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~-~~~~~--~~~~~i~~~~--~~~-~~g~~g~l~dli~v~--~~y~~ 539 (1164)
T TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARA-SEERV--RGGRAVEEVL--KAS-IQGVHGTVAQLGSVG--ERYAT 539 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccc--cchHHHHHHH--hcC-CCCceecHHHhcCcC--HHHHH
Confidence 111 1111111 1111111000 00000 0001111111 111 235678889999884 79999
Q ss_pred HHHHHHhccccceeecchhhHHHHHHHHHHhCCCCccEEEeecCCCCCCCCCCCCCCCCCCccccceecCcHHHHHHhhc
Q 001670 494 AVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVD 573 (1034)
Q Consensus 494 aie~~l~~~l~~~vv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 573 (1034)
|++.++|+.+.++||++..++..+..+++....++.+|+|++...+.........+++...++++.+.+++. +..++.
T Consensus 540 Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~- 617 (1164)
T TIGR02169 540 AIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPK-YEPAFK- 617 (1164)
T ss_pred HHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcccccCCCchHHHHHHccCcHH-HHHHHH-
Confidence 999999999999999999999999999998888999999986443210000111111223345566766532 222221
Q ss_pred cCCccEEEEeCChHHHHHHhhhcCCCCcceEEccCCCeeeecCCcccccccccc-cCCcc----ccCCHHHHHHHHHHHH
Q 001670 574 MGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRR-LRTGR----LCGSYDEKIKDLERAA 648 (1034)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~i~~l~~~l 648 (1034)
..++.+++|++++.|..+.. ..++||++|+++.++|.++++...... ..... ....+..++..+..++
T Consensus 618 -~~lg~~~v~~~l~~a~~~~~------~~~~vTldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l 690 (1164)
T TIGR02169 618 -YVFGDTLVVEDIEAARRLMG------KYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL 690 (1164)
T ss_pred -HHCCCeEEEcCHHHHHHHhc------CCcEEEeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 12456889999999988763 127899999999988877666421110 00000 0112223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhhhccCC--CCC
Q 001670 649 LHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKR--------------RCFSAERNRMSKELAFQDVKNSFAADAG--PPS 712 (1034)
Q Consensus 649 ~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~ 712 (1034)
..+...+..+...+..+...+..+...+..+.. .+..+...+..+...+..+...+..... ..+
T Consensus 691 ~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l 770 (1164)
T TIGR02169 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333332222222222222211111 1111111111111111111111111000 000
Q ss_pred CcchhHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 001670 713 ASAVDEISQ-------------------EISNIQEEIQEKEIILEKLQFSMNEAEAKVED-------LKLSFQSLCESAK 766 (1034)
Q Consensus 713 ~~~~~~l~~-------------------~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 766 (1034)
...+..+.. .+..+..++..+...+..+...+..+...+.. +...+..+...+.
T Consensus 771 ~~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~ 850 (1164)
T TIGR02169 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111 11111222222222222222222111111111 1111111111111
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHH-------HHH
Q 001670 767 EEVDTFEA-------AEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQ-------YRELELLR-------QDS 825 (1034)
Q Consensus 767 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~-------~~~ 825 (1034)
.+...+.. +...+..+...+..+...+..+...+ ..+...+..+... +..+...+ ..+
T Consensus 851 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 929 (1164)
T TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER-DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11111112222222222222222211 1111112222222 22221111 111
Q ss_pred HHHHHhhCChh-hhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 826 CRKASVICPES-EIEALGGWDGSTPEQLSAQVNRLNQRLKHESH---QYSESIEDLRMLYEEKEHKILRKQQTYQAFREK 901 (1034)
Q Consensus 826 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~---~~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~~ 901 (1034)
..+........ ....... ....+..+..++..+..++..+.+ .+...|+.+..+|..+..++.++......+...
T Consensus 930 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~ 1008 (1164)
T TIGR02169 930 EEELSEIEDPKGEDEEIPE-EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008 (1164)
T ss_pred HHHHHHhhhhhhhhhhccc-ccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111100 0000000 023567888888888888876533 223566677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEEeeccC----ceeEEEEecCCCCCCCcccCCCCCCcc
Q 001670 902 VRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEE----KTLSIEVKMPQDASSSNVRDTRGLSGG 977 (1034)
Q Consensus 902 i~~l~~~l~~~~~~~~~~~~~i~~~~~~~F~~~~~~~g~~g~~~~~~~~----~~l~i~v~~~~~~~~~~~~~~~~lSGG 977 (1034)
|..|+. .+...|..+|..|...|..+|..+| |+.|.|.+++++ .++.|.|.| ||+...++..||||
T Consensus 1009 i~~l~~---~~~~~f~~~f~~~~~~f~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lSgg 1078 (1164)
T TIGR02169 1009 IEEYEK---KKREVFMEAFEAINENFNEIFAELS---GGTGELILENPDDPFAGGLELSAKP----KGKPVQRLEAMSGG 1078 (1164)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh---CCeEEEEecCCCCcccCCeEEEEEc----CCCCCCcchhcCcc
Confidence 766663 3455788999999999999999988 788998886543 456677764 56667788999999
Q ss_pred cchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 978 ERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 978 Eks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|+++++||++||+|.+.|+|||||||||+|| +|+.....+|..++. ..|||||
T Consensus 1079 e~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~---~~~~i~~ 1133 (1164)
T TIGR02169 1079 EKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG---EAQFIVV 1133 (1164)
T ss_pred hHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC---CCeEEEE
Confidence 9999999999999999999999999999999 888888888877643 4789987
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=1.4e-58 Score=586.58 Aligned_cols=982 Identities=16% Similarity=0.252 Sum_probs=496.5
Q ss_pred eEeEEEEEeccccc-cceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCC------ceEEEE
Q 001670 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYAMVE 93 (1034)
Q Consensus 21 ~i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~------~~a~v~ 93 (1034)
+|.+|.|.||+||. .++|+|+||+|+|+||||||||||++||+||||+.++...|+.++.++|+.|+ ..++|+
T Consensus 1 ~i~~l~~~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~ 80 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE 80 (1179)
T ss_pred CeeEEEEeCccccCCCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence 48999999999995 57999999999999999999999999999999998877889999999999987 368999
Q ss_pred EEEEecCCCCCCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhhhc
Q 001670 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (1034)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l~~ 172 (1034)
++|.+.++ +.|.+....++|.|.+. +|.+.|+++ |.++ +..++..++..+||+.++ ++|++||.+..|+..
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~i~r~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~i~~~~-~~~~~q~~~~~~~~~ 152 (1179)
T TIGR02168 81 LVFDNSDG--LLPGADYSEISITRRLYRDGESEYFIN---GQPC--RLKDIQDLFLDTGLGKRS-YSIIEQGKISEIIEA 152 (1179)
T ss_pred EEEecCCC--CCCCCCCCeEEEEEEEeeCCCceeeEC---CCcc--cHHHHHHHHhccCCCccc-chheecccHHHHHcC
Confidence 99987532 22321225799999998 688899994 5555 456799999999999876 478999999999976
Q ss_pred CCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001670 173 GNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAW 252 (1034)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1034)
+|..++.++..+.++..+...+..+..++.++.+.+.++..++..+..+.+.++.......++..+...+........+
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (1179)
T TIGR02168 153 -KPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLV 231 (1179)
T ss_pred -CHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999998888877777777666666555555444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Q 001670 253 SWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVR--------------RRK 318 (1034)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~ 318 (1034)
..+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+. ..+
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~ 311 (1179)
T TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444444444444444444333333333333333333332222222222222222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH------HhhhHHHHHHHHHHHHH
Q 001670 319 DELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKG-------LEQQVHDIQEQHV------RNTQAEESEIEAKLKEL 385 (1034)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 385 (1034)
..+...+..+..++..+...+......+..+...+.. ....+........ .........+..++..+
T Consensus 312 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (1179)
T TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222222222222222222222 2222221111110 00111122222222222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHH-------HHHhcC
Q 001670 386 QCEIDAANITLSRMKEEDSALSEK-------LSKEKNEI-----RRISDEIEDYDKKCREIRSEIRE-------LQQHQT 446 (1034)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~-----~~l~~~~~~~~~~~~~l~~~l~~-------l~~~~~ 446 (1034)
..++..+...+..+...+..+... +..+..++ ..+...+..+...+..+...+.. +.....
T Consensus 392 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 471 (1179)
T TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333333332 33322221 11122222222222222111111 110000
Q ss_pred ----------CccccCCc------------ccHH-HHHHHHHhhccCCCCCCccccccceeccCCCChHHHHHHHHhccc
Q 001670 447 ----------NKVTAFGG------------DRVI-SLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLL 503 (1034)
Q Consensus 447 ----------~~~~~~~~------------~~~~-~~~~~i~~~~~~~~~~~~g~~~~~i~~~~~~~~~~aie~~l~~~l 503 (1034)
.....+.. .++. .+.+.+.. ...+ .+++|.+.+++.+ + +.|..++...+|+.+
T Consensus 472 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v-~~~~-~~~~g~~~~li~~-~-~~~~~a~~~~~g~~~ 547 (1179)
T TIGR02168 472 EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGL-SGILGVLSELISV-D-EGYEAAIEAALGGRL 547 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhc-cccc-CCCccchhceeee-C-hhHHHHHHHHHHHHh
Confidence 00000000 0000 01111111 1111 2357777777776 4 789999999999887
Q ss_pred cceeecchhhHHHHHHHHHHhCCCCccEEEeecCCCCC-CCCC-CCCCC--CCCCccccceecCcHHHHHHhhccCCccE
Q 001670 504 NAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRL-SLPH-HMLPH--TKHPTTLSVLQSDNPTVINVLVDMGSAER 579 (1034)
Q Consensus 504 ~~~vv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 579 (1034)
..+||++...+..+...++....++.++++++...... ..+. ...+. +....+.+...++ +.+..++. ...+.
T Consensus 548 ~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~~~~~--~~~~~ 624 (1179)
T TIGR02168 548 QAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD-PKLRKALS--YLLGG 624 (1179)
T ss_pred cCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhccc-HhHHHHHH--HHhCC
Confidence 77899888777666666665455666666654332110 0000 00000 1111122222222 22222110 01223
Q ss_pred EEEeCChHHHHHHhhhcCCCCcceEEccCCCeeeecCCcccccccccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 580 QVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCR 659 (1034)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~l~~l~ 659 (1034)
+.+|.+++.+......... .+.+++++|..+..+|...++... . ......+..++..++..+..+...+..+.
T Consensus 625 ~~ivt~l~~a~~~~~~~~~--~g~~v~~~G~~~~~gg~~~~~~~~----~-~~~~~~l~~e~~~l~~~~~~l~~~l~~~~ 697 (1179)
T TIGR02168 625 VLVVDDLDNALELAKKLRP--GYRIVTLDGDLVRPGGVITGGSAK----T-NSSILERRREIEELEEKIEELEEKIAELE 697 (1179)
T ss_pred ceEeCCHHHHHHHHHHcCC--CceEEecCCEEEcCCceEecCccc----c-ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766543222 237788887654333332111110 0 01112344445555555544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhccCC--CCCCcchhHHHHHHHHHHHHH
Q 001670 660 KRKRDSEERLQDLQQHQQNVKRR-------CFSAERNRMSKELAFQDVKNSFAADAG--PPSASAVDEISQEISNIQEEI 730 (1034)
Q Consensus 660 ~~~~~l~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~ 730 (1034)
..+..+...+..+...+..+... +..+...+..+...+..+..++..... ..+...+..+..++..+...+
T Consensus 698 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 777 (1179)
T TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333322222 222222222222222222222111000 001111112222222222211
Q ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHH------
Q 001670 731 QEKEI-------ILEKLQFSMNEAEAKVEDLKLSFQSLCESA-------KEEVDTFEAAEKELMEIEKNLQTSE------ 790 (1034)
Q Consensus 731 ~~l~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------ 790 (1034)
..+.. .+..+...+..+...+..+...+..+...+ ..+...+..+..++..+...+..+.
T Consensus 778 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 857 (1179)
T TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 112222222222222222222222222222 2222222222222222222222222
Q ss_pred -HHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHH---------------------HHHHhh-------CC
Q 001670 791 -SEKAHYEDVMRTRVVGAIKEAESQYR-------ELELLRQDSC---------------------RKASVI-------CP 834 (1034)
Q Consensus 791 -~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~---------------------~~~~~~-------~~ 834 (1034)
..+..+...+ ..+...+..+...+. .+...+..+. .+.... ..
T Consensus 858 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~ 936 (1179)
T TIGR02168 858 AAEIEELEELI-EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936 (1179)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222221 111111111111111 1111111100 000000 00
Q ss_pred -----hhhhh--------hcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 835 -----ESEIE--------ALGGW---DGSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAF 898 (1034)
Q Consensus 835 -----~~~~~--------~~~~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~l 898 (1034)
..... ..... ....+..+..++..+...+.. +.........+|..+..++.++...+..+
T Consensus 937 ~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lg~aiee----~~~~~~~a~er~~~l~~q~~dL~~~~~~L 1012 (1179)
T TIGR02168 937 RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE----LGPVNLAAIEEYEELKERYDFLTAQKEDL 1012 (1179)
T ss_pred HHHHHHHHHHHHhccCHHHHHhhccccccCHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000 012334444444444443332 22212223488999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCceeEEeeccCceeEEEEecCCCCCCCcccCCCCCCc
Q 001670 899 REKVRACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKK--GISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSG 976 (1034)
Q Consensus 899 ~~~i~~l~~~l~~~~~~~~~~~~~i~~~~~~~F~~~~~~~--g~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSG 976 (1034)
...|..+...+..++..-..+|..++..|...|..+|..+ |+.+.+.++.+++++...|.++..||++....+..|||
T Consensus 1013 ~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~ 1092 (1179)
T TIGR02168 1013 TEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAGIEIFAQPPGKKNQNLSLLSG 1092 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccCceEEEeCCCCccccccccCc
Confidence 9999999988888764447778888888888888888765 55556666533333333333333345666677889999
Q ss_pred ccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 977 GERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 977 GEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
||+.+++||++||++.+.|+||+||||+|++| .++.....+|...+. ..|||||
T Consensus 1093 g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~---~~~~i~~ 1148 (1179)
T TIGR02168 1093 GEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK---NTQFIVI 1148 (1179)
T ss_pred cHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc---CCEEEEE
Confidence 99999999999999999999999999999999 667766777766542 3678876
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=4.8e-43 Score=421.27 Aligned_cols=157 Identities=27% Similarity=0.399 Sum_probs=119.8
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEec
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|.|.||++|.++.|+|+||+|+|+||||||||||++||+|||||.++. +..+.++|+.|...+.|+++|.++
T Consensus 1 M~i~~l~l~nf~~~~~~~~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~---~~~~~~~~~~~~~~~~v~~~f~~~ 77 (880)
T PRK02224 1 MRFDRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL---DDTLDDVITIGAEEAEIELWFEHA 77 (880)
T ss_pred CeEEEEEEECcccccceEEecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc---cccHHHHHhCCCCcEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999999987753 235678899999999999999976
Q ss_pred CCCCCCcccCCCeEEEEEEee-cCc----ceEEEecCCCCcccccHHHHHHH-HhhcCCC--cCCCeeeecchhhHHhhh
Q 001670 100 GEDAFKPEIFGDSIIIERRIT-EST----STTVLKDHQGKRVASRKQELLEL-IDHFNID--VENPCVIMSQDKSREFLH 171 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~----~~~~i~~~~g~~~~~~~~~~~~~-~~~~~i~--~~~~~~~~~q~~~~~~l~ 171 (1034)
| ..|.|.|.+. .|. ..|++.++++ ......++... ..-+|++ .+..+++++||.+..|+.
T Consensus 78 ~----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~ 145 (880)
T PRK02224 78 G----------GEYHIERRVRLSGDRATTAKCVLETPEG--TIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLIN 145 (880)
T ss_pred C----------EEEEEEEEEecCCCCcccceeEEeCCCc--cccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHc
Confidence 3 4689999986 332 3455443222 22233344443 3334654 334578899999999997
Q ss_pred cCCchhhHHHHHhhhhHHHHH
Q 001670 172 SGNDKDKFKFFFKATLLQQVN 192 (1034)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~ 192 (1034)
. +|.++..++.....+..+.
T Consensus 146 ~-~p~~R~~ii~~l~~l~~~e 165 (880)
T PRK02224 146 A-TPSDRQDMIDDLLQLGKLE 165 (880)
T ss_pred C-CHHHHHHHHHHHhCCHHHH
Confidence 6 7778888888877764443
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=7.6e-39 Score=386.83 Aligned_cols=183 Identities=21% Similarity=0.300 Sum_probs=133.0
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEec
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|.|.||+||.+.+|+|+||+|+|+||||||||||++||.|||||..+...|+....++++.|...+.|.++|..+
T Consensus 1 m~i~~l~i~nf~~~~~~~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~ 80 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGSGTEIELKFEKN 80 (880)
T ss_pred CeeEEEEEeCccCccCceEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCCCEEEEEEEEEC
Confidence 89999999999999888999999999999999999999999999999876554455555678999999999999999865
Q ss_pred CCCCCCcccCCCeEEEEEEeecCcceEEEecCCCC-cccccHHHHHHHHhh-cCCCcCCCeeeecchhhHHhhhcCCchh
Q 001670 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGK-RVASRKQELLELIDH-FNIDVENPCVIMSQDKSREFLHSGNDKD 177 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~-~~~~~~~~~~~~~~~-~~i~~~~~~~~~~q~~~~~~l~~~~~~~ 177 (1034)
| ..|+|.|.+..+.+.+.+. +|. .+....+++...+.. ++.+.+...+|++||.+..|+. +|..
T Consensus 81 ~----------~~~~i~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~--~~~~ 146 (880)
T PRK03918 81 G----------RKYRIVRSFNRGESYLKYL--DGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE--SDES 146 (880)
T ss_pred C----------eEEEEEEEEcCCceEEEEC--CCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc--CcHH
Confidence 3 4689999987544444443 232 222334455554433 3444444568899999999985 4577
Q ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001670 178 KFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATI 216 (1034)
Q Consensus 178 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 216 (1034)
+.+.+....++..+......+......+...+..+...+
T Consensus 147 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 147 REKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777766666555555555554444444444333
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=371.25 Aligned_cols=176 Identities=23% Similarity=0.365 Sum_probs=133.1
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEec
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|+|.||++|+..+|+|+||+|+|+||||||||||++||+|||||.++ +....++++.|...++|+++|..+
T Consensus 1 M~i~~l~l~NF~s~~~~~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~----~~~~~~~i~~~~~~~~V~l~f~~~ 76 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKR----TEKIEDMIKKGKNNLEVELEFRIG 76 (895)
T ss_pred CeEEEEEEeCccCCCCceEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc----cccHHHHhhCCCCeEEEEEEEEEC
Confidence 8999999999999999999999999999999999999999999999998753 334588899999999999999875
Q ss_pred CCCCCCcccCCCeEEEEEEee-cCcc---eEEEecCCCCcccccHHHHHHHHh--hcCCCcC--CCeeeecchhhHHhhh
Q 001670 100 GEDAFKPEIFGDSIIIERRIT-ESTS---TTVLKDHQGKRVASRKQELLELID--HFNIDVE--NPCVIMSQDKSREFLH 171 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~---~~~i~~~~g~~~~~~~~~~~~~~~--~~~i~~~--~~~~~~~q~~~~~~l~ 171 (1034)
| ..|+|.|.+. .+.+ ...+. .+|.+++....++...+. -+|++.+ .+.+|++||.+..|+.
T Consensus 77 g----------~~y~i~R~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~ 145 (895)
T PRK01156 77 G----------HVYQIRRSIERRGKGSRREAYIK-KDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLIS 145 (895)
T ss_pred C----------EEEEEEEEEecCCCCCCceEEEe-cCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHh
Confidence 3 4689999986 3321 22222 157666655567777664 4565533 4467899999999886
Q ss_pred cCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLE 211 (1034)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 211 (1034)
. +|..+...+....++..+...+..+...+..+...+..
T Consensus 146 ~-~~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~ 184 (895)
T PRK01156 146 G-DPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISN 184 (895)
T ss_pred C-CHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 56788888888877776666555555555544444333
No 13
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=6e-35 Score=346.33 Aligned_cols=186 Identities=27% Similarity=0.398 Sum_probs=138.4
Q ss_pred eeEeEEEEEeccccccceeE--cCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEE
Q 001670 20 GTITRVRLENFMCHSSLQIE--LGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~--f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~ 97 (1034)
|+|.+|.|.||+||.+.+|. |++|+|+|+||||||||||+|||+|||||..+... +.+..++++.|+..+.|+++|.
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~~~~V~l~F~ 79 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEKSASVELEFE 79 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCccEEEEEEEE
Confidence 89999999999999988888 99999999999999999999999999999887543 5567889999999999999999
Q ss_pred ecCCCCCCcccCCCeEEEEEEee-cCc---ceEEEecCCCCcccccHHHHHHHHh-hcCCC--cCCCeeeecchhhHHhh
Q 001670 98 NRGEDAFKPEIFGDSIIIERRIT-EST---STTVLKDHQGKRVASRKQELLELID-HFNID--VENPCVIMSQDKSREFL 170 (1034)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~-~~~---~~~~i~~~~g~~~~~~~~~~~~~~~-~~~i~--~~~~~~~~~q~~~~~~l 170 (1034)
+.| ..|.|.|.+. .++ ....+...+|..+.....++...+. .+|++ .+-.++|+|||.+..|+
T Consensus 80 ~~g----------~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl 149 (908)
T COG0419 80 VNG----------KKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFL 149 (908)
T ss_pred ECC----------EEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHH
Confidence 764 5689999987 222 1222333456666655557776444 44665 33458999999999999
Q ss_pred hcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001670 171 HSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK 217 (1034)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 217 (1034)
.. ++.++-..+.....+..+......+..........+..+...+.
T Consensus 150 ~~-~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 150 KS-KPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hc-CcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 55667677776666665555555555555555555555444444
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=2.5e-32 Score=324.80 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=68.8
Q ss_pred EEeeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHH---hhhhcCCCeeEeehhhh---hh--hhH--HH
Q 001670 944 ININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALA---LHEMTEAPFRAMDEFDV---FM--VSF--YI 1013 (1034)
Q Consensus 944 ~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~a---l~~~~~~Pf~vlDEiD~---~~--~~~--~~ 1013 (1034)
-.+||-.| +.+.|....+..+-...++..||||||+++++++++| .|..+.+||++.|++|+ || +|| ..
T Consensus 1337 ~~lDyR~~-~~f~~~~~~g~~~~~~~~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea~r~D~~ 1415 (1486)
T PRK04863 1337 ELLDYRNY-LELEVEVNRGADGWLRAESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAK 1415 (1486)
T ss_pred cccccccc-eEEEEEEecCCcceeecCCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHhhcCCHH
Confidence 34677665 4555554323333334557889999999999999998 88888999999999999 99 888 88
Q ss_pred HHHHHHHhhcCCCCceEEEeC
Q 001670 1014 NYVFSIDFSGYVPCNFFYLVW 1034 (1034)
Q Consensus 1014 ~~~~l~~~~~~~~~~q~~~i~ 1034 (1034)
++.++++.++ .-..||||+.
T Consensus 1416 ~~~~~~~l~~-~~~~q~i~~t 1435 (1486)
T PRK04863 1416 SIATLFELCE-RLDMQLLIAA 1435 (1486)
T ss_pred HHHHHHHHHH-HcCCcEEEec
Confidence 8888998776 5688999874
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-32 Score=335.42 Aligned_cols=172 Identities=16% Similarity=0.223 Sum_probs=114.3
Q ss_pred eEeEEEEEeccccc-----cceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhh------cCCce
Q 001670 21 TITRVRLENFMCHS-----SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK------TGCSY 89 (1034)
Q Consensus 21 ~i~~i~l~nf~~~~-----~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~------~g~~~ 89 (1034)
+|.+|.|.||+||+ .++|+|++|+++|+||||||||||++||+|||||..+...+|. .+|+ .+...
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~~ 78 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDVR 78 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhhh
Confidence 58899999999995 3689999999999999999999999999999988665433443 2332 23356
Q ss_pred EEEEEEEEecCCCCCCcccCCCeEEEEEEee--cCcc----------eEEEecCCCCcc--cccHHHHHH-HHhhcCCC-
Q 001670 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT--ESTS----------TTVLKDHQGKRV--ASRKQELLE-LIDHFNID- 153 (1034)
Q Consensus 90 a~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~--~~~~----------~~~i~~~~g~~~--~~~~~~~~~-~~~~~~i~- 153 (1034)
+.|.++|.+.+ |..|+|.|.+. .+++ ..++ .+|..+ +.+..++.. +...+|++
T Consensus 79 a~V~l~F~~~~---------g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~s~~~~e~~~~i~~~lGv~~ 147 (1311)
T TIGR00606 79 AQIRLQFRDVN---------GEECAVVRSMVCTQKTKKTEFKTLEGVITRY--KHGEKVSLSSKCAEIDREMISHLGVSK 147 (1311)
T ss_pred heeEEEEEcCC---------CCEEEEEeeeeeeeccCcccchhhhhhheec--CCCceeeccccHHHHHHHHHHHhCCCH
Confidence 89999996542 35688999873 1111 1111 245432 334567754 66677877
Q ss_pred -cCCCeeeecchhhHHhhhcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001670 154 -VENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDAL 208 (1034)
Q Consensus 154 -~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 208 (1034)
+++.++|++||.+.+ +.. .|..+.+.|....++..+...++.+..........
T Consensus 148 ~~f~~vi~~~Qge~~~-~~~-~~~~rk~~~d~if~~~~y~k~~~~~~~~~k~~~~~ 201 (1311)
T TIGR00606 148 AVLNNVIFCHQEDSNW-PLS-EGKALKQKFDEIFSATRYIKALETLRQVRQTQGQK 201 (1311)
T ss_pred HHHhhceeeCCccccc-ccC-ChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 556688999999964 433 56667777766665554444444443333333333
No 16
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=2.8e-28 Score=290.97 Aligned_cols=186 Identities=19% Similarity=0.300 Sum_probs=131.3
Q ss_pred eeEeEEEEEecccc-ccceeEcC------CCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccc-cchhhhhhcCCceEE
Q 001670 20 GTITRVRLENFMCH-SSLQIELG------EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRA-ATLKDFIKTGCSYAM 91 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~-~~~~i~f~------~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~-~~~~~~i~~g~~~a~ 91 (1034)
|+|.+|++.||++| +..+|+|. .|+++|+||||||||||+|||+|+|||.++...+. ..+.++++.|...++
T Consensus 1 Mk~~~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~ 80 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECL 80 (1047)
T ss_pred CcceEEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceE
Confidence 89999999999999 56788884 58999999999999999999999999988754443 356888999999999
Q ss_pred EEEEEEecCCCCCCcccCCCeEEEEEEee------cCc---ceEEEec-CCCCcccccHHHHHH-HHhhcCCCcC--CCe
Q 001670 92 VEVELKNRGEDAFKPEIFGDSIIIERRIT------EST---STTVLKD-HQGKRVASRKQELLE-LIDHFNIDVE--NPC 158 (1034)
Q Consensus 92 v~l~~~~~~~~~~~~~~~~~~~~i~R~~~------~~~---~~~~i~~-~~g~~~~~~~~~~~~-~~~~~~i~~~--~~~ 158 (1034)
|+++|..+| ..|.|.|... +|. ..+.+.. .+|..+..+..++.. +...+|++.+ ..+
T Consensus 81 v~~~F~~~~----------~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~ 150 (1047)
T PRK10246 81 AEVEFEVKG----------EAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRS 150 (1047)
T ss_pred EEEEEEECC----------eEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhh
Confidence 999997654 3466665432 221 1222221 245545444456555 3444466644 457
Q ss_pred eeecchhhHHhhhcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001670 159 VIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATI 216 (1034)
Q Consensus 159 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 216 (1034)
++++||.+..|+.. ++.++..++...+++..+......+.+........+..+...+
T Consensus 151 v~l~QG~f~~fl~a-~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 151 MLLSQGQFAAFLNA-KPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred eeeccccHHHHHhC-ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999987 6678888888877766555555555555555555555554444
No 17
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4e-27 Score=284.43 Aligned_cols=187 Identities=20% Similarity=0.271 Sum_probs=134.3
Q ss_pred eeEeEEEEEeccccc-cceeEcCC--CeEEEEcCCCCCHHHHHHHHHHHcCCCcCCccccc-chhhhhhcCCceEEEEEE
Q 001670 20 GTITRVRLENFMCHS-SLQIELGE--WVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA-TLKDFIKTGCSYAMVEVE 95 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~-~~~i~f~~--~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~-~~~~~i~~g~~~a~v~l~ 95 (1034)
|+|.+|+|.||+||. ..+|+|++ |+++|+||||||||||+|||+|||||.++...+.. ...++...|...+.|+++
T Consensus 1 M~~~~L~l~nf~s~~~~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 80 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELE 80 (1042)
T ss_pred CeeeEEEEeCeeccCCCceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEE
Confidence 899999999999995 45899988 99999999999999999999999999876533322 334455566678899999
Q ss_pred EEecCCCCCCcccCCCeEEEEEEee------cCcceEE---E-ecCCCCcccccHHHHHHHH-hhcCCCcCC--Ceeeec
Q 001670 96 LKNRGEDAFKPEIFGDSIIIERRIT------ESTSTTV---L-KDHQGKRVASRKQELLELI-DHFNIDVEN--PCVIMS 162 (1034)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~R~~~------~~~~~~~---i-~~~~g~~~~~~~~~~~~~~-~~~~i~~~~--~~~~~~ 162 (1034)
|..+| ..|.|.|.+. +|...+. + ...+|..+..+..++...+ ..+|++.+. .+++++
T Consensus 81 F~~~g----------~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~ 150 (1042)
T TIGR00618 81 FSLGT----------KIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLP 150 (1042)
T ss_pred EEECC----------EEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeec
Confidence 98654 3456555543 1221221 1 1234555555566777744 456877554 368999
Q ss_pred chhhHHhhhcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001670 163 QDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIK 217 (1034)
Q Consensus 163 q~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 217 (1034)
||.+..|+.. ++.++..++...++++.+......+.+........+..+...+.
T Consensus 151 Qg~~~~fl~a-~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (1042)
T TIGR00618 151 QGEFAQFLKA-KSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQ 204 (1042)
T ss_pred ccchHHHHhC-CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988 67788889988888777766666666666666666666655554
No 18
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.98 E-value=6.9e-23 Score=249.47 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=61.3
Q ss_pred eEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcC-CCcC------CcccccchhhhhhcCC------
Q 001670 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFG-CRAK------GTQRAATLKDFIKTGC------ 87 (1034)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg-~~~~------~~~r~~~~~~~i~~g~------ 87 (1034)
++.++-|.||..|++.+|+|++|.|+|+|||||||||++|||.|+|+ ++.. ...++.++.++++.|.
T Consensus 3 ~~~R~gliN~~~~~~~~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~~~ 82 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQEFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHDER 82 (1353)
T ss_pred eeeeEEEEEeccccceEEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCCCc
Confidence 57899999999999999999999999999999999999999776553 3221 1246667888998765
Q ss_pred -ceEEEEEEEEec
Q 001670 88 -SYAMVEVELKNR 99 (1034)
Q Consensus 88 -~~a~v~l~~~~~ 99 (1034)
++++|++.+.++
T Consensus 83 ~~y~~~e~~~~~~ 95 (1353)
T TIGR02680 83 VGYLWLEFGRVED 95 (1353)
T ss_pred ceeEEEEeeccCC
Confidence 345555555543
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.96 E-value=1.1e-25 Score=257.81 Aligned_cols=198 Identities=15% Similarity=0.244 Sum_probs=136.4
Q ss_pred ceeEeEEEEEecccccc--ceeEcC-CCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhh-cCCceEEEEE
Q 001670 19 AGTITRVRLENFMCHSS--LQIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK-TGCSYAMVEV 94 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~~~--~~i~f~-~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~-~g~~~a~v~l 94 (1034)
||+|++|++.||+||++ ++|+|+ +|+|+|+||||||||||++||+|||||.+.... ....++. .+...+.|++
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~~---~~~~~~~~~~~~~~~v~l 77 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDI---KKGQLINSINKKDLLVEL 77 (562)
T ss_pred CceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCcC---CHHHhhccCCCCcEEEEE
Confidence 79999999999999965 488998 499999999999999999999999998775422 2244554 3456789999
Q ss_pred EEEecCCCCCCcccCCCeEEEEEEeecCcceEEEecCCCCccc--ccHHHHHHHHhh-cCCCcCCC--eeeecchhhHHh
Q 001670 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVA--SRKQELLELIDH-FNIDVENP--CVIMSQDKSREF 169 (1034)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~~~~--~~~~~~~~~~~~-~~i~~~~~--~~~~~q~~~~~~ 169 (1034)
+|..+| ..|+|.|.+..+...+++ +|.+++ ....++...+.. +|++...+ .++++|+.+..|
T Consensus 78 ~f~~~~----------~~y~i~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f 144 (562)
T PHA02562 78 WFEYGE----------KEYYIKRGIKPNVFEIYC---NGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPF 144 (562)
T ss_pred EEEECC----------EEEEEEEeccCCeEEEec---CCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhH
Confidence 998753 468999987644333333 455432 234567765555 45554332 567999999999
Q ss_pred hhcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001670 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (1034)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 233 (1034)
+.. ++.++.+.+....++..+...-....+.+...+..+..+..++..+..++..++..+..+
T Consensus 145 ~~~-~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~ 207 (562)
T PHA02562 145 MQL-SAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ 207 (562)
T ss_pred hcC-ChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 877 456777777777666555444444455555666666666666666666555555444444
No 20
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.96 E-value=1.7e-19 Score=186.25 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCceeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCC-------CcC-Ccccccch
Q 001670 8 SESGYGPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGC-------RAK-GTQRAATL 79 (1034)
Q Consensus 8 ~~~~~~~~~~~~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~-------~~~-~~~r~~~~ 79 (1034)
|+.++.+--+.-.++.+|.+.||+.|.-..|+...+-.+++|..||||||++|||..+|-. ++. ..-+..++
T Consensus 3 S~~~L~~i~~~~FRL~~iqliNWGTF~T~~~~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL 82 (1104)
T COG4913 3 SEQALDPIHPGQFRLSRIQLINWGTFHTVDIPVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSL 82 (1104)
T ss_pred ccccCCCCCCCceeeeEEEEeeccccceeeeeEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHH
Confidence 5566665555568999999999999997777776656899999999999999999988721 111 11122345
Q ss_pred hhhhh--------------------cCCceEEEEEEEEecCCCCCCcccCCCeEEEEEEee---cCcceEEE
Q 001670 80 KDFIK--------------------TGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT---ESTSTTVL 128 (1034)
Q Consensus 80 ~~~i~--------------------~g~~~a~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~---~~~~~~~i 128 (1034)
..||+ ..++++.|-++|.|+ +|.++++.-.|+ +..+.|+.
T Consensus 83 ~tYi~G~~raq~~~~~~~~~~~~LR~~a~YSlv~~~~~NG---------~~~~~TL~~iF~LK~S~~~~~~~ 145 (1104)
T COG4913 83 VTYIRGAWRAQEDPLQDQIVSTYLRPRATYSLVGLTYSNG---------EGVEHTLVAIFYLKSSDISSYYG 145 (1104)
T ss_pred HHHHHHHHhhccCccccceeeeeeccccceEEEEEEeecC---------CCeeEEEEEEEEeeccCCCceee
Confidence 55552 334678888999884 456788888887 33455655
No 21
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.94 E-value=5.4e-19 Score=199.44 Aligned_cols=164 Identities=21% Similarity=0.293 Sum_probs=118.4
Q ss_pred ceeEeEEEEEecccccc---ceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcC----C--ce
Q 001670 19 AGTITRVRLENFMCHSS---LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG----C--SY 89 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~~~---~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g----~--~~ 89 (1034)
|..|.++.|.|.+||++ .+|.|..++|+|+||||+|||||+.++.|+..|..|.+.+| ..||++. . ..
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~ 77 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVR 77 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhh
Confidence 34688899999999954 58899888999999999999999999999997776665665 4466653 2 35
Q ss_pred EEEEEEEEecCCCCCCcccCCCeEEEEEEee-c-C----------cceEEEecCCCCcccccHHHHHH-HHhhcCCC--c
Q 001670 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT-E-S----------TSTTVLKDHQGKRVASRKQELLE-LIDHFNID--V 154 (1034)
Q Consensus 90 a~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~-~----------~~~~~i~~~~g~~~~~~~~~~~~-~~~~~~i~--~ 154 (1034)
|.|.+.|.+.+ |..+++.|++. . + +.-+.+++..+..++.+..++.. +..++|.+ +
T Consensus 78 AqvkL~f~~~~---------G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAI 148 (1294)
T KOG0962|consen 78 AQVKLAFTDVN---------GETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAI 148 (1294)
T ss_pred heeeeeeecCC---------CcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHH
Confidence 88999998764 46789999886 2 2 23356665455666667778876 56666776 5
Q ss_pred CCCeeeecchhhHHhhhcCCc-hhhHHHHHhhhhHHHHHHH
Q 001670 155 ENPCVIMSQDKSREFLHSGND-KDKFKFFFKATLLQQVNDL 194 (1034)
Q Consensus 155 ~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~ 194 (1034)
.|.+.|++|+...|++...+. ..+|.-...++.+....+.
T Consensus 149 l~~VIFcHQEdS~WPLsEp~~LKkkfD~IF~~tky~KAld~ 189 (1294)
T KOG0962|consen 149 LENVIFCHQEDSTWPLSEPKNLKKKFDDIFSATKYTKALDS 189 (1294)
T ss_pred HhhhheecccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999998877432 3344444555554443333
No 22
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.93 E-value=4.7e-22 Score=222.59 Aligned_cols=191 Identities=22% Similarity=0.297 Sum_probs=137.2
Q ss_pred eEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEecC
Q 001670 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (1034)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~~ 100 (1034)
+|.+|.|.||++|...+|+|+||+|+|+||||||||+|++||.|++|++.. .++|+.|+..+.|+++|.+.+
T Consensus 1 Ml~~l~i~nf~~~~~~~i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~~--------~~~i~~~~~~~~v~~~f~~~~ 72 (563)
T TIGR00634 1 MLTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRAG--------ASRVRSGENRAVVEGRFTTES 72 (563)
T ss_pred CceEEEEcceeeeeeeEEecCCCeEEEECCCCCCHHHHHHHHHHHhCcCch--------HHHhcCCCCeEEEEEEEccCC
Confidence 388999999999999999999999999999999999999999999998743 678999999999999998754
Q ss_pred CCC---------CCc-ccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHh
Q 001670 101 EDA---------FKP-EIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (1034)
Q Consensus 101 ~~~---------~~~-~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~ 169 (1034)
... ..+ +..++.++|+|.+. +|.+.|+| ||++++ ...+.++...+ +.+.+|.....+
T Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~i---Ng~~v~--~~~l~~l~~~l-------i~i~gQ~~~~~l 140 (563)
T TIGR00634 73 LDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYL---NGKPVS--ASSLLEFTSEL-------LDLHGQHDQQLL 140 (563)
T ss_pred CchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEE---CCEEcc--HHHHHHHhcCe-------EEEECchHHHHh
Confidence 321 011 11135789999998 88999999 577774 46787776433 334444432222
Q ss_pred hhcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001670 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME 234 (1034)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~ 234 (1034)
..+..+..++.....+..+...+......+..+...+.++.........+++.++-+++.++
T Consensus 141 ---~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 141 ---FRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred ---cCHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 13344444444444445556666666677777777777776666666666666666666654
No 23
>PRK10869 recombination and repair protein; Provisional
Probab=99.92 E-value=1.3e-21 Score=215.54 Aligned_cols=186 Identities=18% Similarity=0.312 Sum_probs=125.2
Q ss_pred eEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEecC
Q 001670 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (1034)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~~ 100 (1034)
+|.+|.|.||++|+..+|+|+||+|+||||||||||+|++||.|+||+++. .++|++|+..|.|+.+|+..+
T Consensus 1 ML~~L~I~nf~~i~~~~i~f~~glnvitGetGaGKS~ildAi~~llG~r~~--------~~~ir~g~~~a~Ve~~F~~~~ 72 (553)
T PRK10869 1 MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRAE--------ASMVRPGATRADLCARFSLKD 72 (553)
T ss_pred CccEEEEcccccceeeEEecCCCcEEEECCCCCChHHHHHHHHHHhCCCcc--------cccccCCCCcEEEEEEEecCC
Confidence 378999999999999999999999999999999999999999999997654 578999999999999998743
Q ss_pred CCC-------CCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCC---eeeecchhhHHh
Q 001670 101 EDA-------FKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENP---CVIMSQDKSREF 169 (1034)
Q Consensus 101 ~~~-------~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~q~~~~~~ 169 (1034)
... +-.+ .++.++|+|.+. +|++.|+| ||.++ +...+..+...+ +++.++ ...++++....+
T Consensus 73 ~~~~~~~l~~~~~~-~~~~~~i~R~i~~~g~s~~~I---Ng~~v--~~~~l~~l~~~l-i~ihgQ~~~~~ll~~~~~~~l 145 (553)
T PRK10869 73 TPAALRWLEDNQLE-DGNECLLRRVISSDGRSRGFI---NGTPV--PLSQLRELGQLL-IQIHGQHAHQLLLKPEHQKTL 145 (553)
T ss_pred ChHHHHHHHhcCCC-CCCeEEEEEEEecCCcceEEE---CCeec--cHHHHHHHHHhh-hheeCcChHHHhcCHHHHHHH
Confidence 210 0011 235789999998 88999999 56666 456788887766 443322 233444444444
Q ss_pred hhcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001670 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (1034)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 233 (1034)
+..-. +...+...+.........+...+.++........++++-++-+++.+
T Consensus 146 LD~~~------------~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 146 LDAYA------------NETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHhc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44322 21223334444444444455555555444444444455454444444
No 24
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=2.4e-16 Score=167.88 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=82.3
Q ss_pred eeEeEEEEEeccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEe
Q 001670 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKN 98 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~ 98 (1034)
|+|.+|+|.||+.|...+|+|++. +++|+|+|.+|||||+.+|.-.|+|.|.+ .+-..+. .+.|..++-+-+..+.
T Consensus 1 MrI~sl~I~gYGKFs~r~~df~~s~f~vI~G~NEAGKSTl~sFI~smlFGfP~~-sk~~~~e--P~~Gg~yGG~L~~~~~ 77 (984)
T COG4717 1 MRIQSLEIVGYGKFSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTS-SKYPRLE--PKQGGQYGGRLVAIDR 77 (984)
T ss_pred CceeEEEeeeccchhhhhhhccCCceEEEecCccccHHHHHHHHHHHHcCCCCC-CCCCCCC--cccCCCcccEEEEecC
Confidence 899999999999999999999886 99999999999999999999999988864 2222121 2355555544333332
Q ss_pred cCCCCCCcccCCCeEEEEEEeecCcceEEEecCCCCcccccHHHHHHHHhhc
Q 001670 99 RGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHF 150 (1034)
Q Consensus 99 ~~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~ 150 (1034)
. |..|.|+|.-++..+...++-++|.+-+ .+.+..++.+.
T Consensus 78 ~----------~~~~~IER~kgsa~gdvkvylpdG~v~~--~~~L~k~lg~i 117 (984)
T COG4717 78 E----------GGAYRIERNKGSAIGDVKVYLPDGNVGS--KTLLSKLLGSI 117 (984)
T ss_pred C----------CceEEEEeccCcccCCceEECCCCCccc--hHHHHHHHhhh
Confidence 2 3579999987744445566666776553 24455555443
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.91 E-value=3e-17 Score=200.16 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=56.3
Q ss_pred cchhhHHhhhcCCchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001670 162 SQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEIT 240 (1034)
Q Consensus 162 ~q~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 240 (1034)
.|...+.++...++...|+.....+. ..+..+.+++..+...+.+++.+++.++.+.+........-.++..+.
T Consensus 153 kp~err~iiEEaaGv~~y~~r~~ea~-----~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~ 226 (1163)
T COG1196 153 KPEERRKLIEEAAGVSKYKERKEEAE-----RKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELE 226 (1163)
T ss_pred CHHHHHHHHHHHhchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888889888876665554 788888899999999999999999999988887766665544433333
No 26
>PF13514 AAA_27: AAA domain
Probab=99.90 E-value=1e-15 Score=186.80 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCceeEEeeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhhhh-----cC
Q 001670 921 TLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM-----TE 995 (1034)
Q Consensus 921 ~~i~~~~~~~F~~~~~~~g~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~~~-----~~ 995 (1034)
..+....+.+|..+.. |-...|.+|++.++..+.+.- +.| ...++..||+|-+--+.|||-||+... .|
T Consensus 979 p~vl~~As~~f~~LT~--G~Y~~l~~d~d~~~~~l~~~~---~~G-~~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~ 1052 (1111)
T PF13514_consen 979 PPVLARASEYFSRLTG--GRYSRLRVDEDGDKPVLVVVR---ADG-ERVPVEELSRGTRDQLYLALRLALAELLAEQGEP 1052 (1111)
T ss_pred HHHHHHHHHHHHHHhC--CCCceeeeccccCcccceEEe---cCC-eEeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445556667776654 322356777655443344442 123 345788999999999999999998654 45
Q ss_pred CCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 996 APFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 996 ~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
.||++ |++=+.. .-...++.+|-+++. .+|+|+.
T Consensus 1053 lP~Il-DD~fvnfDd~R~~~~l~~L~~ls~---~~QVI~F 1088 (1111)
T PF13514_consen 1053 LPFIL-DDIFVNFDDERARAALELLAELSR---RRQVIYF 1088 (1111)
T ss_pred CcEEe-eCCccccCHHHHHHHHHHHHHhcc---CCeEEEE
Confidence 66555 8776666 555556666666553 4799874
No 27
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.89 E-value=5.5e-16 Score=196.58 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 871 SESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQL 927 (1034)
Q Consensus 871 ~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~i~~~~ 927 (1034)
...++.+..+++++......+...+..+..... ..+...|..+...|..++..+
T Consensus 985 ~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~---~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 985 LKRLDELKEKRAKLEEERKAILERIEEYEKKKR---EVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777765543 333444555555555554443
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.89 E-value=2.8e-14 Score=174.39 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=38.1
Q ss_pred eeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCccccc----chhhhhhcC
Q 001670 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA----TLKDFIKTG 86 (1034)
Q Consensus 37 ~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~----~~~~~i~~g 86 (1034)
+|.++ |.|-|+|-||+|||||+.+|.+-+|..|.....+. ++.+|..+.
T Consensus 13 El~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k~~~rksF~~yYLP~ 65 (1201)
T PF12128_consen 13 ELKLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPKTSGRKSFDDYYLPY 65 (1201)
T ss_pred EEecC-CceeeecCCCCcHHHHHHHHHHhcCCCccccCCccchhhhHHHHcCCC
Confidence 66777 77888899999999999999999998888765444 445554443
No 29
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.89 E-value=6.7e-19 Score=201.38 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=95.8
Q ss_pred eeEeEEEEEeccccc-cceeEcC----CCeEEEEcCCCCCHHHHHHHHHHHcCCCcCC-ccccc-chh----hhhhc---
Q 001670 20 GTITRVRLENFMCHS-SLQIELG----EWVNFITGQNGSGKSAILTALCIAFGCRAKG-TQRAA-TLK----DFIKT--- 85 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~-~~~i~f~----~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~-~~r~~-~~~----~~i~~--- 85 (1034)
|+|++|.|.||++|. ...++|+ +++++|+||||+||||+++||.|||||..+. ..|+. +.. ++++.
T Consensus 1 M~i~~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~~ 80 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQAG 80 (650)
T ss_pred CcccEEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccCC
Confidence 899999999999994 4567664 3599999999999999999999999887653 33433 222 33333
Q ss_pred CCceEEEEEEEEecCCCCCCcccCCCeEEEEEEee-c---CcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeee
Q 001670 86 GCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-E---STSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIM 161 (1034)
Q Consensus 86 g~~~a~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~---~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 161 (1034)
+...+.|+++|.+.+.+ ....|+|.|.|. + .+..+.+.. +|.....-...+.+++..+--....++||+
T Consensus 81 ~~~~~~V~l~f~~~~~~------~~~~y~i~R~w~~~~k~~~~~l~v~~-~~~~~~~~~~~~~~~i~~ilp~~~~~~FfF 153 (650)
T TIGR03185 81 KTNPASITLTFSVVEGG------KRHEYTLVRSWHINNKDVKEKLTVYK-DDEEDDSLNDIWDEFINELLPLELADLFFF 153 (650)
T ss_pred CCCCeEEEEEEEEccCC------ceEEEEEEEEecCCCCCCCCcEEEEE-CCcccchhhHHHHHHHHHhCCHhHHHHhcc
Confidence 23568999999865321 123588999986 2 233443332 231111111234455555422222358999
Q ss_pred cchhhHHhhhcCC
Q 001670 162 SQDKSREFLHSGN 174 (1034)
Q Consensus 162 ~q~~~~~~l~~~~ 174 (1034)
+++++..+.....
T Consensus 154 DGE~I~~la~~~~ 166 (650)
T TIGR03185 154 DGEKIEALANPDR 166 (650)
T ss_pred cHHHHHHHhcccc
Confidence 9999998776433
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.5e-13 Score=151.61 Aligned_cols=156 Identities=16% Similarity=0.245 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 281 AKIDSRHSILESLRDCFMKKKAEIAVMVEKT----SEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGL 356 (1034)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 356 (1034)
..+..+..++..+...+...+..+.+....+ ..+..++..++.++..+..++.....++.-.++++..+.......
T Consensus 440 ~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~ 519 (1293)
T KOG0996|consen 440 IEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETG 519 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333333333222 223344455555566666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001670 357 EQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRS 436 (1034)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 436 (1034)
...+..+...+ ........+....+..+...+..+..++.+...++..+......+...+..+..++.+++..++..+.
T Consensus 520 ~~~~e~lk~~L-~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 520 LKKVEELKGKL-LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 66666666555 23333345555566666666666666666666666666666666666666666666666665554443
Q ss_pred H
Q 001670 437 E 437 (1034)
Q Consensus 437 ~ 437 (1034)
+
T Consensus 599 ~ 599 (1293)
T KOG0996|consen 599 R 599 (1293)
T ss_pred h
Confidence 3
No 31
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.84 E-value=1e-17 Score=175.60 Aligned_cols=137 Identities=25% Similarity=0.423 Sum_probs=104.4
Q ss_pred EeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEecCC
Q 001670 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~~~ 101 (1034)
|.+|.|.||.-+...+++|++|+|+|||..|+|||-|+|||.+|||+++. .++|++|...+.|+..|..+..
T Consensus 2 L~~LsIknfaiIe~L~leF~~GltVlTGETGAGKSIiidAl~lllG~ra~--------~~~VR~G~~~a~v~a~F~~~~~ 73 (557)
T COG0497 2 LLELSIKNFAIIEELELEFEKGLTVLTGETGAGKSIIIDALGLLLGGRAD--------ASLVRHGAKRAEVEAIFDLDNP 73 (557)
T ss_pred CcEEeeeheeeeeeeeeeccCCceEEecCCCCcHhHHHHHHHHHhCCCCC--------cchhcCCCceeEEEEEecCCch
Confidence 78899999999999999999999999999999999999999999999976 5699999999999999997611
Q ss_pred CC--CCc---ccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCC---CeeeecchhhHHhhhc
Q 001670 102 DA--FKP---EIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVEN---PCVIMSQDKSREFLHS 172 (1034)
Q Consensus 102 ~~--~~~---~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~q~~~~~~l~~ 172 (1034)
.. |.. -.+.+.+.++|.+. +|.|.++| ||.+|+ ...+.++-..+ +++.+ ....+.++.-+.+|..
T Consensus 74 ~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~I---Ng~~Vs--~~~L~~l~~~L-i~IHGQh~~q~Ll~~~~~r~lLD~ 147 (557)
T COG0497 74 PARAWLEENGIEDDEEVILRRVISADGRSRAFI---NGQPVS--LAQLKELGQLL-IDIHGQHEHQSLLKPELQRQLLDA 147 (557)
T ss_pred HHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEE---CCEEee--HHHHHHHHHhh-heeeccchHHHhcChHHHHHHHHH
Confidence 10 000 01123788999999 88999999 577775 35666666655 33322 2344555555555554
No 32
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=4.5e-20 Score=185.45 Aligned_cols=148 Identities=27% Similarity=0.411 Sum_probs=116.9
Q ss_pred eeEeEEEEEecccccccee--EcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcC----CceEEEE
Q 001670 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG----CSYAMVE 93 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g----~~~a~v~ 93 (1034)
|+|++|.|.||++|...++ +|+|++|+|+||||||||||++||+|+||.......|.....++++.+ ...+.|.
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 7899999999999988876 899999999999999999999999999997655456776666788654 3478999
Q ss_pred EEEEecCCCCCCcc-cCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhhh
Q 001670 94 VELKNRGEDAFKPE-IFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1034)
Q Consensus 94 l~~~~~~~~~~~~~-~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l~ 171 (1034)
+.|.+.+...+.+. ...+.++|.|.+. .....|+++ ++.. ...++.+++..+|+.++++++++.|+++..++.
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in---~~~~--~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLIN---GHRA--QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEEC---CEEe--eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 99998654321110 1235799999998 544556563 3332 346888999999999989999999999999887
Q ss_pred c
Q 001670 172 S 172 (1034)
Q Consensus 172 ~ 172 (1034)
.
T Consensus 156 ~ 156 (251)
T cd03273 156 M 156 (251)
T ss_pred h
Confidence 6
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.84 E-value=4.3e-13 Score=148.63 Aligned_cols=249 Identities=16% Similarity=0.277 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 001670 188 LQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTL 267 (1034)
Q Consensus 188 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1034)
|..+...+..+.+.+......+..+++++...+..+..+..--...+....+..++.|...--...++......+...+.
T Consensus 216 ~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qe 295 (1074)
T KOG0250|consen 216 YSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQE 295 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777888888888888888888877777776666667788888899998888777888888888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 268 KIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQ 347 (1034)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1034)
....+...+......+..+...+.+.++++..+..+...-..++..+...+..+..+..+++.++....+.+...+..+.
T Consensus 296 k~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d 375 (1074)
T KOG0250|consen 296 KVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVD 375 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889888888888888888888888888888877777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001670 348 KMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDY 427 (1034)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 427 (1034)
.+...+..++.+............+.++..+..+++.++..+..+..++..+...+...+.+.......+..+...+...
T Consensus 376 ~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 376 RLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766663222222244555667777777777777777777777777666666666666666666666666666
Q ss_pred HHHHHHHHH
Q 001670 428 DKKCREIRS 436 (1034)
Q Consensus 428 ~~~~~~l~~ 436 (1034)
...+..+..
T Consensus 456 ~~~l~~lk~ 464 (1074)
T KOG0250|consen 456 SEELKDLKK 464 (1074)
T ss_pred HHHHHHHHh
Confidence 666655543
No 34
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.6e-13 Score=146.99 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=36.8
Q ss_pred CchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001670 174 NDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME 234 (1034)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~ 234 (1034)
.+.+++..+..+..|-............+.+....+..+...+.....+++.++.+++.++
T Consensus 225 ~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~ 285 (1174)
T KOG0933|consen 225 RDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIE 285 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3555555555565555555555555666666666666666666666666666666665553
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.83 E-value=2.3e-13 Score=173.67 Aligned_cols=169 Identities=16% Similarity=0.253 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhh
Q 001670 196 QSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDR 275 (1034)
Q Consensus 196 ~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 275 (1034)
..+...+......+..+...+..+..++..+..+.+.++.+..+..++..+...+....+..+...+..+...+..+...
T Consensus 168 ~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (1179)
T TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEE 247 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777778888888888889999999999999999999999999999988888777878888888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 276 IPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKG 355 (1034)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1034)
+......+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+......+..+..++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 327 (1179)
T TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888887777777776666666666666555555555555
Q ss_pred HHHHHHHHH
Q 001670 356 LEQQVHDIQ 364 (1034)
Q Consensus 356 l~~~~~~~~ 364 (1034)
+...+..+.
T Consensus 328 ~~~~~~~~~ 336 (1179)
T TIGR02168 328 LESKLDELA 336 (1179)
T ss_pred HHHHHHHHH
Confidence 554444443
No 36
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=1.3e-18 Score=173.95 Aligned_cols=139 Identities=26% Similarity=0.332 Sum_probs=113.2
Q ss_pred EeEEEEEeccccc-cceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCc------eEEEEE
Q 001670 22 ITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (1034)
Q Consensus 22 i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~------~a~v~l 94 (1034)
|++|.|.||++|. ..+|+|.+++|+|+||||||||||++||+|+||+.+. ..|+....++|+.|.. .+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~-~~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSS-HLRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCCCcc-cccccchhhhcccCccccCCCceEEEEE
Confidence 6799999999996 4579999999999999999999999999999987643 3577777888888865 789999
Q ss_pred EEEecCCCCCCcccCCCeEEEEEEeecCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhhhcCC
Q 001670 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGN 174 (1034)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l~~~~ 174 (1034)
+|.+.++ ..+.+.|.+..+...|++ +|+.++ ..++.+++..+|++++.+.+++.|+.+..+....+
T Consensus 80 ~f~~~~~---------~~~~~~~~~~~~~~~~~i---ngk~~s--~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 80 VYEDDDG---------EEKTFRRIITGGSSSYRI---NGKVVS--LKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred EEEcCCC---------cEEEEEEEEECCceEEEE---CCEEec--HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 9987532 345666666667777888 455543 46888999999999998888899999999988765
Q ss_pred c
Q 001670 175 D 175 (1034)
Q Consensus 175 ~ 175 (1034)
+
T Consensus 146 ~ 146 (247)
T cd03275 146 P 146 (247)
T ss_pred c
Confidence 4
No 37
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.1e-15 Score=160.52 Aligned_cols=178 Identities=14% Similarity=0.177 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 846 GSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQ---TYQAFREKVRACREALDSRWGKFQRNATL 922 (1034)
Q Consensus 846 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~---~~~~l~~~i~~l~~~l~~~~~~~~~~~~~ 922 (1034)
+..++++..++..+..-.++ +....+++....+++..++..++. .++.++..+..+...+.+....+...+..
T Consensus 296 p~~L~~ve~Rl~~L~~l~RK----Y~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~ 371 (557)
T COG0497 296 PNRLEEVEERLFALKSLARK----YGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKK 371 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888877775554 777888888888888888887774 48888899999999998888899999999
Q ss_pred HHHHHHHHHHHHHhhcCCce-eEEe--ec--------cCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhh
Q 001670 923 LKRQLTWQFNGHLGKKGISG-KINI--NY--------EEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALH 991 (1034)
Q Consensus 923 i~~~~~~~F~~~~~~~g~~g-~~~~--~~--------~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~ 991 (1034)
....+.......+..+++.+ .+.+ .+ ..+.+.+.|+.+++.|.+|+..+. ||||.|+++|||..++.
T Consensus 372 ~A~~L~~~v~~eL~~L~Me~a~F~ve~~~~~~~~t~~G~d~VeF~istNpG~~~~PL~KvA--SGGELSRimLAlk~i~~ 449 (557)
T COG0497 372 AAKELEKEVTAELKALAMEKARFTVELKPLEESPTADGADKVEFLISTNPGEPLKPLAKVA--SGGELSRIMLALKVILS 449 (557)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCcCCcceEEEEEeCCCCCCCccHHhhc--chhHHHHHHHHHHHHHh
Confidence 99999999999999998865 4433 22 124567888888777777776666 99999999999999999
Q ss_pred hhcCCCeeEeehhhhhh---hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 992 EMTEAPFRAMDEFDVFM---VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 992 ~~~~~Pf~vlDEiD~~~---~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
.....|.+||||||+|+ |+..++-. |-+. ..++|+|+|
T Consensus 450 ~~~~~ptlIFDEVD~GIsG~~A~aVg~~-L~~L---s~~~QVl~V 490 (557)
T COG0497 450 RKDDTPTLIFDEVDTGISGRVAQAVGKK-LRRL---SEHHQVLCV 490 (557)
T ss_pred ccCCCCeEEEecccCCCChHHHHHHHHH-HHHH---hcCceEEEE
Confidence 99999999999999999 77777763 3333 347899988
No 38
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.78 E-value=2e-18 Score=170.90 Aligned_cols=127 Identities=35% Similarity=0.489 Sum_probs=100.3
Q ss_pred eEeEEEEEecccc--ccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhc-----CCceEEEE
Q 001670 21 TITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVE 93 (1034)
Q Consensus 21 ~i~~i~l~nf~~~--~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~-----g~~~a~v~ 93 (1034)
+|++|+|.||++| ....++|+|++|+|+||||||||||++||.||||+++....|.....++|+. ....|.|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 5899999999999 6788999999999999999999999999999999988877899999999987 45679999
Q ss_pred EEEEecCCCCCCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcC
Q 001670 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVE 155 (1034)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~ 155 (1034)
+.|.+.+.. .......+.|.|.+. .+.+.|++ +++.+ +..++..++...++...
T Consensus 81 ~~~~~~~~~---~~~~~~~~~i~r~~~~~~~~~~~i---n~~~~--~~~~~~~~l~~~~i~~~ 135 (220)
T PF02463_consen 81 LIFDNSDEE---FELDKKEIEISRRIDRKGRSEYKI---NGKKV--RLKDLEELLPEVGISPE 135 (220)
T ss_dssp EEEECTTEE---SSSSSSEEEEEEEEETTS-EEEEE---TTEEE---HHHHHHHHHCTTTTTT
T ss_pred ccccccccc---cccccccccccccccccccccccc---ccccc--ccccccccccccccccc
Confidence 999877543 122345789999988 77789999 45555 44788888888877654
No 39
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2e-10 Score=124.58 Aligned_cols=104 Identities=13% Similarity=0.250 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001670 336 EGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKN 415 (1034)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 415 (1034)
..++..+...+.........++.++..++..+ .....++..+...+.+...++..+......+..++.++......++.
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l-~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESEL-KEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555554443 23334456666666667777777777777778888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 001670 416 EIRRISDEIEDYDKKCREIRSEIRE 440 (1034)
Q Consensus 416 ~~~~l~~~~~~~~~~~~~l~~~l~~ 440 (1034)
+-..++..+..+...+...+..+..
T Consensus 475 EE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777777666544
No 40
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.2e-18 Score=171.81 Aligned_cols=115 Identities=30% Similarity=0.432 Sum_probs=93.4
Q ss_pred EeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEecCC
Q 001670 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~~~ 101 (1034)
|.+|.|.||++|...+|+|+||+|+|+||||||||||++||+|++|+++. .++++.|...+.|+++|.+.+.
T Consensus 1 l~~l~i~nf~~~~~~~i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 72 (276)
T cd03241 1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGRAS--------ADLIRSGAEKAVVEGVFDISDE 72 (276)
T ss_pred CcEEEEeCccceeeeEEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCCh--------HHHhhCCCCeEEEEEEEecCCc
Confidence 57899999999999999999999999999999999999999999998732 6789999999999999987543
Q ss_pred CC------CCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhh
Q 001670 102 DA------FKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDH 149 (1034)
Q Consensus 102 ~~------~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~ 149 (1034)
.. +....+++.++|+|.+. +|++.|+| ||+.++ .+.+.++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~I---ng~~vs--l~~l~~i~~~ 122 (276)
T cd03241 73 EEAKALLLELGIEDDDDLIIRREISRKGRSRYFI---NGQSVT--LKLLRELGSL 122 (276)
T ss_pred hHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEE---CCEEEC--HHHHHHHHHh
Confidence 21 00112356899999998 88999999 566653 4677776533
No 41
>PRK14079 recF recombination protein F; Provisional
Probab=99.75 E-value=1.6e-16 Score=165.87 Aligned_cols=123 Identities=22% Similarity=0.291 Sum_probs=95.3
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEec
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|.|.||++|...+++|+||+|+|+||||||||||++||.|++|++ .|..+..++|+.|...+.|.++|...
T Consensus 1 M~i~~l~l~nfRn~~~~~l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs----~r~~~~~~lI~~g~~~~~v~~~~~~~ 76 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGE----LPNGRLADLVRFGEGEAWVHAEVETG 76 (349)
T ss_pred CEEEEEEEeccCCcccceEEeCCCeEEEECCCCCCHHHHHHHHHHHhcCC----CCCCcHHhheecCCCcEEEEEEEEeC
Confidence 78999999999999999999999999999999999999999999999983 35566789999999999999999765
Q ss_pred CCCCCCcccCCCeEEEEEEeecCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhh
Q 001670 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l 170 (1034)
+. .+.+...+..+++.|+| ||+++ +..++..++ |+.++.|+...-+.
T Consensus 77 ~~----------~~~~~~~~~~~~~~~~i---ng~~~--~~~~l~~~~---------~~v~~~p~d~~li~ 123 (349)
T PRK14079 77 GG----------LSRLEVGLGPGRRELKL---DGVRV--SLRELARLP---------GAVLIRPEDLELVL 123 (349)
T ss_pred CC----------eEEEEEEEEcCceEEEE---CCeec--CHHHHHhhh---------cEEEEecCchHhhh
Confidence 32 23445555545567888 56666 334555543 45556777766544
No 42
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.4e-17 Score=164.33 Aligned_cols=100 Identities=24% Similarity=0.415 Sum_probs=85.5
Q ss_pred EeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEecCC
Q 001670 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~~~ 101 (1034)
|++|.|.||++|.+.+++|+||+|+|+||||||||||++||.|++|+++ .|.....++|+.|...+.|+++|.+.+
T Consensus 1 l~~l~i~nfr~~~~~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~---~r~~~~~~~i~~~~~~~~v~~~f~~~~- 76 (270)
T cd03242 1 LKSLELRNFRNYAELELEFEPGVTVLVGENAQGKTNLLEAISLLATGKS---HRTSRDKELIRWGAEEAKISAVLERQG- 76 (270)
T ss_pred CcEEEEeCCcCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHhccCCC---CCCCCHHHHHhcCCCCEEEEEEEEeCC-
Confidence 5789999999999999999999999999999999999999999999765 355567899999999999999998753
Q ss_pred CCCCcccCCCeEEEEEEee-cCcceEEEecCCCCccc
Q 001670 102 DAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVA 137 (1034)
Q Consensus 102 ~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~ 137 (1034)
..+.|.|.+. ++++.|++ ||..++
T Consensus 77 ---------~~~~i~~~~~~~~~~~~~i---ng~~~~ 101 (270)
T cd03242 77 ---------GELALELTIRSGGGRKARL---NGIKVR 101 (270)
T ss_pred ---------CeEEEEEEEEcCCceEEEE---CCeecc
Confidence 2478889886 67788999 455553
No 43
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=8.7e-18 Score=161.88 Aligned_cols=80 Identities=39% Similarity=0.717 Sum_probs=73.9
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEec
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|.|.+|++.||++|+..+++|+||+|+|+||||||||||++||+++||+.+....|+..+.++++.|...+.|+++|.+.
T Consensus 1 ~~i~~i~i~nfr~~~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 80 (213)
T cd03277 1 GSIVRIKLENFVTYDETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN 80 (213)
T ss_pred CeeEEEEEeCCCCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC
Confidence 57999999999999988999999999999999999999999999999998876668778899999999999999999765
No 44
>PRK00064 recF recombination protein F; Reviewed
Probab=99.73 E-value=3.2e-16 Score=164.71 Aligned_cols=111 Identities=26% Similarity=0.414 Sum_probs=91.6
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEec
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|.|.||++|.+.+++|+||+|+|+||||||||||++||.+++++++. |.....++|+.|...+.|+.+|.++
T Consensus 1 M~i~~l~i~nfr~~~~~~l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~---r~~~~~~li~~g~~~~~v~~~~~~~ 77 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSH---RTARDKELIRFGAEAAVIHGRVEKG 77 (361)
T ss_pred CEEEEEEEeCCCcccceEEEecCCeEEEECCCCCCHHHHHHHHHHhCCCCCc---cCCChhHHHhcCCCcEEEEEEEEeC
Confidence 7899999999999999999999999999999999999999999998877653 6667789999999999999999764
Q ss_pred CCCCCCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHH
Q 001670 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELI 147 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~ 147 (1034)
+ ..+.|.|.+. ++.+.|+| ||+++. +..++..++
T Consensus 78 ~----------~~~~i~~~~~~~~~~~~~i---ng~~~~-~~~~l~~~~ 112 (361)
T PRK00064 78 G----------RELPLGLEIDKKGGRKVRI---NGEPQR-KLAELAGLL 112 (361)
T ss_pred C----------cEEEEEEEEEcCCceEEEE---CCcccc-CHHHHhhhc
Confidence 2 3467888877 56678888 566553 234555544
No 45
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.73 E-value=7.1e-10 Score=116.30 Aligned_cols=49 Identities=29% Similarity=0.446 Sum_probs=45.3
Q ss_pred CceeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 18 ~~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.|++.+++++||-+|-..+++++.-+|.+.|.||+||||.|.|+..+|
T Consensus 3 eRGKfrSLTliNWNGFFARTFDlDeLVTTLSGGNGAGKSTTMA~FvTAL 51 (1480)
T COG3096 3 ERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51 (1480)
T ss_pred cccccceeeEeeccchhhhhccHHHHHHhccCCCCCcccchHHHHHHHH
Confidence 4689999999999999888999999899999999999999999998877
No 46
>PRK10869 recombination and repair protein; Provisional
Probab=99.71 E-value=6.1e-14 Score=155.20 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=139.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 846 GSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQ---QTYQAFREKVRACREALDSRWGKFQRNATL 922 (1034)
Q Consensus 846 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~l~---~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~ 922 (1034)
+..+++++.++..+..-.++ ++..++++...++++..++..++ ..+..+...+..+...+......+...+..
T Consensus 295 p~~l~~ie~Rl~~l~~L~rK----yg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 295 PNRLAELEQRLSKQISLARK----HHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888887774444 78889999999999999988777 458889999999988888888899999999
Q ss_pred HHHHHHHHHHHHHhhcCCce-eEEeec--c--------CceeEEEEecCCCCCCCcccCC-CCCCcccchHHHHHHHHHh
Q 001670 923 LKRQLTWQFNGHLGKKGISG-KININY--E--------EKTLSIEVKMPQDASSSNVRDT-RGLSGGERSFSTLCFALAL 990 (1034)
Q Consensus 923 i~~~~~~~F~~~~~~~g~~g-~~~~~~--~--------~~~l~i~v~~~~~~~~~~~~~~-~~lSGGEks~~~lall~al 990 (1034)
.+..|.......+..+|+.+ .+.+.+ . -+.+++.|.+++ |.++.++ +.|||||+++++||+.+++
T Consensus 371 aA~~l~~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~---g~~~~pL~k~lSgGe~~Ri~LA~~~~~ 447 (553)
T PRK10869 371 YAKELAQLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTTNP---GQPLQPIAKVASGGELSRIALAIQVIT 447 (553)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEecCC---CCCcchhhhhCCHHHHHHHHHHHHHHh
Confidence 99999999999999999965 443332 1 134667777654 4455554 4689999999999999999
Q ss_pred hhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 991 HEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 991 ~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
....+.|++||||||+|+ ........+|.+.+ ...|+|+|
T Consensus 448 ~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~---~~~qvi~i 489 (553)
T PRK10869 448 ARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG---ESTQVMCV 489 (553)
T ss_pred ccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh---cCCEEEEE
Confidence 888889999999999999 45554555555543 24888887
No 47
>PRK02224 chromosome segregation protein; Provisional
Probab=99.71 E-value=9.5e-10 Score=133.62 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEeeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhhhh--------c
Q 001670 923 LKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM--------T 994 (1034)
Q Consensus 923 i~~~~~~~F~~~~~~~g~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~~~--------~ 994 (1034)
+...|...|..+|.. ++...+.++ ++ +.+.+.- ++|..+ ++..||||++..++|||.+|++.+ .
T Consensus 739 ~~~~~~~~~~~~~~~-~~~~~i~~~-~~--~~i~~~~---~~g~~~-~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~ 810 (880)
T PRK02224 739 LERMLNETFDLVYQN-DAYSHIELD-GE--YELTVYQ---KDGEPL-EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDA 810 (880)
T ss_pred HHHHHHHHHHHHcCC-CCeeEEEec-CC--cceeeeC---CCCCcc-ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 334455555554431 122345554 22 3444422 234433 567899999999999999988653 2
Q ss_pred CCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 995 EAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 995 ~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|+|++||||++++| .++.....+|..+ +..+.+|||||
T Consensus 811 ~~~~~ilDEp~~~lD~~~~~~~~~~l~~~-~~~~~~qviii 850 (880)
T PRK02224 811 PLPPLILDEPTVFLDSGHVSQLVDLVESM-RRLGVEQIVVV 850 (880)
T ss_pred CCCceEecCCcccCCHHHHHHHHHHHHHH-HhcCCCeEEEE
Confidence 56889999999999 4444444545443 33456799987
No 48
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.69 E-value=2.2e-16 Score=159.11 Aligned_cols=142 Identities=23% Similarity=0.350 Sum_probs=108.9
Q ss_pred EeEEEEEecccccccee--EcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCc----eEEEEEE
Q 001670 22 ITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVEVE 95 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~----~a~v~l~ 95 (1034)
|++|+|.||++|++..+ +|+|++|+|+||||||||||++||.|+||...+. .|..+..++++.|.. .++|+++
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEE
Confidence 67999999999987766 8899999999999999999999999999877655 565556788887764 5889999
Q ss_pred EEecCCCCCCcccCCCeEEEEEEeecCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHHhhhc
Q 001670 96 LKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (1034)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~~l~~ 172 (1034)
|.+.+.. .| .....+.+.|.+......|.++ ++.+ +..++..++..+|+...+++++++|+.+..++..
T Consensus 80 ~~~~~~~--~~-~~~~~~~i~r~ig~~~~~~~l~---~~~~--t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l 148 (243)
T cd03272 80 FDNSDNR--FP-IDKEEVRLRRTIGLKKDEYFLD---KKNV--TKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNM 148 (243)
T ss_pred EEcCCCc--cC-CCCCEEEEEEEEECCCCEEEEC---CeEc--CHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhc
Confidence 9775331 11 1235688999888555677774 3222 3457888888889888777888888888776554
No 49
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.68 E-value=7.9e-17 Score=150.18 Aligned_cols=78 Identities=33% Similarity=0.501 Sum_probs=69.4
Q ss_pred EeEEEEEeccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccch---hhhhhcCCceEEEEEEEE
Q 001670 22 ITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL---KDFIKTGCSYAMVEVELK 97 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~---~~~i~~g~~~a~v~l~~~ 97 (1034)
|++|++.||++|...++.|.++ +|+|+||||||||||++||+|++|+++....+...+ .++++.|...++|+|+|.
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~ 80 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFD 80 (178)
T ss_pred CcEEEEECccCCCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEE
Confidence 5789999999999888877666 999999999999999999999999998876666654 777899999999999998
Q ss_pred ec
Q 001670 98 NR 99 (1034)
Q Consensus 98 ~~ 99 (1034)
+.
T Consensus 81 ~~ 82 (178)
T cd03239 81 KS 82 (178)
T ss_pred Cc
Confidence 75
No 50
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.68 E-value=6.6e-17 Score=115.14 Aligned_cols=49 Identities=35% Similarity=0.489 Sum_probs=45.2
Q ss_pred EeEEEEEeccccccceeEcCC-C-eEEEEcCCCCCHHHHHHHHHHHcCCCc
Q 001670 22 ITRVRLENFMCHSSLQIELGE-W-VNFITGQNGSGKSAILTALCIAFGCRA 70 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~-~-~~~I~G~NGsGKSti~~ai~~~Lg~~~ 70 (1034)
+++|.|.||++|...+++|++ | +++|+||||||||||+|||.|+|++..
T Consensus 1 L~rl~L~Nw~~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 478999999999889999986 3 899999999999999999999998876
No 51
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.64 E-value=6.1e-13 Score=149.64 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 846 GSTPEQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQ---QTYQAFREKVRACREALDSRWGKFQRNATL 922 (1034)
Q Consensus 846 ~~~~~~l~~~l~~l~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~l~---~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~ 922 (1034)
+..+++++.++..+....++ +...++++...++.++.++..+. ..++.+...+..+...+......+...+..
T Consensus 300 p~~L~ele~RL~~l~~LkrK----yg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRK----YGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888877775554 67788899998888888888776 458888889988888888888889999999
Q ss_pred HHHHHHHHHHHHHhhcCCce-eEEeec--c-------------CceeEEEEecCCCCCCCcccCC-CCCCcccchHHHHH
Q 001670 923 LKRQLTWQFNGHLGKKGISG-KININY--E-------------EKTLSIEVKMPQDASSSNVRDT-RGLSGGERSFSTLC 985 (1034)
Q Consensus 923 i~~~~~~~F~~~~~~~g~~g-~~~~~~--~-------------~~~l~i~v~~~~~~~~~~~~~~-~~lSGGEks~~~la 985 (1034)
....|...+...+..+|+.+ .+.+.+ . -+.+.+.|++|+ |.++.++ ..|||||+++++||
T Consensus 376 ~a~~l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~G~d~v~f~~~~n~---g~~~~pl~~~lSgGe~~rv~la 452 (563)
T TIGR00634 376 AAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANT---GEPVKPLAKVASGGELSRVMLA 452 (563)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCCCceEEEEEEecCC---CCCCCChhhhcCHhHHHHHHHH
Confidence 99999999999999999875 443321 1 124667777653 4555555 57899999999999
Q ss_pred HHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 986 FALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 986 ll~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+.+++....+.|++||||+|+|| .++.....+|...+. ..|+|+|
T Consensus 453 ~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~---~~~vi~i 499 (563)
T TIGR00634 453 LKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE---RHQVLCV 499 (563)
T ss_pred HHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc---CCEEEEE
Confidence 99998766778999999999999 555555666666542 4788887
No 52
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=5.9e-14 Score=146.91 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=70.9
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEec
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|.|.||++|.+.+++|+||+|+|+||||||||||++||.+++++++. |.....++|+.|...+.|..+|.++
T Consensus 1 M~l~~L~i~nFR~~~~~~l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~---R~~~~~~li~~g~~~~~v~~~~~~~ 77 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSH---RTSRDKPLIRFGAEAFVIEGRVSKG 77 (365)
T ss_pred CEEEEEEEeCCcceeeeEEEECCCeEEEECCCCCCHHHHHHHHHHHcccCCc---cccchhhHHhCCCCeEEEEEEEEeC
Confidence 8899999999999999999999999999999999999999999998877653 6666788999999999999999865
Q ss_pred C
Q 001670 100 G 100 (1034)
Q Consensus 100 ~ 100 (1034)
+
T Consensus 78 ~ 78 (365)
T TIGR00611 78 D 78 (365)
T ss_pred C
Confidence 3
No 53
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.63 E-value=9e-16 Score=146.46 Aligned_cols=80 Identities=59% Similarity=0.873 Sum_probs=74.2
Q ss_pred EeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEecCC
Q 001670 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~~~ 101 (1034)
|.+|+|.||++|.+.+++|++|+|+|+||||||||||++||.+++|+......|+..+.++++.|...+.|.++|.+.+.
T Consensus 1 i~~l~l~nfr~~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~ 80 (198)
T cd03276 1 IESITLKNFMCHRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGL 80 (198)
T ss_pred CeEEEEeCccceeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCc
Confidence 57999999999999999999999999999999999999999999999887777888889999999999999999998753
No 54
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=4.1e-08 Score=108.96 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCChHHHHHHHHhccccceeecchhhHHHHHHHHHHhCCCCccEEEeec
Q 001670 488 GDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDF 536 (1034)
Q Consensus 488 ~~~~~~aie~~l~~~l~~~vv~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 536 (1034)
++.|..|+..+.|+. +||++..+|..+..- + ..+..++++++
T Consensus 590 e~e~eka~~~a~gn~---Lvcds~e~Ar~l~y~-~---~~r~k~valdG 631 (1141)
T KOG0018|consen 590 EPEYEKAVQFACGNA---LVCDSVEDARDLAYG-G---EIRFKVVALDG 631 (1141)
T ss_pred CHHHHHHHHHHhccc---eecCCHHHHHHhhhc-c---cccceEEEeee
Confidence 378899999999987 899999988776421 1 12455566654
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.59 E-value=2.4e-08 Score=121.43 Aligned_cols=64 Identities=8% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001670 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKN 702 (1034)
Q Consensus 639 ~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 702 (1034)
..+.+++.++..+...+..+..+...+..+...+...+.+....+..+.+....+..++..+..
T Consensus 1245 ~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~ 1308 (1930)
T KOG0161|consen 1245 AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKR 1308 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333333333333333333333333343333444444443333
No 56
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.58 E-value=5.5e-09 Score=114.92 Aligned_cols=178 Identities=13% Similarity=0.156 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 001670 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQ 265 (1034)
Q Consensus 186 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1034)
-.|..++.....+...+......+..++..+..+.+.++.+.+.......++-+.....|+..+....++..+......+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~ 260 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRA 260 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHH
Confidence 34556667777888888888899999999999999999999999888888888988889988888888888899999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 266 TLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSY 345 (1034)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1034)
+.++..+......+......++.+..+...++......+.+....+...-..+......+..+...+..+..........
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~ 340 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKR 340 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999989999999998888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001670 346 MQKMVNRVKGLEQQVHDI 363 (1034)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~ 363 (1034)
+......+..++..+...
T Consensus 341 i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 341 IEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 888888888887777653
No 57
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.58 E-value=4.9e-14 Score=141.25 Aligned_cols=123 Identities=24% Similarity=0.399 Sum_probs=93.7
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEEEec
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|.|.||++|.+.+++|+|++|+++|+||+|||||++||.++-.|++. |.....++|+.|+..+.|...+...
T Consensus 1 M~l~~L~L~nFRNy~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~---Rt~~~~~lir~~~~~~~i~~~v~~~ 77 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIYLLALGRSH---RTSRDKELIRTGADEAEISARVQRK 77 (363)
T ss_pred CceeeeehhhcCCcccceeccCCCcEEEECCCCCchHHHHHHHHHHccccCc---cccchhHHHhcCCccEEEEEEEeec
Confidence 7899999999999999999999999999999999999999999987666653 6667799999999999999999876
Q ss_pred CCCCCCcccCCCeEEEEEEee-cCcceEEEecCCCCcccccHHHHHHHHhhcCCCcCCCeeeecchhhHH
Q 001670 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSRE 168 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~q~~~~~ 168 (1034)
+. ..++.-.+. .|+....+| |..+. .+.+++..+ |+.++.|+...-
T Consensus 78 ~~----------~~~~~~~~~~~g~~~vrin---g~~~~----~~~el~g~l------~~vlf~Pedl~L 124 (363)
T COG1195 78 GR----------EGTLGLQISKKGRRRVRIN---GTKAR----KLAELAGHL------NVVLFTPEDLGL 124 (363)
T ss_pred cc----------eeeeEEEeccCcceEEEEC---Ccccc----cHHHHhhhC------ceEEeccccccc
Confidence 32 334444444 555557775 43332 244555444 566666666553
No 58
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.58 E-value=1.7e-07 Score=114.35 Aligned_cols=29 Identities=7% Similarity=0.187 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 877 LRMLYEEKEHKILRKQQTYQAFREKVRAC 905 (1034)
Q Consensus 877 ~~~~~~~~~~~~~~l~~~~~~l~~~i~~l 905 (1034)
+..+++............+..+...++.+
T Consensus 1454 l~~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1454 LQAELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333333333333333343333333
No 59
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.54 E-value=2.7e-14 Score=140.81 Aligned_cols=49 Identities=37% Similarity=0.617 Sum_probs=43.7
Q ss_pred EEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCC
Q 001670 24 RVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72 (1034)
Q Consensus 24 ~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~ 72 (1034)
+|+|.||++|.+.+|+|+||+|+|+||||+|||||++||.||||+.++.
T Consensus 1 ~i~i~nf~~~~~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEIDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEEEE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceEEEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 6899999999999999999999999999999999999999999998754
No 60
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.51 E-value=4.3e-10 Score=129.39 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceeEEeeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhhhhc--CC
Q 001670 919 NATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMT--EA 996 (1034)
Q Consensus 919 ~~~~i~~~~~~~F~~~~~~~g~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~~~~--~~ 996 (1034)
.+..+...+...|..++...++...+.+|.+. +.+.+.- +.|. ..++..|||||+.+.+|||++||+... +.
T Consensus 503 ~~~~le~~~~~~f~~l~~k~~~~~~v~id~~~--~~~~l~~---~~g~-~~~~~~lS~Ge~~~~~la~~~al~~~~~~~~ 576 (650)
T TIGR03185 503 KLQQLEEEITKSFKKLMRKHNLISRLKIDPET--FAVSLYD---NNGK-HIDKERLSAGERQILAIALLWGLAKVSGRRL 576 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccCceeEEEEcCCc--eeEEEEc---CCCC-CcCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666677777777654555667776444 4444432 1233 346788999999999999999998765 48
Q ss_pred CeeEeehhhhhh-hhHHHH-HHHHHHhhcCCCCceEEEe
Q 001670 997 PFRAMDEFDVFM-VSFYIN-YVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 997 Pf~vlDEiD~~~-~~~~~~-~~~l~~~~~~~~~~q~~~i 1033 (1034)
|| |||++-..+ ..++.. +..++.. ...|+||+
T Consensus 577 p~-iiD~p~~~lD~~~r~~l~~~~~~~----~~~QvIil 610 (650)
T TIGR03185 577 PV-IIDTPLGRLDSSHRENLVVNYFPK----ASHQVLLL 610 (650)
T ss_pred CE-EEcCCccccChHHHHHHHHHHhhc----cCCeEEEE
Confidence 88 569999999 544433 3223222 35899986
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.50 E-value=1.6e-10 Score=132.96 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEeeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhhhh------cCC
Q 001670 923 LKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEM------TEA 996 (1034)
Q Consensus 923 i~~~~~~~F~~~~~~~g~~g~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~~~------~~~ 996 (1034)
....|...+..++..++ +.+.+..++ ++...+.. .|..-.++..|||||+.+++||+.|++... .+.
T Consensus 425 ~l~~~n~~~~~~L~~l~--~~~~~~~~~-~~~~~~~~----~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~ 497 (562)
T PHA02562 425 YIPYFNKQINHYLQIME--ADYNFTLDE-EFNETIKS----RGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDT 497 (562)
T ss_pred HHHHHHHHHHHHHHHhh--eeEEEEech-hhhhHHhc----CCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34455556666666543 333333222 23333332 233333567899999999999999984222 367
Q ss_pred CeeEeehh-hhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 997 PFRAMDEF-DVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 997 Pf~vlDEi-D~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|++||||+ |++| .++...+.+|... ...++|+|
T Consensus 498 ~~lilDEp~~~~ld~~~~~~~~~~l~~~----~~~~iiii 533 (562)
T PHA02562 498 NLLILDEVFDGALDAEGTKALLSILDSL----KDTNVFVI 533 (562)
T ss_pred CeEEEecccCcccchhHHHHHHHHHHhC----CCCeEEEE
Confidence 89999999 6889 5565556656543 24577776
No 62
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.50 E-value=7.9e-14 Score=136.11 Aligned_cols=90 Identities=24% Similarity=0.307 Sum_probs=73.0
Q ss_pred eeEeEEEEEecccc-ccceeEcCCC----eEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEE
Q 001670 20 GTITRVRLENFMCH-SSLQIELGEW----VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEV 94 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~-~~~~i~f~~~----~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l 94 (1034)
|++.+|++.||++| +...|+|.++ +++|+||||||||||++||.|+|++.+....+.....+.+..+...+.|.+
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred CEEEEEEEECCcCcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 78999999999998 6778999865 999999999999999999999998777543333234567777888899999
Q ss_pred EEEecCCCCCCcccCCCeEEEEEEe
Q 001670 95 ELKNRGEDAFKPEIFGDSIIIERRI 119 (1034)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~ 119 (1034)
+|.+.+ ..+.+.|.+
T Consensus 81 ~f~~~~----------~~~~~~r~~ 95 (213)
T cd03279 81 TFQLGG----------KKYRVERSR 95 (213)
T ss_pred EEEECC----------eEEEEEEec
Confidence 998763 346777754
No 63
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.47 E-value=2.4e-13 Score=130.80 Aligned_cols=90 Identities=27% Similarity=0.381 Sum_probs=72.6
Q ss_pred EeEEEEEecccc-ccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcc-cccchhhhhhcCCceEEEEEEEEec
Q 001670 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQ-RAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 22 i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~-r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|++|++.||++| +..+++|++|+++|+||||||||||++||+|+++|...... +.....+.+..+...+.|.+.|.+.
T Consensus 1 ~~~l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 1 IDKLSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred CcEEEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 578999999995 77899999999999999999999999999999977655322 1113456788888899999999875
Q ss_pred CCCCCCcccCCCeEEEEEEee
Q 001670 100 GEDAFKPEIFGDSIIIERRIT 120 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~ 120 (1034)
. +..+++.|.+.
T Consensus 81 ~---------~~~~~v~r~~~ 92 (204)
T cd03240 81 N---------GKKYTITRSLA 92 (204)
T ss_pred C---------CCEEEEEEEhh
Confidence 2 24688888664
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.41 E-value=4.6e-06 Score=102.25 Aligned_cols=52 Identities=27% Similarity=0.372 Sum_probs=48.3
Q ss_pred ceeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCc
Q 001670 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~ 70 (1034)
.++|++|.|.||++|.+.+|+|++++++|+|+|||||||+|+||+++|++..
T Consensus 4 ~~ki~~l~l~N~~~~~~~~~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~ 55 (1486)
T PRK04863 4 RGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDL 55 (1486)
T ss_pred CceeeEEEEecccCccceEEEecCCeEEEECCCCCCHHHHHHHHHccccCCC
Confidence 4789999999999999889999999999999999999999999999996443
No 65
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.35 E-value=1.9e-12 Score=123.60 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=64.3
Q ss_pred EeEEEEEecccc-ccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCc------eEEEEE
Q 001670 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (1034)
Q Consensus 22 i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~------~a~v~l 94 (1034)
|++|.+.||++| .+..++|.+|+++|+|||||||||+++||.|+++.......|+....+++..|.. ...|.+
T Consensus 1 ~~~~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (197)
T cd03278 1 LKKLELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL 80 (197)
T ss_pred CcEEEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence 578999999999 7889999999999999999999999999999997654444566666777766653 467778
Q ss_pred EEEec
Q 001670 95 ELKNR 99 (1034)
Q Consensus 95 ~~~~~ 99 (1034)
+|.+.
T Consensus 81 vfq~~ 85 (197)
T cd03278 81 TFDNS 85 (197)
T ss_pred EEEcC
Confidence 88765
No 66
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=2.9e-06 Score=106.49 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCce-eEEeeccC----------ceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHH
Q 001670 919 NATLLKRQLTWQFNGHLGKKGISG-KININYEE----------KTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFA 987 (1034)
Q Consensus 919 ~~~~i~~~~~~~F~~~~~~~g~~g-~~~~~~~~----------~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall 987 (1034)
....|+..+..+|...|. |-.- .+.+.++. ...++.+.++.+ ...+.....||||++.++.|.+.
T Consensus 1138 ~~~~~n~~~~~~w~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lS~Gq~~~~~~~~r 1213 (1311)
T TIGR00606 1138 KMEEINKIIRDLWRSTYR--GQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKG--DTALDMRGRCSAGQKVLASLIIR 1213 (1311)
T ss_pred HHHHHHHHHHHHHHHHcC--ccHHHHhhcCCCCChHHHHHHHcCchHHHhccCCC--CeecCCCCCCchhhhhHhhHhHH
Confidence 456677777778877765 1110 23331111 011222333322 12343446899999997777777
Q ss_pred HHhhh--hcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc---CCCCceEEEe
Q 001670 988 LALHE--MTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG---YVPCNFFYLV 1033 (1034)
Q Consensus 988 ~al~~--~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~---~~~~~q~~~i 1033 (1034)
+||.. +.++|+++|||+-++| .+.......|..... ...+.++|+|
T Consensus 1214 lala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viii 1266 (1311)
T TIGR00606 1214 LALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVI 1266 (1311)
T ss_pred HHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEE
Confidence 66654 3568999999999999 555554455555432 1235577776
No 67
>PRK03918 chromosome segregation protein; Provisional
Probab=99.32 E-value=1.4e-05 Score=98.03 Aligned_cols=64 Identities=27% Similarity=0.195 Sum_probs=48.5
Q ss_pred ccCCCCCCcccchHHHHHHHHHhhh--hcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 968 VRDTRGLSGGERSFSTLCFALALHE--MTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 968 ~~~~~~lSGGEks~~~lall~al~~--~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..++..||||++.+++||+.+||.. +.++||+||||+.++| .++.....+|..++. ...|+|+|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~--~~~~iiii 850 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR--KIPQVIIV 850 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh--cCCEEEEE
Confidence 3456789999999999998877654 4678999999999999 555555566655443 24678876
No 68
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.27 E-value=1e-11 Score=120.03 Aligned_cols=78 Identities=33% Similarity=0.502 Sum_probs=61.1
Q ss_pred eeEeEEEEEecccccccee--EcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCC-----ceEEE
Q 001670 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC-----SYAMV 92 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~-----~~a~v 92 (1034)
|.|++|++.||++|....+ .+++.+++|+|||||||||++++|.|++|.... ..|...+..++..+. +.+.|
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRAS-KMRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHH-HhhhhhHHHHhcCCCCCCCCceEEE
Confidence 7899999999999976555 577789999999999999999999999986643 234445666665543 35677
Q ss_pred EEEEEe
Q 001670 93 EVELKN 98 (1034)
Q Consensus 93 ~l~~~~ 98 (1034)
...|..
T Consensus 80 ~~~~~~ 85 (212)
T cd03274 80 EVHFQE 85 (212)
T ss_pred EEEEEe
Confidence 777765
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.23 E-value=4.7e-05 Score=94.49 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001670 636 SYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSF 704 (1034)
Q Consensus 636 ~~~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 704 (1034)
.+..++..++..+..+.....+++..+......+..+..++......+......+..+..+...++.++
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 672 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEI 672 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345555556666666655555555555555555555555555555555555555555555544444443
No 70
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.20 E-value=1.3e-11 Score=122.17 Aligned_cols=59 Identities=29% Similarity=0.359 Sum_probs=49.8
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..||||||++++|||+||++.+.|+|||||||||++| .|+.....+|.+.+ ...|||+|
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~---~~~Q~ii~ 195 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS---KQSQFIIT 195 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT---TTSEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccc
Confidence 4799999999999999999999999999999999999 78888888887653 45899987
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.20 E-value=4.7e-05 Score=91.92 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchhH
Q 001670 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDE 718 (1034)
Q Consensus 639 ~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 718 (1034)
.+.......++++...+..++..+.-++..+..+..++.....++..++.+...+..+...+...+.+ .-..++..
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~----~d~~~~~k 1311 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKD----SDKNDYEK 1311 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444332 01234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 719 ISQEISNIQEEIQEKEIILEKLQFSMNEAE 748 (1034)
Q Consensus 719 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 748 (1034)
+...+..+..++...+..+.++...+..+.
T Consensus 1312 L~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1312 LKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444444444433
No 72
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=99.10 E-value=3.2e-09 Score=108.98 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=59.1
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhc-C-----CceEEEE
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-G-----CSYAMVE 93 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~-g-----~~~a~v~ 93 (1034)
|+|.+|.|.||+++....|.|++ +|+++|+|++||||+++||+++||.... .+.=...||-.. + ...-.|.
T Consensus 1 M~l~~i~i~~FRgi~~~~~~l~~-~t~liG~N~~GKss~l~Al~~~l~~~~~--~~~f~~~DFh~~~~~~~~~~~~i~i~ 77 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSLPLDD-NTVLIGENNWGKSSLLDALSLLLSPSRR--LYQFTESDFHVPPGEEHDQERHIQIV 77 (373)
T ss_pred CeEEEEEEeccCccceEEEEecC-ceEEEcCCCccHhHHHHHHHHHhCCCcc--ccccCHHHhCCCcccccccCceEEEE
Confidence 89999999999999999999996 8999999999999999999999997643 222233455321 1 2245566
Q ss_pred EEEEec
Q 001670 94 VELKNR 99 (1034)
Q Consensus 94 l~~~~~ 99 (1034)
++|...
T Consensus 78 ~~F~e~ 83 (373)
T PF11398_consen 78 LTFCES 83 (373)
T ss_pred EEecCC
Confidence 677644
No 73
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=99.08 E-value=5.1e-11 Score=114.60 Aligned_cols=49 Identities=37% Similarity=0.627 Sum_probs=46.3
Q ss_pred eeEeEEEEEeccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcCC
Q 001670 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGC 68 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg~ 68 (1034)
|+|.+|.|.||+||.+.+|.|+++ .|+|+|||||||||++|||+-||..
T Consensus 1 mrLrkiSl~nfr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~ 50 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNK 50 (440)
T ss_pred CccchhhhhhhhhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHh
Confidence 688999999999999999999998 9999999999999999999999953
No 74
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.99 E-value=4.6e-10 Score=104.00 Aligned_cols=69 Identities=39% Similarity=0.585 Sum_probs=53.4
Q ss_pred EEEEEecccc-ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcCCCcCCcccccchhhhhhcCCceEEEEEEE
Q 001670 24 RVRLENFMCH-SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (1034)
Q Consensus 24 ~i~l~nf~~~-~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~ 96 (1034)
+|.+.||++| .+.+|.|.++ +++|+|||||||||++++|.|+++.......|. +.+..|...+.++++|
T Consensus 1 ~i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~ 71 (162)
T cd03227 1 KIVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR----SGVKAGCIVAAVSAEL 71 (162)
T ss_pred CceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc----CcccCCCcceeeEEEE
Confidence 3678899997 7788987654 999999999999999999999998877665552 2335565566666554
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.95 E-value=3.8e-05 Score=86.91 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 850 EQLSAQVNRLNQRLKHESHQYSESIEDLRMLYEEKEHKILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKRQLTW 929 (1034)
Q Consensus 850 ~~l~~~l~~l~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~i~~~~~~ 929 (1034)
..+..++..+...+.. ..-....+..+|+.+...+..+..+..++......+...+.. ...|+..|..|+..|..
T Consensus 451 ~~~~~~i~~l~~~L~~----g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~nRfr~~~~~V~~~f~~ 525 (569)
T PRK04778 451 FEVSDEIEALAEELEE----KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-ANRYRSDNEEVAEALNE 525 (569)
T ss_pred HHHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHHH
Confidence 3444555555554443 122345566688888888888888888888888777776665 45677778888777765
Q ss_pred H
Q 001670 930 Q 930 (1034)
Q Consensus 930 ~ 930 (1034)
.
T Consensus 526 A 526 (569)
T PRK04778 526 A 526 (569)
T ss_pred H
Confidence 3
No 76
>PRK01156 chromosome segregation protein; Provisional
Probab=98.86 E-value=0.00097 Score=81.56 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=47.9
Q ss_pred ccCCCCCCcccchHHHHHHHHHhhhh--cCCCeeEeehhhhhh-h-hHHHHHHHHHHhhcCCC-CceEEEe
Q 001670 968 VRDTRGLSGGERSFSTLCFALALHEM--TEAPFRAMDEFDVFM-V-SFYINYVFSIDFSGYVP-CNFFYLV 1033 (1034)
Q Consensus 968 ~~~~~~lSGGEks~~~lall~al~~~--~~~Pf~vlDEiD~~~-~-~~~~~~~~l~~~~~~~~-~~q~~~i 1033 (1034)
..++..||||++.+++||+.+||..+ .++||++|||+.++| . ++...+.+|...+...+ .+|+|+|
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~i 866 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMI 866 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 34567799999999999998888654 578999999999999 4 44444444433333333 4688887
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.84 E-value=1.2e-05 Score=79.28 Aligned_cols=88 Identities=18% Similarity=0.315 Sum_probs=41.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001670 713 ASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESE 792 (1034)
Q Consensus 713 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1034)
...+......+..+....+.....+..+..+.......+..+..++.............+......+..+...+..+..+
T Consensus 56 eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR 135 (237)
T PF00261_consen 56 EERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEER 135 (237)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 001670 793 KAHYEDVM 800 (1034)
Q Consensus 793 ~~~~~~~~ 800 (1034)
...+...+
T Consensus 136 ~e~~E~ki 143 (237)
T PF00261_consen 136 AEAAESKI 143 (237)
T ss_dssp HHHHHHHH
T ss_pred HhhhchhH
Confidence 43333333
No 78
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.74 E-value=4.9e-05 Score=74.94 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001670 387 CEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEI 438 (1034)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l 438 (1034)
..+..+...+.............+..+...+..+...+...+.....+...+
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444444444444443
No 79
>PF13166 AAA_13: AAA domain
Probab=98.73 E-value=0.00018 Score=85.85 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=33.9
Q ss_pred eccccc--cceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCc
Q 001670 29 NFMCHS--SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (1034)
Q Consensus 29 nf~~~~--~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~ 70 (1034)
||++|+ +..+++.+++|+|+|.|||||||+...|.-+-+++.
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsGKStlsr~l~~~~~~~~ 44 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSGKSTLSRILKSLCRGRG 44 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 788885 456776778999999999999999999987544443
No 80
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.60 E-value=0.0028 Score=71.83 Aligned_cols=6 Identities=50% Similarity=0.606 Sum_probs=2.3
Q ss_pred CccccC
Q 001670 3 DYRFSS 8 (1034)
Q Consensus 3 ~~~~~~ 8 (1034)
||+|-|
T Consensus 897 dP~lg~ 902 (1758)
T KOG0994|consen 897 DPRLGS 902 (1758)
T ss_pred CcccCC
Confidence 333333
No 81
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=0.0011 Score=67.01 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=37.9
Q ss_pred eeEeEEEEEe-ccccccceeEcCCCeEEEEc-----------CCCCCHHHHHHHHHHHcCCCcC
Q 001670 20 GTITRVRLEN-FMCHSSLQIELGEWVNFITG-----------QNGSGKSAILTALCIAFGCRAK 71 (1034)
Q Consensus 20 ~~i~~i~l~n-f~~~~~~~i~f~~~~~~I~G-----------~NGsGKSti~~ai~~~Lg~~~~ 71 (1034)
|.+.+.-..| --+|. ++.|.||+|+|.| .||-||||++..|.||||++-.
T Consensus 4 mi~~~~~~cN~q~vfk--~vkFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ti~ 65 (591)
T COG5293 4 MIKLSKLYCNHQQVFK--PVKFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGSTID 65 (591)
T ss_pred eeeehheeeccccccc--eeeeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhccccc
Confidence 4444444444 12222 5689999999998 5999999999999999998776
No 82
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.58 E-value=3.1e-08 Score=100.91 Aligned_cols=47 Identities=38% Similarity=0.642 Sum_probs=41.8
Q ss_pred eEeEEEEEeccccccceeE-cCCCeEEEEcCCCCCHHHHHHHHHHHcCC
Q 001670 21 TITRVRLENFMCHSSLQIE-LGEWVNFITGQNGSGKSAILTALCIAFGC 68 (1034)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~-f~~~~~~I~G~NGsGKSti~~ai~~~Lg~ 68 (1034)
+|+++++.||+||....+. |. ++|+|+|+|||||||+++||.+..|-
T Consensus 1 MI~~~~IkNFkSf~e~~~~~~~-~in~I~G~N~sGKSNlleAl~f~~~~ 48 (371)
T COG1106 1 MIKSFKIKNFKSFRELELEDFG-KINIIYGANGAGKSNLLEALYFLKGL 48 (371)
T ss_pred CceEEEecccccHHHhhhcccc-ceEEEEcCCCCchhHHHHHHHHHHHh
Confidence 4899999999999888775 76 59999999999999999999987653
No 83
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=2.3e-08 Score=95.83 Aligned_cols=45 Identities=33% Similarity=0.557 Sum_probs=41.5
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHH
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
|+|.+|.+.||++|....++.. ++|+|+|.||+||||+++|+.++
T Consensus 1 ~~l~si~vknyRs~r~l~lei~-~~nviIGANGaGKSn~~~~l~~l 45 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDLEIR-RVNVIIGANGAGKSNFYDALRLL 45 (373)
T ss_pred CccchhhhhcchhHHhcccccc-ceEEEEcCCCCchhHHHHHHHHH
Confidence 6799999999999999888777 69999999999999999999874
No 84
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.57 E-value=4.9e-08 Score=105.13 Aligned_cols=50 Identities=34% Similarity=0.523 Sum_probs=48.4
Q ss_pred eeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCC
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCR 69 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~ 69 (1034)
|+|.+|+|.||+||..+++.|+.|+|+|+|+|-+|||||+|||+.+|...
T Consensus 1 M~L~~v~I~nFR~i~~lsl~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~ 50 (581)
T COG3593 1 MHLERVKIKNFRGINRLSLEFEEGLNVLIGENNSGKSSLLDALRLLLDPE 50 (581)
T ss_pred CcceeEEecccceeeeeeeeecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence 89999999999999999999999999999999999999999999999875
No 85
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.56 E-value=8.6e-08 Score=85.34 Aligned_cols=49 Identities=29% Similarity=0.444 Sum_probs=45.0
Q ss_pred CceeEeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 18 ~~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
..+++.++.|.||..|-..+++|+.-+|.+.|.||+||||+|.|+..+|
T Consensus 3 ~r~k~~SLtlVNwNG~fartfdLd~lvTtL~G~NGAGKsT~m~Af~taL 51 (227)
T PF04310_consen 3 ERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITAL 51 (227)
T ss_dssp -B-EEEEEEEECETTECEEEEEHHCCCCCCCCSTTCCHHHHHHHHHHHH
T ss_pred cccccceEEEEeecCeeeeEeehhhheEeeecCCCCcchhhHHHHHHHh
Confidence 3589999999999999888999999999999999999999999999988
No 86
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.55 E-value=0.0069 Score=74.15 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001670 739 KLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVM 800 (1034)
Q Consensus 739 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1034)
.++.++..+...+..+...+..+.....-+...+..+...+..++.+...+..+...+...+
T Consensus 658 ~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i 719 (1822)
T KOG4674|consen 658 KLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTI 719 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555554444444444445555555555555555555554444444444
No 87
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.55 E-value=0.004 Score=71.13 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 882 EEKEHKILRKQQTYQAFREKVRACRE 907 (1034)
Q Consensus 882 ~~~~~~~~~l~~~~~~l~~~i~~l~~ 907 (1034)
+.+...+..+..........|..|..
T Consensus 572 ERLl~~L~~~E~EK~~ke~ki~~Lek 597 (775)
T PF10174_consen 572 ERLLDILREAENEKNDKEKKIGELEK 597 (775)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333333333333344443333
No 88
>PF13175 AAA_15: AAA ATPase domain
Probab=98.53 E-value=7.6e-08 Score=107.12 Aligned_cols=49 Identities=35% Similarity=0.561 Sum_probs=44.4
Q ss_pred EeEEEEEeccccccc-eeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCc
Q 001670 22 ITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~-~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~ 70 (1034)
|++|.+.||++|+.. .|+|++++|+|+|.||||||||++||...+.+..
T Consensus 1 ik~i~IkNfR~i~~~~~i~~~~~itiiiG~N~sGKT~IL~aL~~~~~~~~ 50 (415)
T PF13175_consen 1 IKKIRIKNFRSIKDSGEINFDEDITIIIGENNSGKTNILEALDLFFNGKF 50 (415)
T ss_pred CcEEEEecccccCccceeecCCceEEEEccCCCCHHHHHHHHHHhcCccc
Confidence 679999999999988 9999999999999999999999999976665444
No 89
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=1.8e-07 Score=82.47 Aligned_cols=36 Identities=44% Similarity=0.768 Sum_probs=31.8
Q ss_pred eeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCC
Q 001670 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72 (1034)
Q Consensus 37 ~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~ 72 (1034)
.++|.+.+|+|+|.||||||||++||..++|-.+..
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aG 67 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAG 67 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhccccccC
Confidence 578989999999999999999999999988765553
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.44 E-value=0.0036 Score=67.25 Aligned_cols=49 Identities=8% Similarity=0.178 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSA 686 (1034)
Q Consensus 638 ~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l 686 (1034)
+.++.....+...+......++.+...++.++..++.++...+.....+
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333333333
No 91
>PF13166 AAA_13: AAA domain
Probab=98.43 E-value=0.00048 Score=82.15 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhcCCce-eEEeeccCceeEEEEecCCCCCCCcccCCCCCCcccchHHHHHHHHHhhh--h---cCCCeeE
Q 001670 927 LTWQFNGHLGKKGISG-KININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHE--M---TEAPFRA 1000 (1034)
Q Consensus 927 ~~~~F~~~~~~~g~~g-~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~~lSGGEks~~~lall~al~~--~---~~~Pf~v 1000 (1034)
+...|...|..+|+.+ .+.+.....+..|... ++. .....||-|||+.+|+|+-||... . ...+++|
T Consensus 460 ~~~~iN~~L~~~g~~~~~l~~~~~~~~y~l~~~--~~~-----~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiV 532 (712)
T PF13166_consen 460 AADRINEELKRLGFSNFSLEIVDDDKGYKLQRK--GGS-----KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIV 532 (712)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCeEEEEEC--CCC-----cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEE
Confidence 4445555666555544 4444434444444332 111 123679999999999999998765 1 2457899
Q ss_pred eehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 1001 MDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 1001 lDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
||-+=.-| .++..+..+|.+........|+||-
T Consensus 533 iDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIl 567 (712)
T PF13166_consen 533 IDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIIL 567 (712)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEE
Confidence 88877777 7777777778777522457898873
No 92
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.39 E-value=0.0059 Score=65.62 Aligned_cols=14 Identities=7% Similarity=-0.204 Sum_probs=6.7
Q ss_pred cCCCeeEeehhhhh
Q 001670 994 TEAPFRAMDEFDVF 1007 (1034)
Q Consensus 994 ~~~Pf~vlDEiD~~ 1007 (1034)
.|.|-|-|||=+..
T Consensus 498 ~~l~~~~l~~~~~~ 511 (546)
T PF07888_consen 498 QPLGHYSLCEQGQP 511 (546)
T ss_pred CCCCCcCcccCCCC
Confidence 34444555554443
No 93
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.32 E-value=0.03 Score=70.58 Aligned_cols=58 Identities=16% Similarity=-0.003 Sum_probs=44.0
Q ss_pred CCCCCcccchHHHHHHHHH----hhh----hcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALA----LHE----MTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~a----l~~----~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..||||||.+++...+|| .|. ..+.++++|||+-+++ .++...+.++..+ ..||||+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l-----~~~~i~~ 1312 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL-----DLDFVMT 1312 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh-----CCCEEEE
Confidence 6789999999998665655 233 1234589999999999 7888888877665 4678876
No 94
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=98.28 E-value=2.7e-06 Score=74.63 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=84.3
Q ss_pred CCccccccceeccCCCChHHHHHHHHhccccceeecchhhHHHHHHHHHHhCCCCccEEEeecCCCCCCCCCCCC--CCC
Q 001670 474 PPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHML--PHT 551 (1034)
Q Consensus 474 ~~~g~~~~~i~~~~~~~~~~aie~~l~~~l~~~vv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 551 (1034)
+++|++++++.+ + ++|..|++.++|+.+.++||++..++..+.+.++....++.++++++............. ++.
T Consensus 3 gv~G~l~dli~v-~-~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~ 80 (120)
T PF06470_consen 3 GVLGRLADLIEV-D-PKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPG 80 (120)
T ss_dssp TEEEEGGGSEEE-S-GGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTT
T ss_pred CeeeeHHhceec-C-HHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCc
Confidence 468999999999 6 899999999999999999999999999999999887788889998875432211111100 224
Q ss_pred CCCccccceecCcHHHHHHhhccCCccEEEEeCChHHHHHH
Q 001670 552 KHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAV 592 (1034)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 592 (1034)
...++++.+.+.++.+..++. .-++++++|++++.|..+
T Consensus 81 ~~~~l~d~i~~~d~~~~~~~~--~llg~~~vv~~l~~A~~l 119 (120)
T PF06470_consen 81 GAGPLIDLIEFPDEEYRPALE--FLLGDVVVVDDLEEARKL 119 (120)
T ss_dssp SEEEGGGGEEESCGGGHHHHH--HHHTTEEEESSHHHHHHH
T ss_pred chHHHHHhcccCcHHHHHHHH--HHcCCEEEECCHHHHHHh
Confidence 566788888884433333222 124679999999998765
No 95
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.24 E-value=0.012 Score=66.91 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=31.9
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001670 176 KDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRN 232 (1034)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~ 232 (1034)
.++|+++.....+..+...+..+...+..+...+.++...-..-...+..++.....
T Consensus 95 ~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~ 151 (569)
T PRK04778 95 NDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRE 151 (569)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666677766666666666666654444444444444444333
No 96
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.19 E-value=0.02 Score=63.57 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=7.2
Q ss_pred CCCcccchHHHH
Q 001670 973 GLSGGERSFSTL 984 (1034)
Q Consensus 973 ~lSGGEks~~~l 984 (1034)
.-+|-+-+|.+=
T Consensus 657 ghageqyaf~ar 668 (1243)
T KOG0971|consen 657 GHAGEQYAFAAR 668 (1243)
T ss_pred cchhHHHHHHHH
Confidence 346666666553
No 97
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.16 E-value=6.9e-07 Score=79.43 Aligned_cols=40 Identities=20% Similarity=0.461 Sum_probs=31.6
Q ss_pred EEEEEeccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 24 RVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 24 ~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
++.+-||+...+.++..+|| +.+|+||||+||||++|+|+
T Consensus 12 sVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 12 SVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred EEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence 34445666667777777774 89999999999999999985
No 98
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.15 E-value=0.0098 Score=64.01 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001670 203 NKGDALVLELEATIKPTEKELSELQRKI 230 (1034)
Q Consensus 203 ~~~~~~l~~~~~~~~~l~~~~~~l~~~~ 230 (1034)
..+.+.+...-..+..|+.+...|..++
T Consensus 45 ~~LNDRLA~YIekVR~LEaqN~~L~~di 72 (546)
T KOG0977|consen 45 QELNDRLAVYIEKVRFLEAQNRKLEHDI 72 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 99
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.11 E-value=3.4e-06 Score=76.43 Aligned_cols=44 Identities=30% Similarity=0.335 Sum_probs=34.4
Q ss_pred EEEEEeccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 24 RVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 24 ~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
++.+.|=+-.++.++++.|| +++|+||||+||||++.+++--|.
T Consensus 8 s~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 8 SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 34455544457778888775 899999999999999999986554
No 100
>PRK11637 AmiB activator; Provisional
Probab=98.11 E-value=0.0031 Score=69.15 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 260 RQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKT 311 (1034)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (1034)
.++..+..++..+..++......+.....++..++.++..++.++..++..+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444443333333333
No 101
>PRK11637 AmiB activator; Provisional
Probab=98.09 E-value=0.005 Score=67.60 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001670 217 KPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDC 296 (1034)
Q Consensus 217 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1034)
..++.+++.++.+++.. ..++..+...+. ....++..+..++..+...+...+..+..++.++..++.+
T Consensus 43 ~~~~~~l~~l~~qi~~~------~~~i~~~~~~~~-----~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAK------EKSVRQQQQQRA-----SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHH------HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666665555443 223333332222 3334444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 001670 297 FMKKKAEIAVMVEKT 311 (1034)
Q Consensus 297 ~~~~~~~l~~~~~~~ 311 (1034)
+..++..+......+
T Consensus 112 I~~~q~~l~~~~~~l 126 (428)
T PRK11637 112 IAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 102
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.03 E-value=0.017 Score=56.55 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001670 886 HKILRKQQTYQAFREKV 902 (1034)
Q Consensus 886 ~~~~~l~~~~~~l~~~i 902 (1034)
..+..+...+.++...|
T Consensus 228 ee~~~~~~elre~~k~i 244 (294)
T COG1340 228 EEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 103
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=4.8e-06 Score=78.46 Aligned_cols=45 Identities=29% Similarity=0.414 Sum_probs=41.4
Q ss_pred EeEEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
|.+++|.||+||.+..|.+.| +|+.+|||-|||||.+.+|...+-
T Consensus 2 i~sl~l~nfk~y~n~~i~l~~-ltVF~G~NssGKSt~iqsl~li~s 46 (374)
T COG4938 2 ILSLSLKNFKPYINGKIILKP-LTVFIGPNSSGKSTTIQSLYLIYS 46 (374)
T ss_pred cceeeecCccceecceEEEec-ceEEEcCCCCchhHHHHHHHHHHH
Confidence 789999999999999999996 999999999999999999987664
No 104
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.99 E-value=0.055 Score=61.31 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhcCCCCCCCHHHHHHHHHHH
Q 001670 780 MEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRL 859 (1034)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 859 (1034)
..+...+..+......+...+ ..+...-..++..+..+...+......+.... + |.-++.+...+...
T Consensus 382 ~~~~~~l~~ie~~q~~~~~~l-~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n-------L----PGlp~~y~~~~~~~ 449 (560)
T PF06160_consen 382 EEIEEQLEEIEEEQEEINESL-QSLRKDEKEAREKLQKLKQKLREIKRRLEKSN-------L----PGLPEDYLDYFFDV 449 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------C----CCCCHHHHHHHHHH
Confidence 333333333333333333333 34444444444555555555555444433211 1 22333333344444
Q ss_pred HHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 860 NQRLKHESHQ---YSESIEDLRMLYEEKEHKILRKQQTYQAFRE 900 (1034)
Q Consensus 860 ~~~l~~~~~~---~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~ 900 (1034)
...+..+... ..-..+.+...+..+...+..+......+-.
T Consensus 450 ~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~ 493 (560)
T PF06160_consen 450 SDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELID 493 (560)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333222 1223455555555555555555544444433
No 105
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.99 E-value=1.1e-05 Score=77.26 Aligned_cols=65 Identities=48% Similarity=0.776 Sum_probs=51.5
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..+..||||||.+++||..+++|.+.++||++|||+.++| .++...+.+|.+.....+..++|+|
T Consensus 105 ~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii 171 (198)
T cd03276 105 RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI 171 (198)
T ss_pred CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3567899999999999999999999999999999999999 6777777777775433223344443
No 106
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.97 E-value=0.019 Score=61.87 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=4.6
Q ss_pred CCeeEeehhhh
Q 001670 996 APFRAMDEFDV 1006 (1034)
Q Consensus 996 ~Pf~vlDEiD~ 1006 (1034)
.|-+...|+|.
T Consensus 436 ~g~v~i~e~d~ 446 (546)
T KOG0977|consen 436 KGNVAIHECDP 446 (546)
T ss_pred CCCcceeeccc
Confidence 33344444443
No 107
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=8.9e-06 Score=72.74 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=28.6
Q ss_pred cceeEcCC-CeEEEEcCCCCCHHHHHHHHHHHcCCCc
Q 001670 35 SLQIELGE-WVNFITGQNGSGKSAILTALCIAFGCRA 70 (1034)
Q Consensus 35 ~~~i~f~~-~~~~I~G~NGsGKSti~~ai~~~Lg~~~ 70 (1034)
+..++|++ ++|.|+||||+||||++..+.-.+...+
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~ 55 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS 55 (252)
T ss_pred cceeeecCCceeEEECCCCccHHHHHHHHHHhccccC
Confidence 34556654 7999999999999999999988775433
No 108
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.94 E-value=1.4e-05 Score=77.53 Aligned_cols=33 Identities=33% Similarity=0.444 Sum_probs=26.6
Q ss_pred cceeEcCC-CeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 35 SLQIELGE-WVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 35 ~~~i~f~~-~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
+..+.+.+ .+++|+|||||||||++.+|.-.|-
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34445544 6999999999999999999987774
No 109
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.93 E-value=0.077 Score=60.88 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001670 655 AQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSF 704 (1034)
Q Consensus 655 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 704 (1034)
+..+...+...+..+..++.+....+..+......+..+...++.|+.+.
T Consensus 1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444444444433
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.92 E-value=0.024 Score=64.77 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001670 406 LSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIREL 441 (1034)
Q Consensus 406 l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l 441 (1034)
|-..+.+.+.+++-+...+..-..++..|+.++..+
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444454544444443
No 111
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.92 E-value=2.4e-05 Score=75.90 Aligned_cols=64 Identities=31% Similarity=0.487 Sum_probs=52.7
Q ss_pred CCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 970 ~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
++..|||||+.++.++.++|++.+.+.|+++|||+.++| .++...+.+|...++..+..++|+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viii 188 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLI 188 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 457899999999999999999888999999999999999 6777777777776554344577776
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.91 E-value=0.0075 Score=68.81 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001670 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKN 702 (1034)
Q Consensus 640 ~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 702 (1034)
.+..|+.+++.++.++...+..-++++.++..+...-..++.++..++.+...++.++..|..
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666655544443344445555555555555444444443
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.062 Score=58.83 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.7
Q ss_pred CCCCcc
Q 001670 972 RGLSGG 977 (1034)
Q Consensus 972 ~~lSGG 977 (1034)
+.|++|
T Consensus 1037 KvL~~~ 1042 (1118)
T KOG1029|consen 1037 KVLEPG 1042 (1118)
T ss_pred hhccCC
Confidence 444444
No 114
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.88 E-value=3.4e-05 Score=90.52 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001670 849 PEQLSAQVNRLNQRLK 864 (1034)
Q Consensus 849 ~~~l~~~l~~l~~~l~ 864 (1034)
++.|+.+...+..++.
T Consensus 568 l~~L~~En~~L~~~l~ 583 (722)
T PF05557_consen 568 LEALQAENEDLLARLR 583 (722)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 115
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.86 E-value=0.013 Score=56.04 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcch
Q 001670 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAV 716 (1034)
Q Consensus 637 ~~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 716 (1034)
+..++..+...+......+..+...+..+...+..++.++..++.+...++.++..+..++...+..+.. ......+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~---v~~~~e~ 91 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA---VKDEREL 91 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHH
Confidence 3344444455555555555555555555555555555555555555555555555555555555554422 0012233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 717 DEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKL 756 (1034)
Q Consensus 717 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 756 (1034)
..|..++..+..++..++.++..+...+..+...+..+..
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333333333
No 116
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.80 E-value=3.9e-05 Score=72.00 Aligned_cols=58 Identities=29% Similarity=0.464 Sum_probs=48.3
Q ss_pred CCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 974 lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|||||+.+++||..++.+.+.+.|+++|||++++| .++...+.+|.+.+. . ..++|+|
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~-g~tiIii 154 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-H-TSQFIVI 154 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEE
Confidence 89999999999999998888889999999999999 667777777766543 2 4577776
No 117
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.80 E-value=0.056 Score=60.51 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQ 698 (1034)
Q Consensus 640 ~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 698 (1034)
....-+.++..++.+++.+...+..+...+..+...+..+..++.........++.++.
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555444444443
No 118
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.80 E-value=0.013 Score=56.00 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001670 427 YDKKCREIRSEIRELQQ 443 (1034)
Q Consensus 427 ~~~~~~~l~~~l~~l~~ 443 (1034)
+..+...+..+...|..
T Consensus 154 i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 154 IREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444433
No 119
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.77 E-value=4e-05 Score=77.85 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=36.3
Q ss_pred CCCceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 16 RSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 16 ~~~~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.++...+..|... +...+.+..+.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4455666666653 112245666777775 89999999999999999997543
No 120
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.77 E-value=0.053 Score=54.07 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=5.5
Q ss_pred HHhhcCCCcCC
Q 001670 146 LIDHFNIDVEN 156 (1034)
Q Consensus 146 ~~~~~~i~~~~ 156 (1034)
.+..||+-+.+
T Consensus 31 rLrlF~LRPkq 41 (499)
T COG4372 31 RLRLFGLRPKQ 41 (499)
T ss_pred HHhHhccCccc
Confidence 44455555444
No 121
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.5e-05 Score=69.68 Aligned_cols=34 Identities=35% Similarity=0.447 Sum_probs=28.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
|.+..|.|.|| ...|+|||||||||++..|.-.+
T Consensus 18 f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc
Confidence 56677778775 78899999999999999987655
No 122
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.76 E-value=2.4e-05 Score=75.48 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=24.3
Q ss_pred ceeEcCC-CeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 36 LQIELGE-WVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 36 ~~i~f~~-~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.++.+.+ .++.|+||||||||||+.+|.-.+
T Consensus 23 i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555 589999999999999999986544
No 123
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.74 E-value=0.13 Score=57.68 Aligned_cols=54 Identities=7% Similarity=0.163 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRM 691 (1034)
Q Consensus 638 ~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 691 (1034)
..++.+++.++..+..++..+...+..+...+..+..++.........++.++.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666655555555555555555555554444
No 124
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.70 E-value=3.4e-05 Score=71.75 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=25.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTAL 62 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai 62 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 45667777775 8899999999999999987
No 125
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.70 E-value=5.1e-05 Score=72.27 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=34.1
Q ss_pred eeEeEEEEEeccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+... | -+.+.++.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 5 l~~~~l~~~-~-~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 5 LEVRGLSVK-G-AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEeccEEE-e-eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455555543 2 457778888776 88999999999999999987544
No 126
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.69 E-value=6.1e-05 Score=68.09 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 45667777775 788999999999999999844
No 127
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=6.5e-05 Score=76.20 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=33.6
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+..+..|.+. +-..+.+..+.|.|| +.+|+|||||||||++.+|.-.+
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3445555543 111245667778876 89999999999999999997543
No 128
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.65 E-value=8.1e-05 Score=74.23 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=32.9
Q ss_pred ceeEeEEEEE--e----ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 19 AGTITRVRLE--N----FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 19 ~~~i~~i~l~--n----f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+..+..|.+. + ...+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4556666543 1 01345566777664 8999999999999999999643
No 129
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.65 E-value=6.8e-05 Score=76.30 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCCCCceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 14 PQRSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 14 ~~~~~~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+....+..+..|... +...+.+..+.|.+| +.+|+||||||||||+.+|.-.
T Consensus 8 ~~~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred cCCCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 334444455555443 111235556677665 8899999999999999999643
No 130
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=8.1e-05 Score=72.53 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=27.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.+| +.+|+|||||||||++..|.-.+
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35667777776 89999999999999999886443
No 131
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.64 E-value=0.00058 Score=79.55 Aligned_cols=30 Identities=33% Similarity=0.405 Sum_probs=24.6
Q ss_pred ceeEcCC--CeEEEEcCCCCCHHHHHHHHHHH
Q 001670 36 LQIELGE--WVNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 36 ~~i~f~~--~~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
.+|.+++ .+.+|+||||+||||++..|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 4566654 48899999999999999999754
No 132
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=9.7e-05 Score=75.57 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=36.7
Q ss_pred CCCCceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 15 QRSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 15 ~~~~~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+..++..+..|.+. +..-+.+..+.+.+| +.+|+||||||||||+.+|.-.+
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 55556666666654 111245666777775 88899999999999999986433
No 133
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=5.5e-05 Score=74.36 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=27.9
Q ss_pred cccceeEcCCCeEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEWVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+|+.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHhC
Confidence 46667788889999999999999999999974
No 134
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.63 E-value=7.6e-05 Score=75.35 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=26.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45566777776 899999999999999999863
No 135
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0001 Score=68.37 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=23.6
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+.+.+| +.+|.|||||||||+.-+|.
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~ 51 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIM 51 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4455566554 88999999999999988774
No 136
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=7.7e-05 Score=69.13 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=27.9
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.|| +++|+|||||||||++++|...+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566777774 89999999999999999997654
No 137
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.61 E-value=9.4e-05 Score=72.19 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.+| +.+|+|||||||||++..|.-.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566677665 8899999999999999998643
No 138
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.15 Score=54.64 Aligned_cols=8 Identities=0% Similarity=-0.043 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 001670 517 LRGCAREA 524 (1034)
Q Consensus 517 l~~~l~~~ 524 (1034)
+..+++..
T Consensus 130 V~~ilK~L 137 (581)
T KOG0995|consen 130 VVQILKNL 137 (581)
T ss_pred HHHHHHhC
Confidence 34455543
No 139
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.61 E-value=9e-05 Score=73.09 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=26.9
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.|| +.+|+|||||||||++.+|.-
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667777775 889999999999999999963
No 140
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.60 E-value=4.4e-05 Score=69.03 Aligned_cols=32 Identities=38% Similarity=0.530 Sum_probs=24.9
Q ss_pred cceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 35 SLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+..+.|.+| +.+|+||||||||||+.+|.-.+
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 345566554 89999999999999999875443
No 141
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.60 E-value=9.6e-05 Score=72.89 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45566777775 889999999999999999863
No 142
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=9.4e-05 Score=74.27 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=26.1
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 18 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556677665 889999999999999999964
No 143
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.58 E-value=7.3e-05 Score=68.62 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=23.3
Q ss_pred ceeEcCC-CeEEEEcCCCCCHHHHHHHHHH
Q 001670 36 LQIELGE-WVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 36 ~~i~f~~-~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
..+.+.+ .+.+|+||+||||||++.+|-.
T Consensus 21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3445544 4889999999999999999865
No 144
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00011 Score=74.35 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=26.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45566777775 889999999999999999873
No 145
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.58 E-value=0.021 Score=50.60 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 659 RKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQ 698 (1034)
Q Consensus 659 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 698 (1034)
+.++..+.........+|..+......++.++..+...+.
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 146
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.58 E-value=0.00013 Score=74.22 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=34.9
Q ss_pred ceeEeEEEEEeccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+.+..+.+.+-.-+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 39 ~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred eEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3667777665433346677777776 889999999999999999853
No 147
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00011 Score=74.89 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=37.3
Q ss_pred CCCCCCCCceeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 11 GYGPQRSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 11 ~~~~~~~~~~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+|+.-...+..+..+.+. |. -+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 3 ~~~~~~~~~l~i~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 3 EYTNHSDTTFALRNVSFR-VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred cccCCCCceEEEeeEEEE-ECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 455555556667666642 22 235566777775 889999999999999998864
No 148
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.0001 Score=74.64 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=26.2
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 19 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34556677775 889999999999999999864
No 149
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00011 Score=75.25 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=26.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 45667777776 899999999999999998863
No 150
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00012 Score=74.79 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 17 SGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 17 ~~~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.+++.++.|.+. +-..+.+..+.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 335666666653 111235566777775 89999999999999999998543
No 151
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=0.00011 Score=72.64 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45666777765 889999999999999999874
No 152
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00012 Score=73.12 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=33.2
Q ss_pred ceeEeEEEEEecc-------ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 19 ~~~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+..++.+... |. .+.+..+.+.+| +.+|+||||||||||+.+|.-.
T Consensus 5 ~l~~~~l~~~-~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 5 LLQCDNLCKR-YQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEEEeEEEE-cCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4556666643 21 245556677775 8999999999999999999743
No 153
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.56 E-value=0.00012 Score=70.93 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=26.2
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566777664 889999999999999998853
No 154
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.55 E-value=7.3e-05 Score=71.97 Aligned_cols=32 Identities=31% Similarity=0.326 Sum_probs=26.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667777776 899999999999999998863
No 155
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.00012 Score=71.95 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=27.2
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.|| +.+|+|||||||||++.+|.-.
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45567777775 7889999999999999999843
No 156
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.54 E-value=2.3e-05 Score=73.55 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=28.6
Q ss_pred ecccc---ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 29 NFMCH---SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 29 nf~~~---~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.|+.+ ++.+++..+| ++.|+|||||||||+++.|.-.+
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~ 54 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY 54 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc
Confidence 34444 4566666664 89999999999999999887544
No 157
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.53 E-value=0.00011 Score=73.91 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=26.9
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 45667777776 889999999999999999863
No 158
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00014 Score=73.25 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=32.0
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
...+..|.+. +..-+.+..+.|.+| +.+|+||||||||||+..|.-
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455555443 111235566777775 899999999999999998874
No 159
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.53 E-value=0.00015 Score=72.22 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=35.0
Q ss_pred CceeEeEEEEE--e---ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 18 GAGTITRVRLE--N---FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 18 ~~~~i~~i~l~--n---f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.++.+..+.+. + ...+.+..+.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34566666654 1 12346666777765 88999999999999999996443
No 160
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00015 Score=73.66 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=32.3
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
..+..|.+. +..-+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 8 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 8 IETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred EEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 445555543 222345666777776 899999999999999999863
No 161
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.53 E-value=0.00012 Score=72.85 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.|| +.+|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 45566777775 88999999999999999875
No 162
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00014 Score=68.46 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=26.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45667777776 889999999999999998854
No 163
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.52 E-value=0.00015 Score=70.04 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=25.2
Q ss_pred ceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 36 LQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 36 ~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
..+.+.|| +.+|+|||||||||++.+|.-.+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45666665 88999999999999999996543
No 164
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00013 Score=73.07 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
..+..|.+. +...+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 165
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00018 Score=73.65 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=32.8
Q ss_pred ceeEeEEEEEecc-----ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..|..+... |. .+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 7 ~l~i~~l~~~-~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 7 IIVFKNVSFQ-YQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred eEEEEEEEEE-cCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556666653 21 235566777775 889999999999999999964
No 166
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00018 Score=74.85 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=31.3
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
..|..|.+. +..-+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 46 l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred EEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 455555542 111234556677665 889999999999999999963
No 167
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.51 E-value=8.5e-05 Score=71.19 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=24.1
Q ss_pred ceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 36 LQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 36 ~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
-.++|++| +.+|+|||||||||++.+|..
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 35566665 899999999999999999963
No 168
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00015 Score=73.58 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=27.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34556677665 88999999999999999987433
No 169
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.50 E-value=0.00015 Score=72.94 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=27.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.|| +.+|+|||||||||++.+|.-.
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45566777775 8899999999999999998743
No 170
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.50 E-value=0.00016 Score=71.39 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35556677664 8899999999999999998743
No 171
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.50 E-value=0.00015 Score=72.73 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=26.1
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566777775 88899999999999999986
No 172
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.50 E-value=0.00015 Score=71.08 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=26.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++..|.-
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35566777665 889999999999999999863
No 173
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00014 Score=73.61 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=32.6
Q ss_pred ceeEeEEEEE--eccccccceeEcCC-CeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGE-WVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~-~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
+..++.+.+. +...+.+..+.+.+ .+.+|+|||||||||++.+|.-..|
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND 54 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc
Confidence 3445555543 11123455666666 4899999999999999999974333
No 174
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00015 Score=73.78 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=27.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.+| +++|+||||||||||+.+|.-.
T Consensus 17 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566777776 8999999999999999998643
No 175
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.50 E-value=8.7e-05 Score=73.44 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHh
No 176
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00017 Score=73.41 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=33.9
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+..|..|.+. +..-+.+..+.+.+| +.+|+||||||||||+.+|.-.+
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4556666653 111245566777775 88999999999999999987433
No 177
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00014 Score=73.29 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=27.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777776 8999999999999999999743
No 178
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00015 Score=71.37 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45566777775 889999999999999999863
No 179
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.49 E-value=0.00017 Score=66.99 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=25.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.|| +.+|+|||||||||++..|.-
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45556677775 788999999999999998853
No 180
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.49 E-value=0.00016 Score=73.33 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566777776 888999999999999999863
No 181
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00015 Score=72.77 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=31.9
Q ss_pred ceeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..++.|... |. .+.+..+.+.|| +.+|+|||||||||++.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 5 MLSFDKVSAH-YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEEEeEEEe-eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3455555553 22 235556677776 889999999999999999863
No 182
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.48 E-value=0.00016 Score=71.69 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=26.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.-.
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35556677665 8899999999999999999643
No 183
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.48 E-value=9.5e-05 Score=73.29 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=27.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35566777776 89999999999999999997433
No 184
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00015 Score=73.54 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=25.4
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4455666676 789999999999999999964
No 185
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.48 E-value=0.00016 Score=73.45 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=32.2
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+..+... +...+.+..+.|.|| +.+|+|||||||||++.+|.-
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3555555532 212345666777776 889999999999999998753
No 186
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.48 E-value=0.00014 Score=73.17 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=51.7
Q ss_pred CCCcccCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 964 SSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 964 ~~~~~~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
++.....+..|||||+.+++||..+++..+.|.|+++|||+.++| ..+.....+|.+.+ .. ..++|+|
T Consensus 146 ~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~-~~-g~~vi~i 215 (247)
T cd03275 146 PGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA-GP-NFQFIVI 215 (247)
T ss_pred cchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc-cC-CcEEEEE
Confidence 344455678899999999999999997666788999999999999 55555556566553 32 4577776
No 187
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.47 E-value=0.00011 Score=68.55 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=27.1
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.|| +.+|+|||||||||++.+|.-.
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45667777775 8899999999999999998643
No 188
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00017 Score=73.00 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=28.1
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.-.++
T Consensus 19 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 35566777775 889999999999999999975444
No 189
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.47 E-value=0.00015 Score=72.80 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=25.3
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.|.+| +.+|+|||||||||++..|.-
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4556677665 889999999999999999864
No 190
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00018 Score=68.14 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=0.0
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
..+..|.+. +-.-+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
No 191
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.47 E-value=9.5e-05 Score=72.22 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=26.2
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566677665 899999999999999999864
No 192
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.47 E-value=0.00014 Score=73.42 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=26.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35556777776 899999999999999999864
No 193
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00019 Score=73.22 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=26.2
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
.+..+.|.+| +.+|+||||||||||+.+|.-.
T Consensus 37 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4556777775 8999999999999999998543
No 194
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.47 E-value=0.00017 Score=72.01 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=26.9
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+||||||||||+..|.-
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45666777776 899999999999999999874
No 195
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.0002 Score=75.48 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 17 SGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 17 ~~~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+..|... ++.-+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 344556666653 222235566777765 89999999999999999986
No 196
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.46 E-value=0.00015 Score=74.17 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=25.8
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.+| +.+|+||||||||||+..|.-
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556677775 899999999999999998873
No 197
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00018 Score=73.09 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=32.6
Q ss_pred ceeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+..|.+. |. .+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 5 ILQVSDLSVY-YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eEEEEeeEEE-ECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3455555543 21 235667777776 899999999999999999864
No 198
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.46 E-value=0.00018 Score=71.72 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=27.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35566777775 88999999999999999987554
No 199
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00019 Score=72.83 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=32.9
Q ss_pred ceeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+..|.+. |. .+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 5 IITSSDVHLF-YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred eEEEEeEEEE-ECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455566553 22 235666777776 899999999999999999964
No 200
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.45 E-value=0.00014 Score=71.62 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=26.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45667777775 889999999999999999863
No 201
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.0001 Score=72.96 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=25.9
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4556677775 889999999999999999863
No 202
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00019 Score=73.40 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=27.9
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45566777776 89999999999999999997543
No 203
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.0002 Score=72.55 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=26.9
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.|| +.+|+|||||||||++.+|.-.
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35566677776 8899999999999999998753
No 204
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.45 E-value=0.00017 Score=58.31 Aligned_cols=51 Identities=24% Similarity=0.108 Sum_probs=37.6
Q ss_pred ccCCCCCCcccc-hHHHHHHHHHhhh---h----cC-CCeeEeehhhhhh--hhHHHHHHHH
Q 001670 968 VRDTRGLSGGER-SFSTLCFALALHE---M----TE-APFRAMDEFDVFM--VSFYINYVFS 1018 (1034)
Q Consensus 968 ~~~~~~lSGGEk-s~~~lall~al~~---~----~~-~Pf~vlDEiD~~~--~~~~~~~~~l 1018 (1034)
..+...+||||+ ..++++|.+|+.. . .+ +.+++|||.-..| .+....+.+|
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 455788999999 8888888888743 1 12 3499999999999 6776666655
No 205
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00021 Score=73.51 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=25.5
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.|| +.+|+||||||||||+.+|.-
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455667665 889999999999999999964
No 206
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.45 E-value=0.00021 Score=70.74 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=26.1
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35556777775 889999999999999999963
No 207
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.45 E-value=0.00021 Score=70.86 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=0.0
Q ss_pred CCCCCceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 14 PQRSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 14 ~~~~~~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
....++..++.|... +-.-+.+..+.+.|| +.+|+|||||||||++.+|.
T Consensus 2 ~~~~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 2 QENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVA 54 (225)
T ss_pred CCCCceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 208
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.45 E-value=0.00021 Score=72.27 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=26.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45566777665 8899999999999999998733
No 209
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.45 E-value=0.00011 Score=71.83 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=26.0
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
++..+.|.+| +.+|+|||||||||++..|.-.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556777765 8899999999999999988743
No 210
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00018 Score=72.82 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred eecceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35556677775 899999999999999999964
No 211
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.44 E-value=0.082 Score=47.63 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 641 IKDLERAALHVQEEAQQCRKRKRDSEERLQDLQ 673 (1034)
Q Consensus 641 i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~ 673 (1034)
+..+..++..++.++...+.++..+..++.++.
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eae 38 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAE 38 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444433
No 212
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.44 E-value=0.00011 Score=71.32 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=28.1
Q ss_pred cccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 31 MCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 31 ~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.|-+.+|.+++| +++|+|||||||||++.+|.-
T Consensus 17 ~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 17 ETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 4455567777776 999999999999999999983
No 213
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.44 E-value=0.00019 Score=69.50 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35566677775 8889999999999999987643
No 214
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0002 Score=72.21 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=25.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34556677665 88999999999999999986
No 215
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.44 E-value=0.00014 Score=70.48 Aligned_cols=33 Identities=42% Similarity=0.548 Sum_probs=28.2
Q ss_pred ccccceeEcCCC--eEEEEcCCCCCHHHHHHHHHH
Q 001670 32 CHSSLQIELGEW--VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 32 ~~~~~~i~f~~~--~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.|.+.++.++++ +.+|+|||||||||++..|..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHH
Confidence 455677888886 799999999999999999883
No 216
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.44 E-value=0.00019 Score=71.77 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=26.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.|| +.+|+|||||||||++.+|.
T Consensus 16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45667778886 88999999999999999996
No 217
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.0002 Score=72.85 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=27.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.+| +.+|+|||||||||++..|.-.+
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 20 VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34566777775 88999999999999999987543
No 218
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.0002 Score=72.67 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35566777776 889999999999999998864
No 219
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.44 E-value=0.00019 Score=68.88 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=47.9
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..+..||||||.+++||..+++....|.|+++|||+++++ .+......+|.+.+. ..++|+|
T Consensus 109 ~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~tiIii 172 (197)
T cd03278 109 QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK---ETQFIVI 172 (197)
T ss_pred cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc---CCEEEEE
Confidence 3467899999999999998886556778899999999999 666666666665432 3567765
No 220
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00024 Score=71.37 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCceeEeEEEEEecccc--ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 17 SGAGTITRVRLENFMCH--SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 17 ~~~~~i~~i~l~nf~~~--~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+++..+..+...--... .+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred CceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
No 221
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00019 Score=71.82 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred ceeEeEEEEE--ec----cccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 19 AGTITRVRLE--NF----MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 19 ~~~i~~i~l~--nf----~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
|..+..+.+. +- ..+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
No 222
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.42 E-value=0.00021 Score=74.46 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=25.3
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4556667675 88999999999999999986
No 223
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.42 E-value=0.0002 Score=72.60 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=26.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (248)
T PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 35566677665 889999999999999998764
No 224
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.42 E-value=0.00028 Score=69.34 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=32.1
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+..+... +-..+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 4555666542 111235556677775 888999999999999999964
No 225
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00021 Score=72.76 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=32.3
Q ss_pred eeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 20 GTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 20 ~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
..|..|... |. .+.+..+.+.+| +.+|+||||||||||+..|.-.+
T Consensus 13 l~i~~l~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 13 YQINGMNLW-YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEeeEEEE-ECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455555542 22 134556667775 89999999999999999998443
No 226
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00025 Score=70.78 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=24.6
Q ss_pred cceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 35 SLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455666665 889999999999999998853
No 227
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.41 E-value=0.02 Score=67.26 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=25.3
Q ss_pred cccceeEcCC--CeEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGE--WVNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~--~~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
|-+.+|.+++ .+.+|||||++||||++..|..+
T Consensus 316 ~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~ 350 (782)
T PRK00409 316 VVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLA 350 (782)
T ss_pred eECceeEECCCceEEEEECCCCCCcHHHHHHHHHH
Confidence 4344566655 36799999999999999998643
No 228
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00026 Score=72.34 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=32.2
Q ss_pred ceeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+..|... |. .+.+..+.+.+| +.+|+||||||||||+..|.-
T Consensus 13 ~l~i~nl~~~-~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 13 IISLQNVTIS-YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred eEEEEeEEEE-ECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555555443 22 235566777775 889999999999999999874
No 229
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.41 E-value=0.00014 Score=69.12 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=26.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++..|.-
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667777775 899999999999999999863
No 230
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00029 Score=72.43 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=31.9
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
..+..|.+. +-..+.+..+.|.+| +.+|+||||||||||+..|.-.
T Consensus 40 l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred EEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445555442 111235566777775 8899999999999999999643
No 231
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00029 Score=72.14 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=26.5
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4556677776 8899999999999999999654
No 232
>PRK10908 cell division protein FtsE; Provisional
Probab=97.40 E-value=0.00026 Score=70.24 Aligned_cols=31 Identities=29% Similarity=0.665 Sum_probs=25.9
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566777664 88899999999999999987
No 233
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00032 Score=71.83 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 41 l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laG 73 (272)
T PRK14236 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNR 73 (272)
T ss_pred eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35556777775 899999999999999999963
No 234
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00027 Score=71.79 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35556677776 889999999999999999873
No 235
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.40 E-value=0.00016 Score=71.28 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=26.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 15 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 45667777775 899999999999999998853
No 236
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00021 Score=72.97 Aligned_cols=31 Identities=35% Similarity=0.558 Sum_probs=25.9
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.|.|| +.+|+||||||||||+.+|.-
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4556677776 899999999999999998863
No 237
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.39 E-value=0.00024 Score=71.40 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=27.2
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.-.
T Consensus 19 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 45666777775 8999999999999999998743
No 238
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.39 E-value=0.00015 Score=68.33 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=26.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 18 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44556677665 8899999999999999999643
No 239
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.39 E-value=0.00014 Score=71.74 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.|| +.+|+|||||||||++.+|.-
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35566777776 788999999999999999964
No 240
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00017 Score=67.91 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=27.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.|| +.+|+|||||||||++.+|.-.+
T Consensus 18 l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 35566777665 89999999999999999996544
No 241
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.39 E-value=0.00023 Score=73.93 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.3
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+.+.+| +.+|+|||||||||++..|.
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 4556677776 89999999999999999885
No 242
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00026 Score=70.71 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=28.0
Q ss_pred ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 32 CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 32 ~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
-|.+..+.+.|| +.+|+|||||||||++.+|.-
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g 48 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 356777788886 889999999999999999963
No 243
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.39 E-value=0.00025 Score=71.56 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=27.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.|| +.+|+|||||||||++.+|.-.+
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566777775 78899999999999999997543
No 244
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.38 E-value=0.27 Score=52.20 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=22.3
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 176 KDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEA 214 (1034)
Q Consensus 176 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 214 (1034)
.++|.++.....+..+...+..+.+.+......+.++..
T Consensus 94 ~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~ 132 (570)
T COG4477 94 ADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVE 132 (570)
T ss_pred hhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666666666665555555543
No 245
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00025 Score=71.41 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566777775 889999999999999999863
No 246
>PRK09039 hypothetical protein; Validated
Probab=97.38 E-value=0.074 Score=55.67 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAE 687 (1034)
Q Consensus 637 ~~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 687 (1034)
+..++...+.++..++.++..+-..+.--......++..+..++..+..++
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~ 94 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAE 94 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344555555556555555555444443333334444444444444444333
No 247
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00025 Score=71.95 Aligned_cols=33 Identities=36% Similarity=0.435 Sum_probs=26.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35556677665 8899999999999999999743
No 248
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.38 E-value=0.00025 Score=72.05 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=31.4
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
..+..|... +..-+.+..+.|.+| +.+|+|||||||||++..|.-.
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445555442 111245566677665 8899999999999999988743
No 249
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.38 E-value=0.1 Score=47.29 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNV 679 (1034)
Q Consensus 640 ~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~ 679 (1034)
.+.+|+..-..+..+...+...+..++..-..+..++..+
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L 48 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDL 48 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333333333333
No 250
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.38 E-value=0.00037 Score=68.19 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=32.3
Q ss_pred eeEeEEEEEecc-----ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 20 GTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 20 ~~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+. |. .+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 7 l~~~~l~~~-~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 7 IEVENLSVR-YAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred EEEEEEEEE-eCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 555555553 22 245566777775 899999999999999999854
No 251
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00027 Score=72.89 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred CceeEeEEEEEecc--------ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 18 GAGTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 18 ~~~~i~~i~l~nf~--------~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+...+..|.+. |. -+.+.++.+.+| +++|+|||||||||++.+|+
T Consensus 1 ~~l~~~~l~~~-y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~ 54 (286)
T PRK13646 1 MTIRFDNVSYT-YQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNIN 54 (286)
T ss_pred CEEEEEEEEEE-ECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 252
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00026 Score=72.44 Aligned_cols=32 Identities=38% Similarity=0.405 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (271)
T PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTG 57 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35556777776 899999999999999998863
No 253
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.37 E-value=0.00017 Score=59.37 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=25.0
Q ss_pred ccceeEcCC-CeEEEEcCCCCCHHHHHHHHH
Q 001670 34 SSLQIELGE-WVNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NGsGKSti~~ai~ 63 (1034)
++..+.+.+ .+.+|+||+||||||++.++.
T Consensus 6 ~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 6 HGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 455667777 478999999999999999975
No 254
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00023 Score=71.71 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=25.7
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
.+..+.+.|| +.+|+|||||||||++.+|.-.
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4555666664 8899999999999999998743
No 255
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.37 E-value=0.00026 Score=70.68 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=0.0
Q ss_pred eEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 21 TITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 21 ~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..|.+. +-..+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHh
No 256
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00016 Score=69.54 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 23 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEccEEEEeCCcEEEEECCCCCCHHHHHHHHh
No 257
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.36 E-value=0.44 Score=54.22 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSK 693 (1034)
Q Consensus 640 ~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 693 (1034)
+|..|+.++..++.+-..+...+...+.++...+..+.....++..+...+..+
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL 319 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDAL 319 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555555555555555555555554444444444444444444443
No 258
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00036 Score=71.26 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=32.3
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+..|.+. +...+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445555542 112245666777775 899999999999999999853
No 259
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.36 E-value=0.00027 Score=72.07 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.-.
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35566777775 8999999999999999999743
No 260
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00028 Score=72.06 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=27.0
Q ss_pred cccceeEcCC-CeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGE-WVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~-~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.| .+++|+||||||||||+.+|.-.+
T Consensus 35 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455667766 488999999999999999997543
No 261
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.36 E-value=0.00029 Score=74.44 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=31.8
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
++.+..|... ++.-+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG 52 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3455555543 222234556677664 899999999999999999874
No 262
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00029 Score=71.38 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35556777675 899999999999999999963
No 263
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.36 E-value=0.0004 Score=70.46 Aligned_cols=56 Identities=23% Similarity=0.189 Sum_probs=36.1
Q ss_pred cCCCCCCCCCCCceeEeEEEEEecc-----ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 7 SSESGYGPQRSGAGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 7 ~~~~~~~~~~~~~~~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
||.+|+....+ ...+..+.+. |. -+.+..+.|.|| +.+|+|||||||||++.+|.-
T Consensus 8 ~~~~~~~~~~~-~i~~~~l~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (257)
T cd03288 8 SSNSGLVGLGG-EIKIHDLCVR-YENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFR 69 (257)
T ss_pred CCCcccccCCc-eEEEEEEEEE-eCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 45445443332 2445555443 21 234556677775 899999999999999999864
No 264
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00029 Score=72.24 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 18 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45666777776 89999999999999999986
No 265
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.36 E-value=0.00029 Score=69.41 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=0.0
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+... +-.-+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHh
No 266
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.36 E-value=0.00027 Score=70.71 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=26.9
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35666777775 8889999999999999999643
No 267
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00027 Score=71.66 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=27.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.|| +.+|+||||||||||+.+|.-.
T Consensus 21 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 21 LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667777776 8899999999999999998743
No 268
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.36 E-value=0.00017 Score=70.72 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=27.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45666777765 88999999999999999997433
No 269
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.0003 Score=72.13 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=31.9
Q ss_pred eeEeEEEEEe--c--cccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 20 GTITRVRLEN--F--MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 20 ~~i~~i~l~n--f--~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
..+..+.+.- . ..+.+..+.|.+| +++|+|||||||||++.+|+
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~ 54 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLN 54 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4555665531 1 1235566777776 89999999999999999986
No 270
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.35 E-value=0.00029 Score=69.94 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=26.9
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.+..+.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566777776 88999999999999999887433
No 271
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.35 E-value=0.00017 Score=71.83 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
No 272
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.35 E-value=0.00033 Score=72.68 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.3
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.+| +.+|+|||||||||++..|+-
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4455666665 889999999999999999963
No 273
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.35 E-value=0.00028 Score=72.01 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCceeEeEEEEE-----------eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 17 SGAGTITRVRLE-----------NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 17 ~~~~~i~~i~l~-----------nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+..|.+. +-.-+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
No 274
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.0003 Score=72.55 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=25.6
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4456677675 889999999999999999863
No 275
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00032 Score=75.87 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=37.6
Q ss_pred CCCCCCCCceeEeEEEEEecc-----ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 11 GYGPQRSGAGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 11 ~~~~~~~~~~~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.|.+.+.++..++.|.+..=. -+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 13 ~y~~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaG 72 (549)
T PRK13545 13 KYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAG 72 (549)
T ss_pred eccccccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 566667777777777543111 123445666665 888999999999999999863
No 276
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.34 E-value=0.00019 Score=71.44 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.9
Q ss_pred cceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 35 SLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 33 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISG 33 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455666665 899999999999999999863
No 277
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.34 E-value=0.00022 Score=69.13 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=26.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.|| +.+|+|||||||||++.+|.-
T Consensus 16 l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G 48 (200)
T cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred eeccceEECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45666777776 899999999999999999853
No 278
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.34 E-value=0.00018 Score=71.08 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=27.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
|.+..+.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34556677665 89999999999999999987544
No 279
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.34 E-value=0.00015 Score=73.11 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=30.2
Q ss_pred EeEEEEEeccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 22 ITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
|..|.+.. .+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 3 ~~~l~~~~--~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 3 LNDVAVST--RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred ccccchhc--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 44444431 356667777665 889999999999999999864
No 280
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00029 Score=72.41 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=25.6
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 57 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMN 57 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556677776 88999999999999999996
No 281
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00027 Score=71.94 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=32.2
Q ss_pred ceeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 19 ~~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+..|..|.+. |. .+.+..+.|.+| +.+|+||||||||||+.+|.-.
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 5 LLSVSGLMMR-FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eEEEeeEEEE-ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3555555543 22 234556677665 8889999999999999988743
No 282
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.33 E-value=0.00029 Score=71.47 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=25.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.|| +.+|+||||||||||+..|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILM 47 (252)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34556677665 88899999999999999986
No 283
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00029 Score=72.11 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=26.1
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556677776 889999999999999999863
No 284
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00031 Score=72.44 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=27.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.+| +++|+|||||||||++.+|+-.
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35556777775 8999999999999999999643
No 285
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.33 E-value=0.00032 Score=73.67 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=25.2
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3445566665 889999999999999999964
No 286
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00035 Score=68.66 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=25.0
Q ss_pred cceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 35 SLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+.+.|| +.+|+|||||||||++.+|.-
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455666665 889999999999999999863
No 287
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.33 E-value=0.48 Score=53.91 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 640 KIKDLERAALHVQEEAQQCRKRKRDSE 666 (1034)
Q Consensus 640 ~i~~l~~~l~~~~~~l~~l~~~~~~l~ 666 (1034)
..+.+..++-.++.-+..-+.++..++
T Consensus 584 d~e~l~eqilKLKSLLSTKREQIaTLR 610 (717)
T PF09730_consen 584 DKEELQEQILKLKSLLSTKREQIATLR 610 (717)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555445554444444444443
No 288
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00032 Score=72.10 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=32.9
Q ss_pred ceeEeEEEEEecc-----ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 19 ~~~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+..|..|.+. |. .+.+..+++.+| +.+|+|||||||||++.+|+-.
T Consensus 5 ~l~i~~l~~~-~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 5 IVEFKHVSFT-YPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred eEEEEEEEEE-cCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 3456666543 22 245556777775 8999999999999999998643
No 289
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.32 E-value=0.45 Score=53.51 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRC 683 (1034)
Q Consensus 639 ~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 683 (1034)
.++.+....+..+..++..+......++..+...+..+..++...
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333333333333
No 290
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00035 Score=70.76 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 20 l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14249 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNR 52 (251)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35666777775 889999999999999999863
No 291
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.0002 Score=71.56 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=26.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35566777776 889999999999999999963
No 292
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.0004 Score=70.46 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=27.8
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.|| +.+|+||||||||||+.+|.-.+
T Consensus 24 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 46667777776 88999999999999999986433
No 293
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.32 E-value=0.46 Score=53.45 Aligned_cols=53 Identities=6% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNR 690 (1034)
Q Consensus 638 ~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 690 (1034)
...+..+..++...+..+.........+......++.++...+..+..+....
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666555555555555555555555554444444444333
No 294
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00039 Score=65.00 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 43 WVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 43 ~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
.+++++|+||+||||++.||+-..-
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5889999999999999999975553
No 295
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.31 E-value=5.2e-05 Score=80.11 Aligned_cols=24 Identities=54% Similarity=0.846 Sum_probs=0.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 44 VNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 44 ~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
+|+|+||||||||||++||.+++.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~~ 24 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLFS 24 (303)
T ss_dssp ------------------------
T ss_pred CCcccccccccccccccccccccc
Confidence 578888888888888888887765
No 296
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00035 Score=71.03 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=27.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.|| +.+|+|+||||||||+..|.-.+
T Consensus 23 l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35566777775 88999999999999999998544
No 297
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00035 Score=70.83 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=31.9
Q ss_pred eeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 20 GTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 20 ~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
..+..|.+. |+ .+.+..+.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 5 l~~~~l~~~-~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 5 ISAKDVHLS-YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEEeeEEE-ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 345555543 22 234556667665 78899999999999999998543
No 298
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.31 E-value=0.23 Score=49.81 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001670 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRK 229 (1034)
Q Consensus 186 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~ 229 (1034)
..++.+...+...++.+..........+.+.+....++.....+
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e 117 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQE 117 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666655555555544444433
No 299
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.31 E-value=0.00037 Score=67.64 Aligned_cols=44 Identities=30% Similarity=0.329 Sum_probs=0.0
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.|..|... +-..+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh
No 300
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.30 E-value=0.00035 Score=71.07 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=31.8
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..|.+. +...+.+..+.+.+| +.+|+||||||||||+.+|.-.
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445555443 112235566677775 7789999999999999988743
No 301
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.45 Score=53.05 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=7.5
Q ss_pred EEeccccccceeEcC
Q 001670 27 LENFMCHSSLQIELG 41 (1034)
Q Consensus 27 l~nf~~~~~~~i~f~ 41 (1034)
+.+||++-+...+|+
T Consensus 371 vvllmsm~ne~q~~~ 385 (970)
T KOG0946|consen 371 VVLLMSMFNEKQPFS 385 (970)
T ss_pred hHHHHHHHhccCCch
Confidence 456666644344443
No 302
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.30 E-value=0.00042 Score=66.70 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCceeEeEEEEE--e------ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 17 SGAGTITRVRLE--N------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 17 ~~~~~i~~i~l~--n------f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+.+.+..+.+. + -..+.+..+.+.+| +.+|+|||||||||++..|.
T Consensus 1 ~~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~ 56 (194)
T cd03213 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred CcEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHh
No 303
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00039 Score=71.18 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=32.2
Q ss_pred eeEeEEEEEe-cc--ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 20 GTITRVRLEN-FM--CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 20 ~~i~~i~l~n-f~--~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.- .. .+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 5 l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4455555431 11 235556677775 8999999999999999999743
No 304
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.29 E-value=0.0004 Score=70.64 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCCCceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 14 PQRSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 14 ~~~~~~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
|-...+..+..|... +-..+.+..+.|.|| +.+|+|||||||||++..|.
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 1 MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred CCCCceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHh
No 305
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.0002 Score=69.40 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.+| +.+|+||||||||||+..|.
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALA 54 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHHHhc
No 306
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.29 E-value=0.00022 Score=73.13 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.5
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.+..+.|.+| ++++.|||||||||++.+|.-.+
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4566778887 99999999999999999986543
No 307
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00023 Score=71.41 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=27.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.+
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45667777776 88999999999999999986433
No 308
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00037 Score=74.29 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=25.5
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4556677664 889999999999999999863
No 309
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.28 E-value=0.0002 Score=66.73 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=0.0
Q ss_pred eEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 38 IELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 38 i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.|.+| +.+|+|||||||||++..|.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHH
No 310
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.28 E-value=0.00039 Score=73.80 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=31.5
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
..|..|... ++.-+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 15 L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred EEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 445555542 111234556677664 8999999999999999998743
No 311
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00038 Score=70.20 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=26.2
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.|| +.+|+||||||||||+.+|.-
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35556677775 888999999999999999874
No 312
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.28 E-value=0.00023 Score=67.49 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=26.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34556677665 8889999999999999998643
No 313
>PRK09039 hypothetical protein; Validated
Probab=97.28 E-value=0.11 Score=54.43 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 001670 260 RQLKEQTLKIEKLKDRIPRC 279 (1034)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~ 279 (1034)
.++...+.++..++.++..+
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L 65 (343)
T PRK09039 46 REISGKDSALDRLNSQIAEL 65 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 314
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00042 Score=71.32 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=33.3
Q ss_pred ceeEeEEEEEe---ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 19 AGTITRVRLEN---FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 19 ~~~i~~i~l~n---f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+..+..|.+.- ..-+.+..+.|.+| +.+|+|||||||||++.+|+-.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455555531 11234566777776 89999999999999999996543
No 315
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00037 Score=73.67 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=0.0
Q ss_pred ceeEeEEEEE------eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 19 AGTITRVRLE------NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 19 ~~~i~~i~l~------nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
|..+..|... +...+.+..+.|.+| +.+|+|||||||||++..|.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~ 52 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN 52 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
No 316
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.28 E-value=0.0004 Score=69.76 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=27.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 35556777665 89999999999999999997443
No 317
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.28 E-value=0.00022 Score=70.50 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=25.6
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456677775 889999999999999999973
No 318
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.27 E-value=0.3 Score=50.44 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 676 QQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQF 742 (1034)
Q Consensus 676 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 742 (1034)
++.++.+...+.+....++.....++...+. ....+..+..++...+.++..+....+.+..
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~-----~~g~l~kl~~eie~kEeei~~L~~~~d~L~~ 358 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQE-----WPGKLEKLKSEIELKEEEIKALQSNIDELHK 358 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3334444444444444444444444433332 3334444444444444444444444444433
No 319
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00041 Score=70.34 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.|| +.+|+||||||||||+.+|.-.+
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35556777775 88999999999999999996543
No 320
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00039 Score=71.35 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=26.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.+.+| +++|+|||||||||++.+|+-.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34556666664 8999999999999999998643
No 321
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.27 E-value=0.00038 Score=73.48 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=26.2
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556667664 8999999999999999998753
No 322
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.27 E-value=0.0003 Score=66.96 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=0.0
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcCCCcC
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAK 71 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg~~~~ 71 (1034)
.+..+.+.+| +.+|+||+||||||++..|....-..+.
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G 60 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
No 323
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.27 E-value=0.00044 Score=68.39 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=26.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~ 52 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566777776 89999999999999999996
No 324
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.27 E-value=0.00024 Score=71.01 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
No 325
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.26 E-value=0.00055 Score=72.90 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=25.1
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3455666664 889999999999999999873
No 326
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.25 E-value=0.00046 Score=70.43 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred CceeEeEEEEEe-----------ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 18 GAGTITRVRLEN-----------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 18 ~~~~i~~i~l~n-----------f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+..|...- ..-+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T TIGR02769 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLL 58 (265)
T ss_pred CeEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHh
No 327
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.25 E-value=0.00026 Score=69.10 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=26.1
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++..|.-
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G 53 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556777665 899999999999999999854
No 328
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.25 E-value=0.00024 Score=72.52 Aligned_cols=31 Identities=39% Similarity=0.467 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 29 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 60 (267)
T PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHh
No 329
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00023 Score=73.63 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 27 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
No 330
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00046 Score=70.81 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=26.6
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 21 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 21 NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred eEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556777776 8899999999999999999643
No 331
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00026 Score=72.30 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=0.0
Q ss_pred eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 29 NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 29 nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+...+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 332
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.00041 Score=70.66 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=25.1
Q ss_pred ceeEcCC-CeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 36 LQIELGE-WVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 36 ~~i~f~~-~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
..+++.+ .+.+|+|||||||||+|..|.-..
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556666 499999999999999999997543
No 333
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.24 E-value=0.18 Score=47.33 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 376 SEIEAKLKELQCEIDAANITLSRMKE 401 (1034)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1034)
..+..++..+...+......+..+..
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 334
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.00074 Score=69.15 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=32.5
Q ss_pred ceeEeEEEEEecc---ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..|..|.+. |. -+.+..+.|.|| +.+|+||||||||||+.+|.-
T Consensus 21 ~l~i~nl~~~-~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 21 AMAAVNLTLG-FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred EEEEeeEEEE-ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4466666654 22 135566777775 888999999999999999963
No 335
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.24 E-value=0.00046 Score=69.99 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCceeEeEEEEE-eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 17 SGAGTITRVRLE-NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 17 ~~~~~i~~i~l~-nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+..|... +-..+.+..+.|.|| +.+|+||||||||||+..|.
T Consensus 2 ~~~l~~~~l~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 50 (254)
T PRK10418 2 PQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAAL 50 (254)
T ss_pred CcEEEEeCeEEEeccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 336
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.23 E-value=0.00043 Score=73.99 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=30.7
Q ss_pred ceeEeEEEEEeccc---cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
++.++.|.+. |.. +.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 3 ~L~~~nls~~-y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 3 MIDVSDLSVE-FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred eEEEeeEEEE-ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 3455555542 221 24455666664 788999999999999999864
No 337
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.23 E-value=0.00028 Score=70.17 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=26.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-.
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666664 8899999999999999998644
No 338
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.23 E-value=0.00029 Score=69.82 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 339
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.22 E-value=0.00027 Score=73.56 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=26.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45566777776 889999999999999999873
No 340
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.22 E-value=0.38 Score=50.63 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001670 381 KLKELQCEIDAANITLSRMK 400 (1034)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~ 400 (1034)
.+..+..++..+......+.
T Consensus 224 ~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhh
Confidence 33333333333333333333
No 341
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.00042 Score=67.55 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=21.8
Q ss_pred ceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 36 LQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 36 ~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
..+.+.+| .++|+||||||||||+..+.-.+
T Consensus 23 v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 34555655 77888888888888887766544
No 342
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00047 Score=67.23 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=47.7
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEE
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFY 1031 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~ 1031 (1034)
+++..||||||.++|||=++|+. .-++||||.-+++ .+++..+.+|.+.....+.+.++
T Consensus 134 r~p~~LSGGqkqRvaIA~vLa~~----P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~ 194 (235)
T COG1122 134 RPPFNLSGGQKQRVAIAGVLAMG----PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII 194 (235)
T ss_pred CCccccCCcceeeHHhhHHHHcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 34578999999999999999875 3499999999999 89999998888876544444444
No 343
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00027 Score=72.79 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 54 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLN 54 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
No 344
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00051 Score=72.63 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=25.7
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 4556677665 889999999999999999864
No 345
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00042 Score=70.10 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=26.3
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 26 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35666777776 89999999999999999887
No 346
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.19 E-value=0.00034 Score=69.42 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHHc
Confidence 35566777775 899999999999999999863
No 347
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00055 Score=69.55 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=26.3
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.+..+.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4556667675 88999999999999999985443
No 348
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00033 Score=70.85 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=0.0
Q ss_pred eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 29 NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 29 nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
++.-+.+..+.+.|| +.+|+|||||||||++.+|.
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 349
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00045 Score=63.30 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=24.0
Q ss_pred ceeEcCC-CeEEEEcCCCCCHHHHHHHHHHH
Q 001670 36 LQIELGE-WVNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 36 ~~i~f~~-~~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
..+++.+ .+|+|+||+||||||++.++--+
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 3455544 69999999999999999988654
No 350
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00035 Score=70.16 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 351
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00066 Score=70.08 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=0.0
Q ss_pred c-eeEeEEEEEe-------ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 19 A-GTITRVRLEN-------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 19 ~-~~i~~i~l~n-------f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
| +.+..|...- ...+.+..+.+.+| +++|+|||||||||++.+|+
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (290)
T PRK13634 1 MDITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54 (290)
T ss_pred CEEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh
No 352
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.16 E-value=0.65 Score=56.27 Aligned_cols=14 Identities=14% Similarity=0.017 Sum_probs=11.0
Q ss_pred cCCCeeEeehhhhh
Q 001670 994 TEAPFRAMDEFDVF 1007 (1034)
Q Consensus 994 ~~~Pf~vlDEiD~~ 1007 (1034)
.|.|++.|.+|..+
T Consensus 1025 ~P~P~V~~~~fgds 1038 (1109)
T PRK10929 1025 NPAPEVFLVDLQQG 1038 (1109)
T ss_pred CCCCEEEEEecCCC
Confidence 58899888888655
No 353
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.16 E-value=0.00038 Score=69.20 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAIS 54 (226)
T ss_pred ccCceEEEcCCeEEEEECCCCCCHHHHHHHHh
No 354
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.15 E-value=0.00064 Score=66.84 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=24.9
Q ss_pred ccceeEcCC-CeEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.|.+ .+.+|+|||||||||++.+|.-
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAG 46 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345566655 4888999999999999999963
No 355
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00065 Score=67.92 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.5
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+.++.|.|| +.+|+|||||||||++.+|.-
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G 47 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45666777775 889999999999999998844
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00063 Score=63.04 Aligned_cols=54 Identities=24% Similarity=0.172 Sum_probs=43.0
Q ss_pred CCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 974 lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|||||+.+++||..++.. .|+++|||+.++| .++.....+|.+... . ..++|+|
T Consensus 81 lS~G~~~r~~l~~~l~~~----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~-~~tii~~ 136 (157)
T cd00267 81 LSGGQRQRVALARALLLN----PDLLLLDEPTSGLDPASRERLLELLRELAE-E-GRTVIIV 136 (157)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEE
Confidence 999999999999988864 7999999999999 677777777766543 2 3566665
No 357
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00067 Score=69.96 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=0.0
Q ss_pred ceeEeEEEEEecc--------ccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 19 AGTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 19 ~~~i~~i~l~nf~--------~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
|..++.|.+ .|. .+.+..+.+.+| +.+|+|||||||||++..|.
T Consensus 1 mi~~~~v~~-~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~ 53 (288)
T PRK13643 1 MIKFEKVNY-TYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLN 53 (288)
T ss_pred CEEEEEEEE-EeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHh
No 358
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.14 E-value=0.00064 Score=69.10 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=0.0
Q ss_pred eeEeEEEEEecccc--ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 20 GTITRVRLENFMCH--SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~--~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+....-... .+..+.+.|| +.+|+|||||||||++.+|.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 48 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLA 48 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc
No 359
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.14 E-value=0.00065 Score=76.79 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=44.5
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..||||||.+++||..++. +.++++|||+-++| .++...+++|.+.+. .+. -+|+|
T Consensus 401 ~~~LSgG~kqrl~la~al~~----~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~-tiIiv 459 (510)
T PRK15439 401 ARTLSGGNQQKVLIAKCLEA----SPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNV-AVLFI 459 (510)
T ss_pred cccCCcHHHHHHHHHHHHhh----CCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCC-EEEEE
Confidence 46789999999999987763 57899999999999 788888887777654 333 35554
No 360
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00062 Score=69.28 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=0.0
Q ss_pred CceeEeEEEEEec-------cccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 18 GAGTITRVRLENF-------MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 18 ~~~~i~~i~l~nf-------~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.-.|-.|++.|. .-+.+..+.+.+| +.+|+||||||||||+..|.
T Consensus 1 ~~~~~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 54 (261)
T PRK14258 1 MSKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN 54 (261)
T ss_pred CCcccceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHh
No 361
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.0007 Score=69.49 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred CceeEeEEEEE-----eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 18 GAGTITRVRLE-----NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 18 ~~~~i~~i~l~-----nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+..|.+. ++..+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~ 54 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLID 54 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
No 362
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00058 Score=65.10 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=25.9
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.+..++..+| +..|+||+||||||++..|.-..
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555555554 88899999999999999987544
No 363
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.0004 Score=71.91 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=0.0
Q ss_pred eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 29 NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 29 nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+...+.+..+.+.+| +.+|+|||||||||++.+|+
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~ 54 (305)
T PRK13651 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLN 54 (305)
T ss_pred cccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHh
No 364
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00074 Score=71.03 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=27.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus 23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 35556677665 88899999999999999986433
No 365
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.12 E-value=0.46 Score=49.71 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Q 001670 200 NHLNKGDALVLELEATIKPTEKELS 224 (1034)
Q Consensus 200 ~~l~~~~~~l~~~~~~~~~l~~~~~ 224 (1034)
.++......+..+++.+....++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~ 62 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRA 62 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333
No 366
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.11 E-value=0.00093 Score=64.61 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=45.7
Q ss_pred CCCCCCcccchHHHHHHHHHhhh--hcCCCeeEeehhhhhh--hhHH-HHHHHHHHhhcCCCCceEEEe
Q 001670 970 DTRGLSGGERSFSTLCFALALHE--MTEAPFRAMDEFDVFM--VSFY-INYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 970 ~~~~lSGGEks~~~lall~al~~--~~~~Pf~vlDEiD~~~--~~~~-~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
.+..|||||+.+++||+.+||.. ..+.|+++|||+..+| ..+. ...++|.+... ....++|+|
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~-~~~~~iiii 179 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS-QKNFQLIVI 179 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-ccCCEEEEE
Confidence 35789999999999887777644 4578999999999999 4555 55566655433 224566665
No 367
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.11 E-value=0.00059 Score=78.04 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=39.4
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHh
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDF 1021 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~ 1021 (1034)
+..||||||.+++||..++ .+.|+++|||+.++| .++....++|.++
T Consensus 441 ~~~LSgGe~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 489 (552)
T TIGR03719 441 VGQLSGGERNRVHLAKTLK----SGGNVLLLDEPTNDLDVETLRALEEALLEF 489 (552)
T ss_pred hhhCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 4578999999999998776 357899999999999 7777777777665
No 368
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.10 E-value=0.69 Score=51.28 Aligned_cols=48 Identities=4% Similarity=0.028 Sum_probs=21.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 712 SASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQ 759 (1034)
Q Consensus 712 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 759 (1034)
....+.+|+.+...+......+.+.....+..+..+.....+.++++.
T Consensus 349 fddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 349 FDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444444444433333333333333333
No 369
>PRK11281 hypothetical protein; Provisional
Probab=97.10 E-value=0.49 Score=57.51 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=10.1
Q ss_pred cCCCeeEeehhhh
Q 001670 994 TEAPFRAMDEFDV 1006 (1034)
Q Consensus 994 ~~~Pf~vlDEiD~ 1006 (1034)
.|.|++.|.+|..
T Consensus 1028 ~P~P~V~~~~fgd 1040 (1113)
T PRK11281 1028 EPEPQVFFLNFGA 1040 (1113)
T ss_pred CCCCEEEEEeccC
Confidence 6889988888843
No 370
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.09 E-value=0.00063 Score=77.77 Aligned_cols=47 Identities=23% Similarity=0.161 Sum_probs=37.2
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHh
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDF 1021 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~ 1021 (1034)
+..||||||.+++||..++ .+.++++|||+-.+| .++....++|..+
T Consensus 443 ~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 491 (556)
T PRK11819 443 VGVLSGGERNRLHLAKTLK----QGGNVLLLDEPTNDLDVETLRALEEALLEF 491 (556)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence 4578999999999987665 468899999999999 6777666666654
No 371
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.09 E-value=0.00065 Score=78.91 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
|.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 19 l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG 51 (635)
T PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51 (635)
T ss_pred EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 45667777776 889999999999999999863
No 372
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.09 E-value=0.00049 Score=68.80 Aligned_cols=22 Identities=36% Similarity=0.364 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q 001670 43 WVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 43 ~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+.+|+|||||||||++.+|.-
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G 47 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAG 47 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998863
No 373
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.08 E-value=0.00096 Score=61.90 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=45.9
Q ss_pred CCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 973 ~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
.||||++.+++|+..++.....+.|+++|||+..++ ..+......|.+.... ..++|++
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~~~vii~ 137 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVI 137 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEE
Confidence 489999999999999997666688999999999999 5555555556665443 4577765
No 374
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.07 E-value=0.65 Score=50.54 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 001670 431 CREIRSEIRELQ 442 (1034)
Q Consensus 431 ~~~l~~~l~~l~ 442 (1034)
...++.++.-|+
T Consensus 346 YeeIK~ELsiLk 357 (629)
T KOG0963|consen 346 YEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 375
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.07 E-value=0.52 Score=49.36 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 257 DVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKK 300 (1034)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1034)
.+...+..++.++..++.++.+....+..+...+..+...+..+
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443333333
No 376
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00057 Score=67.27 Aligned_cols=38 Identities=34% Similarity=0.559 Sum_probs=0.0
Q ss_pred EEEEEeccccccceeEcCCCeEEEEcCCCCCHHHHHHHHH
Q 001670 24 RVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 24 ~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~ai~ 63 (1034)
+...-|+.. +..+.+.+.+.+|+||||||||||+.+|.
T Consensus 7 ~~~~~~~~~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 7 EKRLPDFTL--KIDFDLNEEVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred eEecCCeee--CceEEEcceeEEEECCCCCCHHHHHHHHh
No 377
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.05 E-value=0.00064 Score=59.40 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=24.1
Q ss_pred eeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 37 QIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 37 ~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
.+...+| +-+|+||+||||||++.+++....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 3334443 789999999999999999987553
No 378
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.04 E-value=0.0011 Score=67.37 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=27.7
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.-.+
T Consensus 20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 45566677665 88999999999999999996555
No 379
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.00087 Score=76.36 Aligned_cols=47 Identities=21% Similarity=0.126 Sum_probs=39.4
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHh
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDF 1021 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~ 1021 (1034)
+..|||||+.+++||..++. +.++++|||+-++| .++....++|.++
T Consensus 436 ~~~LSgGq~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 484 (530)
T PRK15064 436 VKVLSGGEKGRMLFGKLMMQ----KPNVLVMDEPTNHMDMESIESLNMALEKY 484 (530)
T ss_pred ccccCHHHHHHHHHHHHHhc----CCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence 46789999999999987773 68899999999999 7777777777654
No 380
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0005 Score=62.26 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=25.5
Q ss_pred eeEcC---CCeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 37 QIELG---EWVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 37 ~i~f~---~~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
++.|. ..++.|.||||+||||++.-|...|-
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~ 53 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI 53 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHhcc
Confidence 45563 35999999999999999999988774
No 381
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.03 E-value=0.25 Score=44.95 Aligned_cols=7 Identities=0% Similarity=-0.012 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001670 429 KKCREIR 435 (1034)
Q Consensus 429 ~~~~~l~ 435 (1034)
.+++.++
T Consensus 179 ~e~s~LE 185 (193)
T PF14662_consen 179 LEKSRLE 185 (193)
T ss_pred HHHHHHH
Confidence 3333333
No 382
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.00055 Score=77.63 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=27.6
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHc
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35566777775 88999999999999999998443
No 383
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.02 E-value=1.2 Score=52.66 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=7.2
Q ss_pred eEEEEEecccc
Q 001670 23 TRVRLENFMCH 33 (1034)
Q Consensus 23 ~~i~l~nf~~~ 33 (1034)
-.|+|..||+-
T Consensus 212 GHikLADFGsC 222 (1317)
T KOG0612|consen 212 GHIKLADFGSC 222 (1317)
T ss_pred CcEeeccchhH
Confidence 45677777763
No 384
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.00057 Score=71.25 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 42 L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~ 73 (320)
T PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFN 73 (320)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 385
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.01 E-value=0.001 Score=67.19 Aligned_cols=61 Identities=25% Similarity=0.347 Sum_probs=48.0
Q ss_pred CCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 970 ~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
.+..||||++.+++||..+++....|+|+++|||+.++| .++......|.+... .+++|++
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~---~~~ii~~ 217 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD---GAQFITT 217 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEE
Confidence 456799999999999999987656788999999999999 666666776766532 4566654
No 386
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.00 E-value=0.00085 Score=75.83 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred CceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 18 ~~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+..|... +...+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 51 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLT 51 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh
No 387
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.00 E-value=0.0011 Score=69.44 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=0.0
Q ss_pred ceeEeEEEEEe------ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 19 AGTITRVRLEN------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 19 ~~~i~~i~l~n------f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
|..+..|...- ..-+.+..+.+.+| +.+|+||||||||||+..|.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~ 52 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 52 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 388
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.00085 Score=76.11 Aligned_cols=57 Identities=16% Similarity=0.002 Sum_probs=43.8
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..||||||.+++||..|+. +.++++|||.-++| .++...+++|.+.+. .+.+ +|+|
T Consensus 407 ~~~LSgGq~qrv~lAral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~t-vi~v 465 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCC----CPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKV-ILMV 465 (510)
T ss_pred cccCChHHHHHHHHHHHHhc----CCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCE-EEEE
Confidence 45789999999999987763 46899999999999 777777777776653 3333 5544
No 389
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00092 Score=75.68 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=43.7
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..||||||.+++||..++. +.++++|||+-++| .++...+++|...+. .+.+ +|+|
T Consensus 403 ~~~LSgG~kqrv~lA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~t-vi~~ 461 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLL----NPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVA-IIVI 461 (506)
T ss_pred cccCCHHHHHHHHHHHHHhh----CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCE-EEEE
Confidence 45789999999999988873 57899999999999 777777777776554 3333 4444
No 390
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.98 E-value=0.88 Score=50.53 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 001670 901 KVRACREALDS 911 (1034)
Q Consensus 901 ~i~~l~~~l~~ 911 (1034)
.+..++++++.
T Consensus 615 k~~k~eeelqe 625 (1265)
T KOG0976|consen 615 KLDKLEEELQE 625 (1265)
T ss_pred hhHHHHHHHHH
Confidence 34444444443
No 391
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.97 E-value=0.0012 Score=66.68 Aligned_cols=60 Identities=28% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..|||||+.+++||..++..-+.|.++++|||+.++| ..+...+.+|.+.. ...++|+|
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~---~g~~ii~i 225 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF---KGSQFIVV 225 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc---CCCEEEEE
Confidence 56799999999999998886556778999999999999 56666666666653 24578776
No 392
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.96 E-value=1.6 Score=53.14 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 001670 415 NEIRRISDEIEDYDKKCREIRSEI 438 (1034)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~~l~~~l 438 (1034)
.+....+..+..+......++.++
T Consensus 286 ~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 286 SQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444443
No 393
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.96 E-value=0.0026 Score=74.88 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 888 ILRKQQTYQAFREKVRACREALDSRWGKFQRNATLLKR 925 (1034)
Q Consensus 888 ~~~l~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~i~~ 925 (1034)
+..+..++..+...+..|.+.+......|+..+..++.
T Consensus 608 ~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llG 645 (722)
T PF05557_consen 608 IAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLG 645 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555566667777777777777788888888874
No 394
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.95 E-value=0.0012 Score=69.22 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCCceeEeEEEEEe------ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 15 QRSGAGTITRVRLEN------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 15 ~~~~~~~i~~i~l~n------f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
...++..+..|.+.- +.-+.+..+.+.+| +.+|+|+||||||||+.+|.
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~ 63 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALM 63 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHH
No 395
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.0011 Score=75.51 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=25.5
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+.|.+| +++|+||||||||||+.+|+
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLV 366 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556677665 89999999999999999987
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=96.94 E-value=0.00056 Score=60.05 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEcCCCCCHHHHHHHHHHHcCCCc
Q 001670 46 FITGQNGSGKSAILTALCIAFGCRA 70 (1034)
Q Consensus 46 ~I~G~NGsGKSti~~ai~~~Lg~~~ 70 (1034)
-++||||+||||++.++.-.+-+..
T Consensus 29 HliGPNGaGKSTLLA~lAGm~~~sG 53 (248)
T COG4138 29 HLVGPNGAGKSTLLARMAGMTSGSG 53 (248)
T ss_pred EEECCCCccHHHHHHHHhCCCCCCc
Confidence 3679999999999999876654433
No 397
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.45 Score=46.37 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQD 699 (1034)
Q Consensus 637 ~~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 699 (1034)
-+..+.+++.+...++.+++.+..++..+..++...+.++.....++..++.++..++..+.+
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655555555555555555555555555555555555555554443
No 398
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.93 E-value=0.00063 Score=67.28 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=0.0
Q ss_pred eEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 38 IELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 38 i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.|.+| +.+|+||||||||||+.+|.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~ 27 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAIL 27 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHh
No 399
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.93 E-value=0.0013 Score=69.55 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=0.0
Q ss_pred eeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 20 ~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
..++.|... ++..+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 52 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIA 52 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
No 400
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.00098 Score=59.88 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=23.8
Q ss_pred eeEcCC-CeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 37 QIELGE-WVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 37 ~i~f~~-~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.+...+ .+.+|+||+||||||++.-|+-..
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 344455 489999999999999999887654
No 401
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.92 E-value=0.00085 Score=66.28 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=0.0
Q ss_pred EEEEecccc--ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 25 VRLENFMCH--SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 25 i~l~nf~~~--~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
|.+.|...+ .+..+.+.+| +.+|+||||||||||+-++...-|
T Consensus 1 ~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g 46 (226)
T cd03270 1 IIVRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEG 46 (226)
T ss_pred CEeccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHH
No 402
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.92 E-value=0.0008 Score=59.80 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=25.4
Q ss_pred ccccceeEcC-----CCeEEEEcCCCCCHHHHHHHHHH
Q 001670 32 CHSSLQIELG-----EWVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 32 ~~~~~~i~f~-----~~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+|+...+.|+ ..+++|+||+||||||++.-|.-
T Consensus 10 ~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 10 SYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred eeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHh
Confidence 3665555553 25889999999999999998864
No 403
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.91 E-value=0.0012 Score=74.79 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
...++.|... +...+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~ 48 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILS 48 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHh
No 404
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.0013 Score=69.00 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCceeEeEEEEE--e----ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 17 SGAGTITRVRLE--N----FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 17 ~~~~~i~~i~l~--n----f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+..|.+. + +.-+++..+.+.+| +.+|+|+|||||||++.+|.
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~ 54 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIM 54 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHH
No 405
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=96.91 E-value=0.00075 Score=70.51 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=22.5
Q ss_pred ceeEcCCCeE-EEEcCCCCCHHHHHHHHH
Q 001670 36 LQIELGEWVN-FITGQNGSGKSAILTALC 63 (1034)
Q Consensus 36 ~~i~f~~~~~-~I~G~NGsGKSti~~ai~ 63 (1034)
.++..+||+. +|+||||||||+|+.-|.
T Consensus 501 Ltf~i~~G~hLLItGPNGCGKSSLfRILg 529 (728)
T KOG0064|consen 501 LTFQIEPGMHLLITGPNGCGKSSLFRILG 529 (728)
T ss_pred eeEEecCCceEEEECCCCccHHHHHHHHh
Confidence 3456678876 599999999999998764
No 406
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.90 E-value=0.0011 Score=75.70 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 338 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 34566777775 899999999999999999963
No 407
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.90 E-value=0.00076 Score=71.43 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=0.0
Q ss_pred eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 29 NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 29 nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
++..+.+..+++.+| +.+|+|||||||||++.+|.
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~ 71 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVN 71 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
No 408
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=1.1 Score=50.40 Aligned_cols=290 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHhHH
Q 001670 180 KFFFKATLLQQVNDLLQS-IYNHLNKGDALVLELEATIK-PTEKELSELQRKIRNMEHVEEITQD-LQRLKKKLAWSWVY 256 (1034)
Q Consensus 180 ~~~~~~~~l~~~~~~l~~-~~~~l~~~~~~l~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 256 (1034)
.....+..+..+...+.. ....+..+....++....+. .+..+++.+..++..+.+.+.-... ...-........+.
T Consensus 357 ~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~ 436 (698)
T KOG0978|consen 357 RESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVE 436 (698)
T ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 257 DVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELE 336 (1034)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1034)
.....+.........+...+...-..++..+.+...+-.++.+....--.+..+..........+..+...+...+..+.
T Consensus 437 ~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~ 516 (698)
T KOG0978|consen 437 ELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLK 516 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001670 337 GELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNE 416 (1034)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 416 (1034)
.........+..+..+...+......+..++ ......+........++...+..+..........+..++..+.+...+
T Consensus 517 ~~~~~~~~~i~~leeq~~~lt~~~~~l~~el-~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~e 595 (698)
T KOG0978|consen 517 ASVDKLELKIGKLEEQERGLTSNESKLIKEL-TTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELE 595 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhhccCCCCCCc
Q 001670 417 IRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPI 476 (1034)
Q Consensus 417 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 476 (1034)
+.........++.++..+...+..+....... .....+...+..+.+.+..+++
T Consensus 596 le~~~~k~~rleEE~e~L~~kle~~k~~~~~~------s~d~~L~EElk~yK~~LkCs~C 649 (698)
T KOG0978|consen 596 LEIEKFKRKRLEEELERLKRKLERLKKEESGA------SADEVLAEELKEYKELLKCSVC 649 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccc------cccHHHHHHHHHHHhceeCCCc
No 409
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.89 E-value=0.0013 Score=75.34 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=32.6
Q ss_pred ceeEeEEEEE--eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 19 ~~~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+..|... +-..+.+..+.+.+| +.+|+||||||||||+.+|+-
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4555555543 111245566777775 889999999999999999973
No 410
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.0013 Score=74.42 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=43.1
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..||||||.+++||..++ .+.++++|||.-.+| .++...+++|.+.+.. +.+ +|+|
T Consensus 394 ~~~LSgGq~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~t-viiv 452 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLS----EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVA-VLFV 452 (501)
T ss_pred cccCCHHHHHHHHHHHHHc----cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCE-EEEE
Confidence 4578999999999998776 346899999999999 7777777777666443 333 4444
No 411
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=1.1 Score=50.18 Aligned_cols=57 Identities=7% Similarity=0.048 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001670 649 LHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFA 705 (1034)
Q Consensus 649 ~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 705 (1034)
..+..-+..+..++..+.....+++.+.+.+..++.........+..++.-++.++.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333334444444444444444444444444444444444444555554444443
No 412
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.00087 Score=70.11 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=25.0
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 99 ~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~ 129 (329)
T PRK14257 99 HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN 129 (329)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4455666664 89999999999999999986
No 413
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.001 Score=70.71 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=0.0
Q ss_pred Eecccc-ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 28 ENFMCH-SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 28 ~nf~~~-~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
..|+.+ .+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 8 k~~~~~~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ia 45 (352)
T PRK11144 8 QQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAIS 45 (352)
T ss_pred EEeCCEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHh
No 414
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.86 E-value=0.0014 Score=76.29 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=26.4
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
|.+.++.+.+| +.+|+||||||||||+..|+-
T Consensus 335 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 367 (635)
T PRK11147 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367 (635)
T ss_pred EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 34556677776 889999999999999999874
No 415
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.86 E-value=0.00093 Score=71.11 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=0.0
Q ss_pred cceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia 44 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA 44 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHh
No 416
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.84 E-value=0.82 Score=47.94 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.7
Q ss_pred HHHHHhhcCCCc
Q 001670 143 LLELIDHFNIDV 154 (1034)
Q Consensus 143 ~~~~~~~~~i~~ 154 (1034)
+.+++...||..
T Consensus 16 L~~FL~~~~I~F 27 (325)
T PF08317_consen 16 LQDFLNMTGIRF 27 (325)
T ss_pred HHHHHHHhCcee
Confidence 677777777764
No 417
>PRK11281 hypothetical protein; Provisional
Probab=96.84 E-value=1.4 Score=53.81 Aligned_cols=13 Identities=0% Similarity=-0.146 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHhh
Q 001670 1010 SFYINYVFSIDFS 1022 (1034)
Q Consensus 1010 ~~~~~~~~l~~~~ 1022 (1034)
.-..+.++|.+.+
T Consensus 1007 Di~~v~~iL~eaa 1019 (1113)
T PRK11281 1007 DLEKVRELLLQAA 1019 (1113)
T ss_pred CHHHHHHHHHHHH
Confidence 3344444444443
No 418
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.83 E-value=0.0009 Score=71.51 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~ 75 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN 75 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHH
No 419
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.0029 Score=64.81 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=46.1
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
...||||++.+++||+.+++..+.+.|+++|||++++| ..+....++|...+. ..++|+|
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~---~~tii~i 229 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR---SHQVLCI 229 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEE
Confidence 45799999999999987776555788999999999999 566666666665432 3567665
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.82 E-value=0.0011 Score=64.44 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=26.1
Q ss_pred ccccceeEcCC---CeEEEEcCCCCCHHHHHHHHHH
Q 001670 32 CHSSLQIELGE---WVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 32 ~~~~~~i~f~~---~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.|-+-++.+++ ++.+|+||||+||||++..|..
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 35455666654 5789999999999999999974
No 421
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.81 E-value=0.00096 Score=66.98 Aligned_cols=24 Identities=42% Similarity=0.403 Sum_probs=0.0
Q ss_pred cCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 40 LGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 40 f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.|| +.+|+||||||||||+.+|.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~ 47 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILA 47 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHh
No 422
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0017 Score=75.25 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=25.8
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 360 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556677665 889999999999999999873
No 423
>PLN03073 ABC transporter F family; Provisional
Probab=96.80 E-value=0.0021 Score=74.67 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=36.6
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHH
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSID 1020 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~ 1020 (1034)
+..||||||.+++||..++ .+.|+++|||+-++| .++...+..|..
T Consensus 625 ~~~LSgGqkqRvaLAraL~----~~p~lLLLDEPT~~LD~~s~~~l~~~L~~ 672 (718)
T PLN03073 625 MYTLSGGQKSRVAFAKITF----KKPHILLLDEPSNHLDLDAVEALIQGLVL 672 (718)
T ss_pred ccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 4679999999999997776 357899999999999 555555555544
No 424
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.79 E-value=0.0014 Score=65.29 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=24.2
Q ss_pred ccceeEcCC-CeEEEEcCCCCCHHHHHHHHHH
Q 001670 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
.+.++.|.. -+++|+|++|||||||+..+.+
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~ 43 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLY 43 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHHHH
Confidence 455666654 4899999999999999986643
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0013 Score=76.19 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.1
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~ 64 (1034)
|.+..+.|.+| +.+|+||||||||||+..|.-
T Consensus 17 l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G 49 (638)
T PRK10636 17 LDNATATINPGQKVGLVGKNGCGKSTLLALLKN 49 (638)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667778775 899999999999999999874
No 426
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0025 Score=60.30 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCCCCCCceeEeEEEEEecccc--ccceeEcCCCeE-EEEcCCCCCHHHHHHHHH
Q 001670 11 GYGPQRSGAGTITRVRLENFMCH--SSLQIELGEWVN-FITGQNGSGKSAILTALC 63 (1034)
Q Consensus 11 ~~~~~~~~~~~i~~i~l~nf~~~--~~~~i~f~~~~~-~I~G~NGsGKSti~~ai~ 63 (1034)
+......+.--++.+.+.-.+.- ++.+....||=+ +|+|||||||||++.-+.
T Consensus 23 ~~~~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 23 HPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred CCCCCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHh
No 427
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.74 E-value=0.0012 Score=69.60 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~ 40 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN 40 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHh
No 428
>PLN03073 ABC transporter F family; Provisional
Probab=96.73 E-value=0.002 Score=74.87 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=27.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~ 65 (1034)
|.+..+.|.+| +.+|+||||||||||+.+|.-.
T Consensus 525 l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 525 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45556777776 8999999999999999998743
No 429
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.72 E-value=0.002 Score=64.47 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=40.2
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
+..|||||+.+++||..++. +.++++|||.-++| .++.....+|.+.+.
T Consensus 113 ~~~LSgGe~qrv~iaraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 163 (246)
T cd03237 113 VPELSGGELQRVAIAACLSK----DADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163 (246)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 45789999999999987763 57899999999999 677777777776654
No 430
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=96.71 E-value=0.0026 Score=66.66 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCCceeEeEEEEE---------------eccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 13 GPQRSGAGTITRVRLE---------------NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 13 ~~~~~~~~~i~~i~l~---------------nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+....++..|..|.+. .+.-+.+..+.+.+| +.+|+|+||||||||+.+|.
T Consensus 2 ~~~~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~ 68 (331)
T PRK15079 2 TEGKKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAII 68 (331)
T ss_pred CCCCCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHH
No 431
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0029 Score=66.31 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCceeEeEEEEEe------------ccccccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 15 QRSGAGTITRVRLEN------------FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 15 ~~~~~~~i~~i~l~n------------f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
....+..+..|.+.- ..-+.+..+.+.+| +.+|+|+||||||||+.+|.
T Consensus 1 ~~~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~ 62 (327)
T PRK11308 1 SQQPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT 62 (327)
T ss_pred CCCceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHH
No 432
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.0016 Score=61.01 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=22.6
Q ss_pred eEcCC-CeEEEEcCCCCCHHHHHHHHHH
Q 001670 38 IELGE-WVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 38 i~f~~-~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+.+ .+.+|+||+|||||||+.+|..
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 34444 4889999999999999999987
No 433
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.69 E-value=1.9 Score=50.08 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001670 351 NRVKGLEQQVHDIQE 365 (1034)
Q Consensus 351 ~~~~~l~~~~~~~~~ 365 (1034)
..+..|+.+.+.++.
T Consensus 190 kkiakLEaEC~rLr~ 204 (769)
T PF05911_consen 190 KKIAKLEAECQRLRA 204 (769)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666654
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=96.67 E-value=0.046 Score=57.95 Aligned_cols=43 Identities=30% Similarity=0.280 Sum_probs=34.4
Q ss_pred CCCcccchHHHHHHHHH----hhh-hcCCCeeEeehhhhhh-hhHHHHH
Q 001670 973 GLSGGERSFSTLCFALA----LHE-MTEAPFRAMDEFDVFM-VSFYINY 1015 (1034)
Q Consensus 973 ~lSGGEks~~~lall~a----l~~-~~~~Pf~vlDEiD~~~-~~~~~~~ 1015 (1034)
.+|+||+-+++||+.+| +.. ....|+++|||+-+.| ..++..+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l 311 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGAL 311 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHH
Confidence 46999999999999998 333 2568999999999999 6555444
No 435
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.67 E-value=0.0018 Score=61.36 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=23.9
Q ss_pred cceeEcCCC-eEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 35 SLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
+..+++.+| .-.|+|+|||||||++.-|.-++-
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 334444443 556999999999999998876654
No 436
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.67 E-value=0.038 Score=58.75 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=40.6
Q ss_pred CCCCcccchHHHHHHHHHhhh-----hcCCCeeEeehhhhhh-hhHH-HHHHHHHHhhcCCCCceEEEe
Q 001670 972 RGLSGGERSFSTLCFALALHE-----MTEAPFRAMDEFDVFM-VSFY-INYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~-----~~~~Pf~vlDEiD~~~-~~~~-~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..+|+||+-.++||+.+|-.. ....|+++||||-+.| ..++ ..+++|... ..|+|+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~-----~~qv~it 337 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL-----GVQVFVT 337 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc-----CCEEEEE
Confidence 356999999999999999633 2468999999999999 5444 334333221 3477664
No 437
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.66 E-value=0.0029 Score=61.56 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=47.9
Q ss_pred CCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 970 ~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
.+..||||++.+++||..+++..+.|.|+++|||+.++| .++.....+|.+.+ ....+|+|
T Consensus 124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~---~~~~~iiv 186 (212)
T cd03274 124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT---KNAQFIVI 186 (212)
T ss_pred chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc---CCCEEEEE
Confidence 356899999999999999987666788999999999999 67776667676643 23566665
No 438
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.66 E-value=0.0025 Score=65.63 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=46.5
Q ss_pred CCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh-hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM-VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 970 ~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~-~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+++.|||||..++|||-.+ ...+-||+|||.-.+| +..|+.+.-++...+.. ..-+|+|
T Consensus 210 ~v~~LSGGELQr~aIaa~l----~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVV 269 (591)
T COG1245 210 DVSELSGGELQRVAIAAAL----LRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVV 269 (591)
T ss_pred hhhhcCchHHHHHHHHHHH----hccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEE
Confidence 4678999999999998443 4668899999999999 88888887788777654 4455554
No 439
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.66 E-value=0.0036 Score=55.83 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh-hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM-VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~-~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
...||||||.++|||--| +.+-|+.+|||.-+++ -.-|.-|-.|+.-.|.....=+++|
T Consensus 127 P~~LSGGqRQRvALARcl----vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmV 186 (231)
T COG3840 127 PGELSGGQRQRVALARCL----VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMV 186 (231)
T ss_pred ccccCchHHHHHHHHHHH----hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEE
Confidence 467999999999998654 5778999999999999 5555555556666676554444444
No 440
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0019 Score=66.30 Aligned_cols=30 Identities=17% Similarity=0.453 Sum_probs=24.1
Q ss_pred ccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
++..+++.+| +.++.||+||||||+|.+|.
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455566665 78899999999999999886
No 441
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.65 E-value=0.0018 Score=59.53 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 43 WVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 43 ~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.+..|+|.||+||||++.+|.--+
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCcc
Confidence 477888999999999999997544
No 442
>PRK00064 recF recombination protein F; Reviewed
Probab=96.65 E-value=0.067 Score=57.10 Aligned_cols=45 Identities=22% Similarity=0.162 Sum_probs=36.0
Q ss_pred CCCCCcccchHHHHHHHHHhhh-----hcCCCeeEeehhhhhh-hhHHHHH
Q 001670 971 TRGLSGGERSFSTLCFALALHE-----MTEAPFRAMDEFDVFM-VSFYINY 1015 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~-----~~~~Pf~vlDEiD~~~-~~~~~~~ 1015 (1034)
...+|+||+-.++||+.+|-.. ..+.|+++|||+-+.+ ..++..+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l 321 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAAL 321 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHH
Confidence 4568999999999999998533 4578999999999999 5544433
No 443
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.63 E-value=1.8 Score=49.15 Aligned_cols=8 Identities=50% Similarity=0.791 Sum_probs=3.4
Q ss_pred CCe-eEeeh
Q 001670 996 APF-RAMDE 1003 (1034)
Q Consensus 996 ~Pf-~vlDE 1003 (1034)
.|| |==||
T Consensus 600 ipffy~~~~ 608 (617)
T PF15070_consen 600 IPFFYRADE 608 (617)
T ss_pred ccceeeccc
Confidence 353 43444
No 444
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.62 E-value=0.0032 Score=61.96 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=40.7
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
+..|||||+.+++||..++ .+.|+++|||+-++| .++....++|.+.+.
T Consensus 130 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (213)
T cd03235 130 IGELSGGQQQRVLLARALV----QDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180 (213)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 3578999999999998776 367899999999999 677777777777654
No 445
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.62 E-value=1.5 Score=47.95 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=3.9
Q ss_pred HHHHHHhhc
Q 001670 142 ELLELIDHF 150 (1034)
Q Consensus 142 ~~~~~~~~~ 150 (1034)
.+..++..|
T Consensus 63 ~~~~llK~y 71 (629)
T KOG0963|consen 63 MVNPLLKSY 71 (629)
T ss_pred HHHHHHHHH
Confidence 344444444
No 446
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.62 E-value=0.0027 Score=55.63 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=40.3
Q ss_pred CCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEeC
Q 001670 970 DTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLVW 1034 (1034)
Q Consensus 970 ~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i~ 1034 (1034)
++..||||||.++||+--+- ++| -+++|||+-++| .|.+..-.|+.+..+ ..++-++|
T Consensus 130 ~it~lSGGE~QriAliR~Lq---~~P-~ILLLDE~TsALD~~nkr~ie~mi~~~v~---~q~vAv~W 189 (223)
T COG4619 130 NITELSGGEKQRIALIRNLQ---FMP-KILLLDEITSALDESNKRNIEEMIHRYVR---EQNVAVLW 189 (223)
T ss_pred hhhhccchHHHHHHHHHHhh---cCC-ceEEecCchhhcChhhHHHHHHHHHHHhh---hhceEEEE
Confidence 36789999999998874332 232 289999999999 566666666666543 45556666
No 447
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.62 E-value=0.0021 Score=62.66 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=25.3
Q ss_pred cccccceeEc--CCCeEEEEcCCCCCHHHHHHHHHH
Q 001670 31 MCHSSLQIEL--GEWVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 31 ~~~~~~~i~f--~~~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
..|-...+.| ++.+.+|+|||||||||++..|..
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHH
Confidence 3443334444 446899999999999999999963
No 448
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.002 Score=62.88 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=25.8
Q ss_pred ccceeEcCC-CeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
.+..+++.. .+.++.|||||||||++..|.-...
T Consensus 19 ~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~ 53 (345)
T COG1118 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET 53 (345)
T ss_pred ccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC
Confidence 344445533 5889999999999999999976554
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.59 E-value=0.0021 Score=61.24 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCC
Q 001670 43 WVNFITGQNGSGKSAILTALCIAFGC 68 (1034)
Q Consensus 43 ~~~~I~G~NGsGKSti~~ai~~~Lg~ 68 (1034)
.+.+|+||+||||||++.+|.-.++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 36789999999999999999887764
No 450
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.57 E-value=0.0027 Score=63.14 Aligned_cols=50 Identities=16% Similarity=0.004 Sum_probs=41.0
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcC
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGY 1024 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~ 1024 (1034)
+..|||||+.+++||..++. +.|+++|||+.++| .++....++|.+.+..
T Consensus 112 ~~~LSgG~~qrv~la~al~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 112 PGQLSGGMKQRVAIARALSI----RPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred hhhCCHHHHHHHHHHHHHHc----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 35689999999999987774 46899999999999 7777777777776543
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.57 E-value=0.0016 Score=62.15 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 43 WVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 43 ~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
.+.+|+||||||||||+..|.-.++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3678999999999999999966554
No 452
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.52 E-value=0.0027 Score=61.01 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=23.6
Q ss_pred cceeEcCC-CeEEEEcCCCCCHHHHHHHHHH
Q 001670 35 SLQIELGE-WVNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 35 ~~~i~f~~-~~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+..+...+ .+.+|+||||+||||++.+|..
T Consensus 21 ~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 21 DIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred eeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33444444 6899999999999999999863
No 453
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0029 Score=62.23 Aligned_cols=57 Identities=21% Similarity=0.016 Sum_probs=43.5
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..|||||+.+++||..++. +.|+++|||+-++| .++...+++|.+.+...+ .-+|+|
T Consensus 129 ~~LSgG~~qrl~la~al~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~ 187 (213)
T cd03259 129 HELSGGQQQRVALARALAR----EPSLLLLDEPLSALDAKLREELREELKELQRELG-ITTIYV 187 (213)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEE
Confidence 5689999999999987763 57899999999999 777777777776554223 344444
No 454
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.0044 Score=56.94 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=42.9
Q ss_pred cCCCCCCcccchHHHHHHHHH-hhhhcCCC-eeEeehhhhhh-hhH-HHHHHHHHHhhcC
Q 001670 969 RDTRGLSGGERSFSTLCFALA-LHEMTEAP-FRAMDEFDVFM-VSF-YINYVFSIDFSGY 1024 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~a-l~~~~~~P-f~vlDEiD~~~-~~~-~~~~~~l~~~~~~ 1024 (1034)
++...|||||+.++.||=.+| +|...|.| .++|||.-++| ..+ -..+.+.-++++.
T Consensus 131 R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~ 190 (259)
T COG4559 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190 (259)
T ss_pred cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc
Confidence 446789999999999999987 78888888 89999999999 433 3344444454443
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.51 E-value=0.0021 Score=61.84 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 42 EWVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 42 ~~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
.|+.+|+||+||||||++.+|...+.
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 37899999999999999999765553
No 456
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.50 E-value=0.0034 Score=63.34 Aligned_cols=58 Identities=19% Similarity=0.037 Sum_probs=44.1
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..|||||+.+++||..++. +.|+++|||+-++| .++....++|.+.+...+ .-+|+|
T Consensus 131 ~~~LSgGqkqrl~laraL~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviiv 190 (257)
T PRK11247 131 PAALSGGQKQRVALARALIH----RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLV 190 (257)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEE
Confidence 35789999999999988774 57999999999999 777777777776544333 334443
No 457
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.50 E-value=0.0023 Score=61.03 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 42 EWVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 42 ~~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
.++.+|+|||||||||++.+|.-.+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678999999999999999987554
No 458
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.50 E-value=1.1 Score=44.92 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 324 SISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQ 364 (1034)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (1034)
++.....++..+...+..........+.+|..+..++-.++
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433
No 459
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.0041 Score=62.82 Aligned_cols=41 Identities=29% Similarity=0.406 Sum_probs=29.3
Q ss_pred EeEEEEEeccc-cccceeEcCC--------CeEEEEcCCCCCHHHHHHHH
Q 001670 22 ITRVRLENFMC-HSSLQIELGE--------WVNFITGQNGSGKSAILTAL 62 (1034)
Q Consensus 22 i~~i~l~nf~~-~~~~~i~f~~--------~~~~I~G~NGsGKSti~~ai 62 (1034)
.++|++.|-.- |.+..+..+| .+.+|+|.|||||||+.--+
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LL 369 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLL 369 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHH
Confidence 78899988652 3333344455 36789999999999986543
No 460
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0036 Score=61.93 Aligned_cols=48 Identities=25% Similarity=0.131 Sum_probs=39.6
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
..|||||+.+++||..++. +.|+++|||+-++| .++...+.+|.+...
T Consensus 130 ~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~ 179 (220)
T cd03293 130 HQLSGGMRQRVALARALAV----DPDVLLLDEPFSALDALTREQLQEELLDIWR 179 (220)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999987774 46899999999999 777777777766543
No 461
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.47 E-value=0.004 Score=62.05 Aligned_cols=49 Identities=27% Similarity=0.209 Sum_probs=40.6
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
+..|||||+.+++||..++. +.|+++|||+.++| .++...+++|.+.+.
T Consensus 139 ~~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 189 (227)
T cd03260 139 ALGLSGGQQQRLCLARALAN----EPEVLLLDEPTSALDPISTAKIEELIAELKK 189 (227)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhh
Confidence 35789999999999977763 56899999999999 778877887877643
No 462
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.47 E-value=0.0043 Score=60.97 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=39.7
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
..|||||+.+++||..|+. +.|+++|||+-.+| .++...+.+|.+.+.
T Consensus 133 ~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 182 (211)
T cd03225 133 FTLSGGQKQRVAIAGVLAM----DPDILLLDEPTAGLDPAGRRELLELLKKLKA 182 (211)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 5789999999999987763 56899999999999 677777777776654
No 463
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.47 E-value=1.4 Score=45.84 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001670 849 PEQLSAQVNRLNQRLKH 865 (1034)
Q Consensus 849 ~~~l~~~l~~l~~~l~~ 865 (1034)
+.++...+..+..++..
T Consensus 496 i~El~~~l~~~e~~L~~ 512 (622)
T COG5185 496 INELTQILEKLELELSE 512 (622)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 464
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.46 E-value=0.0041 Score=59.80 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=43.1
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..|||||+.+++||..|+ .+.|+++|||.-++| .++....++|.+... . ..-+|+|
T Consensus 126 ~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tili~ 183 (190)
T TIGR01166 126 HCLSGGEKKRVAIAGAVA----MRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-E-GMTVVIS 183 (190)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEE
Confidence 568999999999998776 356899999999999 777777777777643 2 3344544
No 465
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.45 E-value=0.0038 Score=61.95 Aligned_cols=48 Identities=23% Similarity=0.238 Sum_probs=39.8
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
..|||||+.+++||..++. +.|+++|||+-++| .++....++|.+.+.
T Consensus 140 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 189 (221)
T TIGR02211 140 SELSGGERQRVAIARALVN----QPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189 (221)
T ss_pred hhCCHHHHHHHHHHHHHhC----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5789999999999987773 46899999999999 677777777776544
No 466
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.44 E-value=0.0044 Score=61.28 Aligned_cols=57 Identities=18% Similarity=0.022 Sum_probs=43.6
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..|||||+.+++||..++. +.++++|||+..+| .++....+.|.+.+. . ...+|+|
T Consensus 140 ~~~LSgG~~qrv~laral~~----~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~-~~tiii~ 198 (224)
T cd03220 140 VKTYSSGMKARLAFAIATAL----EPDILLIDEVLAVGDAAFQEKCQRRLRELLK-Q-GKTVILV 198 (224)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEE
Confidence 35799999999999877763 56899999999999 677777777766543 2 3455554
No 467
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.42 E-value=2.4 Score=48.16 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001670 239 ITQDLQRLK 247 (1034)
Q Consensus 239 ~~~~~~~~~ 247 (1034)
+...+..+.
T Consensus 55 LE~sL~eLk 63 (617)
T PF15070_consen 55 LERSLSELK 63 (617)
T ss_pred HHHHHHHHH
Confidence 333333333
No 468
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.41 E-value=0.0046 Score=60.78 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=43.9
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..|||||+.+++||..++. +.|+++|||+.++| .++...+++|.+..... ...+|+|
T Consensus 127 ~~LS~G~~qrl~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tii~v 185 (213)
T TIGR01277 127 EQLSGGQRQRVALARCLVR----PNPILLLDEPFSALDPLLREEMLALVKQLCSER-QRTLLMV 185 (213)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 4689999999999988773 56899999999999 77777777777765422 3455554
No 469
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.39 E-value=0.0025 Score=60.68 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 001670 44 VNFITGQNGSGKSAILTALCI 64 (1034)
Q Consensus 44 ~~~I~G~NGsGKSti~~ai~~ 64 (1034)
+.+|+||||+||||++.+|..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999984
No 470
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0057 Score=59.46 Aligned_cols=51 Identities=24% Similarity=0.176 Sum_probs=38.8
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
+.+..|||||++++-||-.|| .+..+++|||.-+|+ .++...+.+|.+...
T Consensus 135 r~i~~LSGGQ~QRV~lARAL~----~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 135 RQIGELSGGQKQRVLLARALA----QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred CcccccCcHHHHHHHHHHHhc----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 347889999999999997776 457799999999999 555555555555433
No 471
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.39 E-value=0.0043 Score=62.04 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..|||||+.+++||..++. +.|+++|||+.++| .++....++|.+.....+ .-+|+|
T Consensus 144 ~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~ 202 (233)
T PRK11629 144 SELSGGERQRVAIARALVN----NPRLVLADEPTGNLDARNADSIFQLLGELNRLQG-TAFLVV 202 (233)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5689999999999987774 46899999999999 777777777776543222 344443
No 472
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.39 E-value=0.0039 Score=61.07 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=43.3
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..|||||+.+++||..++. +.|+++|||+.++| .++.....+|.+... . ..-+|+|
T Consensus 124 ~~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~ 182 (208)
T cd03268 124 VKGFSLGMKQRLGIALALLG----NPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLIS 182 (208)
T ss_pred HhhCCHHHHHHHHHHHHHhc----CCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEE
Confidence 35789999999999987773 46899999999999 677777777776543 2 2345554
No 473
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.005 Score=60.52 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=39.6
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
..|||||+.+++||..++ .+.|+++|||+.++| .++.....+|.+.+.
T Consensus 127 ~~LS~G~~qrv~ia~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 127 GELSGGERQRVALARVLV----RDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 468999999999998887 356899999999999 677777777766544
No 474
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.37 E-value=0.0043 Score=62.20 Aligned_cols=57 Identities=19% Similarity=0.077 Sum_probs=44.3
Q ss_pred CCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 972 RGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 972 ~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..|||||+.+++||..++. +.|+++|||+.++| .++....++|.+.+...+. -+|+|
T Consensus 131 ~~LS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~-tiii~ 189 (236)
T TIGR03864 131 RELNGGHRRRVEIARALLH----RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGL-SVLWA 189 (236)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCC-EEEEE
Confidence 4789999999999988873 57999999999999 7777777878776543333 35544
No 475
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.36 E-value=0.0063 Score=59.49 Aligned_cols=54 Identities=28% Similarity=0.252 Sum_probs=43.1
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCC
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVP 1026 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~ 1026 (1034)
+.+..||||||.++.||-.+| ..+|+.+|||.-.+| .+..-.++++.+++...+
T Consensus 134 r~~~~LSGGerQrv~iArALa----Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~ 189 (258)
T COG1120 134 RPVDELSGGERQRVLIARALA----QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG 189 (258)
T ss_pred CcccccChhHHHHHHHHHHHh----cCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC
Confidence 447889999999999997776 458999999999999 666667777777664433
No 476
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0047 Score=60.64 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=38.8
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhh
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFS 1022 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~ 1022 (1034)
+..|||||+.+++||..++. +.|+++|||+..+| .++....++|.+.+
T Consensus 126 ~~~LS~G~~qrl~la~al~~----~p~~lllDEP~~~LD~~~~~~~~~~l~~~~ 175 (210)
T cd03269 126 VEELSKGNQQKVQFIAAVIH----DPELLILDEPFSGLDPVNVELLKDVIRELA 175 (210)
T ss_pred HhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 35689999999999987774 46899999999999 66766667666654
No 477
>PRK13409 putative ATPase RIL; Provisional
Probab=96.35 E-value=0.0046 Score=70.43 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=42.8
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCC
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPC 1027 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~ 1027 (1034)
+..|||||+.+++||..++ .+.++++|||.-++| .++....++|.+++...+.
T Consensus 451 ~~~LSGGe~QRvaiAraL~----~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 505 (590)
T PRK13409 451 VKDLSGGELQRVAIAACLS----RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA 505 (590)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4679999999999998776 468899999999999 7777777777776554333
No 478
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0055 Score=57.78 Aligned_cols=54 Identities=20% Similarity=0.107 Sum_probs=43.2
Q ss_pred CCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 974 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 974 lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
|||||+.+++||..++. +.|+++|||+.++| .++....++|.+.+.. ...+|+|
T Consensus 96 LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~ 151 (173)
T cd03230 96 LSGGMKQRLALAQALLH----DPELLILDEPTSGLDPESRREFWELLRELKKE--GKTILLS 151 (173)
T ss_pred cCHHHHHHHHHHHHHHc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEE
Confidence 99999999999988873 57899999999999 7777777778776543 3445554
No 479
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0036 Score=59.21 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=0.0
Q ss_pred ccccccceeEcCCCeEE-EEcCCCCCHHHHHHHHH
Q 001670 30 FMCHSSLQIELGEWVNF-ITGQNGSGKSAILTALC 63 (1034)
Q Consensus 30 f~~~~~~~i~f~~~~~~-I~G~NGsGKSti~~ai~ 63 (1034)
|.-+.+..+++.+|=++ |+|+.||||||+..+|.
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHh
No 480
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0053 Score=61.90 Aligned_cols=58 Identities=16% Similarity=0.020 Sum_probs=44.1
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
+..|||||+.+++||..++. +.|+++|||+-++| .++...+++|.+.+...+. -+|+|
T Consensus 142 ~~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tii~~ 201 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQ----QPKLILADEPVASLDPASSRQVMDLLKRINREEGI-TVIVS 201 (241)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC-EEEEE
Confidence 45789999999999987773 56899999999999 7777777777776543233 34444
No 481
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.32 E-value=0.0031 Score=63.66 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 41 GEWVNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 41 ~~~~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
.|.+.+|.|||||||||++..|.-.|.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467889999999999999998876664
No 482
>PLN03211 ABC transporter G-25; Provisional
Probab=96.32 E-value=0.003 Score=73.01 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=0.0
Q ss_pred cccceeEcCCC-eEEEEcCCCCCHHHHHHHHH
Q 001670 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~ai~ 63 (1034)
+++..+.+.|| +++|+|||||||||++++|.
T Consensus 84 L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
No 483
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.32 E-value=0.006 Score=64.54 Aligned_cols=53 Identities=25% Similarity=0.182 Sum_probs=38.4
Q ss_pred ceeEeEEEEEecccc--ccceeEcCCCe-EEEEcCCCCCHHHHHHHHHHHcCCCcC
Q 001670 19 AGTITRVRLENFMCH--SSLQIELGEWV-NFITGQNGSGKSAILTALCIAFGCRAK 71 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~--~~~~i~f~~~~-~~I~G~NGsGKSti~~ai~~~Lg~~~~ 71 (1034)
.-+|.++.+.-++.+ .+.++++.+|= -+|+|||||||||++.||.-+....|.
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~ 130 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE 130 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc
Confidence 356666666544443 56777777654 479999999999999999877765443
No 484
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.001 Score=57.65 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q 001670 42 EWVNFITGQNGSGKSAILTALCIAF 66 (1034)
Q Consensus 42 ~~~~~I~G~NGsGKSti~~ai~~~L 66 (1034)
|.+.++.|||||||||+...+...|
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~ 26 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPL 26 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhh
Confidence 4578899999999999988776654
No 485
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.31 E-value=0.0063 Score=57.82 Aligned_cols=49 Identities=29% Similarity=0.237 Sum_probs=39.7
Q ss_pred CCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhc
Q 001670 971 TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSG 1023 (1034)
Q Consensus 971 ~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~ 1023 (1034)
+..|||||+.+++||..++. +.|+++|||+..+| .++.....+|.+...
T Consensus 95 ~~~LS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 95 FNELSGGERQRVLLARALAQ----EPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 56799999999999977763 56899999999999 677777777766543
No 486
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=2.4 Score=47.00 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 001670 848 TPEQLSAQVNRLNQRLKHE 866 (1034)
Q Consensus 848 ~~~~l~~~l~~l~~~l~~~ 866 (1034)
.+..|+.++..+..++..+
T Consensus 560 ~~e~LqaE~~~lk~~l~~l 578 (716)
T KOG4593|consen 560 RLEELQAELERLKERLTAL 578 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455556666665555443
No 487
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.31 E-value=0.0028 Score=61.90 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 44 VNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 44 ~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
+..|.|||||||||+...|.-.|.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 357999999999999999988774
No 488
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=1.9 Score=45.80 Aligned_cols=249 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcch
Q 001670 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAV 716 (1034)
Q Consensus 637 ~~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 716 (1034)
.......+..++..+..++.+..........---.+-.+-..++.++..++..+..+..++..+...+..
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q---------- 75 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ---------- 75 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001670 717 DEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHY 796 (1034)
Q Consensus 717 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1034)
-...........+..-+.-+.+-...-.....++-++...+..+...+.....+.+.+.....++...-..++.+...+
T Consensus 76 -~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rl 154 (772)
T KOG0999|consen 76 -YRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRL 154 (772)
T ss_pred -HHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 001670 797 EDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYSESIED 876 (1034)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~e~ 876 (1034)
...+ .++.-.-..+-.+..+++.+--.+...+..+... ....+-+...+.++.....- +..+.++
T Consensus 155 r~el-Ke~KfRE~RllseYSELEEENIsLQKqVs~LR~s----------QVEyEglkheikRleEe~el----ln~q~ee 219 (772)
T KOG0999|consen 155 RDEL-KEYKFREARLLSEYSELEEENISLQKQVSNLRQS----------QVEYEGLKHEIKRLEEETEL----LNSQLEE 219 (772)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh----------hhhhhHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 877 LRMLYEEKEHKILRKQQTYQAFREKVRACREALDS 911 (1034)
Q Consensus 877 ~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~l~~ 911 (1034)
...-..-...++.+.-..+..-+..-..+..++..
T Consensus 220 ~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 220 AIRLKEIAEKQLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 489
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.30 E-value=0.0029 Score=66.54 Aligned_cols=21 Identities=52% Similarity=0.797 Sum_probs=0.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHH
Q 001670 43 WVNFITGQNGSGKSAILTALC 63 (1034)
Q Consensus 43 ~~~~I~G~NGsGKSti~~ai~ 63 (1034)
|+.+|+|||||||||++.||.
T Consensus 135 glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHH
No 490
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0057 Score=62.46 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=0.0
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEE
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYL 1032 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~ 1032 (1034)
..+..|||||+.+++||..++. +.|+++|||..++| .++.....+|.+.+...+.+-+|+
T Consensus 143 ~~~~~LSgG~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~ 204 (265)
T PRK10575 143 RLVDSLSGGERQRAWIAMLVAQ----DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV 204 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
No 491
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0048 Score=61.82 Aligned_cols=60 Identities=18% Similarity=0.086 Sum_probs=0.0
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEE
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYL 1032 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~ 1032 (1034)
..+..|||||+.+++||..|+. +.|+++|||+-++| .++...+.+|.+.+...+.+=+++
T Consensus 132 ~~~~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~v 193 (235)
T cd03261 132 LYPAELSGGMKKRVALARALAL----DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMV 193 (235)
T ss_pred CChhhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
No 492
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=1.2 Score=43.43 Aligned_cols=179 Identities=11% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchh
Q 001670 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVD 717 (1034)
Q Consensus 638 ~~~i~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 717 (1034)
+..+.+++.+...++.+++.+..++..+..++...+.++.....++..++.++..++..+.+...-+.. +.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~--------raR 108 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK--------RAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q ss_pred HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001670 718 EIS---------------QEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEI 782 (1034)
Q Consensus 718 ~l~---------------~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1034)
.+. ..+.++-.++..+..-++.=..-+......-..+...-..+...+..+.....+++..+..+
T Consensus 109 Amq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L 188 (265)
T COG3883 109 AMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSL 188 (265)
T ss_pred HHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001670 783 EKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDS 825 (1034)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 825 (1034)
..+..+...-+..+.... .....+...+............+.
T Consensus 189 ~~qk~e~~~l~~~~aa~~-a~~~~e~a~l~~qka~a~a~a~~~ 230 (265)
T COG3883 189 NSQKAEKNALIAALAAKE-ASALGEKAALEEQKALAEAAAAEA 230 (265)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHH
No 493
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.29 E-value=0.005 Score=52.72 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=0.0
Q ss_pred cceeEcCCCeEEEEcCCCCCHHHHHHHHHHHcCCCcCCccc
Q 001670 35 SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQR 75 (1034)
Q Consensus 35 ~~~i~f~~~~~~I~G~NGsGKSti~~ai~~~Lg~~~~~~~r 75 (1034)
+.+|.-+. +..|.||+||||||++.-+.-.|.+....+++
T Consensus 22 n~Tia~Ge-ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~ 61 (213)
T COG4136 22 NFTIAKGE-IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61 (213)
T ss_pred eEEecCCc-EEEEECCCCccHHHHHHHHHhhcccCcceeeE
No 494
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.28 E-value=0.0047 Score=61.07 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEE
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYL 1032 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~ 1032 (1034)
..+..||||||.+++||..++. +.|+++|||+-++| .++....++|.+.+...+.+=+++
T Consensus 136 ~~~~~LS~G~~qrv~la~al~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 197 (218)
T cd03255 136 HYPSELSGGQQQRVAIARALAN----DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVV 197 (218)
T ss_pred cChhhcCHHHHHHHHHHHHHcc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE
No 495
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0065 Score=58.42 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 973 GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 973 ~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
.|||||+.+++||..++. +.|+++|||+.++| .++...+.+|.+.+.. ..-+|+|
T Consensus 108 ~LSgGe~qrv~la~al~~----~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiiiv 164 (192)
T cd03232 108 GLSVEQRKRLTIGVELAA----KPSILFLDEPTSGLDSQAAYNIVRFLKKLADS--GQAILCT 164 (192)
T ss_pred cCCHHHhHHHHHHHHHhc----CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc--CCEEEEE
No 496
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.27 E-value=0.0066 Score=58.92 Aligned_cols=59 Identities=17% Similarity=0.044 Sum_probs=0.0
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..+..|||||+.+++||..++. +.|+++|||...+| .++....++|.+... ....+|+|
T Consensus 123 ~~~~~LS~G~~~rv~laral~~----~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~ 183 (200)
T PRK13540 123 YPCGLLSSGQKRQVALLRLWMS----KAKLWLLDEPLVALDELSLLTIITKIQEHRA--KGGAVLLT 183 (200)
T ss_pred CChhhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH--cCCEEEEE
No 497
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.26 E-value=0.0038 Score=58.50 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=0.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Q 001670 44 VNFITGQNGSGKSAILTALCIAFG 67 (1034)
Q Consensus 44 ~~~I~G~NGsGKSti~~ai~~~Lg 67 (1034)
+.+|+|+|||||||++.+|.-.++
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
No 498
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.25 E-value=0.0062 Score=60.05 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=0.0
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..+..|||||+.+++||..++. +.|+++|||+.++| .++....++|.+.... ..-+|+|
T Consensus 133 ~~~~~LS~G~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~ 193 (214)
T TIGR02673 133 AFPEQLSGGEQQRVAIARAIVN----SPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVIVA 193 (214)
T ss_pred CChhhCCHHHHHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEE
No 499
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.25 E-value=0.0065 Score=58.99 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=0.0
Q ss_pred cCCCCCCcccchHHHHHHHHHhhhhcCCCeeEeehhhhhh--hhHHHHHHHHHHhhcCCCCceEEEe
Q 001670 969 RDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM--VSFYINYVFSIDFSGYVPCNFFYLV 1033 (1034)
Q Consensus 969 ~~~~~lSGGEks~~~lall~al~~~~~~Pf~vlDEiD~~~--~~~~~~~~~l~~~~~~~~~~q~~~i 1033 (1034)
..+..|||||+.+++||..++. +.|+++|||+..+| .++...+++|.+... ...-+|+|
T Consensus 121 ~~~~~LS~G~~qrl~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~ 181 (201)
T cd03231 121 RPVAQLSAGQQRRVALARLLLS----GRPLWILDEPTTALDKAGVARFAEAMAGHCA--RGGMVVLT 181 (201)
T ss_pred CchhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEE
No 500
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.25 E-value=3.9 Score=48.68 Aligned_cols=241 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhhh
Q 001670 197 SIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRI 276 (1034)
Q Consensus 197 ~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (1034)
...+.+......+.+++...+.+...++.+......+.+ -+..+...........+.....++..+...+..+..++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eel 524 (1317)
T KOG0612|consen 448 QEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEEL 524 (1317)
T ss_pred HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001670 277 PRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKL---ELEGELVRNTSYMQKMVNRV 353 (1034)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 353 (1034)
+.++............+.....++......+..+.+....-......--..++.... .+...+..++.....+....
T Consensus 525 e~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~ 604 (1317)
T KOG0612|consen 525 EDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKEN 604 (1317)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHhHHHHHHHHHH
Q 001670 354 KGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKN--EIRRISDEIEDYDKKC 431 (1034)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~~~~~ 431 (1034)
..+........... .........++..+..+++.......++..++.......+.+..... .-..+..++..+...+
T Consensus 605 ~~~~~~~e~~~~~~-~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~ 683 (1317)
T KOG0612|consen 605 KKLRSELEKERRQR-TEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNEL 683 (1317)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 001670 432 REIRSEIREL 441 (1034)
Q Consensus 432 ~~l~~~l~~l 441 (1034)
.....+...+
T Consensus 684 eq~~~E~~~~ 693 (1317)
T KOG0612|consen 684 EQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHH
Done!