Query 001671
Match_columns 1034
No_of_seqs 276 out of 1654
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 17:24:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001671.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_966-970//hhsearch_pdb/001671hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 1.0 1 1 533.8 24.4 343 679-1022 3-346 (351)
2 3k49_A MRNA-binding protein PU 1.0 1 1 531.2 22.1 346 678-1024 2-366 (369)
3 3k62_A FEM-3 mRNA-binding fact 1.0 1 1 514.5 25.6 344 663-1022 4-406 (412)
4 3v71_A PUF (pumilio/FBF) domai 1.0 1 1 494.1 24.2 324 695-1018 11-381 (382)
5 3bwt_A Protein PUF4; pumilio, 1.0 1 1 474.8 19.1 320 693-1016 4-332 (333)
6 3k49_A MRNA-binding protein PU 1.0 1 1 344.0 14.4 303 712-1021 3-326 (369)
7 3gvo_A Pumilio 2, pumilio homo 1.0 1 1 343.8 21.5 301 676-983 33-343 (351)
8 3bwt_A Protein PUF4; pumilio, 1.0 1 1 342.5 20.7 283 730-1021 5-297 (333)
9 3v71_A PUF (pumilio/FBF) domai 1.0 1 1 314.9 23.3 282 733-1021 13-329 (382)
10 3k62_A FEM-3 mRNA-binding fact 1.0 1 1 307.3 25.7 209 695-904 105-346 (412)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=1.00 E-value=1 Score=533.84 Aligned_cols=343 Identities=55% Similarity=0.936 Sum_probs=329.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCC
Q ss_conf 46779986301734421198889999998408774899999641199999999999998869852035443303425401
Q 001671 679 FASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFE 758 (1034)
Q Consensus 679 ~~s~LLeEf~sneer~~~LseI~GkiveLA~Dq~GSRvIQklLe~aS~Eer~~If~EI~p~i~eLmtD~fGShVIQKLLe 758 (1034)
-||.+||+|++++.+.+.|+++.|+++++|+||+|||+||++|++++.++++.||+++.+++.+||+|+||||||||+|+
T Consensus 3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle 82 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 82 (351)
T ss_dssp CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 84278999757898996899987499999269863699999971398999999999998858989718166299999996
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 38999999999998788989662244229999987507999999999999978989850567756899999629956899
Q 001671 759 HGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQ 838 (1034)
Q Consensus 759 ~gs~eqr~~Lie~Lkg~I~~Ls~dkyGSrVIQklLe~ls~eqr~~LV~EL~~~i~~LvkDq~GNhVIQKlLE~~p~e~~e 838 (1034)
+++++++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|++||.+++..|++|++||||||+||++++++.++
T Consensus 83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 09999999999998766998860788689999999967899999999985316999987101327999999768999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999999697841498876478898841599889999999999999987119541299999996089223999999999
Q 001671 839 FIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLT 918 (1034)
Q Consensus 839 ~Iid~L~g~iveLs~hkyGS~VIQklLe~~~~~~~r~~IIeeIl~~l~~La~DqyGNyVVQ~ILE~g~~keR~~Iie~L~ 918 (1034)
+|++.+.+++..+++|+|||+|+|++|+++. +.++..|++++.+++..|++|+|||||||++|+++.++.+..|++.++
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999998889999807574899999999789-999999999986549961899438799999999675344999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999921904899999999409999999999999518789-53599853088546999999740997899999999999
Q 001671 919 GQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEE-NEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV 997 (1034)
Q Consensus 919 g~IvsLS~~KfGS~VVEKlL~~~s~k~Rk~II~eLlg~~~~-~e~L~~La~D~fGNyVVQkLLe~~dd~qRe~IlseLk~ 997 (1034)
++++.|+++||||+|||+||+++++++|+.|+++++...++ ...+..|+.|+|||||||++|+.+++.+|+.|++.|++
T Consensus 242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~ 321 (351)
T 3gvo_A 242 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 321 (351)
T ss_dssp TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 88999854938899999999759999999999998612678872798806996267999999985899999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 8998951788458999999998405
Q 001671 998 HLNALKKYTYGKHIVARVEKLVAAG 1022 (1034)
Q Consensus 998 hL~eL~~s~yGk~IV~klekli~~g 1022 (1034)
++..|++++||++|++++||++...
T Consensus 322 ~~~~L~~~~~g~~i~~kl~~~~~~~ 346 (351)
T 3gvo_A 322 HITTLRKYTYGKHILAKLEKYYLKN 346 (351)
T ss_dssp GHHHHTTSTTTHHHHHHHHHHTC--
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 9999836984699999999987550
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=1.00 E-value=1 Score=531.19 Aligned_cols=346 Identities=42% Similarity=0.720 Sum_probs=328.5
Q ss_pred HHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 446779986301734-----421198889999998408774899999641199999999999998869852035443303
Q 001671 678 SFASSLLDEFKSNKT-----KCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752 (1034)
Q Consensus 678 ~~~s~LLeEf~snee-----r~~~LseI~GkiveLA~Dq~GSRvIQklLe~aS~Eer~~If~EI~p~i~eLmtD~fGShV 752 (1034)
-+||.+||+|+++.. |.+.++++.|+++++|+||+|||+||++|++++.++++.||+|+.+++.+||+|+|||||
T Consensus 2 ~~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~v 81 (369)
T 3k49_A 2 YHRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYV 81 (369)
T ss_dssp ---CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHH
T ss_pred CCCCHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 87525489986799865544460399999899999728723099999866299999999999999989998648511558
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 42540138999999999998788989662244229999987507999999999999978989850567756899999629
Q 001671 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECV 832 (1034)
Q Consensus 753 IQKLLe~gs~eqr~~Lie~Lkg~I~~Ls~dkyGSrVIQklLe~ls~eqr~~LV~EL~~~i~~LvkDq~GNhVIQKlLE~~ 832 (1034)
|||+|++++++++..|++.+.+++..|++|+|||||||++|++++.+++..++.||.+++..|++|++||||||+||+++
T Consensus 82 vQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~ 161 (369)
T 3k49_A 82 IQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETI 161 (369)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf 99999739999999999998620898851755489999999758999999999999999999951744554999999719
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH---
Q ss_conf 95689999999999697841498876478898841599889999999999999987119541299999996089223---
Q 001671 833 PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHE--- 909 (1034)
Q Consensus 833 p~e~~e~Iid~L~g~iveLs~hkyGS~VIQklLe~~~~~~~r~~IIeeIl~~l~~La~DqyGNyVVQ~ILE~g~~ke--- 909 (1034)
+++.+++|++.+.+++..|+.|++||+|+|+||+++. +..+..+++++.+.+..|+.|+|||||||++|+++.++.
T Consensus 162 ~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~-~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~ 240 (369)
T 3k49_A 162 PIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS-SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEM 240 (369)
T ss_dssp CGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999999999999678766829999998689-999999999999999999659729999999995389032235
Q ss_pred ---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-------CCCHHHHHHHCCCCHHHHHHHH
Q ss_conf ---999999999999999219048999999994099999999999995187-------8953599853088546999999
Q 001671 910 ---RSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSI-------EENEPLQVMMKDQFANYVVQKV 979 (1034)
Q Consensus 910 ---R~~Iie~L~g~IvsLS~~KfGS~VVEKlL~~~s~k~Rk~II~eLlg~~-------~~~e~L~~La~D~fGNyVVQkL 979 (1034)
+..|++.+.+++++|+++||||+|||+||.++++++|+.|+++++... .+++.+..|+.|+|||||||++
T Consensus 241 ~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~ 320 (369)
T 3k49_A 241 VDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKL 320 (369)
T ss_dssp HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 76799999999999999986157569999999839999999999998555643211235652799998473058999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 7409978999999999998998951-78845899999999840521
Q 001671 980 LETCDDQQLELILNRIKVHLNALKK-YTYGKHIVARVEKLVAAGER 1024 (1034)
Q Consensus 980 Le~~dd~qRe~IlseLk~hL~eL~~-s~yGk~IV~klekli~~ge~ 1024 (1034)
|+++++.+|+.|+++|++++.+|++ ++||++|++++||++...|.
T Consensus 321 l~~~~~~~~~~l~~~i~p~l~~L~~~~~~G~~~~~~~e~~~~~~~~ 366 (369)
T 3k49_A 321 VNVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAALVEN 366 (369)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHC-
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9967888999999999999999851466761599999999998754
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=1.00 E-value=1 Score=514.50 Aligned_cols=344 Identities=28% Similarity=0.548 Sum_probs=312.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHH
Q ss_conf 88888777899998344677998630173442119888--999999840877489999964119-999999999999886
Q 001671 663 VMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEI--AGHVVEFSADQYGSRFIQQKLETA-TTEEKNMVFQEIMPQ 739 (1034)
Q Consensus 663 ~~g~w~~~rg~~l~~~~~s~LLeEf~sneer~~~LseI--~GkiveLA~Dq~GSRvIQklLe~a-S~Eer~~If~EI~p~ 739 (1034)
..+.|+.++.+++... +.|.++ +|+++++|+||+||||||++|+++ +.++++.||+|+.++
T Consensus 4 ~~~~w~~~~~~~~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~ 67 (412)
T 3k62_A 4 VLPTWSLDSNGEMRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGR 67 (412)
T ss_dssp -CCGGGBCTTSSBCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSS
T ss_pred CCCCCHHCCCCCCCCC----------------CCHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 6864233026999987----------------849999748771999649756899999865089989999999999722
Q ss_pred ---HHHHHCCCCCCCHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHH-
Q ss_conf ---98520354433034254013899-------9999999998788989662244229999987507999999999999-
Q 001671 740 ---ALSLMTDVFGNYVIQKFFEHGTA-------SQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKEL- 808 (1034)
Q Consensus 740 ---i~eLmtD~fGShVIQKLLe~gs~-------eqr~~Lie~Lkg~I~~Ls~dkyGSrVIQklLe~ls~eqr~~LV~EL- 808 (1034)
+.+||+|+||||||||+|+++++ +++..|++.+.+++..|+.|+|||||||++|++++.+++..|+.||
T Consensus 68 ~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~ 147 (412)
T 3k62_A 68 KDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 147 (412)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 56799998372988999999984891123243999999999999999999817452499999999578889999999970
Q ss_pred -HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHCCCCCCHHHHHHHHHCCCH-----------HHH
Q ss_conf -9789898505677568999996299568999999999--96978414988764788988415998-----------899
Q 001671 809 -DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY--DQVVTLSTHPYGCRVIQRVLEHCHDE-----------KTQ 874 (1034)
Q Consensus 809 -~~~i~~LvkDq~GNhVIQKlLE~~p~e~~e~Iid~L~--g~iveLs~hkyGS~VIQklLe~~~~~-----------~~r 874 (1034)
.+++..|++|++|||||||||++++++.+++|++.+. +++.++++|+|||+|+|+||++|.++ .++
T Consensus 148 ~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr 227 (412)
T 3k62_A 148 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLR 227 (412)
T ss_dssp CSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHH
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 46018999719643699999999699999999999871413699985596359999999996674112200100038899
Q ss_pred H----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH-HHHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9----999999999998711954129999999608922-3999999-999999999219048999999994099999999
Q 001671 875 S----IMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH-ERSAIIK-KLTGQIVQMSQQKFASNVIEKCLSFGTPAERQA 948 (1034)
Q Consensus 875 ~----~IIeeIl~~l~~La~DqyGNyVVQ~ILE~g~~k-eR~~Iie-~L~g~IvsLS~~KfGS~VVEKlL~~~s~k~Rk~ 948 (1034)
. .++++|..++..|++|+|||||||++|+++.+. .+..|++ .|++++++||++||||+||||||+++++++|+.
T Consensus 228 ~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ 307 (412)
T 3k62_A 228 ERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAE 307 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999999999864842029999999629905579999999999889999604076899999998599999999
Q ss_pred HHHHHHCC-----CCCCHHHHHHHCCCCHHHHHHHHHHCCCHH--------------------HHHHHHHHHHHHHHHHH
Q ss_conf 99999518-----789535998530885469999997409978--------------------99999999999899895
Q 001671 949 LVNEMLGS-----IEENEPLQVMMKDQFANYVVQKVLETCDDQ--------------------QLELILNRIKVHLNALK 1003 (1034)
Q Consensus 949 II~eLlg~-----~~~~e~L~~La~D~fGNyVVQkLLe~~dd~--------------------qRe~IlseLk~hL~eL~ 1003 (1034)
|+++++.. ...++.+..|++|+|||||||++|+++++. .++.|+.++++|...|+
T Consensus 308 ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~ 387 (412)
T 3k62_A 308 MMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLS 387 (412)
T ss_dssp HHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999850357765451699998669936899999999754633220110122113445467899999999988788744
Q ss_pred HCCCCHHHHHHHHHHHHCC
Q ss_conf 1788458999999998405
Q 001671 1004 KYTYGKHIVARVEKLVAAG 1022 (1034)
Q Consensus 1004 ~s~yGk~IV~klekli~~g 1022 (1034)
+++||++|+++++++..++
T Consensus 388 ~~~~Gk~i~~~l~~~~~~~ 406 (412)
T 3k62_A 388 RFSSGKKMIETLANLRSTH 406 (412)
T ss_dssp TSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHCCC
T ss_conf 6997128999999752337
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=494.07 Aligned_cols=324 Identities=27% Similarity=0.530 Sum_probs=294.3
Q ss_pred CHHHHH--HHHHHHHHHCCCCCHHHHHHHHCCCHHH-HHHHHHHHH---HHHHHHHCCCCCCCHHHHHCCCCCHHHHHHH
Q ss_conf 119888--9999998408774899999641199999-999999998---8698520354433034254013899999999
Q 001671 695 FELSEI--AGHVVEFSADQYGSRFIQQKLETATTEE-KNMVFQEIM---PQALSLMTDVFGNYVIQKFFEHGTASQVREL 768 (1034)
Q Consensus 695 ~~LseI--~GkiveLA~Dq~GSRvIQklLe~aS~Ee-r~~If~EI~---p~i~eLmtD~fGShVIQKLLe~gs~eqr~~L 768 (1034)
+.|.++ +|+++++|+||+||||||++|+.++.++ ++.||+++. +++.+||+|+||||||||+|++++++++..+
T Consensus 11 ~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~l 90 (382)
T 3v71_A 11 ISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQREL 90 (382)
T ss_dssp CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHCCCEEHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf 74998840887700304871029999870438868999999999986277899996282887999999985999999999
Q ss_pred HHH-HHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH-
Q ss_conf 999-878898966224422999998750799999999999997-89898505677568999996299568999999999-
Q 001671 769 ADQ-LTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDG-HIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY- 845 (1034)
Q Consensus 769 ie~-Lkg~I~~Ls~dkyGSrVIQklLe~ls~eqr~~LV~EL~~-~i~~LvkDq~GNhVIQKlLE~~p~e~~e~Iid~L~- 845 (1034)
+.. +.+++..|+.|+|||||||++|++++.+++..|+.+|.+ ++..|++|++|||||||||++++++.+++|++.+.
T Consensus 91 i~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~ 170 (382)
T 3v71_A 91 LRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSS 170 (382)
T ss_dssp HHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHS
T ss_pred HHHHHCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 99973113988773750569999999978999999999985412669996185615199999997899999999999954
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHHCCCHHH----------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH--HHHHH
Q ss_conf -9697841498876478898841599889----------9999999999999871195412999999960892--23999
Q 001671 846 -DQVVTLSTHPYGCRVIQRVLEHCHDEKT----------QSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKP--HERSA 912 (1034)
Q Consensus 846 -g~iveLs~hkyGS~VIQklLe~~~~~~~----------r~~IIeeIl~~l~~La~DqyGNyVVQ~ILE~g~~--keR~~ 912 (1034)
+++..+++|+|||+|+|+||++|.++.+ ...|+++|..++..|++|+|||||||++|+++.+ +.|..
T Consensus 171 ~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ 250 (382)
T 3v71_A 171 GDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDT 250 (382)
T ss_dssp TTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf 53117682695115999999996887642114557899999999999998999864752019999998449974788999
Q ss_pred HHHH-HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CCCCHHHHHHHCCCCHHHHHHHHHHCCCHH
Q ss_conf 9999-9999999921904899999999409999999999999518-----789535998530885469999997409978
Q 001671 913 IIKK-LTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGS-----IEENEPLQVMMKDQFANYVVQKVLETCDDQ 986 (1034)
Q Consensus 913 Iie~-L~g~IvsLS~~KfGS~VVEKlL~~~s~k~Rk~II~eLlg~-----~~~~e~L~~La~D~fGNyVVQkLLe~~dd~ 986 (1034)
|++. |.++++.|+++||||+||||||+++++++|+.|+++++.. ...++.|..|++|+|||||||++|+++++.
T Consensus 251 ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~ 330 (382)
T 3v71_A 251 IIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAA 330 (382)
T ss_dssp HHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899996570675999999986999999999999982134555565258999877997139999999974340
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf -------------------99999999999899895178845899999999
Q 001671 987 -------------------QLELILNRIKVHLNALKKYTYGKHIVARVEKL 1018 (1034)
Q Consensus 987 -------------------qRe~IlseLk~hL~eL~~s~yGk~IV~klekl 1018 (1034)
.++.|++++++|+..|+.++||+||+++++|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 331 LIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp CC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 234100123056776546899999999998898761188638999998733
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=1.00 E-value=1 Score=474.84 Aligned_cols=320 Identities=30% Similarity=0.485 Sum_probs=294.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 42119888999999840877489999964119999999999999886985203544330342540138999999999998
Q 001671 693 KCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQL 772 (1034)
Q Consensus 693 r~~~LseI~GkiveLA~Dq~GSRvIQklLe~aS~Eer~~If~EI~p~i~eLmtD~fGShVIQKLLe~gs~eqr~~Lie~L 772 (1034)
++..+++++|+++++++||+|||+||++|++++.++++.||+|+.+++.+||+|+||||||||+|++++++++..|++.+
T Consensus 4 ~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~ 83 (333)
T 3bwt_A 4 ADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKIS 83 (333)
T ss_dssp TTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 54869999979999965847139999987629999999999999988999955853279999999629999999999998
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7889896622442299999875079-999999999999789898505677568999996299568999999999969784
Q 001671 773 TGHVLTLSLQMYGCRVIQKAIEVVE-LDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTL 851 (1034)
Q Consensus 773 kg~I~~Ls~dkyGSrVIQklLe~ls-~eqr~~LV~EL~~~i~~LvkDq~GNhVIQKlLE~~p~e~~e~Iid~L~g~iveL 851 (1034)
.+++.+|++|+|||||||+++++++ .+++..++++|.+++..|++|++||||||+||++++++.+++|++.+.+++.+|
T Consensus 84 ~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 84 SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp GGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 74899998555552899988986381999999999999989999419762689999999779988999999999989999
Q ss_pred HCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHCC
Q ss_conf 149887647889884159988999999999999998711954129999999608922----3999999999999999219
Q 001671 852 STHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPH----ERSAIIKKLTGQIVQMSQQ 927 (1034)
Q Consensus 852 s~hkyGS~VIQklLe~~~~~~~r~~IIeeIl~~l~~La~DqyGNyVVQ~ILE~g~~k----eR~~Iie~L~g~IvsLS~~ 927 (1034)
+.|++||+|+|+||+++ ++.++..+++++.+++..|+.|+|||||||++|+++.++ .+..|++.+++++.+|+++
T Consensus 164 ~~~~~Gs~Vvq~~l~~~-~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~ 242 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHG-TTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 242 (333)
T ss_dssp HTSTTHHHHHHHHHHHC-CHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 65836179999999829-99999999999999899980598289999999983872002036999999999999999706
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHH---HHHHHHHHHHHHH-HHHH
Q ss_conf 04899999999409999999999999518789535998530885469999997409978---9999999999989-9895
Q 001671 928 KFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQ---QLELILNRIKVHL-NALK 1003 (1034)
Q Consensus 928 KfGS~VVEKlL~~~s~k~Rk~II~eLlg~~~~~e~L~~La~D~fGNyVVQkLLe~~dd~---qRe~IlseLk~hL-~eL~ 1003 (1034)
||||+||++||+.+ ..++.++.+++.... .+.+..|+.|+|||||||++|++++++ .++.|+++|++++ .+|+
T Consensus 243 k~gs~Vvek~l~~~--~~~~~ii~ell~~~~-~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr 319 (333)
T 3bwt_A 243 KFGSNVIEKILKTA--IVSEPMILEILNNGG-ETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIR 319 (333)
T ss_dssp TTHHHHHHHHHTSH--HHHHHHHHHHHHTTH-HHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGG
T ss_pred CHHHHHHHHHHCCC--CHHHHHHHHHHHCCC-CHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHC
T ss_conf 27799999998062--016999999982468-567999871880789999999966686599999999999874556546
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 1788458999999
Q 001671 1004 KYTYGKHIVARVE 1016 (1034)
Q Consensus 1004 ~s~yGk~IV~kle 1016 (1034)
.++||+||+.+++
T Consensus 320 ~~~~G~~i~~~l~ 332 (333)
T 3bwt_A 320 NTPHGKRIIGMLH 332 (333)
T ss_dssp GSHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHC
T ss_conf 8997788999864
No 6
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=1.00 E-value=1 Score=343.95 Aligned_cols=303 Identities=21% Similarity=0.342 Sum_probs=250.7
Q ss_pred CCCHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 74899999641199--9999999999988698520354433034254013899999999999878898966224422999
Q 001671 712 YGSRFIQQKLETAT--TEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVI 789 (1034)
Q Consensus 712 ~GSRvIQklLe~aS--~Eer~~If~EI~p~i~eLmtD~fGShVIQKLLe~gs~eqr~~Lie~Lkg~I~~Ls~dkyGSrVI 789 (1034)
+-|++++......+ ..++...++++.+++.+++.|++|+++||++|++++++++..|++++.+++.+|++|+||+|||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 75254899867998655444603999998999997287230999998662999999999999999899986485115589
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 99875079999999999999789898505677568999996299568999999999969784149887647889884159
Q 001671 790 QKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCH 869 (1034)
Q Consensus 790 QklLe~ls~eqr~~LV~EL~~~i~~LvkDq~GNhVIQKlLE~~p~e~~e~Iid~L~g~iveLs~hkyGS~VIQklLe~~~ 869 (1034)
||+|++++.+++..|++++.+++..++.|++|++|||++|+++.++.+..|++.+.+++..|+.|++|++|||++|+.+.
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 99997399999999999986208988517554899999997589999999999999999999517445549999997199
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH----
Q ss_conf 9889999999999999987119541299999996089223999999999999999219048999999994099999----
Q 001671 870 DEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAE---- 945 (1034)
Q Consensus 870 ~~~~r~~IIeeIl~~l~~La~DqyGNyVVQ~ILE~g~~keR~~Iie~L~g~IvsLS~~KfGS~VVEKlL~~~s~k~---- 945 (1034)
+..+..|++.+.+++..|+.+++|+.|+|++++++.++++..|++.|.+++..|+++.||++||+++|+.++++.
T Consensus 163 -~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 -IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp -GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf -9999999999999999996787668299999986899999999999999999996597299999999953890322357
Q ss_pred --HHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHCCCCHH
Q ss_conf --9999999951878953599853088546999999740997899999999999-------------8998951788458
Q 001671 946 --RQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-------------HLNALKKYTYGKH 1010 (1034)
Q Consensus 946 --Rk~II~eLlg~~~~~e~L~~La~D~fGNyVVQkLLe~~dd~qRe~IlseLk~-------------hL~eL~~s~yGk~ 1010 (1034)
+..|++.+. +++..|++++||++||+++|+.+++..|+.|+++|.. .+..|..++||.+
T Consensus 242 ~~~~~i~~~l~------~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNy 315 (369)
T 3k49_A 242 DIKQEIIETVA------NNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANY 315 (369)
T ss_dssp HHHHHHHHHHH------TTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf 67999999999------999999861575699999998399999999999985556432112356527999984730589
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999840
Q 001671 1011 IVARVEKLVAA 1021 (1034)
Q Consensus 1011 IV~klekli~~ 1021 (1034)
|+.++......
T Consensus 316 Viq~~l~~~~~ 326 (369)
T 3k49_A 316 VIQKLVNVSEG 326 (369)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHCCH
T ss_conf 99999996788
No 7
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=1.00 E-value=1 Score=343.85 Aligned_cols=301 Identities=24% Similarity=0.376 Sum_probs=279.6
Q ss_pred CHHHHHHHHH---HHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 8344677998---6301734421198889999998408774899999641199999999999998869852035443303
Q 001671 676 DESFASSLLD---EFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752 (1034)
Q Consensus 676 ~~~~~s~LLe---Ef~sneer~~~LseI~GkiveLA~Dq~GSRvIQklLe~aS~Eer~~If~EI~p~i~eLmtD~fGShV 752 (1034)
.+...+.+++ +..+.+++...+.++.++++++++|++|++++|++|++++.+++..|++++.+++.+|+.|+||++|
T Consensus 33 ~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rv 112 (351)
T 3gvo_A 33 QDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRV 112 (351)
T ss_dssp TSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHH
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 69863699999971398999999999998858989718166299999996099999999999987669988607886899
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 42540138999999999998788989662244229999987507999999999999978989850567756899999629
Q 001671 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECV 832 (1034)
Q Consensus 753 IQKLLe~gs~eqr~~Lie~Lkg~I~~Ls~dkyGSrVIQklLe~ls~eqr~~LV~EL~~~i~~LvkDq~GNhVIQKlLE~~ 832 (1034)
||++|++++.+++..|++++.+++..|+.|.+|+||+|+++++++++++..|++.+.+++..++.+++|++|||++|+++
T Consensus 113 vQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~ 192 (351)
T 3gvo_A 113 IQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHC 192 (351)
T ss_dssp HHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 99999967899999999985316999987101327999999768999999999999888999980757489999999978
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 95689999999999697841498876478898841599889999999999999987119541299999996089223999
Q 001671 833 PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSA 912 (1034)
Q Consensus 833 p~e~~e~Iid~L~g~iveLs~hkyGS~VIQklLe~~~~~~~r~~IIeeIl~~l~~La~DqyGNyVVQ~ILE~g~~keR~~ 912 (1034)
+++.+..|++.+.+++..|+.+++|++|||++|+++ ++..+..|++.+.+++..|++++||+.||+++++++.++.|..
T Consensus 193 ~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~-~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ 271 (351)
T 3gvo_A 193 TAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHG-RPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERAL 271 (351)
T ss_dssp CHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHS-CHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 999999999998654996189943879999999967-5344999999999889998549388999999997599999999
Q ss_pred HHHHHHH-------HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 9999999-------9999921904899999999409999999999999518789535998530885469999997409
Q 001671 913 IIKKLTG-------QIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSIEENEPLQVMMKDQFANYVVQKVLETC 983 (1034)
Q Consensus 913 Iie~L~g-------~IvsLS~~KfGS~VVEKlL~~~s~k~Rk~II~eLlg~~~~~e~L~~La~D~fGNyVVQkLLe~~ 983 (1034)
|++.|.. .+..|+.++||++||+++|..+++++|+.|++.+. +++..|.+++||.+|+.++-...
T Consensus 272 ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~------~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 272 LIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIR------PHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp HHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHG------GGHHHHTTSTTTHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999861267887279880699626799999998589999999999999------99999836984699999999987
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=1.00 E-value=1 Score=342.49 Aligned_cols=283 Identities=20% Similarity=0.307 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999998869852035443303425401389999999999987889896622442299999875079999999999999
Q 001671 730 NMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELD 809 (1034)
Q Consensus 730 ~~If~EI~p~i~eLmtD~fGShVIQKLLe~gs~eqr~~Lie~Lkg~I~~Ls~dkyGSrVIQklLe~ls~eqr~~LV~EL~ 809 (1034)
+.+++++.+++.+|+.|++|+++||++|++++++++..|++++.+++.+|++|+||++|+|++|++++.+++..|++++.
T Consensus 5 ~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~ 84 (333)
T 3bwt_A 5 DAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISS 84 (333)
T ss_dssp TCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 48699999799999658471399999876299999999999999889999558532799999996299999999999987
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7898985056775689999962995-689999999999697841498876478898841599889999999999999987
Q 001671 810 GHIMRCVRDQNGNHVIQKCIECVPE-DAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCML 888 (1034)
Q Consensus 810 ~~i~~LvkDq~GNhVIQKlLE~~p~-e~~e~Iid~L~g~iveLs~hkyGS~VIQklLe~~~~~~~r~~IIeeIl~~l~~L 888 (1034)
+++..++.|++|++|||++|++++. +.++.|++.+.+++..|+.+++|++|+|+||+.. .+..++.+++.+.+.+..|
T Consensus 85 ~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~-~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 85 PHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRL-KPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp GGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHS-CHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC-CHHHHHHHHHHHHHHHHHH
T ss_conf 489999855555289998898638199999999999998999941976268999999977-9988999999999989999
Q ss_pred HCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHH----HHHHHHHHHCCCCCCHHHH
Q ss_conf 119541299999996089223999999999999999219048999999994099999----9999999951878953599
Q 001671 889 AQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTPAE----RQALVNEMLGSIEENEPLQ 964 (1034)
Q Consensus 889 a~DqyGNyVVQ~ILE~g~~keR~~Iie~L~g~IvsLS~~KfGS~VVEKlL~~~s~k~----Rk~II~eLlg~~~~~e~L~ 964 (1034)
+.+++|+.|+|++++++.++++..|++.|.+++..|+++.||++||+++|+.++++. ++.|++.+. +++.
T Consensus 164 ~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~------~~~~ 237 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLK------PRAI 237 (333)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHG------GGHH
T ss_pred HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH------HHHH
T ss_conf 6583617999999982999999999999999899980598289999999983872002036999999999------9999
Q ss_pred HHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 85308854699999974099789999999999-----9899895178845899999999840
Q 001671 965 VMMKDQFANYVVQKVLETCDDQQLELILNRIK-----VHLNALKKYTYGKHIVARVEKLVAA 1021 (1034)
Q Consensus 965 ~La~D~fGNyVVQkLLe~~dd~qRe~IlseLk-----~hL~eL~~s~yGk~IV~klekli~~ 1021 (1034)
.|+.++||++||+++|+..+ .++.++.++. +++..|..++||.+|+.++......
T Consensus 238 ~Ls~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~ 297 (333)
T 3bwt_A 238 ELSIHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHK 297 (333)
T ss_dssp HHHTSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHCCCC--HHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 99706277999999980620--1699999998246856799987188078999999996668
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=314.94 Aligned_cols=282 Identities=18% Similarity=0.307 Sum_probs=216.4
Q ss_pred HHHH--HHHHHHHHCCCCCCCHHHHHCCCCCHH-HHHHHHHHHH---HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9999--886985203544330342540138999-9999999987---889896622442299999875079999999999
Q 001671 733 FQEI--MPQALSLMTDVFGNYVIQKFFEHGTAS-QVRELADQLT---GHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVK 806 (1034)
Q Consensus 733 f~EI--~p~i~eLmtD~fGShVIQKLLe~gs~e-qr~~Lie~Lk---g~I~~Ls~dkyGSrVIQklLe~ls~eqr~~LV~ 806 (1034)
+.++ .+++.++|.|++|+++||+.|+.++++ .+..|++++. +++.+|++|+||++||||+|++++.+++..++.
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~ 92 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLR 92 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHCCCEEHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99884088770030487102999987043886899999999998627789999628288799999998599999999999
Q ss_pred H-HHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH--
Q ss_conf 9-997898985056775689999962995689999999999-697841498876478898841599889999999999--
Q 001671 807 E-LDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYD-QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEIL-- 882 (1034)
Q Consensus 807 E-L~~~i~~LvkDq~GNhVIQKlLE~~p~e~~e~Iid~L~g-~iveLs~hkyGS~VIQklLe~~~~~~~r~~IIeeIl-- 882 (1034)
+ +.+++..++.|++|++|+||+|++++.+....|+..+.+ ++..++.|++|++|||+||+.+. +..++.|++++.
T Consensus 93 ~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~-~~~~~~Ii~~~~~~ 171 (382)
T 3v71_A 93 QMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLP-VDMWTFFVHFLSSG 171 (382)
T ss_dssp HHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSC-TTTSHHHHHHHHST
T ss_pred HHHCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHCC-HHHHHHHHHHHHCC
T ss_conf 97311398877375056999999997899999999998541266999618561519999999789-99999999999545
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCHHH-------H----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH--HHHHHH
Q ss_conf 999987119541299999996089223-------9----999999999999992190489999999940999--999999
Q 001671 883 QSVCMLAQDQYGNYVVQHVLEHGKPHE-------R----SAIIKKLTGQIVQMSQQKFASNVIEKCLSFGTP--AERQAL 949 (1034)
Q Consensus 883 ~~l~~La~DqyGNyVVQ~ILE~g~~ke-------R----~~Iie~L~g~IvsLS~~KfGS~VVEKlL~~~s~--k~Rk~I 949 (1034)
+++..|++|+||++|||++|+++.++. | ..|++.+.+++..|++++||++||++||+.+++ +.|..|
T Consensus 172 ~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~i 251 (382)
T 3v71_A 172 DSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTI 251 (382)
T ss_dssp THHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHH
T ss_pred CCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 31176826951159999999968876421145578999999999999989998647520199999984499747889999
Q ss_pred HHH-HHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-----------HHHHHHHCCCCHHHHHHHHH
Q ss_conf 999-951878953599853088546999999740997899999999999-----------89989517884589999999
Q 001671 950 VNE-MLGSIEENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKV-----------HLNALKKYTYGKHIVARVEK 1017 (1034)
Q Consensus 950 I~e-Llg~~~~~e~L~~La~D~fGNyVVQkLLe~~dd~qRe~IlseLk~-----------hL~eL~~s~yGk~IV~klek 1017 (1034)
+.+ +. +++..|++++||++||+++|+.+++.+|+.|+++|.. .+..|..++||.+|+.++..
T Consensus 252 i~~~l~------~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~ 325 (382)
T 3v71_A 252 IDKCLL------RNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMIS 325 (382)
T ss_dssp HHHTTT------TCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999------98999965706759999999869999999999999821345555652589998779971399999999
Q ss_pred HHHC
Q ss_conf 9840
Q 001671 1018 LVAA 1021 (1034)
Q Consensus 1018 li~~ 1021 (1034)
..+.
T Consensus 326 ~~~~ 329 (382)
T 3v71_A 326 ICTA 329 (382)
T ss_dssp HHHH
T ss_pred HCCC
T ss_conf 7434
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=1.00 E-value=1 Score=307.30 Aligned_cols=209 Identities=21% Similarity=0.325 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 119888999999840877489999964119999999999999--886985203544330342540138999999999998
Q 001671 695 FELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEI--MPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQL 772 (1034)
Q Consensus 695 ~~LseI~GkiveLA~Dq~GSRvIQklLe~aS~Eer~~If~EI--~p~i~eLmtD~fGShVIQKLLe~gs~eqr~~Lie~L 772 (1034)
.+++.+.|++++++.|++|||++|++|++++.+++..|+.++ .+++..|++|++|||||||+|++++++.+..|++.+
T Consensus 105 ~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~ 184 (412)
T 3k62_A 105 KLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFV 184 (412)
T ss_dssp HHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999998174524999999995788899999999704601899971964369999999969999999999987
Q ss_pred H--HHHHHHHHCCCCCHHHHHHHHHCCH------------HHHH----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 7--8898966224422999998750799------------9999----99999997898985056775689999962995
Q 001671 773 T--GHVLTLSLQMYGCRVIQKAIEVVEL------------DQQT----QMVKELDGHIMRCVRDQNGNHVIQKCIECVPE 834 (1034)
Q Consensus 773 k--g~I~~Ls~dkyGSrVIQklLe~ls~------------eqr~----~LV~EL~~~i~~LvkDq~GNhVIQKlLE~~p~ 834 (1034)
. +++.+|++|+|||||||++|+.+.. +++. .++.++..++..|+.|+|||||||.+|+++.+
T Consensus 185 ~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~ 264 (412)
T 3k62_A 185 ATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDL 264 (412)
T ss_dssp HSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGG
T ss_pred HCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 14136999855963599999999966741122001000388999999999999999999986484202999999962990
Q ss_pred H-HHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH-----------HHHHHHCCCCHHHHHHHH
Q ss_conf 6-8999999-99996978414988764788988415998899999999999-----------999871195412999999
Q 001671 835 D-AIQFIVL-TFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ-----------SVCMLAQDQYGNYVVQHV 901 (1034)
Q Consensus 835 e-~~e~Iid-~L~g~iveLs~hkyGS~VIQklLe~~~~~~~r~~IIeeIl~-----------~l~~La~DqyGNyVVQ~I 901 (1034)
+ .+..|+. .+.+++++|++|||||+|||+||+++ ++..+..|+++|+. .+..|++|+|||||||++
T Consensus 265 ~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~-~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~ 343 (412)
T 3k62_A 265 AVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHA-PLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCM 343 (412)
T ss_dssp HHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHC-CHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHH
T ss_conf 557999999999988999960407689999999859-9999999999998503577654516999986699368999999
Q ss_pred HHH
Q ss_conf 960
Q 001671 902 LEH 904 (1034)
Q Consensus 902 LE~ 904 (1034)
|+.
T Consensus 344 L~~ 346 (412)
T 3k62_A 344 LTI 346 (412)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 997
Done!