Your job contains 1 sequence.
>001671
MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSA
PPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKED
WRFTQRLRGGGEVGGIGDRRKGNGSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPG
LGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDG
LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRAS
SMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHS
LFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGH
KSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSP
IGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSAL
QAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYG
VPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLS
GGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQK
LETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLS
LQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFI
VLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQH
VLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEEN
EPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVA
AGERRISIMTPHPA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001671
(1034 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 1885 4.3e-237 2
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 1888 3.1e-234 3
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 1864 4.8e-205 2
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 1502 1.0e-172 3
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 1227 3.5e-135 3
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 1092 2.5e-120 3
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 1021 6.1e-113 4
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 1033 1.1e-112 4
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 1010 8.7e-112 4
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 1021 8.2e-110 3
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 1026 1.0e-109 3
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 1010 1.3e-109 3
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 1021 1.7e-109 3
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 1021 1.7e-109 3
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 1011 3.5e-109 3
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 1043 5.6e-109 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 1041 5.6e-109 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 1041 5.6e-109 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 1014 9.2e-109 3
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 1041 1.2e-108 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 1043 1.5e-108 2
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 1036 2.4e-108 2
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 1010 2.4e-108 3
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 1010 2.4e-108 3
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 1010 2.4e-108 3
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 1043 3.9e-108 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 1031 1.3e-107 2
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 1021 1.3e-107 2
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 1030 1.7e-107 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 1022 2.7e-107 2
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 1022 2.7e-107 2
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 1010 1.5e-106 3
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 1010 1.5e-106 2
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 1011 4.0e-106 2
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 910 3.0e-96 3
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 866 1.7e-88 2
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 810 4.6e-86 3
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 783 7.9e-78 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 715 1.3e-70 1
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 696 1.3e-68 1
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 677 5.2e-66 2
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 565 4.7e-54 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 513 6.5e-53 2
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 516 2.7e-50 2
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 515 2.0e-47 4
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 462 4.6e-46 2
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 477 1.1e-45 2
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 477 1.1e-45 2
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 483 4.9e-43 2
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 445 4.9e-41 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 462 1.1e-40 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 450 5.7e-40 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 443 6.5e-39 2
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 410 2.9e-37 1
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 406 7.8e-37 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 406 2.1e-34 2
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 394 7.0e-34 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 379 3.1e-32 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 371 1.9e-31 2
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 364 8.4e-31 2
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 342 2.4e-28 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 333 2.7e-27 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 333 2.7e-27 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 339 1.1e-25 2
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 258 7.8e-19 1
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 255 1.7e-18 1
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 262 3.1e-18 2
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 248 3.0e-17 1
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 236 2.7e-16 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 213 5.5e-15 3
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 213 5.5e-15 3
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 222 1.4e-14 1
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 201 4.0e-11 2
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 194 4.8e-11 2
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 177 1.4e-10 3
UNIPROTKB|F1SJG9 - symbol:LOC100152831 "Uncharacterized p... 185 1.5e-10 1
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 185 1.5e-10 1
UNIPROTKB|E1C1R5 - symbol:KIAA0020 "Uncharacterized prote... 182 3.0e-10 1
ZFIN|ZDB-GENE-030131-9808 - symbol:si:ch211-241o7.5 "si:c... 181 3.5e-10 1
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 179 3.8e-10 1
UNIPROTKB|Q15397 - symbol:KIAA0020 "Pumilio domain-contai... 180 5.1e-10 1
UNIPROTKB|E2RBF2 - symbol:KIAA0020 "Uncharacterized prote... 178 8.4e-10 1
UNIPROTKB|A2VDN9 - symbol:KIAA0020 "Uncharacterized prote... 176 1.4e-09 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 170 1.5e-09 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 168 2.4e-09 1
WB|WBGene00004240 - symbol:puf-4 species:6239 "Caenorhabd... 176 3.9e-09 2
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 166 4.0e-09 1
MGI|MGI:106253 - symbol:D19Bwg1357e "DNA segment, Chr 19,... 172 4.8e-09 1
RGD|1564753 - symbol:LOC499339 "hypothetical protein LOC4... 171 9.8e-09 2
SGD|S000003851 - symbol:JSN1 "Member of the Puf family of... 178 1.9e-08 2
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 159 6.7e-08 1
UNIPROTKB|H0YDQ6 - symbol:PUM1 "Pumilio homolog 1" specie... 135 8.1e-08 1
TAIR|locus:2086760 - symbol:PUM24 "pumilio 24" species:37... 158 1.2e-07 1
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 155 1.7e-07 1
DICTYBASE|DDB_G0288551 - symbol:DDB_G0288551 "pumilio RNA... 154 1.7e-06 3
POMBASE|SPCP1E11.11 - symbol:puf6 "Puf family RNA-binding... 140 1.1e-05 1
WB|WBGene00014165 - symbol:puf-12 species:6239 "Caenorhab... 137 2.9e-05 1
UNIPROTKB|F1NWW8 - symbol:KIAA0020 "Uncharacterized prote... 131 9.4e-05 1
CGD|CAL0005913 - symbol:orf19.3547 species:5476 "Candida ... 131 0.00011 1
SGD|S000006246 - symbol:PUF2 "Member of the PUF protein f... 139 0.00018 2
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 1885 (668.6 bits), Expect = 4.3e-237, Sum P(2) = 4.3e-237
Identities = 390/624 (62%), Positives = 464/624 (74%)
Query: 420 HKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLXXXXXXXXXXXXXXX 479
HK+ S NS L+GP NGG + +Q + + N +N++L
Sbjct: 365 HKATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDSPNYCLNNYALNPAVASMMANQLGNN 424
Query: 480 XXXXXXLPPLYENXXXXXXXXGNGLDARTLAS--LGLGPNVMAAAAELQSMNRLGNHT-- 535
P+Y+N +G+D+R + G N+ +E +++ R N
Sbjct: 425 NFA-----PMYDNVSALGF---SGMDSRHHGRGFVSSGQNL----SESRNLGRFSNRMMG 472
Query: 536 AGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDI----GNSYMDLLGLQKAYLGAL 591
G+ LQ+ ++DP+Y QY S + LNDP+MD G+SYMD+L LQ+AYLGA
Sbjct: 473 GGAGLQSHMVDPMYNQYADSLDL-------LNDPSMDRNFMGGSSYMDMLELQRAYLGA- 524
Query: 592 LSPQKSQYGVPYLNKSGSLNNN-LYGNPAFGLGMSYPGGPL----LPNSPVGSGSPVRHG 646
QKSQYGVPY KSGS N++ YG+P FG MSYPG PL +PNS + SP+R
Sbjct: 525 ---QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRD 579
Query: 647 DRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVE 706
+ NMRFPS RN SGG+MG WH +A S DE F SS+L+EFKSNKT+ FELSEIAGHVVE
Sbjct: 580 EVNMRFPSATRNYSGGLMGSWHMDA--SFDEGFGSSMLEEFKSNKTRGFELSEIAGHVVE 637
Query: 707 FSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVR 766
FS+DQYGSRFIQQKLETATT+EKNMV++EIMPQAL LMTDVFGNYVIQKFFEHG Q R
Sbjct: 638 FSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRR 697
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
ELA++L HVL LSLQMYGCRVIQKAIEVV+LDQ+ +MVKELDGH+MRCVRDQNGNHV+Q
Sbjct: 698 ELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQ 757
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
KCIECVPE+ I+FI+ TF+ VVTLSTHPYGCRVIQRVLEHCHD TQS +M+EIL +V
Sbjct: 758 KCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVS 817
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
MLAQDQYGNYVVQHVLEHGKP ER+ IIK+L G+IVQMSQQKFASNV+EKCL+FG P ER
Sbjct: 818 MLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEER 877
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT 1006
+ LVNEMLG+ +ENEPLQ MMKDQFANYVVQKVLETCDDQQ ELIL RIKVHL ALKKYT
Sbjct: 878 ELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTALKKYT 937
Query: 1007 YGKHIVARVEKLVAAGERRISIMT 1030
YGKH+VAR+EKLVAAGERR+++ +
Sbjct: 938 YGKHVVARIEKLVAAGERRMALQS 961
Score = 424 (154.3 bits), Expect = 4.3e-237, Sum P(2) = 4.3e-237
Identities = 137/411 (33%), Positives = 191/411 (46%)
Query: 16 DYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLF 75
DY +++G L+ EQ+++Q A +LE+ELN+FRSGSAPPTV+GS+S+ GLF
Sbjct: 22 DYEKEIGVLLGEQQRRQ----------VEADELERELNLFRSGSAPPTVDGSVSAAGGLF 71
Query: 76 KKLSD---------NKG-GFL-NEEELRADPAXXXXXXXXXXXXXXXXXXXXSKEDWRFT 124
NKG GF ++EE R DPA S+ED R
Sbjct: 72 SGGGGAPFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVA 131
Query: 125 QXXXXXXXXXXXXXXXXX---NGSLFAVQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
Q N SLF++ P
Sbjct: 132 QRLKGSNNVLGGVGDRRKVNDNRSLFSMPPGFEGEKTGASASEWDANGLIGLPGLGLGG- 190
Query: 182 XXXXRQKSIAEIIQDDMSHGAPVXXXXXXXXXXNAFEDAIESSETQFAHLHHDLSSIDGL 241
+QKS A+I Q DM HG PV N F++ ++S+ ++LS
Sbjct: 191 ----KQKSFADIFQADMGHGHPVAQQPSRPASRNTFDENVDSN--------NNLS----- 233
Query: 242 GSSANKQGMPSA-QSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRAS 300
PSA Q IG + +SYA+ LG+SLSR+ TPDPQ +AR PSP + G GR S
Sbjct: 234 ---------PSASQGIGAPSPYSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRMS 284
Query: 301 SMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTD-GVADQENNSRSQNQHEIDD-R 358
S DKR S P NGV+ L +S+++V ALSGLNLS G+ D RSQ + +++ R
Sbjct: 285 SNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSCSVGLDD-----RSQAEQDVEKVR 339
Query: 359 HSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHST-KGSYPNMGKSGVGI 408
+ +F LQG + QH F +S+ H S +S +G + + GVG+
Sbjct: 340 NYMFGLQGGHNEVNQHEFPNKSDQAHKATGSLRNSQLRGPHGSAYNGGVGL 390
Score = 300 (110.7 bits), Expect = 5.7e-224, Sum P(2) = 5.7e-224
Identities = 80/207 (38%), Positives = 112/207 (54%)
Query: 245 ANKQGMPSA-QSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMD 303
+N PSA Q IG + +SYA+ LG+SLSR+ TPDPQ +AR PSP + G GR SS D
Sbjct: 228 SNNNLSPSASQGIGAPSPYSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRMSSND 287
Query: 304 KRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTD-GVADQENNSRSQNQHEIDD-RHSL 361
KR S P NGV+ L +S+++V ALSGLNLS G+ D RSQ + +++ R+ +
Sbjct: 288 KRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSCSVGLDD-----RSQAEQDVEKVRNYM 342
Query: 362 FNLQGDSRHMKQHPFLGRSESGHLLMHSASHST-KGSYPNMGKSGVGIDMNNASLMADGH 420
F LQG + QH F +S+ H S +S +G + + GVG+ N D
Sbjct: 343 FGLQGGHNEVNQHEFPNKSDQAHKATGSLRNSQLRGPHGSAYNGGVGLA--NPYQQLDSP 400
Query: 421 KSALSSSNSYLKGPCTPTL--NGGGNS 445
L N+Y P ++ N GN+
Sbjct: 401 NYCL---NNYALNPAVASMMANQLGNN 424
Score = 285 (105.4 bits), Expect = 7.2e-61, Sum P(2) = 7.2e-61
Identities = 69/266 (25%), Positives = 134/266 (50%)
Query: 696 ELSE-IAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQ 754
EL+E + HV+ S YG R IQ+ +E ++K + +E+ + + D GN+V+Q
Sbjct: 698 ELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQ 757
Query: 755 KFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVV-ELDQQTQMVKELDGHIM 813
K E + + GHV+TLS YGCRVIQ+ +E + D Q+++++E+ +
Sbjct: 758 KCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVS 817
Query: 814 RCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKT 873
+DQ GN+V+Q +E D I+ ++V +S + V+++ L E+
Sbjct: 818 MLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEER 877
Query: 874 QSIMMDEIL------QSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQ 927
+ ++++E+L + + + +DQ+ NYVVQ VLE +R I+ ++ + + +
Sbjct: 878 E-LLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTALKKY 936
Query: 928 KFASNVIEKCLSFGTPAERQALVNEM 953
+ +V+ + ER+ + +
Sbjct: 937 TYGKHVVARIEKLVAAGERRMALQSL 962
Score = 200 (75.5 bits), Expect = 6.4e-52, Sum P(2) = 6.4e-52
Identities = 60/232 (25%), Positives = 114/232 (49%)
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756
+ E+ GHV+ DQ G+ +Q+ +E E + ++L T +G VIQ+
Sbjct: 736 VKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRV 795
Query: 757 FEH----GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHI 812
EH T S+V E ++ V L+ YG V+Q +E + D++T ++KEL G I
Sbjct: 796 LEHCHDPDTQSKVME---EILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKI 852
Query: 813 MRCVRDQNGNHVIQKCIECV-PEDAIQFI--VLTFYDQ---VVTLSTHPYGCRVIQRVLE 866
++ + + ++V++KC+ PE+ + +L D+ + + + V+Q+VLE
Sbjct: 853 VQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLE 912
Query: 867 HCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
C D++ + +++ I + L + YG +VV + + ER ++ LT
Sbjct: 913 TCDDQQRE-LILTRIKVHLTALKKYTYGKHVVARIEKLVAAGERRMALQSLT 963
Score = 44 (20.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSY--ASALGASLSRSTTP 278
LG+ ++ G+P G+ SHSY + G+++S +P
Sbjct: 522 LGAQKSQYGVPYKS--GSPNSHSYYGSPTFGSNMSYPGSP 559
Score = 42 (19.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 612 NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV 643
N L G P GLG + + +G G PV
Sbjct: 178 NGLIGLPGLGLGGKQKSFADIFQADMGHGHPV 209
Score = 42 (19.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 25/78 (32%), Positives = 32/78 (41%)
Query: 592 LSPQKSQ-YGVP----YLNKSGS-LNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRH 645
LSP SQ G P Y GS L+ N G P P P L +P+GSG +
Sbjct: 232 LSPSASQGIGAPSPYSYAAVLGSSLSRN--GTPDPQAIARVPS-PCL--TPIGSGRMSSN 286
Query: 646 GDRNMRFPSGMRNLSGGV 663
RN S ++ G+
Sbjct: 287 DKRNTSNQSPFNGVTSGL 304
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 1888 (669.7 bits), Expect = 3.1e-234, Sum P(3) = 3.1e-234
Identities = 388/615 (63%), Positives = 461/615 (74%)
Query: 428 NSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLXXXXXXXXXXXXXXXXXXXXXLP 487
NS L+G T N GG + +Q + + N +N+ L
Sbjct: 378 NSQLRGAQGSTYNDGGGVATQYQHLDSPNYCLNNYGLNPAVASMMANQLGTNNYS----- 432
Query: 488 PLYENXXXXXXXXGNGLDARTLAS--LGLGPNVMAAAAELQSMNRLGNHT--AGSALQAP 543
P+YEN +G+D+R + G N+ +E +++ R N G+ LQ+
Sbjct: 433 PVYENASAASAMGFSGMDSRLHGGGYVSSGQNL----SESRNLGRFSNRMMGGGTGLQSH 488
Query: 544 LMDPLYLQYLRSNEYAAAQVASLNDPAMDI---GNSYMDLLGLQKAYLGALLSPQKSQYG 600
+ DP+Y QY S + LNDP+MD+ GNSYM++L LQ+AYLGA QKSQYG
Sbjct: 489 MADPMYHQYADSLDL-------LNDPSMDVNFMGNSYMNMLELQRAYLGA----QKSQYG 537
Query: 601 VPYLNKSGSLNNNL-YGNPAFGLGMSYPGGPL----LPNSPVGSGSPVRHGDRNMRFPSG 655
VPY KSGS N++ YG+P FG SYPG PL LPNS V SP+R G+ NMR+PS
Sbjct: 538 VPY--KSGSPNSHTDYGSPTFG---SYPGSPLAHHLLPNSLVSPCSPMRRGEVNMRYPSA 592
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
RN +GGVMG WH +A SLDE F SS+L+EFKSNKT+ FEL+EIAGHVVEFS+DQYGSR
Sbjct: 593 TRNYAGGVMGSWHMDA--SLDEGFGSSMLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSR 650
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
FIQQKLETAT++EKNMV++EIMP AL+LMTDVFGNYVIQKFFEHG Q RELAD+L +
Sbjct: 651 FIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDN 710
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
VL LSLQMYGCRVIQKAIEVV+LDQ+ +MVKELDGH+MRCVRDQNGNHV+QKCIECVPE+
Sbjct: 711 VLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEE 770
Query: 836 AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGN 895
I+FI+ TF+ VVTLSTHPYGCRVIQRVLEHCHD TQS +MDEI+ ++ MLAQDQYGN
Sbjct: 771 NIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGN 830
Query: 896 YVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG 955
YV+QHVLEHGKP ER+ IIK+L G+IVQMSQQKFASNV+EKCL+FG P ER+ LVNEMLG
Sbjct: 831 YVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLG 890
Query: 956 SIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015
+ +ENEPLQ MMKDQFANYVVQKVLETCDDQQ ELIL RIKVHLNALKKYTYGKHIVARV
Sbjct: 891 TTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIVARV 950
Query: 1016 EKLVAAGERRISIMT 1030
EKLVAAGERR+++ +
Sbjct: 951 EKLVAAGERRMALQS 965
Score = 271 (100.5 bits), Expect = 3.1e-234, Sum P(3) = 3.1e-234
Identities = 69/162 (42%), Positives = 93/162 (57%)
Query: 251 PSA-QSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSG 309
PSA Q IG + +SYA+ LG+SLSR+ TPDPQ +AR PSP + G GR SS DKR S
Sbjct: 242 PSASQGIGAPSPYSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRVSSNDKRNTSN 301
Query: 310 PLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDD-RHSLFNLQGDS 368
P NG L +S+++V ALSG+NLS G D+ R Q + +++ R+ +F LQG
Sbjct: 302 QSPFNG---GLNESSDLVNALSGMNLSGSGGLDE----RGQAEQDVEKVRNYMFGLQGGH 354
Query: 369 RHMKQHPFLGRSESGH----LLMHSASHSTKGSYPNMGKSGV 406
+ QH F +S+ LL +S +GS N G GV
Sbjct: 355 NEVNQHGFPNKSDQAQKATGLLRNSQLRGAQGSTYNDG-GGV 395
Score = 262 (97.3 bits), Expect = 3.9e-51, Sum P(3) = 3.9e-51
Identities = 67/266 (25%), Positives = 132/266 (49%)
Query: 696 ELSE-IAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQ 754
EL++ + +V+ S YG R IQ+ +E ++K + +E+ + + D GN+V+Q
Sbjct: 702 ELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQ 761
Query: 755 KFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVV-ELDQQTQMVKELDGHIM 813
K E + + G+V+TLS YGCRVIQ+ +E + D Q++++ E+ I
Sbjct: 762 KCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTIS 821
Query: 814 RCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKT 873
+DQ GN+VIQ +E D I+ ++V +S + V+++ L E+
Sbjct: 822 MLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEER 881
Query: 874 QSIMMDEIL------QSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQ 927
+ +++E+L + + + +DQ+ NYVVQ VLE +R I+ ++ + + +
Sbjct: 882 E-FLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKY 940
Query: 928 KFASNVIEKCLSFGTPAERQALVNEM 953
+ +++ + ER+ + +
Sbjct: 941 TYGKHIVARVEKLVAAGERRMALQSL 966
Score = 205 (77.2 bits), Expect = 3.4e-45, Sum P(3) = 3.4e-45
Identities = 57/229 (24%), Positives = 113/229 (49%)
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756
+ E+ GHV+ DQ G+ +Q+ +E E + ++L T +G VIQ+
Sbjct: 740 VKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRV 799
Query: 757 FEHGTASQVR-ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRC 815
EH + ++ D++ + L+ YG VIQ +E + D++T ++KEL G I++
Sbjct: 800 LEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQM 859
Query: 816 VRDQNGNHVIQKCIECVPEDAIQFIV---LTFYDQ---VVTLSTHPYGCRVIQRVLEHCH 869
+ + ++V++KC+ + +F+V L D+ + + + V+Q+VLE C
Sbjct: 860 SQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 919
Query: 870 DEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
D++ + +++ I + L + YG ++V V + ER ++ LT
Sbjct: 920 DQQRE-LILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLT 967
Score = 140 (54.3 bits), Expect = 3.1e-234, Sum P(3) = 3.1e-234
Identities = 45/121 (37%), Positives = 62/121 (51%)
Query: 16 DYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLF 75
DY +++G L+ EQ+++Q A +LE+ELN++RSGSAPPTV+GS+S+ GLF
Sbjct: 22 DYEKEIGVLLGEQQRRQ----------VEADELERELNLYRSGSAPPTVDGSVSAAGGLF 71
Query: 76 KK------LS---DNKG-GFL-NEEELRADPAXXXXXXXXXXXXXXXXXXXXSKEDWRFT 124
L NKG GF ++EE R DPA S+ED R
Sbjct: 72 SGGGGAPFLEFGGGNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVA 131
Query: 125 Q 125
Q
Sbjct: 132 Q 132
Score = 93 (37.8 bits), Expect = 1.9e-215, Sum P(3) = 1.9e-215
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 186 RQKSIAEIIQDDMSHGAPVXXXXXXXXXXNAFEDAIES------SETQFAHLHHDLSSID 239
+QKS A+I Q DM HG PV N F++ ++S S +Q S
Sbjct: 199 KQKSFADIFQADMGHGHPVTKQPSRPASRNTFDENVDSKNNLSPSASQGIGAPSPYSYAA 258
Query: 240 GLGSSANKQGMPSAQSI 256
LGSS ++ G P Q+I
Sbjct: 259 VLGSSLSRNGTPDPQAI 275
Score = 63 (27.2 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 21/106 (19%), Positives = 49/106 (46%)
Query: 677 ESFASSLLDE---FKSNKTKCFELSEIAGHVVE------FSADQYGSRFIQQKLETATTE 727
+ FAS+++++ F + + F ++E+ G E DQ+ + +Q+ LET +
Sbjct: 862 QKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQ 921
Query: 728 EKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT 773
++ ++ I +L +G +++ + + A + R LT
Sbjct: 922 QRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLT 967
Score = 51 (23.0 bits), Expect = 5.2e-211, Sum P(3) = 5.2e-211
Identities = 22/87 (25%), Positives = 37/87 (42%)
Query: 351 NQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDM 410
++ +++D SLF++ KQH F + SAS S + +G G+GI
Sbjct: 146 DRRKVNDSQSLFSMPPGFDQRKQHEF-------EVEKTSASSSEWDANGLIGLPGLGIGG 198
Query: 411 NNASLMADGHKSALSSSNSYLKGPCTP 437
S AD ++ + + K P P
Sbjct: 199 KQKSF-ADIFQADMGHGHPVTKQPSRP 224
Score = 40 (19.1 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 612 NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV 643
N L G P G+G + + +G G PV
Sbjct: 186 NGLIGLPGLGIGGKQKSFADIFQADMGHGHPV 217
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 1864 (661.2 bits), Expect = 4.8e-205, Sum P(2) = 4.8e-205
Identities = 410/752 (54%), Positives = 507/752 (67%)
Query: 314 NGVSPSLKD-----SAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDS 368
N +SPS S AA+ G +LS +G D + +R + + D
Sbjct: 226 NNLSPSASQGIGAPSPYCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIGSGRVS-SNDK 284
Query: 369 RHMK-QHPF----LGRSESGHLL--MHSASHSTKGSYPNMGKSGVGID-MNNASL-MADG 419
R+ Q PF G +ES L+ + + S G G++ ++ + N + DG
Sbjct: 285 RNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMFGLQDG 344
Query: 420 HKSA----LSSSNSYLKGP--CTPTLNGGGNSPSHHQVMGNMNSAFSNFSLXXXXXXXXX 473
H + + +G C + G +++ G N + S
Sbjct: 345 HNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYALNPAV 404
Query: 474 XXXXXXXXXXXXLPPLYENXXXXXXXXGNGLDARTLAS--LGLGPNVMAAAAELQSMNRL 531
P+YEN + +D+R + G N+ +E +++ R+
Sbjct: 405 ASMMANQLGTNNYSPMYENASATLGY--SAMDSRLHGGSFVSSGQNL----SESRNIGRV 458
Query: 532 GNHT--AGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD--IGNSYMDLLGLQKAY 587
GN G+ + L DP+Y QY R +E A + LNDP+MD GNSYM++L +Q+AY
Sbjct: 459 GNRMMEGGTGHPSHLADPMYHQYARFSENADS-FDLLNDPSMDRNYGNSYMNMLEIQRAY 517
Query: 588 LGALLSPQKSQYGVPYLNKSGSLNNN-LYGNPAFGLGMSYPGGPL----LPNSPVGSGSP 642
LG+ QKSQYG+PY KSGS N++ YG+P FG MSYPG PL +PNS + SP
Sbjct: 518 LGS----QKSQYGLPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSP 571
Query: 643 VRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAG 702
+R G+ NMR+P+ RN +GGVMG WH +A SLDE F SS+L+EFKSNKT+ FELSEIAG
Sbjct: 572 MRRGEVNMRYPAATRNYTGGVMGSWHMDA--SLDEGFGSSMLEEFKSNKTRGFELSEIAG 629
Query: 703 HVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTA 762
HVVEFS+DQYGSRFIQQKLETATT+EKNMV++EIMP+AL+LMTDVFGNYVIQKFFEHG
Sbjct: 630 HVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLP 689
Query: 763 SQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGN 822
Q REL ++L +VL LSLQMYGCRVIQKAIEVV+LDQ+ QMVKELDGH+MRCVRDQNGN
Sbjct: 690 PQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGN 749
Query: 823 HVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL 882
HV+QKCIECVPE+ I+FI+ TF+ VVTLSTHPYGCRVIQRVLEHCH+ TQS +M+EIL
Sbjct: 750 HVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEIL 809
Query: 883 QSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGT 942
+V ML QDQYGNYVVQHVLEHGKP ER+ IIK+L G+IVQMSQQKFASNV+EKCL+FG
Sbjct: 810 STVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGG 869
Query: 943 PAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNAL 1002
P ER+ LVNEMLG+ +ENEPLQ MMKDQFANYVVQKVLETCDDQQ ELIL RIKVHLNAL
Sbjct: 870 PEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNAL 929
Query: 1003 KKYTYGKHIVARVEKLVAAGERRISIMT-PHP 1033
KKYTYGKHIVARVEKLVAAGERR+++ + P P
Sbjct: 930 KKYTYGKHIVARVEKLVAAGERRMALQSLPQP 961
Score = 276 (102.2 bits), Expect = 6.3e-45, Sum P(3) = 6.3e-45
Identities = 66/166 (39%), Positives = 92/166 (55%)
Query: 245 ANKQGMPSA-QSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMD 303
+N PSA Q IG + + YA+ LG+SLSR+ TPDPQ +AR PSP + G GR SS D
Sbjct: 224 SNNNLSPSASQGIGAPSPYCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIGSGRVSSND 283
Query: 304 KRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDD-RHSLF 362
KR S P NGV+ L +S+++V ALSGLNLS G D+ R Q + +++ R+ +F
Sbjct: 284 KRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTGGLDE----RGQAEQDVEKVRNYMF 339
Query: 363 NLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGI 408
LQ + H F RS+ + +GS + SG G+
Sbjct: 340 GLQDGHNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSGV 385
Score = 195 (73.7 bits), Expect = 6.3e-45, Sum P(3) = 6.3e-45
Identities = 60/236 (25%), Positives = 115/236 (48%)
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756
+ E+ GHV+ DQ G+ +Q+ +E E + ++L T +G VIQ+
Sbjct: 732 VKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRV 791
Query: 757 FEH----GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHI 812
EH T S+V E ++ V L+ YG V+Q +E + D++T ++KEL G I
Sbjct: 792 LEHCHNPDTQSKVME---EILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKI 848
Query: 813 MRCVRDQNGNHVIQKCIECV-PEDAIQFI--VLTFYDQ---VVTLSTHPYGCRVIQRVLE 866
++ + + ++V++KC+ PE+ + +L D+ + + + V+Q+VLE
Sbjct: 849 VQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLE 908
Query: 867 HCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIV 922
C D++ + +++ I + L + YG ++V V + ER ++ L +V
Sbjct: 909 TCDDQQRE-LILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLPQPLV 963
Score = 142 (55.0 bits), Expect = 4.8e-205, Sum P(2) = 4.8e-205
Identities = 45/121 (37%), Positives = 61/121 (50%)
Query: 16 DYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLF 75
DY +++G L+ EQ+++Q A +LE+ELN++RSGSAPPTV+GSLS+ GLF
Sbjct: 23 DYEKEIGVLLGEQQRRQ----------VEADELERELNLYRSGSAPPTVDGSLSAAGGLF 72
Query: 76 KKLSD---------NKG-GFL-NEEELRADPAXXXXXXXXXXXXXXXXXXXXSKEDWRFT 124
NKG GF ++EE R DPA S+ED R
Sbjct: 73 SGGGGASFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVA 132
Query: 125 Q 125
Q
Sbjct: 133 Q 133
Score = 48 (22.0 bits), Expect = 7.8e-21, Sum P(3) = 7.8e-21
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSY--ASALGASLSRSTTP 278
LGS ++ G+P G+ SHSY + G+++S +P
Sbjct: 518 LGSQKSQYGLPYKS--GSPNSHSYYGSPTFGSNMSYPGSP 555
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 1502 (533.8 bits), Expect = 1.0e-172, Sum P(3) = 1.0e-172
Identities = 310/495 (62%), Positives = 370/495 (74%)
Query: 538 SALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLG-LQKAYLGALLSPQK 596
S L +P+MDP Y QYL + AA + D ++ I N++ G YL LL+ +
Sbjct: 519 SELHSPVMDPHYSQYLHTASSTAAPI----DHSL-IRNNFGTSNGDTANEYLAMLLAQNR 573
Query: 597 SQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFP--- 653
Q G LN + N+ + +P++ LG Y G L P SP S +NMR
Sbjct: 574 QQLG--NLNAA---NSRFFESPSYDLGNMYLGNHL-P-SP----SKNSRNFQNMRMSQSA 622
Query: 654 SGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYG 713
S M+ GG+ G H + G + + +SLL+ FK+NKT+ ELSEI GHV+EFS DQYG
Sbjct: 623 SMMKVPFGGLQGSSHVDIGSTAE----ASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYG 678
Query: 714 SRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT 773
SRFIQQKLETAT EEKN +F EI+P +LMTDVFGNYVIQKFFEHGT Q +ELA+Q+T
Sbjct: 679 SRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVT 738
Query: 774 GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVP 833
GHVL LSLQMYGCRVIQKA+EVVEL+QQ +MVKELDG +M+CV DQNGNHVIQKCIE +P
Sbjct: 739 GHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLP 798
Query: 834 EDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQY 893
+D IQFI+ +FY +V+ LSTHPYGCRVIQRVLEH D +TQ I+M+EI+ SVC LAQDQY
Sbjct: 799 QDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQY 858
Query: 894 GNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953
GNYV+QH+++HGKPHERS II KL GQIV+MSQQKFASNV+EKCL+FG P ERQ LVNEM
Sbjct: 859 GNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEM 918
Query: 954 LGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVA 1013
LG +ENEPLQ MMKD F NYVVQKVLETCDDQ L LIL+RIKVHLNALK+YTYGKHIVA
Sbjct: 919 LGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIVA 978
Query: 1014 RVEKLVAAGERRISI 1028
RVEKL+ GERRI +
Sbjct: 979 RVEKLITTGERRIGL 993
Score = 283 (104.7 bits), Expect = 1.6e-32, Sum P(4) = 1.6e-32
Identities = 78/294 (26%), Positives = 149/294 (50%)
Query: 675 LDESFASSLLDEFKSNKT--KCFELSE-IAGHVVEFSADQYGSRFIQQKLETATTEEKNM 731
+ + F + ++ +F + T + EL+E + GHV+ S YG R IQ+ LE E++
Sbjct: 709 MTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQAR 768
Query: 732 VFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQK 791
+ +E+ + + D GN+VIQK E ++ + G VL LS YGCRVIQ+
Sbjct: 769 MVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQR 828
Query: 792 AIEVVELDQQTQMV--KELDGHIMRCVRDQNGNHVIQKCIEC-VPEDAIQFIVLTFYDQV 848
+E ++ D +TQ + +E+ + +DQ GN+VIQ I+ P + + I+ Q+
Sbjct: 829 VLEHID-DIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSE-IINKLAGQI 886
Query: 849 VTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL------QSVCMLAQDQYGNYVVQHVL 902
V +S + V+++ L E+ Q ++++E+L + + + +D +GNYVVQ VL
Sbjct: 887 VKMSQQKFASNVVEKCLTFGGPEERQ-VLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVL 945
Query: 903 EHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGS 956
E + I+ ++ + + + + +++ + T ER+ ++ L +
Sbjct: 946 ETCDDQSLALILSRIKVHLNALKRYTYGKHIVARVEKLITTGERRIGLSSSLAA 999
Score = 120 (47.3 bits), Expect = 1.0e-172, Sum P(3) = 1.0e-172
Identities = 57/228 (25%), Positives = 102/228 (44%)
Query: 186 RQKSIAEIIQDDMSHGAPVXXXXXXXXXXNAFEDAIESSE-TQFAHLHHD--LSSIDGLG 242
R+KS A+I+Q+ + A + N F D +++ + F+ D L+ D L
Sbjct: 222 RRKSFADILQEGLERDAALGSQLSRPASCNTFRDMKDAAVLSNFSAGGFDSPLAFHDSLH 281
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
S+A P+ +G S + + + R+ TPD L+ R+ + +P G R +
Sbjct: 282 STAKNS--PNTM-LG--------STMSSPVPRNRTPDSHLVGRSTASGLPPIGT-RVGPV 329
Query: 303 DKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLF 362
+K+ G N S + D A+ LS LN+S +EN+ +SQ Q E++++ +
Sbjct: 330 EKKNTFGTAIQNCESYTAADVAD---TLSRLNMSEMSQV-KENHMQSQLQVELENQSDVM 385
Query: 363 NL--QGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSY-PNMGKSGVG 407
G + ++Q + HL SA++ Y ++G S VG
Sbjct: 386 RYIPNGHKKALRQQNTAETKD--HLF--SANYGGMSGYGASLGASTVG 429
Score = 94 (38.1 bits), Expect = 1.0e-172, Sum P(3) = 1.0e-172
Identities = 31/115 (26%), Positives = 52/115 (45%)
Query: 26 REQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLF--KKLSDNK- 82
R Q++ + L + + + + E+++++ RSGSAPPTVEG L ++D + SD++
Sbjct: 27 RFQRELESLLQQHRNQQSFGRERERDIDVHRSGSAPPTVEGLLRAMDNQYLNNNNSDHRD 86
Query: 83 -GGF-----------LNEEELRADPAXXXXXXXXXXXXXXXXXXXXSKEDWRFTQ 125
G L+++ELR P S+EDWR Q
Sbjct: 87 VGNISSITTSNGVELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVAQ 141
Score = 41 (19.5 bits), Expect = 1.6e-32, Sum P(4) = 1.6e-32
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 613 NLYGNPAFG--LGMSYPG--GPL-LPNSPVGSGSPVRHGDRNMRFPSGMRNLS---GGVM 664
N G +G LG S G G + +P S S D + G+ +++ G +
Sbjct: 412 NYGGMSGYGASLGASTVGSHGQVNIPKRTSSSASLYSTSDHSRLGSVGLSDVNIRNGNIN 471
Query: 665 GPWHSEAGGSLDESFASSLLDEFKS 689
G S AGG + ++ +SL + + +
Sbjct: 472 GTDFSTAGGYMAKNKLNSLAEHYSA 496
Score = 40 (19.1 bits), Expect = 2.0e-32, Sum P(4) = 2.0e-32
Identities = 47/219 (21%), Positives = 80/219 (36%)
Query: 379 RSESGHLLMHSASHSTKGSYPNMGKSGVGI---DMNNASLMADGHKSALSSSNSYLKGPC 435
R+ S L ++ HS GS +G S V I ++N G A + NS +
Sbjct: 439 RTSSSASLYSTSDHSRLGS---VGLSDVNIRNGNINGTDFSTAGGYMAKNKLNSLAEHYS 495
Query: 436 TPT--LNGGGNSPSHHQVMGNMNSAFSNFSLXXXXXXXXXXXXXXXXXXXXXLPPLYENX 493
L G G+ S ++++ + S + + L + N
Sbjct: 496 AEGSHLTGDGDRQSLNRLINQVASELHSPVMDPHYSQYLHTASSTAAPIDHSL--IRNNF 553
Query: 494 XXXXXXXGNGLDARTLAS--LGLGPNVMAAAAEL-QSMNR-LGNHTAGSALQAPLMDPLY 549
N A LA LG N+ AA + +S + LGN G+ L +P +
Sbjct: 554 GTSNGDTANEYLAMLLAQNRQQLG-NLNAANSRFFESPSYDLGNMYLGNHLPSPSKNSRN 612
Query: 550 LQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYL 588
Q +R ++ A+ G+S++D+ +A L
Sbjct: 613 FQNMRMSQSASMMKVPFGGLQ---GSSHVDIGSTAEASL 648
Score = 37 (18.1 bits), Expect = 5.9e-164, Sum P(3) = 5.9e-164
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 400 NMGKSGVGIDMNNAS----LMADGHKSALSSSNS 429
N +S + +++ N S + +GHK AL N+
Sbjct: 368 NHMQSQLQVELENQSDVMRYIPNGHKKALRQQNT 401
Score = 37 (18.1 bits), Expect = 1.1e-155, Sum P(2) = 1.1e-155
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 547 PLYLQYLRSNEYA 559
P YL Y SNE++
Sbjct: 111 PEYLSYYYSNEHS 123
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 1227 (437.0 bits), Expect = 3.5e-135, Sum P(3) = 3.5e-135
Identities = 256/496 (51%), Positives = 324/496 (65%)
Query: 532 GNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGAL 591
G ++G + + L+DP LQY + + A G +G + L
Sbjct: 459 GVSSSGQNIPS-LVDPFQLQYFQQAQ-VDAYAPPFQSSTDSFGQKDQQAVGYMANH-EPL 515
Query: 592 LSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPL----LPNSPVGSGSPVRHGD 647
SP YG L + N P + YPG PL +P+SPVG G G
Sbjct: 516 NSPLSPGYG---LQSPRHMGNYFAVPPGVRVMPQYPGSPLASPVMPSSPVG-GMMSHFGR 571
Query: 648 RN-MRF-PSGMRNLSGGVMGPWHSEAGGS---LDESFASSLLDEFKSNKTKCFELSEIAG 702
R+ R+ G +G G W GG+ +D+ S LDE KS + ELS+IAG
Sbjct: 572 RSETRYHQQGPSRNTGIYPGGWQGNRGGASSIVDDLKRHSFLDELKSPNARKLELSDIAG 631
Query: 703 HVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTA 762
VVEFS DQ+GSRFIQQKLE + EEK VF E++PQA LMTDVFGNYVIQKF EHGT
Sbjct: 632 RVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTP 691
Query: 763 SQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGN 822
+Q EL QL G +++LSLQMYGCRVIQKA+EV+++DQ+T++++ELDG++++CVRDQNGN
Sbjct: 692 AQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGN 751
Query: 823 HVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL 882
HVIQKCIE +P I F++ F QV TLSTHPYGCRVIQR+LEHC D++ ++DEIL
Sbjct: 752 HVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEIL 811
Query: 883 QSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGT 942
+S LA DQYGNYV QHVLE GKP ER II+KLTG +VQMSQ K+ASNV+EKCL
Sbjct: 812 ESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHAD 871
Query: 943 PAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNAL 1002
ER+ L+ E++G EE+ L MMKDQFANYVVQKVLE DQQ E+++ R+K+HL +L
Sbjct: 872 STEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSL 931
Query: 1003 KKYTYGKHIVARVEKL 1018
+KYTYGKHIVAR E+L
Sbjct: 932 RKYTYGKHIVARFEQL 947
Score = 259 (96.2 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 74/264 (28%), Positives = 128/264 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
EL+D + G V+ S+ +G R IQ+ +E +++ + E+ + + D GN+VIQ
Sbjct: 625 ELSD-IAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQ 683
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDEILQSV 885
K IE + +V Q+V+LS YGCRVIQ+ LE D+KT+ I E+ +V
Sbjct: 684 KFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIR--ELDGNV 741
Query: 886 CMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSF-GTPA 944
+DQ GN+V+Q +E +I GQ+ +S + VI++ L
Sbjct: 742 LKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDE 801
Query: 945 ERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKK 1004
E +++E+L E + DQ+ NYV Q VLE + I+ ++ ++ + +
Sbjct: 802 ETHCIIDEIL------ESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQ 855
Query: 1005 YTYGKHIVARVEKLVAAGERRISI 1028
+ Y ++V + + + ER I
Sbjct: 856 HKYASNVVEKCLEHADSTEREFLI 879
Score = 132 (51.5 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 32/153 (20%), Positives = 73/153 (47%)
Query: 691 KTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGN 750
+T C + EI + DQYG+ Q LE +E+ + +++ + + + +
Sbjct: 802 ETHCI-IDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYAS 860
Query: 751 YVIQKFFEHGTASQVRELADQLTG------HVLTLSLQMYGCRVIQKAIEVVELDQQTQ- 803
V++K EH +++ L +++ G H+L + + V+QK +E+ + DQQ +
Sbjct: 861 NVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISK-DQQREI 919
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDA 836
+V+ + H+ + G H++ + + E++
Sbjct: 920 LVQRMKIHLQSLRKYTYGKHIVARFEQLFGEES 952
Score = 103 (41.3 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 25/118 (21%), Positives = 58/118 (49%)
Query: 907 PHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVM 966
P+ R + + G++V+ S + S I++ L + E+ ++ +E+L + +
Sbjct: 619 PNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASK------L 672
Query: 967 MKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGER 1024
M D F NYV+QK +E Q E ++ ++ + +L YG ++ + +++ ++
Sbjct: 673 MTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQK 730
Score = 75 (31.5 bits), Expect = 3.5e-135, Sum P(3) = 3.5e-135
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 56 RSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLN--------EEELRADPA 96
RS SAPP++EGS +++ L K+ + L+ EEE+R+DPA
Sbjct: 59 RSESAPPSMEGSFAALRNLLKQQEGSSSEVLSRAIENYDSEEEIRSDPA 107
Score = 58 (25.5 bits), Expect = 3.5e-135, Sum P(3) = 3.5e-135
Identities = 45/189 (23%), Positives = 77/189 (40%)
Query: 186 RQKSIAEIIQDDMSHG-APVXXXXXXXXXXNAFED--AIESSETQFAHLHH----DLSSI 238
R+KSIA++IQ+D + V +D AI SS+T H D++S+
Sbjct: 190 RRKSIADMIQEDFPLTLSSVFKRPHSAGNRPIAQDIHAI-SSDTSSEHARRLPESDINSV 248
Query: 239 DGLGS--SANKQGMPSAQSIGTS-ASHSYASALGASLS--RSTTPDPQLMARAPSPRIPT 293
+ L S + + S T AS S+ +A L+ +++ D L SP
Sbjct: 249 NLLRETDSLSSDAIASEDPFTTDLASQSFTNAQTERLNARQASHEDNNLSVFGASPPSSV 308
Query: 294 AGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQH 353
A R + D+++ +P P S+ V A S +S + ++ +S +
Sbjct: 309 ASRMRRNQEDQQSQGRRMP-----PQYTPSSYQVQASSPQQMSYPRIGGTQDMMQSLPKI 363
Query: 354 EIDDRHSLF 362
+ HS F
Sbjct: 364 ATGEVHSTF 372
Score = 53 (23.7 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 29/114 (25%), Positives = 49/114 (42%)
Query: 298 RASSMDKRTVSGPLPLNGVS--PSLKDSAEIVAALSGLNLSTDGVADQENNSRSQN---Q 352
+ + +D +G P S PS++ S AAL L +G + + + +N +
Sbjct: 43 KRNRLDSGDQTGKFPSRSESAPPSMEGS---FAALRNLLKQQEGSSSEVLSRAIENYDSE 99
Query: 353 HEI--DDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASH--STKGSYPNMG 402
EI D + + L + + + P L E+ HLL H + S S+ NMG
Sbjct: 100 EEIRSDPAYVAYYLSNINLNPRLPPPLISRENQHLLRHFGDNNQSPTTSWDNMG 153
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 1092 (389.5 bits), Expect = 2.5e-120, Sum P(3) = 2.5e-120
Identities = 229/432 (53%), Positives = 303/432 (70%)
Query: 593 SPQKSQYGVPYLNK-SGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMR 651
+P+ + +L + G N+N+ P G+G++Y G + PN G V++ ++
Sbjct: 432 APESQKDDPKFLRQIRGPSNSNM-ARP--GMGVNYYG--IQPNM----GIMVQYLPTHLG 482
Query: 652 FPSGMRNLSGGVMGP-WHSEAGGSLDESFASSL---LDEFKSNKTKCFELSEIAGHVVEF 707
P ++ P W + GSL+ + L L+E KS K + F+LS+I GH+VEF
Sbjct: 483 PPLSPGHVPYVEAYPGWQPQ--GSLEGANGPRLCNFLEELKSGKGRRFDLSDITGHIVEF 540
Query: 708 SADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRE 767
SADQ+GSRFIQQKLE EEK VF+EI+P A LMTDVFGNYVIQKFFE+G ++Q +E
Sbjct: 541 SADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKE 600
Query: 768 LADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQK 827
LADQL G ++ LSLQMYGCRVIQKA++V+E DQ+ ++ +ELDG +MRCVRDQNGNHVIQK
Sbjct: 601 LADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQK 660
Query: 828 CIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHC-HDEKTQSIMMDEILQSVC 886
CIE +P D + F++ F QV +LS HPYGCRVIQR+LE C HD + + I +EIL+SVC
Sbjct: 661 CIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFIT-EEILESVC 719
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
+L++DQYGNYV QHVLE G ER I +KL+G IVQ+S KFASNVIEKCL +G ER
Sbjct: 720 VLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVER 779
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCD-DQQLELILNRIKVHLNALKKY 1005
++ E+ G E L +MMKDQ+ NYVVQK+ ETC DQ+L L +R+++H +ALKKY
Sbjct: 780 DLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLF-SRVRMHASALKKY 838
Query: 1006 TYGKHIVARVEK 1017
TYGKHIV+R+E+
Sbjct: 839 TYGKHIVSRLEQ 850
Score = 260 (96.6 bits), Expect = 1.9e-22, Sum P(4) = 1.9e-22
Identities = 71/259 (27%), Positives = 129/259 (49%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L+D +TGH++ S +G R IQ+ +E + +++ + +E+ H + + D GN+VIQ
Sbjct: 529 DLSD-ITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQ 587
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDEILQSV 885
K E + + Q+V LS YGCRVIQ+ L+ D++ + + E+ V
Sbjct: 588 KFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVR--LARELDGQV 645
Query: 886 CMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAE 945
+DQ GN+V+Q +E+ + ++ GQ+ +S + VI++ L +
Sbjct: 646 MRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDH 705
Query: 946 RQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKY 1005
+ + E E E + V+ KDQ+ NYV Q VLE ++ E I ++ H+ L +
Sbjct: 706 QCRFITE-----EILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLH 760
Query: 1006 TYGKHIVARVEKLVAAGER 1024
+ +++ EK + G R
Sbjct: 761 KFASNVI---EKCLEYGGR 776
Score = 229 (85.7 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 107/440 (24%), Positives = 176/440 (40%)
Query: 541 QAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYG 600
Q DP+Y+QY + + +A N + S D +L + P S
Sbjct: 402 QPSFPDPMYMQYCQQSFGQMEPLAPRNHT--NAPESQKD----DPKFLRQIRGPSNSNMA 455
Query: 601 VPYLNKSGSLNNNLYG-NPAFGLGMSY-P---GGPLLPNS-PVGSGSP------VRHGDR 648
P + N YG P G+ + Y P G PL P P P G
Sbjct: 456 RP------GMGVNYYGIQPNMGIMVQYLPTHLGPPLSPGHVPYVEAYPGWQPQGSLEGAN 509
Query: 649 NMRFPSGMRNLSGGVMGPWH-SEAGGSLDESFA----SSLLDEFKSN---KTKCFELSEI 700
R + + L G + S+ G + E A S + + N + K EI
Sbjct: 510 GPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREI 569
Query: 701 AGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHG 760
H + D +G+ IQ+ E + ++ + ++M Q + L ++G VIQK +
Sbjct: 570 LPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVI 629
Query: 761 TASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQN 820
Q LA +L G V+ G VIQK IE + D+ M+ G +
Sbjct: 630 EPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPY 689
Query: 821 GNHVIQKCIE-CVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMD 879
G VIQ+ +E C + +FI + V LS YG V Q VLE E+ + I
Sbjct: 690 GCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGR- 748
Query: 880 EILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG------QIVQMSQQKFASNV 933
++ + L+ ++ + V++ LE+G ER IIK++ G ++ M + ++ + V
Sbjct: 749 KLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYV 808
Query: 934 IEKCLSFGTPAERQALVNEM 953
++K T +R L + +
Sbjct: 809 VQKIFETCTADQRLTLFSRV 828
Score = 210 (79.0 bits), Expect = 5.5e-17, Sum P(4) = 5.5e-17
Identities = 61/227 (26%), Positives = 103/227 (45%)
Query: 657 RNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRF 716
R L G VM + G + + ++ ++K F L G V S YG R
Sbjct: 639 RELDGQVMRCVRDQNGNHVIQK----CIENIPADKVG-FMLYAFRGQVSSLSMHPYGCRV 693
Query: 717 IQQKLETATTEEK-NMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
IQ+ LE + + + + +EI+ L D +GNYV Q E GT+ + + +L+GH
Sbjct: 694 IQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGH 753
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG------HIMRCVRDQNGNHVIQKCI 829
++ LSL + VI+K +E ++ ++KE+ G ++ ++DQ GN+V+QK
Sbjct: 754 IVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIF 813
Query: 830 ECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSI 876
E D + L + YG ++ R LE E+ Q +
Sbjct: 814 ETCTADQRLTLFSRVRMHASALKKYTYGKHIVSR-LEQPSIEENQEL 859
Score = 67 (28.6 bits), Expect = 2.5e-120, Sum P(3) = 2.5e-120
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 56 RSGSAPPTVEGSLSSIDGLFKK 77
RSGSAPP +EGS ++D L +
Sbjct: 27 RSGSAPPNMEGSFLAVDNLLSR 48
Score = 60 (26.2 bits), Expect = 2.5e-120, Sum P(3) = 2.5e-120
Identities = 24/111 (21%), Positives = 46/111 (41%)
Query: 330 LSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFL-GRSESGHLLMH 388
LS LST ++ +S+ + + + DR +++ F + SG H
Sbjct: 117 LSQGKLSTHKEVSEDESSQQLSVNSVSDRTDGLDIRLSPGSQSLADFRQDDTSSGQTPQH 176
Query: 389 SASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTL 439
S S+S+ G +SG ++++ ++ D S +S K P T+
Sbjct: 177 SRSNSSNGEVNTADESGNFSELSDDVVVKDNAASTARASIGNEKSPDESTI 227
Score = 50 (22.7 bits), Expect = 1.9e-22, Sum P(4) = 1.9e-22
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 533 NHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSY--MDLLGLQKAYLGA 590
NHT +A ++ DP +L+ +R + ++ P M + N Y +G+ YL
Sbjct: 428 NHT--NAPESQKDDPKFLRQIRGPSNS-----NMARPGMGV-NYYGIQPNMGIMVQYLPT 479
Query: 591 LLSPQKSQYGVPYL 604
L P S VPY+
Sbjct: 480 HLGPPLSPGHVPYV 493
Score = 47 (21.6 bits), Expect = 5.7e-119, Sum P(3) = 5.7e-119
Identities = 23/114 (20%), Positives = 45/114 (39%)
Query: 186 RQKSIAEIIQDDMSHGAPVXXXXXXXXXXNAFEDAIESSETQFAHLHHDLSSIDGLGSSA 245
+Q S+ + D + G + + +D S +T H +S +G ++A
Sbjct: 135 QQLSVNSV--SDRTDGLDIRLSPGSQSLADFRQDDTSSGQTP---QHSRSNSSNGEVNTA 189
Query: 246 NKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQ-LMARAPSPRIPTAGVGR 298
++ G S S + AS AS+ +PD ++++ S I G +
Sbjct: 190 DESGNFSELSDDVVVKDNAASTARASIGNEKSPDESTIISKMKSTNISGPGTAK 243
Score = 43 (20.2 bits), Expect = 1.5e-118, Sum P(3) = 1.5e-118
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 251 PSAQSIGTSASHSYASALGASLSRSTTPDPQLM 283
PSA S+ YA L + + PDP M
Sbjct: 379 PSAGSVVHGGEMQYAEKLYVPPGQPSFPDPMYM 411
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 1021 (364.5 bits), Expect = 6.1e-113, Sum P(4) = 6.1e-113
Identities = 186/338 (55%), Positives = 258/338 (76%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 771 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 830
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 831 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 890
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 891 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 950
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G
Sbjct: 951 IQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 1009
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 1010 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 1069
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1070 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1107
Score = 271 (100.5 bits), Expect = 5.5e-19, Sum P(4) = 5.5e-19
Identities = 103/448 (22%), Positives = 190/448 (42%)
Query: 603 YLNKSGSLN---NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y +F G PL P S +P HG + G
Sbjct: 658 YKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 717
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 718 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 772
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E T ++ + + +++
Sbjct: 773 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA 829
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E L+Q+ + + + GH++ G VIQK +E +P D
Sbjct: 830 AYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 889
Query: 836 AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGN 895
+V V+ G V+Q+ +E C ++ ++D V L+ YG
Sbjct: 890 QQNEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPYGC 948
Query: 896 YVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG 955
V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+ G
Sbjct: 949 RVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 1008
Query: 956 SIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYTYG 1008
++ V+ + +FA+ VV+K + + ++++ + H L + K Y
Sbjct: 1009 NV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYA 1062
Query: 1009 KHIVARVEKLVAAGERRISI--MTPHPA 1034
++V ++ + G+R+I + + PH A
Sbjct: 1063 NYVVQKMIDVAEPGQRKIVMHKIRPHIA 1090
Score = 56 (24.8 bits), Expect = 6.4e-110, Sum P(3) = 6.4e-110
Identities = 36/148 (24%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ L+S + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 589 NNSLNS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 647
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 648 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 702
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 703 SLSSHGSSSSLNLGGLTNGSGRYISAAP 730
Score = 54 (24.1 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
Identities = 47/209 (22%), Positives = 80/209 (38%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 454 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 512
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 513 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 570
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N +S F G ++ + + S S+ G+
Sbjct: 571 PQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 630
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 631 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 659
Score = 48 (22.0 bits), Expect = 6.1e-113, Sum P(4) = 6.1e-113
Identities = 34/135 (25%), Positives = 50/135 (37%)
Query: 515 GPNVMAAAAELQSMNRLG-NHTAGSALQAPLM----DPLYLQYLRSNEYAAAQVASLNDP 569
G V+A AA L N A + L AP+ P+ + + AA AS N
Sbjct: 490 GYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGA 549
Query: 570 AMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSY 626
A + N LG Q+ P + + + SLN+N + F G +
Sbjct: 550 AGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQSSSLFSQGSAQ 608
Query: 627 PGGPLLPNSPVGSGS 641
P N+ +G GS
Sbjct: 609 PA-----NTSLGFGS 618
Score = 47 (21.6 bits), Expect = 6.1e-113, Sum P(4) = 6.1e-113
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 427 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 480
Query: 303 DKRTVSG 309
+ +G
Sbjct: 481 GQGLAAG 487
Score = 43 (20.2 bits), Expect = 6.1e-113, Sum P(4) = 6.1e-113
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 4 DISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPP 62
D + + +++ P+ + + +L Q+QQ L A Q + A A N + +APP
Sbjct: 320 DYNSQQQLFQRPNALA-VQQLTAAQQQQYALAAAHQPHIAGLAPAAFVPNPYIISAAPP 377
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 1033 (368.7 bits), Expect = 1.1e-112, Sum P(4) = 1.1e-112
Identities = 206/402 (51%), Positives = 276/402 (68%)
Query: 617 NPAFGLGMSYPGGPL-LPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSL 675
N FG S PL +P + + + N R + + V GG+
Sbjct: 1030 NNMFGSNSSIFSNPLAIPGTAAVAAAAAAAAAANSRQVAATAAAAAAVAAA-AGGVGGA- 1087
Query: 676 DESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQE 735
+ S LL++F++ + +L ++A H+VEFS DQ+GSRFIQQKLE AT EK MVF E
Sbjct: 1088 PQPGRSRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSE 1147
Query: 736 IMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEV 795
I+ A SLMTDVFGNYVIQKFFE GT Q L Q+ GHVL L+LQMYGCRVIQKA+E
Sbjct: 1148 ILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALES 1207
Query: 796 VELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHP 855
+ +QQ ++V ELDGH+++CV+DQNGNHV+QKCIECV A+QFI+ F QV +LSTHP
Sbjct: 1208 ISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHP 1267
Query: 856 YGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIK 915
YGCRVIQR+LEHC E+T I+ DE+ + L QDQYGNYV+QHVLEHGK ++S +I
Sbjct: 1268 YGCRVIQRILEHCTAEQTTPIL-DELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILIN 1326
Query: 916 KLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYV 975
+ G+++ +SQ KFASNV+EKC++ T ER L++E+ + +N L VMMKDQ+ANYV
Sbjct: 1327 SVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVC-TFNDNA-LHVMMKDQYANYV 1384
Query: 976 VQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
VQK+++ + QL+ ++ +I+ H+ AL+KYTYGKHI A++EK
Sbjct: 1385 VQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEK 1426
Score = 271 (100.5 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 71/261 (27%), Positives = 127/261 (48%)
Query: 764 QVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
Q+R+LA+ H++ S +G R IQ+ +E ++ + E+ + D GN+
Sbjct: 1108 QLRDLAN----HIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNY 1163
Query: 824 VIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ 883
VIQK E + + + V+ L+ YGCRVIQ+ LE E+ Q I+ E+
Sbjct: 1164 VIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIV-HELDG 1222
Query: 884 SVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTP 943
V +DQ GN+VVQ +E P II GQ+ +S + VI++ L T
Sbjct: 1223 HVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTA 1282
Query: 944 AERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALK 1003
+ +++E+ +E + +++DQ+ NYV+Q VLE + +++N ++ + L
Sbjct: 1283 EQTTPILDEL------HEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLS 1336
Query: 1004 KYTYGKHIVARVEKLVAAGER 1024
++ + ++V + GER
Sbjct: 1337 QHKFASNVVEKCVTHATRGER 1357
Score = 114 (45.2 bits), Expect = 0.00090, Sum P(4) = 0.00090
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
++ L IV+ SQ + S I++ L T AE+Q + +E+L + +M D F N
Sbjct: 1109 LRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYS------LMTDVFGN 1162
Query: 974 YVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERR 1025
YV+QK E +Q + ++K H+ L YG ++ + + ++ +++
Sbjct: 1163 YVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQ 1214
Score = 62 (26.9 bits), Expect = 2.1e-111, Sum P(3) = 2.1e-111
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 566 LNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQY----GVPYLNKSGSLNNN----LYG- 616
L P Y+ + G +GA + P ++QY V N++ ++ + L+
Sbjct: 325 LGPPGAGGPQDYVYMGGQTTVPMGAAMMPPQNQYMNSSAVAAANRNAAITTSTAKKLWEK 384
Query: 617 NPAFGLGMSYPGGPLLPNSPVGSGSP 642
+ G+ S PGGPL P G G P
Sbjct: 385 SDGKGVSSSTPGGPLHPLQIPGIGDP 410
Score = 56 (24.8 bits), Expect = 1.1e-112, Sum P(4) = 1.1e-112
Identities = 19/79 (24%), Positives = 27/79 (34%)
Query: 331 SGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHL--LMH 388
+GL + G Q+ + Q QH +L N HM + G S H MH
Sbjct: 253 NGLGIQHPGQQQQQQQQQQQQQHPGQYNANLLNHAAALGHMSSYAQSGGSMYDHHGGAMH 312
Query: 389 SASHSTKGSYPNMGKSGVG 407
+ +G G G
Sbjct: 313 PGMNGGMPKQQPLGPPGAG 331
Score = 53 (23.7 bits), Expect = 1.1e-112, Sum P(4) = 1.1e-112
Identities = 27/91 (29%), Positives = 38/91 (41%)
Query: 555 SNEYAAAQVASLNDP-AMDIGNSYMDLLGLQKA-YLGALLSPQKSQYGV-PYLNKSGSLN 611
S ++ AAQ + N A SY+ G + A Y+G + + Q YGV P+ G
Sbjct: 732 SQQFLAAQQQAQNAAYAAQQATSYVINPGQEAAPYMGMIAAAQMPYYGVAPW----GMYP 787
Query: 612 NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSP 642
NL P G + P PL P+ P
Sbjct: 788 GNLI--PQQG---TQPRRPLTPSQQGAENQP 813
Score = 49 (22.3 bits), Expect = 1.2e-108, Sum P(3) = 1.2e-108
Identities = 22/102 (21%), Positives = 43/102 (42%)
Query: 200 HGAPVXXXXXXXXXXNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTS 259
+G+ V D+ + S + F+ D +S G+ ++AN ++ ++
Sbjct: 882 NGSSVGGLALNTSSLTGRRDSFDRSTSAFSPSTMDYTS-SGVAAAAN--------AVNST 932
Query: 260 ASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASS 301
+ + A+A A+ +R P M+ A S G G AS+
Sbjct: 933 VAQAAAAAAAAAAARGKWPGA--MSGAASGAYGALGAGNASA 972
Score = 43 (20.2 bits), Expect = 4.4e-109, Sum P(3) = 4.4e-109
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 26 REQKQQQHLQEATQVNSASAA 46
++Q+QQQ Q+ Q++ A+A+
Sbjct: 712 QQQQQQQQQQQQQQMHMAAAS 732
Score = 42 (19.8 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 617 NPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS 674
NP + PGGP P + +G P G M SG+ GG G ++ GGS
Sbjct: 119 NPPMNPANAAPGGP--PGNG-SNGGPGAIGTIGMG--SGLGGGGGGGAGGGNN--GGS 169
Score = 39 (18.8 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 23/97 (23%), Positives = 36/97 (37%)
Query: 216 AFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRS 275
A +A+ S+ Q A ++ G A G S A ++ AS LGA +
Sbjct: 924 AAANAVNSTVAQAAAAAAAAAAARGKWPGA-MSGAASGAYGALGAGNASASPLGAPI--- 979
Query: 276 TTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLP 312
TP P + R P A + ++ + LP
Sbjct: 980 -TPPPSAQSCLLGSRAPGAESRQRQQQQQQLAAVGLP 1015
Score = 38 (18.4 bits), Expect = 8.7e-111, Sum P(4) = 8.7e-111
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 18 VEDLGKLIREQKQQQHLQEATQVNS 42
++ G+ ++Q+QQQ Q Q N+
Sbjct: 257 IQHPGQQQQQQQQQQQQQHPGQYNA 281
Score = 38 (18.4 bits), Expect = 4.3e-20, Sum P(4) = 4.3e-20
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 655 GMRNLSGGVMGPWHSEAGGS 674
GM GGV+G + GGS
Sbjct: 573 GMGGGLGGVVGSGNGVGGGS 592
Score = 37 (18.1 bits), Expect = 1.1e-112, Sum P(4) = 1.1e-112
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 436 TPTLNGGGNSPSHHQVMGNM 455
+P LN P+H + GN+
Sbjct: 632 SPMLNHQAAGPNHMESPGNL 651
Score = 37 (18.1 bits), Expect = 8.7e-111, Sum P(4) = 8.7e-111
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 240 GLGSSANKQGMPSAQSIGTSASHSYASALGA 270
GL + A +A + +++ S A+A+GA
Sbjct: 669 GLAAVATNAAAAAAAAAAATSAASAAAAVGA 699
Score = 37 (18.1 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 26 REQKQQQHLQEATQ 39
++Q+QQ H+ A+Q
Sbjct: 720 QQQQQQMHMAAASQ 733
Score = 37 (18.1 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 22 GKLIREQKQQQHLQEATQ 39
G L + Q+QQQ Q+ Q
Sbjct: 705 GSLQQSQQQQQQQQQQQQ 722
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 1010 (360.6 bits), Expect = 8.7e-112, Sum P(4) = 8.7e-112
Identities = 186/340 (54%), Positives = 258/340 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 831 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 890
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 891 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 950
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGC
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 1010
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
RVIQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++
Sbjct: 1011 RVIQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1069
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQ 977
G ++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQ
Sbjct: 1070 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1129
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
K+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1130 KMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169
Score = 268 (99.4 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 104/450 (23%), Positives = 191/450 (42%)
Query: 603 YLNKSGSLN---NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y +F G PL P S +P HG + G
Sbjct: 718 YKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 777
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 778 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 832
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E T ++ + + +++
Sbjct: 833 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA 889
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E L+Q+ + + + GH++ G VIQK +E +P D
Sbjct: 890 AYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 949
Query: 836 --AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQY 893
I +V V+ G V+Q+ +E C ++ ++D V L+ Y
Sbjct: 950 QQVINEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPY 1008
Query: 894 GNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953
G V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+
Sbjct: 1009 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1068
Query: 954 LGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYT 1006
G++ V+ + +FA+ VV+K + + ++++ + H L + K
Sbjct: 1069 RGNV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQ 1122
Query: 1007 YGKHIVARVEKLVAAGERRISI--MTPHPA 1034
Y ++V ++ + G+R+I + + PH A
Sbjct: 1123 YANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1152
Score = 56 (24.8 bits), Expect = 9.2e-109, Sum P(3) = 9.2e-109
Identities = 36/148 (24%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ L+S + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 649 NNSLNS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 707
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 708 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 762
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 763 SLSSHGSSSSLNLGGLTNGSGRYISAAP 790
Score = 54 (24.1 bits), Expect = 1.5e-108, Sum P(3) = 1.5e-108
Identities = 47/209 (22%), Positives = 80/209 (38%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 514 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 572
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 573 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 630
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N +S F G ++ + + S S+ G+
Sbjct: 631 PQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 690
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 691 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 719
Score = 48 (22.0 bits), Expect = 8.7e-112, Sum P(4) = 8.7e-112
Identities = 34/135 (25%), Positives = 50/135 (37%)
Query: 515 GPNVMAAAAELQSMNRLG-NHTAGSALQAPLM----DPLYLQYLRSNEYAAAQVASLNDP 569
G V+A AA L N A + L AP+ P+ + + AA AS N
Sbjct: 550 GYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGA 609
Query: 570 AMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSY 626
A + N LG Q+ P + + + SLN+N + F G +
Sbjct: 610 AGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQSSSLFSQGSAQ 668
Query: 627 PGGPLLPNSPVGSGS 641
P N+ +G GS
Sbjct: 669 PA-----NTSLGFGS 678
Score = 47 (21.6 bits), Expect = 8.7e-112, Sum P(4) = 8.7e-112
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 487 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 540
Query: 303 DKRTVSG 309
+ +G
Sbjct: 541 GQGLAAG 547
Score = 43 (20.2 bits), Expect = 8.7e-112, Sum P(4) = 8.7e-112
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 4 DISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPP 62
D + + +++ P+ + + +L Q+QQ L A Q + A A N + +APP
Sbjct: 380 DYNSQQQLFQRPNALA-VQQLTAAQQQQYALAAAHQPHIAGLAPAAFVPNPYIISAAPP 437
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 1021 (364.5 bits), Expect = 8.2e-110, Sum P(3) = 8.2e-110
Identities = 186/338 (55%), Positives = 258/338 (76%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 769 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 828
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 829 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 888
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 889 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 948
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G
Sbjct: 949 IQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 1007
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 1008 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 1067
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1068 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1105
Score = 284 (105.0 bits), Expect = 6.9e-20, Sum P(3) = 6.9e-20
Identities = 123/540 (22%), Positives = 226/540 (41%)
Query: 515 GPNVMAAAAELQSMNRLG-NHTAGSALQAPLM----DPLYLQYLRSNEYAAAQVASLNDP 569
G V+A AA L N A + L AP+ P+ + + AA AS N
Sbjct: 567 GYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGA 626
Query: 570 AMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSY 626
A + N LG Q+ P + + + SLN+N + F G +
Sbjct: 627 AGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQSSSLFSQGSAQ 685
Query: 627 PGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVM---GPWHSEAGGSLDESFASSL 683
P N+ +G GS G + G +GG+ G + S A G+ + ++S
Sbjct: 686 PA-----NTSLGFGSSSSLG-ATLGSALGGFGTAGGLTNGSGRYISAAPGAEAKYRSASS 739
Query: 684 LDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSL 743
S + F S + + + SR ++ + N+ +EI +
Sbjct: 740 ASSLFSPSSTLFSSSRLRYGMSDVMPSGR-SRLLE---DFRNNRYPNLQLREIAGHIMEF 795
Query: 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
D G+ IQ E T ++ + + +++ L + ++G VIQK E L+Q+
Sbjct: 796 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 855
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
+ + + GH++ G VIQK +E +P D +V V+ G V+Q+
Sbjct: 856 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQK 915
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+E C ++ ++D V L+ YG V+Q +LEH P + I+++L Q
Sbjct: 916 CIE-CVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQ 974
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETC 983
+ Q ++ + VI+ L G P ++ +V E+ G++ V+ + +FA+ VV+K +
Sbjct: 975 LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV------LVLSQHKFASNVVEKCVTHA 1028
Query: 984 DDQQLELILNRIKV-----H--LNALKKYTYGKHIVARVEKLVAAGERRISI--MTPHPA 1034
+ ++++ + H L + K Y ++V ++ + G+R+I + + PH A
Sbjct: 1029 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1088
Score = 55 (24.4 bits), Expect = 8.2e-110, Sum P(3) = 8.2e-110
Identities = 24/101 (23%), Positives = 43/101 (42%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRAS 300
L + N+QG + + +A +S A A G L+ P L AP+ G +
Sbjct: 531 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVL---APAAYYDQTGALVVN 586
Query: 301 SMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVA 341
+ + + P+ L +P + S+ AA++ S +G A
Sbjct: 587 AGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGAA 627
Score = 47 (21.6 bits), Expect = 5.7e-109, Sum P(3) = 5.7e-109
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 504 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 557
Query: 303 DKRTVSG 309
+ +G
Sbjct: 558 GQGLAAG 564
Score = 46 (21.3 bits), Expect = 7.2e-109, Sum P(3) = 7.2e-109
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 232 HHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASL 272
++ L+S + SS QG SAQ TS +S+LGA+L
Sbjct: 666 NNSLNS-NSQSSSLFSQG--SAQPANTSLGFGSSSSLGATL 703
Score = 43 (20.2 bits), Expect = 8.2e-110, Sum P(3) = 8.2e-110
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 4 DISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPP 62
D + + +++ P+ + + +L Q+QQ L A Q + A A N + +APP
Sbjct: 397 DYNSQQQLFQRPNALA-VQQLTAAQQQQYALAAAHQPHIAGLAPAAFVPNPYIISAAPP 454
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 1026 (366.2 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
Identities = 196/343 (57%), Positives = 260/343 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++ K K ELS+I GH+ EFS DQ GSR IQQK+E A+ EEK +VF E++
Sbjct: 442 SQLLEDFRNLKMK-LELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAV 500
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
SLMTDVFGNYV+QKFFEHGT Q R LAD+L+GH+L+L+LQMYGCRVIQKAIE +ELD+
Sbjct: 501 HSLMTDVFGNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDK 560
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
Q ++ EL+GHI++CV DQNGNHVIQKCIE +P IQFI+ +F+ + L+THPYGCRV
Sbjct: 561 QILLIGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRV 620
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC +++ I+ DE+++ L QDQYGNYV+QHVLE+G P ++SAI+ KL GQ
Sbjct: 621 IQRILEHCAEKQVAPIL-DELMRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQ 679
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG---SIEENEPLQVMMKDQFANYVVQ 977
I +SQ KFASNVIEKC+ G AER ++NE+LG S + L ++KD +ANYV+Q
Sbjct: 680 IYNLSQHKFASNVIEKCVQHGCTAERILIINEILGDANSPNSSNVLLKILKDPYANYVIQ 739
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVA 1020
K+L+ + Q ++I+NRI+ + LKK T GKHI++R+EK A
Sbjct: 740 KILDIVEPAQRDMIINRIQPFVPTLKKVTPGKHIISRIEKYSA 782
Score = 248 (92.4 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 64/262 (24%), Positives = 127/262 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
EL+D + GH+ S G R+IQ+ IE L+++ + E+ + + D GN+V+Q
Sbjct: 456 ELSD-IKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNYVLQ 514
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
K E + + + +++L+ YGCRVIQ+ +E +K Q +++ E+ +
Sbjct: 515 KFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDK-QILLIGELNGHIV 573
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
DQ GN+V+Q +E H II G I Q++ + VI++ L +
Sbjct: 574 QCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQV 633
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT 1006
+++E++ +++DQ+ NYV+Q VLE + I+ +++ + L ++
Sbjct: 634 APILDELMRCAVS------LVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQHK 687
Query: 1007 YGKHIVARVEKLVAAGERRISI 1028
+ +++ + + ER + I
Sbjct: 688 FASNVIEKCVQHGCTAERILII 709
Score = 55 (24.4 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
Identities = 24/107 (22%), Positives = 40/107 (37%)
Query: 343 QENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPF--LGRSESGHLLMHSASHSTKGSYPN 400
Q+++ Q QH +H +H QHP L S + L HS S + N
Sbjct: 208 QQHHHHQQQQHHHHHQH-----HHQQQHHNQHPVVTLSSSPTSSSLSHSPSTIVTLNNNN 262
Query: 401 MGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPS 447
S + ++ N + +G + S N +P N+P+
Sbjct: 263 -SNSNINSNITNNATGNNGGMNKPVSINLNTSTHSSPNSQSSPNTPN 308
Score = 49 (22.3 bits), Expect = 4.5e-109, Sum P(3) = 4.5e-109
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 272 LSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS 331
++++ +P ++A AP+P + + S + S P P SPS S+ + +A +
Sbjct: 344 INQTLSPSSTIVANAPAPNVVLSNNSTNSVVSS---SSPPPTTS-SPSSLSSSSLSSAAT 399
Query: 332 GLNLST 337
+T
Sbjct: 400 TTTTTT 405
Score = 45 (20.9 bits), Expect = 1.2e-108, Sum P(3) = 1.2e-108
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPS 288
SS + S S T+ + + + A+ ++STTP P + PS
Sbjct: 384 SSPSSLSSSSLSSAATTTTTTTTTTT-ATATQSTTPPPPPVTSTPS 428
Score = 37 (18.1 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 17 YVEDLGKLIREQKQQQH 33
Y+ + +L ++Q+QQ H
Sbjct: 68 YINEQQQLQQQQQQQHH 84
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 1010 (360.6 bits), Expect = 1.3e-109, Sum P(3) = 1.3e-109
Identities = 186/340 (54%), Positives = 258/340 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 831 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAA 890
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 891 YQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 950
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGC
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 1010
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
RVIQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++
Sbjct: 1011 RVIQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1069
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQ 977
G ++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQ
Sbjct: 1070 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1129
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
K+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1130 KMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169
Score = 265 (98.3 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 101/432 (23%), Positives = 187/432 (43%)
Query: 615 YGNPAFGLGMSYPG-GPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGG 673
Y + +GM P GP +P S S HG + G+ N SG + + G
Sbjct: 738 YSSSPGPVGMPLPSQGPGHSQTPPPSLSS--HGSSSSLNLGGLTNGSGRYIS---AAPGA 792
Query: 674 SLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVF 733
ASS F + T F S + + + SR ++ + N+
Sbjct: 793 EAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SRLLE---DFRNNRYPNLQL 847
Query: 734 QEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI 793
+EI + D G+ IQ E TA++ + + +++ L + ++G VIQK
Sbjct: 848 REIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFF 907
Query: 794 EVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED--AIQFIVLTFYDQVVTL 851
E +Q+ + + + GH++ G VIQK +E +P D I +V V+
Sbjct: 908 EFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKC 967
Query: 852 STHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERS 911
G V+Q+ +E C ++ ++D V L+ YG V+Q +LEH P +
Sbjct: 968 VKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 1026
Query: 912 AIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQF 971
I+++L Q+ Q ++ + VI+ L G P ++ +V E+ G++ V+ + +F
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV------LVLSQHKF 1080
Query: 972 ANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYTYGKHIVARVEKLVAAGER 1024
A+ VV+K + + ++++ + H L + K Y ++V ++ + G+R
Sbjct: 1081 ASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQR 1140
Query: 1025 RISI--MTPHPA 1034
+I + + PH A
Sbjct: 1141 KIVMHKIRPHIA 1152
Score = 64 (27.6 bits), Expect = 1.3e-109, Sum P(3) = 1.3e-109
Identities = 38/148 (25%), Positives = 60/148 (40%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ LSS + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 649 NNSLSS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 707
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + SL S+ G+ L + G +
Sbjct: 708 RDSLTG---SSDLYKRTSSSLAPIGHSFYSSLSYSSS--PGPVGMPLPSQGPGHSQTPPP 762
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 763 SLSSHGSSSSLNLGGLTNGSGRYISAAP 790
Score = 53 (23.7 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
Identities = 47/209 (22%), Positives = 79/209 (37%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 514 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 572
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 573 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 630
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N S F G ++ + + S S+ G+
Sbjct: 631 PQPQQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 690
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 691 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 719
Score = 43 (20.2 bits), Expect = 1.3e-109, Sum P(3) = 1.3e-109
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 4 DISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPP 62
D + + +++ P+ + + +L Q+QQ L A Q + A A N + +APP
Sbjct: 380 DYNSQQQLFQRPNALA-VQQLTAAQQQQYALAAAHQPHIAGLAPAAFVPNPYIISAAPP 437
Score = 43 (20.2 bits), Expect = 2.1e-107, Sum P(3) = 2.1e-107
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SA +Q P AQ GAS R TP+ + P + A V A +
Sbjct: 487 NSATQQSAPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 540
Query: 303 DKRTVSG 309
+ +G
Sbjct: 541 GQGLAAG 547
Score = 42 (19.8 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 27 EQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEG-SLSSIDGLFKKLSDNKGGF 85
+Q+ +L ++ + S + + ++F GSA P S L L GGF
Sbjct: 634 QQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGF 693
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 1021 (364.5 bits), Expect = 1.7e-109, Sum P(3) = 1.7e-109
Identities = 186/338 (55%), Positives = 258/338 (76%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 588 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 647
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 648 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 707
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 708 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 767
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G
Sbjct: 768 IQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 826
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 827 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 886
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 887 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 924
Score = 271 (100.5 bits), Expect = 2.4e-19, Sum P(3) = 2.4e-19
Identities = 103/448 (22%), Positives = 190/448 (42%)
Query: 603 YLNKSGSLN---NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y +F G PL P S +P HG + G
Sbjct: 475 YKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 534
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 535 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 589
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E T ++ + + +++
Sbjct: 590 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA 646
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E L+Q+ + + + GH++ G VIQK +E +P D
Sbjct: 647 AYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 706
Query: 836 AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGN 895
+V V+ G V+Q+ +E C ++ ++D V L+ YG
Sbjct: 707 QQNEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPYGC 765
Query: 896 YVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG 955
V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+ G
Sbjct: 766 RVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 825
Query: 956 SIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYTYG 1008
++ V+ + +FA+ VV+K + + ++++ + H L + K Y
Sbjct: 826 NV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYA 879
Query: 1009 KHIVARVEKLVAAGERRISI--MTPHPA 1034
++V ++ + G+R+I + + PH A
Sbjct: 880 NYVVQKMIDVAEPGQRKIVMHKIRPHIA 907
Score = 56 (24.8 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 36/148 (24%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ L+S + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 406 NNSLNS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 464
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 465 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 519
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 520 SLSSHGSSSSLNLGGLTNGSGRYISAAP 547
Score = 54 (24.1 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 47/209 (22%), Positives = 80/209 (38%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 271 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 329
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 330 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 387
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N +S F G ++ + + S S+ G+
Sbjct: 388 PQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 447
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 448 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 476
Score = 48 (22.0 bits), Expect = 1.7e-109, Sum P(3) = 1.7e-109
Identities = 34/135 (25%), Positives = 50/135 (37%)
Query: 515 GPNVMAAAAELQSMNRLG-NHTAGSALQAPLM----DPLYLQYLRSNEYAAAQVASLNDP 569
G V+A AA L N A + L AP+ P+ + + AA AS N
Sbjct: 307 GYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGA 366
Query: 570 AMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSY 626
A + N LG Q+ P + + + SLN+N + F G +
Sbjct: 367 AGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQSSSLFSQGSAQ 425
Query: 627 PGGPLLPNSPVGSGS 641
P N+ +G GS
Sbjct: 426 PA-----NTSLGFGS 435
Score = 47 (21.6 bits), Expect = 1.7e-109, Sum P(3) = 1.7e-109
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 244 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 297
Query: 303 DKRTVSG 309
+ +G
Sbjct: 298 GQGLAAG 304
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 1021 (364.5 bits), Expect = 1.7e-109, Sum P(3) = 1.7e-109
Identities = 186/338 (55%), Positives = 258/338 (76%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 889
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 890 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 949
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 950 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1009
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G
Sbjct: 1010 IQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 1068
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 1069 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 1128
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1129 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166
Score = 271 (100.5 bits), Expect = 6.7e-19, Sum P(3) = 6.7e-19
Identities = 103/448 (22%), Positives = 190/448 (42%)
Query: 603 YLNKSGSLN---NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y +F G PL P S +P HG + G
Sbjct: 717 YKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 776
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 777 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 831
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E T ++ + + +++
Sbjct: 832 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA 888
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E L+Q+ + + + GH++ G VIQK +E +P D
Sbjct: 889 AYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 948
Query: 836 AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGN 895
+V V+ G V+Q+ +E C ++ ++D V L+ YG
Sbjct: 949 QQNEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPYGC 1007
Query: 896 YVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG 955
V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+ G
Sbjct: 1008 RVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 1067
Query: 956 SIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYTYG 1008
++ V+ + +FA+ VV+K + + ++++ + H L + K Y
Sbjct: 1068 NV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYA 1121
Query: 1009 KHIVARVEKLVAAGERRISI--MTPHPA 1034
++V ++ + G+R+I + + PH A
Sbjct: 1122 NYVVQKMIDVAEPGQRKIVMHKIRPHIA 1149
Score = 56 (24.8 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 36/148 (24%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ L+S + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 648 NNSLNS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 706
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 707 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 761
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 762 SLSSHGSSSSLNLGGLTNGSGRYISAAP 789
Score = 54 (24.1 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 47/209 (22%), Positives = 80/209 (38%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 513 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 571
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 572 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 629
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N +S F G ++ + + S S+ G+
Sbjct: 630 PQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 689
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 690 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 718
Score = 48 (22.0 bits), Expect = 1.7e-109, Sum P(3) = 1.7e-109
Identities = 34/135 (25%), Positives = 50/135 (37%)
Query: 515 GPNVMAAAAELQSMNRLG-NHTAGSALQAPLM----DPLYLQYLRSNEYAAAQVASLNDP 569
G V+A AA L N A + L AP+ P+ + + AA AS N
Sbjct: 549 GYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGA 608
Query: 570 AMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSY 626
A + N LG Q+ P + + + SLN+N + F G +
Sbjct: 609 AGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQSSSLFSQGSAQ 667
Query: 627 PGGPLLPNSPVGSGS 641
P N+ +G GS
Sbjct: 668 PA-----NTSLGFGS 677
Score = 47 (21.6 bits), Expect = 1.7e-109, Sum P(3) = 1.7e-109
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 486 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 539
Query: 303 DKRTVSG 309
+ +G
Sbjct: 540 GQGLAAG 546
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 1011 (360.9 bits), Expect = 3.5e-109, Sum P(3) = 3.5e-109
Identities = 186/340 (54%), Positives = 258/340 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 804 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 863
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 864 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 923
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGC
Sbjct: 924 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 983
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
RVIQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++
Sbjct: 984 RVIQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1042
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQ 977
G ++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQ
Sbjct: 1043 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1102
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
K+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1103 KMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1142
Score = 255 (94.8 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 95/393 (24%), Positives = 168/393 (42%)
Query: 641 SPVRHGDRN-MRFPS--GMRNLSGGVMGPWHSEAGG-SLDESFASSLLDEFKSNKTKCFE 696
+P+ H N + F S G + GP HS+ SL +SS L+
Sbjct: 699 TPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRY 758
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756
+S G ++ + S ++ ++MP S + + F N
Sbjct: 759 ISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNL 818
Query: 757 FEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV 816
Q+RE+A GH++ S +G R IQ +E ++ + E+ + +
Sbjct: 819 -------QLREIA----GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLM 867
Query: 817 RDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHC-HDEKTQS 875
D GN+VIQK E + + V++L+ YGCRVIQ+ LE D++ +
Sbjct: 868 VDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVIN 927
Query: 876 IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIE 935
M+ E+ V +DQ GN+VVQ +E +P II GQ+ +S + VI+
Sbjct: 928 EMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQ 987
Query: 936 KCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRI 995
+ L P + ++ E+ E+ +++DQ+ NYV+Q VLE + I+ I
Sbjct: 988 RILEHCLPDQTLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1041
Query: 996 KVHLNALKKYTYGKHIVARVEKLVAAGERRISI 1028
+ ++ L ++ + ++V + + ER + I
Sbjct: 1042 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLI 1074
Score = 139 (54.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 34/116 (29%), Positives = 62/116 (53%)
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
++++ G I++ SQ + S I+ L TPAERQ + NE+L + + +M D F N
Sbjct: 820 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQ------LMVDVFGN 873
Query: 974 YVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIM 1029
YV+QK E +Q + RI+ H+ +L YG ++ + + + + ++ I+ M
Sbjct: 874 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEM 929
Score = 59 (25.8 bits), Expect = 3.5e-109, Sum P(3) = 3.5e-109
Identities = 37/148 (25%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ LSS + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 622 NNSLSS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 680
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 681 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 735
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 736 SLSSHGSSSSLNLGGLTNGSGRYISAAP 763
Score = 55 (24.4 bits), Expect = 9.2e-109, Sum P(3) = 9.2e-109
Identities = 39/192 (20%), Positives = 75/192 (39%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRAS 300
L + N+QG + + +A +S A A G L+ P L AP+ G +
Sbjct: 514 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVL---APAAYYDQTGALVVN 569
Query: 301 SMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHS 360
+ + + P+ L +P + S+ AA +G Q +NS + + +S
Sbjct: 570 AGARNGLGAPVRLVAPAPVIISSS---AAQAGTQQPQPQPQQQPSNSLASSSFY--GNNS 624
Query: 361 LFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGH 420
L + S Q G ++ + + S S+ G+ G G + N++ +
Sbjct: 625 LSSNSQSSSLFSQ----GSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 680
Query: 421 KSALSSSNSYLK 432
+ +L+ S+ K
Sbjct: 681 RDSLTGSSDLYK 692
Score = 47 (21.6 bits), Expect = 6.4e-108, Sum P(3) = 6.4e-108
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 487 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 540
Query: 303 DKRTVSG 309
+ +G
Sbjct: 541 GQGLAAG 547
Score = 43 (20.2 bits), Expect = 3.5e-109, Sum P(3) = 3.5e-109
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 4 DISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPP 62
D + + +++ P+ + + +L Q+QQ L A Q + A A N + +APP
Sbjct: 380 DYNSQQQLFQRPNALA-VQQLTAAQQQQYALAAAHQPHIAGLAPAAFVPNPYIISAAPP 437
Score = 40 (19.1 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 27 EQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEG-SLSSIDGLFKKLSDNKGGF 85
+Q+ L ++ + S + + ++F GSA P S L L GGF
Sbjct: 607 QQQPSNSLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGF 666
Score = 37 (18.1 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 881 ILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+L+ +L QD + ++ H E P+ ++ TG Q
Sbjct: 6 VLKRKAVLWQDSFSPHLKHHPQEPANPN-MPVVLTSGTGSQAQ 47
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 1043 (372.2 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 230/515 (44%), Positives = 332/515 (64%)
Query: 511 SLGLGPNVMAAAAELQSMNRLGNHTAGSALQ-APLMDPLYLQYLRSNEYAAAQVASLNDP 569
SLG G + AA +++ G+ SA A + L S+ Y + +SL P
Sbjct: 555 SLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTS---SDLYKRSS-SSLA-P 609
Query: 570 AMDIGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLGM 624
IG + + LG + +G L Q + + P L+ GS +++L+ G G+
Sbjct: 610 ---IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-GL 660
Query: 625 SYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSL 683
+ G + +P G+ ++ R+ S + + S + P S + S S L
Sbjct: 661 TNGSGRYISAAP---GAEAKY--RSASGTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRL 715
Query: 684 LDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSL 743
L++F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ MVF EI+ A L
Sbjct: 716 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 775
Query: 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
MTDVFGNYVIQKFFE G+ Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ++
Sbjct: 776 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSE 835
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
MVKELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRVIQR
Sbjct: 836 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 895
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+++
Sbjct: 896 ILEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 954
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLET 982
+SQ KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+++
Sbjct: 955 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1014
Query: 983 CDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ Q ++I+++I+ H++ L+KYTYGKHI+A++EK
Sbjct: 1015 AEPAQRKIIMHKIRPHISTLRKYTYGKHILAKLEK 1049
Score = 267 (99.0 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 74/262 (28%), Positives = 127/262 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 728 QLRD-LIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQ 786
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
K E D + V+ L+ YGCRVIQ+ LE ++ QS M+ E+ V
Sbjct: 787 KFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ-QSEMVKELDGHVL 845
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 846 KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT 905
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT 1006
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 906 LPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 959
Query: 1007 YGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 960 FASNVVEKCVTHASRAERALLI 981
Score = 55 (24.4 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
G P + S+G +S S +A+G++LS + + + A S + +S + KR+ S
Sbjct: 549 GQPGSTSLGFGSSSSLGAAIGSALSGFGS---SVGSSASSSATRRESLSTSSDLYKRSSS 605
Query: 309 GPLPL 313
P+
Sbjct: 606 SLAPI 610
Score = 54 (24.1 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 37/184 (20%), Positives = 70/184 (38%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
GMP Q + +A + AL T + AP+P + ++ +A++ +
Sbjct: 431 GMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAA---AAA 487
Query: 309 GPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDS 368
G G + SL S + G Q+ ++ Q+ + SL N S
Sbjct: 488 G-----GTANSLTGSTNGLFRPIGTQPPPQQQQQQQPSTNLQS-NSFYGSTSLTN-SSQS 540
Query: 369 RHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSN 428
+ H G + G + S S+ G+ SG G + +++ + + +LS+S+
Sbjct: 541 SSLFSH---GPGQPGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSS 597
Query: 429 SYLK 432
K
Sbjct: 598 DLYK 601
Score = 54 (24.1 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 215 NAFEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALG 269
+ F ++ SS + A LS+ L SS G P S+G S+S S L
Sbjct: 573 SGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLP 632
Query: 270 ASL-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
+ S TP P L + S + G+ S
Sbjct: 633 SQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 664
Score = 45 (20.9 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 265 ASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
A A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 301 AGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 344
Score = 38 (18.4 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 283 MARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSP 318
+A A P I AGV A V P ++ P
Sbjct: 290 LATAQQPHIDIAGVFSAGLAPAAFVPNPYIISAAPP 325
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 1041 (371.5 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 230/515 (44%), Positives = 329/515 (63%)
Query: 511 SLGLGPNVMAAAAELQSMNRLGNHTAGSALQ-APLMDPLYLQYLRSNEYAAAQVASLNDP 569
SLG G + AA ++ G+ SA A D L S+ Y + +SL P
Sbjct: 547 SLGFGSSSSLGAAIGSALGGFGSSVGSSASSSATRRDSLSTS---SDLYKRSS-SSLA-P 601
Query: 570 AMDIGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLGM 624
IG + + LG + +G L Q + + P L+ GS +++L+ G G+
Sbjct: 602 ---IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-GL 652
Query: 625 SYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSL 683
+ G + +P G+ ++ R+ S + + + + P S + S S L
Sbjct: 653 TNGSGRYISAAP---GAEAKY--RSAASTSSLFSSTSQLFPPSRLRYSRSDIMPSGRSRL 707
Query: 684 LDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSL 743
L++F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ MVF EI+ A L
Sbjct: 708 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 767
Query: 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
MTDVFGNYVIQKFFE G+ Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ +
Sbjct: 768 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNE 827
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
MVKELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRVIQR
Sbjct: 828 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 887
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+++
Sbjct: 888 ILEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 946
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLET 982
+SQ KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+++
Sbjct: 947 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1006
Query: 983 CDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ Q ++I+++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1007 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1041
Score = 263 (97.6 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 73/262 (27%), Positives = 127/262 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 720 QLRD-LIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQ 778
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
K E D + V+ L+ YGCRVIQ+ LE ++ Q+ M+ E+ V
Sbjct: 779 KFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQ-QNEMVKELDGHVL 837
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 838 KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT 897
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT 1006
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 898 LPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 951
Query: 1007 YGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 952 FASNVVEKCVTHASRAERALLI 973
Score = 56 (24.8 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 45/205 (21%), Positives = 81/205 (39%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRAS 300
L S +QG A+S+ +A+ + A A G L+ P Q++A P+ G
Sbjct: 393 LTPSQGQQGQ-QAESLAAAAAANPALAFGQGLATGM-PGYQVLA--PTAYYDQTGALVVG 448
Query: 301 SMDKRTVSGPLPLNGVSPSLKDSA--EIVAALS--GL--NLS--TDGVADQENNSRSQNQ 352
+ + P+ L +P + SA + AA S G NL+ T+G+ Q Q
Sbjct: 449 PGARTGLGAPVRLVASTPVIISSAAAQAAAAASAGGTANNLTGATNGLFRPLGAQPQQQQ 508
Query: 353 HEIDDRHSLFNLQGDSRHMKQHP----FL-GRSESGHLLMHSASHSTKGSYPNMGKSGVG 407
+ + + G + P F G + G + S S+ G+ G G
Sbjct: 509 QQTNSSLQSNSFYGSNSLTNNSPNSSLFSHGPGQPGSTSLGFGSSSSLGAAIGSALGGFG 568
Query: 408 IDMNNASLMADGHKSALSSSNSYLK 432
+ +++ + + +LS+S+ K
Sbjct: 569 SSVGSSASSSATRRDSLSTSSDLYK 593
Score = 52 (23.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 25/90 (27%), Positives = 35/90 (38%)
Query: 217 FEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALGAS 271
F ++ SS + A LS+ L SS G P S+G S+S S L +
Sbjct: 567 FGSSVGSSASSSATRRDSLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ 626
Query: 272 L-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
S TP P L + S + G+ S
Sbjct: 627 TPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 656
Score = 50 (22.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
G P + S+G +S S +A+G++L + + + A S + +S + KR+ S
Sbjct: 541 GQPGSTSLGFGSSSSLGAAIGSALGGFGS---SVGSSASSSATRRDSLSTSSDLYKRSSS 597
Query: 309 GPLPL 313
P+
Sbjct: 598 SLAPI 602
Score = 46 (21.3 bits), Expect = 6.4e-108, Sum P(2) = 6.4e-108
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 259 SASHSYASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
+A + A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 288 AAQQPHIGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 337
Score = 41 (19.5 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 24/81 (29%), Positives = 30/81 (37%)
Query: 559 AAAQVASLNDPAMDIGNSYMDLLGLQKAY---LGALLSPQKSQYGVPYLNKS----GSLN 611
AAAQ A+ A G + +L G LGA Q+ Q + S SL
Sbjct: 472 AAAQAAA----AASAGGTANNLTGATNGLFRPLGAQPQQQQQQTNSSLQSNSFYGSNSLT 527
Query: 612 NNLYGNPAFGLGMSYPGGPLL 632
NN + F G PG L
Sbjct: 528 NNSPNSSLFSHGPGQPGSTSL 548
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 1041 (371.5 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 230/515 (44%), Positives = 329/515 (63%)
Query: 511 SLGLGPNVMAAAAELQSMNRLGNHTAGSALQ-APLMDPLYLQYLRSNEYAAAQVASLNDP 569
SLG G + AA ++ G+ SA A D L S+ Y + +SL P
Sbjct: 548 SLGFGSSSSLGAAIGSALGGFGSSVGSSASSSATRRDSLSTS---SDLYKRSS-SSLA-P 602
Query: 570 AMDIGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLGM 624
IG + + LG + +G L Q + + P L+ GS +++L+ G G+
Sbjct: 603 ---IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-GL 653
Query: 625 SYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSL 683
+ G + +P G+ ++ R+ S + + + + P S + S S L
Sbjct: 654 TNGSGRYISAAP---GAEAKY--RSAASTSSLFSSTSQLFPPSRLRYSRSDIMPSGRSRL 708
Query: 684 LDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSL 743
L++F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ MVF EI+ A L
Sbjct: 709 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 768
Query: 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
MTDVFGNYVIQKFFE G+ Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ +
Sbjct: 769 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNE 828
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
MVKELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRVIQR
Sbjct: 829 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 888
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+++
Sbjct: 889 ILEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 947
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLET 982
+SQ KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+++
Sbjct: 948 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1007
Query: 983 CDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ Q ++I+++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1008 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1042
Score = 263 (97.6 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 73/262 (27%), Positives = 127/262 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 721 QLRD-LIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQ 779
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
K E D + V+ L+ YGCRVIQ+ LE ++ Q+ M+ E+ V
Sbjct: 780 KFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQ-QNEMVKELDGHVL 838
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 839 KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT 898
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT 1006
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 899 LPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 952
Query: 1007 YGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 953 FASNVVEKCVTHASRAERALLI 974
Score = 56 (24.8 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 45/205 (21%), Positives = 81/205 (39%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRAS 300
L S +QG A+S+ +A+ + A A G L+ P Q++A P+ G
Sbjct: 394 LTPSQGQQGQ-QAESLAAAAAANPALAFGQGLATGM-PGYQVLA--PTAYYDQTGALVVG 449
Query: 301 SMDKRTVSGPLPLNGVSPSLKDSA--EIVAALS--GL--NLS--TDGVADQENNSRSQNQ 352
+ + P+ L +P + SA + AA S G NL+ T+G+ Q Q
Sbjct: 450 PGARTGLGAPVRLVASTPVIISSAAAQAAAAASAGGTANNLTGATNGLFRPLGAQPQQQQ 509
Query: 353 HEIDDRHSLFNLQGDSRHMKQHP----FL-GRSESGHLLMHSASHSTKGSYPNMGKSGVG 407
+ + + G + P F G + G + S S+ G+ G G
Sbjct: 510 QQTNSSLQSNSFYGSNSLTNNSPNSSLFSHGPGQPGSTSLGFGSSSSLGAAIGSALGGFG 569
Query: 408 IDMNNASLMADGHKSALSSSNSYLK 432
+ +++ + + +LS+S+ K
Sbjct: 570 SSVGSSASSSATRRDSLSTSSDLYK 594
Score = 52 (23.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 25/90 (27%), Positives = 35/90 (38%)
Query: 217 FEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALGAS 271
F ++ SS + A LS+ L SS G P S+G S+S S L +
Sbjct: 568 FGSSVGSSASSSATRRDSLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ 627
Query: 272 L-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
S TP P L + S + G+ S
Sbjct: 628 TPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 657
Score = 50 (22.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
G P + S+G +S S +A+G++L + + + A S + +S + KR+ S
Sbjct: 542 GQPGSTSLGFGSSSSLGAAIGSALGGFGS---SVGSSASSSATRRDSLSTSSDLYKRSSS 598
Query: 309 GPLPL 313
P+
Sbjct: 599 SLAPI 603
Score = 45 (20.9 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 265 ASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
A A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 295 AGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 338
Score = 41 (19.5 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 24/81 (29%), Positives = 30/81 (37%)
Query: 559 AAAQVASLNDPAMDIGNSYMDLLGLQKAY---LGALLSPQKSQYGVPYLNKS----GSLN 611
AAAQ A+ A G + +L G LGA Q+ Q + S SL
Sbjct: 473 AAAQAAA----AASAGGTANNLTGATNGLFRPLGAQPQQQQQQTNSSLQSNSFYGSNSLT 528
Query: 612 NNLYGNPAFGLGMSYPGGPLL 632
NN + F G PG L
Sbjct: 529 NNSPNSSLFSHGPGQPGSTSL 549
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 1014 (362.0 bits), Expect = 9.2e-109, Sum P(3) = 9.2e-109
Identities = 212/454 (46%), Positives = 303/454 (66%)
Query: 573 IGNSYMDLLGLQKAY--LGALL---SPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYP 627
IG+S+ + LG + +G L P SQ P L+ GS ++ G G++
Sbjct: 728 IGHSFYNGLGFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLG------GLTNG 781
Query: 628 GGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSLLDE 686
G + +P G+ ++ R+ S + + S + G S + S S LL++
Sbjct: 782 SGRYISAAP---GAEAKY--RSASSASSLFSPSSTLFPSSRLRYGMSDVMPSGRSRLLED 836
Query: 687 FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTD 746
F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A LM D
Sbjct: 837 FRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVD 896
Query: 747 VFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQT--QM 804
VFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQQ +M
Sbjct: 897 VFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEM 956
Query: 805 VKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRV 864
V+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRVIQR+
Sbjct: 957 VRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1016
Query: 865 LEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQM 924
LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G ++ +
Sbjct: 1017 LEHCLPEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVL 1075
Query: 925 SQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLETC 983
SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQK+++
Sbjct: 1076 SQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVA 1135
Query: 984 DDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1136 EPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169
Score = 250 (93.1 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 95/393 (24%), Positives = 167/393 (42%)
Query: 641 SPVRHGDRN-MRFPS--GMRNLSGGVMGPWHSEAGG-SLDESFASSLLDEFKSNKTKCFE 696
+P+ H N + F S G + GP HS+ SL +SS L+
Sbjct: 726 TPIGHSFYNGLGFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRY 785
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756
+S G ++ + S + ++MP S + + F N
Sbjct: 786 ISAAPGAEAKYRSASSASSLFSPSSTLFPSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNL 845
Query: 757 FEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV 816
Q+RE+A GH++ S +G R IQ +E ++ + E+ + +
Sbjct: 846 -------QLREIA----GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLM 894
Query: 817 RDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQS 875
D GN+VIQK E + + V++L+ YGCRVIQ+ LE D++ +
Sbjct: 895 VDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVIN 954
Query: 876 IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIE 935
M+ E+ V +DQ GN+VVQ +E +P II GQ+ +S + VI+
Sbjct: 955 EMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQ 1014
Query: 936 KCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRI 995
+ L P + ++ E+ E+ +++DQ+ NYV+Q VLE + I+ I
Sbjct: 1015 RILEHCLPEQTLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1068
Query: 996 KVHLNALKKYTYGKHIVARVEKLVAAGERRISI 1028
+ ++ L ++ + ++V + + ER + I
Sbjct: 1069 RGNVLVLSQHKFASNVVEKCVTHASRTERAMLI 1101
Score = 137 (53.3 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
++++ G I++ SQ + S I+ L TPAERQ + NE+L + + +M D F N
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQ------LMVDVFGN 900
Query: 974 YVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIM 1029
YV+QK E +Q + RI+ H+ +L YG ++ + + + ++ I+ M
Sbjct: 901 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEM 956
Score = 57 (25.1 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 37/148 (25%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ LSS + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 649 NNSLSS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 707
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 708 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLGFSSS--PGPVGMPLPSQGPGHSQTPPP 762
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 763 SLSSHGSSSSLNLGGLTNGSGRYISAAP 790
Score = 52 (23.4 bits), Expect = 9.2e-109, Sum P(3) = 9.2e-109
Identities = 47/209 (22%), Positives = 79/209 (37%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 514 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 572
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 573 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 630
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N S F G ++ + + S S+ G+
Sbjct: 631 PQPQQQPTNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 690
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 691 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 719
Score = 43 (20.2 bits), Expect = 9.2e-109, Sum P(3) = 9.2e-109
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 4 DISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPP 62
D + + +++ P+ + + +L Q+QQ L A Q + A A N + +APP
Sbjct: 380 DYNSQQQLFQRPNALA-VQQLTAAQQQQYALAAAHQPHIAGLAPAAFVPNPYIISAAPP 437
Score = 41 (19.5 bits), Expect = 1.5e-104, Sum P(2) = 1.5e-104
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 28 QKQQQ---HLQEATQVNSASAADLEKELNIFRSGSAPPTVEG-SLSSIDGLFKKLSDNKG 83
Q QQQ +L ++ + S + + ++F GSA P S L L G
Sbjct: 632 QPQQQPTNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALG 691
Query: 84 GF 85
GF
Sbjct: 692 GF 693
Score = 41 (19.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 881 ILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+L+ +L QD + ++ QH + P+ ++ TG Q
Sbjct: 6 VLKRKAVLWQDSFSPHLKQHAQDTANPN-MPVVLTSGTGSQAQ 47
Score = 38 (18.4 bits), Expect = 2.7e-107, Sum P(3) = 2.7e-107
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 269 GASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSG 309
GAS R TP+ + P + A V A + + +G
Sbjct: 508 GAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAFGQGLAAG 547
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 1041 (371.5 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 214/452 (47%), Positives = 306/452 (67%)
Query: 573 IGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLGMSYP 627
IG + + LG + +G L Q + + P L+ GS +++L+ G G++
Sbjct: 549 IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-GLTNG 602
Query: 628 GGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSLLDE 686
G + +P G+ ++ R+ S + + S + P S + S S LL++
Sbjct: 603 SGRYISAAP---GAEAKY--RSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLED 657
Query: 687 FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTD 746
F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ MVF EI+ A LMTD
Sbjct: 658 FRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTD 717
Query: 747 VFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVK 806
VFGNYVIQKFFE G+ Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ++MVK
Sbjct: 718 VFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVK 777
Query: 807 ELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLE 866
ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRVIQR+LE
Sbjct: 778 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILE 837
Query: 867 HCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQ 926
HC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+++ +SQ
Sbjct: 838 HCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQ 896
Query: 927 QKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLETCDD 985
KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+++ +
Sbjct: 897 HKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP 956
Query: 986 QQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
Q ++I+++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 957 AQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 988
Score = 267 (99.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 74/262 (28%), Positives = 127/262 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 667 QLRD-LIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQ 725
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
K E D + V+ L+ YGCRVIQ+ LE ++ QS M+ E+ V
Sbjct: 726 KFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ-QSEMVKELDGHVL 784
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 785 KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT 844
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT 1006
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 845 LPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 898
Query: 1007 YGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 899 FASNVVEKCVTHASRAERALLI 920
Score = 54 (24.1 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 215 NAFEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALG 269
+ F ++ SS + A LS+ L SS G P S+G S+S S L
Sbjct: 512 SGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLP 571
Query: 270 ASL-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
+ S TP P L + S + G+ S
Sbjct: 572 SQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 603
Score = 53 (23.7 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
G P + S+G + +S +A+G++LS + + + A S + +S + KR+ S
Sbjct: 488 GQPGSTSLGFGSGNSLGAAIGSALSGFGS---SVGSSASSSATRRESLSTSSDLYKRSSS 544
Query: 309 GPLPL 313
P+
Sbjct: 545 SLAPI 549
Score = 49 (22.3 bits), Expect = 3.1e-108, Sum P(2) = 3.1e-108
Identities = 36/184 (19%), Positives = 68/184 (36%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
GMP Q + +A + AL T + AP+P + ++ +A++ +
Sbjct: 372 GMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAA---AAA 428
Query: 309 GPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDS 368
G G + SL S + G Q+ S + + SL N S
Sbjct: 429 G-----GTASSLTGSTNGLFRPIGTQPPQQ---QQQQPSTNLQSNSFYGSSSLTN-SSQS 479
Query: 369 RHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSN 428
+ H G + G + S ++ G+ SG G + +++ + + +LS+S+
Sbjct: 480 SSLFSH---GPGQPGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSS 536
Query: 429 SYLK 432
K
Sbjct: 537 DLYK 540
Score = 45 (20.9 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 265 ASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
A A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 239 AGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 282
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 1043 (372.2 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 230/515 (44%), Positives = 331/515 (64%)
Query: 511 SLGLGPNVMAAAAELQSMNRLGNHTAGSALQ-APLMDPLYLQYLRSNEYAAAQVASLNDP 569
SLG G + AA +++ G+ SA A + L S+ Y + +SL P
Sbjct: 550 SLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTS---SDLYKRSS-SSLA-P 604
Query: 570 AMDIGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLGM 624
IG + + LG + +G L Q + + P L+ GS +++L+ G G+
Sbjct: 605 ---IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-GL 655
Query: 625 SYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSL 683
+ G + +P G+ ++ R+ S + + S + P S + S S L
Sbjct: 656 TNGSGRYISAAP---GAEAKY--RSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRL 710
Query: 684 LDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSL 743
L++F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ MVF EI+ A L
Sbjct: 711 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 770
Query: 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
MTDVFGNYVIQKFFE G+ Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ++
Sbjct: 771 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSE 830
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
MVKELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRVIQR
Sbjct: 831 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 890
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+++
Sbjct: 891 ILEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 949
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLET 982
+SQ KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+++
Sbjct: 950 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1009
Query: 983 CDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ Q ++I+++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1010 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1044
Score = 267 (99.0 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 74/262 (28%), Positives = 127/262 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 723 QLRD-LIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQ 781
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
K E D + V+ L+ YGCRVIQ+ LE ++ QS M+ E+ V
Sbjct: 782 KFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ-QSEMVKELDGHVL 840
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 841 KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT 900
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT 1006
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 901 LPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 954
Query: 1007 YGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 955 FASNVVEKCVTHASRAERALLI 976
Score = 55 (24.4 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
G P + S+G +S S +A+G++LS + + + A S + +S + KR+ S
Sbjct: 544 GQPGSTSLGFGSSSSLGAAIGSALSGFGS---SVGSSASSSATRRESLSTSSDLYKRSSS 600
Query: 309 GPLPL 313
P+
Sbjct: 601 SLAPI 605
Score = 54 (24.1 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 215 NAFEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALG 269
+ F ++ SS + A LS+ L SS G P S+G S+S S L
Sbjct: 568 SGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLP 627
Query: 270 ASL-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
+ S TP P L + S + G+ S
Sbjct: 628 SQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 659
Score = 50 (22.7 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 37/184 (20%), Positives = 68/184 (36%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
GMP Q + +A + AL T + AP+P + ++ +A++ +
Sbjct: 429 GMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAA----AAA 484
Query: 309 GPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDS 368
G G + SL S + G Q+ S + + SL N S
Sbjct: 485 G-----GTANSLTGSTNGLFRPIGTQPPPQ---QQQQPSTNLQSNSFYGSTSLTN-SSQS 535
Query: 369 RHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSN 428
+ H G + G + S S+ G+ SG G + +++ + + +LS+S+
Sbjct: 536 SSLFSH---GPGQPGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSS 592
Query: 429 SYLK 432
K
Sbjct: 593 DLYK 596
Score = 49 (22.3 bits), Expect = 1.9e-108, Sum P(2) = 1.9e-108
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 255 SIGTSASHSYASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
++ T+ A A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 289 ALATAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 342
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 1036 (369.7 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 231/518 (44%), Positives = 332/518 (64%)
Query: 510 ASLGLGPNVMAAAAELQSMNRLGNHTAGSALQ-APLMDPLYLQYLRSNEYAAAQVASLND 568
ASLG G AA +++ G+ SA A + L S+ Y + +SL
Sbjct: 387 ASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTS---SDLYKRSS-SSLA- 441
Query: 569 PAMDIGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLG 623
P IG + + LG + +G L Q + + P L+ GS +++L+ G G
Sbjct: 442 P---IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-G 492
Query: 624 MSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASS 682
++ G + +P G+ ++ R+ S + + S + P S + S S
Sbjct: 493 LTNGSGRYISAAP---GAEAKY--RSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSR 547
Query: 683 LLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALS 742
LL++F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ MVF EI+ A
Sbjct: 548 LLEDFRNNRFPNLQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQ 607
Query: 743 LMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQ- 801
LMTDVFGNYVIQKFFE G+ Q LA+++ GHVL L+LQMYGCRVIQKA+E + DQQ
Sbjct: 608 LMTDVFGNYVIQKFFEFGSLDQKLALANRIRGHVLPLALQMYGCRVIQKALESISSDQQV 667
Query: 802 -TQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
++MVKELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 668 ISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 727
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+
Sbjct: 728 IQRILEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 786
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 787 VLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKM 846
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++I+++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 847 IDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 884
Score = 264 (98.0 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 74/263 (28%), Positives = 127/263 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 561 QLRD-LMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQLMTDVFGNYVIQ 619
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDEILQSV 885
K E D + V+ L+ YGCRVIQ+ LE D++ S M+ E+ V
Sbjct: 620 KFFEFGSLDQKLALANRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHV 679
Query: 886 CMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAE 945
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 680 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 739
Query: 946 RQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKY 1005
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 740 TLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQH 793
Query: 1006 TYGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 794 KFASNVVEKCVTHASRAERALLI 816
Score = 151 (58.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 40/117 (34%), Positives = 65/117 (55%)
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
++ L G IV+ SQ + S I++ L TPAERQ + NE++ + + +M D F N
Sbjct: 562 LRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQ------LMTDVFGN 615
Query: 974 YVVQKVLETCD-DQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIM 1029
YV+QK E DQ+L L NRI+ H+ L YG ++ + + +++ ++ IS M
Sbjct: 616 YVIQKFFEFGSLDQKLALA-NRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEM 671
Score = 55 (24.4 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 36/184 (19%), Positives = 67/184 (36%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
GMP Q + +A + AL T + AP+P + ++ +A++ +
Sbjct: 264 GMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAA--AAAA 321
Query: 309 GPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDS 368
G G + SL S + Q+ S + + SL N S
Sbjct: 322 G-----GTANSLTGSTN--GLFRPIGTQPPQQQQQQQPSTNLQSNSFYGSSSLTN-SSQS 373
Query: 369 RHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSN 428
+ H G + G + S S+ G+ SG G + +++ + + +LS+S+
Sbjct: 374 SSLFSH---GPGQPGSASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSS 430
Query: 429 SYLK 432
K
Sbjct: 431 DLYK 434
Score = 55 (24.4 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 39/149 (26%), Positives = 56/149 (37%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
SSA Q +A + G +A+ S G T P Q + PS + + +SS+
Sbjct: 308 SSAAAQAAAAAAAAGGTANSLTGSTNGLFRPIGTQPPQQQQQQQPSTNLQSNSFYGSSSL 367
Query: 303 DKRTVSGPLPLNGV----SPSLK-DSAEIVAALSGLNLSTDGVADQENNSRSQNQHE-ID 356
+ S L +G S SL S + A G LS G + + S S + E +
Sbjct: 368 TNSSQSSSLFSHGPGQPGSASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSATRRESLS 427
Query: 357 DRHSLFNLQGDSRHMKQHPF---LGRSES 382
L+ S PF LG S S
Sbjct: 428 TSSDLYKRSSSSLAPIGQPFYNSLGFSSS 456
Score = 54 (24.1 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 215 NAFEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALG 269
+ F ++ SS + A LS+ L SS G P S+G S+S S L
Sbjct: 406 SGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLP 465
Query: 270 ASL-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
+ S TP P L + S + G+ S
Sbjct: 466 SQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 497
Score = 45 (20.9 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 265 ASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
A A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 131 AGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 174
Score = 44 (20.5 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 29/91 (31%), Positives = 35/91 (38%)
Query: 559 AAAQVASLNDPAMDIGNSYMDLL-GLQKAYLGALLSPQKSQYGVPYLNK-------SGSL 610
AAAQ A+ A NS GL + +G PQ+ Q P N S SL
Sbjct: 310 AAAQAAAAAAAAGGTANSLTGSTNGLFRP-IGTQ-PPQQQQQQQPSTNLQSNSFYGSSSL 367
Query: 611 NNNLYGNPAFGLGMSYPGGPLLPNSPVGSGS 641
N+ + F G PG L GSGS
Sbjct: 368 TNSSQSSSLFSHGPGQPGSASLG---FGSGS 395
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 1010 (360.6 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 186/340 (54%), Positives = 258/340 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 542 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 601
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 602 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 661
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGC
Sbjct: 662 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 721
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
RVIQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++
Sbjct: 722 RVIQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 780
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQ 977
G ++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQ
Sbjct: 781 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 840
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
K+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 841 KMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 880
Score = 268 (99.4 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 104/450 (23%), Positives = 191/450 (42%)
Query: 603 YLNKSGSLN---NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y +F G PL P S +P HG + G
Sbjct: 429 YKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 488
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 489 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 543
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E T ++ + + +++
Sbjct: 544 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA 600
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E L+Q+ + + + GH++ G VIQK +E +P D
Sbjct: 601 AYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 660
Query: 836 --AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQY 893
I +V V+ G V+Q+ +E C ++ ++D V L+ Y
Sbjct: 661 QQVINEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPY 719
Query: 894 GNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953
G V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+
Sbjct: 720 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 779
Query: 954 LGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYT 1006
G++ V+ + +FA+ VV+K + + ++++ + H L + K
Sbjct: 780 RGNV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQ 833
Query: 1007 YGKHIVARVEKLVAAGERRISI--MTPHPA 1034
Y ++V ++ + G+R+I + + PH A
Sbjct: 834 YANYVVQKMIDVAEPGQRKIVMHKIRPHIA 863
Score = 56 (24.8 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 36/148 (24%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ L+S + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 360 NNSLNS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 418
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 419 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 473
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 474 SLSSHGSSSSLNLGGLTNGSGRYISAAP 501
Score = 54 (24.1 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 47/209 (22%), Positives = 80/209 (38%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 225 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 283
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 284 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 341
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N +S F G ++ + + S S+ G+
Sbjct: 342 PQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 401
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 402 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 430
Score = 48 (22.0 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 34/135 (25%), Positives = 50/135 (37%)
Query: 515 GPNVMAAAAELQSMNRLG-NHTAGSALQAPLM----DPLYLQYLRSNEYAAAQVASLNDP 569
G V+A AA L N A + L AP+ P+ + + AA AS N
Sbjct: 261 GYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGA 320
Query: 570 AMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSY 626
A + N LG Q+ P + + + SLN+N + F G +
Sbjct: 321 AGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQSSSLFSQGSAQ 379
Query: 627 PGGPLLPNSPVGSGS 641
P N+ +G GS
Sbjct: 380 PA-----NTSLGFGS 389
Score = 47 (21.6 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 198 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 251
Query: 303 DKRTVSG 309
+ +G
Sbjct: 252 GQGLAAG 258
Score = 40 (19.1 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 20/90 (22%), Positives = 33/90 (36%)
Query: 331 SGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSA 390
SG + D A +Q ++ R + +Q + +Q L + H+ M SA
Sbjct: 70 SGTQVPVDSAAATVGLFDYNSQQQLFQRPNALAVQQLTAAQQQQYALAAAHQPHIGMFSA 129
Query: 391 SHSTKGSYPN---MGKSGVGIDMNNASLMA 417
+ PN + + G D A L A
Sbjct: 130 GLAPAAFVPNPYIISAAPPGTDPYTAGLAA 159
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 1010 (360.6 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 186/340 (54%), Positives = 258/340 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 889
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 890 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 949
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGC
Sbjct: 950 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 1009
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
RVIQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++
Sbjct: 1010 RVIQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1068
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQ 977
G ++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQ
Sbjct: 1069 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1128
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
K+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1129 KMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1168
Score = 268 (99.4 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 104/450 (23%), Positives = 191/450 (42%)
Query: 603 YLNKSGSLN---NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y +F G PL P S +P HG + G
Sbjct: 717 YKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 776
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 777 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 831
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E T ++ + + +++
Sbjct: 832 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA 888
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E L+Q+ + + + GH++ G VIQK +E +P D
Sbjct: 889 AYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 948
Query: 836 --AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQY 893
I +V V+ G V+Q+ +E C ++ ++D V L+ Y
Sbjct: 949 QQVINEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPY 1007
Query: 894 GNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953
G V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+
Sbjct: 1008 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1067
Query: 954 LGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYT 1006
G++ V+ + +FA+ VV+K + + ++++ + H L + K
Sbjct: 1068 RGNV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQ 1121
Query: 1007 YGKHIVARVEKLVAAGERRISI--MTPHPA 1034
Y ++V ++ + G+R+I + + PH A
Sbjct: 1122 YANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1151
Score = 56 (24.8 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 36/148 (24%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ L+S + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 648 NNSLNS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 706
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 707 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 761
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 762 SLSSHGSSSSLNLGGLTNGSGRYISAAP 789
Score = 54 (24.1 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 47/209 (22%), Positives = 80/209 (38%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 513 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 571
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 572 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 629
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N +S F G ++ + + S S+ G+
Sbjct: 630 PQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 689
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 690 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 718
Score = 48 (22.0 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 34/135 (25%), Positives = 50/135 (37%)
Query: 515 GPNVMAAAAELQSMNRLG-NHTAGSALQAPLM----DPLYLQYLRSNEYAAAQVASLNDP 569
G V+A AA L N A + L AP+ P+ + + AA AS N
Sbjct: 549 GYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGA 608
Query: 570 AMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSY 626
A + N LG Q+ P + + + SLN+N + F G +
Sbjct: 609 AGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQSSSLFSQGSAQ 667
Query: 627 PGGPLLPNSPVGSGS 641
P N+ +G GS
Sbjct: 668 PA-----NTSLGFGS 677
Score = 47 (21.6 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 486 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 539
Query: 303 DKRTVSG 309
+ +G
Sbjct: 540 GQGLAAG 546
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 1010 (360.6 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 186/340 (54%), Positives = 258/340 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 866 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 925
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 926 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 985
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGC
Sbjct: 986 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 1045
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
RVIQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++
Sbjct: 1046 RVIQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1104
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQ 977
G ++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQ
Sbjct: 1105 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1164
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
K+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1165 KMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1204
Score = 268 (99.4 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 104/450 (23%), Positives = 191/450 (42%)
Query: 603 YLNKSGSLN---NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y +F G PL P S +P HG + G
Sbjct: 753 YKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 812
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 813 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 867
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E T ++ + + +++
Sbjct: 868 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA 924
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E L+Q+ + + + GH++ G VIQK +E +P D
Sbjct: 925 AYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 984
Query: 836 --AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQY 893
I +V V+ G V+Q+ +E C ++ ++D V L+ Y
Sbjct: 985 QQVINEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPY 1043
Query: 894 GNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953
G V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+
Sbjct: 1044 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1103
Query: 954 LGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYT 1006
G++ V+ + +FA+ VV+K + + ++++ + H L + K
Sbjct: 1104 RGNV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQ 1157
Query: 1007 YGKHIVARVEKLVAAGERRISI--MTPHPA 1034
Y ++V ++ + G+R+I + + PH A
Sbjct: 1158 YANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1187
Score = 56 (24.8 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 36/148 (24%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ L+S + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 684 NNSLNS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 742
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 743 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 797
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 798 SLSSHGSSSSLNLGGLTNGSGRYISAAP 825
Score = 54 (24.1 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 47/209 (22%), Positives = 80/209 (38%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 549 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 607
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 608 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 665
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N +S F G ++ + + S S+ G+
Sbjct: 666 PQPQQQPNNNLASSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 725
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 726 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 754
Score = 48 (22.0 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 34/135 (25%), Positives = 50/135 (37%)
Query: 515 GPNVMAAAAELQSMNRLG-NHTAGSALQAPLM----DPLYLQYLRSNEYAAAQVASLNDP 569
G V+A AA L N A + L AP+ P+ + + AA AS N
Sbjct: 585 GYPVLAPAAYYDQTGALVVNAGARNGLGAPVRLVAPAPVIISSSAAQAAVAAAAASANGA 644
Query: 570 AMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSY 626
A + N LG Q+ P + + + SLN+N + F G +
Sbjct: 645 AGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQSSSLFSQGSAQ 703
Query: 627 PGGPLLPNSPVGSGS 641
P N+ +G GS
Sbjct: 704 PA-----NTSLGFGS 713
Score = 47 (21.6 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 522 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 575
Query: 303 DKRTVSG 309
+ +G
Sbjct: 576 GQGLAAG 582
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 1043 (372.2 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
Identities = 230/515 (44%), Positives = 331/515 (64%)
Query: 511 SLGLGPNVMAAAAELQSMNRLGNHTAGSALQ-APLMDPLYLQYLRSNEYAAAQVASLNDP 569
SLG G + AA +++ G+ SA A + L S+ Y + +SL P
Sbjct: 549 SLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTS---SDLYKRSS-SSLA-P 603
Query: 570 AMDIGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLGM 624
IG + + LG + +G L Q + + P L+ GS +++L+ G G+
Sbjct: 604 ---IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-GL 654
Query: 625 SYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSL 683
+ G + +P G+ ++ R+ S + + S + P S + S S L
Sbjct: 655 TNGSGRYISAAP---GAEAKY--RSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRL 709
Query: 684 LDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSL 743
L++F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ MVF EI+ A L
Sbjct: 710 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 769
Query: 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
MTDVFGNYVIQKFFE G+ Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ++
Sbjct: 770 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSE 829
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
MVKELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRVIQR
Sbjct: 830 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 889
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+++
Sbjct: 890 ILEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 948
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLET 982
+SQ KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+++
Sbjct: 949 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1008
Query: 983 CDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ Q ++I+++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1009 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1043
Score = 267 (99.0 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 74/262 (28%), Positives = 127/262 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 722 QLRD-LIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQ 780
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
K E D + V+ L+ YGCRVIQ+ LE ++ QS M+ E+ V
Sbjct: 781 KFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ-QSEMVKELDGHVL 839
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 840 KCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQT 899
Query: 947 QALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT 1006
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 900 LPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 953
Query: 1007 YGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 954 FASNVVEKCVTHASRAERALLI 975
Score = 55 (24.4 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
G P + S+G +S S +A+G++LS + + + A S + +S + KR+ S
Sbjct: 543 GQPGSTSLGFGSSSSLGAAIGSALSGFGS---SVGSSASSSATRRESLSTSSDLYKRSSS 599
Query: 309 GPLPL 313
P+
Sbjct: 600 SLAPI 604
Score = 54 (24.1 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 215 NAFEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALG 269
+ F ++ SS + A LS+ L SS G P S+G S+S S L
Sbjct: 567 SGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLP 626
Query: 270 ASL-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
+ S TP P L + S + G+ S
Sbjct: 627 SQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 658
Score = 46 (21.3 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
Identities = 36/184 (19%), Positives = 69/184 (37%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
GMP Q + +A + AL T + AP+P + ++ +A++ +
Sbjct: 425 GMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPAPVLISSAAAQAAAA---AAA 481
Query: 309 GPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDS 368
G G + SL S + G Q ++ Q+ + SL + S
Sbjct: 482 G-----GTANSLTGSTNGLFRPIGTQPPQQQQQQQPPSTNLQS-NSFYGSTSLTS-SSQS 534
Query: 369 RHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSN 428
+ H G + G + S S+ G+ SG G + +++ + + +LS+S+
Sbjct: 535 SSLFSH---GPGQPGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSS 591
Query: 429 SYLK 432
K
Sbjct: 592 DLYK 595
Score = 45 (20.9 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 265 ASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
A A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 295 AGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 338
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 1031 (368.0 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 230/518 (44%), Positives = 331/518 (63%)
Query: 510 ASLGLGPNVMAAAAELQSMNRLGNHTAGSALQ-APLMDPLYLQYLRSNEYAAAQVASLND 568
ASLG G AA +++ G+ SA A + L S+ Y + +SL
Sbjct: 549 ASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTS---SDLYKRSS-SSLA- 603
Query: 569 PAMDIGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLG 623
P IG + + LG + +G L Q + + P L+ GS +++L+ G G
Sbjct: 604 P---IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-G 654
Query: 624 MSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASS 682
++ G + +P G+ ++ R+ S + + S + P S + S S
Sbjct: 655 LTNGSGRYISAAP---GAEAKY--RSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSR 709
Query: 683 LLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALS 742
LL++F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ +VF EI+ A
Sbjct: 710 LLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQ 769
Query: 743 LMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQ- 801
LMTDVFGNYVIQKFFE G+ Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ
Sbjct: 770 LMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQV 829
Query: 802 -TQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
++MVKELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 830 ISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 889
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+
Sbjct: 890 IQRILEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 948
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 949 VLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKM 1008
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++I+++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1009 IDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046
Score = 262 (97.3 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 74/263 (28%), Positives = 127/263 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 723 QLRD-LIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQ 781
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDEILQSV 885
K E D + V+ L+ YGCRVIQ+ LE D++ S M+ E+ V
Sbjct: 782 KFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHV 841
Query: 886 CMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAE 945
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 842 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 901
Query: 946 RQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKY 1005
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 902 TLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQH 955
Query: 1006 TYGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 956 KFASNVVEKCVTHASRAERALLI 978
Score = 148 (57.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 40/117 (34%), Positives = 64/117 (54%)
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
++ L G IV+ SQ + S I++ L TPAERQ + NE+L + + +M D F N
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQ------LMTDVFGN 777
Query: 974 YVVQKVLETCD-DQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIM 1029
YV+QK E DQ+L L RI+ H+ L YG ++ + + +++ ++ IS M
Sbjct: 778 YVIQKFFEFGSLDQKLALA-TRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEM 833
Score = 54 (24.1 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 215 NAFEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALG 269
+ F ++ SS + A LS+ L SS G P S+G S+S S L
Sbjct: 568 SGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLP 627
Query: 270 ASL-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
+ S TP P L + S + G+ S
Sbjct: 628 SQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 659
Score = 53 (23.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 37/184 (20%), Positives = 70/184 (38%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
GMP Q + +A + AL T + AP+P + ++ +A++ +
Sbjct: 425 GMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSTAAQAAAA--AAAA 482
Query: 309 GPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDS 368
G G + SL S + G Q+ ++ Q+ + SL N S
Sbjct: 483 G-----GTANSLTGSTNGLFRPIGTQPPQQQQQQQQPSTNLQS-NSFYGSSSLTN-SSQS 535
Query: 369 RHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSN 428
+ H G + G + S S+ G+ SG G + +++ + + +LS+S+
Sbjct: 536 SSLFSH---GPGQPGSASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSS 592
Query: 429 SYLK 432
K
Sbjct: 593 DLYK 596
Score = 51 (23.0 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
G P + S+G + S +A+G++LS + + + A S + +S + KR+ S
Sbjct: 544 GQPGSASLGFGSGSSLGAAIGSALSGFGS---SVGSSASSSATRRESLSTSSDLYKRSSS 600
Query: 309 GPLPL 313
P+
Sbjct: 601 SLAPI 605
Score = 45 (20.9 bits), Expect = 9.2e-107, Sum P(2) = 9.2e-107
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 265 ASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
A A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 294 AGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 337
Score = 41 (19.5 bits), Expect = 3.3e-17, Sum P(3) = 3.3e-17
Identities = 33/115 (28%), Positives = 43/115 (37%)
Query: 536 AGSALQAP--LMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLS 593
A + L AP LM P + + AAA A+ A + S GL + +G
Sbjct: 450 ARTGLGAPVRLMAPTPVLISSTAAQAAAAAAAAGGTANSLTGSTN---GLFRP-IGTQPP 505
Query: 594 PQKSQYGVPYLNK-------SGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGS 641
Q+ Q P N S SL N+ + F G PG L GSGS
Sbjct: 506 QQQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSHGPGQPGSASLG---FGSGS 557
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 1021 (364.5 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/338 (55%), Positives = 258/338 (76%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 588 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAA 647
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 648 YQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 707
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 708 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 767
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G
Sbjct: 768 IQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 826
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 827 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 886
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 887 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 924
Score = 270 (100.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 103/448 (22%), Positives = 191/448 (42%)
Query: 603 YLNKSGSL---NNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y + +F G PL P S +P HG + G
Sbjct: 475 YKRTSSSLAPIGHSFYNSLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 534
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 535 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 589
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E TA++ + + +++
Sbjct: 590 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQA 646
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E +Q+ + + + GH++ G VIQK +E +P D
Sbjct: 647 AYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 706
Query: 836 AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGN 895
+V V+ G V+Q+ +E C ++ ++D V L+ YG
Sbjct: 707 QQNEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPYGC 765
Query: 896 YVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG 955
V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+ G
Sbjct: 766 RVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 825
Query: 956 SIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYTYG 1008
++ V+ + +FA+ VV+K + + ++++ + H L + K Y
Sbjct: 826 NV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYA 879
Query: 1009 KHIVARVEKLVAAGERRISI--MTPHPA 1034
++V ++ + G+R+I + + PH A
Sbjct: 880 NYVVQKMIDVAEPGQRKIVMHKIRPHIA 907
Score = 63 (27.2 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 38/148 (25%), Positives = 60/148 (40%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ LSS + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 406 NNSLSS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 464
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + SL S+ G+ L + G +
Sbjct: 465 RDSLTG---SSDLYKRTSSSLAPIGHSFYNSLSFSSS--PGPVGMPLPSQGPGHSQTPPP 519
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 520 SLSSHGSSSSLNLGGLTNGSGRYISAAP 547
Score = 53 (23.7 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 47/209 (22%), Positives = 79/209 (37%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 271 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 329
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 330 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 387
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N S F G ++ + + S S+ G+
Sbjct: 388 PQPQQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 447
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 448 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 476
Score = 43 (20.2 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SA +Q P AQ GAS R TP+ + P + A V A +
Sbjct: 244 NSATQQSAPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 297
Query: 303 DKRTVSG 309
+ +G
Sbjct: 298 GQGLAAG 304
Score = 42 (19.8 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 27 EQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEG-SLSSIDGLFKKLSDNKGGF 85
+Q+ +L ++ + S + + ++F GSA P S L L GGF
Sbjct: 391 QQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGF 450
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 1030 (367.6 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 214/454 (47%), Positives = 306/454 (67%)
Query: 573 IGNSYMDLLGLQKAY--LGALLSPQKSQYGV---PYLNKSGSLNNNLYGNPAFGLGMSYP 627
IG + + LG + +G L Q + + P L+ GS +++L+ G G++
Sbjct: 605 IGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGS-SSSLH----LG-GLTNG 658
Query: 628 GGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSLLDE 686
G + +P G+ ++ R+ S + + S + P S + S S LL++
Sbjct: 659 SGRYISAAP---GAEAKY--RSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLED 713
Query: 687 FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTD 746
F++N+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT E+ MVF EI+ A LMTD
Sbjct: 714 FRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTD 773
Query: 747 VFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQ--TQM 804
VFGNYVIQKFFE G+ Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ ++M
Sbjct: 774 VFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEM 833
Query: 805 VKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRV 864
VKELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRVIQR+
Sbjct: 834 VKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRI 893
Query: 865 LEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQM 924
LEHC E+T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G+++ +
Sbjct: 894 LEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLAL 952
Query: 925 SQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLETC 983
SQ KFASNV+EKC++ + AER L++E+ + + L MMKDQ+ANYVVQK+++
Sbjct: 953 SQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMA 1012
Query: 984 DDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ Q ++I+++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1013 EPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046
Score = 265 (98.3 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 74/263 (28%), Positives = 127/263 (48%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D L GH++ S +G R IQ+ +E ++ + E+ + + D GN+VIQ
Sbjct: 723 QLRD-LIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQ 781
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDEILQSV 885
K E D + V+ L+ YGCRVIQ+ LE D++ S M+ E+ V
Sbjct: 782 KFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHV 841
Query: 886 CMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAE 945
+DQ GN+VVQ +E +P II GQ+ +S + VI++ L T +
Sbjct: 842 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 901
Query: 946 RQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKY 1005
++ E+ E+ +++DQ+ NYV+Q VLE + I++ I+ + AL ++
Sbjct: 902 TLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQH 955
Query: 1006 TYGKHIVARVEKLVAAGERRISI 1028
+ ++V + + ER + I
Sbjct: 956 KFASNVVEKCVTHASRAERALLI 978
Score = 148 (57.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 40/117 (34%), Positives = 64/117 (54%)
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
++ L G IV+ SQ + S I++ L TPAERQ + NE+L + + +M D F N
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQ------LMTDVFGN 777
Query: 974 YVVQKVLETCD-DQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIM 1029
YV+QK E DQ+L L RI+ H+ L YG ++ + + +++ ++ IS M
Sbjct: 778 YVIQKFFEFGSLDQKLALA-TRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEM 833
Score = 54 (24.1 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 215 NAFEDAIESSETQFAHLHHDLSSIDGL----GSSANKQGMPSAQSIGTSASHS-YASALG 269
+ F ++ SS + A LS+ L SS G P S+G S+S S L
Sbjct: 568 SGFGSSVGSSASSSATRRESLSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLP 627
Query: 270 ASL-SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
+ S TP P L + S + G+ S
Sbjct: 628 SQTPGHSLTPPPSLSSHGSSSSLHLGGLTNGS 659
Score = 53 (23.7 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
G P + S+G + +S +A+G++LS + + + A S + +S + KR+ S
Sbjct: 544 GQPGSTSLGFGSGNSLGAAIGSALSGFGS---SVGSSASSSATRRESLSTSSDLYKRSSS 600
Query: 309 GPLPL 313
P+
Sbjct: 601 SLAPI 605
Score = 49 (22.3 bits), Expect = 4.5e-107, Sum P(2) = 4.5e-107
Identities = 36/184 (19%), Positives = 68/184 (36%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVS 308
GMP Q + +A + AL T + AP+P + ++ +A++ +
Sbjct: 428 GMPGYQVLAPTAYYDQTGALVVGPGARTGLGAPVRLMAPTPVLISSAAAQAAAA---AAA 484
Query: 309 GPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDS 368
G G + SL S + G Q+ S + + SL N S
Sbjct: 485 G-----GTASSLTGSTNGLFRPIGTQPPQQ---QQQQPSTNLQSNSFYGSSSLTN-SSQS 535
Query: 369 RHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSN 428
+ H G + G + S ++ G+ SG G + +++ + + +LS+S+
Sbjct: 536 SSLFSH---GPGQPGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSS 592
Query: 429 SYLK 432
K
Sbjct: 593 DLYK 596
Score = 45 (20.9 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 265 ASALGASLSRST-TPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGP 310
A A L+ + P+P +++ AP P G A++ T++GP
Sbjct: 295 AGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAA---TLAGP 338
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 1022 (364.8 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 186/338 (55%), Positives = 258/338 (76%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 889
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 890 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 949
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 950 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1009
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G
Sbjct: 1010 IQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 1068
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 1069 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 1128
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1129 IDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166
Score = 250 (93.1 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 72/265 (27%), Positives = 128/265 (48%)
Query: 764 QVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
Q+RE+A GH++ S +G R IQ +E ++ + E+ + + D GN+
Sbjct: 845 QLREIA----GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 900
Query: 824 VIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ 883
VIQK E + + V++L+ YGCRVIQ+ LE ++ Q+ M+ E+
Sbjct: 901 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ-QNEMVRELDG 959
Query: 884 SVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTP 943
V +DQ GN+VVQ +E +P II GQ+ +S + VI++ L P
Sbjct: 960 HVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 1019
Query: 944 AERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALK 1003
+ ++ E+ E+ +++DQ+ NYV+Q VLE + I+ I+ ++ L
Sbjct: 1020 DQTLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1073
Query: 1004 KYTYGKHIVARVEKLVAAGERRISI 1028
++ + ++V + + ER + I
Sbjct: 1074 QHKFASNVVEKCVTHASRTERAVLI 1098
Score = 59 (25.8 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 37/148 (25%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ LSS + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 648 NNSLSS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 706
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 707 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 761
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 762 SLSSHGSSSSLNLGGLTNGSGRYISAAP 789
Score = 53 (23.7 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 47/209 (22%), Positives = 79/209 (37%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 513 LTPNQNQQGQQADPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 571
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 572 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 629
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N S F G ++ + + S S+ G+
Sbjct: 630 PQPQQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 689
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 690 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 718
Score = 47 (21.6 bits), Expect = 5.1e-106, Sum P(2) = 5.1e-106
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 486 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQADPLVAAAAVNSALAF 539
Query: 303 DKRTVSG 309
+ +G
Sbjct: 540 GQGLAAG 546
Score = 42 (19.8 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 27 EQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEG-SLSSIDGLFKKLSDNKGGF 85
+Q+ +L ++ + S + + ++F GSA P S L L GGF
Sbjct: 633 QQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGF 692
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 1022 (364.8 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 186/338 (55%), Positives = 258/338 (76%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 379 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 438
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 439 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 498
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGCRV
Sbjct: 499 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 558
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ 920
IQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G
Sbjct: 559 IQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 617
Query: 921 IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKV 979
++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQK+
Sbjct: 618 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 677
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 678 IDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 715
Score = 250 (93.1 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 72/265 (27%), Positives = 128/265 (48%)
Query: 764 QVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
Q+RE+A GH++ S +G R IQ +E ++ + E+ + + D GN+
Sbjct: 394 QLREIA----GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 449
Query: 824 VIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ 883
VIQK E + + V++L+ YGCRVIQ+ LE ++ Q+ M+ E+
Sbjct: 450 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ-QNEMVRELDG 508
Query: 884 SVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTP 943
V +DQ GN+VVQ +E +P II GQ+ +S + VI++ L P
Sbjct: 509 HVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 568
Query: 944 AERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALK 1003
+ ++ E+ E+ +++DQ+ NYV+Q VLE + I+ I+ ++ L
Sbjct: 569 DQTLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 622
Query: 1004 KYTYGKHIVARVEKLVAAGERRISI 1028
++ + ++V + + ER + I
Sbjct: 623 QHKFASNVVEKCVTHASRTERAVLI 647
Score = 59 (25.8 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 37/148 (25%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ LSS + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 197 NNSLSS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 255
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 256 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 310
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 311 SLSSHGSSSSLNLGGLTNGSGRYISAAP 338
Score = 53 (23.7 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 47/209 (22%), Positives = 79/209 (37%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 62 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 120
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 121 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 178
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q + S F N S F G ++ + + S S+ G+
Sbjct: 179 PQPQQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 238
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 239 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 267
Score = 47 (21.6 bits), Expect = 5.1e-106, Sum P(2) = 5.1e-106
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 35 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 88
Query: 303 DKRTVSG 309
+ +G
Sbjct: 89 GQGLAAG 95
Score = 42 (19.8 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 27 EQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEG-SLSSIDGLFKKLSDNKGGF 85
+Q+ +L ++ + S + + ++F GSA P S L L GGF
Sbjct: 182 QQQPSNNLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGF 241
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 1010 (360.6 bits), Expect = 1.5e-106, Sum P(3) = 1.5e-106
Identities = 190/341 (55%), Positives = 258/341 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGHV+EFS DQ+GSRFIQ KLE A+ E+ +VF EI+ A
Sbjct: 795 SRLLEDFRNNRYPNLQLREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAA 854
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 855 YQLMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 914
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY-DQVVTLSTHPYG 857
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV A+QFI+ F QV LSTHPYG
Sbjct: 915 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYG 974
Query: 858 CRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKL 917
CRVIQR+LEHC E+T SI+ +EI Q L QDQYGNYV+QHVLEHG+ ++S I+ ++
Sbjct: 975 CRVIQRILEHCLPEQTLSIL-EEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEI 1033
Query: 918 TGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVV 976
G ++ +SQ KFASNV+EKC++ AER L++E+ + + L MMKDQ+ANYVV
Sbjct: 1034 RGNVLGLSQHKFASNVVEKCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVV 1093
Query: 977 QKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
QK+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1094 QKMIDVAEPTQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1134
Score = 263 (97.6 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 105/412 (25%), Positives = 178/412 (43%)
Query: 625 SYPGGPLLPNSPVGSGSPVRHGD--RNMRFPS--GMRNLSGGVMGPWHS-EAGGSLDESF 679
S G L S +P+ HG + F S G + GP HS SL
Sbjct: 673 SLTGSSDLYKRTASSLTPIGHGAFYNGLSFSSSPGPVGMPLPNQGPSHSLTPPPSLSTHG 732
Query: 680 ASSLLD-EFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMP 738
+SS L+ +N + F +S G ++ + GS + + ++MP
Sbjct: 733 SSSSLNLGGLTNGSGRF-ISAAPGAEAKYRSATTGSSLFSPSSQLFPSSRLRYGMSDVMP 791
Query: 739 QALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVEL 798
S + + F N Q+RE+A GHV+ S +G R IQ +E
Sbjct: 792 SGRSRLLEDFRNNRYPNL-------QLREIA----GHVMEFSQDQHGSRFIQLKLERASP 840
Query: 799 DQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
++ + E+ + + D GN+VIQK E D + V++L+ YGC
Sbjct: 841 AERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGC 900
Query: 859 RVIQRVLEHC-HDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKL 917
RVIQ+ LE D++ + M+ E+ V +DQ GN+VVQ +E +PH II
Sbjct: 901 RVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAF 960
Query: 918 TGQ-IVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVV 976
GQ + +S + VI++ L P + +++ E+ E+ +++DQ+ NYV+
Sbjct: 961 KGQQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHTEQ------LVQDQYGNYVI 1014
Query: 977 QKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISI 1028
Q VLE + I++ I+ ++ L ++ + ++V + ER + I
Sbjct: 1015 QHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEKCVTHSLRAERAMLI 1066
Score = 136 (52.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 35/117 (29%), Positives = 64/117 (54%)
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
++++ G +++ SQ + S I+ L +PAERQ + NE+L + + +M D F N
Sbjct: 811 LREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQ------LMVDVFGN 864
Query: 974 YVVQKVLETCD-DQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIM 1029
YV+QK E DQ+L L RI+ H+ +L YG ++ + + + + ++ I+ M
Sbjct: 865 YVIQKFFEFGSLDQKLALA-ERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEM 920
Score = 47 (21.6 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 38/132 (28%), Positives = 51/132 (38%)
Query: 223 SSETQFAHLHHDLSSIDG---LGSSANKQ---GMPSAQSIGTSASHSYASALGASLSR-S 275
SS +Q + L S+ G LG +AN G ++G + A++ + R S
Sbjct: 614 SSSSQSSSLFSQGSAQPGNTSLGFNANPTSSLGATLGAALGGFGTAEVANSSSSGSRRDS 673
Query: 276 TTPDPQLMARAPSPRIPTA-GV---GRASSMDKRTVSGPLPLNGVSPSLKD--SAEIVAA 329
T L R S P G G + S V PLP G S SL S +
Sbjct: 674 LTGSSDLYKRTASSLTPIGHGAFYNGLSFSSSPGPVGMPLPNQGPSHSLTPPPSLSTHGS 733
Query: 330 LSGLNLS--TDG 339
S LNL T+G
Sbjct: 734 SSSLNLGGLTNG 745
Score = 41 (19.5 bits), Expect = 1.5e-106, Sum P(3) = 1.5e-106
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 277 TPDPQLMARAPSPRIPTAGVGRA 299
TP P +AP+P T G GR+
Sbjct: 44 TPQPGPSPQAPAP---TQGAGRS 63
Score = 37 (18.1 bits), Expect = 1.5e-106, Sum P(3) = 1.5e-106
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 629 GPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSL 683
G L +S GSGSP + F G +G +++ SL + ++L
Sbjct: 600 GALGGSSFYGSGSPSSSSQSSSLFSQGSAQPGNTSLG-FNANPTSSLGATLGAAL 653
Score = 37 (18.1 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 273 SRSTTPDPQLMARAPSPRIPTAGVGRAS 300
S S TP P L S + G+ S
Sbjct: 719 SHSLTPPPSLSTHGSSSSLNLGGLTNGS 746
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 1010 (360.6 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 186/340 (54%), Positives = 258/340 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 686 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 745
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 746 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 805
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGC
Sbjct: 806 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 865
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
RVIQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++
Sbjct: 866 RVIQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 924
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQ 977
G ++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQ
Sbjct: 925 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 984
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
K+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 985 KMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1024
Score = 268 (99.4 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 104/450 (23%), Positives = 191/450 (42%)
Query: 603 YLNKSGSLN---NNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPV----RHGDRNMRFPSG 655
Y S SL ++ Y +F G PL P S +P HG + G
Sbjct: 573 YKRTSSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGG 632
Query: 656 MRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR 715
+ N SG + + G ASS F + T F S + + + SR
Sbjct: 633 LTNGSGRYIS---AAPGAEAKYRSASSASSLFSPSST-LFSSSRLRYGMSDVMPSGR-SR 687
Query: 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775
++ + N+ +EI + D G+ IQ E T ++ + + +++
Sbjct: 688 LLE---DFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQA 744
Query: 776 VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L + ++G VIQK E L+Q+ + + + GH++ G VIQK +E +P D
Sbjct: 745 AYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSD 804
Query: 836 --AIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQY 893
I +V V+ G V+Q+ +E C ++ ++D V L+ Y
Sbjct: 805 QQVINEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPY 863
Query: 894 GNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953
G V+Q +LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+
Sbjct: 864 GCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 923
Query: 954 LGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----H--LNALKKYT 1006
G++ V+ + +FA+ VV+K + + ++++ + H L + K
Sbjct: 924 RGNV------LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQ 977
Query: 1007 YGKHIVARVEKLVAAGERRISI--MTPHPA 1034
Y ++V ++ + G+R+I + + PH A
Sbjct: 978 YANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1007
Score = 64 (27.6 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
Identities = 44/197 (22%), Positives = 77/197 (39%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 390 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 443
Query: 303 DKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDG----VADQENNSRSQNQHEIDDR 358
+ +G +P V+ + +A A GL +T+G + Q+ + Q Q +
Sbjct: 444 GQGLAAG-MP--AVAAA---AASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLA 497
Query: 359 HSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASL 415
S F N +S F G ++ + + S S+ G+ G G + N++
Sbjct: 498 SSSFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNT 557
Query: 416 MADGHKSALSSSNSYLK 432
+ + +L+ S+ K
Sbjct: 558 GSGSRRDSLTGSSDLYK 574
Score = 56 (24.8 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 36/148 (24%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ L+S + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 504 NNSLNS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 562
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 563 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 617
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 618 SLSSHGSSSSLNLGGLTNGSGRYISAAP 645
Score = 40 (19.1 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
Identities = 22/85 (25%), Positives = 32/85 (37%)
Query: 560 AAQVASLNDPAMDIG---NSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYG 616
AA AS N A + N LG Q+ P + + + SLN+N
Sbjct: 455 AAAAASANGAAGGLAGTTNGPFRPLGTQQPQPQPQQQPNNNLASSSFYGNN-SLNSNSQS 513
Query: 617 NPAFGLGMSYPGGPLLPNSPVGSGS 641
+ F G + P N+ +G GS
Sbjct: 514 SSLFSQGSAQPA-----NTSLGFGS 533
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 1011 (360.9 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 186/340 (54%), Positives = 258/340 (75%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S LL++F++N+ +L EIAGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A
Sbjct: 866 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 925
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LM DVFGNYVIQKFFE G+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQ
Sbjct: 926 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 985
Query: 801 QT--QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV ++QFI+ F QV LSTHPYGC
Sbjct: 986 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 1045
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
RVIQR+LEHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++
Sbjct: 1046 RVIQRILEHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1104
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQ 977
G ++ +SQ KFASNV+EKC++ + ER L++E+ + + L MMKDQ+ANYVVQ
Sbjct: 1105 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1164
Query: 978 KVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
K+++ + Q ++++++I+ H+ L+KYTYGKHI+A++EK
Sbjct: 1165 KMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1204
Score = 255 (94.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 95/393 (24%), Positives = 168/393 (42%)
Query: 641 SPVRHGDRN-MRFPS--GMRNLSGGVMGPWHSEAGG-SLDESFASSLLDEFKSNKTKCFE 696
+P+ H N + F S G + GP HS+ SL +SS L+
Sbjct: 761 TPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSGRY 820
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756
+S G ++ + S ++ ++MP S + + F N
Sbjct: 821 ISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNL 880
Query: 757 FEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV 816
Q+RE+A GH++ S +G R IQ +E ++ + E+ + +
Sbjct: 881 -------QLREIA----GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLM 929
Query: 817 RDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHC-HDEKTQS 875
D GN+VIQK E + + V++L+ YGCRVIQ+ LE D++ +
Sbjct: 930 VDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVIN 989
Query: 876 IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIE 935
M+ E+ V +DQ GN+VVQ +E +P II GQ+ +S + VI+
Sbjct: 990 EMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQ 1049
Query: 936 KCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRI 995
+ L P + ++ E+ E+ +++DQ+ NYV+Q VLE + I+ I
Sbjct: 1050 RILEHCLPDQTLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1103
Query: 996 KVHLNALKKYTYGKHIVARVEKLVAAGERRISI 1028
+ ++ L ++ + ++V + + ER + I
Sbjct: 1104 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLI 1136
Score = 139 (54.0 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 34/116 (29%), Positives = 62/116 (53%)
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
++++ G I++ SQ + S I+ L TPAERQ + NE+L + + +M D F N
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQ------LMVDVFGN 935
Query: 974 YVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIM 1029
YV+QK E +Q + RI+ H+ +L YG ++ + + + + ++ I+ M
Sbjct: 936 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEM 991
Score = 59 (25.8 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 37/148 (25%), Positives = 59/148 (39%)
Query: 232 HHDLSSIDGLGSSANKQG--MPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSP 289
++ LSS + SS QG P+ S+G +S S + LG++L T + S
Sbjct: 684 NNSLSS-NSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSR 742
Query: 290 RIPTAGVGRASSMDKRTVSGPLPL-NGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSR 348
R G +S + KRT S P+ + L S+ G+ L + G +
Sbjct: 743 RDSLTG---SSDLYKRTSSSLTPIGHSFYNGLSFSSS--PGPVGMPLPSQGPGHSQTPPP 797
Query: 349 SQNQHEIDDRHSLFNL-QGDSRHMKQHP 375
S + H +L L G R++ P
Sbjct: 798 SLSSHGSSSSLNLGGLTNGSGRYISAAP 825
Score = 52 (23.4 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
Identities = 47/209 (22%), Positives = 78/209 (37%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARA----PSPRIPTAGV 296
L + N+QG + + +A +S A A G L+ P L A + AG
Sbjct: 549 LTPNQNQQGQQTDPLVAAAAVNS-ALAFGQGLAAGMPGYPVLAPAAYYDQTGALVVNAGA 607
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALS------GLNLSTDG----VADQENN 346
R V+ P P+ +S S +A AA S GL +T+G + Q+
Sbjct: 608 RNGLGAPVRLVA-PAPVI-ISSSAAQAAVAAAAASANGAAGGLAGTTNGPFRPLGTQQPQ 665
Query: 347 SRSQNQHEIDDRHSLF--NLQGDSRHMKQHPFL-GRSESGHLLMHSASHSTKGSYPNMGK 403
+ Q Q S F N S F G ++ + + S S+ G+
Sbjct: 666 PQPQQQPSNSLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSAL 725
Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLK 432
G G + N++ + + +L+ S+ K
Sbjct: 726 GGFGTAVANSNTGSGSRRDSLTGSSDLYK 754
Score = 47 (21.6 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 18/67 (26%), Positives = 26/67 (38%)
Query: 243 SSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSM 302
+SAN+Q P AQ GAS R TP+ + P + A V A +
Sbjct: 522 NSANQQTTPQAQQ-----GQQQVLRGGAS-QRPLTPNQNQQGQQTDPLVAAAAVNSALAF 575
Query: 303 DKRTVSG 309
+ +G
Sbjct: 576 GQGLAAG 582
Score = 40 (19.1 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 27 EQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEG-SLSSIDGLFKKLSDNKGGF 85
+Q+ L ++ + S + + ++F GSA P S L L GGF
Sbjct: 669 QQQPSNSLASSSFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGF 728
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 910 (325.4 bits), Expect = 3.0e-96, Sum P(3) = 3.0e-96
Identities = 170/339 (50%), Positives = 242/339 (71%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S +L F +NK + FELS+I G+VV FS DQ+GSRFIQQKL TAT EE+ VFQEI +
Sbjct: 378 SRVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTS 437
Query: 741 -LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELD 799
L LM D+FGNYV+QK+FE G Q + L Q+ GHV +LSLQMYGCRV+QKAIE + +
Sbjct: 438 CLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPE 497
Query: 800 QQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859
Q Q+++ELDGH++ CV DQNGNHVIQK IEC+ +QFI+ Q+ LS HPYGCR
Sbjct: 498 HQVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCR 557
Query: 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG 919
VIQR +EHCH E+ ++++E+L + L QDQYGNYVVQH+L G ++ I +
Sbjct: 558 VIQRAIEHCHSER--KLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMID 615
Query: 920 QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEEN-EPLQVMMKDQFANYVVQK 978
++ +S KFASNV+E+C+S+ + +R+ ++N+++ EN L +MMKD++ANYV+QK
Sbjct: 616 HLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQK 675
Query: 979 VLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+L+ +++ +L+++ I H++ LKK+TYGKH++ VE+
Sbjct: 676 LLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVER 714
Score = 254 (94.5 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 75/271 (27%), Positives = 134/271 (49%)
Query: 759 HGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG-HIMRCVR 817
H + EL+D L G+V+ S +G R IQ+ + +++ + +E+ ++ +
Sbjct: 385 HANKQRHFELSDIL-GNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMM 443
Query: 818 DQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDE-KTQSI 876
D GN+V+QK E E Q ++ V +LS YGCRV+Q+ +E+ E + Q I
Sbjct: 444 DIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLI 503
Query: 877 M-MD-EILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVI 934
+D +L VC DQ GN+V+Q +E I++ L QI +S + VI
Sbjct: 504 QELDGHVLDCVC----DQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVI 559
Query: 935 EKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNR 994
++ + +ER+ ++ E+L I + + +DQ+ NYVVQ +L T + + I +
Sbjct: 560 QRAIEH-CHSERKLIIEELLPHILK------LTQDQYGNYVVQHILRTGSESDKKYIFDL 612
Query: 995 IKVHLNALKKYTYGKHIVARVEKLVAAGERR 1025
+ HL L + + ++V R ++ +RR
Sbjct: 613 MIDHLLFLSCHKFASNVVERCISYISDVDRR 643
Score = 139 (54.0 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 36/121 (29%), Positives = 66/121 (54%)
Query: 909 ERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMK 968
+R + + G +V S + S I++ L+ T ER+A+ E I LQ+MM
Sbjct: 389 QRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQE----IASTSCLQLMM- 443
Query: 969 DQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISI 1028
D F NYVVQK E +++Q +++L++IK H+ +L YG +V + + ++ E ++ +
Sbjct: 444 DIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISP-EHQVQL 502
Query: 1029 M 1029
+
Sbjct: 503 I 503
Score = 42 (19.8 bits), Expect = 3.0e-96, Sum P(3) = 3.0e-96
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 341 ADQENNSRSQNQHEIDDRHSLFNLQGDSRHMK-----QHPFLGRSES 382
A+ N + I SL NLQ DS K + PF RSES
Sbjct: 110 ANHHGNPFPNGKQSIKAMPSLVNLQEDSVISKFPNSLEVPFRKRSES 156
Score = 38 (18.4 bits), Expect = 3.0e-96, Sum P(3) = 3.0e-96
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 610 LNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGS 641
L LYG G +P P +P+G S
Sbjct: 171 LKTELYGQLNSECGARFPQTLKSPLTPIGGDS 202
Score = 38 (18.4 bits), Expect = 3.0e-93, Sum P(2) = 3.0e-93
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 251 PSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPR--IPTAGVGRAS 300
P+ IGTS S + ++ T +++A P +PT+ A+
Sbjct: 309 PTVSPIGTSFRQSLPDISAFGIPKTETNPSEVVAPGTIPISVLPTSNFSAAT 360
Score = 37 (18.1 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 308 SGPLPLNGVSPSLKDSAEIVAALS 331
+ P NG SP+LK+ + + S
Sbjct: 283 TSPAFANGNSPTLKNDSSFFGSAS 306
Score = 37 (18.1 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 21/77 (27%), Positives = 29/77 (37%)
Query: 232 HHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRI 291
H SSI L + + S S S+ S+L A S T+P A SP +
Sbjct: 239 HASHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSP---AFANGNSPTL 295
Query: 292 PTAGVGRASSMDKRTVS 308
S+ + TVS
Sbjct: 296 KNDSSFFGSASVRPTVS 312
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 866 (309.9 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 181/386 (46%), Positives = 253/386 (65%)
Query: 653 PSGMRNLSGGVMGPWHSEAGGS-LDESFASSLLDEFKSN--KTKCFE---------LSEI 700
P+GM N GGVM W + G ++ + L F N + + E L +I
Sbjct: 286 PNGMGN--GGVMNDWSQRSFGMPQQQAQQNGLPPNFSQNPPRRRGPEDPNGQTPKTLQDI 343
Query: 701 AGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHG 760
+V+EF+ DQ+GSRFIQQKLE A+ +K +F ++ A LMTDVFGNYVIQKFFE G
Sbjct: 344 KNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFFEFG 403
Query: 761 TASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQN 820
Q +L + G+V+ L+LQMYGCRVIQKA+E VE Q +++ E++G +++CV+DQN
Sbjct: 404 NNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQN 463
Query: 821 GNHVIQKCIECVPEDAIQFIVLTFY----DQVVTLSTHPYGCRVIQRVLEHCHDEKTQSI 876
GNHVIQK IE V + +QFI+ F D V TLS HPYGCRVIQRVLE+C++E+ Q +
Sbjct: 464 GNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQKQPV 523
Query: 877 MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKK-LTGQIVQMSQQKFASNVIE 935
+ D + + L DQYGNYV+QHV+EHG P ++ I++ ++ +++ +Q KFASNVIE
Sbjct: 524 L-DALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIE 582
Query: 936 KCLSFGTPAERQALVNEMLGSIEE-NEPLQVMMKDQFANYVVQKVLETCDDQQLELILNR 994
KCL+FG AER +++++ G + + PL MMKD FANYVVQK+L+ D Q + I
Sbjct: 583 KCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKKITLT 642
Query: 995 IKVHLNALKKYTYGKHIVARVEKLVA 1020
IK H+ L+KY +GKHI+ ++EK A
Sbjct: 643 IKPHIATLRKYNFGKHILLKLEKYFA 668
Score = 37 (18.1 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 593 SPQKSQYGVPYLNKSGSLNNNLYGNPA 619
SP+ +G + +NL G+P+
Sbjct: 38 SPKSESFGQSVTTAFNGMVDNLVGSPS 64
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 810 (290.2 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
Identities = 163/351 (46%), Positives = 240/351 (68%)
Query: 661 GGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQK 720
G G ++ GG + + S LL+E +SN K ++L +I GH +EF+ DQ+GSRFIQQK
Sbjct: 548 GNFKGKNNTTNGGG-NHIYRSPLLEEVRSNP-KPYQLKDIYGHAIEFTKDQHGSRFIQQK 605
Query: 721 LETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLS 780
L AT EEK +F EI + LMTDVFGNYVIQK+FE+GT +Q + L + + GH+ LS
Sbjct: 606 LPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQVLLESMIGHIHELS 665
Query: 781 LQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECV-PEDAIQF 839
LQMYGCRV+Q+A+E ++ + Q ++++EL HI+ C +DQNGNHVIQK IE + P I++
Sbjct: 666 LQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCKDQNGNHVIQKSIEKIKPFSQIRY 725
Query: 840 IVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQ 899
I+ + +Q+ LSTHPYGCRVIQR+LE+ D Q +++ ++ + L DQYGNYV+Q
Sbjct: 726 ILTSLDNQIYHLSTHPYGCRVIQRLLEYS-DIDDQKLILSQLNNFLYYLILDQYGNYVIQ 784
Query: 900 HVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNE-MLGS-- 956
H+LE+G E+ I++ + G +VQ S+ KFASNVIEKC+ FG +R+ +++E MLG+
Sbjct: 785 HILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKCIKFGDINQRKRILHEVMLGNET 844
Query: 957 -----------IEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIK 996
++E+ PL +M+KDQF NYV+QK++E D + +L++ +IK
Sbjct: 845 ILGDDDIDGEPVKEDSPLALMVKDQFGNYVIQKLVEAFDGDERKLLIIKIK 895
Score = 254 (94.5 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 68/261 (26%), Positives = 130/261 (49%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNHVI 825
+L D + GH + + +G R IQ+ + E E +++T + E+ + D GN+VI
Sbjct: 581 QLKD-IYGHAIEFTKDQHGSRFIQQKLPEATEEEKET-IFNEIWEISYELMTDVFGNYVI 638
Query: 826 QKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSV 885
QK E Q ++ + + LS YGCRV+QR LE D + Q +++E+ +
Sbjct: 639 QKYFEYGTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAI-DNEGQLRIIEELKDHI 697
Query: 886 CMLAQDQYGNYVVQHVLEHGKPHERSA-IIKKLTGQIVQMSQQKFASNVIEKCLSFGTPA 944
+ +DQ GN+V+Q +E KP + I+ L QI +S + VI++ L +
Sbjct: 698 LICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDID 757
Query: 945 ERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKK 1004
+++ +++++ N L ++ DQ+ NYV+Q +LE ++ E IL + + K
Sbjct: 758 DQKLILSQL------NNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSK 811
Query: 1005 YTYGKHIVARVEKLVAAGERR 1025
+ + +++ + K +R+
Sbjct: 812 HKFASNVIEKCIKFGDINQRK 832
Score = 45 (20.9 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
Identities = 24/84 (28%), Positives = 34/84 (40%)
Query: 378 GRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPC-- 435
G+S SG + +S ST S+ + K + NN + + + S KG
Sbjct: 496 GKSTSG---VSGSSTSTSTSHHSQSKHHHHHNNNNNNNNNNNSSGSTPGVGSKRKGNFKG 552
Query: 436 -TPTLNGGGN----SPSHHQVMGN 454
T NGGGN SP +V N
Sbjct: 553 KNNTTNGGGNHIYRSPLLEEVRSN 576
Score = 44 (20.5 bits), Expect = 5.9e-86, Sum P(3) = 5.9e-86
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 247 KQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQ 281
+Q P QS +S S + G+S S ST+ Q
Sbjct: 482 QQQQPQQQSAPSSQGKSTSGVSGSSTSTSTSHHSQ 516
Score = 43 (20.2 bits), Expect = 3.1e-83, Sum P(2) = 3.1e-83
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 436 TPTLNGGGNSPSHHQVMGNMNSAFSNFS 463
T + G GN+ HH + N N ++ S
Sbjct: 104 TAPVVGNGNNGRHHNQVTNKNFGTASIS 131
Score = 41 (19.5 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 637 VGSGSPVRHGDRNMRFPSGMRNLSGGV 663
VG+G+ RH ++ G ++SGG+
Sbjct: 108 VGNGNNGRHHNQVTNKNFGTASISGGI 134
Score = 40 (19.1 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 422 SALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSN 461
S+ S S + G T T + HH N N+ +N
Sbjct: 493 SSQGKSTSGVSGSSTSTSTSHHSQSKHHHHHNNNNNNNNN 532
Score = 38 (18.4 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 30 QQQHLQEATQVNSASAADLEKELNIFRSGS 59
QQQ Q+ +Q S ++ +K+ N S S
Sbjct: 364 QQQQQQQPSQQQQPSHSNQDKKANETNSKS 393
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 166/367 (45%), Positives = 231/367 (62%)
Query: 669 SEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEE 728
S GS ES+ L D K K FEL +I GH+VEFS DQYGSRF+QQK+ETA ++E
Sbjct: 429 SREHGSPQESWGPVLADFRLHGKNKRFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDE 488
Query: 729 KNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRV 788
K+ VF+EI+P L L D+FGNYV QK +EHG +Q + + + + V+ LSL YGCRV
Sbjct: 489 KDRVFREILPNFLQLAQDIFGNYVAQKLYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRV 548
Query: 789 IQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQV 848
+QKA+E V DQQ +V+E+ ++ CV Q+GNHVIQK E VP + +V +F QV
Sbjct: 549 VQKALEHVLTDQQAWLVREIQPQVLECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQV 608
Query: 849 VTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH 908
STH YGCRVIQR+LE C D + I+ EI L +DQYGNYV+QH+++ G+
Sbjct: 609 ERQSTHSYGCRVIQRMLEFCEDVDRRFILA-EIRACAPRLIEDQYGNYVIQHIIQSGEEE 667
Query: 909 ERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQV-MM 967
+RS +I+ + +++ S+ KFASNV+EK + FG A+RQ ++ + E +E + +M
Sbjct: 668 DRSFMIEMVKQKLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRLTAKTEGHETQLIELM 727
Query: 968 KDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIS 1027
DQ+ NYV QKVL + +++RIK L LKK GK I A +EKL+ G+ S
Sbjct: 728 ADQYGNYVFQKVLGHLSGVERAALVDRIKPLLVHLKKSNCGKQIAA-IEKLI--GD---S 781
Query: 1028 IMTPHPA 1034
+P+PA
Sbjct: 782 SPSPNPA 788
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 153/376 (40%), Positives = 238/376 (63%)
Query: 668 HSEAGGSLDESF-ASSLLDEFKS-----NKTKCFELSEIAGHVVEFSADQYGSRFIQQKL 721
HS++ +++ S LL++ ++ N L +I GH +EF DQ+GSRFIQ++L
Sbjct: 501 HSQSLQQQQQTYHRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQREL 560
Query: 722 ETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSL 781
T+ EK ++F EI A+ L DVFGNYVIQKFFE G+ Q L DQ G++ LSL
Sbjct: 561 ATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSL 620
Query: 782 QMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIV 841
QMY CRVIQKA+E ++ +Q+ ++V EL +++ ++DQNGNHVIQK IE +P + + FI+
Sbjct: 621 QMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFIL 680
Query: 842 LTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHV 901
+ + LSTH YGCRVIQR+LE E +SI+ +E+ + L QDQYGNYV+Q+V
Sbjct: 681 SSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESIL-NELKDFIPYLIQDQYGNYVIQYV 739
Query: 902 LEHGK--PHE----RSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG 955
L+ + E + II+ + +V+ S+ KFASNV+EK + +G+ ++ +++++L
Sbjct: 740 LQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILP 799
Query: 956 -------SIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKY-TY 1007
++E++ P+ +M+KDQFANYV+QK++ + + +LI+ I+ +L+ L K +
Sbjct: 800 RDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYLDKLNKSNSL 859
Query: 1008 GKHIVARVEKLVAAGE 1023
G +A VEKL A E
Sbjct: 860 GNRHLASVEKLAALVE 875
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 142/343 (41%), Positives = 218/343 (63%)
Query: 683 LLDEFKSNKT--KCFELSEIAGHVVEFSADQYGSRFIQQKLETATTE-EKNMVFQEIMPQ 739
LL +++N K +LS+I G +++F+ DQ GSRFIQQ+L ++ EK+ +F E++
Sbjct: 176 LLTRYRANPAMMKNLKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSN 235
Query: 740 ALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELD 799
A L+ D+FGNYV+QKFFE+G L D + V + QMY CRV+QKA+E +
Sbjct: 236 ADELVDDIFGNYVVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEP 295
Query: 800 QQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQ---VVTLSTHPY 856
Q +++ ++ I RC++DQNGNHV+QK IE V +QFIV T + + +S PY
Sbjct: 296 LQIKILSQIRHVIHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPY 355
Query: 857 GCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKK 916
GCRV+QR LEHC +T+ ++ +I + +A +QYGNYVVQHV+EHG +R I+ +
Sbjct: 356 GCRVVQRCLEHCSPSQTKPVI-GQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTR 414
Query: 917 LTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQV-MMKDQFANYV 975
++ + + + K++SNVIEKCL G + +V E + P+ V MMKDQ+ANYV
Sbjct: 415 VSNNLFEFATHKYSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYV 474
Query: 976 VQKVLE-TCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
VQK+ + +Q+ ELIL ++ H+ L+++ +GKHI+A++EK
Sbjct: 475 VQKMFDQVTSEQRRELILT-VRPHIPVLRQFPHGKHILAKLEK 516
Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 64/317 (20%), Positives = 135/317 (42%)
Query: 729 KNMVFQEIMPQALSLMTDVFGN-YVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCR 787
KN+ +I L D G+ ++ Q+ + + D++ + L ++G
Sbjct: 188 KNLKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNY 247
Query: 788 VIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQ 847
V+QK E E ++V + + V+QK +E + E +Q +L+
Sbjct: 248 VVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEP-LQIKILSQIRH 306
Query: 848 VV-TLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQS---VCMLAQDQYGNYVVQHVLE 903
V+ G V+Q+ +E + Q I+ D +L+S + ++ D YG VVQ LE
Sbjct: 307 VIHRCMKDQNGNHVVQKAIEKVSPQYVQFIV-DTLLESSNTIYEMSVDPYGCRVVQRCLE 365
Query: 904 HGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPL 963
H P + +I ++ + +++ ++ + V++ + G+ +R +V + ++ E
Sbjct: 366 HCSPSQTKPVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFE---- 421
Query: 964 QVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNA-------LKKYTYGKHIVARVE 1016
++++ V++K LE +I+ H + K Y ++V ++
Sbjct: 422 --FATHKYSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMF 479
Query: 1017 KLVAAGERRISIMTPHP 1033
V + +RR I+T P
Sbjct: 480 DQVTSEQRRELILTVRP 496
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 677 (243.4 bits), Expect = 5.2e-66, Sum P(2) = 5.2e-66
Identities = 181/475 (38%), Positives = 266/475 (56%)
Query: 573 IGNSYMDLLGLQKAYLGALLSPQKSQYGVP-YLNKSGSLNNNLYGNPAFGLGMSYPGGPL 631
IG S+ + LG + L+P S P L S +++++ G G+ G
Sbjct: 724 IGQSFYNSLGYSSSPSPIGLTPGHSPLTPPPSLPSSHGSSSSIH----LG-GLPNGSGRY 778
Query: 632 LPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS-LDESFASSLLDEFKSN 690
+ +P G+ ++ R+ S + + S + P + S + S S LL++F++N
Sbjct: 779 ISAAP---GAEAKY--RSSGSTSSLFSSSSQLFPPPRARYSRSDVMPSGRSRLLEDFRNN 833
Query: 691 KTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGN 750
+ +L ++ GH+VEFS DQ+GSRFIQQKLE AT+ E+ MVF EI+ A LMTDVFGN
Sbjct: 834 RFPNLQLRDLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGN 893
Query: 751 YVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQ--TQMVKEL 808
YVIQKFFE G+A Q LA ++ GHVL L+LQMYGCRVIQKA+E + DQQ + +V+EL
Sbjct: 894 YVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVREL 953
Query: 809 DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHC 868
DGH+++CV+DQNGNHV+QKCIECV A+QFI+ F QV LSTHPYGCRVIQR+LEHC
Sbjct: 954 DGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHC 1013
Query: 869 HDEKTQSIMMDEILQSVCMLAQDQYGNYVVQ-HVLEHGKPHERSAIIKKLTGQIVQMSQQ 927
E+T I+ +E+ Q L Q N VQ V G ++ + ++ Q
Sbjct: 1014 TQEQTLPIL-EELHQHSEQLGQK---NTSVQLKVTFKG--------LRICSFDLLFKDQ- 1060
Query: 928 KFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQ 987
+ + VI+ L G P ++ +V E+ G + L + +N V + V+ + ++
Sbjct: 1061 -YGNYVIQHVLEHGRPEDKSKIVAEVRGKV-----LALSQHKFASNVVEKCVIHSSRAER 1114
Query: 988 LELI----LNRIKVH--LNALKKYTYGKHIVARVEKLVAAGERRISI--MTPHPA 1034
LI + H L + K Y ++V R+ + +R+I + + PH A
Sbjct: 1115 ALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMAEPAQRKIIMHKIRPHIA 1169
Score = 459 (166.6 bits), Expect = 4.3e-39, Sum P(2) = 4.3e-39
Identities = 119/376 (31%), Positives = 197/376 (52%)
Query: 648 RNMRFPS-GMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVE 706
RN RFP+ +R+L G ++ + + GS F L+ S + + EI +
Sbjct: 831 RNNRFPNLQLRDLPGHMV-EFSQDQHGS---RFIQQKLERATSAERQMV-FGEILQAAYQ 885
Query: 707 FSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQ-- 764
D +G+ IQ+ E + ++K + I L L ++G VIQK E ++ Q
Sbjct: 886 LMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQV 945
Query: 765 VRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHV 824
+ ++ +L GHVL G V+QK IE V+ ++ G + G V
Sbjct: 946 ISDIVRELDGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRV 1005
Query: 825 IQKCIE-CVPEDAIQFIV-LTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL 882
IQ+ +E C E + + L + + + +V + L C
Sbjct: 1006 IQRILEHCTQEQTLPILEELHQHSEQLGQKNTSVQLKVTFKGLRIC-------------- 1051
Query: 883 QSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGT 942
S +L +DQYGNYV+QHVLEHG+P ++S I+ ++ G+++ +SQ KFASNV+EKC+ +
Sbjct: 1052 -SFDLLFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSS 1110
Query: 943 PAERQALVNEMLGSIE-ENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNA 1001
AER L++E+ + + L MMKDQ+ANYVVQ++++ + Q ++I+++I+ H+
Sbjct: 1111 RAERALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMAEPAQRKIIMHKIRPHIAT 1170
Query: 1002 LKKYTYGKHIVARVEK 1017
L+KYTYGKHI+A++EK
Sbjct: 1171 LRKYTYGKHILAKLEK 1186
Score = 45 (20.9 bits), Expect = 5.2e-66, Sum P(2) = 5.2e-66
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 252 SAQSIGTSASHSYASALGAS----LSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTV 307
+ Q + + YA A L+ + P+P ++ AP P G A++ T+
Sbjct: 400 TVQQLNAAQQQQYALAAAQQQHLGLAPAFVPNPYIINAAPPGADPYTAAGLAAAA---TL 456
Query: 308 SGP 310
+GP
Sbjct: 457 AGP 459
Score = 38 (18.4 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 271 SLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNG 315
SL S++P P + SP P + + G LP NG
Sbjct: 731 SLGYSSSPSPIGLTPGHSPLTPPPSLPSSHGSSSSIHLGGLP-NG 774
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 565 (203.9 bits), Expect = 4.7e-54, P = 4.7e-54
Identities = 115/219 (52%), Positives = 152/219 (69%)
Query: 701 AGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHG 760
AGH++EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A LM DVFGNYVIQKFFE G
Sbjct: 1 AGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFG 60
Query: 761 TASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQT--QMVKELDGHIMRCVRD 818
+ Q LA+++ GHVL+L+LQMYGCRVIQKA+E + DQQ +MV+ELDGH+++CV+D
Sbjct: 61 SLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 120
Query: 819 QNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMM 878
QNGNHV+QKCIECV ++QFI+ F Q YG VIQ VLEH E I+
Sbjct: 121 QNGNHVVQKCIECVQPQSLQFIIDAFKGQ------DQYGNYVIQHVLEHGRPEDKSKIVA 174
Query: 879 DEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKL 917
EI +V +L+Q ++ + VV+ + H ER+ +I ++
Sbjct: 175 -EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 305 (112.4 bits), Expect = 5.4e-26, P = 5.4e-26
Identities = 68/210 (32%), Positives = 114/210 (54%)
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV 805
D G+ IQ E T ++ + + +++ L + ++G VIQK E L+Q+ +
Sbjct: 10 DQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALA 69
Query: 806 KELDGHIMRCVRDQNGNHVIQKCIECVPED--AIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
+ + GH++ G VIQK +E +P D I +V V+ G V+Q+
Sbjct: 70 ERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQK 129
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
+E C ++ ++D QDQYGNYV+QHVLEHG+P ++S I+ ++ G ++
Sbjct: 130 CIE-CVQPQSLQFIID------AFKGQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLV 182
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEM 953
+SQ KFASNV+EKC++ + ER L++E+
Sbjct: 183 LSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 188 (71.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 55/187 (29%), Positives = 90/187 (48%)
Query: 698 SEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFF 757
+EI + D +G+ IQ+ E + E+K + + I LSL ++G VIQK
Sbjct: 34 NEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKAL 93
Query: 758 EHGTASQ--VRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRC 815
E + Q + E+ +L GHVL G V+QK IE V+ ++ G
Sbjct: 94 EFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKG----- 148
Query: 816 VRDQNGNHVIQKCIECV-PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQ 874
+DQ GN+VIQ +E PED + IV V+ LS H + V+++ + H +
Sbjct: 149 -QDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHA-SRTER 205
Query: 875 SIMMDEI 881
++++DE+
Sbjct: 206 AVLIDEV 212
Score = 163 (62.4 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 54/222 (24%), Positives = 100/222 (45%)
Query: 810 GHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH 869
GHIM +DQ+G+ IQ +E Q + L +G VIQ+ E
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 870 DEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAI---IKKLTGQIVQMSQ 926
E+ ++ + I V LA YG V+Q LE P ++ I +++L G +++ +
Sbjct: 62 LEQKLALA-ERIRGHVLSLALQMYGCRVIQKALEF-IPSDQQVINEMVRELDGHVLKCVK 119
Query: 927 QKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQ 986
+ ++V++KC+ P Q +++ G +DQ+ NYV+Q VLE +
Sbjct: 120 DQNGNHVVQKCIECVQPQSLQFIIDAFKG------------QDQYGNYVIQHVLEHGRPE 167
Query: 987 QLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISI 1028
I+ I+ ++ L ++ + ++V + + ER + I
Sbjct: 168 DKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLI 209
Score = 150 (57.9 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 43/173 (24%), Positives = 83/173 (47%)
Query: 686 EFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEK--NMVFQEIMPQALSL 743
EF S + K I GHV+ + YG R IQ+ LE ++++ N + +E+ L
Sbjct: 58 EFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKC 117
Query: 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
+ D GN+V+QK E ++ + D G YG VIQ +E + +++
Sbjct: 118 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQ------DQYGNYVIQHVLEHGRPEDKSK 171
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPY 856
+V E+ G+++ + + ++V++KC+ ++ D+V T++ P+
Sbjct: 172 IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLI----DEVCTMNDGPH 220
Score = 132 (51.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQK 978
G I++ SQ + S I+ L TPAERQ + NE+L + + +M D F NYV+QK
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQ------LMVDVFGNYVIQK 55
Query: 979 VLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIM 1029
E +Q + RI+ H+ +L YG ++ + + + + ++ I+ M
Sbjct: 56 FFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEM 106
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 513 (185.6 bits), Expect = 6.5e-53, Sum P(2) = 6.5e-53
Identities = 106/316 (33%), Positives = 181/316 (57%)
Query: 703 HVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTA 762
+++ F DQ+G R++Q+ LE + VF E P LM D FGNY+ QK FEH +
Sbjct: 347 NILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASE 406
Query: 763 SQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVEL-DQQTQMVKELDGHIMRCVRDQNG 821
+Q + ++ +S M+G R +QK I++V DQ + +V L +++ +D NG
Sbjct: 407 AQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNG 466
Query: 822 NHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEI 881
NHVIQKC+ ++ QFI + + +STH +GC V+QR +H + + ++ + I
Sbjct: 467 NHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLV-EHI 525
Query: 882 LQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFG 941
+ L QD +GNYV+Q+VLE P+ AII ++ +S QKF+SNV+EKC+ F
Sbjct: 526 VPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFA 585
Query: 942 TPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNA 1001
A ++ L++E++ + + L +++D FANYV+Q L+ +Q ++ RIK + +
Sbjct: 586 PAAIKEKLISELM----DEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPS 641
Query: 1002 LKKYTYGKHIVARVEK 1017
+K G+ I++++E+
Sbjct: 642 IKNTPCGRRILSKLER 657
Score = 229 (85.7 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 73/314 (23%), Positives = 146/314 (46%)
Query: 632 LPNSPVGSGSPVRHGDRNMRFPSGMRNLS--GGVMGPWHSEAGGSLDESFASSL---LDE 686
L NS + S +HG R ++ +N S V H + ++F + L L E
Sbjct: 343 LQNSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFE 402
Query: 687 FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEK-NMVFQEIMPQALSLMT 745
S + + IA +V S + +G+R +Q+ ++ ++ ++ + + + P + L
Sbjct: 403 HASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTK 462
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV 805
D+ GN+VIQK + + + D + L +S +GC V+Q+ + Q Q+V
Sbjct: 463 DLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLV 522
Query: 806 KELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVL 865
+ + H + V+D GN+V+Q +E + + I+ F +V LST + V+++ +
Sbjct: 523 EHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCI 582
Query: 866 EHCH---DEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIV 922
EK S +MDE + + L +D + NYV+Q L++ +R+ +++++ I
Sbjct: 583 FFAPAAIKEKLISELMDE--KHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIP 640
Query: 923 QMSQQKFASNVIEK 936
+ ++ K
Sbjct: 641 SIKNTPCGRRILSK 654
Score = 158 (60.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 44/185 (23%), Positives = 84/185 (45%)
Query: 688 KSNKTKC-FELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTD 746
K ++ C F I ++ S ++G +Q+ + A+ + + + I+P AL+L+ D
Sbjct: 476 KFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQD 535
Query: 747 VFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVK 806
FGNYV+Q E + + V LS Q + V++K I + +++
Sbjct: 536 AFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLIS 595
Query: 807 EL--DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRV 864
EL + H+ + +RD N+VIQ ++ +V + ++ P G R++ +
Sbjct: 596 ELMDEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRILSK- 654
Query: 865 LEHCH 869
LE H
Sbjct: 655 LERRH 659
Score = 144 (55.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 51/259 (19%), Positives = 115/259 (44%)
Query: 698 SEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFF 757
+E ++ D +G+ Q+ E A+ +++ Q I P+ + + ++ G +QK
Sbjct: 378 AETHPYLAVLMVDAFGNYLCQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKII 437
Query: 758 EH-GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV 816
+ + Q+ + + L +V+ L+ + G VIQK + + + + +
Sbjct: 438 DLVSSPDQISCIVNALRPNVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVS 497
Query: 817 RDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSI 876
++G V+Q+C + I+ +V +TL +G V+Q VLE + T++I
Sbjct: 498 THRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAI 557
Query: 877 MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQ--IVQMSQQKFASNVI 934
+ L V L+ ++ + V++ + + +I +L + + ++ + FA+ VI
Sbjct: 558 I-SYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFANYVI 616
Query: 935 EKCLSFGTPAERQALVNEM 953
+ L + +R LV +
Sbjct: 617 QTALDNASVKQRAELVERI 635
Score = 135 (52.6 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 42/211 (19%), Positives = 97/211 (45%)
Query: 809 DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHC 868
+ +I+ +DQ+G +Q+ +E + I + + + L +G + Q++ EH
Sbjct: 345 NSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHA 404
Query: 869 HDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEH-GKPHERSAIIKKLTGQIVQMSQQ 927
E +S + I + ++ + +G +Q +++ P + S I+ L +V +++
Sbjct: 405 -SEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKD 463
Query: 928 KFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQ 987
++VI+KCL+ + + Q + + + +PL V + VVQ+ + Q
Sbjct: 464 LNGNHVIQKCLNKFSQEDCQFIFDAIC-----EDPLDVSTH-RHGCCVVQRCFDHASPAQ 517
Query: 988 LELILNRIKVHLNALKKYTYGKHIVARVEKL 1018
+E ++ I H L + +G +++ V +L
Sbjct: 518 IEQLVEHIVPHALTLVQDAFGNYVLQYVLEL 548
Score = 68 (29.0 bits), Expect = 6.5e-53, Sum P(2) = 6.5e-53
Identities = 61/236 (25%), Positives = 98/236 (41%)
Query: 241 LGSSANKQGMPSAQS-IGTSASHSYASALGASLS----RSTTPDPQLMARAPSPRIPTAG 295
+G N PS+ + SAS+ +++ +S S +T D ++ R P T G
Sbjct: 130 MGGGLNNLSSPSSSLYLPGSASYQRSNSKNSSASILQMNTTLDDIPILLRRPGLSSYTPG 189
Query: 296 VGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEI 355
S +R++S L G +P L A +A T G + N++ S +
Sbjct: 190 ----PSTSRRSISSSSNLGG-NPGL--IANNPSASKNFAF-TSGSSSTNNSTTSSS---- 237
Query: 356 DDRHSLFN-LQGDSRHMKQHPFLGRSES--GHLLMHSASHSTKGSYPNMGKSGVGIDMNN 412
S+ N LQ S+H P L + S G L S + ST S + SG I N
Sbjct: 238 ----SMANGLQSISKHSAAFPLLSNATSFFGENLTPSLAAST-ASTGSTDSSGSNI-AN- 290
Query: 413 ASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPS----HHQVMGNMNSAFSNFSL 464
+L+A + S+N+ G +P G N PS V +++S+ ++ SL
Sbjct: 291 -TLIAPTPTISPPSANTV--GNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSL 343
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 516 (186.7 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 112/336 (33%), Positives = 191/336 (56%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
S+ L F ++ + + +EI G DQ+G R++Q+KLE ++ M+F E
Sbjct: 223 SAQLSRFNNHPIEYYR-NEIYG----LCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHV 277
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
+ LMTD FGNY+ QK E+ Q L ++ ++ ++L +G R +QK IE + ++
Sbjct: 278 IELMTDPFGNYLCQKLLEYSNDEQRTVLVNKAAPQLVKIALNQHGTRALQKMIEFISTEE 337
Query: 801 QTQMVKE-LDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859
QTQ V + L H++ V+D NGNHVIQKC+ + + QFI Q VT+ TH +GC
Sbjct: 338 QTQTVIDALKDHVVELVQDLNGNHVIQKCLNRLTAEKSQFIYDAVGAQCVTVGTHRHGCC 397
Query: 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG 919
V+QR ++H + ++ ++++I ++ L QD +GNYVVQ++L+ + + ++
Sbjct: 398 VLQRCIDHASGAQ-RARLIEQITENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFLS 456
Query: 920 QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKV 979
+I ++S+ KF+SNVIEKCL R+ ++ EML E L+ M++D +ANYVVQ
Sbjct: 457 RIPKLSKHKFSSNVIEKCLRTADEEMRRQMIEEMLAGDE----LEKMLRDSYANYVVQTA 512
Query: 980 LETCDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015
++ D I+ I+ L +L+ +G+ I +++
Sbjct: 513 MDYADPATRARIVKYIEPILPSLRGTPHGRRIGSKI 548
Score = 40 (19.1 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 367 DSRHMKQHPFLGRSESGHLLMHSASHSTKGSY 398
D H P + R + H L +A +ST+G++
Sbjct: 19 DESHSAS-PNVARHAARHSLESNALYSTEGNH 49
Score = 40 (19.1 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 264 YASALGASLS-RSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNG 315
+ LGA+ S T P P L A P P G+ + V+ PLP+NG
Sbjct: 142 FGPQLGAATSGNGTMPQPSL-AGFPQPFF--YGI-------QPFVAPPLPVNG 184
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 515 (186.3 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 113/334 (33%), Positives = 192/334 (57%)
Query: 689 SNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVF 748
+NKT + ++ G + DQ+G RF+Q+KLE + + ++F+E+ L LMTD F
Sbjct: 702 ANKTYT-SIDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPF 760
Query: 749 GNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKE- 807
GNY+ QK EH Q + +++ ++ +S+ M+G R +QK IE + +Q Q++K
Sbjct: 761 GNYLCQKLLEHCNDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRS 820
Query: 808 LDGHIMRCVRDQNGNHVIQKCIECV-PEDAIQFI--VLTFYDQVVTLSTHPYGCRVIQRV 864
L ++ ++D NGNHVIQKC+ + P+D QFI ++ + ++TH +GC V+QR
Sbjct: 821 LKDSVVPLIQDLNGNHVIQKCLNKLSPQDN-QFIYDAVSSDGSCIAVATHRHGCCVLQRC 879
Query: 865 LEHCHD-EKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
++H + +K Q ++ E++ + +L QD YGNYVVQ+VL+ + + K+ G +
Sbjct: 880 IDHASESQKLQ--LIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPI 937
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETC 983
++ QKF+SNV+EKCL R L+ E++ + + L +++D +ANYV+Q L
Sbjct: 938 LATQKFSSNVVEKCLHVADAITRGYLIQEVI----DYDNLLHLLQDPYANYVIQTSLTIS 993
Query: 984 DDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ Q ++ I+ HL LK YGK I ++ K
Sbjct: 994 EPHQHTKLVEAIRPHLPLLKNTPYGKRIQNKIIK 1027
Score = 248 (92.4 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 56/250 (22%), Positives = 126/250 (50%)
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEK-NMVFQEIMPQALSLMTDVFGNYVIQK 755
+ ++ +V S + +G+R +Q+ +E TT E+ ++ + + + L+ D+ GN+VIQK
Sbjct: 781 IEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPLIQDLNGNHVIQK 840
Query: 756 FFEHGTASQVRELADQLT--GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIM 813
+ + + D ++ G + ++ +GC V+Q+ I+ Q+ Q+++E+ + +
Sbjct: 841 CLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIANSL 900
Query: 814 RCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKT 873
V+D GN+V+Q ++ + + F V L+T + V+++ L H D T
Sbjct: 901 VLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFSSNVVEKCL-HVADAIT 959
Query: 874 QSIMMDEILQ--SVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFAS 931
+ ++ E++ ++ L QD Y NYV+Q L +PH+ + +++ + + + +
Sbjct: 960 RGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISEPHQHTKLVEAIRPHLPLLKNTPYGK 1019
Query: 932 NVIEKCLSFG 941
+ K + G
Sbjct: 1020 RIQNKIIKEG 1029
Score = 185 (70.2 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 58/236 (24%), Positives = 117/236 (49%)
Query: 789 IQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQV 848
I K I+++ T + ++ G I RDQ+G +QK +E + I D +
Sbjct: 694 ISKKIDLIANKTYTS-IDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYM 752
Query: 849 VTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH 908
+ L T P+G + Q++LEHC+D + +I+ +++ + ++ + +G VQ ++E+
Sbjct: 753 LELMTDPFGNYLCQKLLEHCNDRQRLTII-EKVGTDIVRISMNMHGTRAVQKMIEYLTTP 811
Query: 909 ERSAIIKK-LTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMM 967
E+ +IK+ L +V + Q ++VI+KCL+ +P + Q + + ++ + +
Sbjct: 812 EQIQLIKRSLKDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYD----AVSSDGSCIAVA 867
Query: 968 KDQFANYVVQKVLE-TCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAG 1022
+ V+Q+ ++ + Q+L+LI I L L + YG ++V V L G
Sbjct: 868 THRHGCCVLQRCIDHASESQKLQLIQEVIANSL-VLVQDPYGNYVVQYVLDLPFQG 922
Score = 169 (64.5 bits), Expect = 7.7e-09, Sum P(4) = 7.7e-09
Identities = 39/171 (22%), Positives = 84/171 (49%)
Query: 702 GHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGT 761
G + + ++G +Q+ ++ A+ +K + QE++ +L L+ D +GNYV+Q +
Sbjct: 861 GSCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPF 920
Query: 762 ASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKE-LD-GHIMRCVRDQ 819
E+A + GHV L+ Q + V++K + V + + +++E +D +++ ++D
Sbjct: 921 QGLATEMAKRFVGHVPILATQKFSSNVVEKCLHVADAITRGYLIQEVIDYDNLLHLLQDP 980
Query: 820 NGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHD 870
N+VIQ + +V + L PYG R+ ++++ D
Sbjct: 981 YANYVIQTSLTISEPHQHTKLVEAIRPHLPLLKNTPYGKRIQNKIIKEGRD 1031
Score = 55 (24.4 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 411 NNASLMADGHKSALSSSNSYLKGPC-TPT---LNGGGNSPSHH 449
NN++ +G+ ++ SS+N+ P TPT +G SPS H
Sbjct: 438 NNSNNNGNGNSNSNSSNNNNTVHPARTPTPPQSSGNSTSPSQH 480
Score = 48 (22.0 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 26 REQKQQQHLQEATQVNSAS 44
++Q+QQQ+LQ+ Q N+++
Sbjct: 237 QQQQQQQYLQQQQQFNNSN 255
Score = 46 (21.3 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 17/131 (12%), Positives = 54/131 (41%)
Query: 317 SPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPF 376
S +++ + V+ ++ N + + + NN+ + N H + ++ ++ + +
Sbjct: 505 SEKVEEKQQNVSPITSTNNNNNNSSSSNNNTNTNNNHNNSNNNNNNSVNNSNSNSNSSNN 564
Query: 377 LGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCT 436
+ + + ++ S++ + N + + NN + + + + +S+N+
Sbjct: 565 NNNNNNNNNNNNNNSNNNNSNNSNSNNNNKQNNRNNNNNNNNSNNNNNNSNNNSTNS--N 622
Query: 437 PTLNGGGNSPS 447
T N N+ S
Sbjct: 623 NTQNNNNNTQS 633
Score = 43 (20.2 bits), Expect = 3.5e-46, Sum P(4) = 3.5e-46
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 388 HSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPS 447
+S ++S S + + + NN + ++ + S S+SN+ K N NS +
Sbjct: 550 NSVNNSNSNSNSSNNNNNNNNNNNNNNNNSNNNNSNNSNSNNNNKQNNRNNNNNNNNSNN 609
Query: 448 HHQVMGNMNSAFSN 461
++ N NS SN
Sbjct: 610 NNNNSNN-NSTNSN 622
Score = 42 (19.8 bits), Expect = 8.4e-47, Sum P(4) = 8.4e-47
Identities = 7/14 (50%), Positives = 13/14 (92%)
Query: 23 KLIREQKQQQHLQE 36
+L+++Q+QQQ LQ+
Sbjct: 203 QLLQQQQQQQQLQQ 216
Score = 40 (19.1 bits), Expect = 2.0e-47, Sum P(4) = 2.0e-47
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 312 PLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFN 363
P+ V +L S + S N + +G NN+ + N + ++ ++ N
Sbjct: 386 PIAKVGNNLLHSPIDLNQFSNFNGNMNGTTSNNNNNNNNNNNNNNNNNNNSN 437
Score = 40 (19.1 bits), Expect = 1.4e-46, Sum P(4) = 1.4e-46
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 3 PDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQE 36
P + I+ S Y +P+ D R Q++ ++
Sbjct: 72 PPLEIQQSFYNAPEPESDFSGTSRNAFFQEYFKQ 105
Score = 40 (19.1 bits), Expect = 9.6e-46, Sum P(3) = 9.6e-46
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 408 IDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSP--SHHQVMGNMNSAFSN 461
ID+N S S++N+ N NS S++ GN NS SN
Sbjct: 399 IDLNQFSNFNGNMNGTTSNNNNNNNNNNNNNNNNNNNSNNNSNNNGNGNSNSNSSN 454
Score = 40 (19.1 bits), Expect = 9.6e-46, Sum P(3) = 9.6e-46
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 605 NKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSG---SPVRHGDRNMRFPSGMRNLSG 661
N S + NN P G+S G + P + VG+ SP+ D N +F + N++G
Sbjct: 358 NNSNNNNNKQPPQPPQSNGVSGNGAIVRPIAKVGNNLLHSPI---DLN-QFSNFNGNMNG 413
Score = 39 (18.8 bits), Expect = 9.1e-46, Sum P(4) = 9.1e-46
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 393 STKGSYPNMGKSGVGIDMNNASLMADGHKS-ALSSSNSYLKGPCTPTLNGGGNSPSHHQV 451
ST + N S + NN ++ + + ++++SNS N N+ +++
Sbjct: 520 STNNNNNNSSSSNNNTNTNNNHNNSNNNNNNSVNNSNSN-SNSSNNNNNNNNNNNNNNNN 578
Query: 452 MGNMNSAFSN 461
N NS SN
Sbjct: 579 SNNNNSNNSN 588
Score = 38 (18.4 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 602 PYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVR 644
P L S ++N+N N + P P N G+G+ VR
Sbjct: 344 PQLRNS-NINSNNNNNNSNNNNNKQPPQPPQSNGVSGNGAIVR 385
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 462 (167.7 bits), Expect = 4.6e-46, Sum P(2) = 4.6e-46
Identities = 107/345 (31%), Positives = 190/345 (55%)
Query: 677 ESFASSLLDE--FKSNKTKCF-ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVF 733
+S +L D SN + ++SE G+V + DQ+G RF+Q E + + ++F
Sbjct: 173 KSGVGALFDHQGISSNPNESLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIF 232
Query: 734 QEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT---GHVLTLSLQMYGCRVIQ 790
E++P + LM D FGNY++QK + Q ++ +T G ++ +SL YG RV+Q
Sbjct: 233 SEVIPHVVELMMDPFGNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQ 292
Query: 791 KAIEVVELDQQTQMVKE-LDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVV 849
+ +E ++ +Q +VK L + +RD NGNHVIQ+C++C+ + +FI +
Sbjct: 293 RLVESIKTRKQISLVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCI 352
Query: 850 TLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE 909
++TH +GC V+Q+ + + + + ++ EI ++ LAQD YGNY VQ VLE
Sbjct: 353 DIATHRHGCCVLQKCIAYSSGLQREKLVT-EISRNSLFLAQDPYGNYAVQFVLELRDFSA 411
Query: 910 RSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKD 969
+A++ +L G V++S QKF+S+++E+CL+ P R +V E++ S+ ++++D
Sbjct: 412 IAAMLAQLKGHYVELSMQKFSSHMVERCLTH-CPESRPQIVRELI-SVPH---FDILIQD 466
Query: 970 QFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVAR 1014
+AN+V+Q L ++ I+ H + L+ Y K I +R
Sbjct: 467 PYANFVIQAALAVTKGSLHATLVEVIRPH-SILRNNPYCKRIFSR 510
Score = 56 (24.8 bits), Expect = 4.6e-46, Sum P(2) = 4.6e-46
Identities = 29/129 (22%), Positives = 49/129 (37%)
Query: 297 GRASSMDKRTVSGPLPLNGVSPSLK---DSAEIVAALSGLNLSTDGVADQENNSRSQNQH 353
G SS D + PL+G+ D + + LN+ + + S +
Sbjct: 68 GLCSSEDGSSQFASPPLDGLMTKYNFGGDDLGLCESFDLLNVGEEDKTHHQTQRSSFGNY 127
Query: 354 EIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNA 413
E + G K H S S +L M S + + S P GKSGVG ++
Sbjct: 128 EANGDGGFRYYSGFGVDQKDHQI---SNSWNLGMQSCNMNNY-SVPVHGKSGVGALFDHQ 183
Query: 414 SLMADGHKS 422
+ ++ ++S
Sbjct: 184 GISSNPNES 192
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 477 (173.0 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 99/337 (29%), Positives = 188/337 (55%)
Query: 685 DEFKSNKTKC--FELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALS 742
DE K N+ ++S++ + + G +I +KL+ EEK ++ ++ +S
Sbjct: 178 DEEKHNEEGQVHIDMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMS 237
Query: 743 LMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQT 802
L D++G+YV Q F+ D+ H L+L YGCR+IQK++E + + +
Sbjct: 238 LCPDIYGSYVAQSIFDLKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKC 297
Query: 803 QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQ 862
++ KEL +++ + QNGNHVIQKC+E +P I I+ + + LS+H YGCR++Q
Sbjct: 298 KIFKELQEDLIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQ 357
Query: 863 RVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIV 922
R+ E ++++ + ++I++ + ++ +++YGNYV+Q EH + R I ++ I
Sbjct: 358 RIYEIGNEQQINRLN-EQIIKKIHLI-KNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIY 415
Query: 923 QMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQV-MMKDQFANYVVQKVLE 981
++S K+A N+IEK L ++ ++ +++ I + + + + KD + N+++QK+L
Sbjct: 416 KLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLT 475
Query: 982 TCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKL 1018
TC ++ I+ I +L+ LK TYGK+I+ + L
Sbjct: 476 TCRKKERNFIIKTIIENLDKLKDETYGKYILRAINNL 512
Score = 287 (106.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 78/331 (23%), Positives = 161/331 (48%)
Query: 696 ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQK 755
++S++ + + G +I +KL+ EEK ++ ++ +SL D++G+YV Q
Sbjct: 191 DMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQS 250
Query: 756 FFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRC 815
F+ D+ H L+L YGCR+IQK++E + + + ++ KEL +++
Sbjct: 251 IFDLKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKY 310
Query: 816 VRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQS 875
+ QNGNHVIQKC+E +P I I+ + + LS+H YGCR++QR+ E ++++
Sbjct: 311 ICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINR 370
Query: 876 IMMDEILQSV--------------CMLAQDQYGNYVVQHVLEHG----KPHERSA-IIKK 916
+ ++I++ + C D +++ + + H+ + II+K
Sbjct: 371 LN-EQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEK 429
Query: 917 LTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVN---EMLGSIEENEPLQVMMKDQFAN 973
I+ + K+ +I+K ++ + + ++N + G+ + L K + N
Sbjct: 430 ----ILLKKEYKYKKKIIKKIVNDISDG-KDNIINICKDCYGNFMMQKLLTTCRKKE-RN 483
Query: 974 YVVQKVLETCDDQQLELILNRIKVHLNALKK 1004
++++ ++E D + E I +N L+K
Sbjct: 484 FIIKTIIENLDKLKDETYGKYILRAINNLEK 514
Score = 277 (102.6 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 71/262 (27%), Positives = 135/262 (51%)
Query: 680 ASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQ 739
A S+ D K K K E H + YG R IQ+ LE+ + E K +F+E+
Sbjct: 248 AQSIFD-LKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQED 306
Query: 740 ALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELD 799
+ + GN+VIQK E S + + + + ++ LS YGCR++Q+ E+ +
Sbjct: 307 LIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGN-E 365
Query: 800 QQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLT-FYDQVVTLSTHPYGC 858
QQ + E + ++++ GN+VIQKC E +D I+FI+ + + LS+H Y C
Sbjct: 366 QQINRLNEQIIKKIHLIKNRYGNYVIQKCFEH-SDDNIRFIITDEIVNDIYKLSSHKYAC 424
Query: 859 RVIQRVL---EHCHDEKTQSIMMDEILQ---SVCMLAQDQYGNYVVQHVLEHGKPHERSA 912
+I+++L E+ + +K ++++I ++ + +D YGN+++Q +L + ER+
Sbjct: 425 NIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNF 484
Query: 913 IIKKLTGQIVQMSQQKFASNVI 934
IIK + + ++ + + ++
Sbjct: 485 IIKTIIENLDKLKDETYGKYIL 506
Score = 159 (61.0 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 73/317 (23%), Positives = 134/317 (42%)
Query: 730 NMVFQEIMPQALSL-MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRV 788
N + E +P+ + + D+F N +K E G QV ++ + L GC
Sbjct: 156 NKRYYENLPEQVIINKKDMFKNDE-EKHNEEG---QVHIDMSKVMYDIYFLCFHKNGCEY 211
Query: 789 IQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQV 848
I K ++ +++ ++ L M D G++V Q + E + F
Sbjct: 212 IIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKYKERFTDEFLKHT 271
Query: 849 VTLSTHPYGCRVIQRVLEHCHDEKTQSI---MMDEILQSVCMLAQDQYGNYVVQHVLEHG 905
L+ H YGCR+IQ+ LE DE I + +++++ +C Q GN+V+Q +E
Sbjct: 272 SFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYIC----HQNGNHVIQKCVEVL 327
Query: 906 KPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQV 965
II + + +S + ++++ G + L +++ I
Sbjct: 328 PCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKIH------- 380
Query: 966 MMKDQFANYVVQKVLETCDDQQLELILNRI-----KV--HLNA--------LKK-YTYGK 1009
++K+++ NYV+QK E DD +I + I K+ H A LKK Y Y K
Sbjct: 381 LIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKK 440
Query: 1010 HIVARVEKLVAAGERRI 1026
I+ ++ ++ G+ I
Sbjct: 441 KIIKKIVNDISDGKDNI 457
Score = 37 (18.1 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 334 NLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMK 372
+++ GV + NN + N +D+ FN + +H+K
Sbjct: 22 DINNIGVINNTNNINNVND-VVDE----FNFKDQLKHLK 55
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 477 (173.0 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 99/337 (29%), Positives = 188/337 (55%)
Query: 685 DEFKSNKTKC--FELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALS 742
DE K N+ ++S++ + + G +I +KL+ EEK ++ ++ +S
Sbjct: 178 DEEKHNEEGQVHIDMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMS 237
Query: 743 LMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQT 802
L D++G+YV Q F+ D+ H L+L YGCR+IQK++E + + +
Sbjct: 238 LCPDIYGSYVAQSIFDLKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKC 297
Query: 803 QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQ 862
++ KEL +++ + QNGNHVIQKC+E +P I I+ + + LS+H YGCR++Q
Sbjct: 298 KIFKELQEDLIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQ 357
Query: 863 RVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIV 922
R+ E ++++ + ++I++ + ++ +++YGNYV+Q EH + R I ++ I
Sbjct: 358 RIYEIGNEQQINRLN-EQIIKKIHLI-KNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIY 415
Query: 923 QMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQV-MMKDQFANYVVQKVLE 981
++S K+A N+IEK L ++ ++ +++ I + + + + KD + N+++QK+L
Sbjct: 416 KLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLT 475
Query: 982 TCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKL 1018
TC ++ I+ I +L+ LK TYGK+I+ + L
Sbjct: 476 TCRKKERNFIIKTIIENLDKLKDETYGKYILRAINNL 512
Score = 287 (106.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 78/331 (23%), Positives = 161/331 (48%)
Query: 696 ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQK 755
++S++ + + G +I +KL+ EEK ++ ++ +SL D++G+YV Q
Sbjct: 191 DMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQS 250
Query: 756 FFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRC 815
F+ D+ H L+L YGCR+IQK++E + + + ++ KEL +++
Sbjct: 251 IFDLKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKY 310
Query: 816 VRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQS 875
+ QNGNHVIQKC+E +P I I+ + + LS+H YGCR++QR+ E ++++
Sbjct: 311 ICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINR 370
Query: 876 IMMDEILQSV--------------CMLAQDQYGNYVVQHVLEHG----KPHERSA-IIKK 916
+ ++I++ + C D +++ + + H+ + II+K
Sbjct: 371 LN-EQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEK 429
Query: 917 LTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVN---EMLGSIEENEPLQVMMKDQFAN 973
I+ + K+ +I+K ++ + + ++N + G+ + L K + N
Sbjct: 430 ----ILLKKEYKYKKKIIKKIVNDISDG-KDNIINICKDCYGNFMMQKLLTTCRKKE-RN 483
Query: 974 YVVQKVLETCDDQQLELILNRIKVHLNALKK 1004
++++ ++E D + E I +N L+K
Sbjct: 484 FIIKTIIENLDKLKDETYGKYILRAINNLEK 514
Score = 277 (102.6 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 71/262 (27%), Positives = 135/262 (51%)
Query: 680 ASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQ 739
A S+ D K K K E H + YG R IQ+ LE+ + E K +F+E+
Sbjct: 248 AQSIFD-LKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQED 306
Query: 740 ALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELD 799
+ + GN+VIQK E S + + + + ++ LS YGCR++Q+ E+ +
Sbjct: 307 LIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGN-E 365
Query: 800 QQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLT-FYDQVVTLSTHPYGC 858
QQ + E + ++++ GN+VIQKC E +D I+FI+ + + LS+H Y C
Sbjct: 366 QQINRLNEQIIKKIHLIKNRYGNYVIQKCFEH-SDDNIRFIITDEIVNDIYKLSSHKYAC 424
Query: 859 RVIQRVL---EHCHDEKTQSIMMDEILQ---SVCMLAQDQYGNYVVQHVLEHGKPHERSA 912
+I+++L E+ + +K ++++I ++ + +D YGN+++Q +L + ER+
Sbjct: 425 NIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNF 484
Query: 913 IIKKLTGQIVQMSQQKFASNVI 934
IIK + + ++ + + ++
Sbjct: 485 IIKTIIENLDKLKDETYGKYIL 506
Score = 159 (61.0 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 73/317 (23%), Positives = 134/317 (42%)
Query: 730 NMVFQEIMPQALSL-MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRV 788
N + E +P+ + + D+F N +K E G QV ++ + L GC
Sbjct: 156 NKRYYENLPEQVIINKKDMFKNDE-EKHNEEG---QVHIDMSKVMYDIYFLCFHKNGCEY 211
Query: 789 IQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQV 848
I K ++ +++ ++ L M D G++V Q + E + F
Sbjct: 212 IIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKYKERFTDEFLKHT 271
Query: 849 VTLSTHPYGCRVIQRVLEHCHDEKTQSI---MMDEILQSVCMLAQDQYGNYVVQHVLEHG 905
L+ H YGCR+IQ+ LE DE I + +++++ +C Q GN+V+Q +E
Sbjct: 272 SFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYIC----HQNGNHVIQKCVEVL 327
Query: 906 KPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQV 965
II + + +S + ++++ G + L +++ I
Sbjct: 328 PCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKIH------- 380
Query: 966 MMKDQFANYVVQKVLETCDDQQLELILNRI-----KV--HLNA--------LKK-YTYGK 1009
++K+++ NYV+QK E DD +I + I K+ H A LKK Y Y K
Sbjct: 381 LIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKK 440
Query: 1010 HIVARVEKLVAAGERRI 1026
I+ ++ ++ G+ I
Sbjct: 441 KIIKKIVNDISDGKDNI 457
Score = 37 (18.1 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 334 NLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMK 372
+++ GV + NN + N +D+ FN + +H+K
Sbjct: 22 DINNIGVINNTNNINNVND-VVDE----FNFKDQLKHLK 55
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 483 (175.1 bits), Expect = 4.9e-43, Sum P(2) = 4.9e-43
Identities = 143/500 (28%), Positives = 243/500 (48%)
Query: 524 ELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNE-YAAAQVASLNDPAMDIGNSYMDLLG 582
E ++ +H S + +P P LQ L S + ++ V S A+ N +
Sbjct: 294 ETDQLSHFPDHLDPSRIPSPYQ-PSSLQPLESRKLHSKVDVHSKKLNALSQLNPILRSEN 352
Query: 583 -LQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYG-NPAFGLGMSYPGGPLLPNSPVGSG 640
LQ + LS V N+ NN G +P GP P G
Sbjct: 353 VLQNDNHHSSLSMDNDPTNVSTKNR----NNQTVGEHPYVDDNKKKKKGPAKPKEKATLG 408
Query: 641 SPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFK--SNKTKCFELS 698
V N F G + S P ++ G + ++ L ++ K S + L
Sbjct: 409 KTV-----NSFF--GSHSTSNYSKVPLSAKLTGEKSDDLSNLLKNKGKKKSQDNQIPHLV 461
Query: 699 EIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFE 758
GH+ DQYG R++Q+ L+ ++ F EI + LM D FGNY+ QK F
Sbjct: 462 GFLGHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFV 521
Query: 759 HGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV-KELDGHIMRCVR 817
+ + Q + + + ++ + +YG R +Q I+ + ++Q ++ K + +
Sbjct: 522 YASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLAC 581
Query: 818 DQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877
D NG HV+QKCI P + ++ + L+ + ++TL+T+ +GC ++QR L+ + + Q +
Sbjct: 582 DNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGD-IQERL 640
Query: 878 MDEILQSVCMLAQDQYGNYVVQHVLEHG-KPH-ERSAIIKKLTGQIVQMSQQKFASNVIE 935
++ I++S +L Q+ YGNY+VQHVLE +P+ ER II+K G I ++S QKF+SN IE
Sbjct: 641 VNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTER--IIEKFFGNICKLSLQKFSSNAIE 698
Query: 936 KCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRI 995
+C+ +P+ R+ ++ E L S E L + D +ANYV+Q+ L D+ Q LIL I
Sbjct: 699 QCIRTASPSTREQMLQEFL-SFPNIEQL---LDDCYANYVMQRFLNVADESQKFLILRSI 754
Query: 996 KVHLNALKKYTYGKHIVARV 1015
+ ++ +G+HI+A++
Sbjct: 755 SHVIPKIQNTRHGRHILAKL 774
Score = 214 (80.4 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 54/256 (21%), Positives = 124/256 (48%)
Query: 687 FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEK-NMVFQEIMPQALSLMT 745
+ S + K L+ I +V+ ++ YG+R +Q ++ T+ E+ +++ + I+P +L
Sbjct: 522 YASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLAC 581
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV 805
D G +V+QK ++ L + +++TL+ +GC ++Q+ ++ D Q ++V
Sbjct: 582 DNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLV 641
Query: 806 KELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVL 865
+ + V++ GN+++Q +E + + I+ F+ + LS + I++ +
Sbjct: 642 NSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCI 701
Query: 866 EHCHDEKTQSIMMDEILQ--SVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923
T+ M+ E L ++ L D Y NYV+Q L ++ I++ ++ I +
Sbjct: 702 RTA-SPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPK 760
Query: 924 MSQQKFASNVIEKCLS 939
+ + +++ K S
Sbjct: 761 IQNTRHGRHILAKLTS 776
Score = 137 (53.3 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 46/210 (21%), Positives = 100/210 (47%)
Query: 810 GHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH 869
GH+ +DQ G +QK ++ P+ VV L P+G + Q++ +
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 870 DEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHER-SAIIKKLTGQIVQMSQQK 928
E+ S M++ I + + + + YG +Q++++ +E+ S ++K + + ++
Sbjct: 525 REQKLS-MLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDN 583
Query: 929 FASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQL 988
++V++KC++ P + + L L S+EEN L + ++ ++Q+ L+ +
Sbjct: 584 NGTHVLQKCIAKFPPEKLEPL---FL-SMEEN--LITLATNRHGCCILQRCLDRTNGDIQ 637
Query: 989 ELILNRIKVHLNALKKYTYGKHIVARVEKL 1018
E ++N I L + YG ++V V +L
Sbjct: 638 ERLVNSIIKSCLLLVQNAYGNYLVQHVLEL 667
Score = 47 (21.6 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 22/94 (23%), Positives = 38/94 (40%)
Query: 348 RSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVG 407
RS+N + D+ HS ++ D ++ ++ H + KG K+ +G
Sbjct: 349 RSENVLQNDNHHSSLSMDNDPTNVSTKNRNNQTVGEHPYVDDNKKKKKGPAKPKEKATLG 408
Query: 408 IDMNNASLMADGHKSALSSSNSYLKGPCTPTLNG 441
+N+ H S+SN Y K P + L G
Sbjct: 409 KTVNS---FFGSH----STSN-YSKVPLSAKLTG 434
Score = 45 (20.9 bits), Expect = 4.9e-43, Sum P(2) = 4.9e-43
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 336 STDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHM--KQ----HPFLGRSESGHLLMHS 389
S + D+E+ S I+DR L L+ R++ +Q HPF ++ L +S
Sbjct: 209 SFSSLIDEESKLASLRNLNINDRPPLPVLKNSERNLLHRQLLSNHPFFSQNNVS-LSTNS 267
Query: 390 ASHST 394
++ST
Sbjct: 268 KNYST 272
Score = 37 (18.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 30/103 (29%), Positives = 42/103 (40%)
Query: 334 NLSTDGVADQENNSRSQNQ---HEID-DRHSLFNLQGDSRHMKQHPFLGRS----ESGHL 385
N STD Q ++S QN+ H I+ D+ S F D + P+ S ES L
Sbjct: 269 NYSTDFTKIQSDSSLLQNRQQNHRIETDQLSHFPDHLDPSRIPS-PYQPSSLQPLESRKL 327
Query: 386 LMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSN 428
HS K + + + + N L D H S+LS N
Sbjct: 328 HSKVDVHSKKLNA--LSQLNPILRSENV-LQNDNHHSSLSMDN 367
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 445 (161.7 bits), Expect = 4.9e-41, P = 4.9e-41
Identities = 101/345 (29%), Positives = 184/345 (53%)
Query: 675 LDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQ 734
L+E SL + K ++E G + + DQ+G RF+Q+ + M+F
Sbjct: 254 LNEDLTMSL-NNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFN 312
Query: 735 EIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT---GHVLTLSLQMYGCRVIQK 791
EI+ LM D FGNY++QK E Q ++ +T G ++ +S M+G R +QK
Sbjct: 313 EIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQK 372
Query: 792 AIEVVELDQQTQMVKELDGH-IMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVT 850
+E + +++ ++ H I+ +++ NGNHV+Q+C++ + +F+ V
Sbjct: 373 IVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVE 432
Query: 851 LSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHER 910
L+T +GC V+Q+ L + E+ Q ++ EI + +L+QD +GNYV+Q+V E
Sbjct: 433 LATDRHGCCVLQKCLGYSEGEQKQHLV-SEIASNALLLSQDPFGNYVLQYVFELQLQWAT 491
Query: 911 SAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEML--GSIEENEPLQVMMK 968
I+++L G ++S QK +SNV+EKCL R ++ E++ G ++ QVM+
Sbjct: 492 FEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLD-----QVML- 545
Query: 969 DQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVA 1013
D + NYV+Q L+ L+++ IK+++++L+ YGK +++
Sbjct: 546 DPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVLS 590
Score = 211 (79.3 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 63/259 (24%), Positives = 123/259 (47%)
Query: 774 GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVP 833
G + L+ +GCR +Q+ + + + E+ +I + D GN+++QK +E
Sbjct: 280 GKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCN 339
Query: 834 EDAIQFIVLTFYDQ---VVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQ 890
ED IV + + ++ +S +G R +Q+++E E+ SI++ + + L +
Sbjct: 340 EDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIK 399
Query: 891 DQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALV 950
+ GN+VVQ L++ P+ + + V+++ + V++KCL + ++Q LV
Sbjct: 400 NVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLV 459
Query: 951 NEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKH 1010
+E I N L + +D F NYV+Q V E IL +++ + L +
Sbjct: 460 SE----IASNALL--LSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSN 513
Query: 1011 IVARVEKLVAAGERRISIM 1029
+V + KL A + R I+
Sbjct: 514 VVEKCLKL-ADDKHRARII 531
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 462 (167.7 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 121/443 (27%), Positives = 216/443 (48%)
Query: 590 ALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSP--VGSGSPVRHGD 647
+L SP K P L + + NNN Y N P L +S + +G P G
Sbjct: 351 SLKSPNK-----PNLASNNNNNNNNYSNSNISFSNIKPNNGSLSSSANSISTGLPNLSGG 405
Query: 648 R-NMRFPSGMRNLSGGVMGPWHSEAGGS-------------LDESFASSLLDEFKSNKTK 693
+ N S + N+ G+ G + S + +S + S + + K
Sbjct: 406 KINTNVYSSLGNIGSGMNGSSTKDDSVSPTKKSTDHQPRKPMTKSVSMSSIG-LNNQDPK 464
Query: 694 CFELSEIAGHVVEFSADQYGSRFIQQKLETAT-TEEKNMVFQEIMPQALSLMTDVFGNYV 752
C L EI G + + Q G RF+Q+KLE +E ++F E+ LM D +G Y+
Sbjct: 465 CTSLEEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYL 524
Query: 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHI 812
I + ++ +Q R++ D++ V T + +YG IQK ++ + DQ ++ + G +
Sbjct: 525 IPQLMKYCDNNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKGKV 584
Query: 813 MRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEK 872
++ +D GN++IQ ++ + QF+ + + TH GC V+ R +++ + E+
Sbjct: 585 IQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQ 644
Query: 873 TQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASN 932
+ ++ D+I + L QDQ+GNYVVQH+L K + S +I L I ++S QKF+SN
Sbjct: 645 LEKLV-DKITEHSLKLVQDQFGNYVVQHLLSKNKAYS-SKLIVSLKDNIAELSIQKFSSN 702
Query: 933 VIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELIL 992
VIEKCL + ++ ++ E + L +++D++AN+V+Q L+ +D Q ++
Sbjct: 703 VIEKCLQLADTPTYELIIK----ALTEADILS-LLQDKYANFVIQTALDVSNDTQHAKLV 757
Query: 993 NRIKVHLNALKKYTYGKHIVARV 1015
I +++ +K Y HI ++
Sbjct: 758 KIIVPYIHQIKT-PYVIHIQKKI 779
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 450 (163.5 bits), Expect = 5.7e-40, P = 5.7e-40
Identities = 100/322 (31%), Positives = 182/322 (56%)
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756
+ +I G+V + DQ+G RF+Q+ + T+ + ++F E++ + LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKL 390
Query: 757 FEHGTASQVREL---ADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVK-ELDGHI 812
+ T Q ++ A + G ++ +SL YG RV+Q+ +E + +Q +VK L
Sbjct: 391 LDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGF 450
Query: 813 MRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEK 872
+ ++D NGNHVIQ+C++C+ + +FI ++TH +GC V+Q+ + + ++
Sbjct: 451 LDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQ 510
Query: 873 TQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASN 932
+ ++ EI ++ +LAQD +GNY VQ V+E P + ++ +L G VQ+S QKF+S+
Sbjct: 511 REKLIA-EISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSH 569
Query: 933 VIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELIL 992
++E+CL P R +V E++ S+ + L ++D +AN+V+Q L ++
Sbjct: 570 MVERCLMH-CPESRPQIVRELV-SVPHFDQL---LQDPYANFVIQAALAATKGPLHASLV 624
Query: 993 NRIKVHLNALKKYTYGKHIVAR 1014
I+ H + L+ Y K I +R
Sbjct: 625 EVIRPH-SILRNNPYCKRIFSR 645
Score = 220 (82.5 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 56/244 (22%), Positives = 119/244 (48%)
Query: 698 SEIAGHVVEFSADQYGSRFIQQKLETATTEEK-NMVFQEIMPQALSLMTDVFGNYVIQKF 756
+E G ++ S + YG+R +Q+ +ET + ++ ++V + P L L+ D+ GN+VIQ+
Sbjct: 407 TEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRC 466
Query: 757 FEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV 816
+ + + + D T ++ +GC V+QK I Q+ +++ E+ + +
Sbjct: 467 LQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLA 526
Query: 817 RDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSI 876
+D GN+ +Q IE A+ ++ V LS + +++R L HC + + Q +
Sbjct: 527 QDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIV 586
Query: 877 MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMS----QQKFASN 932
+ L QD Y N+V+Q L K +++++ + + + ++ F+ N
Sbjct: 587 RELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPHSILRNNPYCKRIFSRN 646
Query: 933 VIEK 936
+++K
Sbjct: 647 LLKK 650
Score = 132 (51.5 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 45/212 (21%), Positives = 88/212 (41%)
Query: 683 LLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALS 742
L++ +S K + ++ D G+ IQ+ L+ +TE+ +F
Sbjct: 429 LVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTE 488
Query: 743 LMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQT 802
+ T G V+QK + Q +L +++ + L L+ +G +Q IE+
Sbjct: 489 IATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVA 548
Query: 803 QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFI-VLTFYDQVVTLSTHPYGCRVI 861
M+ +L GH ++ + +H++++C+ PE Q + L L PY VI
Sbjct: 549 MMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLLQDPYANFVI 608
Query: 862 QRVLEHCHDEKTQSIMMDEILQSVCMLAQDQY 893
Q L S++ E+++ +L + Y
Sbjct: 609 QAALAATKGPLHASLV--EVIRPHSILRNNPY 638
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 443 (161.0 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 107/325 (32%), Positives = 176/325 (54%)
Query: 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756
L + G + DQ+G RF+Q++L+ ++ + +F+E + LMTD FGNY+IQK
Sbjct: 561 LDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKL 620
Query: 757 FEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKE-LDGHIMRC 815
E T Q L + H + +SL +G R +QK IE ++ D++ Q+V + L + ++
Sbjct: 621 LEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQL 680
Query: 816 VRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQS 875
+D NGNHVIQKC++ + + QFI D + ++TH +GC V+QR L+H E+ +
Sbjct: 681 SKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDN 740
Query: 876 IMMDEILQSVCMLAQDQYGNYVVQHVL----EHGKPHERSAIIKKLTGQIVQMSQQKFAS 931
+ D++L V L D +GNYVVQ+++ E K I+ L + +++S KF S
Sbjct: 741 LC-DKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGS 799
Query: 932 NVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELI 991
NVIEK L T + ++ E+L + E +Q ++ D + NYV+Q L+ Q L
Sbjct: 800 NVIEKILK--TAIVSEPMILEILNNGGETG-IQSLLNDSYGNYVLQTALDISHKQNDYLY 856
Query: 992 --LNRIKVHL--NALKKYTYGKHIV 1012
L+ I L ++ +GK I+
Sbjct: 857 KRLSEIVAPLLVGPIRNTPHGKRII 881
Score = 249 (92.7 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 63/263 (23%), Positives = 130/263 (49%)
Query: 770 DQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCI 829
DQ G + +L +GCR +QK ++++ + +E + + + D GN++IQK +
Sbjct: 562 DQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLL 621
Query: 830 ECVPEDAIQFIVLTFYDQ--VVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCM 887
E V + Q IVLT V +S +P+G R +Q+++E ++ I++D +
Sbjct: 622 EEVTTE--QRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQ 679
Query: 888 LAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQ 947
L++D GN+V+Q L+ KP I ++ + ++ + V+++CL GT +
Sbjct: 680 LSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCD 739
Query: 948 ALVNEMLGSIEENEPLQVMMKDQFANYVVQKVL-ETCDDQQLEL---ILNRIKVHLNALK 1003
L +++L +++ + D F NYVVQ ++ + + + + I++ +K L
Sbjct: 740 NLCDKLLALVDK------LTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELS 793
Query: 1004 KYTYGKHIVARVEKLVAAGERRI 1026
+ +G +++ ++ K E I
Sbjct: 794 IHKFGSNVIEKILKTAIVSEPMI 816
Score = 137 (53.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 49/196 (25%), Positives = 88/196 (44%)
Query: 683 LLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALS 742
L++ K+++ + + + V+ S D G+ IQ+ L+ E +F I +
Sbjct: 656 LIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCID 715
Query: 743 LMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQ----KAIEVVEL 798
+ T G V+Q+ +HGT Q L D+L V L+L +G V+Q K E +
Sbjct: 716 IATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKY 775
Query: 799 DQQTQMVKELDGHIMRCVRDQNGNHVIQKCIEC--VPEDAIQFIVLTFYDQ-VVTLSTHP 855
D ++V L + + G++VI+K ++ V E I I+ + + +L
Sbjct: 776 DYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAIVSEPMILEILNNGGETGIQSLLNDS 835
Query: 856 YGCRVIQRVLEHCHDE 871
YG V+Q L+ H +
Sbjct: 836 YGNYVLQTALDISHKQ 851
Score = 54 (24.1 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 623 GMSYP-GGPLLPNSPVGSGSP 642
G +YP GGPLL +P+ G P
Sbjct: 305 GAAYPYGGPLLQPNPIMPGHP 325
Score = 49 (22.3 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 563 VASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGN 617
++S ND +IGNS + ++ +G + + + S +G Y N + + NNN N
Sbjct: 482 MSSHNDND-NIGNSNYNNKDTGRSNVGKMKNMKNSYHG--YYNNNNNNNNNNNNN 533
Score = 40 (19.1 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 587 YLGALLSPQKSQYGVPYLNK 606
Y+G++ S K Q+G +L K
Sbjct: 564 YIGSIHSLCKDQHGCRFLQK 583
Score = 37 (18.1 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 17 YVEDLGKLIREQKQQQHLQEATQVNSASAAD 47
Y+ + L ++Q + LQ+ + + AAD
Sbjct: 564 YIGSIHSLCKDQHGCRFLQKQLDILGSKAAD 594
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 410 (149.4 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 105/353 (29%), Positives = 187/353 (52%)
Query: 666 PWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETAT 725
P S GGS + ++ + K + + + G V + DQ G R +Q+ ++
Sbjct: 209 PPFSAMGGSRELDGSAKCMKN-KEDSLDLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGN 267
Query: 726 TEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT---GHVLTLSLQ 782
+ ++F+E++ + L TD FGNY+IQK E Q ++ +LT G ++ +S+
Sbjct: 268 FVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISIN 327
Query: 783 MYGCRVIQKAIEVVELDQQTQMVKE-LDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIV 841
YG RV+QK IE V +Q +VK L + R+ NGNHVI C++ + +FI+
Sbjct: 328 NYGTRVVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFIL 387
Query: 842 LTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHV 901
+ ++T +GC V+QR + + E+ + ++ DEI ++ +LAQD +GNY+VQ++
Sbjct: 388 EAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLV-DEISRNSLLLAQDPFGNYLVQYI 446
Query: 902 LEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENE 961
+E K ++ +L G V+++ QKF S+V+EKCL + P R +VNE++ +
Sbjct: 447 IE--KKVGGVNVLFELRGNYVKLATQKFGSHVVEKCLRY-YPESRSQIVNELVSVLN--- 500
Query: 962 PLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVAR 1014
+++D +ANYV+Q L ++ +++ + N LK Y K I ++
Sbjct: 501 -FGYLLQDPYANYVIQCALSKTKGFVRASLVEKVRRYEN-LKMTPYCKRIFSK 551
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 406 (148.0 bits), Expect = 7.8e-37, P = 7.8e-37
Identities = 83/208 (39%), Positives = 126/208 (60%)
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV 805
D G+ IQ E T ++ + + +++ L + ++G VIQK E L+Q+ +
Sbjct: 6 DQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALA 65
Query: 806 KELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVL 865
+ + GH++ G VIQK +E +P D QV LSTHPYGCRVIQR+L
Sbjct: 66 ERIRGHVLSLALQMYGCRVIQKALEFIPSD----------QQVFALSTHPYGCRVIQRIL 115
Query: 866 EHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMS 925
EHC ++T I+ +E+ Q L QDQYGNYV+QHVLEHG+P ++S I+ ++ G ++ +S
Sbjct: 116 EHCLPDQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 174
Query: 926 QQKFASNVIEKCLSFGTPAERQALVNEM 953
Q KFASNV+EKC++ + ER L++E+
Sbjct: 175 QHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 404 (147.3 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 96/213 (45%), Positives = 128/213 (60%)
Query: 706 EFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQV 765
EFS DQ+GSRFIQ KLE AT E+ +VF EI+ A LM DVFGNYVIQKFFE G+ Q
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQK 61
Query: 766 RELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVI 825
LA+++ GHVL+L+LQMYGCRVIQKA+E + DQQ V L H C VI
Sbjct: 62 LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ---VFALSTHPYGC-------RVI 111
Query: 826 QKCIE-CVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQS 884
Q+ +E C+P+ + I+ + L YG VIQ VLEH E I+ EI +
Sbjct: 112 QRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA-EIRGN 169
Query: 885 VCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKL 917
V +L+Q ++ + VV+ + H ER+ +I ++
Sbjct: 170 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 205 (77.2 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 58/185 (31%), Positives = 92/185 (49%)
Query: 698 SEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFF 757
+EI + D +G+ IQ+ E + E+K + + I LSL ++G VIQK
Sbjct: 30 NEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKAL 89
Query: 758 EHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVR 817
E + Q V LS YGCRVIQ+ +E DQ +++EL H + V+
Sbjct: 90 EFIPSDQ----------QVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 139
Query: 818 DQNGNHVIQKCIECV-PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSI 876
DQ GN+VIQ +E PED + IV V+ LS H + V+++ + H +++
Sbjct: 140 DQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLVLSQHKFASNVVEKCVTHA-SRTERAV 197
Query: 877 MMDEI 881
++DE+
Sbjct: 198 LIDEV 202
Score = 176 (67.0 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 57/216 (26%), Positives = 102/216 (47%)
Query: 780 SLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQF 839
S +G R IQ +E ++ + E+ + + D GN+VIQK E +
Sbjct: 4 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 840 IVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQ 899
+ V++L+ YGCRVIQ+ LE I D Q V L+ YG V+Q
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALEF--------IPSD---QQVFALSTHPYGCRVIQ 112
Query: 900 HVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEE 959
+LEH P + I+++L Q+ Q ++ + VI+ L G P ++ +V E+ G++
Sbjct: 113 RILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV-- 170
Query: 960 NEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRI 995
V+ + +FA+ VV+K + + ++++ +
Sbjct: 171 ----LVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 154 (59.3 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 47/171 (27%), Positives = 83/171 (48%)
Query: 686 EFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMT 745
EF S + K I GHV+ + YG R IQ+ LE ++++ VF ALS T
Sbjct: 54 EFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VF------ALS--T 103
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV 805
+G VIQ+ EH Q + ++L H L YG VIQ +E + ++++V
Sbjct: 104 HPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 163
Query: 806 KELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPY 856
E+ G+++ + + ++V++KC+ ++ D+V T++ P+
Sbjct: 164 AEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLI----DEVCTMNDGPH 210
Score = 127 (49.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 33/111 (29%), Positives = 57/111 (51%)
Query: 923 QMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLET 982
+ SQ + S I+ L TPAERQ + NE+L + + +M D F NYV+QK E
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQ------LMVDVFGNYVIQKFFEF 55
Query: 983 CDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIMTPHP 1033
+Q + RI+ H+ +L YG ++ + + + + ++ ++ T HP
Sbjct: 56 GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVFALST-HP 105
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 406 (148.0 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 98/335 (29%), Positives = 180/335 (53%)
Query: 689 SNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVF 748
S + ++ + I ++ S DQ S F+QQKL+ ++ + K + I+ Q LM + F
Sbjct: 352 SERNAVYDWNVIIDKII-VSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRF 410
Query: 749 GNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKEL 808
GN+++Q+ FEHGTA Q+R++ + G++L L+ +GC V+QKAI+ V D + M+ EL
Sbjct: 411 GNFLVQRCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDEL 470
Query: 809 DGHIMRCVRDQNGNHVIQKCIEC----VPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRV 864
I + HV QK E P + + + + ++ G V+Q +
Sbjct: 471 FLTIDVTIMHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNM 530
Query: 865 LEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQM 924
E+C EK + ++EI+ + +A+ Q+GN+VVQH++E+G+ + +I L + V+
Sbjct: 531 FENCV-EKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEF 589
Query: 925 SQQKFASNVIEKCLSFGTPAERQALVNEMLGS-IEEN-EPLQVMMKDQFANYVVQKVLET 982
S +FAS VIEK + G + ++ + ++ +PL + DQ+ NY++Q++++
Sbjct: 590 SIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQL 649
Query: 983 CDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
+ L++ IK H+ +L+ YG+ + VEK
Sbjct: 650 GQPAEKNLVITHIKKHMVSLRGSKYGQKVAYLVEK 684
Score = 186 (70.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 53/266 (19%), Positives = 126/266 (47%)
Query: 698 SEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFF 757
S + G++++ + D +G +Q+ ++ T + K + E+ + + +V QK F
Sbjct: 432 SAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLF 491
Query: 758 E----HGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIE-VVELDQQTQMVKELDGHI 812
E + + + + L G +++ G V+Q E VE D++ + ++E+ H+
Sbjct: 492 ETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKR-ECIEEIIFHL 550
Query: 813 MRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEH----- 867
R Q GN V+Q +E + ++ ++ ++ V S + +VI++ ++
Sbjct: 551 DGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNF 610
Query: 868 --CHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMS 925
+ ++ + +D Q + +A DQYGNY++Q +++ G+P E++ +I + +V +
Sbjct: 611 ISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLR 670
Query: 926 QQKFASNVIEKCLSFGTPAERQALVN 951
K+ V + + + +++N
Sbjct: 671 GSKYGQKVAYLVEKWNSQKQVSSVIN 696
Score = 44 (20.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 244 SANKQGMPSAQSIGTSASHSYASALGASLSRST------TPDPQLMARAPSPRIPTA 294
S N G S+ +S S SY+ + ++ S + +P ++ + S R P A
Sbjct: 290 STNTSGTLKPYSLSSSRSSSYSKGVNSAASLQSIWETMNNSNPSVIPESTSSREPAA 346
Score = 42 (19.8 bits), Expect = 7.8e-34, Sum P(3) = 7.8e-34
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 410 MNNASLMADGHKSALSSSNSYLKGPCT 436
++NA++M+DG A S ++++ P T
Sbjct: 82 LSNANIMSDG---ASSQNDAFAHNPST 105
Score = 41 (19.5 bits), Expect = 9.9e-34, Sum P(3) = 9.9e-34
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 321 KDSAEIVAALSGLNLSTDGVADQENNSRSQN 351
K E+ LS N+ +DG + Q N++ + N
Sbjct: 73 KHIEELQTLLSNANIMSDGASSQ-NDAFAHN 102
Score = 40 (19.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 36/157 (22%), Positives = 59/157 (37%)
Query: 265 ASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDK--RTVSGPLPLNGVSPSLKD 322
AS S + S T P ++ + S + GV A+S+ T++ P V P
Sbjct: 284 ASTNNLSTNTSGTLKPYSLSSSRSSSY-SKGVNSAASLQSIWETMNNSNP--SVIPESTS 340
Query: 323 SAEIVA---------ALSGLNLSTDGVA---DQENNSRSQNQHEIDDRHSLFNLQGDSRH 370
S E A A+ N+ D + DQ+++ Q + +I N+ DS
Sbjct: 341 SREPAARYRKISERNAVYDWNVIIDKIIVSNDQQSSIFLQQKLKISSYDMKQNIV-DSII 399
Query: 371 MKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVG 407
+ HP + L+ H T MG + +G
Sbjct: 400 SQIHPLMLNRFGNFLVQRCFEHGTAPQIRQMGSAMLG 436
Score = 37 (18.1 bits), Expect = 7.8e-34, Sum P(3) = 7.8e-34
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 596 KSQYGVPYLNKSGS---LNNNLYGNPAFGLGMS 625
K+ G L+ S S LN+N G+P F +S
Sbjct: 177 KNVTGENILSASSSEENLNSNRNGDPKFRFSVS 209
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 394 (143.8 bits), Expect = 7.0e-34, P = 7.0e-34
Identities = 94/319 (29%), Positives = 170/319 (53%)
Query: 707 FSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVR 766
F DQ S +QQ+L+ E+ + I+P +++LM + FGN++IQK FE+ T +Q++
Sbjct: 263 FQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQ 322
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+ L HV LS+ +G V+QK++E+ +++EL + + ++ HV Q
Sbjct: 323 SFSYFLKKHVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQ 382
Query: 827 KCIECVPEDAIQFIVLTFYDQV----VTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL 882
K E + + I F ++ + +S G V+Q + E+C EK + +DEI+
Sbjct: 383 KFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCK-EKDKRTCLDEII 441
Query: 883 QSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGT 942
++ + Q+GN+V+QH++EHG ++ I+ L ++ S ++AS V+E+ L
Sbjct: 442 NNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCH 501
Query: 943 PAERQALVNEMLGSIEENE-P---LQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVH 998
V E+ + +NE P LQ + +Q+ NY+VQ +L+ Q+ L+ +K H
Sbjct: 502 VTFFDRYVKEI--TTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKH 559
Query: 999 LNALKKYTYGKHIVARVEK 1017
+ +L+ + YG+ I A VEK
Sbjct: 560 MVSLRGHKYGQRIAALVEK 578
Score = 217 (81.4 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 71/252 (28%), Positives = 123/252 (48%)
Query: 703 HVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTA 762
HV E S D +GS +Q+ LE N + +E++ + + +V QKFFE
Sbjct: 331 HVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRK 390
Query: 763 SQVRELAD----QLTGHVLTLSLQMYGCRVIQKAIE-VVELDQQTQMVKELDGHIMRCVR 817
S V + D ++ G L +S+ G V+Q E E D++T + E+ ++ + +
Sbjct: 391 SLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRT-CLDEIINNMDQIIC 449
Query: 818 DQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH----DEKT 873
Q GN VIQ IE E Q I+ + +V + ST+ Y +V++R L CH D
Sbjct: 450 GQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYV 509
Query: 874 QSIMMDEI-LQSVCM--LAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFA 930
+ I + L ++ + +A +QYGNY+VQ++L+ P + + + + L +V + K+
Sbjct: 510 KEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYG 569
Query: 931 SNV---IEKCLS 939
+ +EK S
Sbjct: 570 QRIAALVEKSKS 581
Score = 147 (56.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 38/170 (22%), Positives = 75/170 (44%)
Query: 699 EIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFE 758
++ G ++ S + GS +Q E ++K EI+ ++ +GN+VIQ E
Sbjct: 403 KMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINNMDQIICGQWGNWVIQHIIE 462
Query: 759 HGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG-------- 810
HG+ + + + L V + S Y +V+++A+ V + + VKE+
Sbjct: 463 HGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNELPTI 522
Query: 811 HIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
+ +Q GN+++Q ++ I + +V+L H YG R+
Sbjct: 523 FLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYGQRI 572
Score = 132 (51.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 62/289 (21%), Positives = 126/289 (43%)
Query: 676 DESFASSLLDEFKSN--KTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVF 733
D++ + SL + K+ + ++ I V +++G+ IQ+ E +T +
Sbjct: 266 DQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFS 325
Query: 734 QEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI 793
+ L D FG++V+QK E L ++L + +Q + C V QK
Sbjct: 326 YFLKKHVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFF 385
Query: 794 EVVELDQQTQMV----KELDGHIMRCVRDQNGNHVIQKCIE-CVPEDAIQFI--VLTFYD 846
E + K++ G ++ + G+ V+Q E C +D + ++ D
Sbjct: 386 ETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINNMD 445
Query: 847 QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLE--H 904
Q++ +G VIQ ++EH + Q I+ + +L+ V + ++Y + VV+ L H
Sbjct: 446 QIIC---GQWGNWVIQHIIEHGSEPDKQRIL-NSLLKEVESYSTNRYASKVVERALRVCH 501
Query: 905 GKPHERSAIIKKLT---GQIVQMSQQKFASN-----VIEKCLSFGTPAE 945
+R +K++T ++ + Q+ ASN +++ L TP++
Sbjct: 502 VTFFDR--YVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQ 548
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 379 (138.5 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 104/369 (28%), Positives = 184/369 (49%)
Query: 663 VMGPWHSEAGGSLDESFASS--LLDEF-------KSNKTKCFELSEIAGHVVEFSADQYG 713
++ P+H + G L S+ L+ + KSN + EI G V + DQ G
Sbjct: 205 LLSPFHEKVSGKLGASYLEDTVLIGQGSYGKMSPKSNND-LVSMVEIYGSVNLMAKDQIG 263
Query: 714 SRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT 773
R +Q+ +E T E ++ I+ + L D FGNY++QK F+ Q + LT
Sbjct: 264 CRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFDVSDEEQRTLIVSVLT 323
Query: 774 GH---VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKE-LDGHIMRCVRDQNGNHVIQKCI 829
+ ++ + L YG RV+QK IE V+ QQ +VK L + V+D NGNHVIQ C+
Sbjct: 324 SNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLNGNHVIQSCL 383
Query: 830 ECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLA 889
+ + + +F++ ++ H +GC V+Q + + + + ++ EI ++ L+
Sbjct: 384 QTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVA-EISRNSLHLS 442
Query: 890 QDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQAL 949
QD +GNYVVQ++++ + ++ + +++ QKF+S+VIEKCL P R +
Sbjct: 443 QDPFGNYVVQYLIDQQVSAVK--LLVQFRMHYAELATQKFSSHVIEKCLR-KYPESRAEI 499
Query: 950 VNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRI----KVHLNALKKY 1005
V E+L N + +++D +ANYV+Q L ++ ++ K+H + K
Sbjct: 500 VRELL--CVPN--FEYLLQDPYANYVIQTALSVTKGPVRAKLVAKVYRYGKLHSSPYCKK 555
Query: 1006 TYGKHIVAR 1014
+ K I+ +
Sbjct: 556 IFSKTILKK 564
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 371 (135.7 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 110/346 (31%), Positives = 173/346 (50%)
Query: 677 ESFASSLLDEFKSNKTKCFELS---EIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVF 733
E +S DE K N +L EI G V + DQ G R +Q+ +E T + ++F
Sbjct: 188 EGSGASYPDEPKINGGLPLDLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIF 247
Query: 734 QEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTG---HVLTLSLQMYGCRVIQ 790
EI+ + L D GNY++QK Q + LT ++ + L G RVIQ
Sbjct: 248 LEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQ 307
Query: 791 KAIEVVELDQQTQMVKE-LDGHIMRCVRDQNGNHVIQKCIE-CVPEDAIQFIVLTFYDQV 848
K I+ V+ QQ +VK L+ + V D NG HV+Q C+E VP D +F+V +
Sbjct: 308 KMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDN-KFVVEAATEYC 366
Query: 849 VTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH 908
L+TH YGC V+Q L + + + ++ EI + L+QD +GNYVVQ +++ +
Sbjct: 367 AQLATHQYGCYVLQCSLINTVGLQHERLVA-EISRDSLRLSQDPFGNYVVQCLIDQ-QVS 424
Query: 909 ERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMK 968
+ ++ T ++++ QKF+S+VIEKCL P R +V E+L S E L ++
Sbjct: 425 SVNLLLPFRT-HCIELATQKFSSHVIEKCLR-KYPESRAEIVRELL-SYPNFEQL---LQ 478
Query: 969 DQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVAR 1014
D +ANYV+Q L ++ ++K L+ Y K I ++
Sbjct: 479 DPYANYVIQTALSVTKGAVRARLVEKVK-RFGKLQSNPYCKKIFSK 523
Score = 37 (18.1 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 295 GVGRASSMDKRTVSGPLPLNGVS 317
G G AS D+ ++G LPL+ VS
Sbjct: 189 GSG-ASYPDEPKINGGLPLDLVS 210
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 364 (133.2 bits), Expect = 8.4e-31, Sum P(2) = 8.4e-31
Identities = 81/245 (33%), Positives = 145/245 (59%)
Query: 705 VEFSADQYGSRFIQQKLETATTEE--KNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTA 762
++ + DQ+G RF+Q+KLET + +++++++I P L L+ D FGNY++QK ++ TA
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 763 SQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV-----KELDG--HIMRC 815
Q L + +V +S+ YG R +QK I+ V+ + Q ++ +E ++
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTL 335
Query: 816 VRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQ--VVTLSTHPYGCRVIQRVLEHCHDEKT 873
+ D NGNHVIQKCI FI+ +Q ++T+STH +GC V+Q++L C ++
Sbjct: 336 INDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQI 395
Query: 874 QSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKP--HERSAIIKKLTGQIVQMSQQKFAS 931
I + +I+Q + L DQ+GNY++Q +L+ + + + + +L+ ++ Q+S KF+S
Sbjct: 396 FKISV-KIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCLKFSS 454
Query: 932 NVIEK 936
NV+EK
Sbjct: 455 NVVEK 459
Score = 152 (58.6 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 46/194 (23%), Positives = 99/194 (51%)
Query: 684 LDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEK-NMVF----QEI-- 736
L ++ + + K + I +V + S +QYG+R +Q+ ++T E + +++ QE
Sbjct: 269 LCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTS 328
Query: 737 MPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT--GHVLTLSLQMYGCRVIQKAIE 794
+ Q ++L+ D+ GN+VIQK + S+ + D + +++T+S +GC V+QK +
Sbjct: 329 IEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLS 388
Query: 795 VVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVL--TFYDQVVTLS 852
V L Q ++ ++ + + DQ GN++IQ ++ D L +++ LS
Sbjct: 389 VCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLS 448
Query: 853 THPYGCRVIQRVLE 866
+ V+++ ++
Sbjct: 449 CLKFSSNVVEKFIK 462
Score = 120 (47.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 48/219 (21%), Positives = 109/219 (49%)
Query: 805 VKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQV----VTLSTHPYGCRV 860
+++LD ++ DQ G +QK +E P ++ + Y+Q+ + L P+G +
Sbjct: 210 LRDLD--YIKLATDQFGCRFLQKKLE-TPSES-NMVRDLMYEQIKPFFLDLILDPFGNYL 265
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEH-GKPHERSAIIK---- 915
+Q++ ++ E+ +++++ I +V ++ +QYG +Q +++ + IIK
Sbjct: 266 VQKLCDYLTAEQ-KTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQ 324
Query: 916 KLTG--QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFAN 973
+ T Q+V + ++VI+KC+ +P++ +++ + +E+N + + +
Sbjct: 325 EFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAI---VEQNNIITISTH-KHGC 380
Query: 974 YVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIV 1012
V+QK+L C QQ+ I +I L L +G +I+
Sbjct: 381 CVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYII 419
Score = 60 (26.2 bits), Expect = 8.4e-31, Sum P(2) = 8.4e-31
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 411 NNASLMADGHKSALS-SSNSYLKGPCTPTLNGGGNSPSHHQVMGNMN-SAFSNF 462
+N SLM+ H+ LS +S L P TP G N+ +HQ +++ S F+ F
Sbjct: 21 SNNSLMSYNHQPQLSINSVQSLLEPVTPPPLGQMNNKRNHQKAHSLDLSGFNQF 74
Score = 57 (25.1 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 27/106 (25%), Positives = 47/106 (44%)
Query: 241 LGSSANKQGMPSAQSIGTSASHSYASALGASLS--RSTTPDPQLMARAPSPRIPTAGVGR 298
LG NK+ A S+ S + + S+ + L+ +T+ + +P+P + G
Sbjct: 51 LGQMNNKRNHQKAHSLDLSGFNQFISSTQSPLALMNNTSTSNSANSFSPNPNAASNSTGL 110
Query: 299 ASSMDKRTVSGPL----PLNGVSPSLKDSAE--IVA-ALSGLNLST 337
++SM PL L P K S + +VA + SG+N S+
Sbjct: 111 SASMANPPAILPLINEFDLEMDGPRRKSSHDFTVVAPSNSGVNTSS 156
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 342 (125.4 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 90/276 (32%), Positives = 152/276 (55%)
Query: 704 VVEFSADQYGSRFIQQKLETATTEEKNM-VFQEIMPQA---LSLMTDVFGNYVIQKFFEH 759
+VEF+ D+ G RF+Q+ T + + + +F++++ LSL ++FGN+ +Q+ E
Sbjct: 149 LVEFATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLEC 208
Query: 760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKEL-DGHIMRCVRD 818
+ L + L + L L CRVIQ AI+ +++ T++ EL D +++R D
Sbjct: 209 SNTEEQEILTEHLASDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTYLVRLSID 268
Query: 819 QNGNHVIQKCIECVPEDAIQFIVLTFYDQ--VVTLSTHPYGCRVIQRVLE--------HC 868
QNGNHVIQK ++ +P A F+V F D ++ + YGCRVIQ +E C
Sbjct: 269 QNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQSTVETLSSDTYAEC 328
Query: 869 HDEKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQ 923
+ ++ + +M + ++ LA +++ NYVVQHV++ G R II++ L ++
Sbjct: 329 YQQRVVLLRSLMSGVTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDVIIEQCLLQNLLS 388
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEE 959
MSQ+K+AS+V+E ++FG R L EM+ I E
Sbjct: 389 MSQEKYASHVVE--VAFGCAPCR--LAAEMMNEIFE 420
Score = 222 (83.2 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 96/352 (27%), Positives = 169/352 (48%)
Query: 693 KCF-ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNY 751
K F +L E + + +G+ F+Q+ LE + TEE+ ++ + + +L D
Sbjct: 177 KLFRKLVEDRAIFLSLCCNMFGNFFVQRVLECSNTEEQEILTEHLASDLYNLCLDKSACR 236
Query: 752 VIQKFFEHGTASQVRELADQLTG-HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG 810
VIQ + L+ +L +++ LS+ G VIQK ++ + + + +V+
Sbjct: 237 VIQLAIQKLDVHLATRLSLELRDTYLVRLSIDQNGNHVIQKIVKTLPVSAWSFVVEFF-- 294
Query: 811 HIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHD 870
D N HV Q C IQ V TLS+ Y QRV+
Sbjct: 295 -----ADDDNLIHVCQDKYGC---RVIQ-------STVETLSSDTYAECYQQRVV----- 334
Query: 871 EKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQMSQQ 927
+S+M + ++ LA +++ NYVVQHV++ G R II++ L ++ MSQ+
Sbjct: 335 -LLRSLMSG-VTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDVIIEQCLLQNLLSMSQE 392
Query: 928 KFASNVIEKCLSFG-TPAERQA-LVNEML-GSI---EEN-EPLQVMMKDQFANYVVQKVL 980
K+AS+V+E ++FG P A ++NE+ G I + N + L +++ Q+ NYVVQK++
Sbjct: 393 KYASHVVE--VAFGCAPCRLAAEMMNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQKMI 450
Query: 981 ETC-------DDQQ-------LELILNRIKVHLNALKKYTYGKHIVARVEKL 1018
+ C D +Q LE I R+ + N L++++ GK I+ ++ +
Sbjct: 451 QICVLGQNARDQKQAEMYGMWLEKIRERVMRNANRLERFSSGKKIIEALQSM 502
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 333 (122.3 bits), Expect = 2.7e-27, P = 2.7e-27
Identities = 90/276 (32%), Positives = 151/276 (54%)
Query: 704 VVEFSADQYGSRFIQQKLETATTEEKNM-VFQEIMPQA---LSLMTDVFGNYVIQKFFEH 759
+VEF+ D+ G RF+Q+ T + + +F++++ LSL +++FGN+ +Q+ E
Sbjct: 146 LVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLEC 205
Query: 760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKEL-DGHIMRCVRD 818
+ L + L + L L CRVIQ AI+ +++ T++ EL D H++R D
Sbjct: 206 SNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHLVRLSID 265
Query: 819 QNGNHVIQKCIECVPEDAIQFIVLTFYDQ--VVTLSTHPYGCRVIQRVLE--------HC 868
QNGNHVIQK ++ +P + F+V F D ++ + YGCRVIQ +E C
Sbjct: 266 QNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVETLSTDQYAQC 325
Query: 869 HDEKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQ 923
+ + + +M + ++ LA +++ NYVVQHV++ G R II++ L ++
Sbjct: 326 YQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLLQNLLS 385
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEE 959
MSQ+K+AS+V+E ++F R LV EM+ I E
Sbjct: 386 MSQEKYASHVVE--VAFECAPYR--LVAEMMNEIFE 417
Score = 224 (83.9 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 98/353 (27%), Positives = 170/353 (48%)
Query: 693 KCF-ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNY 751
K F +L E + ++ +G+ F+Q+ LE + TEE+ ++ + + +L D
Sbjct: 174 KLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACR 233
Query: 752 VIQKFFEHGTASQVRELADQLTG-HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG 810
VIQ + L+ +L H++ LS+ G VIQK ++ + + T +V
Sbjct: 234 VIQLAIQKLDVHLATRLSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFF-- 291
Query: 811 HIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHD 870
D N HV Q C IQ V TLST Y RV+
Sbjct: 292 -----ADDDNLIHVCQDKYGC---RVIQ-------STVETLSTDQYAQCYQHRVI----- 331
Query: 871 EKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQMSQQ 927
+S+M + ++ LA +++ NYVVQHV++ G R II++ L ++ MSQ+
Sbjct: 332 -LLRSLMAG-VTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLLQNLLSMSQE 389
Query: 928 KFASNVIE---KCLSFGTPAERQALVNEML-GSI---EEN-EPLQVMMKDQFANYVVQKV 979
K+AS+V+E +C + AE ++NE+ G I + N + L +++ Q+ NYVVQ++
Sbjct: 390 KYASHVVEVAFECAPYRLVAE---MMNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQQM 446
Query: 980 LETC-------DDQQLELI---LNRI--KVHLNA--LKKYTYGKHIVARVEKL 1018
++TC D +Q E+ L +I +V NA L++++ GK I+ ++ +
Sbjct: 447 IQTCVLGQNARDQKQSEMYGMWLEKIHGRVMRNAHRLERFSSGKKIIEALQSM 499
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 333 (122.3 bits), Expect = 2.7e-27, P = 2.7e-27
Identities = 90/276 (32%), Positives = 151/276 (54%)
Query: 704 VVEFSADQYGSRFIQQKLETATTEEKNM-VFQEIMPQA---LSLMTDVFGNYVIQKFFEH 759
+VEF+ D+ G RF+Q+ T + + +F++++ LSL +++FGN+ +Q+ E
Sbjct: 146 LVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLEC 205
Query: 760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKEL-DGHIMRCVRD 818
+ L + L + L L CRVIQ AI+ +++ T++ EL D H++R D
Sbjct: 206 SNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHLVRLSID 265
Query: 819 QNGNHVIQKCIECVPEDAIQFIVLTFYDQ--VVTLSTHPYGCRVIQRVLE--------HC 868
QNGNHVIQK ++ +P + F+V F D ++ + YGCRVIQ +E C
Sbjct: 266 QNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVETLSTDQYAQC 325
Query: 869 HDEKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQ 923
+ + + +M + ++ LA +++ NYVVQHV++ G R II++ L ++
Sbjct: 326 YQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLLQNLLS 385
Query: 924 MSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEE 959
MSQ+K+AS+V+E ++F R LV EM+ I E
Sbjct: 386 MSQEKYASHVVE--VAFECAPYR--LVAEMMNEIFE 417
Score = 224 (83.9 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 98/353 (27%), Positives = 170/353 (48%)
Query: 693 KCF-ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNY 751
K F +L E + ++ +G+ F+Q+ LE + TEE+ ++ + + +L D
Sbjct: 174 KLFRKLVEDRAIFLSLCSNMFGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACR 233
Query: 752 VIQKFFEHGTASQVRELADQLTG-HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG 810
VIQ + L+ +L H++ LS+ G VIQK ++ + + T +V
Sbjct: 234 VIQLAIQKLDVHLATRLSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFF-- 291
Query: 811 HIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHD 870
D N HV Q C IQ V TLST Y RV+
Sbjct: 292 -----ADDDNLIHVCQDKYGC---RVIQ-------STVETLSTDQYAQCYQHRVI----- 331
Query: 871 EKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQMSQQ 927
+S+M + ++ LA +++ NYVVQHV++ G R II++ L ++ MSQ+
Sbjct: 332 -LLRSLMAG-VTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLLQNLLSMSQE 389
Query: 928 KFASNVIE---KCLSFGTPAERQALVNEML-GSI---EEN-EPLQVMMKDQFANYVVQKV 979
K+AS+V+E +C + AE ++NE+ G I + N + L +++ Q+ NYVVQ++
Sbjct: 390 KYASHVVEVAFECAPYRLVAE---MMNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQQM 446
Query: 980 LETC-------DDQQLELI---LNRI--KVHLNA--LKKYTYGKHIVARVEKL 1018
++TC D +Q E+ L +I +V NA L++++ GK I+ ++ +
Sbjct: 447 IQTCVLGQNARDQKQSEMYGMWLEKIHGRVMRNAHRLERFSSGKKIIEALQSM 499
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 339 (124.4 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 92/345 (26%), Positives = 174/345 (50%)
Query: 669 SEAGGSLDES--FASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATT 726
S+ G++ + F + E+ ++ K L+++ +++ + DQYG RF+Q+K++ +
Sbjct: 250 SDFAGTVTQPIRFPQKIDKEYLASINK-LPLTQLKSEILKLAKDQYGCRFLQKKIDESLV 308
Query: 727 EEKNM-------VFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTL 779
+ +F +I L+ D FGNY+IQK + S + L + L ++ +
Sbjct: 309 PNYQVRLANFEIIFNQIYSHVYELIVDPFGNYLIQKLIVYCNESNLDLLMEILQYNLFQI 368
Query: 780 SLQMYGCRVIQKAIEVVELDQQTQM-VKELDGHIMRCVRDQNGNHVIQKCI-ECVPEDAI 837
S+ +G R +QK I+ + Q + +K L +I+ ++D NGNHVIQK + + P D
Sbjct: 369 SINQHGTRALQKIIDSLNNSHQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEPPDC- 427
Query: 838 QFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEI-LQSVCMLAQDQYGNY 896
QFI + D + ++TH +GC V+Q+ L H ++ + ++ +L DQ+GNY
Sbjct: 428 QFIYDSIIDDLYIVATHKHGCCVLQKCLNHVTLQQLGEFSRAILKFENFKLLINDQFGNY 487
Query: 897 VVQHVLEHGKPHERSAIIKKLTG-QIVQMSQQKFASNVIEKCLS--FGTPAERQALVN-- 951
V+Q+++ I + I + KF+SNV+EK L + + + N
Sbjct: 488 VLQYLISINSLDINFQIFQNFVNFGISNLCNLKFSSNVVEKFLKNCYANESVNVSFSNLK 547
Query: 952 -EMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRI 995
E++ I ++ L V++ D + NYV+Q +++ + Q+ N I
Sbjct: 548 FELIYIILVSD-LNVLINDPYGNYVIQTMIDIMVNPQVNYQNNNI 591
Score = 212 (79.7 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 58/261 (22%), Positives = 123/261 (47%)
Query: 771 QLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVK------ELDGHIMRCVRDQNGNH 823
QL +L L+ YGCR +QK I E + + Q ++ ++ H+ + D GN+
Sbjct: 281 QLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFGNY 340
Query: 824 VIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ 883
+IQK I E + ++ + +S + +G R +Q++++ ++ +++ +
Sbjct: 341 LIQKLIVYCNESNLDLLMEILQYNLFQISINQHGTRALQKIIDSLNNSHQLGLLIKGLKP 400
Query: 884 SVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTP 943
+ L +D GN+V+Q +L +P + I + + ++ K V++KCL+ T
Sbjct: 401 YIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCLNHVTL 460
Query: 944 AERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCD-DQQLELILNRIKVHLNAL 1002
+ + E +I + E ++++ DQF NYV+Q ++ D ++ N + ++ L
Sbjct: 461 QQ----LGEFSRAILKFENFKLLINDQFGNYVLQYLISINSLDINFQIFQNFVNFGISNL 516
Query: 1003 KKYTYGKHIVARVEKLVAAGE 1023
+ ++V + K A E
Sbjct: 517 CNLKFSSNVVEKFLKNCYANE 537
Score = 39 (18.8 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 30 QQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLF-KKLSDNK-GGFLN 87
QQQ Q + +S+ + + L I + +A P S S L + LS+ G F
Sbjct: 51 QQQQQQGDSLQGQSSSLNQQSGLVITPATTATPASTSSASKSSSLHARSLSNGATGSFYG 110
Query: 88 EEEL 91
+L
Sbjct: 111 NNKL 114
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 258 (95.9 bits), Expect = 7.8e-19, P = 7.8e-19
Identities = 70/243 (28%), Positives = 126/243 (51%)
Query: 762 ASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV-RDQN 820
A Q L + G +L + + CRV+Q A++ + Q+++EL + + DQ
Sbjct: 156 AEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQI 215
Query: 821 GNHVIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCRVIQRVLEH--------CHD 870
HVIQ+ ++ +P D F V L+ D ++ + YGCR++Q+V++ C
Sbjct: 216 SIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFK 275
Query: 871 EKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQMS 925
+ Q + +M I+++ L+ +++ NYV+Q+V++ E R II K L ++ MS
Sbjct: 276 FRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMS 335
Query: 926 QQKFASNVIEKCLSFGTPAERQALVNEMLGS----IEEN-EPLQVMMKDQFANYVVQKVL 980
Q K+AS+VIE F PA ++ E+ +E N + L +++ Q+ NYVVQ+++
Sbjct: 336 QDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMI 395
Query: 981 ETC 983
C
Sbjct: 396 SIC 398
Score = 219 (82.2 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 61/235 (25%), Positives = 120/235 (51%)
Query: 702 GHVVEFSADQYGSRFIQQKLETATTEE-KNMVFQEIMPQA---LSLMTDVFGNYVIQKFF 757
G +++F+ D G +F++ + ++ + VF++ + L GN+++QK
Sbjct: 91 GQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLV 150
Query: 758 EHGTASQVRELADQLT-GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV 816
E T ++ REL Q+ G +L + + CRV+Q A++ + Q+++EL + +
Sbjct: 151 ELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAM 210
Query: 817 -RDQNGNHVIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCRVIQRVLEH------ 867
DQ HVIQ+ ++ +P D F V L+ D ++ + YGCR++Q+V++
Sbjct: 211 CTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPK 270
Query: 868 --CHDEKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK 916
C + Q + +M I+++ L+ +++ NYV+Q+V++ E R II K
Sbjct: 271 LPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDK 325
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 255 (94.8 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 70/243 (28%), Positives = 126/243 (51%)
Query: 762 ASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV-RDQN 820
A Q L + G +L + + CRV+Q A++ + Q+++EL + + DQ
Sbjct: 156 AEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQI 215
Query: 821 GNHVIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCRVIQRVLEH--------CHD 870
HVIQ+ ++ +P D F V L+ D ++ + YGCR++Q+V++ C
Sbjct: 216 SIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFK 275
Query: 871 EKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQMS 925
+ Q + +M I+++ L+ +++ NYV+Q+V++ E R II K L ++ MS
Sbjct: 276 FRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMS 335
Query: 926 QQKFASNVIEKCLSFGTPAERQALVNEMLGS----IEEN-EPLQVMMKDQFANYVVQKVL 980
Q K+AS+VIE F PA ++ E+ +E N + L +++ Q+ NYVVQ+++
Sbjct: 336 QDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVELNRDALDILLFHQYGNYVVQQMI 395
Query: 981 ETC 983
C
Sbjct: 396 SIC 398
Score = 218 (81.8 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 61/235 (25%), Positives = 121/235 (51%)
Query: 702 GHVVEFSADQYGSRFIQQKLETATTEE-KNMVFQEIMPQA---LSLMTDVFGNYVIQKFF 757
G +++F+ D G +F++ + ++ + VF+++ + L GN+++QK
Sbjct: 91 GLLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKLTESTTLFVGLCHSRNGNFIVQKLV 150
Query: 758 EHGTASQVRELADQLT-GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCV 816
E T ++ REL Q+ G +L + + CRV+Q A++ + Q+++EL + +
Sbjct: 151 ELATPAEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAM 210
Query: 817 -RDQNGNHVIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCRVIQRVLEH------ 867
DQ HVIQ+ ++ +P D F V L+ D ++ + YGCR++Q+V++
Sbjct: 211 CTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPK 270
Query: 868 --CHDEKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK 916
C + Q + +M I+++ L+ +++ NYV+Q+V++ E R II K
Sbjct: 271 LPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDK 325
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 262 (97.3 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 68/240 (28%), Positives = 130/240 (54%)
Query: 765 VRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG-HIMRCVRDQNGNH 823
VR++ D G ++ + L + CRV+Q +I+ ++ ++V+++ + DQ H
Sbjct: 222 VRKMCDN--G-LIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKISSLDFLPLCTDQCAIH 278
Query: 824 VIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCRVIQRVLE--------HCHDEKT 873
V+QK ++ +P A F V L D ++T+ YGCR++Q+ ++ HC + +
Sbjct: 279 VLQKVVKLLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTIDKLSDNPKLHCFNTRL 338
Query: 874 QSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK-LTGQIVQMSQQK 928
Q + +M + ++ L+ +++ NYVVQ+V++ E R II+K L I+ MSQ K
Sbjct: 339 QLLHGLMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTIIEKCLLRNILSMSQDK 398
Query: 929 FASNVIEKCLSFGTPAERQALVNEML-GSIEENEP----LQVMMKDQFANYVVQKVLETC 983
+AS+V+E F P +++E+ G +++ E L +++ Q+ NYVVQ+++ C
Sbjct: 399 YASHVVEGAFLFAPPLLLSEMMDEIFDGYVKDQETNRDALDILLFHQYGNYVVQQMISIC 458
Score = 246 (91.7 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 62/235 (26%), Positives = 122/235 (51%)
Query: 702 GHVVEFSADQYGSRFIQQKLETATTEEKNMV-FQEIMPQAL---SLMTDVFGNYVIQKFF 757
G +++F+ D+ G +F+++ E + V F ++ Q SL GN++IQKF
Sbjct: 151 GSLIDFAMDRTGVKFLERHFPEDHDNEMHFVLFDKLTEQGAVFTSLCRSAAGNFIIQKFV 210
Query: 758 EHGTASQVRELADQLTGH-VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG-HIMRC 815
EH T + L ++ + ++ + L + CRV+Q +I+ ++ ++V+++ +
Sbjct: 211 EHATLDEQERLVRKMCDNGLIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKISSLDFLPL 270
Query: 816 VRDQNGNHVIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCRVIQRVLE------- 866
DQ HV+QK ++ +P A F V L D ++T+ YGCR++Q+ ++
Sbjct: 271 CTDQCAIHVLQKVVKLLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTIDKLSDNPK 330
Query: 867 -HCHDEKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--RSAIIKK 916
HC + + Q + +M + ++ L+ +++ NYVVQ+V++ E R II+K
Sbjct: 331 LHCFNTRLQLLHGLMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTIIEK 385
Score = 39 (18.8 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 286 APSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSA---EIVAALSGLNLSTDGVAD 342
+P P ++ R +++ T GPL L L D + E A + N T V +
Sbjct: 59 SPHPFAKSSDPCRLAALTPSTPKGPLNLTPADFGLADFSVGNESFADFTANN--TSFVGN 116
Query: 343 QENNSRS 349
++N RS
Sbjct: 117 VQSNVRS 123
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 248 (92.4 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 86/343 (25%), Positives = 160/343 (46%)
Query: 688 KSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDV 747
++N T F +EI VE D +G+ IQ+ E++ ++ + + + D
Sbjct: 468 ETNATLIF--NEIYFKAVELMIDPFGNYLIQKLFTMINLEQRLVLINQCSNELFRIALDP 525
Query: 748 FGNYVIQKFFEH-GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI---EVVELDQQTQ 803
G +QK + T ++ + L +++ LS + G V+QK + + D +
Sbjct: 526 HGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDLNGNHVVQKILTKFNTISSDSNSS 585
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
DG + QN N I D IQ +L Y ++ H +GC V+QR
Sbjct: 586 DSNR-DG-----AQHQNQNQFIF--------DIIQANLL--Y-----IACHRHGCCVLQR 624
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEH---GKPHERS------AII 914
L++ + ++ Q + EI + L+ D YGNYVVQ+VL G + + II
Sbjct: 625 CLDYGNKQQCQQLSQ-EIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIII 683
Query: 915 KKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANY 974
+++ +Q+S KF SNVIEKCL + ++ L++ ++ ++ + ++ D F NY
Sbjct: 684 QEIKSNFIQLSLHKFGSNVIEKCLKISSISKD--LIDNLI-VLDHGQAFNQLLNDPFGNY 740
Query: 975 VVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEK 1017
V+Q L+ + +Q E + + L +K +G+ I+ ++++
Sbjct: 741 VLQTSLDVANLEQFEQLSKILLPLLPNIKSTPHGRRILNKIQQ 783
Score = 222 (83.2 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 47/135 (34%), Positives = 80/135 (59%)
Query: 696 ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQK 755
+L + G ++ DQ+G RF+Q++L T ++F EI +A+ LM D FGNY+IQK
Sbjct: 440 KLQDFTGSILTLCKDQHGCRFLQRELINETNA--TLIFNEIYFKAVELMIDPFGNYLIQK 497
Query: 756 FFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV-KELDGHIMR 814
F Q L +Q + + ++L +G R +QK I+V+E +++ +++ + L +I+
Sbjct: 498 LFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVV 557
Query: 815 CVRDQNGNHVIQKCI 829
RD NGNHV+QK +
Sbjct: 558 LSRDLNGNHVVQKIL 572
Score = 152 (58.6 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 52/250 (20%), Positives = 109/250 (43%)
Query: 779 LSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVP-EDAI 837
L + +G +IQK ++ L+Q+ ++ + + R D +G +QK I+ + + I
Sbjct: 485 LMIDPFGNYLIQKLFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEI 544
Query: 838 QFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYV 897
+ I Y +V LS G V+Q++L + + S D AQ Q N
Sbjct: 545 EIITRNLYSNIVVLSRDLNGNHVVQKILTKFNTISSDSNSSDSNRDG----AQHQNQNQF 600
Query: 898 VQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSI 957
+ +++ ++ ++ + V+++CL +G + Q L E+
Sbjct: 601 IFDIIQ---------------ANLLYIACHRHGCCVLQRCLDYGNKQQCQQLSQEIA--- 642
Query: 958 EENEPLQVMMKDQFANYVVQKVL---------ETCDDQQLELILNRIKVHLNALKKYTYG 1008
+++ + D + NYVVQ VL + D+Q +++I+ IK + L + +G
Sbjct: 643 --KHTIKLSL-DPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSNFIQLSLHKFG 699
Query: 1009 KHIVARVEKL 1018
+++ + K+
Sbjct: 700 SNVIEKCLKI 709
Score = 141 (54.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 45/232 (19%), Positives = 103/232 (44%)
Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
+L D TG +LTL +GCR +Q+ E++ T + E+ + + D GN++IQ
Sbjct: 440 KLQD-FTGSILTLCKDQHGCRFLQR--ELINETNATLIFNEIYFKAVELMIDPFGNYLIQ 496
Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
K + + ++ +++ ++ P+G R +Q++++ + I+ + ++
Sbjct: 497 KLFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIV 556
Query: 887 MLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ-MSQQKFASNVIEKCLSFGTPAE 945
+L++D GN+VVQ +L + Q +Q +F ++I+ L +
Sbjct: 557 VLSRDLNGNHVVQKILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIACHR 616
Query: 946 RQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV 997
V + + Q + + A + ++ L+ + ++ +LN+ V
Sbjct: 617 HGCCVLQRCLDYGNKQQCQ-QLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSV 667
Score = 127 (49.8 bits), Expect = 0.00035, P = 0.00035
Identities = 43/203 (21%), Positives = 93/203 (45%)
Query: 674 SLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVF 733
S D + + S D + F I +++ + ++G +Q+ L+ ++ +
Sbjct: 579 SSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIACHRHGCCVLQRCLDYGNKQQCQQLS 638
Query: 734 QEIMPQALSLMTDVFGNYVIQ----KFFEHGTA----SQVRELADQ-LTGHVLTLSLQMY 784
QEI + L D +GNYV+Q K+ G A +QV ++ Q + + + LSL +
Sbjct: 639 QEIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSNFIQLSLHKF 698
Query: 785 GCRVIQKAIEVVELDQQT-QMVKELD-GHIM-RCVRDQNGNHVIQKCIECVPEDAIQFIV 841
G VI+K +++ + + + LD G + + D GN+V+Q ++ + + +
Sbjct: 699 GSNVIEKCLKISSISKDLIDNLIVLDHGQAFNQLLNDPFGNYVLQTSLDVANLEQFEQLS 758
Query: 842 LTFYDQVVTLSTHPYGCRVIQRV 864
+ + + P+G R++ ++
Sbjct: 759 KILLPLLPNIKSTPHGRRILNKI 781
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 236 (88.1 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 83/412 (20%), Positives = 177/412 (42%)
Query: 613 NLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSG-GVMGPWHSEA 671
N Y N ++ G +L NS + +G P RN N+ G GV W S
Sbjct: 138 NDYVNQSYRYDTIGGGNGMLNNSFL-NGVPC--ASRN-NVSDYYTNIFGYGVNNSWRSNE 193
Query: 672 GGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNM 731
G + ++ A+S ++ + G + D+ S+ +++ + T E +M
Sbjct: 194 GCTYNQDQAASSMENGR-------------GSYFSIATDRVWSKELEKTIFVGTKETIDM 240
Query: 732 VFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHV---LTLSLQMYGCRV 788
+F ++ LM D FGN V++ ++ Q+ + D +T H+ + + G
Sbjct: 241 IFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVDVVTRHISKFVNICFNPIGTLA 300
Query: 789 IQKAIEVVELDQQTQMVKELDGH---IMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY 845
IQ + + Q+ + +D ++ R+ N +VI C + ++
Sbjct: 301 IQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYVILACFRMFTSSQCRRLLEVVS 360
Query: 846 DQVVTLSTHPYGCRVIQRVL--EHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLE 903
++ GC ++Q+ E + + + ++ E+++ L + +GNYVVQ+V+E
Sbjct: 361 QHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYVVE 420
Query: 904 HGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPL 963
HE ++ KL +++ K+ S+V++K L + + +V ++L I+
Sbjct: 421 LDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKL-RGIDSKLIVVDLLRGID----- 474
Query: 964 QVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015
++ D F NYV+Q + +++ I+ ++ ++ +G I+ ++
Sbjct: 475 -TLLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEKL 525
Score = 131 (51.2 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 57/256 (22%), Positives = 115/256 (44%)
Query: 774 GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMR-C--VRDQNGNHVIQKCI- 829
G +++ + ++K I V + M+ DG I+ C + D GN V++ I
Sbjct: 211 GSYFSIATDRVWSKELEKTI-FVGTKETIDMI--FDGLIVGICELMVDPFGNDVVKLLIG 267
Query: 830 ECVPEDAIQFI-VLTFY-DQVVTLSTHPYGCRVIQRVLEHCHDEKTQSI--MMDEILQSV 885
+C E I + V+T + + V + +P G IQ +L H+ I +MD I
Sbjct: 268 KCSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVA 327
Query: 886 CMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFG-TPA 944
L ++ YV+ + +++ ++ Q++ + ++++C P
Sbjct: 328 LQLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPN 387
Query: 945 E--RQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNAL 1002
RQ L++E++ L++ + NYVVQ V+E + + +L++N++ + L
Sbjct: 388 HEIRQRLISEVI-----EHALKLCLNCH-GNYVVQYVVELDNQHETDLLVNKLLRNYAHL 441
Query: 1003 KKYTYGKHIVARVEKL 1018
+ YG H+V ++ KL
Sbjct: 442 ARNKYGSHVVQKLLKL 457
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 213 (80.0 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 50/187 (26%), Positives = 106/187 (56%)
Query: 697 LSEI--AGHVVEFSADQYGSRFIQQKLE-TATTEEKNMVFQEIMPQA---LSLMTDVFGN 750
LSE+ +G +++F+ D+ G +F+++ ++ + T+ +K +F++++ + L L T++FGN
Sbjct: 183 LSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGN 242
Query: 751 YVIQKF-------FEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
Y +Q+ ++ + +L + ++ + + L + CRVIQ +++ ++L +
Sbjct: 243 YFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACK 302
Query: 804 MVKEL--DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCR 859
+V+ L D ++ DQN NHVIQK + +P +FIV + + + + YGCR
Sbjct: 303 LVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCR 362
Query: 860 VIQRVLE 866
V+Q ++E
Sbjct: 363 VVQTIIE 369
Score = 57 (25.1 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 21/119 (17%), Positives = 49/119 (41%)
Query: 880 EILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLS 939
E L+ +C D+YG VVQ ++E + + + + + Q+ ++V +C
Sbjct: 349 EHLRQICF---DKYGCRVVQTIIEKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQE 405
Query: 940 FGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVH 998
T N ++ I N+ L V + +++ +L ++ ++ + +H
Sbjct: 406 LAT----NEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLH 460
Score = 48 (22.0 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 421 KSALSSSNSYLKGPCTPTLNGGGN--SPSH-----HQV-MGNMNSAFSNFSL 464
+S + +N + K P PT GN +P+H H+ M N NS FS+
Sbjct: 3 QSKMRYTNQFRKTPQKPTSTEVGNHHTPAHSPMAQHETSMWNFNSLNPYFSM 54
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 213 (80.0 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 50/187 (26%), Positives = 106/187 (56%)
Query: 697 LSEI--AGHVVEFSADQYGSRFIQQKLE-TATTEEKNMVFQEIMPQA---LSLMTDVFGN 750
LSE+ +G +++F+ D+ G +F+++ ++ + T+ +K +F++++ + L L T++FGN
Sbjct: 183 LSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGN 242
Query: 751 YVIQKF-------FEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
Y +Q+ ++ + +L + ++ + + L + CRVIQ +++ ++L +
Sbjct: 243 YFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACK 302
Query: 804 MVKEL--DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCR 859
+V+ L D ++ DQN NHVIQK + +P +FIV + + + + YGCR
Sbjct: 303 LVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCR 362
Query: 860 VIQRVLE 866
V+Q ++E
Sbjct: 363 VVQTIIE 369
Score = 57 (25.1 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 21/119 (17%), Positives = 49/119 (41%)
Query: 880 EILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLS 939
E L+ +C D+YG VVQ ++E + + + + + Q+ ++V +C
Sbjct: 349 EHLRQICF---DKYGCRVVQTIIEKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQE 405
Query: 940 FGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVH 998
T N ++ I N+ L V + +++ +L ++ ++ + +H
Sbjct: 406 LAT----NEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLH 460
Score = 48 (22.0 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 421 KSALSSSNSYLKGPCTPTLNGGGN--SPSH-----HQV-MGNMNSAFSNFSL 464
+S + +N + K P PT GN +P+H H+ M N NS FS+
Sbjct: 3 QSKMRYTNQFRKTPQKPTSTEVGNHHTPAHSPMAQHETSMWNFNSLNPYFSM 54
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 222 (83.2 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 68/300 (22%), Positives = 149/300 (49%)
Query: 697 LSEI--AGHVVEFSADQYGSRFIQQKLE-TATTEEKNMVFQEIMPQA---LSLMTDVFGN 750
LSE+ +G +++F+ D+ G +F+++ ++ + T+ +K +F++++ + L L T++FGN
Sbjct: 185 LSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGN 244
Query: 751 YVIQKFF-------EHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803
Y++Q + G + +L + ++ + + L + CRVIQ +++ ++L +
Sbjct: 245 YLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACK 304
Query: 804 MVKEL--DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIV--LTFYDQVVTLSTHPYGCR 859
+V+ L D ++ DQN NHVIQK + +P +FIV + + + + + YGCR
Sbjct: 305 LVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCR 364
Query: 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG 919
V+Q ++E + + ++ + Q++ A + V E + II+ +
Sbjct: 365 VVQTIIEKLTAD-SMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHI-- 421
Query: 920 QIVQMSQQKFASNVIEKCLSFGTPA-ERQALVNEMLGSIEENEPLQV---MMKDQFANYV 975
+ + +IEKCL + ++ + ++ + PL++ MM + F Y+
Sbjct: 422 -VSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYI 480
Score = 178 (67.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 84/314 (26%), Positives = 142/314 (45%)
Query: 695 FELSE-IAGHVVEF---SADQYGSRFIQQKL--ETATTEEKNMVFQEIMPQALSL-MTDV 747
F+L E + G +F S + +G+ +Q + AT ++ QE + +S MTD+
Sbjct: 221 FQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDM 280
Query: 748 ----FGNYVIQKFFEHGTASQVRELADQLT--GHVLTLSLQMYGCRVIQKAIEVVELDQQ 801
F VIQ ++ S +L L ++ + + VIQK + V+ L
Sbjct: 281 CLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNW 340
Query: 802 TQMVKEL--DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859
+V + H+ + D+ G V+Q IE + D++ V L++ R
Sbjct: 341 EFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMN----------VDLTSAAQNLR 390
Query: 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGK-PHERSAIIKK-L 917
+R L+ +M + LA ++Y NY++QH++ + R II+K L
Sbjct: 391 --ERALQR---------LMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCL 439
Query: 918 TGQIVQMSQQKFASNVIEKCLSFGTPAERQA-LVNEML-GSIEE----NEPLQVMMKDQF 971
++ +SQ+KFAS+V+EK P E A +++E+ G I + L +MM QF
Sbjct: 440 MRNLLSLSQEKFASHVVEKAF-LHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQF 498
Query: 972 ANYVVQKVLETCDD 985
NYVVQ +L C D
Sbjct: 499 GNYVVQCMLTICCD 512
Score = 46 (21.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 583 LQKAYLGALLSPQKSQYGVPYLNKSGS---LNNNLYGN 617
L+KA G+L S QK Q + + L+ N++GN
Sbjct: 207 LEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGN 244
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 201 (75.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 72/277 (25%), Positives = 130/277 (46%)
Query: 736 IMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEV 795
++P+ L +D GN V+QK FE+ + + + H+ + + G QK I+V
Sbjct: 681 MLPEIAELASDYLGNTVVQKLFEYSSEPIKERILVPIAPHLGEIGVHKNGTWAAQKIIDV 740
Query: 796 VELDQQTQMVKE-LDGHIMRCVRDQNGNHVIQKCIEC-VPEDAIQFIVLTFYDQVVTLST 853
+ Q +M+ + L + + DQ GN+V+Q C+ P + F+ T ++ ++
Sbjct: 741 AKTPAQMRMIVDALRPYTVPLFLDQYGNYVLQCCLRFGSPYN--DFVFETMLSRMWEIAQ 798
Query: 854 HPYGCRVIQRVLEHCHDEKTQSIMMDEI--LQSVCMLAQDQYGNYVVQHVLEHGK-PHER 910
+G R ++ LE H K Q M+ L SV LA + G ++ L+ PH R
Sbjct: 799 GRFGARAMRACLESHHATKDQQRMLAAAIALHSV-QLATNANGALLLTWFLDTCTFPHRR 857
Query: 911 SAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQ 970
+ + +L +V + K A + K ++ E + +V + L +E L+ ++ DQ
Sbjct: 858 TVLAPRLVPHLVHLCTHKVAYLTVLKVINQRNEPEARNIVLKALFFSPGDEVLEKILSDQ 917
Query: 971 FANY-VVQKVLET-CDDQQL--ELILNRIKVHLNALK 1003
+ ++ KVL T C D+ + E++ N KV L LK
Sbjct: 918 TSGATLIFKVLTTPCFDESMRPEVVKNVSKV-LTKLK 953
Score = 45 (20.9 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 28 QKQQQHLQEATQVNSASAADLEKELNIFRSGS 59
Q+QQQ Q+ Q ++S L EL + ++ S
Sbjct: 296 QQQQQQQQQQQQQQTSSLPPLLAELAMIKNNS 327
Score = 45 (20.9 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 617 NPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLD 676
+P +G S PL N P SP + G FP + + SG + GP G++
Sbjct: 91 SPFWGPPTSGHSTPLRENIPE---SPSQEG-----FPDLVPSTSGAMNGPARRTRAGTVP 142
Query: 677 ESFAS-SLLDE 686
F+ +L+E
Sbjct: 143 SRFSPVGVLNE 153
Score = 39 (18.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 41 NSASAADLEKELNIFRSGSAPPTVEGSLSSIDGL 74
N A+ D L RS P + S S DGL
Sbjct: 229 NWATGRDRATTLTSIRSSEGPASPSQSSFSRDGL 262
Score = 38 (18.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 437 PTLNGGGNSPSHHQVMGNMNSAFS 460
P+ +G N P+ G + S FS
Sbjct: 123 PSTSGAMNGPARRTRAGTVPSRFS 146
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 194 (73.4 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 67/333 (20%), Positives = 147/333 (44%)
Query: 695 FELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQ 754
F+ ++ F+ D+ S + + T E + ++ ++ LM D +G+ V+Q
Sbjct: 196 FDYNQCQASFSAFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQ 255
Query: 755 KFFEHGTASQVRELADQLTGHV---LTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGH 811
++ Q+ +L D +T + + + + G IQ + + + Q+ + +D
Sbjct: 256 LLMRRCSSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVD-- 313
Query: 812 IMRCVRDQ--NGNH---VIQKCIECVPEDAIQFIVLTFYD-QVVTLSTHPYGCRVIQRVL 865
++R V Q NH VI C P + L + + + H GC ++Q
Sbjct: 314 VVRTVALQLSKSNHAIFVILACFRLFPLHCRLLLELIVQNCHQIAIDQH--GCCLLQLCF 371
Query: 866 EHCHD---EKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIV 922
E Q ++M+ I ++ L + YGNYVVQ+++E + A++++L G
Sbjct: 372 NKDRVPNLEIRQRLIMEAIANAL-RLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYA 430
Query: 923 QMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLET 982
+++ K+ S+ ++K L + + +V ++L I+ ++ D F NYV+Q
Sbjct: 431 HLARNKYGSHAVQKLLKLRW-IDSRVIVIDLLREID------TLLLDPFGNYVIQTAWFV 483
Query: 983 CDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015
D ++ I+ ++ ++ +G ++ ++
Sbjct: 484 SKDDVRRMLRYHIERNIPMMRCNKFGNKVLEKL 516
Score = 41 (19.5 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 16/69 (23%), Positives = 25/69 (36%)
Query: 345 NNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYP--NMG 402
N R Q++ + +N GD M + FL S S ++ + Y N
Sbjct: 131 NQLRMSYQNDYAHQSYWYNTDGDGNGMLNNGFLNDVPSSSRDRVSDYYTNRFGYEGYNYW 190
Query: 403 KSGVGIDMN 411
+ G D N
Sbjct: 191 RGNEGFDYN 199
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 177 (67.4 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 56/257 (21%), Positives = 122/257 (47%)
Query: 715 RFIQQKLETA--TTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELA-DQ 771
R ++++++ T EE + + + L +D GN V+QK F++ + V+E+ ++
Sbjct: 751 RQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDY-CSDPVKEMMLER 809
Query: 772 LTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV-KELDGHIMRCVRDQNGNHVIQKCIE 830
+ H+ + + G QK ++V + Q +++ K L +I DQ GN+V+Q C++
Sbjct: 810 IAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQTCLK 869
Query: 831 C-VPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCM-L 888
P + F+ +Q ++ YG R ++ LE + Q +++ + + L
Sbjct: 870 FGAPMN--DFVFEAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYSVHL 927
Query: 889 AQDQYGNYVVQHVLEH-GKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSF--GTPAE 945
A + G ++ +++E+ PH + ++ IV++ + A N + K +S G A
Sbjct: 928 AMNGNGTLLLTYLVENMNYPHIPILLTRRFVQDIVRVCTHRLAYNSLLKIISISQGDTAC 987
Query: 946 RQALVNEMLGSIEENEP 962
+V+ +L + + P
Sbjct: 988 GDLVVDAILDTQNDLNP 1004
Score = 134 (52.2 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 58/278 (20%), Positives = 120/278 (43%)
Query: 675 LDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTE-EKNMVF 733
L + L D + S+ K L IA H+ + + G+ Q+ ++ A+TE + ++
Sbjct: 786 LGNTVVQKLFD-YCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIA 844
Query: 734 QEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI 793
+ + P L D FGNYV+Q + G A + + + ++ YG R ++ +
Sbjct: 845 KHLQPYIPLLFADQFGNYVVQTCLKFG-APMNDFVFEAILNQFWVIAQSRYGSRAVRACL 903
Query: 794 EVVEL--DQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLT--FYDQVV 849
E ++ +Q+ + + + + + NG ++ +E + I I+LT F +V
Sbjct: 904 ESPDVTEEQRVLVAAAITVYSVHLAMNGNGTLLLTYLVENMNYPHIP-ILLTRRFVQDIV 962
Query: 850 TLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH 908
+ TH + +++ D +++D IL + D N + + + E + +
Sbjct: 963 RVCTHRLAYNSLLKIISISQGDTACGDLVVDAILDT----QNDLNPNSLEKILFE--QTY 1016
Query: 909 ERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAER 946
S I K LT + + S ++ + + L GT +R
Sbjct: 1017 GPSFICKLLTHENISASHRQQLQSAVRNVL--GTMEDR 1052
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 56/232 (24%), Positives = 98/232 (42%)
Query: 249 GMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRAS--SMDKRT 306
G S++ +S+S + +L A L T +P + PSP + + + +S S R
Sbjct: 472 GSLSSRPKPSSSSRRRSQSLSAMLK---TSNPYM----PSPSLLSGSLANSSEHSSSPRL 524
Query: 307 VSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVAD--QENNSRSQNQHE---IDDRHSL 361
P+ VS S K +A + +GL ST +A+ ++S S N + + D ++
Sbjct: 525 RGSPIHNQPVSSS-KSTASLNTNNNGLRASTPEMANISTRSSSESNNTNSWPTVGDA-TI 582
Query: 362 FNLQGDSRHMKQHP-FLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGH 420
NL ++H H ++G SG + + +T +Y + + ++A L D
Sbjct: 583 ENL---TQHEPTHALWVGNLPSG--VSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSV 637
Query: 421 KSA---LSSSNS----YLKGP-CTPTLN-GGGNSPSHHQVMGNMNSAFSNFS 463
++A L N + P C +S S H + +N AFSN S
Sbjct: 638 ETAKHVLEELNGKRIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNVS 689
Score = 53 (23.7 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 46/180 (25%), Positives = 67/180 (37%)
Query: 259 SASHSYASALGASLSRSTTPDPQLMARAP-SPRI--PTAGVGRASSMDKRTVSGPLP-LN 314
SAS++ S +R TT P SPR+ PT G T S LP +
Sbjct: 236 SASNAANSGSNTIRARQTTRTRS--NTLPWSPRVFGPTLGYNTPPFGYPPTTSSALPNAS 293
Query: 315 GVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQH 374
G S S V+A +G + S A + S + + SL N G H
Sbjct: 294 GSSSSFFGLPTAVSASAGTSFSDISPAAPK---ASLENNIASNASSLLNPVGLD-HFSAA 349
Query: 375 PFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGP 434
R + HL S + + + S KSG ID + + +D + + SS + P
Sbjct: 350 SGWSR-DFNHLPASSLA-TARSSLTGNAKSG--IDSSVTGMPSDNYARVVESSTAEFFDP 405
Score = 45 (20.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 242 GSSANKQGMPSA--QSIGTSASHSYASALGASLSRS 275
GSS++ G+P+A S GTS S +A ASL +
Sbjct: 294 GSSSSFFGLPTAVSASAGTSFSDISPAAPKASLENN 329
Score = 40 (19.1 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 230 HLHHDLSSIDGLGSSA---NKQGMPSAQSIGTSAS 261
H H + SS + S + ++Q PS+ S T AS
Sbjct: 184 HTHFNPSSSSTVSSDSLESSQQKAPSSSSTATPAS 218
Score = 37 (18.1 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 60 APPTVEGSLSSIDGLFKKLSD 80
A + E S S++DGL K S+
Sbjct: 667 ASSSSESSHSAVDGLNKAFSN 687
>UNIPROTKB|F1SJG9 [details] [associations]
symbol:LOC100152831 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:CU062572
Ensembl:ENSSSCT00000005761 Uniprot:F1SJG9
Length = 647
Score = 185 (70.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 58/263 (22%), Positives = 120/263 (45%)
Query: 705 VEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQ 764
+ F+ D +R IQ ++ T E++ F+E+ + L + +++KF +G +Q
Sbjct: 172 IAFAHDS--TRVIQCYIQYGTEEQRKQAFEELRGDLVELSKAKYSRNIVKKFLMYGNKAQ 229
Query: 765 VRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
+ E+ GHV + +++ A + L+Q+ + +EL G+ + + +
Sbjct: 230 IAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADCP- 288
Query: 824 VIQKCIECVPEDAIQFI------VLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877
+ K +E PE ++ I +LT Q + H +V H K +S M
Sbjct: 289 TLDKVLEVQPEK-LELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTHA-PPKLRSEM 346
Query: 878 MDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEK- 936
++ I ++V LA G V H L HG P +R I+K + + +++ +++ V+
Sbjct: 347 IEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAA 406
Query: 937 --CLSFGTPAERQALVNEMLGSI 957
C+ T +Q +++E++ S+
Sbjct: 407 FDCID-DTKLVKQIIISEIINSL 428
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 185 (70.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 70/316 (22%), Positives = 150/316 (47%)
Query: 706 EFSADQYGSRFIQQKLETA--TTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTAS 763
+F A + R I++ +++ T EE ++ + ++ L +D GN V+QKFFE+ +
Sbjct: 162 QFEASKL--REIRKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEY-CSD 218
Query: 764 QVRE-LADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQM-VKELDGHIMRCVRDQNG 821
++E + +++ ++ + + G QK I+V ++Q + VK L + DQ G
Sbjct: 219 PIKEAMLERIAPYLAAIGIHKNGTWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFG 278
Query: 822 NHVIQKCIEC-VPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDE-KTQSIMMD 879
N+V Q C+ P++ F V+ + + +G R I+ LE+ + + Q++++
Sbjct: 279 NYVAQCCLRFKYPKNTFLFEVMARH--CCEIGQSRFGARAIRACLENENATFEQQALVVA 336
Query: 880 EILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIK-KLTGQIVQMSQQKFASNVIEKCL 938
I+ + +LA + G ++ +L++ R ++ L + K AS +I K +
Sbjct: 337 SIIINSHLLATNSNGMLLLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLI 396
Query: 939 SFGT-PAERQALVNEMLGSIEENEPLQVMMKDQFAN-YVVQKVLE--TCDDQ---QLELI 991
+ P R L+ + S E++ L +++DQ + KV+ + + Q L+
Sbjct: 397 NNKQEPESRNLLLKNLFFS-EKDNVLTYILQDQAVGPSFIHKVITYPSIGREFLAQFHLV 455
Query: 992 LNRIKVHLNALKKYTY 1007
+ R+ ++++A Y
Sbjct: 456 IKRVLINIHAQPNAVY 471
>UNIPROTKB|E1C1R5 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 OMA:RKDCDKE
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00574038 Ensembl:ENSGALT00000016546
ArrayExpress:E1C1R5 Uniprot:E1C1R5
Length = 638
Score = 182 (69.1 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 75/347 (21%), Positives = 155/347 (44%)
Query: 685 DEFKSNKTKCFE---LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQAL 741
D+FK K + + L++ + + + + Q ++K + E+ Q+++ +
Sbjct: 103 DDFKKKKKELKQSRQLNDRSNYDIIVKSKQIWESVRRKKCDKEKREKLMNELQKLLHGKI 162
Query: 742 SLMTDVFGNY-VIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
+ + VIQ F ++G Q +E ++L ++ LS Y +++K + Q
Sbjct: 163 KNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLVELSKSKYSRNIVKKFLMYGTKQQ 222
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAI--QFIVLT--FYDQVVTLSTHPY 856
+++K GH+ + +R + V++ + AI Q +LT Y + P
Sbjct: 223 IAEIIKSFKGHVKKMLRHAEASAVVEYAYN---DKAILEQRNMLTEELYGNTFQVYKTPI 279
Query: 857 GCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVL---------EHGKP 907
+ +VLE EK ++I+ DE+ Q + +AQ + V++H L H P
Sbjct: 280 -VPTLDKVLE-AQPEKREAIL-DEMKQILTPMAQKEA---VIKHSLVHKVFLDFFTHALP 333
Query: 908 HERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMM 967
+RS +I+ + ++ ++ + V CL GTP +R+ +V M IE+ +
Sbjct: 334 KQRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYIEK------IA 387
Query: 968 KDQFANYVVQKVLETCDDQQL--ELILNRIKVHLNALKKYTYGKHIV 1012
+F++ V+ + DD +L +LI+ + L +L +GK ++
Sbjct: 388 TGEFSHLVLLAAFDCIDDTKLVKQLIITELNASLPSLISNKHGKKVL 434
Score = 177 (67.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 67/291 (23%), Positives = 125/291 (42%)
Query: 677 ESFASSLLDEFKSNKTKCFELSEIA-GHVVEFSADQYGSRFIQQKLETATTEEKNMVFQE 735
ES D+ K K EL ++ G + + +R IQ ++ +++ F+E
Sbjct: 135 ESVRRKKCDKEKREKLMN-ELQKLLHGKIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEE 193
Query: 736 IMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI-E 794
+ + L + +++KF +GT Q+ E+ GHV + V++ A +
Sbjct: 194 LKDSLVELSKSKYSRNIVKKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYND 253
Query: 795 VVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPE--DAI---QFIVLTFYDQVV 849
L+Q+ + +EL G+ + + + K +E PE +AI +LT Q
Sbjct: 254 KAILEQRNMLTEELYGNTFQVYKTPIVP-TLDKVLEAQPEKREAILDEMKQILTPMAQKE 312
Query: 850 TLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE 909
+ H +V H K +S M++ I ++V LA G V H L HG P +
Sbjct: 313 AVIKHSLVHKVFLDFFTHALP-KQRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKD 371
Query: 910 RSAIIKKLTGQIVQMSQQKFASNVIEK---CLSFGTPAERQALVNEMLGSI 957
R I+K + I +++ +F+ V+ C+ T +Q ++ E+ S+
Sbjct: 372 RKVIVKTMKTYIEKIATGEFSHLVLLAAFDCID-DTKLVKQLIITELNASL 421
>ZFIN|ZDB-GENE-030131-9808 [details] [associations]
symbol:si:ch211-241o7.5 "si:ch211-241o7.5"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
ZFIN:ZDB-GENE-030131-9808 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000015757
EMBL:CR628386 IPI:IPI00799550 Ensembl:ENSDART00000127277
ArrayExpress:E9QJ83 Bgee:E9QJ83 Uniprot:E9QJ83
Length = 601
Score = 181 (68.8 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 63/283 (22%), Positives = 126/283 (44%)
Query: 688 KSNKTKCF-ELSEIA-GHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMT 745
K +TK EL ++ G + + +R +Q ++ + +++ VF E+ + L
Sbjct: 135 KQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSK 194
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQM 804
+ +++KF +G+ QV E+ G V + V++ A + L Q+ +
Sbjct: 195 SKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLML 254
Query: 805 VKELDGHIMRCVRDQNGNHVIQKCIECVP---EDAIQFI--VLTFYDQVVTLSTHPYGCR 859
+EL G+ ++ + ++K +E P E + + +LT Q + H +
Sbjct: 255 TEELYGNTFTVLKS-SVCPTLEKVLEANPGKLESILDEMKQILTPMAQKEAVIKHSLVHK 313
Query: 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG 919
V EH D K ++ M++ I ++V +A G V H L HG +R I+K +
Sbjct: 314 VFLDFFEHAPD-KQRTEMIESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKS 372
Query: 920 QIVQMSQQKFASNVIEK---CLSFGTPAERQALVNEMLGSIEE 959
I + + ++A V+ C+ T +Q +++EM+ S+ E
Sbjct: 373 YIAKFAMGEYAHLVLLAAFDCID-DTKLVKQIIISEMVSSLSE 414
Score = 171 (65.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 63/276 (22%), Positives = 129/276 (46%)
Query: 752 VIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGH 811
V+Q F + G+ Q +E+ D+L H++ LS Y +++K + +Q +++ G
Sbjct: 165 VLQCFIQFGSDKQRKEVFDELKEHIVELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGK 224
Query: 812 IMRCVRDQNGNHVIQKCIECVPEDAI--QFIVLT--FYDQVVTLSTHPYGCRVIQRVLEH 867
+ + +R + V++ + AI Q ++LT Y T+ C +++VLE
Sbjct: 225 VRQMLRHSEASSVVEYAYN---DKAILSQRLMLTEELYGNTFTVLKSSV-CPTLEKVLE- 279
Query: 868 CHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVL---------EHGKPHERSAIIKKLT 918
+ K +SI+ DE+ Q + +AQ + V++H L EH +R+ +I+ +
Sbjct: 280 ANPGKLESIL-DEMKQILTPMAQKEA---VIKHSLVHKVFLDFFEHAPDKQRTEMIESIR 335
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQK 978
+V M+ + V CL GT +R+ +V M I + ++A+ V+
Sbjct: 336 EAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKSYIAK------FAMGEYAHLVLLA 389
Query: 979 VLETCDDQQL--ELILNRIKVHLNALKKYTYGKHIV 1012
+ DD +L ++I++ + L+ + +GK ++
Sbjct: 390 AFDCIDDTKLVKQIIISEMVSSLSEIISNKHGKKVL 425
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 179 (68.1 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 63/283 (22%), Positives = 124/283 (43%)
Query: 710 DQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELA 769
D S +Q + E + +F ++ LM D +G+ V +K E T Q+ +
Sbjct: 161 DGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVL 220
Query: 770 DQLTGH---VLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHI-MRCVRDQNGNHVI 825
D + + L + +G IQ + + ++Q E ++ + +D + VI
Sbjct: 221 DIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVI 280
Query: 826 QKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSV 885
C ++++ ++ GC ++++++ E + ++ EI+
Sbjct: 281 LFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRE-LRDPLIKEIISIA 339
Query: 886 CMLAQDQYG----------NYVVQHVLEHGKPHE-RSAIIKKLTGQIVQMSQQKFASNVI 934
L + YG NYVVQ++L K +E SA+ K L G VQ+S K+ S+V+
Sbjct: 340 VRLCGNCYGTLTPKSLLVRNYVVQYLLRL-KDYEVTSALSKHLDGNYVQLSYDKYGSHVV 398
Query: 935 EKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQ 977
+KCL + R+ ++ E+L I+ ++ D + +YV+Q
Sbjct: 399 QKCLESREFSSRR-IIAELLSDIDS------LLVDPYGDYVIQ 434
Score = 133 (51.9 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 62/285 (21%), Positives = 127/285 (44%)
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
LS D ++++Q G + ++ D L HV L L YG +V +K +E +Q
Sbjct: 156 LSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQ 215
Query: 801 QTQM---VKELDGHIMR-CVRDQNGNHVIQKCIE--CVPEDAIQFIVLTFYDQVVTLSTH 854
T++ V E +R CV +G H IQ + C E +F+ Y V L T
Sbjct: 216 ITRVLDIVLEEPFEFVRLCVHT-HGTHAIQGLMRSLCSEEQISRFMETLCY--VSLLLTK 272
Query: 855 PYGCRVIQRVLEHCHDEKTQS---IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERS 911
+ RV+ C ++ + S +++ I+Q+ +A DQ G +++ ++ R
Sbjct: 273 DV---IAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRD 329
Query: 912 AIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVN--EMLGSIEEN-EPLQVMMK 968
+IK++ V++ + + + L + + E+ ++ ++ + V +
Sbjct: 330 PLIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLS 389
Query: 969 -DQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIV 1012
D++ ++VVQK LE+ + +I + +++L YG +++
Sbjct: 390 YDKYGSHVVQKCLESREFSSRRIIAELLS-DIDSLLVDPYGDYVI 433
>UNIPROTKB|Q15397 [details] [associations]
symbol:KIAA0020 "Pumilio domain-containing protein
KIAA0020" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:CH471071 EMBL:AK292169 EMBL:AL354723 EMBL:AL589675
EMBL:BC016137 EMBL:D13645 EMBL:AF490254 EMBL:CR456957 EMBL:AY047588
EMBL:AY047589 EMBL:AY047590 IPI:IPI00791325 RefSeq:NP_055693.4
UniGene:Hs.493309 ProteinModelPortal:Q15397 IntAct:Q15397
MINT:MINT-1404790 STRING:Q15397 PhosphoSite:Q15397 DMDM:81175177
SWISS-2DPAGE:Q15397 PaxDb:Q15397 PRIDE:Q15397 DNASU:9933
Ensembl:ENST00000397885 GeneID:9933 KEGG:hsa:9933 UCSC:uc003zhp.1
CTD:9933 GeneCards:GC09M002720 HGNC:HGNC:29676 HPA:HPA002353
MIM:609960 neXtProt:NX_Q15397 PharmGKB:PA134895115 eggNOG:NOG273657
HOVERGEN:HBG052166 InParanoid:Q15397 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 ChiTaRS:KIAA0020 GenomeRNAi:9933 NextBio:37470
Bgee:Q15397 CleanEx:HS_KIAA0020 Genevestigator:Q15397
GermOnline:ENSG00000080608 Uniprot:Q15397
Length = 648
Score = 180 (68.4 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 56/263 (21%), Positives = 120/263 (45%)
Query: 705 VEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQ 764
+ F+ D +R IQ ++ E++ F+E+ + L + +++KF +G+ Q
Sbjct: 173 IAFAHDS--TRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQ 230
Query: 765 VRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
+ E+ GHV + +++ A + L+Q+ + +EL G+ + + + +
Sbjct: 231 IAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSAD-HR 289
Query: 824 VIQKCIECVPEDAIQFI------VLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877
+ K +E PE ++ I +LT Q + H +V + K +S M
Sbjct: 290 TLDKVLEVQPEK-LELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYA-PPKLRSEM 347
Query: 878 MDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEK- 936
++ I ++V LA G V H L HG P +R I+K + + +++ +++ V+
Sbjct: 348 IEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAA 407
Query: 937 --CLSFGTPAERQALVNEMLGSI 957
C+ T +Q +++E++ S+
Sbjct: 408 FDCID-DTKLVKQIIISEIISSL 429
>UNIPROTKB|E2RBF2 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:AAEX03000606
EMBL:AAEX03000607 Ensembl:ENSCAFT00000003228 Uniprot:E2RBF2
Length = 648
Score = 178 (67.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 58/262 (22%), Positives = 119/262 (45%)
Query: 705 VEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQ 764
+ F+ D +R IQ ++ E++ F+E+ + L + +++KF +G+ Q
Sbjct: 173 IAFAHDS--TRVIQCYIQYGNEEQREQAFEELRDDFVQLSKAKYSRNIVKKFLMYGSKPQ 230
Query: 765 VRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
+ E+ GHV + +++ A + L+Q+ + +EL G+ + + + +
Sbjct: 231 IAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSAD-HP 289
Query: 824 VIQKCIECVPE--DAIQFI---VLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMM 878
+ K +E PE D I +LT Q + H +V + K +S M+
Sbjct: 290 TLDKVLETQPEKLDLIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYA-PPKLRSEMI 348
Query: 879 DEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEK-- 936
+ I ++V LA G V H L HG P +R I+K + I +++ +++ V+
Sbjct: 349 EAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYIEKVANGQYSHLVLLAAF 408
Query: 937 -CLSFGTPAERQALVNEMLGSI 957
C+ T +Q +++E++ S+
Sbjct: 409 DCID-DTKLVKQIIISEIINSL 429
>UNIPROTKB|A2VDN9 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 CTD:9933
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:DAAA02022736 EMBL:BC133332 EMBL:BT030563 IPI:IPI00693374
RefSeq:NP_001091499.1 UniGene:Bt.24626 STRING:A2VDN9
Ensembl:ENSBTAT00000017765 GeneID:514957 KEGG:bta:514957
InParanoid:A2VDN9 NextBio:20871591 Uniprot:A2VDN9
Length = 647
Score = 176 (67.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 57/263 (21%), Positives = 121/263 (46%)
Query: 705 VEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQ 764
+ F+ D +R IQ ++ E++ F+E+ + L + +++KF +G+ +Q
Sbjct: 172 IAFAHDS--TRVIQCYIQFGNEEQRKQAFEELRGDLVELSKAKYSRNIVKKFLMYGSKAQ 229
Query: 765 VRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
+ E+ GHV L +++ A + L+Q+ + +EL G+ + + + +
Sbjct: 230 IAEIIRSFKGHVRKLLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSAD-HP 288
Query: 824 VIQKCIECVPEDAIQFI------VLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877
+ K +E PE ++ I +LT Q + H +V + K +S M
Sbjct: 289 TLDKVLEVQPEK-LELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYA-PPKLRSEM 346
Query: 878 MDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEK- 936
++ I ++V LA G V + L HG P +R I+K + I +++ +++ V+
Sbjct: 347 IEAIREAVVYLAHTHDGARVAMYCLWHGTPKDRKVIVKTMKTYIEKVANGQYSHLVLLAA 406
Query: 937 --CLSFGTPAERQALVNEMLGSI 957
C+ T +Q +++E++ S+
Sbjct: 407 FDCID-DTKLVKQIIISEIINSL 428
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 51/230 (22%), Positives = 106/230 (46%)
Query: 760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQ 819
GT + L + + ++ G + +QK + + + D + + + + D+
Sbjct: 71 GTLMWMASLMTSDCDYFMVITTNKNGSKTLQKLMGMSD-DMDVFFFEAIMRLFIHVMTDK 129
Query: 820 NGNHVIQKCIECVPEDAIQFIVLTFYDQVVT----LSTHPYGCRVIQRVLEHCHDEKTQS 875
++V + + +D + + YDQ++ L+ YGC + ++ D +
Sbjct: 130 YASYVTIQGMRVFQQDKRELM----YDQILRYACFLAGDQYGCIALNEIITDLDDPYYRD 185
Query: 876 IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIE 935
++D + + +L+ D YGN+VVQHVL+ I KL G V++S +K+ S ++E
Sbjct: 186 QLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVE 245
Query: 936 KCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDD 985
+ L G +V ++L + E L + + ++ N+VV K LE ++
Sbjct: 246 RLLEAGD-VPMATVVLDLLAC--KTEMLIRLARSEYGNFVVCKALELTNE 292
Score = 142 (55.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 54/206 (26%), Positives = 98/206 (47%)
Query: 708 SADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV-IQ--KFFEHGTASQ 764
+ ++ GS+ +Q KL + + F+ IM + +MTD + +YV IQ + F+
Sbjct: 91 TTNKNGSKTLQ-KLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDK--- 146
Query: 765 VRELA-DQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ---QTQMVKELDGHIMRCVRDQN 820
REL DQ+ + L+ YGC + + I +LD + Q++ + + + D
Sbjct: 147 -RELMYDQILRYACFLAGDQYGCIALNEII--TDLDDPYYRDQLLDIVANNALLLSNDAY 203
Query: 821 GNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDE 880
GN V+Q ++ + I V LS YG +++R+LE D ++++D
Sbjct: 204 GNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLE-AGDVPMATVVLDL 262
Query: 881 IL---QSVCMLAQDQYGNYVVQHVLE 903
+ + + LA+ +YGN+VV LE
Sbjct: 263 LACKTEMLIRLARSEYGNFVVCKALE 288
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 35/152 (23%), Positives = 73/152 (48%)
Query: 687 FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKL-ETATTEEKNMVFQEIMPQALSLMT 745
F+ +K + +I + + DQYG + + + + ++ + + AL L
Sbjct: 142 FQQDKRELM-YDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSN 200
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV 805
D +GN+V+Q + + R +AD+L G+ + LS + YG ++++ +E ++ T ++
Sbjct: 201 DAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVL 260
Query: 806 KEL---DGHIMRCVRDQNGNHVIQKCIECVPE 834
L ++R R + GN V+ K +E E
Sbjct: 261 DLLACKTEMLIRLARSEYGNFVVCKALELTNE 292
Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
Identities = 45/219 (20%), Positives = 98/219 (44%)
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQR 863
M + D + M ++NG+ +QK + + +D F + + T Y V +
Sbjct: 80 MTSDCD-YFMVITTNKNGSKTLQKLMG-MSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQ 137
Query: 864 VLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVL-EHGKPHERSAIIKKLTGQIV 922
+ +K + +M D+IL+ C LA DQYG + ++ + P+ R ++ + +
Sbjct: 138 GMRVFQQDKRE-LMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNAL 196
Query: 923 QMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLET 982
+S + + V++ L + + +++ G E + K ++ +Y+V+++LE
Sbjct: 197 LLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVE-----LSFK-KYGSYIVERLLEA 250
Query: 983 CDDQQLELILNRI--KVH-LNALKKYTYGKHIVARVEKL 1018
D ++L+ + K L L + YG +V + +L
Sbjct: 251 GDVPMATVVLDLLACKTEMLIRLARSEYGNFVVCKALEL 289
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 168 (64.2 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 63/291 (21%), Positives = 130/291 (44%)
Query: 666 PWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAG-------HVVEFSADQYGSRFIQ 718
P H+ + + S E SN K EL +A + + ++GSR +Q
Sbjct: 40 PLHAALFNLMTDGDGVSYFKEMISNSDKT-ELQRMASLLTSDSDYFMSIVTTKFGSRRVQ 98
Query: 719 QKLETATTEEKNMVF-QEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVL 777
+ L +++ + F I+ + L + TD + +YV + + L +++ H L
Sbjct: 99 KLL--GKSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHAL 156
Query: 778 TLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDA 836
L+ +GC + I + + + Q+++ + + +R D +GN V+Q +
Sbjct: 157 DLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRC 216
Query: 837 IQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL----QSVCMLAQDQ 892
I I + Y Q + LS YG +++++LE E++ +++ E+L + LA+++
Sbjct: 217 IHNIAVNLYGQCIELSFKKYGSYIVEKLLEV---EESMVVVVVELLGCDGDRLMRLARNE 273
Query: 893 YGNYVVQHVLEHGKPHERS---AIIKKLTGQIVQMSQQKFASNVIEKCLSF 940
+GN+VV L K +++KL +++ ++ SN+ SF
Sbjct: 274 FGNFVVVKALRFTKMSRMDLFWGLVQKLM-PFIRLLRRSHGSNIANILDSF 323
Score = 160 (61.4 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 54/276 (19%), Positives = 124/276 (44%)
Query: 742 SLMTDVFGNYVIQKFFEHGTASQVRELADQLTG---HVLTLSLQMYGCRVIQKAIEVVEL 798
+LMTD G ++ + ++++ +A LT + +++ +G R +QK + +
Sbjct: 47 NLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD- 105
Query: 799 DQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
D + + D+ ++V + + + + + + L+ +GC
Sbjct: 106 DVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGC 165
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
+ ++ D + +++ + + L+ D GN+VVQHVL I L
Sbjct: 166 IALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLY 225
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQK 978
GQ +++S +K+ S ++EK L +V E+LG + + L + +++F N+VV K
Sbjct: 226 GQCIELSFKKYGSYIVEKLLE--VEESMVVVVVELLGC--DGDRLMRLARNEFGNFVVVK 281
Query: 979 VLETCDDQQLEL---ILNRIKVHLNALKKYTYGKHI 1011
L +++L ++ ++ + L++ ++G +I
Sbjct: 282 ALRFTKMSRMDLFWGLVQKLMPFIRLLRR-SHGSNI 316
>WB|WBGene00004240 [details] [associations]
symbol:puf-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000016078 EMBL:FO081656 PIR:T33752 RefSeq:NP_500301.1
UniGene:Cel.28747 ProteinModelPortal:Q8I723 SMR:Q8I723
EnsemblMetazoa:M4.2 GeneID:191754 KEGG:cel:CELE_M4.2 UCSC:M4.2
CTD:191754 WormBase:M4.2 InParanoid:Q8I723 NextBio:950224
Uniprot:Q8I723
Length = 420
Score = 176 (67.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 63/196 (32%), Positives = 102/196 (52%)
Query: 754 QKFFEHGTASQVRELADQ---LTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELD 809
QK FE A +V L DQ + G+ + QK I E + + +++ EL
Sbjct: 186 QKIFEQLVADRVIFL-DQCKHMFGNFFVQRVLECSDAEEQKIIVEYLAIVLASRLASELR 244
Query: 810 GHIMR--CVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQV--VTLSTHPYGCRVIQRVL 865
G + C+ DQNGNHVIQ+ ++ +P + QF+V F V + Y CRVIQ L
Sbjct: 245 GVDLTHACI-DQNGNHVIQQLLKTLPPSSWQFLVEFFSRDTNFVEVCEDKYVCRVIQSTL 303
Query: 866 EHCHD-EKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE---RSAIIKK-LT 918
E E+ ++ ++ I+++ LA +++ NYVV+HV++ R II+K L
Sbjct: 304 ETLSKREQLVALRRLVGVIIRNCGQLASNEFANYVVRHVIKCDDAEMTIYRDVIIEKCLL 363
Query: 919 GQIVQMSQQKFASNVI 934
++ MSQ+K+AS++I
Sbjct: 364 QNLLSMSQEKYASHMI 379
Score = 38 (18.4 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 421 KSALSSSNSYLKGPCTPTLNGGGNSPS 447
KS +++ SY + P TP ++PS
Sbjct: 66 KSNKATATSYHQRPDTPRYQQRASTPS 92
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 166 (63.5 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 54/276 (19%), Positives = 126/276 (45%)
Query: 742 SLMTDVFGNYVIQKFFEHGTASQVRELADQLTG---HVLTLSLQMYGCRVIQKAIEVVEL 798
+LMTD G ++ ++++ +A LT + +++ +G R +QK + +
Sbjct: 47 NLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD- 105
Query: 799 DQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGC 858
D + + D+ ++V + + + + + + L+ +GC
Sbjct: 106 DVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGC 165
Query: 859 RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
+ ++ D + +++ ++ + L+ D GN+VVQHVL I L
Sbjct: 166 IALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLY 225
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQK 978
GQ +++S +K+ S ++EK L +V E+LG + + L + +++F N+VV K
Sbjct: 226 GQCIELSFKKYGSYIVEKLLE--VEESMVVVVVELLGC--DGDRLMRLARNEFGNFVVVK 281
Query: 979 VLETCDDQQLEL---ILNRIKVHLNALKKYTYGKHI 1011
L + +++L ++ ++ ++ L++ ++G +I
Sbjct: 282 ALRFTKEMRMDLFWGLVQKLMPFIHLLRR-SHGNNI 316
Score = 166 (63.5 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 61/296 (20%), Positives = 134/296 (45%)
Query: 653 PSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEF--KSNKTKCFELSEI----AGHVVE 706
PSG + P H+ + + S E KS+KT+ ++ + + + +
Sbjct: 29 PSGFAPRASAT--PLHAALFNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMS 86
Query: 707 FSADQYGSRFIQQKLETATTEEKNMVF-QEIMPQALSLMTDVFGNYVIQKFFEHGTASQV 765
++GSR +Q+ L +++ + F I+ + L + TD + +YV +
Sbjct: 87 IVTTKFGSRRVQKLL--GKSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMK 144
Query: 766 RELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNHV 824
+ L +++ H L L+ +GC + I + + + Q+++ + + +R D +GN V
Sbjct: 145 KALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFV 204
Query: 825 IQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL-- 882
+Q + I I + Y Q + LS YG +++++LE E++ +++ E+L
Sbjct: 205 VQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEV---EESMVVVVVELLGC 261
Query: 883 --QSVCMLAQDQYGNYVVQHVLEHGKPHERS---AIIKKLTGQIVQMSQQKFASNV 933
+ LA++++GN+VV L K +++KL + + ++ +N+
Sbjct: 262 DGDRLMRLARNEFGNFVVVKALRFTKEMRMDLFWGLVQKLM-PFIHLLRRSHGNNI 316
>MGI|MGI:106253 [details] [associations]
symbol:D19Bwg1357e "DNA segment, Chr 19, Brigham & Women's
Genetics 1357 expressed" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:106253 GO:GO:0005783
SUPFAM:SSF48371 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844
OMA:RKDCDKE OrthoDB:EOG4X3H13 EMBL:AK050829 EMBL:AK088081
EMBL:AK141893 EMBL:AK172872 IPI:IPI00222675 RefSeq:NP_803425.1
UniGene:Mm.261027 ProteinModelPortal:Q8BKS9 STRING:Q8BKS9
PhosphoSite:Q8BKS9 PaxDb:Q8BKS9 PRIDE:Q8BKS9
Ensembl:ENSMUST00000076219 GeneID:52874 KEGG:mmu:52874
UCSC:uc008hby.1 CTD:52874 GeneTree:ENSGT00390000015757
HOGENOM:HOG000237322 InParanoid:Q8BKS9 NextBio:309667 Bgee:Q8BKS9
Genevestigator:Q8BKS9 GermOnline:ENSMUSG00000041360 Uniprot:Q8BKS9
Length = 647
Score = 172 (65.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 56/263 (21%), Positives = 119/263 (45%)
Query: 705 VEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQ 764
+ F+ D +R IQ ++ E++ FQE+ + L + +++KF +G+ Q
Sbjct: 172 IAFAHDS--TRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQ 229
Query: 765 VRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
V E+ GHV + +++ A + L+Q+ + +EL G+ + + + +
Sbjct: 230 VAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSAD-HP 288
Query: 824 VIQKCIECVPEDAIQFI------VLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877
+ K +E P ++ I +LT Q + H +V + K +S +
Sbjct: 289 TLDKVLELQPAK-LELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYA-PPKPRSEL 346
Query: 878 MDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEK- 936
++ I ++V LA G V H L HG P +R I+K + + +++ +++ V+
Sbjct: 347 IEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAA 406
Query: 937 --CLSFGTPAERQALVNEMLGSI 957
C+ T +Q +++E++ S+
Sbjct: 407 FDCID-DTKLVKQIIISEIISSL 428
Score = 171 (65.3 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 64/279 (22%), Positives = 128/279 (45%)
Query: 752 VIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGH 811
VIQ F ++G Q ++ +L G ++ LS Y +++K + Q ++++ GH
Sbjct: 181 VIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGH 240
Query: 812 IMRCVRDQNGNHVIQKCIECVPEDAI--QFIVLT--FYDQVVTL---STHPYGCRVIQRV 864
+ + +R + +++ + AI Q +LT Y L + HP + +V
Sbjct: 241 VRKMLRHSEASAIVEYAYN---DKAILEQRNMLTEELYGNTFQLYKSADHP----TLDKV 293
Query: 865 LEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEH---------GKPHERSAIIK 915
LE K + ++MDE+ Q + +AQ + V++H L H P RS +I+
Sbjct: 294 LE-LQPAKLE-LIMDEMKQILTPMAQKEA---VIKHSLVHKVFLDFFTYAPPKPRSELIE 348
Query: 916 KLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYV 975
+ +V ++ + V CL GTP +R+ +V M +E+ + Q+++ V
Sbjct: 349 AIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEK------VANGQYSHLV 402
Query: 976 VQKVLETCDDQQL--ELILNRIKVHLNALKKYTYGKHIV 1012
+ + DD +L ++I++ I L ++ YG+ ++
Sbjct: 403 LLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVL 441
Score = 44 (20.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 975 VVQKVLETCDDQQLELILNRIKVHLNALKKY-TYGKHIVARVEKLVA 1020
++ +L++CD + + + +K + L+K + + I +EKL A
Sbjct: 601 ILSSLLQSCDQEVVNKVKGGLKPLIPTLEKNKSSSRGIQTLLEKLTA 647
>RGD|1564753 [details] [associations]
symbol:LOC499339 "hypothetical protein LOC499339" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1564753 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:BC092579 EMBL:BC098744 IPI:IPI00563669 RefSeq:NP_001020207.1
UniGene:Rn.127943 UniGene:Rn.52964 ProteinModelPortal:Q562C7
STRING:Q562C7 PhosphoSite:Q562C7 PRIDE:Q562C7
Ensembl:ENSRNOT00000033724 GeneID:499339 KEGG:rno:499339
InParanoid:Q562C7 NextBio:702600 Genevestigator:Q562C7
GermOnline:ENSRNOG00000012574 Uniprot:Q562C7
Length = 647
Score = 171 (65.3 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 54/263 (20%), Positives = 121/263 (46%)
Query: 705 VEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQ 764
+ F+ D +R IQ ++ + E++ F+E+ + L + +++KF +G+ Q
Sbjct: 172 IAFAHDS--TRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQ 229
Query: 765 VRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVRDQNGNH 823
+ E+ GHV + +++ A + L+Q+ + +EL G+ + + + +
Sbjct: 230 IAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSAD-HP 288
Query: 824 VIQKCIECVPEDAIQFI------VLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877
++K +E P ++ I +LT Q + H +V + K +S +
Sbjct: 289 TLEKVLEVQP-GKLELILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYA-PPKLRSEL 346
Query: 878 MDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEK- 936
++ I ++V LA G V H L HG P +R I+K + + +++ +++ V+
Sbjct: 347 IEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKIANGQYSHLVLLAA 406
Query: 937 --CLSFGTPAERQALVNEMLGSI 957
C+ T +Q +++E++ S+
Sbjct: 407 FDCID-DTKLVKQIIISEVISSL 428
Score = 46 (21.3 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 975 VVQKVLETCDDQQLELILNRIKVHLNALKKY-TYGKHIVARVEKLVA 1020
V+ +L++CD + + +K + L+K + K I +EKL A
Sbjct: 601 VLSSLLQSCDQDVVNKVKAGLKTLIPTLEKTKSTSKGIQTLLEKLTA 647
>SGD|S000003851 [details] [associations]
symbol:JSN1 "Member of the Puf family of RNA-binding
proteins" species:4932 "Saccharomyces cerevisiae" [GO:0051654
"establishment of mitochondrion localization" evidence=IMP]
[GO:0034629 "cellular protein complex localization" evidence=IMP]
[GO:0032473 "external side of mitochondrial outer membrane"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000003851
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006943
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:L47993
GO:GO:0051654 GO:GO:0000288 EMBL:Z49591 eggNOG:COG5099
GO:GO:0034629 EMBL:L43493 PIR:S57112 RefSeq:NP_012624.1
ProteinModelPortal:P47135 SMR:P47135 DIP:DIP-1281N IntAct:P47135
MINT:MINT-405099 STRING:P47135 PaxDb:P47135 PeptideAtlas:P47135
EnsemblFungi:YJR091C GeneID:853553 KEGG:sce:YJR091C CYGD:YJR091c
GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136 OMA:CLEAHDI
OrthoDB:EOG4MWCFG NextBio:974290 Genevestigator:P47135
GermOnline:YJR091C GO:GO:0032473 Uniprot:P47135
Length = 1091
Score = 178 (67.7 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 58/226 (25%), Positives = 110/226 (48%)
Query: 743 LMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLT-LSLQMYGCRVIQKAIEVVELDQQ 801
L +D GN ++QK FEH ++ ++++ + T LT + + G QK I + +Q
Sbjct: 625 LSSDYLGNTIVQKLFEH-SSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQ 683
Query: 802 TQMVKE-LDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
V + + + + DQ GN+VIQ C+ QFI + + + YG R
Sbjct: 684 IMQVTQGVKDYCTPLINDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQNRYGARA 742
Query: 861 IQRVLEHCHDEKT--QSIMMDEILQSVC-MLAQDQYGNYVVQHVLEHGK-PHERSAIIKK 916
++ LE HD T QSI++ ++ + L+ + G +V L+ P+ S + +
Sbjct: 743 VRACLE-AHDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPR 801
Query: 917 LTGQIVQMSQQKFASNVIEKCLSF-GTPAERQALVNEMLGSIEENE 961
LT +IV++ + AS I K L++ G R+ +++ + G++ ++
Sbjct: 802 LTKRIVELCGHRLASLTILKVLNYRGDDNARKIILDSLFGNVNAHD 847
Score = 132 (51.5 bits), Expect = 0.00015, P = 0.00015
Identities = 58/249 (23%), Positives = 109/249 (43%)
Query: 721 LETATTEEKNMVFQEIMPQALSLMTDVFG-NYVIQKFFEHGTASQVRE---LADQLTGHV 776
L EK + +EI+ + +D + N +I+K H S + L + L+G
Sbjct: 530 LPPPNVNEKEDLLREII-ELFEANSDEYQINSLIKKSLNHKGTSDTQNFGPLPEPLSGRE 588
Query: 777 LTL-SLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED 835
L+ + A +E++Q + LD + D GN ++QK E D
Sbjct: 589 FDPPKLRELRKSIDSNAFSDLEIEQLA--IAMLD-ELPELSSDYLGNTIVQKLFEH-SSD 644
Query: 836 AIQFIVLTFYDQVVT-LSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCM-LAQDQY 893
I+ I+L + +T + H G Q+++ H + Q + + + ++ C L DQ+
Sbjct: 645 IIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPR-QIMQVTQGVKDYCTPLINDQF 703
Query: 894 GNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLS---FGTPAERQALV 950
GNYV+Q VL+ G P + I + + + Q ++ + + CL TP E+ ++
Sbjct: 704 GNYVIQCVLKFGFPWNQF-IFESIIANFWVIVQNRYGARAVRACLEAHDIVTP-EQSIVL 761
Query: 951 NEMLGSIEE 959
+ M+ + E
Sbjct: 762 SAMIVTYAE 770
Score = 42 (19.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 723 TATTEEKNMVFQEIMPQALSLMT 745
T T+E ++ EI PQ+++ +T
Sbjct: 300 TIPTQESPLIADEIDPQSINWVT 322
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 159 (61.0 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 48/207 (23%), Positives = 97/207 (46%)
Query: 808 LDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEH 867
+D + + D+ G +I I V + + + Y+ + L+ GC + VL+
Sbjct: 294 VDTNFFLLMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQE 353
Query: 868 CHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQ 927
+ ++ + + + L+ D YG +VVQ++L P +AI ++L G +++ +
Sbjct: 354 IRGIY-RDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAME 412
Query: 928 KFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQ 987
+ S V+EKCL + R ++ E G+ +E M D+F N+VVQ L +++
Sbjct: 413 RQGSYVVEKCLK--SDFARDQVLEEFRGNAKE---WVRMTTDKFGNFVVQSALRVMKEKE 467
Query: 988 LELILNRIKVHLNALKKYTYGKHIVAR 1014
+ +L + L+ + +GK + R
Sbjct: 468 MRPLLREF---VEKLRPH-FGKMEIGR 490
>UNIPROTKB|H0YDQ6 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957 ChiTaRS:PUM1
Ensembl:ENST00000530669 Bgee:H0YDQ6 Uniprot:H0YDQ6
Length = 76
Score = 135 (52.6 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 839 FIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQ 890
FI+ F QV LSTHPYGCRVIQR+LEHC ++T I+ +E+ Q L Q
Sbjct: 1 FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL-EELHQHTEQLVQ 51
>TAIR|locus:2086760 [details] [associations]
symbol:PUM24 "pumilio 24" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB028608 eggNOG:NOG273657 KO:K14844 EMBL:AY045638
IPI:IPI00521400 RefSeq:NP_566559.1 UniGene:At.5720
ProteinModelPortal:Q9LRZ3 SMR:Q9LRZ3 STRING:Q9LRZ3 PaxDb:Q9LRZ3
PRIDE:Q9LRZ3 EnsemblPlants:AT3G16810.1 GeneID:820934
KEGG:ath:AT3G16810 TAIR:At3g16810 HOGENOM:HOG000070534
InParanoid:Q9LRZ3 OMA:IKHGSAK PhylomeDB:Q9LRZ3
ProtClustDB:CLSN2688458 Genevestigator:Q9LRZ3 Uniprot:Q9LRZ3
Length = 641
Score = 158 (60.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 56/284 (19%), Positives = 128/284 (45%)
Query: 688 KSNKTKCFE--LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMT 745
K +++K + ++ G V E + SR +Q ++ + EK+++F E+ PQ L+L +
Sbjct: 105 KEDRSKLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLAS 164
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMV 805
+ + + IQK + + Q+ L GHV L ++G V++ A + Q+ +++
Sbjct: 165 NKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELL 224
Query: 806 KEL---DGHIMRCVRDQNGNHVIQKCIEC-VPEDAIQFIVLTFYDQVVT--LSTHPYGCR 859
EL + + + + N V+ + + + A+ + ++ + H +
Sbjct: 225 AELYSTELQLFKGLTTSNEKTVVDIIAKLGLQKGAVNRHMTAIIQPILEKGIVDHTITHK 284
Query: 860 VIQRVLEHCHDEKTQSIMMDEILQSVCML--AQDQYGNYVVQHVLEHGKPHERSAIIKKL 917
++ L +KT + + ++L +L + G+ + ++HG ER IIK +
Sbjct: 285 LLIEYLTIA--DKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKERKKIIKAM 342
Query: 918 TGQIVQMSQQKFASNVIEKCLSF--GTPAERQALVNEMLGSIEE 959
+ +M+ +F S V+ S T + +V E+ ++++
Sbjct: 343 KEHVKKMAFDQFGSMVLACIFSIVDDTKLVTKIIVRELEATLKD 386
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 155 (59.6 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 60/256 (23%), Positives = 113/256 (44%)
Query: 727 EEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVR-ELADQLTGHVLTLSLQMYG 785
EE + + +P+ L D GN ++QK F +S V+ + ++ ++ L + G
Sbjct: 7 EELCLAMLDELPE---LSYDYLGNTIVQKLFTLVESSLVKLMMVKEVAPYLTQLGIHKNG 63
Query: 786 CRVIQKAIEVVELD-QQTQMV-KELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLT 843
IQK I + D QQ ++ L + ++ DQ GN+VIQ CI+ F+
Sbjct: 64 TWAIQKIINLCHSDYQQMYLIGASLKPYAVKLFNDQFGNYVIQGCIK-FGSPFNDFVFEA 122
Query: 844 FYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDE--------ILQSVCMLAQDQYGN 895
D + +S +G R I+ +LE CHD + S + +E I++ LA + G+
Sbjct: 123 MLDNFLEISVGRFGARCIRTILESCHDSSSTSPVTNEQVLLVAGLIIEFANELAVNSNGS 182
Query: 896 YVVQHVLEHGKPHERSA--IIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEM 953
++ L+ K + ++ K I + K A+ + K L+ + ++ V M
Sbjct: 183 LLITWYLDTFKDCDSKIELLMSKFLPNIRALCVHKLANLTVLKILN--NRIDDKSRVATM 240
Query: 954 LGSIEENEPLQVMMKD 969
E L+ ++++
Sbjct: 241 DAIFNNKETLEYILQE 256
>DICTYBASE|DDB_G0288551 [details] [associations]
symbol:DDB_G0288551 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
dictyBase:DDB_G0288551 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 KO:K14844
EMBL:AAFI02000116 RefSeq:XP_636672.1 ProteinModelPortal:Q54IS5
STRING:Q54IS5 EnsemblProtists:DDB0238675 GeneID:8626685
KEGG:ddi:DDB_G0288551 OMA:LLRNDHI ProtClustDB:CLSZ2429870
Uniprot:Q54IS5
Length = 679
Score = 154 (59.3 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 50/272 (18%), Positives = 119/272 (43%)
Query: 699 EIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFE 758
++ G+V+ SR +Q L+ ++ +VF+E+ Q L++ +G ++I K +
Sbjct: 140 KLKGNVLNVIVKHDASRVVQTLLKYGNEAQREIVFKELKDQELTISKTQYGRFLILKLLK 199
Query: 759 HGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQMVKELDGHIMRCVR 817
+GT Q + Q G +++ V++ E+ Q+T +++E G R +
Sbjct: 200 YGTEEQRNTIIKQFYGKFVSMISHKESSSVVEYIFSEIASKLQKTHIIEEFYGPEYRLFK 259
Query: 818 DQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQ-RVLEHC------HD 870
+ + +E P+ ++T+ +T G R++Q +++ H
Sbjct: 260 TEQPR-TLDSIVESSPQKKEP--IITYLSSQLTKILSSKGERLVQFTIIQTLLIEFFKHA 316
Query: 871 EKTQSIMMDEILQSVCM-LAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKF 929
+ M E L + + + + G+ V +V+ + P R +I+K L I +++ +++
Sbjct: 317 SPDNCVDMSETLGELLLPMIHSKEGSQVAYYVISYATPKTRKSIVKSLKDFIPKIASEEY 376
Query: 930 ASNVIEKCLSFGTPAER--QALVNEMLGSIEE 959
+ + L + +++ NE++ + E
Sbjct: 377 GFLALVRLLDVTDDTQMIIKSVFNELIPVLPE 408
Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 930 ASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLE 989
A N E+ LS T +++VN E ++ + + + N++ K++E C + +
Sbjct: 428 AQNFTEQTLSLLT----KSMVNSCGIQHEISKKDRDQRRKELLNWISPKLIELCSNHTQD 483
Query: 990 LILNR--IKVHLNALKKYTYGKHIV 1012
L+ ++ KV LN K G I+
Sbjct: 484 LLSSQWGTKV-LNQTLKNADGNKII 507
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 334 NLSTDGVADQENNSRSQNQ 352
N +T D+EN S N+
Sbjct: 64 NTTTTTTTDKENESNKSNE 82
>POMBASE|SPCP1E11.11 [details] [associations]
symbol:puf6 "Puf family RNA-binding protein Puf6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISO] [GO:2000766 "negative regulation of cytoplasmic
translation" evidence=ISO] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPCP1E11.11 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:2000766 eggNOG:NOG273657 KO:K14844 PIR:T41690
RefSeq:NP_588564.1 ProteinModelPortal:Q9UU76 STRING:Q9UU76
PRIDE:Q9UU76 EnsemblFungi:SPCP1E11.11.1 GeneID:2538833
KEGG:spo:SPCP1E11.11 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF NextBio:20800015 Uniprot:Q9UU76
Length = 642
Score = 140 (54.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 68/353 (19%), Positives = 150/353 (42%)
Query: 685 DEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLM 744
+E K+ + F+L + F D SR +Q ++ + +++ + E+ + L
Sbjct: 149 EERKTIIAELFDLIRTNVKQLVFKHDM--SRVVQTCVKFGSKQQRETICAELAGSYVDLC 206
Query: 745 TDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQ 803
+G Y+ K F++GT + ++ G+V+ + V++ A E L QQ
Sbjct: 207 KSPYGKYLAIKIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRA 266
Query: 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVV-TLSTHPYGCRVIQ 862
++ E G + +D+ + I K + PE I+ + + +++ G ++
Sbjct: 267 LICEFYGPEFQVFKDRTQDIHIDKLLIDHPEKRPS-IMQNLWKTIEGSIAKGSIGFTMVH 325
Query: 863 R-VLEHCH--DEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG 919
R +LE + D +++ + + + G+ V + +R ++K L
Sbjct: 326 RAMLEFINHADSNEAKELLNLTKELIYEFVHTRDGSQVAMKLFALANAKDRKVMLKSLRP 385
Query: 920 QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKV 979
+++ ++ + V+ L + + ++L + E E L+ + D+FA ++ V
Sbjct: 386 YLIETAKDSYGHLVVVAALDC---TDDTIMTGKLLQAEFEGELLK-LSADKFARRILLYV 441
Query: 980 LETCDDQQLELILNRIKVH-LNALKKYTYGKHIVARVEKLVAA-GERRISIMT 1030
L +D + NR + L++LK T K + R +L A G IS+++
Sbjct: 442 LVGWEDARYFSKENRELLRSLDSLKAKTSKKDPIVRRNELKATIGPLLISLIS 494
>WB|WBGene00014165 [details] [associations]
symbol:puf-12 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0018991 "oviposition"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0018991 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 KO:K14844
GeneTree:ENSGT00390000015757 EMBL:Z48544 PIR:T28120
RefSeq:NP_496178.1 ProteinModelPortal:Q09622 SMR:Q09622
STRING:Q09622 PaxDb:Q09622 EnsemblMetazoa:ZK945.3.1
EnsemblMetazoa:ZK945.3.2 GeneID:174572 KEGG:cel:CELE_ZK945.3
CTD:174572 WormBase:ZK945.3 HOGENOM:HOG000020011 InParanoid:Q09622
OMA:TSRVIEC NextBio:884608 Uniprot:Q09622
Length = 766
Score = 137 (53.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 58/311 (18%), Positives = 132/311 (42%)
Query: 688 KSNK-TKCFEL-SEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMT 745
K+ K T EL + GH + SR I+ + T N +F E+ P+ + +
Sbjct: 264 KAEKDTAVHELYGLVKGHAAKLIYAHDTSRVIECLVATEREGIINNLFNELTPEIVRMSK 323
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI-EVVELDQQTQM 804
+V+ + ++K ++GT Q + + GH TL + V++ A + Q+ +
Sbjct: 324 NVYSKFFVKKMLKNGTKEQRDIIINAFRGHAPTLLRIKHAAEVLEYAYNDFANAHQRYNI 383
Query: 805 VKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR--VIQ 862
+ E G R+ N + + E PE + ++L D+V+ R ++
Sbjct: 384 ITEFYGKEFILFREDNIRSLTEILAE-KPEKKV--VILKHLDEVIGAVNEKETLRLSILH 440
Query: 863 RVL----EHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918
+++ ++C +EK +++ D + + G + ++ ER I+K
Sbjct: 441 KLMLDFFDNCDEEKKINLL-DSLKDKIPEFIHTPDGAKLAIKLIWFAPVKERKLIVKNFK 499
Query: 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQK 978
V+ + + + V+ L+ + L+N+++ S NE ++ +++D + V+
Sbjct: 500 DLSVKAAMEHYGHRVL---LALFDTVDDTVLLNKVIVSELANE-MKKLIEDDWGEKVIHY 555
Query: 979 VLETCDDQQLE 989
++ D + ++
Sbjct: 556 LVHPRDGRGID 566
>UNIPROTKB|F1NWW8 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00681111 Ensembl:ENSGALT00000034677
ArrayExpress:F1NWW8 Uniprot:F1NWW8
Length = 613
Score = 131 (51.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 51/227 (22%), Positives = 98/227 (43%)
Query: 752 VIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGH 811
VIQ F ++G Q +E ++L ++ LS Y +++K + Q +++K GH
Sbjct: 174 VIQCFIQYGNDKQRQETFEELKDSLVELSKSKYSRNIVKKFLMYGTKQQIAEIIKSFKGH 233
Query: 812 IMRCVRDQNGNHVIQKCI--ECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH 869
+ + +R + V++ + + E + Y + P + +VLE
Sbjct: 234 VKKMLRHAEASAVVEYAYNDKAILEQR-NMLTEELYGNTFQVYKTPI-VPTLDKVLE-AQ 290
Query: 870 DEKTQSIM--MDEIL--------------QSVCMLAQDQYGNYVVQHVLEHGKPHERSAI 913
EK ++I+ M +IL ++V LA G V H L HG P +R I
Sbjct: 291 PEKREAILDEMKQILTPMAQNAEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVI 350
Query: 914 IKKLTGQIVQMSQQKFASNVIEK---CLSFGTPAERQALVNEMLGSI 957
+K + I +++ +F+ V+ C+ T +Q ++ E+ S+
Sbjct: 351 VKTMKTYIEKIATGEFSHLVLLAAFDCID-DTKLVKQLIITELNASL 396
>CGD|CAL0005913 [details] [associations]
symbol:orf19.3547 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0005913 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000094
EMBL:AACQ01000093 eggNOG:NOG273657 KO:K14844 HOGENOM:HOG000246618
RefSeq:XP_714906.1 RefSeq:XP_714969.1 ProteinModelPortal:Q59ZH2
STRING:Q59ZH2 GeneID:3643365 GeneID:3643461 KEGG:cal:CaO19.11031
KEGG:cal:CaO19.3547 Uniprot:Q59ZH2
Length = 667
Score = 131 (51.2 bits), Expect = 0.00011, P = 0.00011
Identities = 62/312 (19%), Positives = 136/312 (43%)
Query: 688 KSNKTK-CFELSEIAGHVVEFSADQY-GSRFIQQKLETATTEEKNMVFQEIMPQALSLMT 745
K+ + K C E+ E++ V+ ++ SR +Q ++ ++ E ++++ + L T
Sbjct: 148 KAQRDKLCDEVWELSHDVINDLVMKHDASRVVQTLVKYSSKERRDIIVNSLKGSFYQLAT 207
Query: 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVEL-DQQTQM 804
+G Y++ K +G+ + D+L G + L G V++ + +Q+ QM
Sbjct: 208 SAYGKYLLIKLLHYGSKESRAIIVDELHGKLRKLMRHKEGAYVVEDLYVLYSTSEQRQQM 267
Query: 805 VKELDGHIMRCVRDQN-GNHVIQKCIECVPEDAIQFIVLTFYDQV-VTLSTHPYGCRVIQ 862
++E G RD G V+ E + Q I+ Y + ++ G +++
Sbjct: 268 IREFWGSQYAVFRDSGKGKTVLDITRESAEKK--QLIMSNLYGTIKASVEKGSTGFQILH 325
Query: 863 R-------VLEHCHDEKTQSI--MMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAI 913
VL+ D +I +D + + L Q G+ V +++ ER I
Sbjct: 326 AAMKEYVTVLKDDIDANDSAIRDFIDLLGEQFAELVHTQEGSDVACNLIALANAKERKVI 385
Query: 914 IKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGS-IEENEPLQVMMKDQFA 972
I+ L ++ + ++ N++ L F T + L+++ G+ I +E + +++D+F+
Sbjct: 386 IRGLKTHTNELIKNEYG-NIVLITL-FMT-VDDTVLISKSFGAEIFTSELVPQLIQDKFS 442
Query: 973 NYVVQKVLETCD 984
+ +L+ D
Sbjct: 443 RRPILYLLKGLD 454
>SGD|S000006246 [details] [associations]
symbol:PUF2 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000006246
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:Z71255
EMBL:BK006949 EMBL:Z49219 GO:GO:0000288 EMBL:Z68111 eggNOG:COG5099
EMBL:Z73616 GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136
OrthoDB:EOG4MWCFG PIR:S54067 RefSeq:NP_015367.1
ProteinModelPortal:Q12221 SMR:Q12221 IntAct:Q12221
MINT:MINT-4505998 STRING:Q12221 PaxDb:Q12221 EnsemblFungi:YPR042C
GeneID:856155 KEGG:sce:YPR042C CYGD:YPR042c NextBio:981289
Genevestigator:Q12221 GermOnline:YPR042C Uniprot:Q12221
Length = 1075
Score = 139 (54.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 109/499 (21%), Positives = 199/499 (39%)
Query: 501 GNGLDARTLASLGLG----PNVMAAAAELQSMN--RLGNHTAGSALQAPLMDPLYLQYLR 554
G L ARTL L + V +A L+++ L A S + + P+Y Q L
Sbjct: 352 GKVLSARTLRGLNMALVEFSTVESAICALEALQGKELSKVGAPSTVSFARVLPMYEQPLN 411
Query: 555 SNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNL 614
N + L ++ G L Q++ L Q + + P L N
Sbjct: 412 VNGFNNTPKQPLLQEQLNHGVLNYQL---QQSLQQPELQQQPTSFNQPNLTYCNPTQNLS 468
Query: 615 YGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGS 674
+ + YP PL P S S + H + + L+ + ++ G
Sbjct: 469 HLQLSSNENEPYPF-PLPPPSLSDSKKDILHTISSFKLEYDHLELNHLLQNALKNK--GV 525
Query: 675 LDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQ 734
D ++ L E S K + + A + E +F L T E+ +V
Sbjct: 526 SDTNYFGPL-PEHNSKVPKRKDTFD-APKLRELR-----KQFDSNSLSTIEMEQLAIVML 578
Query: 735 EIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLT-LSLQMYGCRVIQKAI 793
+ +P+ L +D GN VIQK FE+ +++ +R++ + LT + + G V QK I
Sbjct: 579 DQLPE---LSSDYLGNTVIQKLFEN-SSNIIRDIMLRKCNKYLTSMGVHKNGTWVCQKII 634
Query: 794 EVVELDQQTQMVKE-LDGHIMRCVRDQNGNHVIQKCIEC-VPEDAIQFIVLTFYDQVVTL 851
++ +Q +V + + DQ GN+VIQ ++ P ++ FI + T+
Sbjct: 635 KMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGFPWNS--FIFESVLSHFWTI 692
Query: 852 STHPYGCRVIQRVLE-HCHDEKTQSIMMDEILQSVC-MLAQDQYGNYVVQHVLEHGK-PH 908
+ YG R ++ LE + Q + + ++ + LA D G ++ +L+ P+
Sbjct: 693 VQNRYGSRAVRACLEADSIITQCQLLTITSLIIVLSPYLATDTNGTLLITWLLDTCTLPN 752
Query: 909 ERSAIIKKLTGQ-IVQMSQQKFASNVIEKCLSFGTPAERQALVNEML-----GSIEENEP 962
+ + KL + +V++ K S + K L+ E N+++ G I +
Sbjct: 753 KNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLRGGEEEALSKNKIIHAIFDGPISSDSI 812
Query: 963 L-QVMMKDQFANYVVQKVL 980
L Q++ + + + KVL
Sbjct: 813 LFQILDEGNYGPTFIYKVL 831
Score = 133 (51.9 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 55/239 (23%), Positives = 105/239 (43%)
Query: 792 AIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVT- 850
++ +E++Q ++ LD + D GN VIQK E + I+ I+L ++ +T
Sbjct: 564 SLSTIEMEQLAIVM--LD-QLPELSSDYLGNTVIQKLFEN-SSNIIRDIMLRKCNKYLTS 619
Query: 851 LSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHER 910
+ H G V Q++++ + + +++ + L DQ+GNYV+Q +L+ G P
Sbjct: 620 MGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGFPWN- 678
Query: 911 SAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQ 970
S I + + + Q ++ S + CL + + L+ + I P + D
Sbjct: 679 SFIFESVLSHFWTIVQNRYGSRAVRACLEADSIITQCQLLT-ITSLIIVLSPY--LATDT 735
Query: 971 FANYVVQKVLETCDDQQLELILNRIKVHLNALKK--YTYGKHIVARVEKLVAAGERRIS 1027
++ +L+TC LIL V+ N +K + G V ++ L E +S
Sbjct: 736 NGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLRGGEEEALS 794
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 28 QKQQQHLQEATQVNSASAADL 48
Q QQH Q A + S S A L
Sbjct: 327 QPTQQHQQNAVNLTSTSLATL 347
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1034 924 0.00091 122 3 11 23 0.44 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 100
No. of states in DFA: 614 (65 KB)
Total size of DFA: 396 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 90.66u 0.12s 90.78t Elapsed: 00:00:04
Total cpu time: 90.71u 0.12s 90.83t Elapsed: 00:00:04
Start: Tue May 21 15:54:49 2013 End: Tue May 21 15:54:53 2013