Query 001670
Match_columns 1034
No_of_seqs 449 out of 2881
Neff 11.4
Searched_HMMs 29240
Date Tue Mar 26 17:00:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001670.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_966-970//hhsearch_pdb/001670hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qks_A DNA double-strand break 1.0 1 1 184.4 16.3 179 20-214 1-189 (203)
2 3auy_A DNA double-strand break 1.0 1 1 177.8 27.7 151 18-186 1-156 (371)
3 1w1w_A Structural maintenance 1.0 1 1 171.2 16.7 162 19-187 1-174 (430)
4 3kta_A Chromosome segregation 1.0 1 1 167.5 18.5 167 19-195 1-176 (182)
5 4ad8_A DNA repair protein RECN 1.0 1 1 166.9 26.6 110 19-150 37-148 (517)
6 1f2t_A RAD50 ABC-ATPase; DNA d 1.0 1 1 162.0 11.3 140 20-172 1-149 (149)
7 1e69_A Chromosome segregation 1.0 1 1 154.7 16.5 139 20-174 1-147 (322)
8 3qkt_A DNA double-strand break 1.0 1 1 152.8 12.9 141 20-172 1-149 (339)
9 3qf7_A RAD50; ABC-ATPase, ATPa 1.0 1 1 136.0 23.0 152 20-183 1-161 (365)
10 2o5v_A DNA replication and rep 1.0 1 1 126.1 21.8 121 18-167 2-122 (359)
No 1
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=1.00 E-value=1 Score=184.44 Aligned_cols=179 Identities=20% Similarity=0.289 Sum_probs=134.0
Q ss_pred EEEEEEEEEECCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 16748998712233561667189748998599997789999999870787677665433124444198247999999826
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|.|.||++|.+.+|+|+||+|+|+||||||||||++||.|+||+.+. .|+.+..++++.|...+.|+++|.++
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~~--~r~~~~~~~i~~~~~~~~v~l~f~~~ 78 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (203)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHTTSC--CTTCCHHHHHTSCSSCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHHHHCCCCCCEEEEEEEEEC
T ss_conf 9799999988767156299818981899928999889999999999649855--65666123330689848999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEE-CC---CCE--EEEECCCC--C-CCCCCHHHHHHHHHHC-CCCCCCCEEEECCHHHHHH
Q ss_conf 977777656798089999852-58---561--89866899--7-1002089999997654-9776788025321335785
Q 001670 100 GEDAFKPEIFGDSIIIERRIT-ES---TST--TVLKDHQG--K-RVASRKQELLELIDHF-NIDVENPCVIMSQDKSREF 169 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~---~~~--~~i~~~~g--~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~ 169 (1034)
+ ..|+|.|.+. ++ .+. +++. +| . ....+..++...+..+ +.+.+...++++|+.+..|
T Consensus 79 ~----------~~~~i~R~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~v~~~i~~ll~~~~f~~~~~l~Qg~~~~~ 146 (203)
T 3qks_A 79 G----------TKYRITRRFLKGYSSGEIHAMKRLV--GNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAI 146 (203)
T ss_dssp T----------EEEEEEEEEECSSSCEEEEEEEEEE--TTEEEESSCSSHHHHHHHHHHHSCHHHHHHTTEECTTHHHHH
T ss_pred C----------EEEEEEEEEECCCCCCCCCEEEEEC--CCCEEEECCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHH
T ss_conf 9----------9999999997689877653599972--896655034776899999999739878127889958757878
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 305992346899996541899999999999999999999999998
Q 001670 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEA 214 (1034)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 214 (1034)
+... .++.+++....++..+....+.+.+....+...+.+++.
T Consensus 147 l~~~--~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~ 189 (203)
T 3qks_A 147 LESD--EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRD 189 (203)
T ss_dssp HHCH--HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7493--999999999979789999999999999999999999999
No 2
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=1.00 E-value=1 Score=177.82 Aligned_cols=151 Identities=21% Similarity=0.309 Sum_probs=113.0
Q ss_pred CCEEEEEEEEEECCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE
Q ss_conf 76167489987122335616671897489985999977899999998707876776654331244441982479999998
Q 001670 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1034)
Q Consensus 18 ~~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~ 97 (1034)
|||+|.+|.|.||++|...+|+|+||+|+|+|+||||||||+|||+|+++|.. |+....++|+.|+..+.|+++|.
T Consensus 1 m~M~l~~L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~----r~~~~~~~ir~g~~~~~V~~~f~ 76 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAG----SNFNYDTIITKGKKSVYVELDFE 76 (371)
T ss_dssp CCEEEEEEEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-----CCCTTTTBCTTCSEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHCCCCCCCEEEEEEEE
T ss_conf 98478699998611536659836998499999999988999999999982998----75556765118998389999999
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEECCCC--EEEEECCCCCCCCCCHHHHHHHHHH-CCCCCC--CCEEEECCHHHHHHHHC
Q ss_conf 269777776567980899998525856--1898668997100208999999765-497767--88025321335785305
Q 001670 98 NRGEDAFKPEIFGDSIIIERRITESTS--TTVLKDHQGKRVASRKQELLELIDH-FNIDVE--NPCVIMSQDKSREFLHS 172 (1034)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~--~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~q~~~~~~l~~ 172 (1034)
..+ ..+.|.|.+..|.+ .+++ +|.+++....++...+.. +|++.. .++++++|+....++..
T Consensus 77 ~~~----------~~~~i~r~~~~g~~~~~~~~---ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~ 143 (371)
T 3auy_A 77 VNG----------NNYKIIREYDSGRGGAKLYK---NGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSL 143 (371)
T ss_dssp ETT----------EEEEEEEEEETTEEEEEEEE---TTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHS
T ss_pred ECC----------EEEEEEEEECCCCCCEEEEE---CCEEECCCHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHHHHHC
T ss_conf 899----------99999999768998539998---99861164789999999986959899474326617307998735
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 99234689999654
Q 001670 173 GNDKDKFKFFFKAT 186 (1034)
Q Consensus 173 ~~~~~~~~~~~~~~ 186 (1034)
++..+.+++....
T Consensus 144 -~~~~Rr~~ld~~~ 156 (371)
T 3auy_A 144 -KPSEKLETVAKLL 156 (371)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
T ss_conf -9899999999986
No 3
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=171.23 Aligned_cols=162 Identities=21% Similarity=0.328 Sum_probs=118.8
Q ss_pred CEEEEEEEEEECCCCCCC-EEECC-CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEE
Q ss_conf 616748998712233561-66718-9748998599997789999999870787677665433124444198247999999
Q 001670 19 AGTITRVRLENFMCHSSL-QIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~~~~-~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~ 96 (1034)
||+|++|.+.||++|+.. .+.|+ +++|+|+||||||||||++||.|++++.+. ..|+....++|+.|...+.|.++|
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~-~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN-HLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CCEEEEEEEECEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9715899995889989940577569978999999988899999999845342434-401445899996488664025872
Q ss_pred EECCCC------CCCC---CCCCCEEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCHHH
Q ss_conf 826977------7776---56798089999852-5856189866899710020899999976549776788025321335
Q 001670 97 KNRGED------AFKP---EIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKS 166 (1034)
Q Consensus 97 ~~~~~~------~~~~---~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 166 (1034)
.+.+.. .++. ...+..+.|.|.+. ++.+.|++ ||+.+ +..++..++...++...++.+++.|+.+
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~~i~~~~~~~~i~qg~~ 154 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKI---DGKTV--SYKDYSIFLENENILIKAKNFLVFQGDV 154 (430)
T ss_dssp ---------CCEEEEEEEEEETTEEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHHHHTTCCTTTCTTEECTTCT
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEE---CCEEC--CHHHHHHHHHHCCCCCCCCCEEEEHHHH
T ss_conf 266665677631111034216882799999996699569999---99886--4999999998579587872004665759
Q ss_pred HHHHHCCCCHHHHHHHHHHHH
Q ss_conf 785305992346899996541
Q 001670 167 REFLHSGNDKDKFKFFFKATL 187 (1034)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~ 187 (1034)
..++.. ++.++..++.....
T Consensus 155 ~~l~~~-~p~eRr~~ld~~~g 174 (430)
T 1w1w_A 155 EQIAAQ-SPVELSRMFEEVSG 174 (430)
T ss_dssp THHHHS-CHHHHHHTC-----
T ss_pred HHHHHC-CHHHHHHHHHHHHC
T ss_conf 999858-99999999999839
No 4
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=1.00 E-value=1 Score=167.49 Aligned_cols=167 Identities=24% Similarity=0.366 Sum_probs=132.6
Q ss_pred CEEEEEEEEEECCCC--CCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC------CEE
Q ss_conf 616748998712233--561667189748998599997789999999870787677665433124444198------247
Q 001670 19 AGTITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYA 90 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~--~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~------~~a 90 (1034)
||+|.+|.+.||++| .+.+++|++|+|+|+||||||||||++||.|+|++.+....|+....++++.|. ..+
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred CCEEEEEEEECEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCEE
T ss_conf 95689999958486537628996589828999999997899999999997687422345432000366466667777359
Q ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHH
Q ss_conf 999999826977777656798089999852-5856189866899710020899999976549776788025321335785
Q 001670 91 MVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (1034)
Q Consensus 91 ~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (1034)
.|.++|.+.+.. + ...+..++|.|.+. .+...|++ +|..+ ...++.+++..++++.+++ .+++|+....|
T Consensus 81 ~v~~~f~~~~~~-~--~~~~~~~~i~r~~~~~~~~~~~i---~g~~~--~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l 151 (182)
T 3kta_A 81 EVAIYFNNEDRG-F--PIDEDEVVIRRRVYPDGRSSYWL---NGRRA--TRSEILDILTAAMISPDGY-NIVLQGDITKF 151 (182)
T ss_dssp EEEEEEECTTCC-S--SSSSSEEEEEEEECTTSCEEEEE---TTEEE--CHHHHHHHHHHTTCCTTCT-TEECTTCTTHH
T ss_pred EEEEEEECCCCC-C--CCCCCEEEEEEEEEECCCEEEEE---CCEEC--CHHHHHHHHHHCCCCCCCC-EEEECCCHHHH
T ss_conf 999999578765-4--56786899999999589579999---99586--8999999999859997887-79975218899
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30599234689999654189999999
Q 001670 170 LHSGNDKDKFKFFFKATLLQQVNDLL 195 (1034)
Q Consensus 170 l~~~~~~~~~~~~~~~~~l~~~~~~l 195 (1034)
+.. ++..+.+++....++..+....
T Consensus 152 ~~~-~~~~r~~~ld~~~g~~~~~~~~ 176 (182)
T 3kta_A 152 IKM-SPLERRLLIDDISGIAEYDSKK 176 (182)
T ss_dssp HHS-CHHHHHHHHHHHHTC-------
T ss_pred HHC-CHHHHHHHHHHHHCHHHHHHHH
T ss_conf 827-9999999999987858899999
No 5
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=166.88 Aligned_cols=110 Identities=27% Similarity=0.402 Sum_probs=92.1
Q ss_pred CEEEEEEEEEECCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEE-E
Q ss_conf 616748998712233561667189748998599997789999999870787677665433124444198247999999-8
Q 001670 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL-K 97 (1034)
Q Consensus 19 ~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~-~ 97 (1034)
.|+|.+|.|.||++|.+.+|+|+||+|+|+|+||||||||++||.|++|+++. .++|+.|...+.|++.| .
T Consensus 37 ~M~l~~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~--------~~~i~~g~~~a~v~~~f~~ 108 (517)
T 4ad8_A 37 GPRLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIRSGEKELLVTGFWGD 108 (517)
T ss_dssp -CCCCEEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC--------GGGBCTTCSEEEEEEEC--
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCH--------HHHHCCCCCCEEEEEEEEE
T ss_conf 66642360016166301799538980799859998789999999987367768--------9982189973899999985
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf 26977777656798089999852-585618986689971002089999997654
Q 001670 98 NRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHF 150 (1034)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~ 150 (1034)
..+ +..++|.|.+. +|.+.|++ ||.+++ ...+.++...+
T Consensus 109 ~~~---------~~~~~i~r~~~~~g~~~~~i---ng~~v~--~~~l~~~~~~l 148 (517)
T 4ad8_A 109 GDE---------SEADSASRRLSSAGRGAARL---SGEVVS--VRELQEWAQGR 148 (517)
T ss_dssp ---------------CEEEEEEETTSCCEEES---SSSBCC--HHHHHHHHTTT
T ss_pred CCC---------CCEEEEEEEEECCCCCEEEE---CCEECC--HHHHHHHHHHH
T ss_conf 489---------97699999996388838999---999887--99999996310
No 6
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=1.00 E-value=1 Score=161.98 Aligned_cols=140 Identities=24% Similarity=0.385 Sum_probs=106.4
Q ss_pred EEEEEEEEEECCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 16748998712233561667189748998599997789999999870787677665433124444198247999999826
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|.+|.+.||++|.+.+|+|++|+|+|+||||||||||++||.|+|++... .|+....++++.|...+.|+++|.++
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~--~r~~~~~~~~~~~~~~~~v~~~f~~~ 78 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (149)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSC--CTTSSCCCSCSTTCCCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHEECCCCCEEEEEEEEEC
T ss_conf 9787999968534866599728976999988999889999999999759854--45588788500699748999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC-C-CCEEEE-EC--CCC-CCCCCCH-HHHHHHHHHCCCCCCCC--EEEECCHHHHHHH
Q ss_conf 9777776567980899998525-8-561898-66--899-7100208-99999976549776788--0253213357853
Q 001670 100 GEDAFKPEIFGDSIIIERRITE-S-TSTTVL-KD--HQG-KRVASRK-QELLELIDHFNIDVENP--CVIMSQDKSREFL 170 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~-~-~~~~~i-~~--~~g-~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l 170 (1034)
+ ..|.|.|.+.. + .+.++. .+ ..+ ..+..+. .++.+.+..+ ++...+ .++++|+++..|+
T Consensus 79 ~----------~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~QG~~~~~l 147 (149)
T 1f2t_A 79 G----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAIL 147 (149)
T ss_dssp T----------EEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECTTHHHHHT
T ss_pred C----------EEEEEEEEECCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHH-CCHHHHHHEEEECCCCHHHHH
T ss_conf 9----------99999999867888438999752689733783447668999999997-699885316898075798795
Q ss_pred HC
Q ss_conf 05
Q 001670 171 HS 172 (1034)
Q Consensus 171 ~~ 172 (1034)
.+
T Consensus 148 ~~ 149 (149)
T 1f2t_A 148 ES 149 (149)
T ss_dssp CC
T ss_pred HC
T ss_conf 39
No 7
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=154.68 Aligned_cols=139 Identities=26% Similarity=0.393 Sum_probs=114.4
Q ss_pred EEEEEEEEEECCCC-CCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC------CEEEE
Q ss_conf 16748998712233-561667189748998599997789999999870787677665433124444198------24799
Q 001670 20 GTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYAMV 92 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~------~~a~v 92 (1034)
|+|++|.+.||++| +..+|+|+||+|+|+||||||||||++||.|++|..+....|+....++|+.|. ..+.|
T Consensus 1 M~l~~L~i~nfr~~~~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v 80 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYV 80 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEE
T ss_pred CEEEEEEEECCEEECCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEE
T ss_conf 95759999493521697688569992899999999679999999998688840000202588760267667888861899
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHH
Q ss_conf 9999826977777656798089999852-585618986689971002089999997654977678802532133578530
Q 001670 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (1034)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 171 (1034)
++.|.+.+ ..+.|.|.+. .+.+.|++ +|..+ +..++..++...++... .+.++.|+.+.+++.
T Consensus 81 ~~~f~~~~----------~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~g~~~~-~~~lv~qg~i~~~~~ 144 (322)
T 1e69_A 81 ELVFEENG----------EEITVARELKRTGENTYYL---NGSPV--RLKDIRDRFAGTGLGVD-FYSIVGQGQIDRIVN 144 (322)
T ss_dssp EEEEESSS----------CEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHTTTSSTTTT-CCSEEEHHHHHHHHT
T ss_pred EEEEEECC----------EEEEEEEEEECCCCEEEEE---CCCCC--CHHHHHHHHHHCCCCHH-HEEEEEHHHHHHHHH
T ss_conf 99999399----------2999999998699638999---99083--49999999998399804-606674564999986
Q ss_pred CCC
Q ss_conf 599
Q 001670 172 SGN 174 (1034)
Q Consensus 172 ~~~ 174 (1034)
..+
T Consensus 145 ~~p 147 (322)
T 1e69_A 145 ASP 147 (322)
T ss_dssp C--
T ss_pred CCH
T ss_conf 668
No 8
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=1.00 E-value=1 Score=152.77 Aligned_cols=141 Identities=21% Similarity=0.352 Sum_probs=100.2
Q ss_pred EEEEEEEEEECCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 16748998712233561667189748998599997789999999870787677665433124444198247999999826
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|+|++|++.||++|.+.+|+|+||+|+|+||||||||||++||+|+|++... .++.+..++++.|...++|.++|.++
T Consensus 1 M~i~~l~l~nF~~~~~~~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (339)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCC--CTTCCHHHHBCTTCSEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHHCCCCCEEEEEEEEEEC
T ss_conf 9679999976217557177279983899999999789999999999648756--67677778861789808999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEECC----CCEEEEECCCCCCC---CCCHHHHHHHHHHC-CCCCCCCEEEECCHHHHHHHH
Q ss_conf 97777765679808999985258----56189866899710---02089999997654-977678802532133578530
Q 001670 100 GEDAFKPEIFGDSIIIERRITES----TSTTVLKDHQGKRV---ASRKQELLELIDHF-NIDVENPCVIMSQDKSREFLH 171 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~----~~~~~i~~~~g~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~ 171 (1034)
+ ..|.|.|.+..+ ...+...-.++... .....++..++..+ +.+.+...++++|+.+..++.
T Consensus 79 ~----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg~~~~il~ 148 (339)
T 3qkt_A 79 G----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE 148 (339)
T ss_dssp T----------EEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTTCTTGGGS
T ss_pred C----------EEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHH
T ss_conf 9----------999999998547778864378994288255423331678999999863978765425861212999872
Q ss_pred C
Q ss_conf 5
Q 001670 172 S 172 (1034)
Q Consensus 172 ~ 172 (1034)
.
T Consensus 149 ~ 149 (339)
T 3qkt_A 149 S 149 (339)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 9
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=1.00 E-value=1 Score=136.02 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=103.2
Q ss_pred EEEEEEEEEECCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 16748998712233561667189748998599997789999999870787677665433124444198247999999826
Q 001670 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (1034)
Q Consensus 20 ~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~~~ 99 (1034)
|++.+|++.||++|.+.+|+|++|+++|+||||||||||++||+|+|+|....... ..-...++.+...+.|+++|...
T Consensus 1 M~~~~l~~~~f~~~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~~-~~~~~~~~~~~~~~~v~~~f~~~ 79 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPN-SYDYVNRNAVDGTARLVFQFERG 79 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCSS-GGGGBCTTCTTCEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHCCCCCCCEEEEEEEEEC
T ss_conf 95489999676686661783489869999999997899999999996688655567-50455414788738999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC--CCCEEEE--ECCCCCC--CCCCHHHHHH-HHHHCCCCCCC--CEEEECCHHHHHHH
Q ss_conf 9777776567980899998525--8561898--6689971--0020899999-97654977678--80253213357853
Q 001670 100 GEDAFKPEIFGDSIIIERRITE--STSTTVL--KDHQGKR--VASRKQELLE-LIDHFNIDVEN--PCVIMSQDKSREFL 170 (1034)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~--~~~~~~i--~~~~g~~--~~~~~~~~~~-~~~~~~~~~~~--~~~~~~q~~~~~~l 170 (1034)
| ..|.|.|.+.. +.....+ ...+|.. +..+..++.. +...+|++... .+.+++|+.+..|+
T Consensus 80 g----------~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l 149 (365)
T 3qf7_A 80 G----------KRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLL 149 (365)
T ss_dssp T----------EEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTT
T ss_pred C----------EEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCHHHHH
T ss_conf 9----------899999998526788760799983799366513676889999999979999994568997332249898
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 0599234689999
Q 001670 171 HSGNDKDKFKFFF 183 (1034)
Q Consensus 171 ~~~~~~~~~~~~~ 183 (1034)
.. ++.++.+.+.
T Consensus 150 ~~-~~~~r~~~l~ 161 (365)
T 3qf7_A 150 IS-PPSEITEIIS 161 (365)
T ss_dssp TS-CHHHHHHHHH
T ss_pred HC-CHHHHHHHHH
T ss_conf 53-9266899999
No 10
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=126.12 Aligned_cols=121 Identities=22% Similarity=0.302 Sum_probs=92.0
Q ss_pred CCEEEEEEEEEECCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE
Q ss_conf 76167489987122335616671897489985999977899999998707876776654331244441982479999998
Q 001670 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (1034)
Q Consensus 18 ~~~~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~lg~~~~~~~r~~~~~~~i~~g~~~a~v~l~~~ 97 (1034)
.+|+|++|.+.||++|.+.++.|++|+|+|+|||||||||+++||.++++++ . |+....++|+.|...+.|.+.|.
T Consensus 2 ~~M~i~~L~l~~~~~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~-~---R~~~~~~lI~~g~~~~~V~~~~~ 77 (359)
T 2o5v_A 2 GDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ-T---DAPRIEQLIQAGETEAYVRADLQ 77 (359)
T ss_dssp CCCCEEEEEEESBTTCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSC-C---CCSSGGGGBCTTCSCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCC-C---CCCCHHHHHCCCCCCEEEEEEEE
T ss_conf 9868769998273334456999769859999999987559999998742488-7---88777987206998299999982
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCHHHH
Q ss_conf 2697777765679808999985258561898668997100208999999765497767880253213357
Q 001670 98 NRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSR 167 (1034)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 167 (1034)
+.+ ..+.|...+..++..+.+ +|..+. +.+++ | -++.++.|+...
T Consensus 78 ~~~----------~~~~i~~~~~~~~~~~~i---ng~~~~-----~~~l~---g----l~~v~~~p~d~~ 122 (359)
T 2o5v_A 78 QGG----------SLSIQEVGLGRGRRQLKV---DGVRAR-----TGDLP---R----GGAVWIRPEDSE 122 (359)
T ss_dssp ETT----------EEEEEEEEEETTEEEEEE---TTEEEC-----GGGCC---S----CCEEEECTTTTH
T ss_pred CCC----------CEEEEEEEEECCCEEEEE---CCEECC-----HHHHH---C----CHHEEECCCCHH
T ss_conf 489----------669999999879669999---992867-----99982---7----023389955376
Done!