Query 001671
Match_columns 1034
No_of_seqs 304 out of 1654
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07990 NABP: Nucleic acid bi 100.0 1.2E-86 2.7E-91 737.3 22.4 377 285-698 1-385 (385)
2 KOG1488 Translational represso 100.0 9.5E-71 2.1E-75 631.3 33.0 346 676-1022 152-502 (503)
3 cd07920 Pumilio Pumilio-family 100.0 7.1E-55 1.5E-59 482.5 35.1 319 696-1015 3-322 (322)
4 COG5099 RNA-binding protein of 100.0 1.4E-47 3E-52 462.1 28.8 314 708-1022 447-764 (777)
5 KOG2049 Translational represso 100.0 3.8E-44 8.3E-49 415.2 21.8 312 697-1014 212-531 (536)
6 cd07920 Pumilio Pumilio-family 100.0 6.9E-40 1.5E-44 363.0 31.3 296 677-979 18-322 (322)
7 KOG1488 Translational represso 100.0 8.7E-40 1.9E-44 376.2 17.6 264 676-940 223-498 (503)
8 KOG2050 Puf family RNA-binding 100.0 2.8E-31 6E-36 303.5 27.8 301 666-1015 137-440 (652)
9 COG5099 RNA-binding protein of 100.0 1.5E-29 3.3E-34 306.2 18.9 244 780-1029 447-691 (777)
10 KOG2188 Predicted RNA-binding 100.0 1.3E-26 2.8E-31 267.9 32.5 334 676-1015 64-605 (650)
11 KOG2049 Translational represso 99.9 3.1E-26 6.7E-31 266.6 21.5 279 734-1020 213-497 (536)
12 KOG2188 Predicted RNA-binding 99.9 4.9E-21 1.1E-25 222.1 23.3 290 730-1020 91-574 (650)
13 KOG2050 Puf family RNA-binding 99.8 2.1E-19 4.5E-24 206.8 26.9 246 767-1020 157-407 (652)
14 KOG4574 RNA-binding protein (c 99.6 3.3E-16 7.2E-21 185.1 9.6 297 725-1024 533-858 (1007)
15 KOG4574 RNA-binding protein (c 99.3 2.6E-11 5.6E-16 144.5 12.3 212 705-917 549-765 (1007)
16 PF00806 PUF: Pumilio-family R 97.8 5.9E-06 1.3E-10 63.6 1.3 33 736-768 2-34 (35)
17 PF00806 PUF: Pumilio-family R 97.6 7.2E-05 1.6E-09 57.5 4.1 32 961-992 4-35 (35)
18 smart00025 Pumilio Pumilio-lik 97.5 4.6E-05 1E-09 57.6 1.2 26 739-764 5-30 (36)
19 smart00025 Pumilio Pumilio-lik 97.2 0.00021 4.6E-09 53.9 2.7 34 700-733 2-35 (36)
20 PRK05686 fliG flagellar motor 95.1 5.4 0.00012 46.1 24.1 120 891-1023 200-328 (339)
21 TIGR00207 fliG flagellar motor 89.8 45 0.00097 38.8 26.9 43 893-940 199-241 (338)
22 PRK05686 fliG flagellar motor 89.1 50 0.0011 38.3 22.1 83 714-805 82-165 (339)
23 PF04286 DUF445: Protein of un 84.2 82 0.0018 35.9 23.2 49 907-955 289-339 (367)
24 PF12231 Rif1_N: Rap1-interact 81.4 59 0.0013 38.1 17.2 18 932-949 277-294 (372)
25 PF08144 CPL: CPL (NUC119) dom 81.0 5.5 0.00012 40.9 7.5 20 965-984 115-134 (148)
26 PF10508 Proteasom_PSMB: Prote 78.3 1.7E+02 0.0038 35.8 22.9 94 679-772 4-101 (503)
27 PF12231 Rif1_N: Rap1-interact 77.0 53 0.0012 38.5 15.0 65 896-969 179-243 (372)
28 PRK07194 fliG flagellar motor 75.2 1.7E+02 0.0037 34.1 22.5 18 1009-1026 308-325 (334)
29 PF08144 CPL: CPL (NUC119) dom 73.3 12 0.00025 38.6 7.4 59 961-1022 64-133 (148)
30 KOG1059 Vesicle coat complex A 71.0 2.5E+02 0.0054 36.0 18.7 38 736-773 219-262 (877)
31 TIGR00207 fliG flagellar motor 70.9 2.1E+02 0.0046 33.3 22.2 23 721-743 49-71 (338)
32 KOG1992 Nuclear export recepto 69.7 1.3E+02 0.0029 38.8 16.3 66 858-923 701-770 (960)
33 COG1536 FliG Flagellar motor s 67.7 2.5E+02 0.0055 32.9 24.8 52 972-1023 263-328 (339)
34 PF09770 PAT1: Topoisomerase I 65.9 7.8 0.00017 49.8 5.3 93 703-795 576-694 (808)
35 PF05918 API5: Apoptosis inhib 65.6 92 0.002 38.7 13.9 223 704-927 83-346 (556)
36 COG1747 Uncharacterized N-term 63.3 3.8E+02 0.0082 33.4 17.7 79 729-807 45-123 (711)
37 PF04840 Vps16_C: Vps16, C-ter 58.9 3.4E+02 0.0074 31.4 17.8 23 785-807 42-64 (319)
38 PF11510 FA_FANCE: Fanconi Ana 58.1 2.5E+02 0.0054 31.9 14.5 77 858-938 145-225 (263)
39 PF01602 Adaptin_N: Adaptin N 55.7 4.3E+02 0.0094 31.6 19.3 19 767-785 110-128 (526)
40 KOG4368 Predicted RNA binding 55.3 3.1E+02 0.0068 34.2 15.3 19 789-807 92-112 (757)
41 PF11573 Med23: Mediator compl 53.9 2.2E+02 0.0047 39.1 15.2 104 913-1019 274-388 (1341)
42 KOG1248 Uncharacterized conser 51.1 6E+02 0.013 34.4 17.9 20 962-981 891-910 (1176)
43 KOG1240 Protein kinase contain 50.7 5.3E+02 0.012 35.1 17.2 73 715-790 445-526 (1431)
44 PF09770 PAT1: Topoisomerase I 49.6 23 0.0005 45.7 5.5 41 739-779 576-616 (808)
45 PF12460 MMS19_C: RNAPII trans 49.2 5.2E+02 0.011 30.7 18.7 29 785-813 117-145 (415)
46 cd03567 VHS_GGA VHS domain fam 48.7 2.5E+02 0.0055 28.7 11.7 77 930-1022 58-135 (139)
47 COG5593 Nucleic-acid-binding p 48.2 3.8E+02 0.0082 33.3 14.4 64 786-850 209-276 (821)
48 cd07439 FANCE_c-term Fanconi a 48.1 4.5E+02 0.0098 29.7 15.7 72 855-927 133-207 (254)
49 KOG1070 rRNA processing protei 47.7 8.6E+02 0.019 33.9 18.5 35 704-738 1448-1486(1710)
50 cd03569 VHS_Hrs_Vps27p VHS dom 46.5 3.4E+02 0.0073 27.7 13.6 75 930-1022 61-136 (142)
51 PLN03218 maturation of RBCL 1; 46.1 7.9E+02 0.017 33.3 18.6 23 932-954 689-711 (1060)
52 PF04286 DUF445: Protein of un 46.0 5E+02 0.011 29.5 23.0 33 970-1003 313-346 (367)
53 PTZ00429 beta-adaptin; Provisi 45.7 8.1E+02 0.018 31.9 24.0 303 717-1027 37-385 (746)
54 PF11864 DUF3384: Domain of un 45.7 6.3E+02 0.014 30.6 16.5 21 776-796 239-259 (464)
55 KOG1992 Nuclear export recepto 45.6 8.4E+02 0.018 32.1 22.3 224 761-986 492-755 (960)
56 COG5240 SEC21 Vesicle coat com 45.2 3.9E+02 0.0084 33.6 14.0 111 885-1002 345-462 (898)
57 PF11510 FA_FANCE: Fanconi Ana 44.9 5.2E+02 0.011 29.4 15.5 135 717-868 40-189 (263)
58 KOG0166 Karyopherin (importin) 44.3 5.6E+02 0.012 31.8 15.5 171 779-950 209-404 (514)
59 PF14666 RICTOR_M: Rapamycin-i 43.8 78 0.0017 34.9 7.7 134 856-999 83-224 (226)
60 KOG2213 Apoptosis inhibitor 5/ 43.4 6.7E+02 0.015 30.3 19.1 16 704-719 85-100 (460)
61 KOG1058 Vesicle coat complex C 42.7 9E+02 0.02 31.6 19.8 20 988-1007 431-450 (948)
62 PF10521 DUF2454: Protein of u 42.7 3.2E+02 0.0069 30.9 12.6 83 723-818 107-204 (282)
63 KOG2203 GTP-binding protein [G 42.7 3.3E+02 0.0072 34.1 13.0 40 931-972 469-508 (772)
64 PF10521 DUF2454: Protein of u 42.3 5.5E+02 0.012 29.0 14.5 53 784-836 95-154 (282)
65 KOG1059 Vesicle coat complex A 42.1 9E+02 0.02 31.4 18.2 59 772-830 219-279 (877)
66 KOG2160 Armadillo/beta-catenin 41.6 6.6E+02 0.014 29.7 19.3 43 724-767 95-143 (342)
67 PF14911 MMS22L_C: S-phase gen 40.9 5.2E+02 0.011 30.9 14.2 87 730-816 168-265 (373)
68 PF03224 V-ATPase_H_N: V-ATPas 39.8 4.4E+02 0.0095 30.0 13.3 33 975-1007 240-272 (312)
69 PF01603 B56: Protein phosphat 39.5 7.4E+02 0.016 29.6 18.9 102 907-1015 250-361 (409)
70 PRK07003 DNA polymerase III su 38.3 1.8E+02 0.004 37.7 10.6 23 988-1010 324-346 (830)
71 PF14631 FancD2: Fanconi anaem 36.3 1.4E+03 0.031 32.1 20.3 288 676-996 239-580 (1426)
72 PF05918 API5: Apoptosis inhib 36.2 9.8E+02 0.021 30.1 17.9 26 775-800 82-109 (556)
73 PF04078 Rcd1: Cell differenti 36.1 7E+02 0.015 28.4 15.1 39 756-794 3-49 (262)
74 PF02854 MIF4G: MIF4G domain; 35.8 4.6E+02 0.01 26.7 11.7 31 990-1020 170-204 (209)
75 TIGR00400 mgtE Mg2+ transporte 35.6 2.1E+02 0.0046 34.5 10.3 15 788-802 106-120 (449)
76 KOG4368 Predicted RNA binding 35.2 7.5E+02 0.016 31.1 14.3 11 859-869 165-175 (757)
77 PF04078 Rcd1: Cell differenti 34.7 2E+02 0.0043 32.7 9.0 29 911-939 203-231 (262)
78 KOG1070 rRNA processing protei 34.1 4.3E+02 0.0093 36.5 13.0 142 688-834 1452-1596(1710)
79 PF01153 Glypican: Glypican; 33.9 5.2E+02 0.011 32.4 13.5 30 925-954 259-290 (557)
80 PF12348 CLASP_N: CLASP N term 33.6 2.7E+02 0.0059 29.6 9.9 175 753-949 31-227 (228)
81 KOG3821 Heparin sulfate cell s 32.6 1.1E+03 0.024 29.6 19.3 78 925-1022 267-346 (563)
82 PF02854 MIF4G: MIF4G domain; 32.3 2.5E+02 0.0055 28.7 9.1 16 782-797 69-84 (209)
83 COG1536 FliG Flagellar motor s 32.3 9E+02 0.019 28.5 22.4 61 930-998 263-323 (339)
84 KOG2141 Protein involved in hi 31.8 4.6E+02 0.01 33.7 12.2 19 885-903 387-405 (822)
85 KOG2051 Nonsense-mediated mRNA 30.8 1.5E+03 0.033 30.7 19.6 79 875-955 584-674 (1128)
86 PRK07764 DNA polymerase III su 30.7 5.1E+02 0.011 34.1 13.1 22 824-845 238-259 (824)
87 KOG0166 Karyopherin (importin) 30.0 1.2E+03 0.026 29.2 17.7 154 783-939 255-429 (514)
88 PLN03083 E3 UFM1-protein ligas 29.7 1.4E+03 0.031 30.0 19.9 45 752-800 532-576 (803)
89 cd03565 VHS_Tom1 VHS domain fa 29.5 6.2E+02 0.013 25.8 12.9 77 930-1022 59-137 (141)
90 PF03448 MgtE_N: MgtE intracel 28.8 78 0.0017 29.4 4.2 86 719-804 8-93 (102)
91 KOG1241 Karyopherin (importin) 28.6 1.1E+03 0.025 30.7 14.8 45 967-1012 773-818 (859)
92 PF08568 Kinetochor_Ybp2: Unch 28.5 9.5E+02 0.021 30.3 14.8 45 880-924 464-509 (633)
93 COG4399 Uncharacterized protei 28.4 1.1E+03 0.023 28.2 15.4 8 716-723 95-102 (376)
94 TIGR00400 mgtE Mg2+ transporte 28.1 2.5E+02 0.0054 33.9 9.2 82 715-808 21-102 (449)
95 PF14838 INTS5_C: Integrator c 27.8 1.4E+03 0.031 29.5 20.0 25 988-1012 373-398 (696)
96 KOG2085 Serine/threonine prote 27.7 1.1E+03 0.023 28.8 13.7 153 675-833 174-366 (457)
97 KOG2956 CLIP-associating prote 26.9 1.3E+03 0.028 28.6 14.8 12 993-1004 482-493 (516)
98 PLN03083 E3 UFM1-protein ligas 26.8 1.6E+03 0.034 29.6 19.1 74 765-844 514-602 (803)
99 PRK07764 DNA polymerase III su 26.8 5.4E+02 0.012 33.8 12.3 29 982-1010 325-353 (824)
100 KOG2956 CLIP-associating prote 26.4 1.3E+03 0.028 28.5 14.5 23 901-923 433-455 (516)
101 PF05794 Tcp11: T-complex prot 25.4 3E+02 0.0064 32.9 9.2 48 697-744 21-69 (441)
102 cd03568 VHS_STAM VHS domain fa 25.1 7.6E+02 0.016 25.3 12.8 76 930-1023 57-133 (144)
103 KOG2051 Nonsense-mediated mRNA 25.1 1.9E+03 0.04 29.9 18.5 37 837-873 583-619 (1128)
104 PF08625 Utp13: Utp13 specific 25.0 4.5E+02 0.0097 27.0 9.1 57 715-773 15-71 (141)
105 KOG2027 Spindle pole body prot 24.8 7E+02 0.015 29.9 11.8 20 920-939 102-121 (388)
106 PF01603 B56: Protein phosphat 24.6 1.3E+03 0.027 27.7 16.8 46 826-872 280-325 (409)
107 KOG2027 Spindle pole body prot 24.3 9.4E+02 0.02 28.9 12.7 15 870-884 142-156 (388)
108 PRK15362 pathogenicity island 24.1 9.7E+02 0.021 29.3 12.6 84 690-780 212-295 (473)
109 PF14666 RICTOR_M: Rapamycin-i 24.0 3.4E+02 0.0074 30.0 8.6 24 840-863 139-162 (226)
110 KOG2759 Vacuolar H+-ATPase V1 23.9 1.4E+03 0.03 27.9 14.0 250 713-999 134-437 (442)
111 PRK07194 fliG flagellar motor 23.1 1.2E+03 0.027 27.1 20.7 114 720-842 46-161 (334)
112 PRK07003 DNA polymerase III su 23.1 1.4E+03 0.03 30.3 14.5 12 749-760 159-170 (830)
113 KOG1248 Uncharacterized conser 22.9 2.1E+03 0.045 29.7 19.7 29 823-851 719-747 (1176)
114 KOG2213 Apoptosis inhibitor 5/ 22.7 1.4E+03 0.031 27.7 17.8 35 905-939 209-243 (460)
115 KOG2072 Translation initiation 22.7 1.9E+03 0.041 29.1 19.3 45 815-859 174-218 (988)
116 PF05794 Tcp11: T-complex prot 22.7 3.7E+02 0.0081 32.0 9.4 67 892-979 99-165 (441)
117 PLN03200 cellulose synthase-in 22.0 2.7E+03 0.059 30.7 27.4 99 930-1029 610-732 (2102)
118 PF06025 DUF913: Domain of Unk 21.5 7.1E+02 0.015 29.6 11.1 63 727-797 71-134 (379)
119 PF00790 VHS: VHS domain; Int 21.4 6.7E+02 0.015 25.2 9.6 56 967-1022 82-140 (140)
120 COG2733 Predicted membrane pro 20.9 1.5E+03 0.033 27.3 17.9 229 782-1017 125-371 (415)
121 PF08625 Utp13: Utp13 specific 20.6 9.3E+02 0.02 24.7 10.4 25 894-918 47-71 (141)
122 KOG2171 Karyopherin (importin) 20.5 2.3E+03 0.049 29.2 23.4 81 715-797 209-303 (1075)
123 COG5240 SEC21 Vesicle coat com 20.3 1.9E+03 0.04 28.1 17.8 125 810-935 343-473 (898)
124 KOG0844 Transcription factor E 20.2 56 0.0012 37.3 1.6 33 40-74 295-328 (408)
125 PF05879 RHD3: Root hair defec 20.1 2E+03 0.043 28.4 19.0 267 727-1020 149-462 (742)
No 1
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins. One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
Probab=100.00 E-value=1.2e-86 Score=737.27 Aligned_cols=377 Identities=58% Similarity=0.962 Sum_probs=363.2
Q ss_pred cCCCCCCCCCCccccccCCcCCcCCCCCCCCCCCCCCChHHHHHHhcCCCCCCCCCCcccccccchhhhchhhhcc-cCC
Q 001671 285 RAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHS-LFN 363 (1034)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 363 (1034)
|+|||||||||+ |+.+.|||+++|+++||+++|+++|+|||+|||||||||+++++++|+|+|+|+|||||||++ ||+
T Consensus 1 R~PSp~lpPIG~-Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~ 79 (385)
T PF07990_consen 1 RAPSPCLPPIGV-RVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFN 79 (385)
T ss_pred CCCCCCCCCccc-cccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhc
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCccccccCccccCccccccccccccCCCCCCCCCCCCCCCCccccccccccccccccCCCCCccCCCCCCCccCCCC
Q 001671 364 LQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGG 443 (1034)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (1034)
+|++|+|.+||.|+++++++|+++| ++++..+.+.++|+|++.++.+++++
T Consensus 80 ~q~~q~~~~Qq~~~~~se~~~l~~~-----------------------------e~~~a~~~~~~s~~~~~~~s~~~~~g 130 (385)
T PF07990_consen 80 VQGGQNQGNQQSYMKKSESGHLNAP-----------------------------ELQKAAFPSGNSYFKNSNASKLSGGG 130 (385)
T ss_pred CccchhhhhhHHHhhccchhhcccc-----------------------------ccccccCCCccccccCCCcccccCCC
Confidence 9999999999999999999999764 56777888899999999999999999
Q ss_pred CCCCCCccCCCCCCCCCCCCcCcccCCCCCCCCcCCCCCCCCCCcchhhhHHhhhhcCCCCCccccccCCCCchhhhhhH
Q 001671 444 NSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAA 523 (1034)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1034)
..+..||+++.++..+ +||++||++|+||.+++++|++|+|||+++++++++++++|+|.+| +++.++++...+
T Consensus 131 ~~~~~~q~~~~~n~~~-----~gy~~n~~~~s~~~~~~~~gn~p~~fd~~~~~s~~~~~~~~s~~~g-~~~~s~~~~~~~ 204 (385)
T PF07990_consen 131 GSPFPYQNSDNPNSSF-----GGYALNPALPSMMASQLNNGNIPPLFDNSAAASALASPGMDSRSLG-GGLDSGGNQGAS 204 (385)
T ss_pred CCCCcccCCCcccccc-----cccccCccchhhhhccccCCCCCccccccccchhhccCCCcccccC-Cccccccccccc
Confidence 9999999988877766 8999999999999999999999999999999999999999999999 889988877788
Q ss_pred hhhhhccccCCCCCCCCCCCCCChHHHhhhccchHHHHHhhhcCCCCcc---CCCCccchhhhHHHhhhccccccccccC
Q 001671 524 ELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD---IGNSYMDLLGLQKAYLGALLSPQKSQYG 600 (1034)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1034)
|+++++|+|||+++.++|+||+||+|+||||+++|++++++++.||+++ +|++++|+++.||+||++||++||+|||
T Consensus 205 d~~~l~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy~ 284 (385)
T PF07990_consen 205 DGQNLNRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAAQNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQYG 284 (385)
T ss_pred chhhhhhhcccccCcccCCCCCCchHHHHhccccchhhhhhccCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999997799999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCcCCCCCCCccCCCCCC----CCCCCCCCCCCCCCCCCCCCcCCCCCccCCCCCCCCCCCCCCCCCC
Q 001671 601 VPYLNKSGSLNNNLYGNPAFGLGMSYPGGP----LLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLD 676 (1034)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~p~~~~~p~~~~~~~~r~~s~~r~~~gg~~g~w~~~~g~~~d 676 (1034)
+|+ .|+|+++++|||+|.||++|+|||+| ++|.+|+|+++|+++++|++||+++|||.+||.+|+|+.|.++++|
T Consensus 285 ~P~-~~~~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~~d 363 (385)
T PF07990_consen 285 VPL-KKSGSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGNMD 363 (385)
T ss_pred Ccc-ccCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCccccccccccccccccccccccc
Confidence 999 88888999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhcCccccchHH
Q 001671 677 ESFASSLLDEFKSNKTKCFELS 698 (1034)
Q Consensus 677 ~~~~s~LLeEfk~neer~~~Ls 698 (1034)
+.|.+.||||||++|.|+|+|+
T Consensus 364 ~~~~sSlLEEFKsNKtr~FELS 385 (385)
T PF07990_consen 364 ENFASSLLEEFKSNKTRSFELS 385 (385)
T ss_pred ccchhHHHHHHhcCCccceecC
Confidence 9999999999999999999874
No 2
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-71 Score=631.29 Aligned_cols=346 Identities=58% Similarity=0.951 Sum_probs=330.0
Q ss_pred ChhhhHHHHHhhhcC-ccccchHHHHHHHHHHHhhCCCcCHHHHHhhhcCCH-HHHHHHHHHHHHhHHhhhccccccchh
Q 001671 676 DESFASSLLDEFKSN-KTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATT-EEKNMVFQEIMPQALSLMTDVFGNYVI 753 (1034)
Q Consensus 676 d~~~~s~LLeEfk~n-eer~~~LseI~G~ivELa~Dq~GSRvLQklLe~as~-Eqr~~If~EI~p~~leLmtD~fGNhVI 753 (1034)
+.+.++.+++.+.+. ..+.+.+.++.+++++|++||+||||||++|+.++. +++..||++|.+.+.+||+|.||||||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvI 231 (503)
T KOG1488|consen 152 NSTGPSFLLDPFRSNSLSKTLELVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVI 231 (503)
T ss_pred CCCCCCccccccccccccccccccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 334456788888877 777788999999999999999999999999999988 999999999999999999999999999
Q ss_pred hhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCC
Q 001671 754 QKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVP 833 (1034)
Q Consensus 754 QKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p 833 (1034)
||+||+++++++..+...+.+++..||+|+||||||||+|++.+.+++.+|++||.+++.+|++|++||||||||||+.+
T Consensus 232 QkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ie~~p 311 (503)
T KOG1488|consen 232 QKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCIETLP 311 (503)
T ss_pred hhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcccceehhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH--hHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHH
Q 001671 834 EDAIQFIVLTFYD--QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERS 911 (1034)
Q Consensus 834 ~e~~q~Ii~~L~g--~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~ 911 (1034)
.+.++||++.|.+ ++..+++|+|||+|||++||+|..+++ ..++++|..++..|+.|+||||||||+|+++.++++.
T Consensus 312 ~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~-~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~ 390 (503)
T KOG1488|consen 312 PDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQK-QPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDT 390 (503)
T ss_pred hHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhh-hHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhh
Confidence 9999999999999 999999999999999999999976655 4599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCc-hhHHHhhcCCchhHHHHHHHhcCCHHHHHH
Q 001671 912 AIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEEN-EPLQVMMKDQFANYVVQKVLETCDDQQLEL 990 (1034)
Q Consensus 912 ~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~-e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ 990 (1034)
.|++.|.+++++|+++||+|+|||+||.++...+|..|++|+++..++. +.|..||+|+|||||||++|++|++.+|++
T Consensus 391 ~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~ 470 (503)
T KOG1488|consen 391 IIIKCLLGNLLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQREL 470 (503)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999999999999999999876654 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHhcc
Q 001671 991 ILNRIKVHLNALKKYTYGKHIVARVEKLVAAG 1022 (1034)
Q Consensus 991 ILseLk~~L~eL~~s~yGk~IV~klekli~~g 1022 (1034)
|+.+|++|+..|++++|||||+++|||+...+
T Consensus 471 i~~rI~~h~~~Lrk~syGKhIia~lek~~~~~ 502 (503)
T KOG1488|consen 471 IKSRVKPHASRLRKFSYGKHIIAKLEKLRSKG 502 (503)
T ss_pred HHHHHHHHHHHHccCccHHHHHHHHHHhcccC
Confidence 99999999999999999999999999987643
No 3
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=7.1e-55 Score=482.53 Aligned_cols=319 Identities=55% Similarity=0.924 Sum_probs=306.5
Q ss_pred hHHHHH-HHHHHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHH
Q 001671 696 ELSEIA-GHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTG 774 (1034)
Q Consensus 696 ~LseI~-G~ivELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g 774 (1034)
.|+++. |+++++|.|++|||+||++|+.++.++++.||+++.+++.+||.|+|||||||++|++++++++..|++.+.+
T Consensus 3 ~~~~~~~~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~ 82 (322)
T cd07920 3 TLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILG 82 (322)
T ss_pred CHHhccCcchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466666 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCChhHHHHHHHHHHHhHHHhhcC
Q 001671 775 HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTH 854 (1034)
Q Consensus 775 ~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~h 854 (1034)
++.+|+.|+|||||||++|+.+..+++..|+++|.+++.+|++|++||||||+++++++++.++.|++.+.+++..+++|
T Consensus 83 ~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~ 162 (322)
T cd07920 83 HVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTH 162 (322)
T ss_pred HHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHH
Q 001671 855 PYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVI 934 (1034)
Q Consensus 855 kyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VV 934 (1034)
++||+|+|++|+.+. ++.+..+++++.+++..|+.|+|||||||++|+++.++.++.|++.+.+++++|+++||||+||
T Consensus 163 ~~G~~vvq~~l~~~~-~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vv 241 (322)
T cd07920 163 PYGCRVIQRCLEHCS-EEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVV 241 (322)
T ss_pred ccccHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 999999999999884 6677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCCchHHHHH
Q 001671 935 EKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVAR 1014 (1034)
Q Consensus 935 EKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~yGk~IV~k 1014 (1034)
|+||+.+++++|+.|+++|+....+++++.+|++|+|||||||++|+.+++..++.|+..|++++.+|+.++||++|+++
T Consensus 242 e~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~~~~~~L~~~~~G~~v~~~ 321 (322)
T cd07920 242 EKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIRPHLPSLRKSPYGKHILAK 321 (322)
T ss_pred HHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHh
Confidence 99999999999999999999754324689999999999999999999999999999999999999999999999999976
Q ss_pred H
Q 001671 1015 V 1015 (1034)
Q Consensus 1015 l 1015 (1034)
|
T Consensus 322 ~ 322 (322)
T cd07920 322 L 322 (322)
T ss_pred C
Confidence 4
No 4
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-47 Score=462.07 Aligned_cols=314 Identities=42% Similarity=0.691 Sum_probs=297.3
Q ss_pred hhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccH
Q 001671 708 SADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCR 787 (1034)
Q Consensus 708 a~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSr 787 (1034)
++||+|||+||++|+.-+.++++.||.++.+...+||.|.||||||||+||+++++|+..++..+.+++..++.|+||||
T Consensus 447 ~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtr 526 (777)
T COG5099 447 CKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTR 526 (777)
T ss_pred cCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCHHHHH-HHHHHHHHHHHHHhcccCCchHHHHHHhhCChhHHHHHHHHHHHhHHHhhcCCCCchHHHHHHh
Q 001671 788 VIQKAIEVVELDQQT-QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLE 866 (1034)
Q Consensus 788 VVQklLe~~s~eqr~-~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe 866 (1034)
|+||+|+++..+.+. .|+++|.+.+..|++|++||||||||+++++.+..++|++.+.+++.++++|+|||+|||+|+|
T Consensus 527 v~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~Gs~vvq~~le 606 (777)
T COG5099 527 VLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYGSRVVQRCLE 606 (777)
T ss_pred HHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccccHHHHHHHH
Confidence 999999999988777 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHHHHHH-HHHHHhcCchHHHHHHHHHhcCCHHH
Q 001671 867 HCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTG-QIVQMSQQKFASNVIEKCLSFGTPAE 945 (1034)
Q Consensus 867 ~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g-~Iv~LS~~K~GS~VVEKcL~~as~k~ 945 (1034)
+|....+ ..++++|...+..|++|+||||||||+|+.+.+..++.|+..+.. +++++++|||||+||||||.++...+
T Consensus 607 ~~~~~~~-~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~~~~~~ 685 (777)
T COG5099 607 NCNSEDK-ENLVEEIISNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLSKRVVELSTHKFASNVVEKCIKYASDSF 685 (777)
T ss_pred hccHhHH-HHHHHHHHHHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 9965544 779999999999999999999999999999999999999999988 99999999999999999999998877
Q ss_pred -HHHHHHHHhcCCCCchh-HHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHhcc
Q 001671 946 -RQALVNEMLGSIEENEP-LQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAG 1022 (1034)
Q Consensus 946 -Rk~IIkeLlg~~~~~e~-L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~yGk~IV~klekli~~g 1022 (1034)
|++|++++.....+.+. +..|+.|+|||||+|++++.....+|..+.+.++.++..|..++||+||.+++|+.-...
T Consensus 686 ~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~~~~~l~~~~i~~~~~~l~~s~~g~~i~~~le~~~~~s 764 (777)
T COG5099 686 KRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPEIQRSLLARAIKKVIPSLKKSMYGQHILALLEKVGSSS 764 (777)
T ss_pred HHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCchhhHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHhccc
Confidence 59999999973333343 889999999999999999999999999999999999999999999999999999986543
No 5
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-44 Score=415.25 Aligned_cols=312 Identities=29% Similarity=0.519 Sum_probs=290.6
Q ss_pred HHHHHHHHHHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHH--
Q 001671 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTG-- 774 (1034)
Q Consensus 697 LseI~G~ivELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g-- 774 (1034)
+.++.+.+.-+|+|++|||++|+.+..++.+....||.++..++.+||.|+||+++|||+|+.|+++|+..|+..++.
T Consensus 212 ~~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p 291 (536)
T KOG2049|consen 212 MVEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDP 291 (536)
T ss_pred hhccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCc
Confidence 566779999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -HHHHhhhcccccHHHHHHHhhCCHHH-HHHHHHHHHHHHHHHhcccCCchHHHHHHhhCChhHHHHHHHHHHHhHHHhh
Q 001671 775 -HVLTLSLQMYGCRVIQKAIEVVELDQ-QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLS 852 (1034)
Q Consensus 775 -~V~eLs~hkyGSrVVQklLe~~s~eq-r~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls 852 (1034)
.|..++.++||+|+||++++.....+ ...+++.|...+..|++|.||+||||+||++.+++..+++++.+...+..++
T Consensus 292 ~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l~e~i~~~c~~iA 371 (536)
T KOG2049|consen 292 RLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEFLYEAILRYCLDLA 371 (536)
T ss_pred cceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhHHHHHHHHHHHHHH
Confidence 69999999999999999999876554 4455678999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHH
Q 001671 853 THPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASN 932 (1034)
Q Consensus 853 ~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~ 932 (1034)
+|++||+|||+||....+ .+++.++++|..+...|++|+|||||||++|+.-.+.....|+++|.+++++||.+||||+
T Consensus 372 ~~~hGCcvLq~cl~~~~~-~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~g~~veLS~qKfgS~ 450 (536)
T KOG2049|consen 372 TDQHGCCVLQKCLDYSRG-EQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLRGHYVELSFQKFGSH 450 (536)
T ss_pred HhccccchhHHHhcchhH-HHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhhhHHHHHHHHhhccH
Confidence 999999999999999754 6788999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHhhCCCc
Q 001671 933 VIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDD----QQLELILNRIKVHLNALKKYTYG 1008 (1034)
Q Consensus 933 VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd----~qRe~ILseLk~~L~eL~~s~yG 1008 (1034)
||||||+.+... +..||.||++. +.|.+|+.|+|||||||++|.+... ..+..++..+++.+..|+..++|
T Consensus 451 vVEk~L~~~~~~-~~~iV~ell~~----~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~ 525 (536)
T KOG2049|consen 451 VVEKLLKVRESS-RAQIVLELLSC----DELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGG 525 (536)
T ss_pred HHHHHHhcCcch-hhHHHHHHHcc----ccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCccc
Confidence 999999987543 47899999965 5799999999999999999999986 66889999999999999999999
Q ss_pred hHHHHH
Q 001671 1009 KHIVAR 1014 (1034)
Q Consensus 1009 k~IV~k 1014 (1034)
+++..+
T Consensus 526 ~~~~~~ 531 (536)
T KOG2049|consen 526 NIALIK 531 (536)
T ss_pred ceeeeh
Confidence 998644
No 6
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=6.9e-40 Score=362.98 Aligned_cols=296 Identities=25% Similarity=0.432 Sum_probs=278.9
Q ss_pred hhhhHHHHHhh---hcCccccchHHHHHHHHHHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchh
Q 001671 677 ESFASSLLDEF---KSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVI 753 (1034)
Q Consensus 677 ~~~~s~LLeEf---k~neer~~~LseI~G~ivELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVI 753 (1034)
+...+.+++.+ .+.+++...+.++.+++++++.|++|++++|++|++++.+++..|++++.+++..|++|+||+|||
T Consensus 18 ~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vl 97 (322)
T cd07920 18 DQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVI 97 (322)
T ss_pred CchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 34455555532 356777788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCC
Q 001671 754 QKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVP 833 (1034)
Q Consensus 754 QKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p 833 (1034)
||+|++++++++..|+++|.+++.+|+.|.||++|||++++.++++++..|+++|.+++..++.|++|++|+|++|+.++
T Consensus 98 qkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~ 177 (322)
T cd07920 98 QKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCS 177 (322)
T ss_pred HHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHH
Q 001671 834 EDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAI 913 (1034)
Q Consensus 834 ~e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~I 913 (1034)
++.++.|++.+.+++..|+.+++|++|||++++... +..+..+++.+.+++..|+.++||++||+++|+++.++.|..|
T Consensus 178 ~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~-~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~i 256 (322)
T cd07920 178 EEQREPLLEEILEHALELVQDQFGNYVVQHVLELGD-PDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELI 256 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHH
Confidence 999999999999999999999999999999999974 6677889999999999999999999999999999999999999
Q ss_pred HHHHH------HHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHH
Q 001671 914 IKKLT------GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKV 979 (1034)
Q Consensus 914 Ie~L~------g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkL 979 (1034)
++.|. +++.+|++++||++||+++|..++++.++.|+..|. +++..|+.++||+.||.++
T Consensus 257 i~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~------~~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 257 IDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIR------PHLPSLRKSPYGKHILAKL 322 (322)
T ss_pred HHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHH------HHHHHHcCCCcHHHHHHhC
Confidence 99996 489999999999999999999999999999999998 7899999999999999875
No 7
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-40 Score=376.20 Aligned_cols=264 Identities=28% Similarity=0.457 Sum_probs=246.0
Q ss_pred ChhhhHHHHH---hhhcCccccchHHHHHHHHHHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccch
Q 001671 676 DESFASSLLD---EFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752 (1034)
Q Consensus 676 d~~~~s~LLe---Efk~neer~~~LseI~G~ivELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhV 752 (1034)
.+.|..++++ |+.+.+++..+...++|++.++|.|.+||||||+.|++-+.+...+++.|+..++..+++|++||||
T Consensus 223 ~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnHV 302 (503)
T KOG1488|consen 223 TDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNHV 302 (503)
T ss_pred HHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhccccee
Confidence 3444445555 4455677777788899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHHHH--HHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHh
Q 001671 753 IQKFFEHGTASQVRELADQLTG--HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIE 830 (1034)
Q Consensus 753 IQKLLe~~s~eqr~~Lle~L~g--~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE 830 (1034)
|||+||..+++.+..|++.+.+ ++..||.|+|||||||++||.|+.+++..+++||..++..|+.|+|||||||++|+
T Consensus 303 iQK~ie~~p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie 382 (503)
T KOG1488|consen 303 IQKCIETLPPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIE 382 (503)
T ss_pred hhhhhhccChHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHH-------HHHHhcCcchhHHHHHHHh
Q 001671 831 CVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQS-------VCMLAQDQYGNYVVQHVLE 903 (1034)
Q Consensus 831 ~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~-------l~~La~DqyGNyVVQ~LLe 903 (1034)
+..++....|++.+.++++++++|||+|+||++||+++ .+.++..|++||++. +..|+.|+|||||||++|+
T Consensus 383 ~g~~~~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a-~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~ 461 (503)
T KOG1488|consen 383 HGSPYRDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFA-PPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMID 461 (503)
T ss_pred cCChhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHH
Confidence 99998889999999999999999999999999999998 566788899999864 7889999999999999999
Q ss_pred hCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhc
Q 001671 904 HGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSF 940 (1034)
Q Consensus 904 ~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~ 940 (1034)
.+.+.+|+.|+.+++.++..|-..+||-|+|+++=++
T Consensus 462 ~~~~~q~~~i~~rI~~h~~~Lrk~syGKhIia~lek~ 498 (503)
T KOG1488|consen 462 ICGPEQRELIKSRVKPHASRLRKFSYGKHIIAKLEKL 498 (503)
T ss_pred hcCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHh
Confidence 9999999999999999999999999999999986543
No 8
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-31 Score=303.53 Aligned_cols=301 Identities=20% Similarity=0.361 Sum_probs=253.8
Q ss_pred CCCCCCCCCCChhhhHHHHHhhhcCccccchHHHHHHHHHHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhc
Q 001671 666 PWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMT 745 (1034)
Q Consensus 666 ~w~~~~g~~~d~~~~s~LLeEfk~neer~~~LseI~G~ivELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmt 745 (1034)
-|...|.++.+.+.|..++.| ++.-++|++.+++..|+.|||||+|+++++.++|+.||+++.|.+++||+
T Consensus 137 lWEkLR~k~~~ke~R~klv~e---------l~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~k 207 (652)
T KOG2050|consen 137 LWEKLRRKTTPKEERDKLVSE---------LYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAK 207 (652)
T ss_pred HHHHHhccCCcHHHHHHHHHH---------HHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHH
Confidence 388888777777778888877 67888999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhcccCCchH
Q 001671 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIE-VVELDQQTQMVKELDGHIMRCVRDQNGNHV 824 (1034)
Q Consensus 746 D~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe-~~s~eqr~~LV~EL~~~i~eL~kDq~GNhV 824 (1034)
++||-|+|||||+|++++++..|++.|.||+..|..|+.|+.||..++. +++.+||..|+.||++....++++.+- ..
T Consensus 208 skY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~-~T 286 (652)
T KOG2050|consen 208 SKYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSND-KT 286 (652)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCc-cc
Confidence 9999999999999999999999999999999999999999999999995 589999999999999999999999443 34
Q ss_pred HHHHHhhCChhHHHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhh
Q 001671 825 IQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEH 904 (1034)
Q Consensus 825 IQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~ 904 (1034)
|.++++..+. .+..|...+...+ +.+++... ..-.|+.. |.--.+.+
T Consensus 287 l~kil~~~pe-kk~~I~~~l~~~I-------------~~v~eKg~---v~~tivHk----------------~mlEy~~~ 333 (652)
T KOG2050|consen 287 LDKILAEAPE-KKASILRHLKAII-------------TPVAEKGS---VDHTIVHK----------------LMLEYLTI 333 (652)
T ss_pred HHHHHHhChH-hHHHHHHHHHHHh-------------HHHhhcch---hHHHHHHH----------------HHHHHHHh
Confidence 4455554432 4444544443322 22222110 00111111 12223457
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCC
Q 001671 905 GKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCD 984 (1034)
Q Consensus 905 ~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~D 984 (1034)
++++++..+++.+...+..|.+++.||+|..+||+++++++|+.||+.|. +++..+++|+||+.|+..+|+++|
T Consensus 334 ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K------~h~~K~A~~~yGh~vlia~ldc~D 407 (652)
T KOG2050|consen 334 ADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMK------EHVEKIANDEYGHLVLIALLDCTD 407 (652)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHH------HHHHHHHhhccCceehhhhhcccc
Confidence 88899999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHH--HHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 001671 985 DQQ--LELILNRIKVHLNALKKYTYGKHIVARV 1015 (1034)
Q Consensus 985 d~q--Re~ILseLk~~L~eL~~s~yGk~IV~kl 1015 (1034)
|+. ++.|..++..++.+|..++||++|+..+
T Consensus 408 DT~l~kk~i~~e~~~el~~li~Dk~Grrv~lyl 440 (652)
T KOG2050|consen 408 DTKLLKKLIYDELKSELKSLISDKYGRRVILYL 440 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhh
Confidence 998 6899999999999999999999998544
No 9
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-29 Score=306.21 Aligned_cols=244 Identities=23% Similarity=0.394 Sum_probs=225.0
Q ss_pred hhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCChhHHHHHHHHHHHhHHHhhcCCCCch
Q 001671 780 SLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859 (1034)
Q Consensus 780 s~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~ 859 (1034)
+.|.+|||-||+.|+....++...+..|+...+.+|+.|.+||||+|||+|++.++++..++..+.++++.++.|+||||
T Consensus 447 ~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtr 526 (777)
T COG5099 447 CKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTR 526 (777)
T ss_pred cCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccH
Confidence 79999999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 001671 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLS 939 (1034)
Q Consensus 860 VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~ 939 (1034)
|+|++++...++.+-..|++++.+++..|++|++||+|+|++++....+....|++.+.+++.++++++|||+||++||+
T Consensus 527 v~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~Gs~vvq~~le 606 (777)
T COG5099 527 VLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYGSRVVQRCLE 606 (777)
T ss_pred HHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccccHHHHHHHH
Confidence 99999999988888778999999999999999999999999999888888899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHH-HHHHHhhCCCchHHHHHHHHH
Q 001671 940 FGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-HLNALKKYTYGKHIVARVEKL 1018 (1034)
Q Consensus 940 ~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~-~L~eL~~s~yGk~IV~klekl 1018 (1034)
.+..++.+.++++|+ .....|+.|+|||||||++|+.+-.+.++.|+..+.. ++.+|++++||..||+||.++
T Consensus 607 ~~~~~~~~~~~~~Ii------~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~ 680 (777)
T COG5099 607 NCNSEDKENLVEEII------SNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLSKRVVELSTHKFASNVVEKCIKY 680 (777)
T ss_pred hccHhHHHHHHHHHH------HHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 6788999999999999999999998888888888887 899999999999999888888
Q ss_pred Hhcccchhhcc
Q 001671 1019 VAAGERRISIM 1029 (1034)
Q Consensus 1019 i~~ge~r~~~~ 1029 (1034)
....++|-+|+
T Consensus 681 ~~~~~~~~ril 691 (777)
T COG5099 681 ASDSFKRSRIL 691 (777)
T ss_pred CCcchHHHHHH
Confidence 88888644443
No 10
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-26 Score=267.91 Aligned_cols=334 Identities=19% Similarity=0.295 Sum_probs=270.2
Q ss_pred ChhhhHHHHHhhhcC----ccccch-----HHHHHHHHHHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhcc
Q 001671 676 DESFASSLLDEFKSN----KTKCFE-----LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTD 746 (1034)
Q Consensus 676 d~~~~s~LLeEfk~n----eer~~~-----LseI~G~ivELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD 746 (1034)
...|.......|+.+ +|+.++ +++..|++++++++|.||.++|.++..++..|...+|.++.++++.+++|
T Consensus 64 ~~~YF~~a~~a~~~~~~~~eEr~~~f~n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~ 143 (650)
T KOG2188|consen 64 ELGYFRRAESAFKGGFERGEERNRMFVNSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQH 143 (650)
T ss_pred hhhHHHHHHHHhhcCccccccceeeeehhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHH
Confidence 456666777777665 444443 88999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhcccC--------------------------CHHHHHHHHHHHHHHHH-HhhhcccccHHHHHHHhhCCH-
Q 001671 747 VFGNYVIQKFFEHG--------------------------TASQVRELADQLTGHVL-TLSLQMYGCRVIQKAIEVVEL- 798 (1034)
Q Consensus 747 ~fGNhVIQKLLe~~--------------------------s~eqr~~Lle~L~g~V~-eLs~hkyGSrVVQklLe~~s~- 798 (1034)
+||+||+|++|++. -++....++.++.+++. .|+.|.||+||+++++.++..
T Consensus 144 r~gshVle~~L~~~a~~vg~e~~~~s~dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~ 223 (650)
T KOG2188|consen 144 RFGSHVLESALEKLAALVGQEAALLSEDEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSM 223 (650)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccchhhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 99999999999772 12334568888999998 999999999999999965430
Q ss_pred ---------------------------------------------------------HHHHHHHHH-------------H
Q 001671 799 ---------------------------------------------------------DQQTQMVKE-------------L 808 (1034)
Q Consensus 799 ---------------------------------------------------------eqr~~LV~E-------------L 808 (1034)
+-+...++. +
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~ 303 (650)
T KOG2188|consen 224 CPIAESEHKLALRKAAHRGMDDWDAVTTPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAF 303 (650)
T ss_pred cchhhhHHHHHHHHHhhccccchhhhhcChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000000 0
Q ss_pred -------------------------------HHHHHHHhcccCCchHHHHHHhhCChhHHHHHHHHHHHhHHHhhcCCCC
Q 001671 809 -------------------------------DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYG 857 (1034)
Q Consensus 809 -------------------------------~~~i~eL~kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyG 857 (1034)
.+-..++..|+.|+|++..+++.+++...+.+...|.+++..|+.|+.+
T Consensus 304 ~~~~~~~~~~~~~lv~~~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~a 383 (650)
T KOG2188|consen 304 DENKNDQFMESPRLVTKFQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIA 383 (650)
T ss_pred hhhcchhhhhhhhHHHhhhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 0011225678999999999999999999988888899999999999999
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHHHHh------------------------------------------------
Q 001671 858 CRVIQRVLEHCHDEKTQSIMMDEILQSVCMLA------------------------------------------------ 889 (1034)
Q Consensus 858 S~VIQklLe~~~d~~~r~~LleeIl~~l~~La------------------------------------------------ 889 (1034)
..+||++|++.++.+....|++++.+.+..|.
T Consensus 384 NF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL 463 (650)
T KOG2188|consen 384 NFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLL 463 (650)
T ss_pred cchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHH
Confidence 99999999999877777778888776543333
Q ss_pred -----------------cCcchhHHHHHHHhhCChhh---HHHHHHHHHHHHHHHhcCchHHHHHHHHHhc--CCHHHHH
Q 001671 890 -----------------QDQYGNYVVQHVLEHGKPHE---RSAIIKKLTGQIVQMSQQKFASNVIEKCLSF--GTPAERQ 947 (1034)
Q Consensus 890 -----------------~DqyGNyVVQ~LLe~~~~ke---R~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~--as~k~Rk 947 (1034)
.++.|+.++|+++.+.++.. -..+......+|.+++++++||||||.+|.. .+++.|+
T Consensus 464 ~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~ 543 (650)
T KOG2188|consen 464 FSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKE 543 (650)
T ss_pred HHhhhcccccccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHH
Confidence 12346667777777655432 2333444457999999999999999999997 7789999
Q ss_pred HHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 001671 948 ALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015 (1034)
Q Consensus 948 ~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~yGk~IV~kl 1015 (1034)
+||..+- ..+.+|+.+.||++|+.|||+.+++.+|+.|+++|...-+.++.++||+.|+.++
T Consensus 544 kLi~~l~------g~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL~~~~~~vk~s~~gk~v~~~~ 605 (650)
T KOG2188|consen 544 KLINILD------GSFVTLALSTFGSRVFEKCWEATDVLYKERIAKELVGIHNDVKSSKYGKFVMLNW 605 (650)
T ss_pred HHHHHhh------ccchheeecCcccHHHHHHHHHhhHHHHHHHHHHHHhhccccccCcchHHHHHhc
Confidence 9999887 4688999999999999999999999999999999999999999999999999765
No 11
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.1e-26 Score=266.63 Aligned_cols=279 Identities=20% Similarity=0.314 Sum_probs=255.1
Q ss_pred HHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHH---
Q 001671 734 QEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG--- 810 (1034)
Q Consensus 734 ~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~--- 810 (1034)
.++...+..+++|++|++++||+++.++......|+.++..++.+|..+++|..++|+++++++.+|+.+|+.-|..
T Consensus 213 ~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~ 292 (536)
T KOG2049|consen 213 VEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPR 292 (536)
T ss_pred hccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCcc
Confidence 34457788999999999999999999999999999999999999999999999999999999999999999988865
Q ss_pred HHHHHhcccCCchHHHHHHhhCCh-hHHHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHh
Q 001671 811 HIMRCVRDQNGNHVIQKCIECVPE-DAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLA 889 (1034)
Q Consensus 811 ~i~eL~kDq~GNhVIQKlLE~~p~-e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La 889 (1034)
.+.+++.+.||+.+||+++++... +++..+++++...++.|.++++|.+|||+||+... +...+.+.+.|.+.+..+|
T Consensus 293 ~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~-~~~~~~l~e~i~~~c~~iA 371 (536)
T KOG2049|consen 293 LFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFS-KEKNEFLYEAILRYCLDLA 371 (536)
T ss_pred ceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcC-chhhhHHHHHHHHHHHHHH
Confidence 588899999999999999998765 67889999999999999999999999999999874 4566789999999999999
Q ss_pred cCcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcC
Q 001671 890 QDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKD 969 (1034)
Q Consensus 890 ~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D 969 (1034)
.|++|+.|+|++|.+...+.|+.+++.+..+-..|+.+.||.+||+.+++.-.......|+..|. .+..+|+..
T Consensus 372 ~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~------g~~veLS~q 445 (536)
T KOG2049|consen 372 TDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLR------GHYVELSFQ 445 (536)
T ss_pred HhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhh------hHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877777788999998 579999999
Q ss_pred CchhHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHhhCCCchHHHHHHHHHHh
Q 001671 970 QFANYVVQKVLETCDDQQLELILNRIKV--HLNALKKYTYGKHIVARVEKLVA 1020 (1034)
Q Consensus 970 ~yGNyVVQkLLd~~Dd~qRe~ILseLk~--~L~eL~~s~yGk~IV~klekli~ 1020 (1034)
+||+|||+|||++..... +.|+.++.. ++..|..++||-.|+++-+..-.
T Consensus 446 KfgS~vVEk~L~~~~~~~-~~iV~ell~~~~~~~Ll~D~ygNyViq~AL~vtk 497 (536)
T KOG2049|consen 446 KFGSHVVEKLLKVRESSR-AQIVLELLSCDELDRLLRDPYGNYVIQTALRVTK 497 (536)
T ss_pred hhccHHHHHHHhcCcchh-hHHHHHHHccccHHHHhhCccchHHHHHHHHHhh
Confidence 999999999999987654 567777777 99999999999999977665543
No 12
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.9e-21 Score=222.08 Aligned_cols=290 Identities=16% Similarity=0.279 Sum_probs=219.1
Q ss_pred HHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCC------------
Q 001671 730 NMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVE------------ 797 (1034)
Q Consensus 730 ~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s------------ 797 (1034)
+-||+|..+..+.|+++++||+++|+++..++..|...++..+.+++..++.|+||+||+|++|+.+.
T Consensus 91 n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s~ 170 (650)
T KOG2188|consen 91 NSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLSE 170 (650)
T ss_pred hhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccch
Confidence 34999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred --------------HHHHHHHHHHHHHHHH-HHhcccCCchHHHHHHhhCChh---------------------------
Q 001671 798 --------------LDQQTQMVKELDGHIM-RCVRDQNGNHVIQKCIECVPED--------------------------- 835 (1034)
Q Consensus 798 --------------~eqr~~LV~EL~~~i~-eL~kDq~GNhVIQKlLE~~p~e--------------------------- 835 (1034)
++...-|+.++.+++. .++.+.+|+||++++|.++...
T Consensus 171 dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (650)
T KOG2188|consen 171 DEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSMCPIAESEHKLALRKAAHRGMDDWDAVT 250 (650)
T ss_pred hhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccCcchhhhHHHHHHHHHhhccccchhhhh
Confidence 2223456788888888 8999999999999988654110
Q ss_pred -------------------------------HHHHHHHHHHHh-------------------------------------
Q 001671 836 -------------------------------AIQFIVLTFYDQ------------------------------------- 847 (1034)
Q Consensus 836 -------------------------------~~q~Ii~~L~g~------------------------------------- 847 (1034)
....+++.....
T Consensus 251 ~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~ 330 (650)
T KOG2188|consen 251 TPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNEKDGL 330 (650)
T ss_pred cChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccccCcc
Confidence 000011110000
Q ss_pred -------HHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCC-hhhHHHHHHHHHH
Q 001671 848 -------VVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGK-PHERSAIIKKLTG 919 (1034)
Q Consensus 848 -------lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~-~keR~~IIe~L~g 919 (1034)
...+..|+.|+++++.+++.|... ....+...++..+..|+.++.+|++||++|++.+ .++...|++.|.+
T Consensus 331 ~~kE~~~~k~~l~d~tgSrllE~Imeva~~~-~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P 409 (650)
T KOG2188|consen 331 WGKERSFLKELLSDQTGSRLLEVIMEVASES-LLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAP 409 (650)
T ss_pred cccccHHHHHHHhcCcccHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhH
Confidence 112333778999999999988544 4466777788889999999999999999999988 8889999999988
Q ss_pred HHHHHhcCch--------------HH---HHHHHHHhc---CCHH-------------------------HH----HHHH
Q 001671 920 QIVQMSQQKF--------------AS---NVIEKCLSF---GTPA-------------------------ER----QALV 950 (1034)
Q Consensus 920 ~Iv~LS~~K~--------------GS---~VVEKcL~~---as~k-------------------------~R----k~II 950 (1034)
++-.|..+.+ |+ .+++.++.. +.++ .+ ..|+
T Consensus 410 ~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~ll 489 (650)
T KOG2188|consen 410 KLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLL 489 (650)
T ss_pred HHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHH
Confidence 7666654333 11 122222110 0011 11 2233
Q ss_pred HHHhcCCC-------------CchhHHHhhcCCchhHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 001671 951 NEMLGSIE-------------ENEPLQVMMKDQFANYVVQKVLET--CDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015 (1034)
Q Consensus 951 keLlg~~~-------------~~e~L~~La~D~yGNyVVQkLLd~--~Dd~qRe~ILseLk~~L~eL~~s~yGk~IV~kl 1015 (1034)
++|+.... ..++|.+|+++.+|++||+.+|.. .+...|++|+..+..+..+|+.+++|+||+++|
T Consensus 490 e~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~~~~GSrv~eK~ 569 (650)
T KOG2188|consen 490 EELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLALSTFGSRVFEKC 569 (650)
T ss_pred HHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchheeecCcccHHHHHH
Confidence 33332111 136799999999999999999999 578889999999999999999999999999999
Q ss_pred HHHHh
Q 001671 1016 EKLVA 1020 (1034)
Q Consensus 1016 ekli~ 1020 (1034)
++..+
T Consensus 570 wea~~ 574 (650)
T KOG2188|consen 570 WEATD 574 (650)
T ss_pred HHHhh
Confidence 99887
No 13
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.1e-19 Score=206.79 Aligned_cols=246 Identities=17% Similarity=0.279 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCChhHHHHHHHHHHH
Q 001671 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYD 846 (1034)
Q Consensus 767 ~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g 846 (1034)
+|++.+.+++.+|+.-+..+||||+|+.+++.++|.+|++||.+.+.+|+++.||-|+||++|..+.+..++.|++.|+|
T Consensus 157 el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~G 236 (652)
T KOG2050|consen 157 ELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRG 236 (652)
T ss_pred HHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 45556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhc
Q 001671 847 QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQ 926 (1034)
Q Consensus 847 ~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~ 926 (1034)
+++.|..|..|+.|++..+....+..||+.|+.|+++....++.+.. -..|..+++. .++.+..|++.|.+.|-.++.
T Consensus 237 hv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn-~~Tl~kil~~-~pekk~~I~~~l~~~I~~v~e 314 (652)
T KOG2050|consen 237 HVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSN-DKTLDKILAE-APEKKASILRHLKAIITPVAE 314 (652)
T ss_pred hHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccC-cccHHHHHHh-ChHhHHHHHHHHHHHhHHHhh
Confidence 99999999999999999999988899999999999999999999832 3345555553 366778899999888877764
Q ss_pred Cc-----hHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001671 927 QK-----FASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNA 1001 (1034)
Q Consensus 927 ~K-----~GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~e 1001 (1034)
.. .-..++...|..|+++.+..+++.+. +.+..|+..+-|+.|..+|+...+.+.|+.|++.|+.|+..
T Consensus 315 Kg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~------elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K 388 (652)
T KOG2050|consen 315 KGSVDHTIVHKLMLEYLTIADEEEKSELLELLK------ELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEK 388 (652)
T ss_pred cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------HHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 32 23567777788899999999998888 68999999999999999999999999999999999999999
Q ss_pred HhhCCCchHHHHHHHHHHh
Q 001671 1002 LKKYTYGKHIVARVEKLVA 1020 (1034)
Q Consensus 1002 L~~s~yGk~IV~klekli~ 1020 (1034)
++++.||+.|+-.+..|++
T Consensus 389 ~A~~~yGh~vlia~ldc~D 407 (652)
T KOG2050|consen 389 IANDEYGHLVLIALLDCTD 407 (652)
T ss_pred HHhhccCceehhhhhcccc
Confidence 9999999999866666653
No 14
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.64 E-value=3.3e-16 Score=185.13 Aligned_cols=297 Identities=19% Similarity=0.270 Sum_probs=234.8
Q ss_pred CHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHH-H
Q 001671 725 TTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQT-Q 803 (1034)
Q Consensus 725 s~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~-~ 803 (1034)
+..|++.+..+...+..+|..|-.||-|+||+|+++....+..+......++..+..|+||.++.||+++.+..|.+. .
T Consensus 533 S~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~ 612 (1007)
T KOG4574|consen 533 SAPEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKL 612 (1007)
T ss_pred cchhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhhe
Confidence 345677788888888899999999999999999999999999999999999999999999999999999988766544 4
Q ss_pred HHHHHHHHHHHHhcccCCchHHHHHHhhCChhHHHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcC-CHHHHHHHHHH-H
Q 001671 804 MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDE-I 881 (1034)
Q Consensus 804 LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~-d~~~r~~Llee-I 881 (1034)
++.-+++....++.|++||||+|.+|+..-+ ...||++.+..+++++.+..||++.+.+||+... ..+.+...++. |
T Consensus 613 iv~g~dpyc~~l~~dqfgnyvaqd~LkF~fp-~nsFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~i 691 (1007)
T KOG4574|consen 613 IVRGVDPYCTPLLNDQFGNYVAQDSLKFGFP-WNSFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCI 691 (1007)
T ss_pred eeeccCcchhhHHHHhhcceeeeeehhccCc-cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhh
Confidence 5577788888999999999999999998655 6788899999999999999999999999999743 22222322222 2
Q ss_pred HHHHHHHhcCcchhHHHHHHHhhCChhhH-HHHHHHHHHHHHHHhcCchHHHHHHHHHhcCC-HHHHHHHHHHHhcCCCC
Q 001671 882 LQSVCMLAQDQYGNYVVQHVLEHGKPHER-SAIIKKLTGQIVQMSQQKFASNVIEKCLSFGT-PAERQALVNEMLGSIEE 959 (1034)
Q Consensus 882 l~~l~~La~DqyGNyVVQ~LLe~~~~keR-~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~as-~k~Rk~IIkeLlg~~~~ 959 (1034)
......++.+..|-..|.++|+.+..-.| ..++..+.++++.+|+||.|+-+|.|+++++. +..|++|++.|+.....
T Consensus 692 Is~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~n~ 771 (1007)
T KOG4574|consen 692 ISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLRNF 771 (1007)
T ss_pred hhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHHhhcccc
Confidence 22357788999999999999997653333 45567788999999999999999999999865 45599999999843211
Q ss_pred ------------------------chhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 001671 960 ------------------------NEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARV 1015 (1034)
Q Consensus 960 ------------------------~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~yGk~IV~kl 1015 (1034)
.+.+.....|+|+.+|.|.|+...-...- . +++|...+.-++.+++|++-+..|
T Consensus 772 kd~~lt~Vl~~~~~gpmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~na-r-v~~LleevgliSasksgs~s~q~~ 849 (1007)
T KOG4574|consen 772 KDSALTEVLTEANYGPMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVSNA-R-VQRLLEEVGLISASKSGSQSIQMH 849 (1007)
T ss_pred ccchhhhhhhhhccccceeeeeeccccchHHHHHHHHHHHHHHHHhcCCccHH-H-HHHHHHHHhhhccccchhHHHHhh
Confidence 12255667889999999999987633221 1 145555667778889999988777
Q ss_pred HHHHhcccc
Q 001671 1016 EKLVAAGER 1024 (1034)
Q Consensus 1016 ekli~~ge~ 1024 (1034)
.+....+++
T Consensus 850 ~sss~~~~~ 858 (1007)
T KOG4574|consen 850 ISSSKTPFA 858 (1007)
T ss_pred hccCCcccc
Confidence 666665554
No 15
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.25 E-value=2.6e-11 Score=144.46 Aligned_cols=212 Identities=17% Similarity=0.248 Sum_probs=108.0
Q ss_pred HHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccC-CHHHHHHHHHHHHHHHHHhhhcc
Q 001671 705 VEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHG-TASQVRELADQLTGHVLTLSLQM 783 (1034)
Q Consensus 705 vELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~-s~eqr~~Lle~L~g~V~eLs~hk 783 (1034)
.|+..|-.|.-|+|+..+.+++--++...+.....+.....|+||...+||+|+++ .+.+.+.++.-+...-..+..+.
T Consensus 549 ~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~g~dpyc~~l~~dq 628 (1007)
T KOG4574|consen 549 PELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVRGVDPYCTPLLNDQ 628 (1007)
T ss_pred CcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhheeeeccCcchhhHHHHh
Confidence 44555566666777777777666666666666666666666666666666666665 33355555555555556666666
Q ss_pred cccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCCh--hHHHHHHHHHH-HhHHHhhcCCCCchH
Q 001671 784 YGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPE--DAIQFIVLTFY-DQVVTLSTHPYGCRV 860 (1034)
Q Consensus 784 yGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~--e~~q~Ii~~L~-g~lv~Ls~hkyGS~V 860 (1034)
||++|+|.+|...-+.- .-+++++..++..++...||..-+.+|||.... +.-.+.++.+. -..-.++++--|-..
T Consensus 629 fgnyvaqd~LkF~fp~n-sFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iIs~ss~latnsng~ll 707 (1007)
T KOG4574|consen 629 FGNYVAQDSLKFGFPWN-SFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCIISKSSYLATNSNGLLL 707 (1007)
T ss_pred hcceeeeeehhccCccc-hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhhhchhhhhhcCcccee
Confidence 66666666665443221 112455555666666666666666666654321 11111111111 112223344444444
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhh-HHHHHHHH
Q 001671 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE-RSAIIKKL 917 (1034)
Q Consensus 861 IQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~ke-R~~IIe~L 917 (1034)
|-.+++.+..+.+...++..+++++++|+.|.-|+-+|+++++++.+.+ |+.|++.|
T Consensus 708 vtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hl 765 (1007)
T KOG4574|consen 708 VTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHL 765 (1007)
T ss_pred eeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHH
Confidence 4444444443333333444444444445555555555555554433222 44444443
No 16
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.84 E-value=5.9e-06 Score=63.55 Aligned_cols=33 Identities=36% Similarity=0.603 Sum_probs=17.7
Q ss_pred HHHhHHhhhccccccchhhhhcccCCHHHHHHH
Q 001671 736 IMPQALSLMTDVFGNYVIQKFFEHGTASQVREL 768 (1034)
Q Consensus 736 I~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~L 768 (1034)
|.+++.+|++|+||||||||+|++++++++..|
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~i 34 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLI 34 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhh
Confidence 345555555555555555555555555554443
No 17
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.61 E-value=7.2e-05 Score=57.54 Aligned_cols=32 Identities=50% Similarity=0.670 Sum_probs=29.3
Q ss_pred hhHHHhhcCCchhHHHHHHHhcCCHHHHHHHH
Q 001671 961 EPLQVMMKDQFANYVVQKVLETCDDQQLELIL 992 (1034)
Q Consensus 961 e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~IL 992 (1034)
+++..|++|+|||||||++|+.+++++++.|+
T Consensus 4 ~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 4 GNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp TTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 57899999999999999999999999888774
No 18
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.46 E-value=4.6e-05 Score=57.59 Aligned_cols=26 Identities=46% Similarity=0.727 Sum_probs=10.3
Q ss_pred hHHhhhccccccchhhhhcccCCHHH
Q 001671 739 QALSLMTDVFGNYVIQKFFEHGTASQ 764 (1034)
Q Consensus 739 ~~leLmtD~fGNhVIQKLLe~~s~eq 764 (1034)
++.+||+|+||||||||+|+++++++
T Consensus 5 ~~~~l~~~~~g~~viqk~l~~~~~~~ 30 (36)
T smart00025 5 HLLELSKDQYGNRVVQKLLEHASESQ 30 (36)
T ss_pred HHHHHHhcchhhHHHHHHHHHCCHHH
Confidence 33334444444444444444433333
No 19
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.24 E-value=0.00021 Score=53.94 Aligned_cols=34 Identities=41% Similarity=0.780 Sum_probs=31.6
Q ss_pred HHHHHHHHhhCCCcCHHHHHhhhcCCHHHHHHHH
Q 001671 700 IAGHVVEFSADQYGSRFIQQKLETATTEEKNMVF 733 (1034)
Q Consensus 700 I~G~ivELa~Dq~GSRvLQklLe~as~Eqr~~If 733 (1034)
+.+++.+++.|++||++||++|+.++.+++..|+
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 4689999999999999999999999999988876
No 20
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=95.14 E-value=5.4 Score=46.12 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=60.8
Q ss_pred CcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCchhHHH
Q 001671 891 DQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFG-----TPAERQALVNEMLGSIEENEPLQV 965 (1034)
Q Consensus 891 DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~a-----s~k~Rk~IIkeLlg~~~~~e~L~~ 965 (1034)
..-|-..+-.||...+....+.|++.|...=.+ ++-.|-+++|.|. +++....|++++- .....
T Consensus 200 ~~~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~-----~a~~Ir~~mF~Fedl~~l~~~~l~~ll~~v~------~~~L~ 268 (339)
T PRK05686 200 KMGGVKTVAEILNNLDRQTEKTILESLEEEDPE-----LAEKIKDLMFVFEDLVDLDDRSIQRLLREVD------NDVLA 268 (339)
T ss_pred ccCcHHHHHHHHhcCCchHHHHHHHHHHhhCHH-----HHHHHHHHhcCHHHHhcCCHHHHHHHHHhCC------HHHHH
Confidence 345677788888888888778888888754333 3356666666653 2333444444432 12222
Q ss_pred hhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHH----HHHHhhCCCchHHHHHHHHHHhccc
Q 001671 966 MMKDQFANYVVQKVLETCDDQQLELILNRIKVH----LNALKKYTYGKHIVARVEKLVAAGE 1023 (1034)
Q Consensus 966 La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~----L~eL~~s~yGk~IV~klekli~~ge 1023 (1034)
++..--..-+.+++|.......++.|-+++... +.++. .-=+.|+..+.++...|+
T Consensus 269 ~ALkga~~~~~~~il~nmS~R~a~~l~eel~~~g~v~~~dve--~Aq~~I~~~~r~l~~~G~ 328 (339)
T PRK05686 269 LALKGASEELREKFLSNMSKRAAEMLREDLEALGPVRLSDVE--EAQKKIVQIARRLAEAGE 328 (339)
T ss_pred HHHCCCCHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 222223333444444444444444443333210 00000 111467777777777665
No 21
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=89.84 E-value=45 Score=38.79 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=28.8
Q ss_pred chhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhc
Q 001671 893 YGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSF 940 (1034)
Q Consensus 893 yGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~ 940 (1034)
-|--.+..||...+....+.|++.|...=.+ ++-.|-+++|.|
T Consensus 199 gG~~~~a~ILN~~~~~~~~~il~~L~~~dp~-----la~~Ir~~mF~F 241 (338)
T TIGR00207 199 GGVRAVAEIINLMDRKTEKTIITSLEEFDPE-----LAEEIKKEMFVF 241 (338)
T ss_pred ChHHHHHHHHHhCCchHHHHHHHHHHHhCHH-----HHHHHHHHccCH
Confidence 4667788888888877777888877653333 334566666655
No 22
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=89.08 E-value=50 Score=38.29 Aligned_cols=83 Identities=8% Similarity=0.111 Sum_probs=42.9
Q ss_pred CHHHHHhhhc-CCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHH
Q 001671 714 SRFIQQKLET-ATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKA 792 (1034)
Q Consensus 714 SRvLQklLe~-as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQkl 792 (1034)
-.++..+|.. ...++-+.|++++.+.-. ..+++.|. ...++....++....+++..++...--.-+-.++
T Consensus 82 ~~~~~~iL~~~l~~~~a~~il~~i~~~~~--------~~~fe~L~-~ld~~~l~~lL~~EhpqtiA~iLs~l~~~~aa~v 152 (339)
T PRK05686 82 IDYARSLLEKALGEEKADSILERILESLG--------TSGFDFLR-KMDPQQLANFIRNEHPQTIALILSYLKPDQAAEI 152 (339)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHhcccc--------CchHHHHh-cCCHHHHHHHHHhcCHHHHHHHHhCCCHHHHHHH
Confidence 3456666664 455555566666543211 13554333 3455566666666666666665555555555555
Q ss_pred HhhCCHHHHHHHH
Q 001671 793 IEVVELDQQTQMV 805 (1034)
Q Consensus 793 Le~~s~eqr~~LV 805 (1034)
|..++.+.+..++
T Consensus 153 L~~l~~~~~~~v~ 165 (339)
T PRK05686 153 LSLLPEELRADVM 165 (339)
T ss_pred HHhCCHHHHHHHH
Confidence 5555544444443
No 23
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=84.20 E-value=82 Score=35.86 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcC--chHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 001671 907 PHERSAIIKKLTGQIVQMSQQ--KFASNVIEKCLSFGTPAERQALVNEMLG 955 (1034)
Q Consensus 907 ~keR~~IIe~L~g~Iv~LS~~--K~GS~VVEKcL~~as~k~Rk~IIkeLlg 955 (1034)
++.+..|.+.+...+..+... -.-..+|+.-+..-+.++-..++....+
T Consensus 289 ~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l~~~~~~~l~~~i~~~v~ 339 (367)
T PF04286_consen 289 PELREKINRFIENLLERIVESNHIDIGEIVEEKLNSLDDEELEELIESKVG 339 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555566666666666665554 2223444444444455555555555553
No 24
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=81.36 E-value=59 Score=38.14 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 001671 932 NVIEKCLSFGTPAERQAL 949 (1034)
Q Consensus 932 ~VVEKcL~~as~k~Rk~I 949 (1034)
.|+|+||...++..|..-
T Consensus 277 ~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 277 KVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHHHHhcCCCHHHHHHH
Confidence 689999999887776543
No 25
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=80.97 E-value=5.5 Score=40.95 Aligned_cols=20 Identities=10% Similarity=0.371 Sum_probs=16.4
Q ss_pred HhhcCCchhHHHHHHHhcCC
Q 001671 965 VMMKDQFANYVVQKVLETCD 984 (1034)
Q Consensus 965 ~La~D~yGNyVVQkLLd~~D 984 (1034)
.++.+++|++++.+++....
T Consensus 115 H~i~~p~~~r~lK~Liq~~~ 134 (148)
T PF08144_consen 115 HLIEHPFGHRMLKKLIQGDK 134 (148)
T ss_pred chhcCchHHHHHHHHHHCCC
Confidence 56789999999999987653
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=78.32 E-value=1.7e+02 Score=35.77 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=42.0
Q ss_pred hhHHHHHhhhcCccccchHHHHHHHHHHHh-hCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhh---hccccccchhh
Q 001671 679 FASSLLDEFKSNKTKCFELSEIAGHVVEFS-ADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSL---MTDVFGNYVIQ 754 (1034)
Q Consensus 679 ~~s~LLeEfk~neer~~~LseI~G~ivELa-~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leL---mtD~fGNhVIQ 754 (1034)
+...+++++.....+.-.|.+++..+.... .+..-..++=.+|...+.++.+.+.+-|..-+..+ ...+..--+++
T Consensus 4 ~~~~~l~~l~~~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~ 83 (503)
T PF10508_consen 4 WINELLEELSSKAERLEALPELKTELSSSPFLERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQ 83 (503)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 455667766665544444555554432211 11222223444556566666554442222111110 10222223455
Q ss_pred hhcccCCHHHHHHHHHHH
Q 001671 755 KFFEHGTASQVRELADQL 772 (1034)
Q Consensus 755 KLLe~~s~eqr~~Lle~L 772 (1034)
+.+.+..+..|...+..|
T Consensus 84 ~gL~h~~~~Vr~l~l~~l 101 (503)
T PF10508_consen 84 RGLTHPSPKVRRLALKQL 101 (503)
T ss_pred HHhcCCCHHHHHHHHHHH
Confidence 667777766655555543
No 27
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=77.01 E-value=53 Score=38.52 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcC
Q 001671 896 YVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKD 969 (1034)
Q Consensus 896 yVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D 969 (1034)
.++..++.. ..+.|..++..+.+--..+..++.-++.+..++....... .+++.++ +.+.+|+.+
T Consensus 179 ~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~------~~L~~mi~~ 243 (372)
T PF12231_consen 179 ILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYC------ERLKEMIKS 243 (372)
T ss_pred HHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHH------HHHHHHHhC
Confidence 555555543 3444555555554444555667777788877777543333 5555555 456666666
No 28
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=75.17 E-value=1.7e+02 Score=34.05 Aligned_cols=18 Identities=44% Similarity=0.591 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhcccchh
Q 001671 1009 KHIVARVEKLVAAGERRI 1026 (1034)
Q Consensus 1009 k~IV~klekli~~ge~r~ 1026 (1034)
+.|+..+.++...|+=.+
T Consensus 308 ~~Iv~~~r~L~~~G~I~l 325 (334)
T PRK07194 308 KEIMALVRELAEAGEIEL 325 (334)
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 467777777777765433
No 29
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=73.32 E-value=12 Score=38.60 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=36.9
Q ss_pred hhHHHhhcCCchhHHHHHHHhcCCHHH---HHHHHHHHHHH--------HHHHhhCCCchHHHHHHHHHHhcc
Q 001671 961 EPLQVMMKDQFANYVVQKVLETCDDQQ---LELILNRIKVH--------LNALKKYTYGKHIVARVEKLVAAG 1022 (1034)
Q Consensus 961 e~L~~La~D~yGNyVVQkLLd~~Dd~q---Re~ILseLk~~--------L~eL~~s~yGk~IV~klekli~~g 1022 (1034)
++...|+.+.+|..||..+|..++... .+.|++.+... -.-+..+++|++++ .+|+..+
T Consensus 64 ~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~l---K~Liq~~ 133 (148)
T PF08144_consen 64 ENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRML---KKLIQGD 133 (148)
T ss_pred HhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHH---HHHHHCC
Confidence 345678888888888888887774332 23454444432 12356889999988 4445444
No 30
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.01 E-value=2.5e+02 Score=36.00 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=27.4
Q ss_pred HHHhHHhhhccccccchhhhhcccC------CHHHHHHHHHHHH
Q 001671 736 IMPQALSLMTDVFGNYVIQKFFEHG------TASQVRELADQLT 773 (1034)
Q Consensus 736 I~p~~leLmtD~fGNhVIQKLLe~~------s~eqr~~Lle~L~ 773 (1034)
+.|.|.+||++.--|.++-|+|+.- .|...+.+++-|.
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt 262 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPIT 262 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHH
Confidence 5578999999999999999998763 3444444444443
No 31
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=70.89 E-value=2.1e+02 Score=33.33 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=13.2
Q ss_pred hhcCCHHHHHHHHHHHHHhHHhh
Q 001671 721 LETATTEEKNMVFQEIMPQALSL 743 (1034)
Q Consensus 721 Le~as~Eqr~~If~EI~p~~leL 743 (1034)
|..-+.++.+.|+++|...+..-
T Consensus 49 l~~v~~~~~~~vl~eF~~~~~~~ 71 (338)
T TIGR00207 49 VTQIDNQQKDDVLEEFEQIAEAQ 71 (338)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 34456666666666666555443
No 32
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.69 E-value=1.3e+02 Score=38.77 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=40.0
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHHHH----hcCcchhHHHHHHHhhCChhhHHHHHHHHHHHHHH
Q 001671 858 CRVIQRVLEHCHDEKTQSIMMDEILQSVCML----AQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQ 923 (1034)
Q Consensus 858 S~VIQklLe~~~d~~~r~~LleeIl~~l~~L----a~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~ 923 (1034)
-++++.+|+..........-+.-|++.+..| +.|.+|-|++++++++-++.+-..-++.+.+-+.+
T Consensus 701 vrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~ 770 (960)
T KOG1992|consen 701 VRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQ 770 (960)
T ss_pred HHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHH
Confidence 4678888877543222122244555555544 47899999999999987766544444444443333
No 33
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=67.73 E-value=2.5e+02 Score=32.94 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=27.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCC--------------CchHHHHHHHHHHhccc
Q 001671 972 ANYVVQKVLETCDDQQLELILNRIKVHLNALKKYT--------------YGKHIVARVEKLVAAGE 1023 (1034)
Q Consensus 972 GNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~--------------yGk~IV~klekli~~ge 1023 (1034)
.+.++...|..+++..|++|++.+-+...++...- --+.|+..+.++...|+
T Consensus 263 ~~~~La~aLkg~~~~lrekilsnmskR~~e~i~~el~~~gpi~~~dve~aq~~il~~~r~l~~~G~ 328 (339)
T COG1536 263 DKEDLAIALKGASEELREKILSNMSKRAAEMLKEELEFLGPVRLSDVETAQKAILNIVRRLAESGE 328 (339)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHhccHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45555666666666666666665544433333221 12456666666666554
No 34
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=65.91 E-value=7.8 Score=49.84 Aligned_cols=93 Identities=11% Similarity=0.214 Sum_probs=57.7
Q ss_pred HHHHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhH-----------------Hhhh----ccccccchhhhhcccCC
Q 001671 703 HVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA-----------------LSLM----TDVFGNYVIQKFFEHGT 761 (1034)
Q Consensus 703 ~ivELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~-----------------leLm----tD~fGNhVIQKLLe~~s 761 (1034)
.++.|..=..|=++|-.+|...+.+++..|+..|.-++ ..++ .|.|-..|+..|+.+..
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 45556666667778888888888888888888888777 2222 34566666666665554
Q ss_pred HHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHhh
Q 001671 762 ASQVRELADQL-----TGHVLTLSLQMYGCRVIQKAIEV 795 (1034)
Q Consensus 762 ~eqr~~Lle~L-----~g~V~eLs~hkyGSrVVQklLe~ 795 (1034)
+.....|+..+ ..++..+++.++|.-+|-.+|..
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsR 694 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSR 694 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHH
Confidence 44444333322 24667777888888887777754
No 35
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=65.61 E-value=92 Score=38.73 Aligned_cols=223 Identities=12% Similarity=0.097 Sum_probs=90.9
Q ss_pred HHHHhhC--CCcCHHH---HHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhc-ccCCHHHHHHHHHHHHHHHH
Q 001671 704 VVEFSAD--QYGSRFI---QQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFF-EHGTASQVRELADQLTGHVL 777 (1034)
Q Consensus 704 ivELa~D--q~GSRvL---QklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLL-e~~s~eqr~~Lle~L~g~V~ 777 (1034)
+..+|+| .+-+|+. =++|......|+..|=+.+...+..=.....+...-|-.- +.+.+..|+.+++.|..++.
T Consensus 83 lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 83 LPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp GGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 6677776 3556654 4466666667777666666554332222222221111110 23445567777777777666
Q ss_pred Hhhhcccc---------cHHHHHHHhhCCHHHHHHHHHHHHH-HHHHHhcccCCchHHHHH----------HhhCChhHH
Q 001671 778 TLSLQMYG---------CRVIQKAIEVVELDQQTQMVKELDG-HIMRCVRDQNGNHVIQKC----------IECVPEDAI 837 (1034)
Q Consensus 778 eLs~hkyG---------SrVVQklLe~~s~eqr~~LV~EL~~-~i~eL~kDq~GNhVIQKl----------LE~~p~e~~ 837 (1034)
.|...-.- ..+|.++|+-++.++..-+++-|.. .+.......-|-..+-.+ +....++.+
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~I 242 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESI 242 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHH
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHH
Confidence 55433322 3345555555566666555543321 000000000010011111 122234566
Q ss_pred HHHHHHHHHhHHHhhcCCCCchHHHHHHhhc----C--CHHHHHHHHHHHHHHHHHHhcC----cchhHHHHHHHhhCC-
Q 001671 838 QFIVLTFYDQVVTLSTHPYGCRVIQRVLEHC----H--DEKTQSIMMDEILQSVCMLAQD----QYGNYVVQHVLEHGK- 906 (1034)
Q Consensus 838 q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~----~--d~~~r~~LleeIl~~l~~La~D----qyGNyVVQ~LLe~~~- 906 (1034)
+.++.-+...+.-.+....++..+.-+.+.. . .+..+-.++..+.+- ...+.+ +.=..|.+.++++-+
T Consensus 243 drli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~-s~~~~~~d~~~~L~~i~~~L~~ymP~ 321 (556)
T PF05918_consen 243 DRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAEL-SPFCGAQDARQLLPSIFQLLKKYMPS 321 (556)
T ss_dssp HHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHH-HTT----THHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHH-cCCCCcccHHHHHHHHHHHHHHhCCC
Confidence 6666666655555566666666665554432 1 122222333333221 111111 122345566655432
Q ss_pred ----hhhHHHHHHHHHHHHHHHhcC
Q 001671 907 ----PHERSAIIKKLTGQIVQMSQQ 927 (1034)
Q Consensus 907 ----~keR~~IIe~L~g~Iv~LS~~ 927 (1034)
++..-..++.|.-.+..|+..
T Consensus 322 ~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 322 KKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp --------HHHHHHHHHHHHHHHTT
T ss_pred CCCCCcccchHhhHHHHHHHHHhhh
Confidence 344456777777777777654
No 36
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.26 E-value=3.8e+02 Score=33.36 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHHHHHHH
Q 001671 729 KNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKE 807 (1034)
Q Consensus 729 r~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~E 807 (1034)
++.|+.-...-+..++....---.+-.++..-....+..|++.++.++..+..++.+-+-+-+++..-..++.-.+++.
T Consensus 45 k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en~n~~l~~lWer 123 (711)
T COG1747 45 KNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKENGNEQLYSLWER 123 (711)
T ss_pred hhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3445554455555566555544455566666667778888888888888888888777766666644455665556553
No 37
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=58.90 E-value=3.4e+02 Score=31.44 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=11.3
Q ss_pred ccHHHHHHHhhCCHHHHHHHHHH
Q 001671 785 GCRVIQKAIEVVELDQQTQMVKE 807 (1034)
Q Consensus 785 GSrVVQklLe~~s~eqr~~LV~E 807 (1034)
....+.++++..+++-...++-.
T Consensus 42 ~e~AL~kAi~SgD~DLi~~vLl~ 64 (319)
T PF04840_consen 42 DELALNKAIESGDTDLIYLVLLH 64 (319)
T ss_pred hHHHHHHHHHcCCccHHHHHHHH
Confidence 33445556666555544443333
No 38
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=58.06 E-value=2.5e+02 Score=31.87 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=38.6
Q ss_pred chHHHHHH-hhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCC---hhhHHHHHHHHHHHHHHHhcCchHHHH
Q 001671 858 CRVIQRVL-EHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGK---PHERSAIIKKLTGQIVQMSQQKFASNV 933 (1034)
Q Consensus 858 S~VIQklL-e~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~---~keR~~IIe~L~g~Iv~LS~~K~GS~V 933 (1034)
|.+|-+++ +.|-+++.+..++..++ ++.-+..---|+|.+++... ++....+++.|.++-..++.+.--+++
T Consensus 145 ~eLl~rlvk~~~l~p~~~~l~l~~~L----~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~skSlkFakL 220 (263)
T PF11510_consen 145 CELLCRLVKKECLEPDHRLLLLRQIL----ELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQFSKSLKFAKL 220 (263)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHH----HS---HHHHHHHHHHHTT-----HHHHHHHHHHHH--------SHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH----hCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhcchHHHHH
Confidence 45677777 66667777766666655 34445555678999998653 333444566666555555555444555
Q ss_pred HHHHH
Q 001671 934 IEKCL 938 (1034)
Q Consensus 934 VEKcL 938 (1034)
+-.++
T Consensus 221 lLtvl 225 (263)
T PF11510_consen 221 LLTVL 225 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=55.71 E-value=4.3e+02 Score=31.65 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 001671 767 ELADQLTGHVLTLSLQMYG 785 (1034)
Q Consensus 767 ~Lle~L~g~V~eLs~hkyG 785 (1034)
++++.+...+..+..|+..
T Consensus 110 ~~~~~l~~~v~~ll~~~~~ 128 (526)
T PF01602_consen 110 EMAEPLIPDVIKLLSDPSP 128 (526)
T ss_dssp HHHHHHHHHHHHHHHSSSH
T ss_pred chhhHHHHHHHHHhcCCch
Confidence 3445555566666666554
No 40
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=55.26 E-value=3.1e+02 Score=34.22 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=8.5
Q ss_pred HHHHHh--hCCHHHHHHHHHH
Q 001671 789 IQKAIE--VVELDQQTQMVKE 807 (1034)
Q Consensus 789 VQklLe--~~s~eqr~~LV~E 807 (1034)
+||+|+ .++.++...+++.
T Consensus 92 ~~k~l~~~~l~~~~~~~~l~~ 112 (757)
T KOG4368|consen 92 MQKLLEETQLDMNEFDNLLQP 112 (757)
T ss_pred HHHHHHhccCCHHHHHHHHHH
Confidence 455554 2344444444443
No 41
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=53.91 E-value=2.2e+02 Score=39.09 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhc-----------CCCCchhHHHhhcCCchhHHHHHHHh
Q 001671 913 IIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLG-----------SIEENEPLQVMMKDQFANYVVQKVLE 981 (1034)
Q Consensus 913 IIe~L~g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg-----------~~~~~e~L~~La~D~yGNyVVQkLLd 981 (1034)
+.+.-..-+.-+..+.||-..|...|.....++|+..+++++. ..++++......-+-+.+-||.-++.
T Consensus 274 l~~~q~~lL~~vL~Qp~srd~v~~~l~~~~~k~~~~~~ee~l~~li~~aM~~~e~~~~~~~~~~~~W~hls~~viy~~l~ 353 (1341)
T PF11573_consen 274 LLEPQTRLLYYVLRQPYSRDMVCSMLGLQQQKQRCPALEELLVDLIIEAMEESESEDENEPINRWQWLHLSSQVIYFMLF 353 (1341)
T ss_pred HcchHHHHHHHHHcCcchHHHHHHHhcccccCccchHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Confidence 3333334455566778888888888776655555554444431 11222334444444555556665555
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Q 001671 982 TCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLV 1019 (1034)
Q Consensus 982 ~~Dd~qRe~ILseLk~~L~eL~~s~yGk~IV~klekli 1019 (1034)
.+- ....|++.|...+.. ..++.||.=|.++.-=+
T Consensus 354 ~~i--~F~~~v~~L~~kL~~-~~~~r~Rd~vMWvllQ~ 388 (1341)
T PF11573_consen 354 QFI--SFPDFVKKLHEKLTG-RNYRRGRDHVMWVLLQF 388 (1341)
T ss_pred hcC--CHHHHHHHHHHHHhc-CceeeccchhHHHHHHH
Confidence 441 134567777766666 56777776665554333
No 42
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.09 E-value=6e+02 Score=34.39 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.0
Q ss_pred hHHHhhcCCchhHHHHHHHh
Q 001671 962 PLQVMMKDQFANYVVQKVLE 981 (1034)
Q Consensus 962 ~L~~La~D~yGNyVVQkLLd 981 (1034)
+|.+.+.-+||--.|+.++.
T Consensus 891 ~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 891 LLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHhCHHHHHhhCH
Confidence 46777788888888888887
No 43
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=50.71 E-value=5.3e+02 Score=35.13 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=48.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhccc---------CCHHHHHHHHHHHHHHHHHhhhcccc
Q 001671 715 RFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH---------GTASQVRELADQLTGHVLTLSLQMYG 785 (1034)
Q Consensus 715 RvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~---------~s~eqr~~Lle~L~g~V~eLs~hkyG 785 (1034)
++||.+=.+.+.| ..++.|.|.++.|..|++.---++.+... .++..-..+.+.|.+++..|..+.-.
T Consensus 445 eLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~ 521 (1431)
T KOG1240|consen 445 ELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSA 521 (1431)
T ss_pred HHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCcc
Confidence 4555555555554 45678889999999998886655555422 24455556677788888888888655
Q ss_pred cHHHH
Q 001671 786 CRVIQ 790 (1034)
Q Consensus 786 SrVVQ 790 (1034)
.+|--
T Consensus 522 ~~vRi 526 (1431)
T KOG1240|consen 522 QIVRI 526 (1431)
T ss_pred ceehh
Confidence 55533
No 44
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=49.62 E-value=23 Score=45.66 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=32.8
Q ss_pred hHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHh
Q 001671 739 QALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTL 779 (1034)
Q Consensus 739 ~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eL 779 (1034)
.|+.++.-.=|..+|-++|.+.+.+++..|+..|..++..|
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l 616 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQL 616 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH---
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhh
Confidence 47778888889999999999999999999999998888443
No 45
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=49.24 E-value=5.2e+02 Score=30.70 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=23.7
Q ss_pred ccHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 001671 785 GCRVIQKAIEVVELDQQTQMVKELDGHIM 813 (1034)
Q Consensus 785 GSrVVQklLe~~s~eqr~~LV~EL~~~i~ 813 (1034)
.++|+..++..++.+++.++++++..-+.
T Consensus 117 ~~~l~~~iv~~l~~~~q~~~~~~~~~lf~ 145 (415)
T PF12460_consen 117 LSRLINLIVRSLSPEKQQEILDELYSLFL 145 (415)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 36888889999999999999888776554
No 46
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.65 E-value=2.5e+02 Score=28.69 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCCc
Q 001671 930 ASNVIEKCLSFGTPAERQALV-NEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYG 1008 (1034)
Q Consensus 930 GS~VVEKcL~~as~k~Rk~II-keLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~yG 1008 (1034)
+=.+++.|.+.|.......|. ++|+ +.+.+|+.+.|= -...+...+++|++-|..=-.++...+.
T Consensus 58 AL~LLe~~vkNCG~~fh~evas~~Fl------~el~kl~~~k~~-------~~~~~~~Vk~kil~li~~W~~~f~~~p~- 123 (139)
T cd03567 58 ALTVLEACMKNCGERFHSEVGKFRFL------NELIKLVSPKYL-------GSRTSEKVKTKIIELLYSWTLELPHEPK- 123 (139)
T ss_pred HHHHHHHHHHHcCHHHHHHHHhHHHH------HHHHHHhccccC-------CCCCCHHHHHHHHHHHHHHHHHhcccch-
Confidence 345788888888777766655 5555 335566654320 0112445566666666555555554443
Q ss_pred hHHHHHHHHHHhcc
Q 001671 1009 KHIVARVEKLVAAG 1022 (1034)
Q Consensus 1009 k~IV~klekli~~g 1022 (1034)
+.+.-..|...|
T Consensus 124 --~~~~Y~~Lk~~G 135 (139)
T cd03567 124 --IKEAYDMLKKQG 135 (139)
T ss_pred --HHHHHHHHHHCC
Confidence 444444444443
No 47
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=48.16 E-value=3.8e+02 Score=33.31 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=32.5
Q ss_pred cHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHh--cccCCchHHHHHHhhCChhHHHHHHHHHHHhHHH
Q 001671 786 CRVIQKAIEVVE--LDQQTQMVKELDGHIMRCV--RDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVT 850 (1034)
Q Consensus 786 SrVVQklLe~~s--~eqr~~LV~EL~~~i~eL~--kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~ 850 (1034)
..||..+++.+. ++|...++.-+...+-..- ...-++|||-++=...|. ....|++.+..-++.
T Consensus 209 ~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~-mk~VV~d~Iedf~f~ 276 (821)
T COG5593 209 KQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPG-MKEVVLDGIEDFYFK 276 (821)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCc-hhHHHHhhhhHheec
Confidence 445555655443 4555555555444332210 112467888876555443 555566665544443
No 48
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=48.11 E-value=4.5e+02 Score=29.67 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=40.4
Q ss_pred CCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCC---hhhHHHHHHHHHHHHHHHhcC
Q 001671 855 PYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGK---PHERSAIIKKLTGQIVQMSQQ 927 (1034)
Q Consensus 855 kyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~---~keR~~IIe~L~g~Iv~LS~~ 927 (1034)
.+=+.+|.++++.|..++....++..+... ..+.-+..---|+|.+|.... ++....++..|..+...++.+
T Consensus 133 ~~q~ell~rlike~~~~~~~~l~~~q~L~~-~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~skS 207 (254)
T cd07439 133 PFQAELLCRLVKECFEPDAVLLLLHQILIS-PNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSKS 207 (254)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHcc-ccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 334567777888776666555555544431 223344445568888888543 444455555555555555543
No 49
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=47.66 E-value=8.6e+02 Score=33.88 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=21.5
Q ss_pred HHHHhhCCCcCH----HHHHhhhcCCHHHHHHHHHHHHH
Q 001671 704 VVEFSADQYGSR----FIQQKLETATTEEKNMVFQEIMP 738 (1034)
Q Consensus 704 ivELa~Dq~GSR----vLQklLe~as~Eqr~~If~EI~p 738 (1034)
..-+-.++..|. +|+-.|+....|.-.+|+++..+
T Consensus 1448 erlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~ 1486 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK 1486 (1710)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 344455666664 55666777666666667776654
No 50
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.50 E-value=3.4e+02 Score=27.73 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCCc
Q 001671 930 ASNVIEKCLSFGTPAERQALV-NEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYG 1008 (1034)
Q Consensus 930 GS~VVEKcL~~as~k~Rk~II-keLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~yG 1008 (1034)
+=.++|.|++.|.......|. ++|+ +.|..|+.+ ..+...+++|++-|..-...++..+.=
T Consensus 61 AL~LLe~~vkNCG~~fh~evas~~fl------~~l~~l~~~------------~~~~~Vk~kil~li~~W~~~f~~~~~l 122 (142)
T cd03569 61 ALLLLESCVKNCGTHFHDEVASREFM------DELKDLIKT------------TKNEEVRQKILELIQAWALAFRNKPQL 122 (142)
T ss_pred HHHHHHHHHHHCCHHHHHHHhhHHHH------HHHHHHHcc------------cCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 446788888887766554443 3444 335555554 345556777777776666666666555
Q ss_pred hHHHHHHHHHHhcc
Q 001671 1009 KHIVARVEKLVAAG 1022 (1034)
Q Consensus 1009 k~IV~klekli~~g 1022 (1034)
..|.+..+.|...|
T Consensus 123 ~~i~~~y~~L~~~G 136 (142)
T cd03569 123 KYVVDTYQILKAEG 136 (142)
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666666655
No 51
>PLN03218 maturation of RBCL 1; Provisional
Probab=46.06 E-value=7.9e+02 Score=33.29 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 001671 932 NVIEKCLSFGTPAERQALVNEML 954 (1034)
Q Consensus 932 ~VVEKcL~~as~k~Rk~IIkeLl 954 (1034)
.+|..|.+.+..++-..++++|.
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444444455455455555554
No 52
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=46.00 E-value=5e+02 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=17.7
Q ss_pred CchhHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHh
Q 001671 970 QFANYVVQKVLETCDDQQ-LELILNRIKVHLNALK 1003 (1034)
Q Consensus 970 ~yGNyVVQkLLd~~Dd~q-Re~ILseLk~~L~eL~ 1003 (1034)
..+..|-+++ +.-|+.+ -+.|.+.+...+.-++
T Consensus 313 ~i~~~V~~~l-~~~~~~~l~~~i~~~v~~dL~~Ir 346 (367)
T PF04286_consen 313 DIGEIVEEKL-NSLDDEELEELIESKVGKDLQWIR 346 (367)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhHhhh
Confidence 4455555555 4444444 4556666666665544
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=45.71 E-value=8.1e+02 Score=31.90 Aligned_cols=303 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhh-cccccHHHHHHHhh
Q 001671 717 IQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSL-QMYGCRVIQKAIEV 795 (1034)
Q Consensus 717 LQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~-hkyGSrVVQklLe~ 795 (1034)
|++.|+..+.+++...++.|.-.+..=-.-.+.-.=|-|++..-..+.|+.+.-.+......--. ---.+.-+||=+..
T Consensus 37 Lr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d 116 (746)
T PTZ00429 37 LQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTN 116 (746)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCC
Q ss_pred CCHHHH------------HHHHHHHHHHHHHHhcccCCchHHHHHHhhCCh--hHHHHHHH--HHHHhHHHhhcCCCCch
Q 001671 796 VELDQQ------------TQMVKELDGHIMRCVRDQNGNHVIQKCIECVPE--DAIQFIVL--TFYDQVVTLSTHPYGCR 859 (1034)
Q Consensus 796 ~s~eqr------------~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~--e~~q~Ii~--~L~g~lv~Ls~hkyGS~ 859 (1034)
-++-.| ..|++.+...+.+++.|.. -||-.+++-++.. ..-..++. .+...+.++..++...-
T Consensus 117 ~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~V 195 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVV 195 (746)
T ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccH
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHH
Q 001671 860 VIQRVLEHCHDEKTQSIMMDEILQSVCMLAQ-----DQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVI 934 (1034)
Q Consensus 860 VIQklLe~~~d~~~r~~LleeIl~~l~~La~-----DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VV 934 (1034)
|...+.-.+.-.......++.+...+..|+. ++||...|-.+|..-.|.+... ...++..+....++.-.+-|+
T Consensus 196 v~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e-~~~il~~l~~~Lq~~N~AVVl 274 (746)
T PTZ00429 196 ASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES-AETLLTRVLPRMSHQNPAVVM 274 (746)
T ss_pred HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHhcCCCHHHHH
Q ss_pred H------HHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhc-CCchhHHHHHHHhcCCHHHHHHHHHHHHHH---------
Q 001671 935 E------KCLSFGTPAERQALVNEMLGSIEENEPLQVMMK-DQFANYVVQKVLETCDDQQLELILNRIKVH--------- 998 (1034)
Q Consensus 935 E------KcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~-D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~--------- 998 (1034)
+ .+....++...+.+++.+. ..+..|.. ++--.||+.+.+...-......+...++..
T Consensus 275 ~Aik~il~l~~~~~~~~~~~~~~rl~------~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y 348 (746)
T PTZ00429 275 GAIKVVANLASRCSQELIERCTVRVN------TALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPF 348 (746)
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHH------HHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHH
Q ss_pred --------HHHHhhCCCchHHHHHHHHHHhcccchhh
Q 001671 999 --------LNALKKYTYGKHIVARVEKLVAAGERRIS 1027 (1034)
Q Consensus 999 --------L~eL~~s~yGk~IV~klekli~~ge~r~~ 1027 (1034)
+..|+....-..|+..+..+++.-+...+
T Consensus 349 IK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~ 385 (746)
T PTZ00429 349 VKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFV 385 (746)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHH
No 54
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=45.67 E-value=6.3e+02 Score=30.63 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHhhhcccccHHHHHHHhhC
Q 001671 776 VLTLSLQMYGCRVIQKAIEVV 796 (1034)
Q Consensus 776 V~eLs~hkyGSrVVQklLe~~ 796 (1034)
+..|+..+.|..+|..+.+.+
T Consensus 239 m~nL~~S~~g~~~i~~L~~iL 259 (464)
T PF11864_consen 239 MRNLLKSHLGHSAIRTLCDIL 259 (464)
T ss_pred HHHHHcCccHHHHHHHHHHHH
Confidence 344555566666666666655
No 55
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.57 E-value=8.4e+02 Score=32.06 Aligned_cols=224 Identities=14% Similarity=0.222 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHHHH--HhhhcccccHHHHHHHhhCCH--------HHHHHHHHHHHHHHHH-H-----hcccCCchH
Q 001671 761 TASQVRELADQLTGHVL--TLSLQMYGCRVIQKAIEVVEL--------DQQTQMVKELDGHIMR-C-----VRDQNGNHV 824 (1034)
Q Consensus 761 s~eqr~~Lle~L~g~V~--eLs~hkyGSrVVQklLe~~s~--------eqr~~LV~EL~~~i~e-L-----~kDq~GNhV 824 (1034)
.+++...++..+...+. ..+.|.|+.+.++|++..... +...-.+..+..++.+ + ..++|-...
T Consensus 492 ~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKa 571 (960)
T KOG1992|consen 492 GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKA 571 (960)
T ss_pred ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHH
Confidence 45555555555544433 457899999999999966543 2222112222222221 1 233333344
Q ss_pred HHHHHhhCChhH---HHHHHHHHHHhHHHhhcCCCCchHHHHHHhh--------cC-CHHHHHHHHHHHHHHHHHHhcC-
Q 001671 825 IQKCIECVPEDA---IQFIVLTFYDQVVTLSTHPYGCRVIQRVLEH--------CH-DEKTQSIMMDEILQSVCMLAQD- 891 (1034)
Q Consensus 825 IQKlLE~~p~e~---~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~--------~~-d~~~r~~LleeIl~~l~~La~D- 891 (1034)
|+.+|...+... ...++..+..-+.+.++++....--.-++|. |+ ++.....+.+.++..+..+...
T Consensus 572 ImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD 651 (960)
T KOG1992|consen 572 IMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED 651 (960)
T ss_pred HHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433 3445555666666667666543332222221 22 3333333444444333222211
Q ss_pred -----cchhHHHHHHHhhCC---hhhHHHHHHHHH-HHHHHHhcCch-HHHHHHHHHhcCCHHHH-HHHHHHHhcCCCCc
Q 001671 892 -----QYGNYVVQHVLEHGK---PHERSAIIKKLT-GQIVQMSQQKF-ASNVIEKCLSFGTPAER-QALVNEMLGSIEEN 960 (1034)
Q Consensus 892 -----qyGNyVVQ~LLe~~~---~keR~~IIe~L~-g~Iv~LS~~K~-GS~VVEKcL~~as~k~R-k~IIkeLlg~~~~~ 960 (1034)
+|+-.++--+++++. ++....++..|. +++++..-+-- --++++.+|+.+....- ..-+.-++|.-+
T Consensus 652 I~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifq-- 729 (960)
T KOG1992|consen 652 IQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQ-- 729 (960)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHH--
Confidence 334344444566544 444455555433 45554443322 25778888887653221 111222221100
Q ss_pred hhHHHhhcCCchhHHHHHHHhcCCHH
Q 001671 961 EPLQVMMKDQFANYVVQKVLETCDDQ 986 (1034)
Q Consensus 961 e~L~~La~D~yGNyVVQkLLd~~Dd~ 986 (1034)
.-+..=+.|.+|-|++.++++..+..
T Consensus 730 kLiaSka~Dh~GF~LLn~i~~~~~~~ 755 (960)
T KOG1992|consen 730 KLIASKANDHHGFYLLNTIIESIPPN 755 (960)
T ss_pred HHhcCcccchhHHHHHHHHHhcCCHh
Confidence 11223357999999999999998755
No 56
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=45.17 E-value=3.9e+02 Score=33.65 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=65.6
Q ss_pred HHHHhcCc---chhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhc--CCHHHHHHHHHHHhcCCCC
Q 001671 885 VCMLAQDQ---YGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSF--GTPAERQALVNEMLGSIEE 959 (1034)
Q Consensus 885 l~~La~Dq---yGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~--as~k~Rk~IIkeLlg~~~~ 959 (1034)
+..|+.|. ...|.|..+|+.+..+....+++.+..-+-+|+.+ |---+|+.+=.. .-+..++.++.-|.
T Consensus 345 vEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~-FKiI~ida~rsLsl~Fp~k~~s~l~FL~----- 418 (898)
T COG5240 345 VESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDG-FKIIAIDALRSLSLLFPSKKLSYLDFLG----- 418 (898)
T ss_pred HHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccC-ceEEeHHHHHHHHhhCcHHHHHHHHHHH-----
Confidence 55677665 46799999999999888888888777766666642 322222222111 11333333333322
Q ss_pred chhHHHhhcCCchhHHHHHHHhcC--CHHHHHHHHHHHHHHHHHH
Q 001671 960 NEPLQVMMKDQFANYVVQKVLETC--DDQQLELILNRIKVHLNAL 1002 (1034)
Q Consensus 960 ~e~L~~La~D~yGNyVVQkLLd~~--Dd~qRe~ILseLk~~L~eL 1002 (1034)
+.|..=--=.|-+|.|..+.+.. ++.-||.+++.|...++.-
T Consensus 419 -~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDc 462 (898)
T COG5240 419 -SSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDC 462 (898)
T ss_pred -HHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhc
Confidence 11222112245677888777766 4566888888888776553
No 57
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=44.89 E-value=5.2e+02 Score=29.41 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=64.6
Q ss_pred HHHhhhcCCHHHHHHHHHHHH-H-----hHHhhhccccccchhhhhcccCCH---HHHHHHH-HHHHHHHHHhhhccccc
Q 001671 717 IQQKLETATTEEKNMVFQEIM-P-----QALSLMTDVFGNYVIQKFFEHGTA---SQVRELA-DQLTGHVLTLSLQMYGC 786 (1034)
Q Consensus 717 LQklLe~as~Eqr~~If~EI~-p-----~~leLmtD~fGNhVIQKLLe~~s~---eqr~~Ll-e~L~g~V~eLs~hkyGS 786 (1034)
.=+.|-.|++.|.+.|+.++. + -+..||. .++....+ ..-..++ ..+.+++..+ ..-++
T Consensus 40 ~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~---------~ll~Ls~dls~~~a~~l~~sl~LpkilsL--~~~AS 108 (263)
T PF11510_consen 40 ELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCS---------SLLALSPDLSHSNATVLLRSLFLPKILSL--EEPAS 108 (263)
T ss_dssp HHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHH---------HHHH-SS---HHHHHHHHHHHHHHHHHH---SS---
T ss_pred HHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHH---------HHHccCcccchhhHHHHHHHHHHHHHHhc--CCCcc
Confidence 334667789999999999876 2 2333433 22222111 1112233 3355777666 67889
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCc---hHHHHHH--hhCChhHHHHHHHHHHHhHHHhhcCCCCchHH
Q 001671 787 RVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGN---HVIQKCI--ECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVI 861 (1034)
Q Consensus 787 rVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GN---hVIQKlL--E~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~VI 861 (1034)
|++..++..+....-..+++.+...+. -....|+ -+|.+++ ++.+++....++..+.+..+ ...=..|+
T Consensus 109 R~L~sal~~f~k~~p~~~~~all~PlL--~~~~~g~~Q~eLl~rlvk~~~l~p~~~~l~l~~~L~~~W----~E~~~~Vl 182 (263)
T PF11510_consen 109 RLLVSALTSFCKKYPRPVCEALLVPLL--QAPGLGPPQCELLCRLVKKECLEPDHRLLLLRQILELVW----NEETFLVL 182 (263)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHH--HSTT--HHHHHHHHHHHH-TTS-HHHHHHHHHHHHHS-------HHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHhCcC----cHHHHHHH
Confidence 999988865544444445544433322 1112222 3555666 56666666655555443221 22225688
Q ss_pred HHHHhhc
Q 001671 862 QRVLEHC 868 (1034)
Q Consensus 862 QklLe~~ 868 (1034)
|.+++..
T Consensus 183 q~lL~~k 189 (263)
T PF11510_consen 183 QSLLERK 189 (263)
T ss_dssp HHHHTT-
T ss_pred HHHHhcC
Confidence 8888775
No 58
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.35 E-value=5.6e+02 Score=31.83 Aligned_cols=171 Identities=18% Similarity=0.243 Sum_probs=82.8
Q ss_pred hhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHH--Hh---hCChhHHHHHHHH-HHHhHHHhh
Q 001671 779 LSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKC--IE---CVPEDAIQFIVLT-FYDQVVTLS 852 (1034)
Q Consensus 779 Ls~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKl--LE---~~p~e~~q~Ii~~-L~g~lv~Ls 852 (1034)
+++.+...++|-.+.....+.--..-+.++.+-+..|+.+.--..+.-.| |. -.+.+.++.+++. +..+++++.
T Consensus 209 ~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 209 LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 44555566666666654432222223334444444444433322221111 11 1344566665554 667777777
Q ss_pred cCCCCchH---HHHHHh--hcCCHHHHHHHHHHHHHHHHHHhcCcchh-------HHHHHHHhhCChhhHHHHHHH-HHH
Q 001671 853 THPYGCRV---IQRVLE--HCHDEKTQSIMMDEILQSVCMLAQDQYGN-------YVVQHVLEHGKPHERSAIIKK-LTG 919 (1034)
Q Consensus 853 ~hkyGS~V---IQklLe--~~~d~~~r~~LleeIl~~l~~La~DqyGN-------yVVQ~LLe~~~~keR~~IIe~-L~g 919 (1034)
.|.-+.-+ +..+-. .+.+.+++..|-...+..+..|....+-. ++|--|.. +..++...|++. |..
T Consensus 289 ~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p 367 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIP 367 (514)
T ss_pred cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHH
Confidence 77765433 222222 22233333333345666666666643333 33333322 556666666665 555
Q ss_pred HHHHHhc------CchHHHHHHHHHhcCCHHHHHHHH
Q 001671 920 QIVQMSQ------QKFASNVIEKCLSFGTPAERQALV 950 (1034)
Q Consensus 920 ~Iv~LS~------~K~GS~VVEKcL~~as~k~Rk~II 950 (1034)
.++.+.+ .|-+..+|-.+...+++++-+.++
T Consensus 368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv 404 (514)
T KOG0166|consen 368 VLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLV 404 (514)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 5555543 344666666666667766655444
No 59
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=43.84 E-value=78 Score=34.92 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=74.9
Q ss_pred CCchHHHHHHhhcCCHHH--HHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHH
Q 001671 856 YGCRVIQRVLEHCHDEKT--QSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNV 933 (1034)
Q Consensus 856 yGS~VIQklLe~~~d~~~--r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~V 933 (1034)
.||..++.++..-..... ...++..|.+.+.++-. ..|...-..++. +......+...-..-|-.|+.++.|-.+
T Consensus 83 vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~-~~g~~~~~~lfs--~~~l~~tl~~~Yf~~IG~lS~~~~Gl~l 159 (226)
T PF14666_consen 83 VGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDP-MSGITAHDPLFS--PQRLSTTLSRGYFLFIGVLSSTPNGLKL 159 (226)
T ss_pred HHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhh-hcCCcccccccC--HHHHHhhHHHHHHHHHHHHhCChhHHHH
Confidence 378888888776322221 12344445444444411 111111111221 1111223333334456778999999888
Q ss_pred HHHH------HhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001671 934 IEKC------LSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHL 999 (1034)
Q Consensus 934 VEKc------L~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L 999 (1034)
+|++ ....+.+.+..+++-++..- ....+.+..-++.|+|..+++..|....+.|+..+
T Consensus 160 Le~~~if~~l~~i~~~~~~~~l~klil~~L-------DY~~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 160 LERWNIFTMLYHIFSLSSRDDLLKLILSSL-------DYSVDGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHCCHHHHHHHHHccCchHHHHHHHHhhC-------CCCCccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 7753 22233445566666666432 35678889999999999999988877766665443
No 60
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=43.38 E-value=6.7e+02 Score=30.27 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=8.0
Q ss_pred HHHHhhCCCcCHHHHH
Q 001671 704 VVEFSADQYGSRFIQQ 719 (1034)
Q Consensus 704 ivELa~Dq~GSRvLQk 719 (1034)
+..||++-.-+|+...
T Consensus 85 lp~fc~~d~~~rv~d~ 100 (460)
T KOG2213|consen 85 LPLFCKGDALSRVNDV 100 (460)
T ss_pred cchhccCchhhhhHHH
Confidence 4455665444554433
No 61
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.71 E-value=9e+02 Score=31.57 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q 001671 988 LELILNRIKVHLNALKKYTY 1007 (1034)
Q Consensus 988 Re~ILseLk~~L~eL~~s~y 1007 (1034)
|..|++.+..-+.+++..+-
T Consensus 431 r~~ii~~l~~~~~~irS~ki 450 (948)
T KOG1058|consen 431 RASIIEKLLETFPQIRSSKI 450 (948)
T ss_pred HHHHHHHHHHhhhhhccccc
Confidence 55667777666666665543
No 62
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=42.70 E-value=3.2e+02 Score=30.87 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=47.1
Q ss_pred cCCHHHHHHHHHHHHHhHHhhhccc------cccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccc-cHHHHHHHhh
Q 001671 723 TATTEEKNMVFQEIMPQALSLMTDV------FGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYG-CRVIQKAIEV 795 (1034)
Q Consensus 723 ~as~Eqr~~If~EI~p~~leLmtD~------fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyG-SrVVQklLe~ 795 (1034)
..+.......+.-|.|-++.|+.|- -|..++..+++.+.... .....++| ..|++.++..
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-------------~~~L~~tGl~~v~~~al~~ 173 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-------------WDILRRTGLFSVFEDALFP 173 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-------------hHHHHHcChHHHHHHHHHH
Confidence 5566677788888888888888774 35555555555554433 11122333 3344444431
Q ss_pred ----C----CHHHHHHHHHHHHHHHHHHhcc
Q 001671 796 ----V----ELDQQTQMVKELDGHIMRCVRD 818 (1034)
Q Consensus 796 ----~----s~eqr~~LV~EL~~~i~eL~kD 818 (1034)
+ ..++-..++...++.+..|++-
T Consensus 174 ~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 174 CLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred HhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 1 1355566777777766666543
No 63
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=42.68 E-value=3.3e+02 Score=34.07 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCch
Q 001671 931 SNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFA 972 (1034)
Q Consensus 931 S~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yG 972 (1034)
|--||.+|..++.+....|.+.+...++ -.+..+..+.+|
T Consensus 469 se~Ve~ll~~~s~evW~ti~n~f~~e~n--~av~~~~~~~~~ 508 (772)
T KOG2203|consen 469 SEPVEALLDGASKEVWDTIRNLFRRETN--TAVYGLSNAVYG 508 (772)
T ss_pred hHHHHHHHhccccccHHHHHHHHHhccc--hhHHHHhhcccc
Confidence 5678888888888888888888875432 334444444444
No 64
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=42.25 E-value=5.5e+02 Score=28.96 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=33.9
Q ss_pred cccHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhccc------CCchHHHHHHhhCChhH
Q 001671 784 YGCRVIQKAIE-VVELDQQTQMVKELDGHIMRCVRDQ------NGNHVIQKCIECVPEDA 836 (1034)
Q Consensus 784 yGSrVVQklLe-~~s~eqr~~LV~EL~~~i~eL~kDq------~GNhVIQKlLE~~p~e~ 836 (1034)
++++|+.-++. .++.....+.+.-+.+-+..++-|. .|..+++.+++.++...
T Consensus 95 ~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred ccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 34456666666 6666666666666677777776653 46677777777766544
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.06 E-value=9e+02 Score=31.39 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcccccHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHhcccCCchHHHHHHh
Q 001671 772 LTGHVLTLSLQMYGCRVIQKAIEVVELD--QQTQMVKELDGHIMRCVRDQNGNHVIQKCIE 830 (1034)
Q Consensus 772 L~g~V~eLs~hkyGSrVVQklLe~~s~e--qr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE 830 (1034)
+.+-|.+|.+..--.||+-|+|+....= ---.+.+.|.+.+.+++....+--+|=.|+.
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvN 279 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVN 279 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 5677888888999999999999754310 0012333344444444444444444444444
No 66
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=6.6e+02 Score=29.68 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHH------hHHhhhccccccchhhhhcccCCHHHHHH
Q 001671 724 ATTEEKNMVFQEIMP------QALSLMTDVFGNYVIQKFFEHGTASQVRE 767 (1034)
Q Consensus 724 as~Eqr~~If~EI~p------~~leLmtD~fGNhVIQKLLe~~s~eqr~~ 767 (1034)
.+.+++..-|++|.. ++..|++...---|+ ..+++...+.|..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll-~~l~~~~~~lR~~ 143 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLL-GYLENSDAELREL 143 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHH-HHhcCCcHHHHHH
Confidence 456778877777765 345566555433333 4777776665553
No 67
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=40.92 E-value=5.2e+02 Score=30.86 Aligned_cols=87 Identities=10% Similarity=0.181 Sum_probs=49.6
Q ss_pred HHHHHHHHHhHHhhhccccccc--hhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHH------HHHHHhhC---CH
Q 001671 730 NMVFQEIMPQALSLMTDVFGNY--VIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRV------IQKAIEVV---EL 798 (1034)
Q Consensus 730 ~~If~EI~p~~leLmtD~fGNh--VIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrV------VQklLe~~---s~ 798 (1034)
..|+..-.|+|..-.....+.. .+..+..-...+-++.+++.+..++.++-.+.-+.|+ |+.+++.. +.
T Consensus 168 ~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~ 247 (373)
T PF14911_consen 168 RNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNE 247 (373)
T ss_pred HHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccc
Confidence 3466666677766655554444 2222222234567788888898888888665444443 45555553 23
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001671 799 DQQTQMVKELDGHIMRCV 816 (1034)
Q Consensus 799 eqr~~LV~EL~~~i~eL~ 816 (1034)
.+...+++.+.+.+++|+
T Consensus 248 ~~~~~~~~~~lp~lL~c~ 265 (373)
T PF14911_consen 248 NQILTLLRLVLPSLLECL 265 (373)
T ss_pred hhHHHHHHHhhHHHHHHH
Confidence 333445555666666654
No 68
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=39.81 E-value=4.4e+02 Score=29.97 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=23.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCC
Q 001671 975 VVQKVLETCDDQQLELILNRIKVHLNALKKYTY 1007 (1034)
Q Consensus 975 VVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~y 1007 (1034)
+|..+++...+..||+|+.-...-+..|.....
T Consensus 240 ~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 240 LIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 888888888888888888877777777665544
No 69
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=39.52 E-value=7.4e+02 Score=29.65 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCchH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCC
Q 001671 907 PHERSAIIKKLTGQIVQMSQQKFA--SNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCD 984 (1034)
Q Consensus 907 ~keR~~IIe~L~g~Iv~LS~~K~G--S~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~D 984 (1034)
+..-..+++.|..+.......|-- =+.++.++....+.+...++..++ ....-|.+..-.-|.+++|...+
T Consensus 250 p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf-------~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 250 PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLF-------KRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH-------HHHHHHHTSSSHHHHHHHHGGGG
T ss_pred chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HHHHHHhCCCCHHHHHHHHHHHC
Confidence 333344444444443332222222 245677777777777777777776 23334444445566677776664
Q ss_pred HHH--------HHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 001671 985 DQQ--------LELILNRIKVHLNALKKYTYGKHIVARV 1015 (1034)
Q Consensus 985 d~q--------Re~ILseLk~~L~eL~~s~yGk~IV~kl 1015 (1034)
... ++.|+..|-+.+...+...|-.-|-...
T Consensus 323 n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a 361 (409)
T PF01603_consen 323 NEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLA 361 (409)
T ss_dssp SHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHH
T ss_pred CHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 432 3556666666666666655555544433
No 70
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=38.27 E-value=1.8e+02 Score=37.71 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCchH
Q 001671 988 LELILNRIKVHLNALKKYTYGKH 1010 (1034)
Q Consensus 988 Re~ILseLk~~L~eL~~s~yGk~ 1010 (1034)
...+++.+..-..+|...+.-+.
T Consensus 324 l~~~~qi~l~g~~el~~ap~~~~ 346 (830)
T PRK07003 324 VQLFYQIATVGRGELGLAPDEYA 346 (830)
T ss_pred HHHHHHHHHhHHHHhhcCCCHHH
Confidence 33444444444455554444443
No 71
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=36.33 E-value=1.4e+03 Score=32.07 Aligned_cols=288 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred ChhhhHHHHHhhhcCccccchHHHHHHHHHHHhhCCCcCH---HHHHhhhcCCHHHHHHHHHHHHHhHH----------h
Q 001671 676 DESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR---FIQQKLETATTEEKNMVFQEIMPQAL----------S 742 (1034)
Q Consensus 676 d~~~~s~LLeEfk~neer~~~LseI~G~ivELa~Dq~GSR---vLQklLe~as~Eqr~~If~EI~p~~l----------e 742 (1034)
+....-.+|+.+.+=.--.-.+++++.++++....-...- +|.-+|...+..+...|+.+|..++. .
T Consensus 239 ~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~~~~~v~~~~~~ 318 (1426)
T PF14631_consen 239 NPELTVPILDALSNLNLSPELLEEVREKVLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLDFEQCVLPSRIQ 318 (1426)
T ss_dssp -STTHHHHHHHHHHS---HHHHHHHHHHHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH-----------
T ss_pred CCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHccccccccchhhc
Q ss_pred hhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCc
Q 001671 743 LMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGN 822 (1034)
Q Consensus 743 LmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GN 822 (1034)
-......+.....--.........-....+.---..+-.++..|--+.|.|+........+.++
T Consensus 319 ~s~~~~k~~~~~~~~~~~~~s~~~~~~lil~~lks~lr~~k~l~eawiK~I~~~~~~~~hkv~D---------------- 382 (1426)
T PF14631_consen 319 ASQRKLKNKGNASSSGNQENSSQDCEKLILDVLKSGLRFSKDLSEAWIKAIESLEDASDHKVID---------------- 382 (1426)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT--THH----------------
T ss_pred ccccccccCcccccccccccccccHHHHHHHHHHHHHHhccHHHHHHHHHHhcCCCccccchHH----------------
Q ss_pred hHHHHHHhhCChhHHHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcC----------c
Q 001671 823 HVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQD----------Q 892 (1034)
Q Consensus 823 hVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~D----------q 892 (1034)
.++--+|-.........|-..++.++..=.... .+++.++.. ...+++..+..+..|+.. .
T Consensus 383 l~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~---~ll~~~f~~------~~~vL~~~f~siL~la~~Ll~S~e~~v~~ 453 (1426)
T PF14631_consen 383 LWLLLILYSINEDNRKSIEKILKKKIKSGHITE---QLLDQTFKG------HSEVLKDYFPSILSLAQSLLRSKEPSVRE 453 (1426)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-H---HHHHHHHHH------HHHHHTTSHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHcCCccchHHHHHHHHHHHHhCcccH---HHHHHHHhh------hHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q ss_pred chhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCch--------------------HHHHHHHHHhc---CCHHHHHHH
Q 001671 893 YGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKF--------------------ASNVIEKCLSF---GTPAERQAL 949 (1034)
Q Consensus 893 yGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~--------------------GS~VVEKcL~~---as~k~Rk~I 949 (1034)
||.+.-..++.+-+...+.+|+..|..++..-..... -+..|..+|++ -+..+-+++
T Consensus 454 FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~l~~Ls~~qiR~l 533 (1426)
T PF14631_consen 454 FGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDYLDNLSLQQIRKL 533 (1426)
T ss_dssp HHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGGGGG--HHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q ss_pred HHHHhcCCCCchhHHHhhcCCch-------hHHHHHHHhcCCHHHHHH-HHHHHH
Q 001671 950 VNEMLGSIEENEPLQVMMKDQFA-------NYVVQKVLETCDDQQLEL-ILNRIK 996 (1034)
Q Consensus 950 IkeLlg~~~~~e~L~~La~D~yG-------NyVVQkLLd~~Dd~qRe~-ILseLk 996 (1034)
+.-|+ ...+....-+ ..||.|.|...+.+.|+. |+..+.
T Consensus 534 f~il~--------~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~ 580 (1426)
T PF14631_consen 534 FDILC--------TLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVM 580 (1426)
T ss_dssp HHHHH--------HHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHH
T ss_pred HHHHH--------HHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHH
No 72
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=36.17 E-value=9.8e+02 Score=30.12 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=12.4
Q ss_pred HHHHhhhc--ccccHHHHHHHhhCCHHH
Q 001671 775 HVLTLSLQ--MYGCRVIQKAIEVVELDQ 800 (1034)
Q Consensus 775 ~V~eLs~h--kyGSrVVQklLe~~s~eq 800 (1034)
.+..+|.+ .+=++|+.-+...+..|+
T Consensus 82 ~lp~~ck~~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 82 GLPQLCKDNPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HGGGG--T--T-HHHHHHHHHHHTT---
T ss_pred hHHHHHHhHHHHHhHHHHHHHHHHhccc
Confidence 44556665 456677777666665443
No 73
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=36.08 E-value=7e+02 Score=28.41 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=23.4
Q ss_pred hcccCCHHHHHHHHHHHH------HHHHHhhhcccccHH--HHHHHh
Q 001671 756 FFEHGTASQVRELADQLT------GHVLTLSLQMYGCRV--IQKAIE 794 (1034)
Q Consensus 756 LLe~~s~eqr~~Lle~L~------g~V~eLs~hkyGSrV--VQklLe 794 (1034)
+.+.+.++.|+.-+.++. +++..+.+|.+|.-. +|.++.
T Consensus 3 i~~L~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIis 49 (262)
T PF04078_consen 3 ILDLCNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIIS 49 (262)
T ss_dssp HHHTSSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHG
T ss_pred hHHhcCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHH
Confidence 344556666666555543 456667788888653 566654
No 74
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=35.79 E-value=4.6e+02 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhh----CCCchHHHHHHHHHHh
Q 001671 990 LILNRIKVHLNALKK----YTYGKHIVARVEKLVA 1020 (1034)
Q Consensus 990 ~ILseLk~~L~eL~~----s~yGk~IV~klekli~ 1020 (1034)
..++++...+..... .....++--.++.++.
T Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~l~~ 204 (209)
T PF02854_consen 170 KALDEIFERLQKYANSKKDPNLSSRIRFMLEDLIE 204 (209)
T ss_dssp HHHHHHHHHHHHHHHHCHSSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 344444444444443 3566666666666654
No 75
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=35.55 E-value=2.1e+02 Score=34.46 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=7.2
Q ss_pred HHHHHHhhCCHHHHH
Q 001671 788 VIQKAIEVVELDQQT 802 (1034)
Q Consensus 788 VVQklLe~~s~eqr~ 802 (1034)
..++++..++.+++.
T Consensus 106 ~~~~lL~~l~~~er~ 120 (449)
T TIGR00400 106 VVQQLLASSTEEERK 120 (449)
T ss_pred HHHHHHHcCCHHHHH
Confidence 344455555555443
No 76
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=35.21 E-value=7.5e+02 Score=31.15 Aligned_cols=11 Identities=45% Similarity=0.936 Sum_probs=5.7
Q ss_pred hHHHHHHhhcC
Q 001671 859 RVIQRVLEHCH 869 (1034)
Q Consensus 859 ~VIQklLe~~~ 869 (1034)
++|..++-+|.
T Consensus 165 ylind~~~hcq 175 (757)
T KOG4368|consen 165 YLINDVLHHCQ 175 (757)
T ss_pred HHHHHHHHHHH
Confidence 34455555663
No 77
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=34.66 E-value=2e+02 Score=32.66 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 001671 911 SAIIKKLTGQIVQMSQQKFASNVIEKCLS 939 (1034)
Q Consensus 911 ~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~ 939 (1034)
.++++.+...+..|+.+..+-..+.+|+-
T Consensus 203 ~RLLKhIIrCYlRLsdnprar~aL~~~LP 231 (262)
T PF04078_consen 203 PRLLKHIIRCYLRLSDNPRAREALRQCLP 231 (262)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHHS-
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 46777777888888888887777777765
No 78
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=34.08 E-value=4.3e+02 Score=36.50 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=64.1
Q ss_pred hcCccccchHHHHHHHHHHHhhCCCcCHHHHHhhhcC---CHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHH
Q 001671 688 KSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETA---TTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQ 764 (1034)
Q Consensus 688 k~neer~~~LseI~G~ivELa~Dq~GSRvLQklLe~a---s~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eq 764 (1034)
.++..-.+.|-+...+.++++-=..+-.+-+..|... ..+|+.+||-.+..-....=++----.|.+++-.||++-
T Consensus 1452 rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~- 1530 (1710)
T KOG1070|consen 1452 RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAY- 1530 (1710)
T ss_pred hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchH-
Confidence 3444444454444444444443333334556777776 566778888776643322222222234455555555542
Q ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCCh
Q 001671 765 VRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPE 834 (1034)
Q Consensus 765 r~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~ 834 (1034)
.+...|.+-........-+..+++.+++... |..+++-.....++.--..+-+.-|++..|+++|.
T Consensus 1531 --~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 --TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred --HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 2233333333333444444555555555444 22223322222222211112334556666666665
No 79
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=33.87 E-value=5.2e+02 Score=32.37 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=19.3
Q ss_pred hcCchHHHHHHHHHhc-C-CHHHHHHHHHHHh
Q 001671 925 SQQKFASNVIEKCLSF-G-TPAERQALVNEML 954 (1034)
Q Consensus 925 S~~K~GS~VVEKcL~~-a-s~k~Rk~IIkeLl 954 (1034)
-|..|-.+|+..||.. + =....+.+|+.|.
T Consensus 259 PC~~yC~NVmrGCLa~~a~Ld~~W~~~i~~l~ 290 (557)
T PF01153_consen 259 PCRGYCLNVMRGCLANQAELDPEWRNYIDSLE 290 (557)
T ss_dssp BBHHHHHHHHHHHTHHHHCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhhhHHhhhHHHHHHHHHHH
Confidence 4667788999999984 1 2344555555554
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=33.58 E-value=2.7e+02 Score=29.59 Aligned_cols=175 Identities=10% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhhhcccC-CHHHHHHHHHHHHHHHHHhhhc---------ccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCc
Q 001671 753 IQKFFEHG-TASQVRELADQLTGHVLTLSLQ---------MYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGN 822 (1034)
Q Consensus 753 IQKLLe~~-s~eqr~~Lle~L~g~V~eLs~h---------kyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GN 822 (1034)
|+++++.. .......+++.+..-+..++.. +.+|.+|..+...+... ....++.+.+.+.+++.+ ++
T Consensus 31 L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~--~~ 107 (228)
T PF12348_consen 31 LRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-FEPYADILLPPLLKKLGD--SK 107 (228)
T ss_dssp HHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG-----
T ss_pred HHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHcc--cc
Q ss_pred hHHHHHHhhCChhHHHHHH--HHH-HHhHHHhhcCCC------CchHHHHHHhhcC---CHHHHHHHHHHHHHHHHHHhc
Q 001671 823 HVIQKCIECVPEDAIQFIV--LTF-YDQVVTLSTHPY------GCRVIQRVLEHCH---DEKTQSIMMDEILQSVCMLAQ 890 (1034)
Q Consensus 823 hVIQKlLE~~p~e~~q~Ii--~~L-~g~lv~Ls~hky------GS~VIQklLe~~~---d~~~r~~LleeIl~~l~~La~ 890 (1034)
-+|+.....+=...++.+- ..+ ...+.....|+. ....+..+++... ..-.....++.+...+..++.
T Consensus 108 ~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~ 187 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS 187 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC
Q ss_pred CcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHH
Q 001671 891 DQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQAL 949 (1034)
Q Consensus 891 DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~I 949 (1034)
|+ ..=++.-....+......++.+. +.++...++..++.|
T Consensus 188 D~------------------~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 188 DA------------------DPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp SS-------------------HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred CC------------------CHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
No 81
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=32.58 E-value=1.1e+03 Score=29.60 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=46.8
Q ss_pred hcCchHHHHHHHHHhc-C-CHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 001671 925 SQQKFASNVIEKCLSF-G-TPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNAL 1002 (1034)
Q Consensus 925 S~~K~GS~VVEKcL~~-a-s~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL 1002 (1034)
-|.-|-.+|+.-|+.. + -.......|+.| ..|+.--+|.|=|..++...+.+.-+.|+.
T Consensus 267 PC~gYC~NVmrGClA~~adLd~~W~~~idSl----------~~L~~~l~g~~~iesvl~~i~v~iseAIm~--------- 327 (563)
T KOG3821|consen 267 PCYGYCLNVMRGCLANQADLDPEWRNYIDSL----------LELADKLEGPFNIESVLLPIHVKISEAIMA--------- 327 (563)
T ss_pred CcHHHHHHHHHHHhhhhcccchHHHHHHHHH----------HHHHHhhcCcchHHHHHhhhhhHHHHHHHH---------
Confidence 3567789999999985 2 123334444444 466666777777888888776555554443
Q ss_pred hhCCCchHHHHHHHHHHhcc
Q 001671 1003 KKYTYGKHIVARVEKLVAAG 1022 (1034)
Q Consensus 1003 ~~s~yGk~IV~klekli~~g 1022 (1034)
....+-.|-++|.+.+...
T Consensus 328 -~q~N~~~lt~kV~q~Cg~p 346 (563)
T KOG3821|consen 328 -AQENSDKLTAKVFQGCGPP 346 (563)
T ss_pred -HHHhhHHHHHHHHhhcCCC
Confidence 2234445555555555443
No 82
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=32.34 E-value=2.5e+02 Score=28.66 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=8.0
Q ss_pred cccccHHHHHHHhhCC
Q 001671 782 QMYGCRVIQKAIEVVE 797 (1034)
Q Consensus 782 hkyGSrVVQklLe~~s 797 (1034)
..++..+++++.+...
T Consensus 69 ~~f~~~ll~~~~~~f~ 84 (209)
T PF02854_consen 69 SEFRSLLLNRCQEEFE 84 (209)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3455555555554443
No 83
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=32.30 E-value=9e+02 Score=28.51 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001671 930 ASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVH 998 (1034)
Q Consensus 930 GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~ 998 (1034)
....+-..++-++++.|++|+..|. .+..+|+++......- +...-.++.++.|+..++..
T Consensus 263 ~~~~La~aLkg~~~~lrekilsnms------kR~~e~i~~el~~~gp--i~~~dve~aq~~il~~~r~l 323 (339)
T COG1536 263 DKEDLAIALKGASEELREKILSNMS------KRAAEMLKEELEFLGP--VRLSDVETAQKAILNIVRRL 323 (339)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHhcc------HHHHHHHHHHhhccCC--ccHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666664 3455555554433322 11111234466677766543
No 84
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=31.85 E-value=4.6e+02 Score=33.72 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=11.4
Q ss_pred HHHHhcCcchhHHHHHHHh
Q 001671 885 VCMLAQDQYGNYVVQHVLE 903 (1034)
Q Consensus 885 l~~La~DqyGNyVVQ~LLe 903 (1034)
+..+.-..+|.+.+|++++
T Consensus 387 l~~~vg~eigahf~q~~ve 405 (822)
T KOG2141|consen 387 LHTMVGNEIGAHFLQTFVE 405 (822)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4445555666666666665
No 85
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=30.75 E-value=1.5e+03 Score=30.65 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHH-------HHHHHHH--HHhcCchHHHHHHHHHh---cCC
Q 001671 875 SIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIK-------KLTGQIV--QMSQQKFASNVIEKCLS---FGT 942 (1034)
Q Consensus 875 ~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe-------~L~g~Iv--~LS~~K~GS~VVEKcL~---~as 942 (1034)
+.+++.|+..-..-+.|+--.-+|.-++-.+.|-.+..++. .+..++. +|+.+.+ ..+-+||. ..+
T Consensus 584 ~~~Le~i~rkK~a~~lDsr~~~~iENay~~~~PPe~~~~~~k~r~p~~efiR~Li~~dL~k~tv--d~~lkllRkl~W~D 661 (1128)
T KOG2051|consen 584 RVFLEQIKRKKRASALDSRQATLIENAYYLCNPPERSKRLSKKRPPMQEFIRYLIRSDLSKDTV--DRVLKLLRKLDWSD 661 (1128)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHhHHhccChhhcccccccCCcHHHHHHHHHHHHhccccH--HHHHHHHHhccccc
Confidence 34566666555556666666667777777666444433222 2222222 2333332 23333333 356
Q ss_pred HHHHHHHHHHHhc
Q 001671 943 PAERQALVNEMLG 955 (1034)
Q Consensus 943 ~k~Rk~IIkeLlg 955 (1034)
++..+.+|+-|+.
T Consensus 662 ~e~~~yli~~~~k 674 (1128)
T KOG2051|consen 662 PEVKQYLISCFSK 674 (1128)
T ss_pred HHHHHHHHHHhhh
Confidence 6777777777763
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.73 E-value=5.1e+02 Score=34.06 Aligned_cols=22 Identities=9% Similarity=-0.091 Sum_probs=10.3
Q ss_pred HHHHHHhhCChhHHHHHHHHHH
Q 001671 824 VIQKCIECVPEDAIQFIVLTFY 845 (1034)
Q Consensus 824 VIQKlLE~~p~e~~q~Ii~~L~ 845 (1034)
.+.+++.....+.+..+++.+.
T Consensus 238 ~V~allg~~~~~~I~~lidAL~ 259 (824)
T PRK07764 238 RAVALLGVTDSALIDEAVDALA 259 (824)
T ss_pred HHHHHhcCCCHHHHHHHHHHHH
Confidence 3444444444444555555443
No 87
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.98 E-value=1.2e+03 Score=29.16 Aligned_cols=154 Identities=9% Similarity=0.162 Sum_probs=80.3
Q ss_pred ccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHh-----hCChhHHHHHHHH-HHHhHHHhhcC--
Q 001671 783 MYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIE-----CVPEDAIQFIVLT-FYDQVVTLSTH-- 854 (1034)
Q Consensus 783 kyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE-----~~p~e~~q~Ii~~-L~g~lv~Ls~h-- 854 (1034)
..+|+.|..+-+..++..+..+-..+.+.+.+|+.+..++.++-.+-. .+.+...+.+++. +...+..+...
T Consensus 255 ~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~ 334 (514)
T KOG0166|consen 255 TDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP 334 (514)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc
Confidence 345555554444444443333334577888888888877666333322 3456677776654 44555555542
Q ss_pred -----CCCchHHHHHHhhcCCHHHHHHHHH-HHHHHHHHHhcC------cchhHHHHHHHhhCChhhHHHHHHH-HHHHH
Q 001671 855 -----PYGCRVIQRVLEHCHDEKTQSIMMD-EILQSVCMLAQD------QYGNYVVQHVLEHGKPHERSAIIKK-LTGQI 921 (1034)
Q Consensus 855 -----kyGS~VIQklLe~~~d~~~r~~Lle-eIl~~l~~La~D------qyGNyVVQ~LLe~~~~keR~~IIe~-L~g~I 921 (1034)
+-.|++|-.+-. ...++.+.+++ .++..+..+... +-..++|-.+...+.+++-..+++. ++..+
T Consensus 335 ~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~pl 412 (514)
T KOG0166|consen 335 KESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPL 412 (514)
T ss_pred chhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhh
Confidence 335555555543 24445555554 344544444433 2245566666666666655555554 44555
Q ss_pred HHHhcCchHHHHHHHHHh
Q 001671 922 VQMSQQKFASNVIEKCLS 939 (1034)
Q Consensus 922 v~LS~~K~GS~VVEKcL~ 939 (1034)
+.+...+. .++|+.||.
T Consensus 413 cdlL~~~D-~~ii~v~Ld 429 (514)
T KOG0166|consen 413 CDLLTCPD-VKIILVALD 429 (514)
T ss_pred hhcccCCC-hHHHHHHHH
Confidence 55553333 233555554
No 88
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=29.66 E-value=1.4e+03 Score=30.02 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=24.9
Q ss_pred hhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHH
Q 001671 752 VIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800 (1034)
Q Consensus 752 VIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eq 800 (1034)
+++.+++ .+.+.|+.....|...+.++..+. +...|.++.+..+.
T Consensus 532 ~~~~~~~-~~~~~rr~~~~~lq~k~~~l~~n~---~LfeKgl~lF~dd~ 576 (803)
T PLN03083 532 RRKALFT-ENAERRRRLLDNLQKKIDESFLNM---QLYEKALDLFEDDQ 576 (803)
T ss_pred HHHHHHh-cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCccc
Confidence 3555665 556666666666666666655544 24445555444443
No 89
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.50 E-value=6.2e+02 Score=25.79 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHhcCCCCchh-HHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCC
Q 001671 930 ASNVIEKCLSFGTPAERQALV-NEMLGSIEENEP-LQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTY 1007 (1034)
Q Consensus 930 GS~VVEKcL~~as~k~Rk~II-keLlg~~~~~e~-L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~y 1007 (1034)
+=.++|.|++.|.......|. ++++ +. |..++.+++. .+...+++|++-|..=-..++..+.
T Consensus 59 aL~LLe~~vkNCG~~fh~eiask~Fl------~e~L~~~i~~~~~----------~~~~Vk~kil~li~~W~~~f~~~~~ 122 (141)
T cd03565 59 TLTVLETCVKNCGHRFHVLVAKKDFI------KDVLVKLINPKNN----------PPTIVQEKVLALIQAWADAFRGSPD 122 (141)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHhh------hHHHHHHHcccCC----------CcHHHHHHHHHHHHHHHHHhCCCcc
Confidence 456788888887766655444 3444 22 4444443321 2334567777777666666666665
Q ss_pred chHHHHHHHHHHhcc
Q 001671 1008 GKHIVARVEKLVAAG 1022 (1034)
Q Consensus 1008 Gk~IV~klekli~~g 1022 (1034)
=..|.+..+.|...|
T Consensus 123 l~~i~~~y~~L~~~G 137 (141)
T cd03565 123 LTGVVEVYEELKKKG 137 (141)
T ss_pred chHHHHHHHHHHHcC
Confidence 566766667666655
No 90
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=28.83 E-value=78 Score=29.43 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=42.1
Q ss_pred HhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCH
Q 001671 719 QKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVEL 798 (1034)
Q Consensus 719 klLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~ 798 (1034)
.+|+..+.+++..+|..+.+....-.-...-.....++++..+++....|+..|...=..-.....-....++++..++.
T Consensus 8 ~~l~~l~~~~~~~~~~~l~~~~~a~vl~~l~~~~~~~il~~l~~~~~a~il~~m~~dd~~~ll~~L~~~~~~~il~~l~~ 87 (102)
T PF03448_consen 8 ELLEELPPEERAQLFRLLPPEKAAEVLEELDPDTQAEILEALSPEEAAEILAEMDSDDAADLLEELPEEQREKILAALDE 87 (102)
T ss_dssp HCCCTS-CCHHHHHHHHS-HHHHHHHHCTS-CCCCCHCCCCS-HHHHHHHHCCS-HHHHHHHHCCSHHHHHHHHHHCS-H
T ss_pred HHHHhCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHccChHHHHHHHHHCCHHHHHHHHHcCCH
Confidence 45566666777777777654322221122223344466667777777777776654332222344444445555555555
Q ss_pred HHHHHH
Q 001671 799 DQQTQM 804 (1034)
Q Consensus 799 eqr~~L 804 (1034)
+.+..+
T Consensus 88 ~~~~~i 93 (102)
T PF03448_consen 88 EEREEI 93 (102)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 91
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.63 E-value=1.1e+03 Score=30.68 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=24.4
Q ss_pred hcCCchhHHHHHHHhcCCHHHH-HHHHHHHHHHHHHHhhCCCchHHH
Q 001671 967 MKDQFANYVVQKVLETCDDQQL-ELILNRIKVHLNALKKYTYGKHIV 1012 (1034)
Q Consensus 967 a~D~yGNyVVQkLLd~~Dd~qR-e~ILseLk~~L~eL~~s~yGk~IV 1012 (1034)
..-+|--++++-+=...-+... +.+.....+.+..|+. .||++++
T Consensus 773 ~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~-~fg~~~~ 818 (859)
T KOG1241|consen 773 LVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLAT-MFGKGVI 818 (859)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHH-Hcccchh
Confidence 3345555666655555533333 5555556666666665 5665544
No 92
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=28.50 E-value=9.5e+02 Score=30.35 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHhhCC-hhhHHHHHHHHHHHHHHH
Q 001671 880 EILQSVCMLAQDQYGNYVVQHVLEHGK-PHERSAIIKKLTGQIVQM 924 (1034)
Q Consensus 880 eIl~~l~~La~DqyGNyVVQ~LLe~~~-~keR~~IIe~L~g~Iv~L 924 (1034)
.+...+....-+.-.-.+|..+|+.+. +..+..++..+++.+..-
T Consensus 464 ~ll~~iL~~~p~~~rf~~i~dlLe~c~~~~~k~~~I~~lKd~i~~a 509 (633)
T PF08568_consen 464 TLLTRILHLFPEETRFKFIRDLLENCPFESLKASAIGWLKDEILKA 509 (633)
T ss_pred HHHHHHHHHCCcHhHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHH
Confidence 333333334433333335555565554 444555555555555443
No 93
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.38 E-value=1.1e+03 Score=28.15 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.4
Q ss_pred HHHHhhhc
Q 001671 716 FIQQKLET 723 (1034)
Q Consensus 716 vLQklLe~ 723 (1034)
.+|++++.
T Consensus 95 ~lqk~lk~ 102 (376)
T COG4399 95 LLQKLLKS 102 (376)
T ss_pred HHHHHHHh
Confidence 34444443
No 94
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=28.05 E-value=2.5e+02 Score=33.88 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHh
Q 001671 715 RFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIE 794 (1034)
Q Consensus 715 RvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe 794 (1034)
..++.+|+...+.+...+++++.++-.............-.+|++.+++.+.++++.+... -+..+++
T Consensus 21 ~~l~~~l~~~~~~dia~~l~~l~~~~~~~~~~~l~~~~~a~vl~~l~~~~~~~ll~~l~~~------------~~~~~~~ 88 (449)
T TIGR00400 21 SKIKEKFLKXQPXDIAEALKRLPGTELILLYRFLPKKIAVDTFSNLDQSTQNKLLNSFTNK------------EISEMIN 88 (449)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCHHHHHHHHHhCChhhHHHHHHcCCHHHHHHHHHhCCHH------------HHHHHHH
Confidence 3455566666666666666666554332222222222333456666666666666665433 2333444
Q ss_pred hCCHHHHHHHHHHH
Q 001671 795 VVELDQQTQMVKEL 808 (1034)
Q Consensus 795 ~~s~eqr~~LV~EL 808 (1034)
..+.++...+++++
T Consensus 89 ~l~~dd~~~ll~~l 102 (449)
T TIGR00400 89 EMNLDDVIDLLEEV 102 (449)
T ss_pred cCChhHHHHHHHhC
Confidence 45555555555444
No 95
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=27.83 E-value=1.4e+03 Score=29.49 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhC-CCchHHH
Q 001671 988 LELILNRIKVHLNALKKY-TYGKHIV 1012 (1034)
Q Consensus 988 Re~ILseLk~~L~eL~~s-~yGk~IV 1012 (1034)
+..-++.+..-+..|+.+ +-++.++
T Consensus 373 ~~~~~~~~~~lL~~l~~~s~~a~~~v 398 (696)
T PF14838_consen 373 KQEGLKRCCQLLSRLCSYSPAARKAV 398 (696)
T ss_pred hHHHHHHHHHHHHHHHccCchHHHHH
Confidence 334455555556666655 4555444
No 96
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=27.74 E-value=1.1e+03 Score=28.75 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=75.9
Q ss_pred CChhhhHHHHHhhhcCc--cccch---HHHHHHHHHH---HhhCCCcCHHHHHhhhcC---CHHHHHHHHHHHHHhH-Hh
Q 001671 675 LDESFASSLLDEFKSNK--TKCFE---LSEIAGHVVE---FSADQYGSRFIQQKLETA---TTEEKNMVFQEIMPQA-LS 742 (1034)
Q Consensus 675 ~d~~~~s~LLeEfk~ne--er~~~---LseI~G~ivE---La~Dq~GSRvLQklLe~a---s~Eqr~~If~EI~p~~-le 742 (1034)
+|+.|.-+||+-|.+.+ ||.+. |-.|.|++.. +...+--+.+++-+-+.. ..+|...|+-.|..-+ +.
T Consensus 174 id~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlP 253 (457)
T KOG2085|consen 174 IDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALP 253 (457)
T ss_pred hhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCc
Confidence 78999999999988764 45443 5566676532 233334444555544443 2344445554444211 11
Q ss_pred h----------------------hccccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccc------cHHHHHHHh
Q 001671 743 L----------------------MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYG------CRVIQKAIE 794 (1034)
Q Consensus 743 L----------------------mtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyG------SrVVQklLe 794 (1034)
| ..++.=.|+|-.+++.-. .+.+.+...+.+.+--... -++|..+++
T Consensus 254 lKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~-----kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe 328 (457)
T KOG2085|consen 254 LKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDP-----KLTETVIRGLLKYWPKTNSSKEVMFLNELEEILE 328 (457)
T ss_pred chhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCc-----cccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHH
Confidence 1 112222333333333321 1222222223333222222 145677777
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCC
Q 001671 795 VVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVP 833 (1034)
Q Consensus 795 ~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p 833 (1034)
...+.+..++...|...+..|+.+.+ -.|...++....
T Consensus 329 ~iep~eFqk~~~PLf~qia~c~sS~H-FQVAEraL~~wn 366 (457)
T KOG2085|consen 329 VIEPSEFQKIMVPLFRQIARCVSSPH-FQVAERALYLWN 366 (457)
T ss_pred hcCHHHHHHHhHHHHHHHHHHcCChh-HHHHHHHHHHHh
Confidence 77777777777777777777765543 134444444433
No 97
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=26.85 E-value=1.3e+03 Score=28.59 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhh
Q 001671 993 NRIKVHLNALKK 1004 (1034)
Q Consensus 993 seLk~~L~eL~~ 1004 (1034)
+++++|+..|-.
T Consensus 482 ~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 482 EEMEPHLEQLTS 493 (516)
T ss_pred HhhhhHhhhccH
Confidence 566677766654
No 98
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=26.82 E-value=1.6e+03 Score=29.62 Aligned_cols=74 Identities=11% Similarity=0.203 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHH-------------HhcccCCc--hHHHHHH
Q 001671 765 VRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMR-------------CVRDQNGN--HVIQKCI 829 (1034)
Q Consensus 765 r~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~e-------------L~kDq~GN--hVIQKlL 829 (1034)
.+.|.+.+.+.+...+. .+++.++. .+.+.+++....|...+.+ ++.|.-+. .+.+++|
T Consensus 514 l~~lA~~l~p~l~~~~~-----~~~~~~~~-~~~~~rr~~~~~lq~k~~~l~~n~~LfeKgl~lF~dd~~t~~~L~khLL 587 (803)
T PLN03083 514 LKHLADHLRPMLINSLK-----ERRKALFT-ENAERRRRLLDNLQKKIDESFLNMQLYEKALDLFEDDQSTSVVLHRHLL 587 (803)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchHHHHHHHH
Confidence 34444444444444333 34677777 6667776666665554444 44455554 5556666
Q ss_pred hhCChhHHHHHHHHH
Q 001671 830 ECVPEDAIQFIVLTF 844 (1034)
Q Consensus 830 E~~p~e~~q~Ii~~L 844 (1034)
+..-.+....++..+
T Consensus 588 kT~~~~i~n~l~~~~ 602 (803)
T PLN03083 588 RTTAAEIADTLLHTL 602 (803)
T ss_pred HhhhhHHHHHHHHHH
Confidence 654444444444433
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.79 E-value=5.4e+02 Score=33.84 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhCCCchH
Q 001671 982 TCDDQQLELILNRIKVHLNALKKYTYGKH 1010 (1034)
Q Consensus 982 ~~Dd~qRe~ILseLk~~L~eL~~s~yGk~ 1010 (1034)
..+......+++.|..-+..++.+..-+.
T Consensus 325 ~~s~~~L~r~ie~l~ea~~~lrgn~nprL 353 (824)
T PRK07764 325 RLGPAELTRAADVVNDGLTEMRGATSPRL 353 (824)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhCCCcHH
Confidence 33555566677777777666666554443
No 100
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=26.37 E-value=1.3e+03 Score=28.53 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=11.0
Q ss_pred HHhhCChhhHHHHHHHHHHHHHH
Q 001671 901 VLEHGKPHERSAIIKKLTGQIVQ 923 (1034)
Q Consensus 901 LLe~~~~keR~~IIe~L~g~Iv~ 923 (1034)
+++....++...|+..|...+++
T Consensus 433 l~e~l~~EeL~~ll~diaP~~iq 455 (516)
T KOG2956|consen 433 LFERLSAEELLNLLPDIAPCVIQ 455 (516)
T ss_pred HHhhcCHHHHHHhhhhhhhHHHH
Confidence 33444445545555555554444
No 101
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=25.38 E-value=3e+02 Score=32.85 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhCCCcCHHHHHhhhcC-CHHHHHHHHHHHHHhHHhhh
Q 001671 697 LSEIAGHVVEFSADQYGSRFIQQKLETA-TTEEKNMVFQEIMPQALSLM 744 (1034)
Q Consensus 697 LseI~G~ivELa~Dq~GSRvLQklLe~a-s~Eqr~~If~EI~p~~leLm 744 (1034)
...+++++.+.+.+.+--.+.+.+-... .....-.++++|+..+..|.
T Consensus 21 ~~~~~~~vk~~~~~afWd~l~~el~~~~~~~~~~~~Ll~~ike~L~~ll 69 (441)
T PF05794_consen 21 EDSLEGRVKETMHKAFWDALREELEQDPPDYSRLPQLLEEIKEILLSLL 69 (441)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHhc
Confidence 3456666666666555555555544442 22334455555555555444
No 102
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=25.07 E-value=7.6e+02 Score=25.32 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHhcCCCCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCCc
Q 001671 930 ASNVIEKCLSFGTPAERQALV-NEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYG 1008 (1034)
Q Consensus 930 GS~VVEKcL~~as~k~Rk~II-keLlg~~~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L~eL~~s~yG 1008 (1034)
+=.++|.|.+.|+......|. ++|+ +.|..|+.++ .+...+++|++-|..=.......+.=
T Consensus 57 AL~LLe~~vkNCG~~fh~evask~Fl------~eL~kl~~~~------------~~~~Vk~kil~li~~W~~~f~~~~~l 118 (144)
T cd03568 57 ALTLLDACAENCGKRFHQEVASRDFT------QELKKLINDR------------VHPTVKEKLREVVKQWADEFKNDPSL 118 (144)
T ss_pred HHHHHHHHHHHCCHHHHHHHhhHHHH------HHHHHHhccc------------CCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 446788888887766655544 3444 3455666655 45566777777777666667666666
Q ss_pred hHHHHHHHHHHhccc
Q 001671 1009 KHIVARVEKLVAAGE 1023 (1034)
Q Consensus 1009 k~IV~klekli~~ge 1023 (1034)
+.|.....+|...|-
T Consensus 119 ~~i~~~y~~L~~~G~ 133 (144)
T cd03568 119 SLMSDLYKKLKNEGP 133 (144)
T ss_pred HHHHHHHHHHHHcCC
Confidence 666666666666553
No 103
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=25.06 E-value=1.9e+03 Score=29.86 Aligned_cols=37 Identities=5% Similarity=0.118 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcCCHHH
Q 001671 837 IQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKT 873 (1034)
Q Consensus 837 ~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~d~~~ 873 (1034)
.+.+++.+.........+.--.-+|+.++-.|..|..
T Consensus 583 M~~~Le~i~rkK~a~~lDsr~~~~iENay~~~~PPe~ 619 (1128)
T KOG2051|consen 583 MRVFLEQIKRKKRASALDSRQATLIENAYYLCNPPER 619 (1128)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHhHHhccChhh
Confidence 3445666665555555555556788888888876654
No 104
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=25.04 E-value=4.5e+02 Score=27.01 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=31.5
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHHHHHH
Q 001671 715 RFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT 773 (1034)
Q Consensus 715 RvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~ 773 (1034)
..+.-.|+-.-+...-.||+.+.. ..--.+..|+..|+.+++....++...+++.+.
T Consensus 15 ~Al~LAl~L~~P~~ll~i~~~~~~--~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir 71 (141)
T PF08625_consen 15 EALRLALKLDHPFRLLKILKDLLE--TEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIR 71 (141)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHh--cccccccchHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334445555555555556655543 111122236677777777777777776666553
No 105
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=24.78 E-value=7e+02 Score=29.94 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=10.6
Q ss_pred HHHHHhcCchHHHHHHHHHh
Q 001671 920 QIVQMSQQKFASNVIEKCLS 939 (1034)
Q Consensus 920 ~Iv~LS~~K~GS~VVEKcL~ 939 (1034)
.|..+...|||-..+..|..
T Consensus 102 ~i~~~f~~kYGk~f~~~a~~ 121 (388)
T KOG2027|consen 102 EIRDLFVKKYGKEFVKAAIE 121 (388)
T ss_pred HHHHHHHHHHhHHHHHHHHh
Confidence 34444555666555555554
No 106
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.59 E-value=1.3e+03 Score=27.71 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=24.3
Q ss_pred HHHHhhCChhHHHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcCCHH
Q 001671 826 QKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEK 872 (1034)
Q Consensus 826 QKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~d~~ 872 (1034)
..+++.++++....+...+...+....... -..|.++.+..+.++.
T Consensus 280 ~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~ 325 (409)
T PF01603_consen 280 EEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEY 325 (409)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHH
Confidence 345555666556666555555544433332 2567777777766553
No 107
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=24.28 E-value=9.4e+02 Score=28.93 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHH
Q 001671 870 DEKTQSIMMDEILQS 884 (1034)
Q Consensus 870 d~~~r~~LleeIl~~ 884 (1034)
....+..++.||...
T Consensus 142 ~~e~k~k~lkEIA~e 156 (388)
T KOG2027|consen 142 PKELKEKYLKEIAKE 156 (388)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455566666553
No 108
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=24.05 E-value=9.7e+02 Score=29.28 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=38.4
Q ss_pred CccccchHHHHHHHHHHHhhCCCcCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhccccccchhhhhcccCCHHHHHHHH
Q 001671 690 NKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELA 769 (1034)
Q Consensus 690 neer~~~LseI~G~ivELa~Dq~GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~s~eqr~~Ll 769 (1034)
++++|...-++.|++ |.||.++--.|.....-.--.--+.|..-.-+++..-+|--+++ -+..++.+..+.+.
T Consensus 212 d~ek~q~vidVagkv------Ql~~E~vamalD~fq~gRai~aar~i~k~ae~vlk~g~ge~L~e-ai~~gs~e~i~~lA 284 (473)
T PRK15362 212 DHDKCQAIIDVASKI------QLGCEIVAMALDVFQIGRAFMATRGIAKAAEKVLDSGAGEELVE-RMVGGSEEAIEELA 284 (473)
T ss_pred CHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHHHHH-HHHhccHHHHHHHH
Confidence 446666666667665 33344333332221111001111122222333444444433333 45566677777777
Q ss_pred HHHHHHHHHhh
Q 001671 770 DQLTGHVLTLS 780 (1034)
Q Consensus 770 e~L~g~V~eLs 780 (1034)
+.+-.++.+..
T Consensus 285 ~~~GkqVs~qv 295 (473)
T PRK15362 285 EEFGKQVSEQV 295 (473)
T ss_pred HHHHHHHHHHH
Confidence 77766655443
No 109
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=23.99 E-value=3.4e+02 Score=30.01 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=14.3
Q ss_pred HHHHHHHhHHHhhcCCCCchHHHH
Q 001671 840 IVLTFYDQVVTLSTHPYGCRVIQR 863 (1034)
Q Consensus 840 Ii~~L~g~lv~Ls~hkyGS~VIQk 863 (1034)
+......-+..++.++.|-.++++
T Consensus 139 l~~~Yf~~IG~lS~~~~Gl~lLe~ 162 (226)
T PF14666_consen 139 LSRGYFLFIGVLSSTPNGLKLLER 162 (226)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHH
Confidence 333344445667888888666654
No 110
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=23.88 E-value=1.4e+03 Score=27.92 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred cCHHHHHhhhcCCHHHHHHHHHHHHHhHHhhhcc-------ccccchhhhhcccCCHHHHHHHHH----HHHHHHH----
Q 001671 713 GSRFIQQKLETATTEEKNMVFQEIMPQALSLMTD-------VFGNYVIQKFFEHGTASQVRELAD----QLTGHVL---- 777 (1034)
Q Consensus 713 GSRvLQklLe~as~Eqr~~If~EI~p~~leLmtD-------~fGNhVIQKLLe~~s~eqr~~Lle----~L~g~V~---- 777 (1034)
++|++-++...++..--...+.-....+..+|.. .+.-+++|.++.. ++.|-.++. .+.-.+.
T Consensus 134 ~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~ 211 (442)
T KOG2759|consen 134 SFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTK 211 (442)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccC
Q ss_pred --------------------HhhhcccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCChhHH
Q 001671 778 --------------------TLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAI 837 (1034)
Q Consensus 778 --------------------eLs~hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~ 837 (1034)
.++.+.--..+||.+.+.+....+++++.-+..-+..|+...--..+-+.....+
T Consensus 212 ~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m----- 286 (442)
T KOG2759|consen 212 CGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM----- 286 (442)
T ss_pred cchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH-----
Q ss_pred HHHHHHHHHhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHh-cCcchhHHHHHHHhhCChhhHHHHHHH
Q 001671 838 QFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLA-QDQYGNYVVQHVLEHGKPHERSAIIKK 916 (1034)
Q Consensus 838 q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La-~DqyGNyVVQ~LLe~~~~keR~~IIe~ 916 (1034)
+...+...+-.|...+|.-.=|..-++. |-+++.+....|. .|.|-+-|-...|+-.+.+.
T Consensus 287 --v~~~v~k~l~~L~~rkysDEDL~~di~~---------L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk------- 348 (442)
T KOG2759|consen 287 --VLCKVLKTLQSLEERKYSDEDLVDDIEF---------LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK------- 348 (442)
T ss_pred --HhcCchHHHHHHHhcCCCcHHHHHHHHH---------HHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc-------
Q ss_pred HHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHH------------------HHH
Q 001671 917 LTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYV------------------VQK 978 (1034)
Q Consensus 917 L~g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyV------------------VQk 978 (1034)
..+|-+-=+.++-+ +.-+--+++.+++...++ +.+..+|++-.|.|| |..
T Consensus 349 ---------~e~FW~eNa~rlne--nnyellkiL~~lLe~s~D-p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~ 416 (442)
T KOG2759|consen 349 ---------SEKFWRENADRLNE--NNYELLKILIKLLETSND-PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMN 416 (442)
T ss_pred ---------ccchHHHhHHHHhh--ccHHHHHHHHHHHhcCCC-CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHHH
Q 001671 979 VLETCDDQQLELILNRIKVHL 999 (1034)
Q Consensus 979 LLd~~Dd~qRe~ILseLk~~L 999 (1034)
++.+-|+..|..-+..+..-+
T Consensus 417 Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 417 LLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HhcCCCchHHHHHHHHHHHHH
No 111
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=23.14 E-value=1.2e+03 Score=27.08 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=54.6
Q ss_pred hhhcCCHHHHHHHHHHHHHhHHhhhcccccc-chhhhhcccC-CHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCC
Q 001671 720 KLETATTEEKNMVFQEIMPQALSLMTDVFGN-YVIQKFFEHG-TASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVE 797 (1034)
Q Consensus 720 lLe~as~Eqr~~If~EI~p~~leLmtD~fGN-hVIQKLLe~~-s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s 797 (1034)
.|..-+.++.+.|+.+|...+..-..-..|. -.++++++.+ .++.-..|++.+... . ....++ .|..++
T Consensus 46 ~l~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~-------~-~~~~~~-~L~~~~ 116 (334)
T PRK07194 46 RLSGIKVDQARQVLQRFFDDYREQSGINGASRSYLQRTLNKALGGDIAKSLINSIYGD-------E-IRHRMQ-RLQWVD 116 (334)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCHHHHHHHHHHHhcc-------c-cCchHH-HHHCCC
Confidence 3455677777777777766654332222222 2334444333 333444444444321 1 112333 345566
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCChhHHHHHHH
Q 001671 798 LDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVL 842 (1034)
Q Consensus 798 ~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~q~Ii~ 842 (1034)
+++...++..=.+....++...-+.-.--++|..++++.+..|+.
T Consensus 117 ~~~la~~l~~EhPQ~iAiiL~~L~~e~AA~VL~~Lpe~~~~~v~~ 161 (334)
T PRK07194 117 PQQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQDDILY 161 (334)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 666555554434444444444444444455555565555544443
No 112
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.12 E-value=1.4e+03 Score=30.25 Aligned_cols=12 Identities=0% Similarity=-0.080 Sum_probs=6.4
Q ss_pred ccchhhhhcccC
Q 001671 749 GNYVIQKFFEHG 760 (1034)
Q Consensus 749 GNhVIQKLLe~~ 760 (1034)
-+.|+..++.+|
T Consensus 159 ~~KIp~TIrSRC 170 (830)
T PRK07003 159 PQKIPVTVLSRC 170 (830)
T ss_pred hhhccchhhhhe
Confidence 345555555554
No 113
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=2.1e+03 Score=29.69 Aligned_cols=29 Identities=7% Similarity=0.264 Sum_probs=18.9
Q ss_pred hHHHHHHhhCChhHHHHHHHHHHHhHHHh
Q 001671 823 HVIQKCIECVPEDAIQFIVLTFYDQVVTL 851 (1034)
Q Consensus 823 hVIQKlLE~~p~e~~q~Ii~~L~g~lv~L 851 (1034)
++|..+++.++.+..++|...+.+-++.+
T Consensus 719 ~~L~~L~~~~~~e~~~~i~k~I~EvIL~~ 747 (1176)
T KOG1248|consen 719 KCLKRLLKLLSAEHCDLIPKLIPEVILSL 747 (1176)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777766665544443
No 114
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=22.74 E-value=1.4e+03 Score=27.67 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=21.7
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHh
Q 001671 905 GKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLS 939 (1034)
Q Consensus 905 ~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~ 939 (1034)
.+++...++|..+.-.+.=++..-.+|+.|+-+-+
T Consensus 209 sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~ 243 (460)
T KOG2213|consen 209 SDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNK 243 (460)
T ss_pred CChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHh
Confidence 34555566666666666666776667776665544
No 115
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=22.70 E-value=1.9e+03 Score=29.08 Aligned_cols=45 Identities=7% Similarity=0.132 Sum_probs=36.2
Q ss_pred HhcccCCchHHHHHHhhCChhHHHHHHHHHHHhHHHhhcCCCCch
Q 001671 815 CVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859 (1034)
Q Consensus 815 L~kDq~GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~ 859 (1034)
.+-+-.+++-.|-|+.+-....+..+++.+..++-.++.|.+.+.
T Consensus 174 ~lY~~ia~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~ 218 (988)
T KOG2072|consen 174 ALYHDIARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQST 218 (988)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 344556778888899988888888999999999999998887543
No 116
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=22.70 E-value=3.7e+02 Score=32.00 Aligned_cols=67 Identities=15% Similarity=0.339 Sum_probs=34.4
Q ss_pred cchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCchhHHHhhcCCc
Q 001671 892 QYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQF 971 (1034)
Q Consensus 892 qyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg~~~~~e~L~~La~D~y 971 (1034)
.+..|++..+-.+|-|. |...++.+...+.+=+....+..+|+. ++.++ .+.++|+--.
T Consensus 99 ~l~~~i~~~l~~~CAP~-RD~~v~~l~~~~~~~~~~~~~~~~V~~-------------lr~if-------~~le~MklD~ 157 (441)
T PF05794_consen 99 KLARFIISLLKKLCAPM-RDEEVKALVEKIEEGCTESSATDIVDG-------------LRFIF-------EILELMKLDM 157 (441)
T ss_pred HHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHhccccCCHHHHHHH-------------HHHHH-------HHHHHHHHHH
Confidence 44556666666666554 344455665555433333344444432 22223 2445666666
Q ss_pred hhHHHHHH
Q 001671 972 ANYVVQKV 979 (1034)
Q Consensus 972 GNyVVQkL 979 (1034)
+||.|+.+
T Consensus 158 AN~~i~~~ 165 (441)
T PF05794_consen 158 ANFQIRSL 165 (441)
T ss_pred HHHHHHHH
Confidence 77766543
No 117
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=22.04 E-value=2.7e+03 Score=30.72 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHH---HHHhcCCC----------CchhHHHhhcCCc------hhHHHHHHHhcCCHHHHHH
Q 001671 930 ASNVIEKCLSFGTPAERQALV---NEMLGSIE----------ENEPLQVMMKDQF------ANYVVQKVLETCDDQQLEL 990 (1034)
Q Consensus 930 GS~VVEKcL~~as~k~Rk~II---keLlg~~~----------~~e~L~~La~D~y------GNyVVQkLLd~~Dd~qRe~ 990 (1034)
|-..+.++++.++++.++.-. ..++.... .-+.+..+..+.- +...+-.++...+..++..
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS 689 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 556777777777766666533 33332111 1123334433321 2233333334345555555
Q ss_pred HHHH--HHHHHHHHhhCCCc---hHHHHHHHHHHhcccchhhcc
Q 001671 991 ILNR--IKVHLNALKKYTYG---KHIVARVEKLVAAGERRISIM 1029 (1034)
Q Consensus 991 ILse--Lk~~L~eL~~s~yG---k~IV~klekli~~ge~r~~~~ 1029 (1034)
+++. |.+ +-+|....-. ...+..+..++..++.+..+.
T Consensus 690 ~v~~GaV~p-L~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 690 YAAEDAIKP-LIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHcCCHHH-HHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 5553 444 3344433322 233445566666776655443
No 118
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=21.52 E-value=7.1e+02 Score=29.64 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhHHhhhc-cccccchhhhhcccCCHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhhCC
Q 001671 727 EEKNMVFQEIMPQALSLMT-DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVE 797 (1034)
Q Consensus 727 Eqr~~If~EI~p~~leLmt-D~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eLs~hkyGSrVVQklLe~~s 797 (1034)
-++..+++.+..-+..++. +.-....+..+++. ......+..|..+ ...||..|+-.++..+.
T Consensus 71 ~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~---s~L~~sL~~Il~n-----~~~FG~~v~s~a~~ivs 134 (379)
T PF06025_consen 71 YQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDS---SSLLSSLKHILEN-----PEVFGPSVFSLAINIVS 134 (379)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccccch---hhHHHHHHHHHhC-----ccccchHHHHHHHHHHH
Confidence 3567777777777777777 55555566666651 1111112211111 24788888888876544
No 119
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=21.45 E-value=6.7e+02 Score=25.17 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=32.6
Q ss_pred hcCCchhHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHhcc
Q 001671 967 MKDQFANYVVQKVLETCDDQ---QLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAG 1022 (1034)
Q Consensus 967 a~D~yGNyVVQkLLd~~Dd~---qRe~ILseLk~~L~eL~~s~yGk~IV~klekli~~g 1022 (1034)
+...|-+.++.-+-...... .|++|++.|..=-......+.-+.|.+..+.|-..|
T Consensus 82 ~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 82 ASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp TSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHCc
Confidence 33334444333333333433 577777777776667777777777777666665443
No 120
>COG2733 Predicted membrane protein [Function unknown]
Probab=20.90 E-value=1.5e+03 Score=27.33 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred cccccHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHhhCChhHH-HHHHHHHHHhHHHhhcCCCCc--
Q 001671 782 QMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAI-QFIVLTFYDQVVTLSTHPYGC-- 858 (1034)
Q Consensus 782 hkyGSrVVQklLe~~s~eqr~~LV~EL~~~i~eL~kDq~GNhVIQKlLE~~p~e~~-q~Ii~~L~g~lv~Ls~hkyGS-- 858 (1034)
+..+-++++-+...+..-....+-.-++..+.+-+...|-....-++|+++-.+.. +.|++.+.+.+........-.
T Consensus 125 ~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~~i~e~~~~~~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~~~v~~~ 204 (415)
T COG2733 125 QRVSQETLKLLSQLLELLDDDDIQRVIKRAVIRAIAEVYLGPTAGRVLESLTADDRHQALLDKLIDRLIRWLLNDKVREF 204 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhHHH
Q ss_pred --hHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHHHHHHHHHHHhcCchHHHHHHH
Q 001671 859 --RVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEK 936 (1034)
Q Consensus 859 --~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv~LS~~K~GS~VVEK 936 (1034)
.+|.++++....---....+..+.+.. ...-++-.++.++..-+-+.|+..-..+.+-+..|-.++---.=+|+
T Consensus 205 i~~~i~r~~~ee~p~f~~~~~~~~v~~~~----I~~a~~~~~D~v~~~p~h~~rk~~~R~~~~~i~~L~~Dp~~~~r~e~ 280 (415)
T COG2733 205 IAAVIVRYLEEEHPLFAPIIIVSLVGKRD----ISDAVNSFLDEVRRDPDHKMRKDFDRFLFDLIDDLYHDPGMAARAEA 280 (415)
T ss_pred HHHHHHHHHHhcCccchhhhhHHHHhhch----HHHHHHHHHHHHHhCcCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q ss_pred HHhc-CCHHHHHHHHHHHhcCCCCchhHHHhhcCCchhHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHHh---
Q 001671 937 CLSF-GTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLET---------CDDQQLELILNRIKVHLNALK--- 1003 (1034)
Q Consensus 937 cL~~-as~k~Rk~IIkeLlg~~~~~e~L~~La~D~yGNyVVQkLLd~---------~Dd~qRe~ILseLk~~L~eL~--- 1003 (1034)
+-.+ -........+..|.++. ..++..--+.-++.|=.++... .|+..|.++=+.+......|.
T Consensus 281 iK~~~~~~~~i~~~~~~~w~~~---~~~l~~D~e~~~s~l~~~l~~~~~~~Ge~l~~D~~lr~kln~~~~~aa~~l~e~~ 357 (415)
T COG2733 281 IKSYLKEDEAIATAAGDMWTSL---SEWLKEDYESEDSMLRKRLARAVQSVGEELIADDALRAKLNEHLVQAAERLAEEK 357 (415)
T ss_pred HHHHHhcChHHHHHHHHHHHHH---HHHHHhcccCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hCCCchHHHHHHHH
Q 001671 1004 KYTYGKHIVARVEK 1017 (1034)
Q Consensus 1004 ~s~yGk~IV~klek 1017 (1034)
...-|++|.+.+++
T Consensus 358 ~~~it~~I~dTv~~ 371 (415)
T COG2733 358 HAEITKHISDTVKR 371 (415)
T ss_pred hHHHHHHHHHHHhh
No 121
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=20.59 E-value=9.3e+02 Score=24.71 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=11.0
Q ss_pred hhHHHHHHHhhCChhhHHHHHHHHH
Q 001671 894 GNYVVQHVLEHGKPHERSAIIKKLT 918 (1034)
Q Consensus 894 GNyVVQ~LLe~~~~keR~~IIe~L~ 918 (1034)
|+-.|..++...+.++...+++.++
T Consensus 47 g~~~l~~~i~~L~~~~l~~LL~~ir 71 (141)
T PF08625_consen 47 GSEELDEVIKKLDDEQLEKLLRFIR 71 (141)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 122
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.50 E-value=2.3e+03 Score=29.18 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHhhhcCCHH---HHHHHHHHHHHhHHhhhccccccchhhhhcccC-----CHHHHHHHHHHHHH---H---HHHhh
Q 001671 715 RFIQQKLETATTE---EKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHG-----TASQVRELADQLTG---H---VLTLS 780 (1034)
Q Consensus 715 RvLQklLe~as~E---qr~~If~EI~p~~leLmtD~fGNhVIQKLLe~~-----s~eqr~~Lle~L~g---~---V~eLs 780 (1034)
.+++..++..+.. +.-+.|.|+.....++..+.++ .|||-.++.+ .+..|...++.|.- . .....
T Consensus 209 ~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~ 287 (1075)
T KOG2171|consen 209 NVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL 287 (1075)
T ss_pred HHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence 5677778777764 3344444444443344333322 2444444443 34455555544431 1 22222
Q ss_pred hcccccHHHHHHHhhCC
Q 001671 781 LQMYGCRVIQKAIEVVE 797 (1034)
Q Consensus 781 ~hkyGSrVVQklLe~~s 797 (1034)
.+ ||-..+-.++...+
T Consensus 288 ~~-~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 288 AL-LGHTLVPVLLAMMT 303 (1075)
T ss_pred hh-hhccHHHHHHHhcC
Confidence 23 66666666666554
No 123
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=20.26 E-value=1.9e+03 Score=28.09 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=78.8
Q ss_pred HHHHHHhcccC---CchHHHHHHhhCChhHHHHHHHHHHHhHHHhhcCCCCchHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 001671 810 GHIMRCVRDQN---GNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH-DEKTQSIMMDEILQSV 885 (1034)
Q Consensus 810 ~~i~eL~kDq~---GNhVIQKlLE~~p~e~~q~Ii~~L~g~lv~Ls~hkyGS~VIQklLe~~~-d~~~r~~LleeIl~~l 885 (1034)
.++..|+.|.+ +.|-|..+|+.+.++.+..++..+..-+-+++- -+--.+|+.+=..|- -+..+..+++-+...+
T Consensus 343 ~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD-~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L 421 (898)
T COG5240 343 KEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSD-GFKIIAIDALRSLSLLFPSKKLSYLDFLGSSL 421 (898)
T ss_pred hhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhcc-CceEEeHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 34556777765 568899999999999999888877665555553 333445554433332 1333444555444444
Q ss_pred HHHhcCcchhHHHHHHHhhC--ChhhHHHHHHHHHHHHHHHhcCchHHHHHH
Q 001671 886 CMLAQDQYGNYVVQHVLEHG--KPHERSAIIKKLTGQIVQMSQQKFASNVIE 935 (1034)
Q Consensus 886 ~~La~DqyGNyVVQ~LLe~~--~~keR~~IIe~L~g~Iv~LS~~K~GS~VVE 935 (1034)
+.=--=.|-+|.|..+.+.. .|+.|+.+++.|+..|.+--.++..-+++-
T Consensus 422 ~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~ 473 (898)
T COG5240 422 LQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILG 473 (898)
T ss_pred HhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 43222245677888777633 478888888888888777666666666553
No 124
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=20.22 E-value=56 Score=37.33 Aligned_cols=33 Identities=36% Similarity=0.340 Sum_probs=23.9
Q ss_pred hcchhhhhhhhhhh-ccccCCCCCCchhhhhhhhhh
Q 001671 40 VNSASAADLEKELN-IFRSGSAPPTVEGSLSSIDGL 74 (1034)
Q Consensus 40 ~~~~~~~~~~~~~~-~~RSgSAPPtveGsl~a~g~l 74 (1034)
|+-+.+.. +-.+ -||+||||=-+-+|+.|.+.+
T Consensus 295 ~~p~tGs~--~P~~~~fr~gS~~~~~p~s~~A~r~~ 328 (408)
T KOG0844|consen 295 VRPATGSN--GPGNGAFRSGSALNGSPTSPSAARSL 328 (408)
T ss_pred cccccCCC--CCCccccccccccCCCCCChhhhcCC
Confidence 34444444 2344 699999999999999998887
No 125
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=20.06 E-value=2e+03 Score=28.36 Aligned_cols=267 Identities=11% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH----------hHHhhhccccccchhhhhcccCCHHHHHHHHHHHHHHHHHh-----------------
Q 001671 727 EEKNMVFQEIMP----------QALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTL----------------- 779 (1034)
Q Consensus 727 Eqr~~If~EI~p----------~~leLmtD~fGNhVIQKLLe~~s~eqr~~Lle~L~g~V~eL----------------- 779 (1034)
++.++|+.+|.. ++..+......++++| ++++.+=+..|..+|..-
T Consensus 149 ~dl~~iW~~i~kP~~~~~~~~~d~Fd~~f~~LpH~~~~-------~e~F~~~v~~Lr~rf~~~~~~~~~~~~~~y~~~iP 221 (742)
T PF05879_consen 149 EDLEKIWDSISKPEGFENSSLSDFFDLEFTALPHKILQ-------PEKFNEDVAKLRQRFVDSKNIEDGLFKPEYHRRIP 221 (742)
T ss_pred HHHHHHHHhccCcccccCCChhheeeeeeeccCchhhh-------HHHHHHHHHHHHHHHhccCcCCCCCCchhhcCCCC
Q ss_pred --hhcccccHHHHHHHhh--CCHHHHHHHH-----HHHHHHHHHHhcccCCchH-----HHHHHhhCChhHHHHHHHHHH
Q 001671 780 --SLQMYGCRVIQKAIEV--VELDQQTQMV-----KELDGHIMRCVRDQNGNHV-----IQKCIECVPEDAIQFIVLTFY 845 (1034)
Q Consensus 780 --s~hkyGSrVVQklLe~--~s~eqr~~LV-----~EL~~~i~eL~kDq~GNhV-----IQKlLE~~p~e~~q~Ii~~L~ 845 (1034)
-+..|...|++.+-+. ++...+..|+ +|+...++..+...+..+. ++.+.....-+.....+..+.
T Consensus 222 ~dG~~~y~~~iW~~I~~nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~~~~~~~~~~~fg~~~~~l~ 301 (742)
T PF05879_consen 222 ADGFSMYAENIWEQIKNNKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSELEEAVQGGVVEDFGKKLKSLR 301 (742)
T ss_pred hHHhHHHHHHHHHHHHhCccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHH
Q ss_pred HhHHHhhcCCCCchHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhCChhhHHHHHHHHHHHHH-HH
Q 001671 846 DQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIV-QM 924 (1034)
Q Consensus 846 g~lv~Ls~hkyGS~VIQklLe~~~d~~~r~~LleeIl~~l~~La~DqyGNyVVQ~LLe~~~~keR~~IIe~L~g~Iv-~L 924 (1034)
..+++ ..+..+++=-+.+.+. .+..|...|.. .++.++..--.+.++.+++.+...+. .+
T Consensus 302 ~~~L~-~YD~~AsrY~~~V~~~-----Kr~eL~~~i~~-------------~l~~lf~~qL~~L~~~~l~~Fk~~l~~~l 362 (742)
T PF05879_consen 302 DKALE-EYDEEASRYHKSVYQE-----KRQELESKIDS-------------ELQPLFQKQLKHLRKKLLESFKEALSSAL 362 (742)
T ss_pred HHHHH-HHHHHHHHHhHHHHHH-----HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hcCchHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCchhHHHhhcCCchhHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001671 925 SQQKFASNVIEKCLSFGTPAERQALVNEMLGSI-----EENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHL 999 (1034)
Q Consensus 925 S~~K~GS~VVEKcL~~as~k~Rk~IIkeLlg~~-----~~~e~L~~La~D~yGNyVVQkLLd~~Dd~qRe~ILseLk~~L 999 (1034)
-...--+..+..|...+-....+..-....... +..-....--.+.+...+-.+-+...-....+.+-..|.+.+
T Consensus 363 k~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws~se~~~~~L~~dLd~~~~~lR~~el~~l~~~~eK~l~~~l~e~v 442 (742)
T PF05879_consen 363 KSGEDFAEAVRECKQSALEEFEESAEDLVIEGADWSYSEEEREKLEEDLDEHSSKLRKEELNELVARIEKKLKSELKEPV 442 (742)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHhhCCCchHHHHHHHHHHh
Q 001671 1000 NALKKYTYGKHIVARVEKLVA 1020 (1034)
Q Consensus 1000 ~eL~~s~yGk~IV~klekli~ 1020 (1034)
..+-. .-+.-+|.+|.+.+.
T Consensus 443 ~~~l~-~~~~d~Wd~I~~~f~ 462 (742)
T PF05879_consen 443 ESLLE-NPSPDMWDRIRKLFE 462 (742)
T ss_pred HHHHh-CCChhhHHHHHHHHH
Done!