Query 001672
Match_columns 1033
No_of_seqs 311 out of 693
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2036 Predicted P-loop ATPas 100.0 7E-321 0E+00 2678.8 78.5 1007 1-1031 1-1010(1011)
2 COG1444 Predicted P-loop ATPas 100.0 1E-174 3E-179 1539.5 58.7 750 20-913 2-756 (758)
3 PF13718 GNAT_acetyltr_2: GNAT 100.0 8.5E-70 1.8E-74 563.4 16.8 196 518-747 1-196 (196)
4 PF05127 Helicase_RecD: Helica 100.0 1.9E-59 4.2E-64 480.7 4.4 175 280-478 1-177 (177)
5 PF08351 DUF1726: Domain of un 99.9 3.2E-25 6.9E-30 206.1 6.5 92 106-200 1-92 (92)
6 PF13725 tRNA_bind_2: Possible 99.7 1.1E-17 2.4E-22 157.3 5.9 99 769-893 1-99 (101)
7 PHA03333 putative ATPase subun 99.5 4.2E-13 9.1E-18 160.0 15.4 137 276-432 187-346 (752)
8 PF13604 AAA_30: AAA domain; P 98.6 6.6E-07 1.4E-11 94.3 12.9 156 255-462 2-162 (196)
9 TIGR01447 recD exodeoxyribonuc 98.4 3.5E-06 7.6E-11 102.4 16.4 201 257-473 148-365 (586)
10 PRK10875 recD exonuclease V su 98.4 7.7E-07 1.7E-11 108.4 10.0 202 256-474 154-377 (615)
11 PF13673 Acetyltransf_10: Acet 98.3 6.4E-06 1.4E-10 77.4 12.7 88 530-722 30-117 (117)
12 TIGR01448 recD_rel helicase, p 98.3 1.2E-05 2.7E-10 99.9 16.8 171 253-474 322-497 (720)
13 PF13508 Acetyltransf_7: Acety 98.3 4.5E-06 9.7E-11 74.4 8.9 30 613-642 26-55 (79)
14 TIGR01575 rimI ribosomal-prote 98.1 8.8E-05 1.9E-09 70.3 13.7 77 614-742 55-131 (131)
15 smart00487 DEXDc DEAD-like hel 98.0 5.4E-05 1.2E-09 75.8 11.1 147 255-415 9-173 (201)
16 PRK13889 conjugal transfer rel 98.0 9E-05 2E-09 94.5 15.5 153 253-463 345-502 (988)
17 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00011 2.4E-09 91.9 14.2 153 253-463 351-508 (744)
18 PRK13826 Dtr system oriT relax 97.9 0.00015 3.2E-09 93.2 15.3 153 253-463 380-537 (1102)
19 PTZ00330 acetyltransferase; Pr 97.8 0.00018 4E-09 70.4 11.6 31 613-643 82-112 (147)
20 PHA03368 DNA packaging termina 97.8 0.00022 4.8E-09 86.6 13.8 129 276-415 254-393 (738)
21 COG0456 RimI Acetyltransferase 97.7 3E-05 6.5E-10 78.2 4.6 82 613-747 91-174 (177)
22 PF00583 Acetyltransf_1: Acety 97.7 9.8E-05 2.1E-09 65.2 6.8 33 611-643 23-55 (83)
23 PRK10146 aminoalkylphosphonic 97.7 6E-05 1.3E-09 73.6 5.4 30 614-643 77-106 (144)
24 PRK10314 putative acyltransfer 97.7 5.2E-05 1.1E-09 76.9 5.1 31 613-643 74-104 (153)
25 TIGR00376 DNA helicase, putati 97.6 0.0014 3E-08 81.0 18.0 67 254-327 157-223 (637)
26 PRK09491 rimI ribosomal-protei 97.6 0.00036 7.7E-09 68.9 9.9 29 615-643 65-93 (146)
27 TIGR02760 TraI_TIGR conjugativ 97.6 0.00046 1E-08 94.0 13.3 151 252-429 427-583 (1960)
28 PRK03624 putative acetyltransf 97.5 0.0014 3E-08 62.8 12.4 29 615-643 70-98 (140)
29 TIGR03103 trio_acet_GNAT GNAT- 97.5 0.0014 3E-08 79.6 15.3 140 515-745 93-234 (547)
30 PHA02533 17 large terminase pr 97.4 0.0023 4.9E-08 77.5 15.9 144 256-417 61-214 (534)
31 TIGR03827 GNAT_ablB putative b 97.4 0.0025 5.3E-08 70.3 14.9 81 613-745 183-265 (266)
32 PRK13688 hypothetical protein; 97.4 0.00026 5.7E-09 72.5 6.7 27 612-638 78-104 (156)
33 TIGR01890 N-Ac-Glu-synth amino 97.4 0.001 2.2E-08 78.3 11.5 30 614-643 348-377 (429)
34 TIGR01970 DEAH_box_HrpB ATP-de 97.4 0.0012 2.6E-08 83.5 12.6 132 264-414 8-158 (819)
35 COG1643 HrpA HrpA-like helicas 97.3 0.0013 2.8E-08 82.9 11.8 136 265-431 57-215 (845)
36 PRK11664 ATP-dependent RNA hel 97.3 0.0018 3.8E-08 82.0 12.9 132 264-414 11-161 (812)
37 TIGR02760 TraI_TIGR conjugativ 97.3 0.0029 6.4E-08 86.5 15.4 159 253-466 1018-1185(1960)
38 PHA00673 acetyltransferase dom 97.2 0.0045 9.8E-08 63.6 13.1 93 512-643 13-115 (154)
39 PRK14712 conjugal transfer nic 97.2 0.0044 9.5E-08 82.4 15.7 156 254-461 835-999 (1623)
40 PRK10562 putative acetyltransf 97.2 0.00077 1.7E-08 66.7 6.7 68 616-742 71-138 (145)
41 PF05970 PIF1: PIF1-like helic 97.2 0.0013 2.7E-08 76.0 9.3 121 255-400 2-122 (364)
42 PRK08939 primosomal protein Dn 97.1 0.0022 4.8E-08 72.5 9.8 50 265-314 145-194 (306)
43 PRK10917 ATP-dependent DNA hel 97.1 0.0069 1.5E-07 75.5 14.9 147 254-412 261-419 (681)
44 PF13527 Acetyltransf_9: Acety 97.1 0.00092 2E-08 64.1 5.7 33 611-643 70-102 (127)
45 PRK13709 conjugal transfer nic 97.1 0.0064 1.4E-07 81.8 15.2 157 254-462 967-1132(1747)
46 TIGR02382 wecD_rffC TDP-D-fuco 97.0 0.0013 2.8E-08 68.7 7.0 30 614-643 124-153 (191)
47 PLN02706 glucosamine 6-phospha 97.0 0.0011 2.4E-08 65.6 6.1 30 614-643 86-115 (150)
48 KOG1803 DNA helicase [Replicat 97.0 0.0012 2.5E-08 79.2 7.2 64 253-323 184-247 (649)
49 TIGR01547 phage_term_2 phage t 97.0 0.0032 6.9E-08 73.1 10.7 115 277-402 2-123 (396)
50 cd02169 Citrate_lyase_ligase C 97.0 0.00089 1.9E-08 75.4 5.8 29 615-643 27-55 (297)
51 TIGR00643 recG ATP-dependent D 97.0 0.009 2E-07 73.8 14.7 146 254-412 235-396 (630)
52 PRK10514 putative acetyltransf 96.9 0.0016 3.4E-08 63.9 6.2 25 616-640 72-96 (145)
53 PRK05279 N-acetylglutamate syn 96.9 0.0015 3.1E-08 77.2 6.8 30 614-643 360-389 (441)
54 PRK07757 acetyltransferase; Pr 96.9 0.0016 3.4E-08 64.7 5.9 30 614-643 66-95 (152)
55 TIGR01686 FkbH FkbH-like domai 96.9 0.013 2.8E-07 66.5 13.7 31 613-643 257-287 (320)
56 TIGR01967 DEAH_box_HrpA ATP-de 96.8 0.0054 1.2E-07 80.4 11.6 133 264-414 73-223 (1283)
57 PRK10140 putative acetyltransf 96.8 0.0033 7E-08 62.4 7.6 69 618-738 83-152 (162)
58 TIGR02406 ectoine_EctA L-2,4-d 96.8 0.0029 6.4E-08 64.2 7.3 31 613-643 66-96 (157)
59 PRK10975 TDP-fucosamine acetyl 96.8 0.0043 9.4E-08 64.7 8.5 30 614-643 127-156 (194)
60 PRK07922 N-acetylglutamate syn 96.8 0.0026 5.7E-08 65.5 6.6 30 614-643 71-100 (169)
61 PF00270 DEAD: DEAD/DEAH box h 96.8 0.0034 7.3E-08 62.8 7.2 69 256-331 1-70 (169)
62 PF08445 FR47: FR47-like prote 96.7 0.0051 1.1E-07 56.8 7.5 28 614-641 22-49 (86)
63 PRK07952 DNA replication prote 96.7 0.0082 1.8E-07 66.0 10.3 133 256-432 78-223 (244)
64 PHA02653 RNA helicase NPH-II; 96.7 0.0081 1.8E-07 74.6 11.3 59 265-326 171-243 (675)
65 cd00046 DEXDc DEAD-like helica 96.7 0.0029 6.4E-08 59.4 5.9 124 278-411 2-143 (144)
66 PRK12308 bifunctional arginino 96.7 0.0079 1.7E-07 74.2 11.0 30 614-643 528-557 (614)
67 PF04851 ResIII: Type III rest 96.7 0.009 2E-07 60.1 9.5 66 256-325 5-70 (184)
68 PRK09831 putative acyltransfer 96.6 0.0031 6.6E-08 62.8 5.4 26 616-641 75-100 (147)
69 COG4098 comFA Superfamily II D 96.6 0.01 2.3E-07 67.3 9.9 137 253-411 96-242 (441)
70 PRK11131 ATP-dependent RNA hel 96.6 0.014 2.9E-07 76.7 12.4 136 257-413 75-229 (1294)
71 PLN02825 amino-acid N-acetyltr 96.5 0.0046 9.9E-08 74.5 7.2 31 613-643 432-462 (515)
72 TIGR00580 mfd transcription-re 96.5 0.039 8.5E-07 71.0 15.3 147 254-412 451-609 (926)
73 PHA02558 uvsW UvsW helicase; P 96.4 0.023 4.9E-07 68.5 12.4 141 254-412 114-259 (501)
74 PF09848 DUF2075: Uncharacteri 96.4 0.023 5E-07 65.2 11.8 167 276-482 1-186 (352)
75 PRK08084 DNA replication initi 96.4 0.034 7.3E-07 60.5 12.2 44 270-313 39-82 (235)
76 KOG0922 DEAH-box RNA helicase 96.3 0.016 3.5E-07 70.4 10.3 134 276-432 66-216 (674)
77 PRK15130 spermidine N1-acetylt 96.3 0.015 3.3E-07 59.8 8.8 80 617-748 86-166 (186)
78 KOG1805 DNA replication helica 96.3 0.011 2.3E-07 74.2 8.4 173 251-436 666-860 (1100)
79 PF03354 Terminase_1: Phage Te 96.3 0.052 1.1E-06 65.0 14.1 135 278-421 24-170 (477)
80 PRK04296 thymidine kinase; Pro 96.2 0.025 5.5E-07 59.5 10.1 53 379-431 77-134 (190)
81 cd04301 NAT_SF N-Acyltransfera 96.2 0.012 2.7E-07 47.3 6.0 34 611-644 23-56 (65)
82 TIGR03448 mycothiol_MshD mycot 96.2 0.011 2.3E-07 65.3 7.2 29 615-643 228-256 (292)
83 PF13086 AAA_11: AAA domain; P 96.2 0.013 2.7E-07 61.3 7.4 65 256-327 3-75 (236)
84 PRK12377 putative replication 96.2 0.028 6.1E-07 62.0 10.4 113 277-432 102-224 (248)
85 PF03237 Terminase_6: Terminas 96.2 0.039 8.5E-07 61.5 11.6 110 280-401 1-118 (384)
86 PRK11192 ATP-dependent RNA hel 96.1 0.06 1.3E-06 63.2 13.6 66 255-327 24-95 (434)
87 TIGR03448 mycothiol_MshD mycot 96.1 0.012 2.5E-07 65.0 7.0 27 615-641 72-98 (292)
88 PRK10689 transcription-repair 96.1 0.065 1.4E-06 70.5 14.6 151 254-412 600-758 (1147)
89 PRK10590 ATP-dependent RNA hel 96.1 0.077 1.7E-06 63.0 14.1 143 255-413 24-191 (456)
90 PRK11634 ATP-dependent RNA hel 96.0 0.033 7.2E-07 68.9 11.2 64 255-325 29-94 (629)
91 PRK10536 hypothetical protein; 96.0 0.05 1.1E-06 60.4 11.2 131 255-411 60-211 (262)
92 PRK05580 primosome assembly pr 95.8 0.13 2.8E-06 64.4 14.8 71 254-329 144-214 (679)
93 PF13523 Acetyltransf_8: Acety 95.7 0.11 2.3E-06 51.7 11.3 65 540-643 44-108 (152)
94 PRK11776 ATP-dependent RNA hel 95.7 0.066 1.4E-06 63.5 11.5 64 255-325 27-92 (460)
95 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.049 1.1E-06 57.7 9.5 43 273-315 35-77 (226)
96 PRK08181 transposase; Validate 95.7 0.058 1.3E-06 60.2 10.3 55 256-313 89-143 (269)
97 COG1484 DnaC DNA replication p 95.6 0.059 1.3E-06 59.6 10.1 129 260-434 92-234 (254)
98 PF00580 UvrD-helicase: UvrD/R 95.6 0.032 7E-07 61.2 8.0 67 256-331 2-71 (315)
99 PRK01172 ski2-like helicase; P 95.5 0.14 2.9E-06 64.0 13.7 138 255-413 23-180 (674)
100 COG1246 ArgA N-acetylglutamate 95.4 0.02 4.4E-07 58.6 5.1 30 614-643 66-95 (153)
101 PTZ00424 helicase 45; Provisio 95.4 0.16 3.5E-06 58.6 13.1 67 255-328 51-119 (401)
102 PF13245 AAA_19: Part of AAA d 95.3 0.058 1.3E-06 49.0 7.0 50 276-325 10-62 (76)
103 cd00009 AAA The AAA+ (ATPases 95.2 0.16 3.4E-06 48.2 10.3 55 259-314 3-57 (151)
104 TIGR00124 cit_ly_ligase [citra 95.2 0.075 1.6E-06 61.1 9.4 28 616-643 53-80 (332)
105 PRK01346 hypothetical protein; 95.2 0.026 5.6E-07 65.8 5.9 33 611-643 77-109 (411)
106 PF13420 Acetyltransf_4: Acety 95.2 0.092 2E-06 52.0 8.8 73 613-738 76-150 (155)
107 TIGR03585 PseH pseudaminic aci 95.2 0.46 9.9E-06 46.9 13.6 68 619-739 82-150 (156)
108 PRK04837 ATP-dependent RNA hel 95.1 0.17 3.7E-06 59.4 12.3 69 255-330 31-108 (423)
109 PRK08903 DnaA regulatory inact 95.1 0.12 2.5E-06 55.4 10.0 41 275-315 41-81 (227)
110 PRK08116 hypothetical protein; 95.1 0.15 3.3E-06 56.8 11.1 39 276-314 114-152 (268)
111 PRK11448 hsdR type I restricti 95.1 0.088 1.9E-06 69.1 10.6 67 254-323 413-481 (1123)
112 PRK02362 ski2-like helicase; P 95.0 0.19 4.1E-06 63.4 13.1 65 255-326 24-88 (737)
113 PRK10151 ribosomal-protein-L7/ 95.0 0.1 2.2E-06 53.3 8.9 70 617-738 96-166 (179)
114 PRK10809 ribosomal-protein-S5- 95.0 0.1 2.2E-06 54.1 8.8 76 616-743 106-184 (194)
115 PRK00254 ski2-like helicase; P 94.9 0.1 2.2E-06 65.6 10.1 140 256-414 25-181 (720)
116 PF04545 Sigma70_r4: Sigma-70, 94.9 0.087 1.9E-06 43.6 6.4 45 861-905 4-48 (50)
117 PRK01297 ATP-dependent RNA hel 94.8 0.093 2E-06 62.6 9.0 143 255-412 110-280 (475)
118 PRK06921 hypothetical protein; 94.7 0.15 3.3E-06 56.7 9.7 38 276-313 117-155 (266)
119 PRK09401 reverse gyrase; Revie 94.7 0.29 6.4E-06 64.7 13.8 68 254-329 80-147 (1176)
120 PRK04537 ATP-dependent RNA hel 94.5 0.063 1.4E-06 65.8 6.7 71 255-332 32-111 (572)
121 PTZ00110 helicase; Provisional 94.5 0.11 2.4E-06 63.4 8.6 142 255-412 153-318 (545)
122 PRK05642 DNA replication initi 94.4 0.24 5.3E-06 53.8 10.4 37 277-313 46-82 (234)
123 PF02562 PhoH: PhoH-like prote 94.4 0.27 5.8E-06 53.0 10.4 132 255-402 5-141 (205)
124 PLN00206 DEAD-box ATP-dependen 94.3 0.32 6.9E-06 59.0 11.9 143 255-413 144-311 (518)
125 PRK08727 hypothetical protein; 94.2 0.21 4.6E-06 54.2 9.4 38 275-312 40-77 (233)
126 PF01695 IstB_IS21: IstB-like 94.2 0.096 2.1E-06 54.8 6.4 38 276-313 47-84 (178)
127 PF08281 Sigma70_r4_2: Sigma-7 94.2 0.13 2.9E-06 42.9 6.0 45 861-905 10-54 (54)
128 smart00382 AAA ATPases associa 94.1 0.31 6.8E-06 45.5 9.2 44 276-320 2-45 (148)
129 PRK14974 cell division protein 94.1 0.42 9.1E-06 55.1 11.8 49 276-325 140-191 (336)
130 PRK11057 ATP-dependent DNA hel 94.1 0.21 4.5E-06 61.8 10.0 117 256-393 27-152 (607)
131 TIGR01054 rgy reverse gyrase. 94.1 0.11 2.4E-06 68.6 8.0 69 255-331 79-147 (1171)
132 TIGR01389 recQ ATP-dependent D 94.0 0.25 5.4E-06 60.7 10.4 117 256-393 15-140 (591)
133 KOG3396 Glucosamine-phosphate 93.9 0.17 3.7E-06 51.0 7.1 62 543-641 52-113 (150)
134 KOG0924 mRNA splicing factor A 93.8 0.28 6.1E-06 60.1 9.8 299 276-638 371-724 (1042)
135 PF13173 AAA_14: AAA domain 93.8 0.31 6.8E-06 47.7 8.8 42 276-318 2-43 (128)
136 PHA02544 44 clamp loader, smal 93.7 0.48 1E-05 53.1 11.3 53 259-314 26-78 (316)
137 KOG3139 N-acetyltransferase [G 93.6 0.11 2.4E-06 53.6 5.3 34 613-646 84-117 (165)
138 COG4626 Phage terminase-like p 93.6 1 2.2E-05 54.7 14.0 151 258-419 65-230 (546)
139 COG2153 ElaA Predicted acyltra 93.5 0.13 2.9E-06 52.3 5.7 30 614-643 77-106 (155)
140 cd00268 DEADc DEAD-box helicas 93.5 0.24 5.3E-06 51.5 7.9 64 256-326 23-90 (203)
141 TIGR02688 conserved hypothetic 93.4 0.28 6.1E-06 58.1 9.0 72 276-401 209-281 (449)
142 TIGR03817 DECH_helic helicase/ 93.4 0.83 1.8E-05 57.9 13.7 65 255-326 37-102 (742)
143 PF10236 DAP3: Mitochondrial r 93.4 0.18 3.8E-06 57.4 7.1 41 276-318 23-63 (309)
144 PRK06526 transposase; Provisio 93.4 0.21 4.7E-06 55.2 7.6 38 276-313 98-135 (254)
145 KOG3138 Predicted N-acetyltran 93.3 0.11 2.4E-06 55.1 5.0 75 614-739 90-164 (187)
146 TIGR01587 cas3_core CRISPR-ass 93.2 0.23 5E-06 56.6 7.9 52 279-330 2-54 (358)
147 PRK06835 DNA replication prote 93.2 0.17 3.6E-06 58.2 6.6 47 266-314 175-221 (329)
148 PHA03372 DNA packaging termina 93.2 0.46 1E-05 58.2 10.5 129 277-416 203-341 (668)
149 PF13302 Acetyltransf_3: Acety 93.0 0.29 6.3E-06 47.3 7.1 29 614-643 85-113 (142)
150 PRK14961 DNA polymerase III su 93.0 1.2 2.6E-05 51.6 13.4 38 258-295 20-57 (363)
151 PRK09183 transposase/IS protei 92.7 0.47 1E-05 52.6 9.1 38 276-313 102-139 (259)
152 PRK00080 ruvB Holliday junctio 92.7 0.79 1.7E-05 52.2 11.2 38 276-316 51-88 (328)
153 TIGR02397 dnaX_nterm DNA polym 92.7 2.1 4.5E-05 48.7 14.5 43 258-301 18-60 (355)
154 TIGR00635 ruvB Holliday juncti 92.6 0.7 1.5E-05 51.6 10.5 18 277-294 31-48 (305)
155 PRK14958 DNA polymerase III su 92.6 0.79 1.7E-05 55.7 11.4 39 258-296 20-58 (509)
156 COG3153 Predicted acetyltransf 92.5 0.083 1.8E-06 55.3 2.7 77 614-748 76-152 (171)
157 TIGR03015 pepcterm_ATPase puta 92.3 0.99 2.1E-05 49.2 10.9 42 256-299 25-66 (269)
158 TIGR02880 cbbX_cfxQ probable R 92.3 0.95 2.1E-05 50.8 11.0 29 277-305 59-87 (284)
159 TIGR00614 recQ_fam ATP-depende 92.2 1.3 2.9E-05 52.9 12.7 117 256-393 13-140 (470)
160 PF04466 Terminase_3: Phage te 92.2 0.041 8.9E-07 64.3 0.0 115 276-402 2-120 (387)
161 PRK13767 ATP-dependent helicas 92.2 1 2.2E-05 58.3 12.3 64 255-325 33-104 (876)
162 PHA01807 hypothetical protein 92.2 0.25 5.3E-06 50.8 5.6 30 615-644 83-112 (153)
163 TIGR03158 cas3_cyano CRISPR-as 92.2 0.7 1.5E-05 53.4 10.0 62 259-329 2-63 (357)
164 KOG0920 ATP-dependent RNA heli 92.1 0.77 1.7E-05 58.9 10.9 142 258-414 176-331 (924)
165 COG0454 WecD Histone acetyltra 92.1 0.16 3.4E-06 43.7 3.5 26 619-644 87-112 (156)
166 PRK14964 DNA polymerase III su 92.1 1.1 2.4E-05 54.3 11.7 43 258-301 17-59 (491)
167 PRK14701 reverse gyrase; Provi 92.1 1.2 2.5E-05 61.0 13.1 65 255-327 80-144 (1638)
168 PRK06893 DNA replication initi 92.1 1.6 3.5E-05 47.3 12.0 35 278-312 41-75 (229)
169 COG3393 Predicted acetyltransf 92.0 0.21 4.5E-06 55.4 5.0 75 560-640 146-228 (268)
170 PRK08691 DNA polymerase III su 91.8 1.3 2.9E-05 55.5 12.3 38 258-295 20-57 (709)
171 PRK14956 DNA polymerase III su 91.8 0.91 2E-05 54.8 10.5 40 258-297 22-61 (484)
172 COG1247 Sortase and related ac 91.8 0.89 1.9E-05 47.7 9.2 91 606-748 74-166 (169)
173 PRK14952 DNA polymerase III su 91.7 1.6 3.5E-05 54.0 12.8 43 258-301 17-59 (584)
174 PRK12323 DNA polymerase III su 91.7 1.9 4.1E-05 53.8 13.3 39 258-296 20-58 (700)
175 cd06171 Sigma70_r4 Sigma70, re 91.7 0.49 1.1E-05 37.8 5.8 45 861-905 10-54 (55)
176 PRK12402 replication factor C 91.7 1.5 3.3E-05 49.3 11.8 41 259-300 20-60 (337)
177 PRK00771 signal recognition pa 91.6 0.89 1.9E-05 54.3 10.1 39 276-314 95-133 (437)
178 PRK14957 DNA polymerase III su 91.4 1.8 3.8E-05 53.2 12.6 42 258-299 20-61 (546)
179 PF05673 DUF815: Protein of un 91.3 0.64 1.4E-05 51.4 7.9 70 256-325 32-101 (249)
180 PRK12422 chromosomal replicati 91.3 0.93 2E-05 54.2 9.9 39 276-314 141-179 (445)
181 PRK07764 DNA polymerase III su 91.2 2.5 5.4E-05 54.3 14.2 38 259-296 20-57 (824)
182 TIGR01211 ELP3 histone acetylt 91.2 0.27 5.8E-06 59.8 5.3 22 621-642 465-486 (522)
183 PRK14087 dnaA chromosomal repl 91.2 1.2 2.7E-05 53.2 10.8 38 276-314 141-181 (450)
184 PRK10865 protein disaggregatio 91.1 0.76 1.6E-05 59.2 9.5 44 258-303 182-225 (857)
185 PRK13342 recombination factor 91.0 1 2.2E-05 53.1 9.9 29 266-295 27-55 (413)
186 PRK14960 DNA polymerase III su 90.9 1.7 3.6E-05 54.4 11.7 37 258-294 19-55 (702)
187 PRK14722 flhF flagellar biosyn 90.7 1 2.2E-05 52.8 9.2 40 276-315 137-178 (374)
188 PRK06645 DNA polymerase III su 90.7 2.5 5.5E-05 51.4 12.9 40 258-297 25-64 (507)
189 PRK00440 rfc replication facto 90.6 1.8 3.9E-05 48.2 10.9 45 259-304 22-66 (319)
190 TIGR02959 SigZ RNA polymerase 90.6 0.62 1.3E-05 47.8 6.7 55 861-915 100-154 (170)
191 PRK14712 conjugal transfer nic 90.3 2.1 4.4E-05 58.3 12.6 129 253-423 280-415 (1623)
192 PRK13766 Hef nuclease; Provisi 90.3 1.8 3.8E-05 55.0 11.7 52 278-329 31-82 (773)
193 PRK14951 DNA polymerase III su 90.3 0.33 7.3E-06 60.1 5.1 39 258-296 20-58 (618)
194 PRK14971 DNA polymerase III su 90.1 3.9 8.4E-05 51.0 14.0 43 258-301 21-63 (614)
195 PRK14949 DNA polymerase III su 90.0 1.9 4.2E-05 55.4 11.4 39 258-296 20-58 (944)
196 PRK14970 DNA polymerase III su 90.0 2.6 5.6E-05 48.7 11.8 39 258-296 21-59 (367)
197 PRK14963 DNA polymerase III su 89.9 2.8 6.2E-05 51.0 12.5 43 258-301 18-60 (504)
198 PRK09652 RNA polymerase sigma 89.8 0.88 1.9E-05 46.1 7.0 53 860-912 127-179 (182)
199 COG0513 SrmB Superfamily II DN 89.8 0.43 9.4E-06 57.9 5.6 69 255-330 52-124 (513)
200 cd01124 KaiC KaiC is a circadi 89.8 2.3 5E-05 43.5 10.1 40 279-318 2-42 (187)
201 PRK12529 RNA polymerase sigma 89.7 0.73 1.6E-05 47.7 6.4 50 860-909 126-175 (178)
202 TIGR02640 gas_vesic_GvpN gas v 89.6 3.7 8E-05 45.5 12.2 52 256-313 4-55 (262)
203 PRK04195 replication factor C 89.6 4.2 9E-05 49.1 13.6 60 258-320 21-80 (482)
204 PRK00118 putative DNA-binding 89.6 1.2 2.7E-05 43.2 7.4 53 860-912 16-68 (104)
205 PRK09111 DNA polymerase III su 89.6 2.4 5.1E-05 52.7 11.6 41 258-298 28-68 (598)
206 PRK09047 RNA polymerase factor 89.5 1.1 2.3E-05 45.0 7.2 52 860-911 105-156 (161)
207 PRK14969 DNA polymerase III su 89.5 3.3 7.1E-05 50.7 12.7 39 258-296 20-58 (527)
208 COG1200 RecG RecG-like helicas 89.5 2.2 4.8E-05 53.0 11.1 161 254-431 262-435 (677)
209 PRK07994 DNA polymerase III su 89.5 2.7 5.8E-05 52.6 12.0 40 258-297 20-59 (647)
210 COG1061 SSL2 DNA or RNA helica 89.3 2.9 6.3E-05 49.9 11.8 145 256-419 38-189 (442)
211 PLN03137 ATP-dependent DNA hel 89.2 1.4 3E-05 57.8 9.5 120 255-393 461-594 (1195)
212 PF13191 AAA_16: AAA ATPase do 89.1 0.76 1.6E-05 46.6 6.0 46 258-304 7-52 (185)
213 PRK07037 extracytoplasmic-func 89.1 1.1 2.5E-05 45.1 7.1 51 861-911 109-159 (163)
214 PRK12536 RNA polymerase sigma 89.0 1 2.2E-05 46.6 6.8 52 860-911 128-179 (181)
215 PF02399 Herpes_ori_bp: Origin 88.9 1.2 2.5E-05 56.5 8.3 104 275-392 48-154 (824)
216 PRK11924 RNA polymerase sigma 88.9 1.1 2.4E-05 45.3 6.8 52 861-912 125-176 (179)
217 PRK12512 RNA polymerase sigma 88.8 1.1 2.4E-05 46.2 6.9 51 861-911 131-181 (184)
218 PRK07940 DNA polymerase III su 88.7 3.6 7.8E-05 48.6 11.9 43 258-301 9-60 (394)
219 PRK05703 flhF flagellar biosyn 88.6 2.5 5.5E-05 50.3 10.6 103 276-412 221-342 (424)
220 PRK09642 RNA polymerase sigma 88.6 1.3 2.8E-05 44.6 7.1 51 861-911 106-156 (160)
221 PRK07003 DNA polymerase III su 88.5 3 6.6E-05 52.9 11.5 43 258-301 20-62 (830)
222 PRK12898 secA preprotein trans 88.5 1.6 3.5E-05 54.5 9.1 74 252-335 101-174 (656)
223 PRK05563 DNA polymerase III su 88.4 4.7 0.0001 49.8 13.0 41 258-298 20-60 (559)
224 PRK14953 DNA polymerase III su 88.4 5.4 0.00012 48.4 13.3 43 258-301 20-62 (486)
225 PRK09639 RNA polymerase sigma 88.2 1.4 3E-05 44.5 7.0 53 861-914 112-164 (166)
226 PRK14962 DNA polymerase III su 88.1 3.9 8.4E-05 49.4 11.9 41 258-298 18-58 (472)
227 PRK12524 RNA polymerase sigma 88.1 1.3 2.9E-05 46.4 7.1 52 861-912 136-187 (196)
228 TIGR02999 Sig-70_X6 RNA polyme 88.1 1.3 2.8E-05 45.5 6.9 49 861-909 134-182 (183)
229 PRK00411 cdc6 cell division co 88.0 2.1 4.5E-05 49.5 9.3 72 258-329 37-110 (394)
230 PRK09643 RNA polymerase sigma 87.9 1.3 2.9E-05 46.3 7.0 53 861-913 134-186 (192)
231 PF13880 Acetyltransf_13: ESCO 87.9 0.45 9.8E-06 43.0 2.9 28 615-642 7-34 (70)
232 PRK05602 RNA polymerase sigma 87.8 1.3 2.9E-05 45.7 6.9 53 860-912 127-179 (186)
233 PF12568 DUF3749: Acetyltransf 87.8 9.1 0.0002 38.6 12.1 80 511-641 10-89 (128)
234 PRK12523 RNA polymerase sigma 87.7 1.4 3.1E-05 45.1 6.9 51 861-911 119-169 (172)
235 PRK08533 flagellar accessory p 87.7 3.8 8.2E-05 44.7 10.5 48 276-325 24-71 (230)
236 KOG0345 ATP-dependent RNA heli 87.7 1 2.2E-05 53.6 6.3 66 255-327 29-101 (567)
237 TIGR02937 sigma70-ECF RNA poly 87.6 1.2 2.6E-05 42.9 6.0 48 861-908 110-157 (158)
238 PRK09637 RNA polymerase sigma 87.6 1.5 3.2E-05 45.7 7.0 52 861-912 106-157 (181)
239 PRK00149 dnaA chromosomal repl 87.5 2.2 4.7E-05 51.0 9.2 40 276-315 148-189 (450)
240 PRK12519 RNA polymerase sigma 87.5 1.3 2.7E-05 46.2 6.5 52 861-912 141-192 (194)
241 PRK12542 RNA polymerase sigma 87.4 1.8 3.8E-05 44.9 7.4 58 860-917 121-178 (185)
242 TIGR00708 cobA cob(I)alamin ad 87.3 8.1 0.00017 40.8 12.2 43 379-430 96-148 (173)
243 TIGR02954 Sig70_famx3 RNA poly 87.3 1.5 3.2E-05 44.7 6.7 50 861-910 119-168 (169)
244 KOG3216 Diamine acetyltransfer 87.2 1.4 3E-05 45.5 6.2 64 612-727 83-146 (163)
245 PF13401 AAA_22: AAA domain; P 87.2 0.8 1.7E-05 44.0 4.4 55 276-330 4-63 (131)
246 TIGR02943 Sig70_famx1 RNA poly 87.1 1.7 3.8E-05 45.4 7.2 52 861-912 131-182 (188)
247 COG1670 RimL Acetyltransferase 87.1 1.8 3.9E-05 43.2 7.1 83 614-747 96-178 (187)
248 PRK12547 RNA polymerase sigma 87.1 1.7 3.7E-05 44.2 7.0 50 861-910 112-161 (164)
249 TIGR03345 VI_ClpV1 type VI sec 87.0 2.1 4.5E-05 55.3 9.2 45 258-304 191-235 (852)
250 PRK12526 RNA polymerase sigma 86.9 1.7 3.7E-05 46.2 7.1 51 860-910 152-202 (206)
251 TIGR02948 SigW_bacill RNA poly 86.9 1.5 3.3E-05 45.0 6.5 51 861-911 136-186 (187)
252 CHL00181 cbbX CbbX; Provisiona 86.8 4.7 0.0001 45.5 10.9 28 278-305 61-88 (287)
253 PRK09641 RNA polymerase sigma 86.8 1.6 3.5E-05 44.8 6.8 51 861-911 136-186 (187)
254 PRK09648 RNA polymerase sigma 86.8 1.8 3.9E-05 45.0 7.1 50 860-909 138-187 (189)
255 COG0507 RecD ATP-dependent exo 86.7 1.1 2.3E-05 56.4 6.4 128 256-423 321-454 (696)
256 TIGR00595 priA primosomal prot 86.6 4.8 0.0001 49.0 11.6 48 281-329 2-49 (505)
257 COG2607 Predicted ATPase (AAA+ 86.6 2.3 5.1E-05 47.1 7.9 70 256-325 65-134 (287)
258 PRK12546 RNA polymerase sigma 86.4 1.6 3.4E-05 46.0 6.5 52 861-912 113-164 (188)
259 PRK06759 RNA polymerase factor 86.4 1.7 3.6E-05 43.4 6.4 46 861-906 106-151 (154)
260 PRK09694 helicase Cas3; Provis 86.4 2.2 4.8E-05 55.1 8.9 52 276-327 301-353 (878)
261 PRK12531 RNA polymerase sigma 86.3 2 4.2E-05 45.1 7.1 51 860-910 140-190 (194)
262 KOG1802 RNA helicase nonsense 86.2 1.5 3.2E-05 54.1 6.7 64 256-326 412-475 (935)
263 PRK12539 RNA polymerase sigma 86.1 1.9 4.2E-05 44.7 6.9 51 860-910 130-180 (184)
264 PRK12528 RNA polymerase sigma 86.1 1.6 3.4E-05 44.1 6.1 47 861-907 113-159 (161)
265 PRK12514 RNA polymerase sigma 86.0 1.9 4.1E-05 44.3 6.8 51 860-910 128-178 (179)
266 PRK06647 DNA polymerase III su 85.9 6 0.00013 48.9 12.0 41 258-298 20-60 (563)
267 PF01443 Viral_helicase1: Vira 85.8 1.8 3.8E-05 46.0 6.6 19 380-398 62-80 (234)
268 PRK12530 RNA polymerase sigma 85.8 2.2 4.7E-05 44.7 7.1 51 861-911 134-184 (189)
269 COG2812 DnaX DNA polymerase II 85.8 0.82 1.8E-05 55.5 4.5 132 257-411 19-157 (515)
270 PRK04217 hypothetical protein; 85.8 2.8 6.1E-05 41.1 7.3 53 860-912 41-93 (110)
271 PRK12520 RNA polymerase sigma 85.8 2.3 5E-05 44.3 7.3 52 861-912 131-182 (191)
272 PRK11923 algU RNA polymerase s 85.7 2 4.3E-05 44.7 6.8 54 860-913 137-190 (193)
273 PRK12516 RNA polymerase sigma 85.6 2.3 4.9E-05 44.6 7.1 52 861-912 116-167 (187)
274 PRK09646 RNA polymerase sigma 85.6 2.1 4.5E-05 44.9 6.8 50 861-910 142-191 (194)
275 PF05729 NACHT: NACHT domain 85.6 1.5 3.4E-05 43.3 5.7 28 277-304 1-28 (166)
276 PRK13919 putative RNA polymera 85.5 2.2 4.7E-05 44.1 6.9 50 861-910 135-184 (186)
277 PRK13709 conjugal transfer nic 85.5 7.7 0.00017 53.6 13.6 127 256-423 415-547 (1747)
278 PRK13695 putative NTPase; Prov 85.5 3.2 7E-05 42.6 8.1 28 279-306 3-30 (174)
279 KOG4144 Arylalkylamine N-acety 85.5 0.85 1.8E-05 47.0 3.7 24 614-637 102-125 (190)
280 PRK12527 RNA polymerase sigma 85.4 2.5 5.5E-05 42.5 7.2 50 861-910 105-154 (159)
281 PRK12525 RNA polymerase sigma 85.4 2.3 4.9E-05 43.5 6.9 50 861-910 118-167 (168)
282 COG1204 Superfamily II helicas 85.4 2.4 5.2E-05 54.0 8.5 139 258-419 35-197 (766)
283 PRK12534 RNA polymerase sigma 85.3 2.2 4.7E-05 44.2 6.8 50 861-910 137-186 (187)
284 PRK10919 ATP-dependent DNA hel 85.1 2.2 4.8E-05 53.6 8.0 66 255-329 3-71 (672)
285 TIGR03346 chaperone_ClpB ATP-d 85.0 2.7 6E-05 54.2 8.9 44 257-302 176-219 (852)
286 PRK09415 RNA polymerase factor 85.0 2.2 4.8E-05 44.1 6.7 51 861-911 127-177 (179)
287 KOG3234 Acetyltransferase, (GN 84.8 1.1 2.5E-05 46.3 4.3 83 615-749 71-154 (173)
288 PF07728 AAA_5: AAA domain (dy 84.8 2.6 5.7E-05 41.3 6.8 85 278-401 1-86 (139)
289 PRK07133 DNA polymerase III su 84.7 8.3 0.00018 48.9 12.6 39 258-296 22-60 (725)
290 PRK12543 RNA polymerase sigma 84.7 2.9 6.3E-05 43.1 7.4 54 861-914 117-170 (179)
291 TIGR00362 DnaA chromosomal rep 84.6 3.8 8.3E-05 48.1 9.2 36 277-313 137-175 (405)
292 PRK12540 RNA polymerase sigma 84.5 2.7 5.8E-05 43.9 7.1 51 861-911 111-161 (182)
293 TIGR02621 cas3_GSU0051 CRISPR- 84.5 7.7 0.00017 50.0 12.2 69 255-330 16-87 (844)
294 TIGR02989 Sig-70_gvs1 RNA poly 84.4 2 4.3E-05 43.0 5.9 49 860-908 110-158 (159)
295 PF12775 AAA_7: P-loop contain 84.4 5.7 0.00012 44.6 10.0 41 256-299 16-56 (272)
296 TIGR02983 SigE-fam_strep RNA p 84.3 2.5 5.4E-05 42.6 6.6 50 861-910 110-159 (162)
297 PRK09645 RNA polymerase sigma 84.3 2.9 6.2E-05 42.7 7.1 50 861-910 118-167 (173)
298 TIGR02985 Sig70_bacteroi1 RNA 84.3 2.4 5.1E-05 42.0 6.3 48 861-908 113-160 (161)
299 PRK12545 RNA polymerase sigma 84.3 2.8 6E-05 44.4 7.2 50 861-910 139-188 (201)
300 PRK09200 preprotein translocas 84.2 2.6 5.7E-05 53.8 8.0 71 255-335 79-149 (790)
301 PRK12537 RNA polymerase sigma 84.2 2.6 5.6E-05 43.7 6.8 50 860-909 132-181 (182)
302 PRK08451 DNA polymerase III su 84.2 7.9 0.00017 47.6 11.8 43 258-300 18-60 (535)
303 PRK09644 RNA polymerase sigma 84.1 2.8 6.2E-05 42.5 6.9 52 860-911 107-158 (165)
304 TIGR02012 tigrfam_recA protein 84.1 7.3 0.00016 44.9 10.9 40 276-315 55-94 (321)
305 TIGR02984 Sig-70_plancto1 RNA 84.0 2.9 6.3E-05 42.9 7.0 49 861-909 140-188 (189)
306 TIGR00603 rad25 DNA repair hel 84.0 8.4 0.00018 49.0 12.1 139 257-413 258-412 (732)
307 PRK12522 RNA polymerase sigma 83.9 3 6.5E-05 42.7 7.0 52 861-912 119-170 (173)
308 TIGR02950 SigM_subfam RNA poly 83.7 1.2 2.6E-05 44.3 3.9 49 861-909 105-153 (154)
309 PRK11773 uvrD DNA-dependent he 83.6 2.9 6.3E-05 52.9 8.1 66 255-329 10-78 (721)
310 PRK08301 sporulation sigma fac 83.5 2.9 6.3E-05 45.1 7.1 53 860-912 177-233 (234)
311 PRK12904 preprotein translocas 83.5 1.3 2.7E-05 56.6 4.8 55 280-335 98-152 (830)
312 PRK14948 DNA polymerase III su 83.5 16 0.00035 45.8 14.2 39 258-296 20-58 (620)
313 COG1875 NYN ribonuclease and A 83.4 6.4 0.00014 46.1 9.9 54 255-316 229-287 (436)
314 TIGR01074 rep ATP-dependent DN 83.4 2.9 6.4E-05 52.1 8.0 66 255-329 2-70 (664)
315 PRK06288 RNA polymerase sigma 83.4 2.9 6.2E-05 46.4 7.1 54 860-913 211-264 (268)
316 PRK11054 helD DNA helicase IV; 83.4 2.8 6.1E-05 52.8 7.8 66 255-329 197-265 (684)
317 TIGR02939 RpoE_Sigma70 RNA pol 83.4 2.7 5.8E-05 43.3 6.5 52 860-911 137-188 (190)
318 PRK09112 DNA polymerase III su 83.1 3.7 8E-05 47.8 8.1 43 258-301 27-69 (351)
319 PF00176 SNF2_N: SNF2 family N 83.0 8.3 0.00018 42.1 10.5 66 259-325 2-77 (299)
320 TIGR01075 uvrD DNA helicase II 82.9 2.8 6.1E-05 53.0 7.6 66 255-329 5-73 (715)
321 PF13177 DNA_pol3_delta2: DNA 82.9 16 0.00034 37.7 11.8 38 259-296 2-39 (162)
322 smart00421 HTH_LUXR helix_turn 82.8 4.5 9.7E-05 32.9 6.4 44 861-905 3-46 (58)
323 PHA02535 P terminase ATPase su 82.8 23 0.00049 44.0 14.8 122 254-394 122-254 (581)
324 PRK06930 positive control sigm 82.8 3.8 8.2E-05 43.0 7.3 51 861-911 114-164 (170)
325 PRK14965 DNA polymerase III su 82.7 9.2 0.0002 47.4 11.7 43 258-301 20-62 (576)
326 PHA00729 NTP-binding motif con 82.5 5.4 0.00012 43.8 8.6 27 266-293 8-34 (226)
327 PRK12532 RNA polymerase sigma 82.5 3.5 7.6E-05 43.1 7.0 50 861-910 136-185 (195)
328 PRK09647 RNA polymerase sigma 82.4 3.7 8E-05 43.8 7.2 52 861-912 138-189 (203)
329 PRK12515 RNA polymerase sigma 82.2 3.9 8.5E-05 42.5 7.2 52 860-911 130-181 (189)
330 PRK12533 RNA polymerase sigma 82.2 3.2 6.9E-05 44.9 6.7 53 860-912 133-185 (216)
331 TIGR02947 SigH_actino RNA poly 82.2 2.1 4.5E-05 44.7 5.1 52 861-912 131-182 (193)
332 TIGR02980 SigBFG RNA polymeras 82.1 3.5 7.6E-05 44.3 7.0 50 860-909 177-226 (227)
333 PRK12511 RNA polymerase sigma 82.1 3.9 8.4E-05 42.8 7.1 52 861-912 111-162 (182)
334 PRK12544 RNA polymerase sigma 82.1 4 8.6E-05 43.6 7.3 51 860-910 147-197 (206)
335 TIGR02952 Sig70_famx2 RNA poly 81.6 3.5 7.7E-05 41.6 6.4 49 860-908 121-169 (170)
336 COG4096 HsdR Type I site-speci 81.5 3.3 7.1E-05 52.5 7.2 63 254-318 165-228 (875)
337 PRK05803 sporulation sigma fac 81.4 3.7 7.9E-05 44.5 6.9 52 861-912 175-230 (233)
338 TIGR00631 uvrb excinuclease AB 81.4 10 0.00022 47.8 11.5 64 256-325 11-74 (655)
339 PRK09649 RNA polymerase sigma 81.3 3.1 6.7E-05 43.3 6.1 51 860-910 129-179 (185)
340 PRK06986 fliA flagellar biosyn 81.3 3.7 8.1E-05 44.5 6.9 51 860-910 183-233 (236)
341 TIGR03117 cas_csf4 CRISPR-asso 81.2 6.2 0.00013 49.4 9.5 64 258-324 1-65 (636)
342 KOG0923 mRNA splicing factor A 81.0 4.5 9.7E-05 50.2 7.8 246 265-567 272-555 (902)
343 PF08444 Gly_acyl_tr_C: Aralky 81.0 0.72 1.6E-05 43.6 1.1 48 589-646 5-52 (89)
344 PF07652 Flavi_DEAD: Flaviviru 80.9 2.4 5.3E-05 43.6 4.9 127 277-417 5-141 (148)
345 TIGR00963 secA preprotein tran 80.9 3.1 6.8E-05 52.6 6.8 56 280-336 73-128 (745)
346 cd01393 recA_like RecA is a b 80.8 6.2 0.00014 41.9 8.3 40 276-315 19-64 (226)
347 PRK09651 RNA polymerase sigma 80.8 3.6 7.8E-05 42.2 6.3 49 861-909 119-167 (172)
348 PRK11034 clpA ATP-dependent Cl 80.8 8.3 0.00018 49.3 10.6 31 263-294 195-225 (758)
349 PRK12538 RNA polymerase sigma 80.6 4 8.6E-05 44.6 6.9 51 861-911 171-221 (233)
350 PF01637 Arch_ATPase: Archaeal 80.6 1.5 3.2E-05 45.8 3.4 50 275-324 19-68 (234)
351 cd06170 LuxR_C_like C-terminal 80.5 5.7 0.00012 32.5 6.3 43 862-905 1-43 (57)
352 PRK06851 hypothetical protein; 80.3 2.3 4.9E-05 49.8 5.1 56 265-321 20-76 (367)
353 PRK12541 RNA polymerase sigma 80.2 4.2 9.1E-05 41.0 6.5 47 861-907 112-158 (161)
354 KOG0926 DEAH-box RNA helicase 80.2 4 8.7E-05 51.5 7.2 116 265-401 263-395 (1172)
355 PRK06995 flhF flagellar biosyn 79.8 5.4 0.00012 48.4 8.1 40 276-315 256-296 (484)
356 TIGR02881 spore_V_K stage V sp 79.7 8.5 0.00019 42.4 9.2 24 277-300 43-66 (261)
357 PRK07670 RNA polymerase sigma 79.7 4.7 0.0001 44.2 7.1 51 860-910 200-250 (251)
358 PRK03992 proteasome-activating 79.6 16 0.00034 43.1 11.7 17 276-292 165-181 (389)
359 PF07374 DUF1492: Protein of u 79.6 4.4 9.6E-05 38.7 5.9 43 863-905 57-99 (100)
360 PRK12535 RNA polymerase sigma 79.5 4.8 0.0001 42.6 6.8 52 861-912 133-184 (196)
361 TIGR02928 orc1/cdc6 family rep 79.4 7.1 0.00015 44.6 8.7 73 257-329 21-99 (365)
362 PRK14721 flhF flagellar biosyn 79.1 7.8 0.00017 46.3 9.0 40 276-315 191-232 (420)
363 PF00196 GerE: Bacterial regul 79.0 5.5 0.00012 33.9 5.8 44 861-905 3-46 (58)
364 PRK12518 RNA polymerase sigma 78.8 2.7 5.8E-05 42.9 4.6 51 861-911 120-170 (175)
365 cd03282 ABC_MSH4_euk MutS4 hom 78.8 0.5 1.1E-05 50.6 -0.8 20 276-295 29-48 (204)
366 smart00489 DEXDc3 DEAD-like he 78.7 9.3 0.0002 43.2 9.2 68 256-326 10-82 (289)
367 smart00488 DEXDc2 DEAD-like he 78.7 9.3 0.0002 43.2 9.2 68 256-326 10-82 (289)
368 PRK14959 DNA polymerase III su 78.7 13 0.00028 46.5 11.0 40 259-298 21-60 (624)
369 cd00561 CobA_CobO_BtuR ATP:cor 78.6 17 0.00038 37.8 10.4 44 378-430 93-146 (159)
370 TIGR03499 FlhF flagellar biosy 78.6 5 0.00011 45.1 6.9 40 276-315 194-235 (282)
371 PF14542 Acetyltransf_CG: GCN5 78.5 3.1 6.7E-05 38.0 4.4 33 613-645 22-54 (78)
372 PRK12513 RNA polymerase sigma 78.5 3.1 6.7E-05 43.4 5.0 50 861-910 139-188 (194)
373 TIGR01243 CDC48 AAA family ATP 78.4 14 0.0003 47.1 11.5 28 879-906 645-673 (733)
374 PRK12899 secA preprotein trans 78.3 3.4 7.3E-05 53.4 6.0 71 256-334 94-164 (970)
375 TIGR02846 spore_sigmaK RNA pol 78.2 4.9 0.00011 43.4 6.6 50 860-909 173-226 (227)
376 PRK10416 signal recognition pa 78.1 22 0.00048 40.9 12.1 39 276-314 114-152 (318)
377 TIGR02479 FliA_WhiG RNA polyme 78.0 5.5 0.00012 42.8 6.8 50 860-909 174-223 (224)
378 TIGR03001 Sig-70_gmx1 RNA poly 77.9 6 0.00013 43.6 7.2 52 860-911 160-211 (244)
379 PRK09640 RNA polymerase sigma 77.9 2.8 6E-05 43.6 4.4 52 861-912 134-185 (188)
380 PF00448 SRP54: SRP54-type pro 77.7 31 0.00068 36.8 12.3 50 277-326 2-53 (196)
381 PRK09361 radB DNA repair and r 77.5 10 0.00022 40.6 8.7 38 276-313 23-60 (225)
382 TIGR00678 holB DNA polymerase 77.4 27 0.00059 36.3 11.6 36 266-301 4-39 (188)
383 PRK07408 RNA polymerase sigma 77.4 6.1 0.00013 43.7 7.1 51 860-910 202-252 (256)
384 PRK13104 secA preprotein trans 77.3 2 4.4E-05 55.1 3.7 56 280-336 99-154 (896)
385 PRK14086 dnaA chromosomal repl 77.3 9.4 0.0002 47.6 9.2 40 863-902 555-594 (617)
386 TIGR02903 spore_lon_C ATP-depe 77.2 16 0.00034 45.8 11.3 40 259-299 159-198 (615)
387 PRK08583 RNA polymerase sigma 77.0 6.1 0.00013 43.4 7.0 50 861-910 205-254 (257)
388 PRK08295 RNA polymerase factor 76.9 6.9 0.00015 41.0 7.1 50 861-911 155-204 (208)
389 PRK12517 RNA polymerase sigma 76.8 7.2 0.00016 40.9 7.2 51 861-911 128-178 (188)
390 cd00983 recA RecA is a bacter 76.8 5 0.00011 46.3 6.4 42 276-317 55-96 (325)
391 TIGR01073 pcrA ATP-dependent D 76.8 6.1 0.00013 50.1 7.8 66 255-329 5-73 (726)
392 PRK13341 recombination factor 76.7 12 0.00027 47.6 10.3 27 268-295 45-71 (725)
393 PRK06811 RNA polymerase factor 76.6 5.8 0.00013 41.4 6.4 49 861-909 131-179 (189)
394 PF07279 DUF1442: Protein of u 76.3 12 0.00025 41.0 8.6 61 263-325 29-89 (218)
395 PF04665 Pox_A32: Poxvirus A32 76.1 3.4 7.3E-05 45.8 4.6 45 278-325 15-59 (241)
396 COG1203 CRISPR-associated heli 76.0 7.7 0.00017 49.4 8.3 69 255-327 196-268 (733)
397 PRK14723 flhF flagellar biosyn 75.9 17 0.00038 46.4 11.2 49 276-324 185-237 (767)
398 PRK05564 DNA polymerase III su 75.7 29 0.00062 39.4 12.1 41 259-299 9-49 (313)
399 KOG2488 Acetyltransferase (GNA 75.6 2.8 6E-05 44.8 3.6 71 613-737 120-190 (202)
400 PRK07471 DNA polymerase III su 75.3 33 0.00071 40.3 12.7 43 258-301 23-65 (365)
401 PRK05911 RNA polymerase sigma 75.3 8.1 0.00018 42.8 7.4 51 861-911 205-255 (257)
402 PF04967 HTH_10: HTH DNA bindi 75.0 10 0.00022 32.7 6.1 45 862-906 1-52 (53)
403 PRK07500 rpoH2 RNA polymerase 74.8 7.5 0.00016 43.9 7.1 50 861-910 227-278 (289)
404 TIGR02639 ClpA ATP-dependent C 74.8 13 0.00028 47.4 9.9 37 258-295 186-222 (731)
405 PRK06871 DNA polymerase III su 74.7 41 0.00089 39.0 13.0 166 259-474 7-178 (325)
406 TIGR02850 spore_sigG RNA polym 74.5 6.5 0.00014 43.3 6.4 49 860-908 205-253 (254)
407 COG1419 FlhF Flagellar GTP-bin 74.2 13 0.00029 44.1 9.0 50 276-325 203-256 (407)
408 PRK09638 RNA polymerase sigma 74.1 4.5 9.7E-05 41.3 4.7 50 861-910 126-175 (176)
409 cd03214 ABC_Iron-Siderophores_ 73.9 5.2 0.00011 41.5 5.1 60 276-336 25-89 (180)
410 smart00534 MUTSac ATPase domai 73.9 6.8 0.00015 41.0 6.0 19 279-297 2-20 (185)
411 cd01123 Rad51_DMC1_radA Rad51_ 73.8 5.9 0.00013 42.4 5.7 48 276-323 19-72 (235)
412 PRK11922 RNA polymerase sigma 73.5 5.5 0.00012 43.1 5.4 51 861-911 149-199 (231)
413 cd01394 radB RadB. The archaea 73.5 10 0.00022 40.3 7.3 37 276-312 19-55 (218)
414 cd01121 Sms Sms (bacterial rad 73.4 10 0.00022 44.5 8.0 38 276-313 82-119 (372)
415 TIGR03714 secA2 accessory Sec 73.3 15 0.00033 46.8 9.9 56 279-335 86-141 (762)
416 COG1703 ArgK Putative periplas 73.2 7.9 0.00017 44.3 6.6 53 265-318 39-92 (323)
417 PRK08215 sporulation sigma fac 73.1 8.4 0.00018 42.5 6.8 50 860-909 208-257 (258)
418 PRK08058 DNA polymerase III su 72.8 38 0.00083 38.9 12.2 38 258-295 10-47 (329)
419 PF12746 GNAT_acetyltran: GNAT 72.4 3.7 7.9E-05 46.1 3.8 27 617-643 192-218 (265)
420 CHL00176 ftsH cell division pr 72.4 26 0.00056 44.2 11.5 19 276-294 216-234 (638)
421 PRK12326 preprotein translocas 72.3 7.1 0.00015 49.4 6.5 128 285-432 100-243 (764)
422 PRK14088 dnaA chromosomal repl 72.2 9.1 0.0002 45.8 7.3 39 863-901 373-411 (440)
423 PRK12727 flagellar biosynthesi 72.2 24 0.00051 43.6 10.7 39 276-314 350-390 (559)
424 PRK06704 RNA polymerase factor 72.2 9.3 0.0002 41.9 6.8 50 861-910 116-165 (228)
425 TIGR01425 SRP54_euk signal rec 71.8 23 0.00049 42.6 10.3 39 276-315 100-138 (429)
426 PRK03975 tfx putative transcri 71.8 13 0.00028 38.1 7.2 52 860-912 5-56 (141)
427 PRK12906 secA preprotein trans 71.6 5.9 0.00013 50.6 5.7 71 280-351 97-181 (796)
428 TIGR02941 Sigma_B RNA polymera 71.4 10 0.00022 41.7 6.9 50 860-909 204-253 (255)
429 TIGR02960 SigX5 RNA polymerase 71.4 7.8 0.00017 43.7 6.2 51 860-910 141-191 (324)
430 PRK05572 sporulation sigma fac 71.4 10 0.00022 41.6 7.0 51 860-910 201-251 (252)
431 COG0556 UvrB Helicase subunit 70.9 14 0.00031 45.0 8.3 62 258-325 16-77 (663)
432 PRK04914 ATP-dependent helicas 70.8 16 0.00034 48.0 9.4 138 255-413 153-316 (956)
433 KOG0328 Predicted ATP-dependen 70.7 1.2 2.6E-05 50.1 -0.5 63 256-325 51-115 (400)
434 TIGR01242 26Sp45 26S proteasom 70.6 35 0.00076 39.6 11.4 18 276-293 156-173 (364)
435 PRK13531 regulatory ATPase Rav 70.5 25 0.00055 42.9 10.4 23 379-401 106-128 (498)
436 PRK05298 excinuclease ABC subu 70.5 33 0.0007 43.3 11.8 69 254-328 12-80 (652)
437 PRK08154 anaerobic benzoate ca 70.5 8.1 0.00018 44.0 6.1 40 256-295 109-152 (309)
438 CHL00095 clpC Clp protease ATP 70.4 14 0.00031 47.7 8.9 42 259-302 184-225 (821)
439 COG1595 RpoE DNA-directed RNA 70.4 11 0.00024 39.0 6.7 53 860-912 126-178 (182)
440 COG2401 ABC-type ATPase fused 70.2 3.1 6.7E-05 49.3 2.7 35 610-644 238-272 (593)
441 PRK07122 RNA polymerase sigma 69.5 11 0.00023 42.1 6.7 50 860-909 214-263 (264)
442 KOG0337 ATP-dependent RNA heli 69.5 9.2 0.0002 45.4 6.2 65 255-326 44-111 (529)
443 PRK06731 flhF flagellar biosyn 69.0 42 0.0009 37.9 11.2 37 277-313 76-112 (270)
444 PF03308 ArgK: ArgK protein; 69.0 12 0.00025 42.1 6.7 50 267-317 19-69 (266)
445 PRK11823 DNA repair protein Ra 68.9 12 0.00026 45.0 7.3 38 276-313 80-117 (446)
446 PRK09354 recA recombinase A; P 68.9 38 0.00082 39.7 11.1 42 276-317 60-101 (349)
447 TIGR02885 spore_sigF RNA polym 68.7 11 0.00024 40.6 6.5 49 860-908 182-230 (231)
448 PRK10865 protein disaggregatio 68.3 23 0.00051 46.0 10.2 32 140-171 303-334 (857)
449 PRK09636 RNA polymerase sigma 68.3 10 0.00022 42.5 6.3 49 861-909 115-163 (293)
450 COG1197 Mfd Transcription-repa 67.9 37 0.00079 45.1 11.6 80 242-330 588-668 (1139)
451 TIGR02957 SigX4 RNA polymerase 67.8 12 0.00026 41.8 6.7 49 860-908 107-155 (281)
452 PRK12723 flagellar biosynthesi 67.6 22 0.00047 42.2 8.9 38 276-314 174-216 (388)
453 TIGR02393 RpoD_Cterm RNA polym 67.6 13 0.00028 40.4 6.7 49 861-909 176-228 (238)
454 TIGR02859 spore_sigH RNA polym 67.5 12 0.00026 38.9 6.2 47 862-909 151-197 (198)
455 PHA00350 putative assembly pro 67.4 34 0.00074 40.7 10.5 32 278-311 3-35 (399)
456 cd01120 RecA-like_NTPases RecA 67.2 9.6 0.00021 37.2 5.2 37 279-315 2-38 (165)
457 cd01129 PulE-GspE PulE/GspE Th 67.2 13 0.00028 41.6 6.7 46 250-300 59-104 (264)
458 KOG0925 mRNA splicing factor A 67.1 11 0.00025 45.4 6.4 140 265-430 54-210 (699)
459 TIGR02835 spore_sigmaE RNA pol 66.9 15 0.00032 39.9 7.0 52 860-911 177-232 (234)
460 TIGR00721 tfx DNA-binding prot 66.9 18 0.00039 37.0 7.0 52 860-912 5-56 (137)
461 KOG4135 Predicted phosphogluco 66.8 8.5 0.00018 39.8 4.6 23 621-643 115-137 (185)
462 PRK13107 preprotein translocas 66.7 7.9 0.00017 50.0 5.4 55 280-335 99-153 (908)
463 PF01078 Mg_chelatase: Magnesi 66.6 17 0.00037 39.5 7.2 24 380-403 106-129 (206)
464 TIGR01636 phage_rinA phage tra 66.5 18 0.00039 36.4 6.9 49 861-909 82-132 (134)
465 TIGR03346 chaperone_ClpB ATP-d 66.4 23 0.00051 45.9 9.7 33 140-172 298-330 (852)
466 KOG1969 DNA replication checkp 66.2 16 0.00035 46.2 7.7 46 276-326 326-373 (877)
467 PHA02244 ATPase-like protein 66.0 43 0.00092 39.7 10.7 18 276-293 119-136 (383)
468 PF04297 UPF0122: Putative hel 66.0 14 0.0003 35.9 5.7 50 861-910 17-66 (101)
469 PRK12724 flagellar biosynthesi 66.0 28 0.00061 41.8 9.4 39 276-314 223-262 (432)
470 TIGR01637 phage_arpU phage tra 65.8 17 0.00036 36.1 6.5 50 861-910 79-130 (132)
471 PRK12427 flagellar biosynthesi 65.8 14 0.00029 40.4 6.4 48 860-907 182-229 (231)
472 TIGR02394 rpoS_proteo RNA poly 65.7 16 0.00034 41.1 7.0 52 860-911 221-276 (285)
473 TIGR00150 HI0065_YjeE ATPase, 65.5 17 0.00037 36.8 6.5 38 276-317 22-59 (133)
474 COG3267 ExeA Type II secretory 65.4 26 0.00057 39.3 8.5 117 257-401 34-152 (269)
475 cd01130 VirB11-like_ATPase Typ 65.1 16 0.00035 38.2 6.6 42 254-302 9-50 (186)
476 PRK13834 putative autoinducer 65.1 1.3E+02 0.0029 32.5 13.7 38 710-748 148-185 (207)
477 PRK07399 DNA polymerase III su 64.6 93 0.002 35.8 13.1 43 258-301 8-50 (314)
478 TIGR02639 ClpA ATP-dependent C 64.1 30 0.00066 44.1 9.9 43 258-301 458-508 (731)
479 PF05876 Terminase_GpA: Phage 63.7 11 0.00023 46.7 5.7 146 265-420 23-186 (557)
480 PRK07667 uridine kinase; Provi 63.7 23 0.00049 37.4 7.4 40 276-315 17-56 (193)
481 PF00931 NB-ARC: NB-ARC domain 63.4 17 0.00036 39.9 6.6 67 263-330 5-75 (287)
482 COG2805 PilT Tfp pilus assembl 63.4 12 0.00025 43.1 5.4 58 252-315 103-163 (353)
483 PRK11034 clpA ATP-dependent Cl 63.1 25 0.00054 45.1 8.9 43 258-301 462-512 (758)
484 COG2804 PulE Type II secretory 62.9 14 0.00031 44.8 6.3 59 250-315 237-295 (500)
485 TIGR02392 rpoH_proteo alternat 62.9 18 0.00039 40.3 6.8 49 861-909 218-268 (270)
486 CHL00095 clpC Clp protease ATP 62.6 27 0.00058 45.2 9.2 43 258-301 513-563 (821)
487 TIGR01407 dinG_rel DnaQ family 62.6 24 0.00052 45.8 8.7 66 255-324 246-311 (850)
488 PRK15201 fimbriae regulatory p 62.3 19 0.00041 38.5 6.3 46 860-906 132-177 (198)
489 PRK06851 hypothetical protein; 62.2 17 0.00037 42.7 6.7 67 251-321 193-260 (367)
490 PRK08241 RNA polymerase factor 62.1 13 0.00029 42.3 5.8 48 860-907 152-199 (339)
491 PRK11608 pspF phage shock prot 62.0 43 0.00093 38.5 9.8 22 380-401 100-121 (326)
492 cd03287 ABC_MSH3_euk MutS3 hom 61.9 18 0.00039 39.5 6.4 23 276-298 31-53 (222)
493 TIGR01650 PD_CobS cobaltochela 61.8 55 0.0012 38.0 10.5 20 276-295 64-83 (327)
494 TIGR01241 FtsH_fam ATP-depende 61.6 39 0.00084 41.0 9.8 19 276-294 88-106 (495)
495 PLN03025 replication factor C 61.5 16 0.00034 41.7 6.1 42 258-300 17-58 (319)
496 TIGR01069 mutS2 MutS2 family p 61.3 21 0.00046 45.9 7.8 23 277-299 323-345 (771)
497 PRK08699 DNA polymerase III su 61.2 84 0.0018 36.4 11.9 113 273-401 18-134 (325)
498 PRK09191 two-component respons 61.1 18 0.00038 38.9 6.2 51 860-910 87-137 (261)
499 cd01983 Fer4_NifH The Fer4_Nif 60.8 50 0.0011 29.1 8.2 27 279-305 2-28 (99)
500 TIGR03018 pepcterm_TyrKin exop 60.7 28 0.00061 37.0 7.6 49 274-322 33-84 (207)
No 1
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=100.00 E-value=7.5e-321 Score=2678.84 Aligned_cols=1007 Identities=60% Similarity=0.989 Sum_probs=960.6
Q ss_pred CchhHHHHHHHHHHHhHhcCeeEEEEEEeCCchhhHHHHHHHHHhhhhcCCCeEEEEeeCCcchhhhHHHHHHHHHHHHh
Q 001672 1 MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHKKKRQKQIKKLMQ 80 (1033)
Q Consensus 1 ~~kk~d~ri~~Lien~v~~~~Rs~~vivGd~~~~qv~~lh~~l~~~~~~~~psvLwcyk~~l~~ss~~kkR~~~~kk~~~ 80 (1033)
||||+|+|||++|||||+.+|||||||+||+++|||||||+||++++++++|+||||||++++||||||||++++|+.++
T Consensus 1 mrkk~D~RIrtliengv~~~hRS~fvvvGDkardQvp~lh~iLsks~vk~~psVlWcyK~~l~~sshrkkr~kk~kk~~~ 80 (1011)
T KOG2036|consen 1 MRKKVDGRIRTLIENGVKLRHRSMFVVVGDKARDQVPNLHHILSKSTVKARPSVLWCYKKDLGFSSHRKKRAKKIKKAIK 80 (1011)
T ss_pred CcchhhhhHHHHHHccccccceeEEEEEccchhhhhhHHHHHHhhcccCCCCceEEEeeccccchhhhHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccccCCccccchhhhhhhcccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCCchhhhhh
Q 001672 81 RGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLC 160 (1033)
Q Consensus 81 ~g~~~~~~~d~f~~F~~~~~Ir~~~Yket~kiLG~T~~~lVlqdfe~ltPN~LartieTV~GGGlvvLLl~~~~sl~qly 160 (1033)
+|.+|++++|||++|+++++||||||||||+||||||||||||||||+|||+||||||||||||+|||||.++.||+|||
T Consensus 81 ~g~~~~~~~D~f~lFi~~~~I~~cyYkEsekILGnT~gmciLQDFEALTPNLLArTiETVeGGGlVVLLL~sl~SLkqLy 160 (1011)
T KOG2036|consen 81 RGTLDPNSEDPFSLFISSTNIRYCYYKESEKILGNTFGMCILQDFEALTPNLLARTIETVEGGGLVVLLLKSLNSLKQLY 160 (1011)
T ss_pred ccCCCccccCcHHHHhhccceEEEEeccHHHhhccccceEEeehhhhcChhhhhheeeeeecCcEEEEeHhhhhhHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCcccchhHHHHHHHhhhcCCcEEEEeCCCCeeccCCCccccccCCCCCCccCchhhHhhHHHHHhh
Q 001672 161 TMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQ 240 (1033)
Q Consensus 161 t~~md~h~r~rt~~~~~v~~rF~eRFi~sL~~~~~~lv~DdelnvlP~s~~~~~i~~~~~~~~~~~~~~~~~~l~~lk~~ 240 (1033)
||+||||+|||||+|+++++|||||||+||++|++|+|+||++|+||+|+|.++++++|+. ++++.++.+.++++||++
T Consensus 161 Tm~mDVH~R~rTEaH~ev~~RfNeRfilSLasc~~clv~DDeLnvLplssh~~nv~~~P~~-~~~~~~~~e~~lk~Lkes 239 (1011)
T KOG2036|consen 161 TMSMDVHSRYRTEAHSEVTARFNERFILSLASCKNCLVLDDELNVLPLSSHIKNVEAVPPK-DDENLSPSERELKELKES 239 (1011)
T ss_pred heeeeHHhhhccccchhhhhhhhHHHHHHHhcCCceEEEcCccccccccccccccccCCCc-ccccCChhhhhhHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999984 457788999999999999
Q ss_pred hccCCCCCcccccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHH
Q 001672 241 LCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKT 320 (1033)
Q Consensus 241 l~~~~p~~~L~~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~t 320 (1033)
+.+++|+|+|+++|+|.||++||++|+++|.+|++|.++.|||+|||||||||||++|+|+++||+|||||||||||++|
T Consensus 240 l~~~~P~G~Lv~~~kT~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkT 319 (1011)
T KOG2036|consen 240 LSDDQPAGPLVGLCKTLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKT 319 (1011)
T ss_pred hcCCCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHh
Q 001672 321 LFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSL 400 (1033)
Q Consensus 321 lFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~L 400 (1033)
||||+++|||+|+|+||+||+||||+||+|+|||+||||||+||||||||+|.|..+++||||||||||||||+|+|++|
T Consensus 320 lFeFv~kGfDaL~Yqeh~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAIPLplvk~L 399 (1011)
T KOG2036|consen 320 LFEFVFKGFDALEYQEHVDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAIPLPLVKKL 399 (1011)
T ss_pred HHHHHHcchhhhcchhhcchhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEecccCCCCCCcchhHHHHHHhhhcCCCCCC--CcCCCccCcceeEEEeccccccCCCCcHHHHHHHhccCC
Q 001672 401 LGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAK--GVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLD 478 (1033)
Q Consensus 401 l~~y~V~lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~--~~~~~~~~~~~~ei~L~ePIRya~gDPlE~WL~~lL~LD 478 (1033)
+|||+|||||||||||||||+||||++||||+|+..++. +..+...|+.+++++|+|||||++|||||+|||++||||
T Consensus 400 igPylVfmaSTinGYEGTGRSlSlKLlqqLr~qs~~~~~~~~k~~~~sg~~~kei~l~EsIRY~~gD~IE~WLn~lLcLD 479 (1011)
T KOG2036|consen 400 IGPYLVFMASTINGYEGTGRSLSLKLLQQLRKQSRASNARENKSSSKSGRTLKEISLEESIRYAPGDPIEKWLNRLLCLD 479 (1011)
T ss_pred hcceeEEEeecccccccccceehHHHHHHHHHhccccccccCcccccccceeccccccccccCCCCCcHHHHHhhhhhhc
Confidence 999999999999999999999999999999999865333 111334689999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccceeeeCcccccccCcCcHHHHHHHHHHHHhcccCCChhHHHHhhcCCCCeEEEEecCCcccCC
Q 001672 479 VMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKN 558 (1033)
Q Consensus 479 a~~~~~~~~~~p~p~~c~l~~Vnrd~Lfs~h~~sE~fLqq~~~LlV~AHYknsPnDLqlLlDaP~h~lfvL~~p~~~~~~ 558 (1033)
|+...+...+||+|++|+|||||||+|||||++||.|||+||+|||+|||||||||||||+|||+||||||++|++++++
T Consensus 480 as~~~~~~~g~P~Ps~CeLyyVnRdtLFSyh~~sE~FLqr~mal~VSSHYKNSPNDLQllsDAPaH~LFvLl~PVd~~~~ 559 (1011)
T KOG2036|consen 480 ASNCLPITSGCPSPSACELYYVNRDTLFSYHKASEAFLQRLMALYVSSHYKNSPNDLQLLSDAPAHHLFVLLGPVDPSQN 559 (1011)
T ss_pred cccCCcccCCCCChhHceEEEEcchhhhcCCchHHHHHHHHHHHHHHHhccCCchhhhhhccCcccceEEEecCcCcccC
Confidence 99987788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHhhhcCCCCCCCcceEEEEEeeCcccccCChHHHHHHHH
Q 001672 559 QLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELL 638 (1033)
Q Consensus 559 ~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIP~~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L 638 (1033)
.+|+|+||+|||+||.||++++++++++|+|+.||||||++++||+|.+|+.++|+|||||||||+||+||||+|++++|
T Consensus 560 ~iPdvlcviQv~lEG~isr~si~~sL~~G~~a~GdlIpW~vseQf~D~~F~~l~GaRIVRIAvhP~y~~MGYGsrAvqLL 639 (1011)
T KOG2036|consen 560 AIPDVLCVIQVCLEGRISRQSIENSLRRGKRAAGDLIPWTVSEQFQDEDFPKLSGARIVRIAVHPEYQKMGYGSRAVQLL 639 (1011)
T ss_pred CCCcceEEEEEeecceecHHHHHHHHhccccccCCccceehhhhhcccchhcccCceEEEEEeccchhccCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHH
Q 001672 639 TRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWR 718 (1033)
Q Consensus 639 ~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~~~~~dylGvSFG~T~~Ll~FW~ 718 (1033)
.+||+|++++++|+. .+....+.+++++ ++++|++|.|+||++|||||.+|+|++|+.+||+|||||+|++|++||+
T Consensus 640 ~~y~eG~~~~i~e~~--~~~~~~~k~v~e~-~~vsllee~i~pR~~lppLL~~L~er~perldylGvSfGLT~~L~kFWk 716 (1011)
T KOG2036|consen 640 TDYFEGKFTSISEDV--LAVDHSIKRVEEA-EKVSLLEEQIKPRKDLPPLLLKLSERPPERLDYLGVSFGLTPSLLKFWK 716 (1011)
T ss_pred HHHHhccCCCccccc--cccCccccccchh-hhhhhhhhhcccccCCCceeeEcccCCCcccceeeecccCCHHHHHHHH
Confidence 999999999998543 2223455666665 7899999999999999999999999999999999999999999999999
Q ss_pred HCCCeEEEeeecccCCCCcceEEEEccCCccccccccccccchHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHhcCCcc
Q 001672 719 KHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKI 798 (1033)
Q Consensus 719 k~gF~pvylrq~~n~~tGEhS~imlk~L~~~~~~~~~~~~~~wl~~~~~dF~~rf~~lL~~~~fr~l~~~lal~lL~~~~ 798 (1033)
|+||+||||||+.|+.||||||||||+|+. +...|+..|++||++||+.+| ++.|++|++.+|+++|++..
T Consensus 717 ~~gF~PvylrQt~n~lTGEHtcimLk~L~~--------~e~~wl~~f~qdFr~Rf~~lL-s~~F~~f~~~laLslL~~~~ 787 (1011)
T KOG2036|consen 717 KNGFVPVYLRQTSNDLTGEHTCIMLKTLEG--------DESGWLGAFYQDFRRRFLKLL-SYDFKKFTAKLALSLLQNKN 787 (1011)
T ss_pred hcCceeEEeeccccccccceeEEEEecCCC--------cccchHHHHHHHHHHHHHHHh-hHHHhccCHHHHHHHhcccc
Confidence 999999999999999999999999999997 667899999999999999999 99999999999999999887
Q ss_pred cCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhcCccchhhhhchHHHHHHHHhhccCC-CCccHHHHHHHHHHHhcC
Q 001672 799 NFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLP-VTLSYVQAAVLLYIGMLG 877 (1033)
Q Consensus 799 ~~~~~~~~~~~~~l~~~~~~~~ls~~dl~rL~~ya~~~~dy~~i~Dllp~La~lyf~~~~~-~~Ls~~q~~iLla~gLQ~ 877 (1033)
...+ ++.....++..+++.+|+|+|++||++|++|++|||+|.|++|.||++||.++++ +.||.+|++||+|+|||+
T Consensus 788 ~~~~--~~~~~~~l~~~~l~~~fsp~Dl~Rl~~ys~n~vD~~li~Dlip~ia~lYF~~klp~~~Ls~vq~siLL~lGlQ~ 865 (1011)
T KOG2036|consen 788 NGKE--VSTLSSVLTREELDGYFSPYDLKRLRSYSRNLVDFHLIVDLIPDIAHLYFEGKLPSVKLSVVQSSILLALGLQH 865 (1011)
T ss_pred cCCC--CcccccccchHHhhcccChhhHHHHHHHhcCCchhhHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHhcccc
Confidence 6652 2333456788899999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchhHHhhCCCCCccCcccccccchhHHHHhhHHHHHHHHHHHHhc
Q 001672 878 QDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEG 957 (1033)
Q Consensus 878 ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 957 (1033)
|+++.|++||+||++|++++|.|+++++++||+++.+++||++||++++..++|+..++++||+|+|+|++++||+++++
T Consensus 866 k~vd~i~kel~Lp~~Q~~all~k~~kk~~~~~~~v~~~~ie~~l~~~~~~~~e~~~~sl~~dl~e~ake~~~~~r~~~~~ 945 (1011)
T KOG2036|consen 866 KSVDAIEKELNLPSNQLLALLTKAMKKLSKYFDEVEEKAIEETLPREKDRVNEPTPVSLEDDLEEAAKEAEEQMREKQKE 945 (1011)
T ss_pred CCHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhcCCcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred cCCccccccccccCChhHHHHHHhcCCCCCCCCceEEEecCccccCCccccccccccccccCCCCCCCCccccc
Q 001672 958 LLNPELLQQYAIVDKNADLEKALQSGGGKIAAGGVISVKSSKSKIDKPAKHKESHQSGKKRNKDVSGSKSNKKR 1031 (1033)
Q Consensus 958 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1033)
+++ ++|++|+|.|++++|.+|+.+.+.+ ...++||+|+++++ ++.+++.+|++.+.+.++|||.|
T Consensus 946 L~~-~~L~~y~i~gd~e~~a~~~~~~~~~-~~~~v~S~Ks~~kr-------~~~~~~~~k~~~~k~~~~~kk~~ 1010 (1011)
T KOG2036|consen 946 LKA-EELDKYAIIGDEEEWAEALEKIGSS-GGIGVVSVKSGKKR-------AAFDKSASKKKANKKPSKKKKFK 1010 (1011)
T ss_pred HHh-hhhhhhhhcCCHHHHHHHHhhhccc-ccceeEEecccccc-------ccCChhhhhcccccCccchhhcc
Confidence 988 8999999999999999998864322 55789999999877 36677777777777777777665
No 2
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=100.00 E-value=1.5e-174 Score=1539.46 Aligned_cols=750 Identities=35% Similarity=0.508 Sum_probs=659.5
Q ss_pred CeeEEEEEEeCCchhhHHHHHHHHHhhhhcCCCeEEEEeeCCc-chhhhHHHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 001672 20 RHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKL-ELSSHKKKRQKQIKKLMQRGLLDPEKVDPFQLFLET 98 (1033)
Q Consensus 20 ~~Rs~~vivGd~~~~qv~~lh~~l~~~~~~~~psvLwcyk~~l-~~ss~~kkR~~~~kk~~~~g~~~~~~~d~f~~F~~~ 98 (1033)
++|++|+++|+...+++.++|..|.....+....|+||++..+ +|.++++. ...++.+..|.+.++..|||+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~hr~m~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~-- 75 (758)
T COG1444 2 NKRSFVVLVGTAAELALSNLHRRLIQSQGRDLRRVLWLAGEALLGFASALKL--DALKRDALAGDRLPESPDPFE--G-- 75 (758)
T ss_pred CeeehHHHHHHHHHHhhhhHhHHHHHhccccHHHHHHHHHHHHhcccchhhc--cchhhhhcccccccccccccc--c--
Confidence 7899999999999999999999998777666689999999886 77777766 556677788999999999999 2
Q ss_pred CCccccchhhhhhhcccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCCchhhhhhcccccccccccccCCccc
Q 001672 99 GGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEA 178 (1033)
Q Consensus 99 ~~Ir~~~Yket~kiLG~T~~~lVlqdfe~ltPN~LartieTV~GGGlvvLLl~~~~sl~qlyt~~md~h~r~rt~~~~~v 178 (1033)
++++|+|+++++||||||+|+|||++++|+||+|||++|||+|||+||+|+|++++|++++|+.|..+.++. +.++
T Consensus 76 -~~~~~~yk~se~iLG~t~~~~VlD~~~~l~pn~lar~v~TvrgGG~lvil~p~~~~w~~~~~~~~~~~~~~~---~~~v 151 (758)
T COG1444 76 -EFEHIDYKESERILGRTFDLLVLDLTEGLDPNALARLVGTVRGGGLLVLLLPPWEEWKTLPTADSRRLSVPP---FPDV 151 (758)
T ss_pred -ccceechhHHHHHhchhhheEEEecccCCCHHHHHHHHhheecceEEEEEcCchHhccccCchhhhcccCCC---Cccc
Confidence 899999999999999999999999999999999999999999999999999999999999998777665554 4599
Q ss_pred chhHHHHHHHhhhcCCcEEEEeCCCCeeccCCCccccccCCCCCCccCchhhHhhHHHHHhhhccCCCCCcccccCCCHH
Q 001672 179 AGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQLCDDFPVGPLIKKCSTLD 258 (1033)
Q Consensus 179 ~~rF~eRFi~sL~~~~~~lv~DdelnvlP~s~~~~~i~~~~~~~~~~~~~~~~~~l~~lk~~l~~~~p~~~L~~~~~T~D 258 (1033)
++|||+||++++.+|+.|++++|..+- .+.+.|+... + ..++.++...+..+.++++.+|+|.|
T Consensus 152 t~rf~~rf~r~l~~~~~~i~i~d~~~~--------~~~~~p~~~~-~-------~~~~~~~~~~~~~~~~~l~~l~~T~d 215 (758)
T COG1444 152 TPRFNRRFIRSLSAHPDGIFIDDVDPK--------KIESGPVSAN-E-------PSKERKKPPLDPVFPRELYELCLTED 215 (758)
T ss_pred chHHHHHHHHHHhcCCCceEEEccccc--------ccccCCcccc-c-------ccccccCCCCCCCCCHHHhhhhcChh
Confidence 999999999999999999999886541 1222221100 0 00111222234445567999999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhHHHHHHHHHhhccccccccc
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEH 337 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~ 337 (1033)
|++++..|...+..+ ++++||||||||||||++||+++++...+ +.+|+||||+|+|+++||+|+.+||++|||+.+
T Consensus 216 Q~~~l~~~~~l~~~~--~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~ 293 (758)
T COG1444 216 QAEALEILERLLDAP--KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRK 293 (758)
T ss_pred HHHHHHHHHHHHcCC--CceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccc
Confidence 999998777655443 34999999999999999999997777766 689999999999999999999999999999999
Q ss_pred ccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhcC-CeEEEEecccCCC
Q 001672 338 IDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGP-YLVFLSSTVNGYE 416 (1033)
Q Consensus 338 ~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~~-y~V~lsSTI~GYE 416 (1033)
++++...+++ ...++...|+|+.|+++. .+ +||||||||||||+|+|++++++ ++|+|||||||||
T Consensus 294 v~~d~~g~~~-----------~~~~~~~~i~y~~P~~a~-~~-~DllvVDEAAaIplplL~~l~~~~~rv~~sTTIhGYE 360 (758)
T COG1444 294 VAPDALGEIR-----------EVSGDGFRIEYVPPDDAQ-EE-ADLLVVDEAAAIPLPLLHKLLRRFPRVLFSTTIHGYE 360 (758)
T ss_pred ccccccccee-----------eecCCceeEEeeCcchhc-cc-CCEEEEehhhcCChHHHHHHHhhcCceEEEeeecccc
Confidence 8888766443 234455669999999988 54 99999999999999999999988 5899999999999
Q ss_pred CCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccCCCCcHHHHHHHhccCCCCCCCCCCCCCCCCCccc
Q 001672 417 GTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECD 496 (1033)
Q Consensus 417 GTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~gDPlE~WL~~lL~LDa~~~~~~~~~~p~p~~c~ 496 (1033)
||||||++||+++|++++. ..+++++|+|||||++|||||+|||++|||||++.+....+.. ++.|.
T Consensus 361 GtGRgF~lkf~~~l~~~~~------------~~~~~~~l~ePIRya~gDPiE~wl~d~LLLdAEp~~~~~~~~~-~~~~~ 427 (758)
T COG1444 361 GTGRGFSLKFLARLRKQRD------------TTLHELELEEPIRYAPGDPIEKWLYDALLLDAEPAELEPEDLR-GSLEI 427 (758)
T ss_pred cCChHHHHHHHHHhccccc------------ceEEEEeccCCcccCCCCcHHHHHHHhhccCCCccCCCccccc-cceee
Confidence 9999999999999998763 4599999999999999999999999999999999875422211 56675
Q ss_pred eeeeCcccccccCcCcHHHHHHHHHHHHhcccCCChhHHHHhhcCCCCeEEEEecCCcccCCCCCCeEEEEEeeecCCCC
Q 001672 497 LYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQIS 576 (1033)
Q Consensus 497 l~~Vnrd~Lfs~h~~sE~fLqq~~~LlV~AHYknsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is 576 (1033)
+++..++.+| +|++|+++|||||+||||||||||++|+|||+|++|++..+. |.++||+||++||+++
T Consensus 428 ~~~~~~~~~~-----~ee~Lr~~~gllV~AHYRnsP~DL~~L~DaP~h~~~al~~~~-------~~~va~~qva~EG~l~ 495 (758)
T COG1444 428 LEVDQRDLLF-----DEELLRQVYGLLVSAHYRNSPNDLRRLLDAPHHHIFALRAPE-------GKPVAVWQVAEEGGLS 495 (758)
T ss_pred eeccHHhhhh-----CHHHHHHHHhHHhhhhccCCHHHHHHHhcCCCCeeEEEEcCC-------CceEEEEEeeccCCCc
Confidence 5544555555 599999999999999999999999999999999999999751 6899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCchhHHHHhhhcCCCCCCCcceEEEEEeeCcccccCChHHHHHHHHHHHHhccccccccccccc
Q 001672 577 RRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVED 656 (1033)
Q Consensus 577 ~~~i~~~l~~G~Rp~GdLIP~~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~ 656 (1033)
+++|. ++++|+||.||||||++++|+++++|++++|||||||||||++|+|||||++|+.+.++++
T Consensus 496 ~~~i~-~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~------------- 561 (758)
T COG1444 496 DELID-IWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVHPELQRMGIGSRLLALLIEEAR------------- 561 (758)
T ss_pred HHHHH-HHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-------------
Confidence 99998 8999999999999999999999999999999999999999999999999999999987542
Q ss_pred ccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCC
Q 001672 657 TVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTG 736 (1033)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tG 736 (1033)
+++||+|||||+|++|++||.||||+||||++++|++||
T Consensus 562 -----------------------------------------~~~DwlgvsFG~t~~L~rFW~rnGF~pVhls~~rn~~SG 600 (758)
T COG1444 562 -----------------------------------------KGLDWLGVSFGYTEELLRFWLRNGFVPVHLSPTRNASSG 600 (758)
T ss_pred -----------------------------------------cCCCEEeeccCCCHHHHHHHHHcCeEEEEecCccCcCCC
Confidence 568999999999999999999999999999999999999
Q ss_pred cceEEEEccCCccccccccccccchHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHhcCCcccCCCCCCCCCCCcccccc
Q 001672 737 EHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKS 816 (1033)
Q Consensus 737 EhS~imlk~L~~~~~~~~~~~~~~wl~~~~~dF~~rf~~lL~~~~fr~l~~~lal~lL~~~~~~~~~~~~~~~~~l~~~~ 816 (1033)
||||||||||++ .+.+|+++++++|++||+.+| ++.|++|+|++++.+|++.... ..
T Consensus 601 eys~i~lkpLs~--------~~~~~~~~a~~~f~~rl~~~l-~~~~~dl~~~~~~lll~~~~~~--------------~~ 657 (758)
T COG1444 601 EYTAIVLKPLSD--------AGKELVERANQEFRRRLLLLL-SDTYRDLEPELARLLLENATLS--------------DD 657 (758)
T ss_pred ceeEEEEecCCH--------HHHHHHHHHHHHHHHHHHHHh-hhhhhcCCHHHHhhhhhccccC--------------CC
Confidence 999999999998 888999999999999999999 9999999999999999873111 12
Q ss_pred cCCCCCHHHHHHHHHHhcCccchhhhhchHHHHHHHHhhccCC--CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHH
Q 001672 817 LTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLP--VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRI 894 (1033)
Q Consensus 817 ~~~~ls~~dl~rL~~ya~~~~dy~~i~Dllp~La~lyf~~~~~--~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~ 894 (1033)
....|+.++++|++.|++|.++|+++.|.+|.++..||....+ ..|+..++.+|++++||.|+|+++|++++++..++
T Consensus 658 ~~~~l~~~~~~rl~~y~~g~~~y~~~~d~i~~l~~~yf~~~~~~~~~L~~~~~~~Li~~~lQ~k~w~~~a~~l~~~~~~~ 737 (758)
T COG1444 658 DWPELTGFQLDRLELYASGPVLYELVADAIPLLLLAYFLDLQEDSPDLSEVEELVLIGRVLQAKPWREVAKELGLASNDV 737 (758)
T ss_pred CCcccchhHHHHHHHHhcCcccHHHHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHccCcHHHHHHHhccchHHH
Confidence 3357999999999999999999999999999999999987633 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 001672 895 FVLFRKVMTKLTDYLYEIS 913 (1033)
Q Consensus 895 ~a~~~k~v~kl~~~~~~~~ 913 (1033)
+.++.+.+++++.++.+..
T Consensus 738 ~~~l~~~~~~~~~~~~~~~ 756 (758)
T COG1444 738 MTILLKDLRKLLQEYHGLL 756 (758)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 9999999999999998653
No 3
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=100.00 E-value=8.5e-70 Score=563.38 Aligned_cols=196 Identities=50% Similarity=0.911 Sum_probs=137.6
Q ss_pred HHHHHHHhcccCCChhHHHHhhcCCCCeEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhH
Q 001672 518 RMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPW 597 (1033)
Q Consensus 518 q~~~LlV~AHYknsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIP~ 597 (1033)
|+|+|||+|||||||||||+|+|||+|+||||+.+.+ |+|+||+|||+||+|+++++++++++++||+||||||
T Consensus 1 q~f~Llv~AHYrnsPnDL~~LlDaP~h~l~~l~~~~~------p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~ 74 (196)
T PF13718_consen 1 QLFGLLVSAHYRNSPNDLQLLLDAPNHRLFVLLQPGD------PDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQ 74 (196)
T ss_dssp HHHHHHHHCSSSB-HHHHHHHHH-TTEEEEEEE-SS--------SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHH
T ss_pred CeeeeeehhhcCCCHHHHHHHhcCCcceeehhccCCC------ceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHH
Confidence 6899999999999999999999999999999997632 7999999999999999999999998889999999999
Q ss_pred HHHhhhcCCCCCCCcceEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccc
Q 001672 598 KFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEE 677 (1033)
Q Consensus 598 ~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~ 677 (1033)
+|++|+++++|++++|+|||||||||++|||||||++|+++++||+|++.+.+|.+
T Consensus 75 ~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~------------------------ 130 (196)
T PF13718_consen 75 TLAQHFGDPEFAQLSGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQD------------------------ 130 (196)
T ss_dssp HHHHHSS-TTGGGSEEEEEEEEEE-CCC-SSSHHHHHHHHHHHT------------------------------------
T ss_pred HHHHHhCCHHHHhhcceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccc------------------------
Confidence 99999999999999999999999999999999999999999999999987655431
Q ss_pred cccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcceEEEEccCC
Q 001672 678 NIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 747 (1033)
Q Consensus 678 ~i~~~~~~p~ll~~l~e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~imlk~L~ 747 (1033)
...+||||.++++++++++||+|||||+|++|++||+||||+||||++++|++||||||||+||||
T Consensus 131 ----~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k~gf~pv~l~~~~n~~SGe~S~imlr~ls 196 (196)
T PF13718_consen 131 ----KEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQKNGFVPVYLGQTRNEASGEHSAIMLRPLS 196 (196)
T ss_dssp ---------------------S-SEEEEEEE--HHHHHHHHCTT-EEEEE-SS--TTT---EEEEEEE--
T ss_pred ----cccccccccccccccccCCCEEEeccCCCHHHHHHHHHCCcEEEEEecCcccccCceeeeEEeecC
Confidence 116899999999999999999999999999999999999999999999999999999999999986
No 4
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=100.00 E-value=1.9e-59 Score=480.66 Aligned_cols=175 Identities=54% Similarity=0.826 Sum_probs=112.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcceEEEee
Q 001672 280 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINI 359 (1033)
Q Consensus 280 vLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~ 359 (1033)
||||||||||||+||+++|+++..|+.+|+||||+++|++++|+|+.++|+++||++..+.. ...+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~------------~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR------------IGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccc------------cccccc
Confidence 79999999999999999999999999999999999999999999999999999998732222 223445
Q ss_pred eeccceEEEEeCCcccccc-CCccEEEEecccCCCHHHHHHhhc-CCeEEEEecccCCCCCCcchhHHHHHHhhhcCCCC
Q 001672 360 YRQHRQTIQYMEPHEHEKL-AQVELLVIDEAAAIPLPVVRSLLG-PYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMP 437 (1033)
Q Consensus 360 ~~~h~q~Iqyi~Pd~~~~l-~~adLLvIDEAAAIPlplL~~Ll~-~y~V~lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~ 437 (1033)
++.++++|+|++||++... +++|+||||||||||+|+|++|+. +++|||||||||||||||||++||+++|+++.+
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~~~~~DlliVDEAAaIp~p~L~~ll~~~~~vv~stTi~GYEGtGRgF~lkf~~~L~~~~~-- 146 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAEKPQADLLIVDEAAAIPLPLLKQLLRRFPRVVFSTTIHGYEGTGRGFSLKFLKQLKKHRP-- 146 (177)
T ss_dssp ----CCC--B--HHHHCCT----SCEEECTGGGS-HHHHHHHHCCSSEEEEEEEBSSTTBB-HHHHHHHHCT----ST--
T ss_pred cccccceEEEECCHHHHhCcCCCCEEEEechhcCCHHHHHHHHhhCCEEEEEeeccccccCCceeeeehhhhccccCC--
Confidence 5677999999999998774 579999999999999999999995 558999999999999999999999999988763
Q ss_pred CCCcCCCccCcceeEEEeccccccCCCCcHHHHHHHhccCC
Q 001672 438 AKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLD 478 (1033)
Q Consensus 438 ~~~~~~~~~~~~~~ei~L~ePIRya~gDPlE~WL~~lL~LD 478 (1033)
+.|++++|+|||||++|||||+|||++||||
T Consensus 147 ----------~~~~~~~L~~PIR~~~~DPlE~wl~~~llLd 177 (177)
T PF05127_consen 147 ----------RNWRELELSEPIRYAPGDPLEAWLNDLLLLD 177 (177)
T ss_dssp -----------TEEEEE--S-SSS-TT-HHHHHHHHHCT--
T ss_pred ----------CccEEEEcCCCccCCCcCcHHHHHHHhhCcC
Confidence 4699999999999999999999999999998
No 5
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=99.91 E-value=3.2e-25 Score=206.06 Aligned_cols=92 Identities=34% Similarity=0.601 Sum_probs=66.1
Q ss_pred hhhhhhhcccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCCchhhhhhcccccccccccccCCcccchhHHHH
Q 001672 106 YKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNER 185 (1033)
Q Consensus 106 Yket~kiLG~T~~~lVlqdfe~ltPN~LartieTV~GGGlvvLLl~~~~sl~qlyt~~md~h~r~rt~~~~~v~~rF~eR 185 (1033)
||+++++|||||++||+|++++|+||+|||++|||+|||++|||+|++++|+++++ +.|.|+.++.+.++++||++|
T Consensus 1 yk~~~~~LG~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d---~~~~~~~~~~~~~~~~~F~~r 77 (92)
T PF08351_consen 1 YKQARQLLGQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPD---PFSRRLSVPPYTDVTPRFIRR 77 (92)
T ss_dssp -----STTT--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-B---GGGHHCC--SS-B--HHHHHH
T ss_pred CchhhhhhCCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcch---HHHhccccCCCCcccHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998876 678999999999999999999
Q ss_pred HHHhhhcCCcEEEEe
Q 001672 186 FLLSLASCRACVVMD 200 (1033)
Q Consensus 186 Fi~sL~~~~~~lv~D 200 (1033)
|+++|.+|++|+++|
T Consensus 78 f~~~L~~~~~i~i~D 92 (92)
T PF08351_consen 78 FIRSLQSDPGIIIID 92 (92)
T ss_dssp HHHHHCCSTTS----
T ss_pred HHHHHHHCcCCccCC
Confidence 999999999999987
No 6
>PF13725 tRNA_bind_2: Possible tRNA binding domain; PDB: 2ZPA_B.
Probab=99.70 E-value=1.1e-17 Score=157.31 Aligned_cols=99 Identities=27% Similarity=0.438 Sum_probs=60.1
Q ss_pred HHHHHHhhhhhccCCCCCHHHHHHhcCCcccCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhcCccchhhhhchHHH
Q 001672 769 FKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPR 848 (1033)
Q Consensus 769 F~~rf~~lL~~~~fr~l~~~lal~lL~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~dl~rL~~ya~~~~dy~~i~Dllp~ 848 (1033)
|++||+++| ++.|++|+|. ++... .+..||++|++||+.|++|.++|+.|.|+++.
T Consensus 1 F~~r~~~lL-~~~fr~L~~~----l~~~~-------------------~~~~ls~~d~~rL~~ya~g~~~y~~v~~~l~~ 56 (101)
T PF13725_consen 1 FRRRFPSLL-SDSFRDLEPE----LLKSE-------------------LDQSLSPIDLQRLERYARGGRDYESVAPALWR 56 (101)
T ss_dssp -HHHHHHHH-HHHTS--S-------S----------------------------HHHHHHHHHHHHS---TCCCHHHHHH
T ss_pred CcchHHHHh-CcHhhhCccc----ccccc-------------------ccccCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999 9999999998 32211 12468999999999999999999999977776
Q ss_pred HHHHHhhccCCCCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHH
Q 001672 849 LAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADR 893 (1033)
Q Consensus 849 La~lyf~~~~~~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q 893 (1033)
|+..|+..+ +.||..|+.+||++|||+|||++||++||++|+|
T Consensus 57 l~~~~~~~~--~~Ls~~q~~lLi~k~LQ~ksw~~~a~~l~l~g~k 99 (101)
T PF13725_consen 57 LAFQYFLSP--VSLSELQQALLIAKGLQGKSWEEVAKELGLPGRK 99 (101)
T ss_dssp HHHH------------S--HHHHHHHCS---HHHHHHHCT-SSHH
T ss_pred HHHHccccc--hhhHHHHHHHHHHHHHCCCCHHHHHHHcCCCCCC
Confidence 666666554 7899999999999999999999999999999954
No 7
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=99.47 E-value=4.2e-13 Score=160.02 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=99.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcce
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPI 354 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~-~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai 354 (1033)
++.-|+|++||||||+++|+++++++. .| .+|+||||...+++++|+++.+.|+++|-. |+|-.-
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~La~f~G-i~IlvTAH~~~ts~evF~rv~~~le~lg~~------------~~fp~~- 252 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAAMISFLE-IDIVVQAQRKTMCLTLYNRVETVVHAYQHK------------PWFPEE- 252 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHHHHHhcC-CeEEEECCChhhHHHHHHHHHHHHHHhccc------------cccCCC-
Confidence 446789999999999999999998877 45 689999999999999999999999987721 111100
Q ss_pred EEEeeeeccceEEEEeCCcccc----------------ccCCccEEEEecccCCCHHHHHHhhc-----CC-eEEEEecc
Q 001672 355 VRINIYRQHRQTIQYMEPHEHE----------------KLAQVELLVIDEAAAIPLPVVRSLLG-----PY-LVFLSSTV 412 (1033)
Q Consensus 355 ~ri~~~~~h~q~Iqyi~Pd~~~----------------~l~~adLLvIDEAAAIPlplL~~Ll~-----~y-~V~lsSTI 412 (1033)
-++...++.+..|.|..|+... +-..+|||||||||+||.+.+.+++. .- .+|+||+.
T Consensus 253 ~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 253 FKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPGALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred ceEEEeeCCeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHHHHHHHHHHHccCCCceEEEeCCC
Confidence 0111223455667777775444 22347999999999999999999883 22 46667763
Q ss_pred cCCCCCCcchhHHHHHHhhh
Q 001672 413 NGYEGTGRSLSLKLLHQLEQ 432 (1033)
Q Consensus 413 ~GYEGTGRgfsLKf~~~L~~ 432 (1033)
++-++ +=|+..|+.
T Consensus 333 -----~~~s~-tS~L~nLk~ 346 (752)
T PHA03333 333 -----DADSW-ISRVGEVKD 346 (752)
T ss_pred -----CcchH-HHHhhhhcc
Confidence 56666 456667765
No 8
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.55 E-value=6.6e-07 Score=94.25 Aligned_cols=156 Identities=22% Similarity=0.235 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 334 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy 334 (1033)
.|.+|.+|+..++. . ..+.++|+|..|.|||++|...+..+...| .+|+++||+-.++..|-+-+. .++--
T Consensus 2 L~~~Q~~a~~~~l~---~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~Aa~~L~~~~~--~~a~T- 72 (196)
T PF13604_consen 2 LNEEQREAVRAILT---S--GDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKAAKELREKTG--IEAQT- 72 (196)
T ss_dssp S-HHHHHHHHHHHH---C--TCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHHHHHHHHHHT--S-EEE-
T ss_pred CCHHHHHHHHHHHh---c--CCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHHHHHHHHhhC--cchhh-
Confidence 47899999987653 2 256899999999999999998766666677 689999999999999765531 11100
Q ss_pred cccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc---C--CeEEEE
Q 001672 335 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---P--YLVFLS 409 (1033)
Q Consensus 335 ~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~---~--y~V~ls 409 (1033)
+.+ ... .........-......++||||||.+++.+.+..|+. . -.++|.
T Consensus 73 --------i~~----------------~l~-~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilv 127 (196)
T PF13604_consen 73 --------IHS----------------FLY-RIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILV 127 (196)
T ss_dssp --------HHH----------------HTT-EECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEE
T ss_pred --------HHH----------------HHh-cCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEE
Confidence 000 000 0000000000013457899999999999999988883 2 257788
Q ss_pred ecccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccC
Q 001672 410 STVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYA 462 (1033)
Q Consensus 410 STI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya 462 (1033)
.-.+=-...|.|=. +..+.+.. . ..++|++..|-.
T Consensus 128 GD~~QL~pV~~g~~---~~~l~~~~-------------~--~~~~L~~i~Rq~ 162 (196)
T PF13604_consen 128 GDPNQLPPVGAGSP---FADLQESG-------------G--ITVELTEIRRQK 162 (196)
T ss_dssp E-TTSHHHCSTTCH---HHHHCGCS-------------T--TEEEE---SCCC
T ss_pred CCcchhcCCcCCcH---HHHHHhcC-------------C--CeEEeChhhcCC
Confidence 87765555555543 33343322 1 178999999988
No 9
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.43 E-value=3.5e-06 Score=102.36 Aligned_cols=201 Identities=18% Similarity=0.171 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CCeEEEecCChhhHHHHHHHHHhhcccc
Q 001672 257 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG----YSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1033)
Q Consensus 257 ~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g----~~nI~VTAPs~env~tlFef~~kgl~aL 332 (1033)
..|..|+..++. ++.++|||+.|.|||+++.-.++.+...+ ..+|.+|||+-.+++.|-|-+...+..+
T Consensus 148 ~~Qk~A~~~al~-------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALK-------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhh-------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 456667665443 46899999999999999988887776543 1479999999999999999887766554
Q ss_pred cccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc---CC-eEEE
Q 001672 333 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---PY-LVFL 408 (1033)
Q Consensus 333 gy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~---~y-~V~l 408 (1033)
+..+.....+ |.....|+|....+.......|. ....-..|+||||||.+|+++++.+|+. +. ++||
T Consensus 221 ~~~~~~~~~~-----~~~a~TiHrlLg~~~~~~~~~~~----~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIl 291 (586)
T TIGR01447 221 AAAEALIAAL-----PSEAVTIHRLLGIKPDTKRFRHH----ERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLIL 291 (586)
T ss_pred ccchhhhhcc-----ccccchhhhhhcccCCcchhhhc----ccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEE
Confidence 4221111110 11111222222111111111110 0112257999999999999999999985 33 5666
Q ss_pred EecccCCCCCCcchhHHHHHHhhhcCC-----CCCC--CcCCCccCccee--EEEeccccccCCCCcHHHHHHH
Q 001672 409 SSTVNGYEGTGRSLSLKLLHQLEQQSH-----MPAK--GVEGSAHGCLFK--KIELSESIRYAPGDPIESWLNG 473 (1033)
Q Consensus 409 sSTI~GYEGTGRgfsLKf~~~L~~~~~-----~~~~--~~~~~~~~~~~~--ei~L~ePIRya~gDPlE~WL~~ 473 (1033)
..-.+=----|-|--++=+-+...... .... ..........+. -++|++.-|.+.+-.|-..-+.
T Consensus 292 vGD~~QLpsV~~G~vl~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~~~R~~~~S~I~~lA~~ 365 (586)
T TIGR01447 292 LGDKNQLPSVEAGAVLGDLCELASIGYLFQSAQAYALCKKINSKTRNPLSDNVCFLKTSHRFGKDSGIGQLAKA 365 (586)
T ss_pred ECChhhCCCCCCChhHHHHHHhhccccchhhhhhhcccccccccccCCCCCcEEEeceeecCCCCccHHHHHHH
Confidence 544433333333322222211111000 0000 000000011244 7899999999988776654443
No 10
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.40 E-value=7.7e-07 Score=108.37 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CCeEEEecCChhhHHHHHHHHHhhcccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---YSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g---~~nI~VTAPs~env~tlFef~~kgl~aL 332 (1033)
+..|..|+...+. ++.++|||+.|.|||+++--.++.++..+ ..+|.++||+-.+++.|-|-+...+..+
T Consensus 154 ~d~Qk~Av~~a~~-------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~ 226 (615)
T PRK10875 154 VDWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQL 226 (615)
T ss_pred CHHHHHHHHHHhc-------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcc
Confidence 5678888764432 56899999999999999988888776642 3579999999999999999887777666
Q ss_pred cccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc---CC-eEEE
Q 001672 333 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---PY-LVFL 408 (1033)
Q Consensus 333 gy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~---~y-~V~l 408 (1033)
+..+..... -|.....|+|....+.......|-... .-.+|+||||||.+|.++++..|+. +. ++||
T Consensus 227 ~~~~~~~~~-----~~~~a~TiHrlLg~~~~~~~~~~~~~~----~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIl 297 (615)
T PRK10875 227 PLTDEQKKR-----IPEEASTLHRLLGAQPGSQRLRYHAGN----PLHLDVLVVDEASMVDLPMMARLIDALPPHARVIF 297 (615)
T ss_pred ccchhhhhc-----CCCchHHHHHHhCcCCCccchhhcccc----CCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEE
Confidence 543221111 111122333333222222222222111 1247999999999999999999984 23 5666
Q ss_pred EecccCCCCCCcc-------------hhHHHHHHhhhcCCCCCCCcCCCccCcce--eEEEeccccccCCCCcHHHHHHH
Q 001672 409 SSTVNGYEGTGRS-------------LSLKLLHQLEQQSHMPAKGVEGSAHGCLF--KKIELSESIRYAPGDPIESWLNG 473 (1033)
Q Consensus 409 sSTI~GYEGTGRg-------------fsLKf~~~L~~~~~~~~~~~~~~~~~~~~--~ei~L~ePIRya~gDPlE~WL~~ 473 (1033)
..-.+=----|-| |+-+..++|.+........... ...+.+ .-+.|++.-|++.+-.|-..-+.
T Consensus 298 vGD~~QL~sV~~G~VL~DL~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~Rf~~~SgI~~lA~~ 376 (615)
T PRK10875 298 LGDRDQLASVEAGAVLGDICRFAEAGYSAERAQQLSRLTGCHLPAGTG-TEAASVRDSLCLLRKSYRFGSDSGIGQLAAA 376 (615)
T ss_pred ecchhhcCCCCCCchHHHHHHhhhcccchhhhhHHhhhcccccccccc-ccCCccccceeecceeecCCCCCcHHHHHHH
Confidence 4443333322222 4444445554332110000000 000111 13579999999988877766555
Q ss_pred h
Q 001672 474 L 474 (1033)
Q Consensus 474 l 474 (1033)
+
T Consensus 377 I 377 (615)
T PRK10875 377 V 377 (615)
T ss_pred H
Confidence 5
No 11
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.34 E-value=6.4e-06 Score=77.38 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=67.5
Q ss_pred CChhHHHHhhcCCCCeEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHhhhcCCCCC
Q 001672 530 NSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFP 609 (1033)
Q Consensus 530 nsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIP~~ls~q~~d~~f~ 609 (1033)
.+++++..+.+.+.+.+||+.. + .+|+|.+.+..
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~~-------------------------------------- 63 (117)
T PF13673_consen 30 YSPEDLEEYLEEGSHTIFVAEE-----G---GEIVGFAWLEP-------------------------------------- 63 (117)
T ss_dssp SSHHHHHHHHCTCCCEEEEEEE-----T---TEEEEEEEEET--------------------------------------
T ss_pred cCHHHHHHHHHhcCCEEEEEEE-----C---CEEEEEEEEcC--------------------------------------
Confidence 6799999999999999999863 1 36888876420
Q ss_pred CCcceEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccc
Q 001672 610 SLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLL 689 (1033)
Q Consensus 610 ~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll 689 (1033)
..+|..+.|+|+|||+|+|+++++.+.+.+.
T Consensus 64 ---~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~---------------------------------------------- 94 (117)
T PF13673_consen 64 ---DGEISHLYVLPEYRGRGIGRALLDAAEKEAK---------------------------------------------- 94 (117)
T ss_dssp ---CEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT----------------------------------------------
T ss_pred ---CCeEEEEEEChhhcCCcHHHHHHHHHHHHHH----------------------------------------------
Confidence 1127889999999999999999999887542
Q ss_pred ccccccCCCCcceEEEecCCCHHHHHHHHHCCC
Q 001672 690 VHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKF 722 (1033)
Q Consensus 690 ~~l~e~~~~~~dylGvSFG~T~~Ll~FW~k~gF 722 (1033)
. ++.++.+. .+....+||++.||
T Consensus 95 -------~-~~~~l~~~--~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 95 -------D-GIRRLTVE--ANERARRFYRKLGF 117 (117)
T ss_dssp -------T-TCEEEEEE--C-HHHHHHHHHTT-
T ss_pred -------c-CCcEEEEE--eCHHHHHHHHhCCC
Confidence 1 45677777 78999999999998
No 12
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.28 E-value=1.2e-05 Score=99.95 Aligned_cols=171 Identities=25% Similarity=0.282 Sum_probs=109.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhHHHHHHHHHhhccc
Q 001672 253 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1033)
Q Consensus 253 ~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env~tlFef~~kgl~a 331 (1033)
...+.+|.+|+..+.. ++.++|||+.|.|||+++...+..+-..| ..+|+++||+..+++.|-+-. |.++
T Consensus 322 ~~l~~~Q~~Ai~~~~~-------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~--g~~a 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ-------HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT--GLTA 392 (720)
T ss_pred CCCCHHHHHHHHHHHh-------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc--CCcc
Confidence 3468899999876532 45899999999999999987766666555 358999999999998775431 2111
Q ss_pred ccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc---CC-eEE
Q 001672 332 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---PY-LVF 407 (1033)
Q Consensus 332 Lgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~---~y-~V~ 407 (1033)
. .|.+.--..... ...........+|+||||||.++..+++..|+. +. .++
T Consensus 393 ~--------------------Tih~lL~~~~~~-----~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 393 S--------------------TIHRLLGYGPDT-----FRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAALPDHARLL 447 (720)
T ss_pred c--------------------cHHHHhhccCCc-----cchhhhhccccCCEEEEeccccCCHHHHHHHHHhCCCCCEEE
Confidence 0 000000000000 000001112358999999999999999999985 22 577
Q ss_pred EEecccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccCCCCcHHHHHHHh
Q 001672 408 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGL 474 (1033)
Q Consensus 408 lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~gDPlE~WL~~l 474 (1033)
|..-.+=----|.|-.++ .|-.. ..+..++|++..|.+.+.++=...+.+
T Consensus 448 lvGD~~QLpsV~~G~v~~---dl~~~--------------~~~~~~~L~~i~RQ~~~s~i~~~a~~i 497 (720)
T TIGR01448 448 LVGDTDQLPSVGPGQVLK---DLILS--------------QAIPVTRLTKVYRQAAGSPIITLAHGI 497 (720)
T ss_pred EECccccccCCCCCchHH---HHHhc--------------CCCCEEEeCeeeccCCCcHHHHHHHHH
Confidence 766555444444443322 22111 124578999999999998887766665
No 13
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.25 E-value=4.5e-06 Score=74.40 Aligned_cols=30 Identities=27% Similarity=0.177 Sum_probs=26.5
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHH
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYY 642 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~ 642 (1033)
.+.|.++||||+|||+|||+++|+.+.+.+
T Consensus 26 ~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~ 55 (79)
T PF13508_consen 26 FAYIGYLAVDPEYRGKGIGSKLLNYLLEKA 55 (79)
T ss_dssp EEEEEEEEE-GGGTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHHHHHc
Confidence 459999999999999999999999998766
No 14
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.05 E-value=8.8e-05 Score=70.33 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=54.2
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 693 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~ 693 (1033)
..|..++|+|+|||+|||+.+++.+.+++.....
T Consensus 55 ~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~---------------------------------------------- 88 (131)
T TIGR01575 55 AHILNIAVKPEYQGQGIGRALLRELIDEAKGRGV---------------------------------------------- 88 (131)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCC----------------------------------------------
Confidence 3588999999999999999999999887642110
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcceEEE
Q 001672 694 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMV 742 (1033)
Q Consensus 694 e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~im 742 (1033)
.. =++.+. -.+....+||+|+||.++..........+++.++|
T Consensus 89 ----~~-i~~~~~-~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~ 131 (131)
T TIGR01575 89 ----NE-IFLEVR-VSNIAAQALYKKLGFNEIAIRRNYYPDPGEDAIVM 131 (131)
T ss_pred ----Ce-EEEEEe-cccHHHHHHHHHcCCCccccccccccCCCcccccC
Confidence 00 122221 22567899999999999987665543333777776
No 15
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.97 E-value=5.4e-05 Score=75.80 Aligned_cols=147 Identities=23% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
.+..|.+++..+.+.. ..++++++.|.|||.++-.++...+..+ ..+++|++|+...+..++..+..-+....
T Consensus 9 ~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 9 LRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 3678999887654311 5789999999999997777766666543 56799999999998888887766553321
Q ss_pred ccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCcccc--------ccCCccEEEEecccCCCH----HHHHHhh
Q 001672 334 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIPL----PVVRSLL 401 (1033)
Q Consensus 334 y~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~--------~l~~adLLvIDEAAAIPl----plL~~Ll 401 (1033)
... ..+..+..+ ...+.+ .......+.+..|+.+. .....+++|||||-.++- ..+..++
T Consensus 83 ~~~---~~~~~~~~~--~~~~~~---~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 83 LKV---VGLYGGDSK--REQLRK---LESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred eEE---EEEeCCcch--HHHHHH---HhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 000 000000000 000000 00001134445544322 123478999999999885 5555555
Q ss_pred c-----CCeEEEEecccCC
Q 001672 402 G-----PYLVFLSSTVNGY 415 (1033)
Q Consensus 402 ~-----~y~V~lsSTI~GY 415 (1033)
. ...+++|+|....
T Consensus 155 ~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 155 KLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HhCCccceEEEEecCCchh
Confidence 3 3467888887543
No 16
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.96 E-value=9e-05 Score=94.53 Aligned_cols=153 Identities=24% Similarity=0.257 Sum_probs=102.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccc
Q 001672 253 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1033)
Q Consensus 253 ~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aL 332 (1033)
...|.+|..||..++ .+ +..++|||.-|.|||++|+.+...+-+.|+ +|+++||+-.+++.|-+- .|..+-
T Consensus 345 ~~Ls~eQr~Av~~il----~s--~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~-~V~~~ApTGkAA~~L~e~--tGi~a~ 415 (988)
T PRK13889 345 LVLSGEQADALAHVT----DG--RDLGVVVGYAGTGKSAMLGVAREAWEAAGY-EVRGAALSGIAAENLEGG--SGIASR 415 (988)
T ss_pred CCCCHHHHHHHHHHh----cC--CCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEecCcHHHHHHHhhc--cCcchh
Confidence 357899999987553 21 347889999999999999987776666786 799999999999887531 121110
Q ss_pred cccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc---C--CeEE
Q 001672 333 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---P--YLVF 407 (1033)
Q Consensus 333 gy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~---~--y~V~ 407 (1033)
.|.+ +- + .| .+. -..+...+|||||||.+++..++..|+. + ..|+
T Consensus 416 --------------------TI~s---ll-~----~~-~~~-~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvV 465 (988)
T PRK13889 416 --------------------TIAS---LE-H----GW-GQG-RDLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVV 465 (988)
T ss_pred --------------------hHHH---HH-h----hh-ccc-ccccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEE
Confidence 0000 00 0 00 000 0123467999999999999999999984 1 2678
Q ss_pred EEecccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccCC
Q 001672 408 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAP 463 (1033)
Q Consensus 408 lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~ 463 (1033)
|..-..=--..|.|-.++.+.. .. ..++|++-.|-..
T Consensus 466 LVGD~~QLpsV~aG~~f~~L~~---~~----------------~~a~LteI~RQ~~ 502 (988)
T PRK13889 466 LVGDPQQLQAIEAGAAFRSIHE---RH----------------GGAEIGEVRRQRE 502 (988)
T ss_pred EECCHHHcCCCCCCchHHHHHH---hc----------------CeEEeceeecCCC
Confidence 8777666666677766665532 12 2478999999874
No 17
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.89 E-value=0.00011 Score=91.89 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=101.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccc
Q 001672 253 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1033)
Q Consensus 253 ~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aL 332 (1033)
...|.+|..|+..++. . .+.++|||.-|.|||+++.-.+..+-..|+ +|.++||+-.+++.|-+- .|.++.
T Consensus 351 ~~Ls~~Q~~Av~~i~~----s--~~~~il~G~aGTGKTtll~~i~~~~~~~g~-~V~~~ApTg~Aa~~L~~~--~g~~a~ 421 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG----S--GDIAVVVGRAGTGKSTMLKAAREAWEAAGY-RVIGAALSGKAAEGLQAE--SGIESR 421 (744)
T ss_pred CCCCHHHHHHHHHHhc----C--CCEEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEeCcHHHHHHHHhc--cCCcee
Confidence 3468999999876532 1 358899999999999999987776666775 799999999999887532 122110
Q ss_pred cccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc----C-CeEE
Q 001672 333 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----P-YLVF 407 (1033)
Q Consensus 333 gy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~----~-y~V~ 407 (1033)
.|.+ -...| ......+..+||||||||.+++...+..|+. + -.|+
T Consensus 422 --------------------Ti~~--------~~~~~--~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kli 471 (744)
T TIGR02768 422 --------------------TLAS--------LEYAW--ANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVV 471 (744)
T ss_pred --------------------eHHH--------HHhhh--ccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEE
Confidence 0000 00001 0111123468999999999999999999985 1 2577
Q ss_pred EEecccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccCC
Q 001672 408 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAP 463 (1033)
Q Consensus 408 lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~ 463 (1033)
|..-.+=----|.|-.++.+. +. +..++|++-.|...
T Consensus 472 LVGD~~QLpsVgaG~~f~~l~---~~----------------~~~~~Lt~I~RQ~~ 508 (744)
T TIGR02768 472 LVGDPEQLQPIEAGAAFRAIA---ER----------------IGYAELETIRRQRE 508 (744)
T ss_pred EECChHHccccccCcHHHHHH---Hh----------------hCeEEeeeEEecCC
Confidence 776655555555555444433 21 22478999999874
No 18
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.88 E-value=0.00015 Score=93.21 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=107.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccc
Q 001672 253 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1033)
Q Consensus 253 ~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aL 332 (1033)
...|.+|..||..+. . ..+.++|+|.-|.|||++|+.++..+-+.|+ +|+..||+-.+++.|-+.. |+++-
T Consensus 380 ~~Ls~eQ~~Av~~i~----~--~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~-~V~g~ApTgkAA~~L~e~~--Gi~a~ 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA----G--PARIAAVVGRAGAGKTTMMKAAREAWEAAGY-RVVGGALAGKAAEGLEKEA--GIQSR 450 (1102)
T ss_pred CCCCHHHHHHHHHHh----c--cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEcCcHHHHHHHHHhh--CCCee
Confidence 357999999987542 1 2568999999999999999988877777786 8999999999999885432 22210
Q ss_pred cccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc-----CCeEE
Q 001672 333 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----PYLVF 407 (1033)
Q Consensus 333 gy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~-----~y~V~ 407 (1033)
| | |+.-..|-.+. ..+...++||||||.+++.+.+..|+. ...|+
T Consensus 451 -------------T-------I--------as~ll~~~~~~--~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 451 -------------T-------L--------SSWELRWNQGR--DQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLV 500 (1102)
T ss_pred -------------e-------H--------HHHHhhhccCc--cCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEE
Confidence 0 0 00000110111 123457899999999999999999884 13688
Q ss_pred EEecccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccCC
Q 001672 408 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAP 463 (1033)
Q Consensus 408 lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~ 463 (1033)
|..-..=-...|.|-.++.+.. . +..++|++..|-..
T Consensus 501 LVGD~~QL~~V~aG~~f~~l~~---~----------------i~~a~LteI~RQ~~ 537 (1102)
T PRK13826 501 LVGDPEQLQPIEAGAAFRAIAD---R----------------IGYAELETIYRQRE 537 (1102)
T ss_pred EECCHHHcCCCCCCcHHHHHHh---h----------------cCEEEeeeeeecCC
Confidence 8888877777777776666653 1 22588999999874
No 19
>PTZ00330 acetyltransferase; Provisional
Probab=97.81 E-value=0.00018 Score=70.37 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=27.6
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.+-|..+.|||+|||+|||+++++.+.++..
T Consensus 82 ~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~ 112 (147)
T PTZ00330 82 VGHIEDVVVDPSYRGQGLGRALISDLCEIAR 112 (147)
T ss_pred eEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999999998764
No 20
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=97.79 E-value=0.00022 Score=86.56 Aligned_cols=129 Identities=27% Similarity=0.309 Sum_probs=89.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcc
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKP 353 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~--g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~a 353 (1033)
++.-|...+|=-|||..++..++.++.. | .+|++|||.....+.+|+-+...++.-.+...+ +.+. ...
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~G-i~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v--~~vk------Ge~ 324 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRG-IKIGYTAHIRKATEPVFEEIGARLRQWFGASRV--DHVK------GET 324 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCC-CEEEEEcCcHHHHHHHHHHHHHHHhhhcchhhe--eeec------CcE
Confidence 4466889999999999999666655533 5 689999999999999999998877744322221 2221 112
Q ss_pred eEEEeeee-ccceEEEEeCCcc--ccccCCccEEEEecccCCCHHHHHHhhc------CCeEEEEecccCC
Q 001672 354 IVRINIYR-QHRQTIQYMEPHE--HEKLAQVELLVIDEAAAIPLPVVRSLLG------PYLVFLSSTVNGY 415 (1033)
Q Consensus 354 i~ri~~~~-~h~q~Iqyi~Pd~--~~~l~~adLLvIDEAAAIPlplL~~Ll~------~y~V~lsSTI~GY 415 (1033)
| +-.|+ +.+.+|+|.+-.. ..+-...||||||||+=|+-..+..+++ +-.+|+|||..|=
T Consensus 325 I--~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns~~ 393 (738)
T PHA03368 325 I--SFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNTGK 393 (738)
T ss_pred E--EEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCCCc
Confidence 3 22344 3346999973322 2232358999999999999999999983 3367888887663
No 21
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.72 E-value=3e-05 Score=78.16 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=59.0
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHhcccc--cccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccc
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLT--TFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLV 690 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~ 690 (1033)
-..|..|||||+|||+|+|+++|+.+.+.+..... .+.
T Consensus 91 ~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~---------------------------------------- 130 (177)
T COG0456 91 EGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIV---------------------------------------- 130 (177)
T ss_pred ccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEE----------------------------------------
Confidence 46899999999999999999999998877653321 000
Q ss_pred cccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcceEEEEccCC
Q 001672 691 HLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 747 (1033)
Q Consensus 691 ~l~e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~imlk~L~ 747 (1033)
| +.+.. +...+.||+|.||..+..+..+....++...+|++.+.
T Consensus 131 -L-~V~~~-----------N~~Ai~lY~~~GF~~~~~~~~yy~~~~~~a~~~~~~~~ 174 (177)
T COG0456 131 -L-EVRES-----------NEAAIGLYRKLGFEVVKIRKNYYADGNGDALLMLKMLN 174 (177)
T ss_pred -E-EEecC-----------ChHHHHHHHHcCCEEEeeehhhccCCcchhHHHHHhhh
Confidence 0 11111 45889999999999999999876655444666665543
No 22
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=97.69 E-value=9.8e-05 Score=65.21 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=30.1
Q ss_pred CcceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 611 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 611 l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
...+-|.+++|+|+|||+|+|+++++.++++..
T Consensus 23 ~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~ 55 (83)
T PF00583_consen 23 GNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWAR 55 (83)
T ss_dssp TTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHH
Confidence 467899999999999999999999999988765
No 23
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=97.65 E-value=6e-05 Score=73.58 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=26.9
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+.|.+|+|||+|||+|||+.+++.+.++..
T Consensus 77 ~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~ 106 (144)
T PRK10146 77 GEIQELVVMPQARGLNVGSKLLAWAEEEAR 106 (144)
T ss_pred heeheeEECHHHcCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999988754
No 24
>PRK10314 putative acyltransferase; Provisional
Probab=97.65 E-value=5.2e-05 Score=76.91 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=27.9
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.+.|-||||+|+|||+|+|+++|+.+.+++.
T Consensus 74 ~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~ 104 (153)
T PRK10314 74 PVVIGRVIVSEALRGEKVGQQLMSKTLESCT 104 (153)
T ss_pred CEEEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 4699999999999999999999998887654
No 25
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.64 E-value=0.0014 Score=81.00 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHh
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 327 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~k 327 (1033)
..+..|.+||..++. .+..++|.|+.|.|||+++--.+..++..|+ +|+|||||..++..+.+-+..
T Consensus 157 ~ln~~Q~~Av~~~l~------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALS------SKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhc------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHh
Confidence 457899999975432 1357889999999999998777777888886 899999999999999998775
No 26
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=97.59 E-value=0.00036 Score=68.89 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.9
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 615 RIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 615 RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.+..|+|+|+|||+|||+++++.+.+++.
T Consensus 65 ~~~~i~v~~~~rg~G~g~~ll~~~~~~~~ 93 (146)
T PRK09491 65 TLFNIAVDPDYQRQGLGRALLEHLIDELE 93 (146)
T ss_pred EEEEEEECHHHccCCHHHHHHHHHHHHHH
Confidence 57789999999999999999999988653
No 27
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.55 E-value=0.00046 Score=94.03 Aligned_cols=151 Identities=17% Similarity=0.245 Sum_probs=102.3
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccc
Q 001672 252 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1033)
Q Consensus 252 ~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~a 331 (1033)
....+.+|.+||..++. . ..+..+|+|..|.|||+++.-.+..+-+.|+ +|.+.||+-.+.+.|-+-+ |.++
T Consensus 427 ~~~Ls~~Q~~Av~~il~---s--~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~-~V~~lAPTgrAA~~L~e~~--g~~A 498 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFT---S--TKRFIIINGFGGTGSTEIAQLLLHLASEQGY-EIQIITAGSLSAQELRQKI--PRLA 498 (1960)
T ss_pred cCCCCHHHHHHHHHHHh---C--CCCeEEEEECCCCCHHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHh--cchh
Confidence 45678999999986643 2 2569999999999999999988877777785 7999999999999987653 2211
Q ss_pred ccccccccccccccCCCCCCcceEEEeeeeccceEEE-EeCCccccccCCccEEEEecccCCCHHHHHHhhc---C--Ce
Q 001672 332 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQ-YMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---P--YL 405 (1033)
Q Consensus 332 Lgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iq-yi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~---~--y~ 405 (1033)
--....+. .. ..++ ...|++ |...+ ..+...|+||||||.++....+..|+. + -.
T Consensus 499 ~Ti~~~l~-~l---~~~~-------------~~~tv~~fl~~~--~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 499 STFITWVK-NL---FNDD-------------QDHTVQGLLDKS--SPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSK 559 (1960)
T ss_pred hhHHHHHH-hh---cccc-------------cchhHHHhhccc--CCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCE
Confidence 00000000 00 0000 001111 22111 123468999999999999999999994 1 26
Q ss_pred EEEEecccCCCCCCcchhHHHHHH
Q 001672 406 VFLSSTVNGYEGTGRSLSLKLLHQ 429 (1033)
Q Consensus 406 V~lsSTI~GYEGTGRgfsLKf~~~ 429 (1033)
|+|-.-.+.--+-|.|=.|+.++.
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~ 583 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKE 583 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHH
Confidence 888999999999777766665553
No 28
>PRK03624 putative acetyltransferase; Provisional
Probab=97.51 E-value=0.0014 Score=62.78 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=25.7
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 615 RIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 615 RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.|..|+|+|+|||+|||+.+|+.+.+++.
T Consensus 70 ~i~~i~v~p~~rg~Gig~~ll~~~~~~~~ 98 (140)
T PRK03624 70 WAYYLAVHPDFRGRGIGRALVARLEKKLI 98 (140)
T ss_pred eEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 36678999999999999999999988764
No 29
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.51 E-value=0.0014 Score=79.61 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhccc-CCChhHHHHhhcCCCCeEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCC
Q 001672 515 FLQRMMALYVSSHY-KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGD 593 (1033)
Q Consensus 515 fLqq~~~LlV~AHY-knsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~Gd 593 (1033)
=+..+..||..+++ ..++..+......|+...||+... .+ ++|+|++....... .
T Consensus 93 D~~~I~~L~~~~~~~p~~~~~~~~~~~~~~~~~~vA~~~---~~---g~IVG~~~~~~~~~---------------~--- 148 (547)
T TIGR03103 93 DVDAINRLYAARGMVPVRVDFVLDHRHSRAITYLVAEDE---AS---GAIIGTVMGVDHRK---------------A--- 148 (547)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHhcCCCceEEEEEEC---CC---CeEEEEEEEEeccc---------------c---
Confidence 36777888888765 445666665666777777877521 11 36888875421110 0
Q ss_pred chhHHHHhhhcCCCCCCCcceEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhh
Q 001672 594 QIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVS 673 (1033)
Q Consensus 594 LIP~~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 673 (1033)
+.+.. .+..|.+|+|||+|||+|||+.+++.+.+++...
T Consensus 149 ---------~~d~~----~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~---------------------------- 187 (547)
T TIGR03103 149 ---------FNDPE----HGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSR---------------------------- 187 (547)
T ss_pred ---------ccCCC----CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC----------------------------
Confidence 11111 2457889999999999999999999999876522
Q ss_pred cccccccCCCCCCcccccccccCCCCcceEEEe-cCCCHHHHHHHHHCCCeEEEeeecccCCCCcceEEEEcc
Q 001672 674 LLEENIKPKTNLPPLLVHLRERQPEKLNYIGVS-FGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKP 745 (1033)
Q Consensus 674 l~~~~i~~~~~~p~ll~~l~e~~~~~~dylGvS-FG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~imlk~ 745 (1033)
++.++-.+ ..-+...++||+|.||..+-.-...+..+. +-++++-|
T Consensus 188 -------------------------G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~~d~~~~-~~~~~~g~ 234 (547)
T TIGR03103 188 -------------------------GCAYMDLSVMHDNEQAIALYEKLGFRRIPVFALKRKNAI-NERLFSGP 234 (547)
T ss_pred -------------------------CCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEEeccCCc-CcccccCC
Confidence 23333332 345688999999999988755554444333 33344433
No 30
>PHA02533 17 large terminase protein; Provisional
Probab=97.44 E-value=0.0023 Score=77.54 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHH-HHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALG-LAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 334 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLG-laiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy 334 (1033)
..-|...+..+ . .++..++..+|.-|||+++. +++..++..+..+|+++||+.+.++.+|+-+...++.+..
T Consensus 61 ~p~Q~~i~~~~----~---~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 61 RDYQKDMLKIM----H---KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred cHHHHHHHHHH----h---cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 45677755433 1 14456799999999999987 4555565555569999999999999999888755543310
Q ss_pred cccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccc-cccCCccEEEEecccCCCHH--H---HHHhh--cC-Ce
Q 001672 335 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH-EKLAQVELLVIDEAAAIPLP--V---VRSLL--GP-YL 405 (1033)
Q Consensus 335 ~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~-~~l~~adLLvIDEAAAIPlp--l---L~~Ll--~~-y~ 405 (1033)
.....++.. ++. .| .-..+.+|++.+-+.- ..-...++++|||+|.+|-+ + +...+ |. ..
T Consensus 134 --l~~~~i~~~-----~~~--~I--~l~NGS~I~~lss~~~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~lasg~~~r 202 (534)
T PHA02533 134 --FLQPGIVEW-----NKG--SI--ELENGSKIGAYASSPDAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVISSGRSSK 202 (534)
T ss_pred --Hhhcceeec-----Ccc--EE--EeCCCCEEEEEeCCCCccCCCCCceEEEeccccCCCHHHHHHHHHHHHHcCCCce
Confidence 011111111 011 11 1235678888765421 22235789999999999973 2 22222 22 35
Q ss_pred EEEEecccCCCC
Q 001672 406 VFLSSTVNGYEG 417 (1033)
Q Consensus 406 V~lsSTI~GYEG 417 (1033)
+++.||-+|..+
T Consensus 203 ~iiiSTp~G~n~ 214 (534)
T PHA02533 203 IIITSTPNGLNH 214 (534)
T ss_pred EEEEECCCchhh
Confidence 777788788855
No 31
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.44 E-value=0.0025 Score=70.31 Aligned_cols=81 Identities=12% Similarity=0.082 Sum_probs=55.2
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 692 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l 692 (1033)
.+.|..|+|||+|||+|||+++|+.+.+++.....
T Consensus 183 ~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~--------------------------------------------- 217 (266)
T TIGR03827 183 NAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGI--------------------------------------------- 217 (266)
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCC---------------------------------------------
Confidence 36789999999999999999999999887642210
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCc--ceEEEEcc
Q 001672 693 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKP 745 (1033)
Q Consensus 693 ~e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGE--hS~imlk~ 745 (1033)
..+ |+- ....+....+||+|+||.........-...|. ..-|+.|+
T Consensus 218 -----~~l-~~~-~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k~ 265 (266)
T TIGR03827 218 -----RTA-YTI-ARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYKQ 265 (266)
T ss_pred -----cEE-Eee-hhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeeec
Confidence 000 111 12224567889999999988777666666774 33444444
No 32
>PRK13688 hypothetical protein; Provisional
Probab=97.43 E-value=0.00026 Score=72.51 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=24.0
Q ss_pred cceEEEEEeeCcccccCChHHHHHHHH
Q 001672 612 SGARIVRIATHPSAMRLGYGSTAVELL 638 (1033)
Q Consensus 612 ~g~RIVRIAvhPd~q~~GyGsraL~~L 638 (1033)
..++|.||+|+|+|||+|||+++++.+
T Consensus 78 ~~~~L~~l~V~p~~rgkGiG~~Ll~~a 104 (156)
T PRK13688 78 DYLELWKLEVLPKYQNRGYGEMLVDFA 104 (156)
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHH
Confidence 447999999999999999999998754
No 33
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=97.37 E-value=0.001 Score=78.32 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=27.1
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+.|.+|+|+|+|||+|+|+++++.++++..
T Consensus 348 ~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~ 377 (429)
T TIGR01890 348 GEMACLAVSPEYQDGGRGERLLAHIEDRAR 377 (429)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999999988764
No 34
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.36 E-value=0.0012 Score=83.48 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=84.4
Q ss_pred HHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccc-ccccccccccc
Q 001672 264 ITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA-IEYKEHIDYDI 342 (1033)
Q Consensus 264 ~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~a-Lgy~e~~dy~i 342 (1033)
..+++++.. +..++++|+.|.|||+++.+++-..... ..+|+||.|+.+.+.++.+.+.+.+.. +| ..+.|.+
T Consensus 8 ~~i~~~l~~---~~~vIi~a~TGSGKTT~vpl~lL~~~~~-~~~ilvlqPrR~aA~qiA~rva~~~~~~~g--~~VGy~v 81 (819)
T TIGR01970 8 PALRDALAA---HPQVVLEAPPGAGKSTAVPLALLDAPGI-GGKIIMLEPRRLAARSAAQRLASQLGEAVG--QTVGYRV 81 (819)
T ss_pred HHHHHHHHc---CCcEEEECCCCCCHHHHHHHHHHHhhcc-CCeEEEEeCcHHHHHHHHHHHHHHhCCCcC--cEEEEEE
Confidence 345666644 4589999999999999999987765432 358999999999999999987655431 11 1122222
Q ss_pred cccCCCCCCcceEEEeeeeccceEEEEeCCcccc-------ccCCccEEEEecccC--CC----HHHHHHhh---cCC--
Q 001672 343 VRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA--IP----LPVVRSLL---GPY-- 404 (1033)
Q Consensus 343 ~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~-------~l~~adLLvIDEAAA--IP----lplL~~Ll---~~y-- 404 (1033)
-... ....+..|.|+.|.-+. .+...++||||||=- +- +.+++.+. .+.
T Consensus 82 r~~~-------------~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 82 RGEN-------------KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLK 148 (819)
T ss_pred cccc-------------ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCce
Confidence 1100 00122346666665432 245689999999984 33 33455543 222
Q ss_pred eEEEEecccC
Q 001672 405 LVFLSSTVNG 414 (1033)
Q Consensus 405 ~V~lsSTI~G 414 (1033)
.|+||.|+..
T Consensus 149 lIlmSATl~~ 158 (819)
T TIGR01970 149 ILAMSATLDG 158 (819)
T ss_pred EEEEeCCCCH
Confidence 5889999875
No 35
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.0013 Score=82.87 Aligned_cols=136 Identities=21% Similarity=0.275 Sum_probs=98.6
Q ss_pred HHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccc-----cccccccc
Q 001672 265 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA-----IEYKEHID 339 (1033)
Q Consensus 265 ~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~a-----Lgy~e~~d 339 (1033)
++++++.. ...++|.|+.|+||||.+=..+-..-..+.+.|.+|=|..-++..+-+.+...|+. .||+- .
T Consensus 57 ~i~~ai~~---~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i--R 131 (845)
T COG1643 57 EILKAIEQ---NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI--R 131 (845)
T ss_pred HHHHHHHh---CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE--E
Confidence 44555544 45899999999999999988777665545578999999999999999999888876 34432 2
Q ss_pred ccccccCCCCCCcceEEEeeeeccceEEEEeCCcccc-------ccCCccEEEEecc------cCCCHHHHHHhhc--C-
Q 001672 340 YDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEA------AAIPLPVVRSLLG--P- 403 (1033)
Q Consensus 340 y~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~-------~l~~adLLvIDEA------AAIPlplL~~Ll~--~- 403 (1033)
|+ -..+.+-.|.|+..--+. .+...+.+||||| +.|=+-+++.++. +
T Consensus 132 fe-----------------~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~ 194 (845)
T COG1643 132 FE-----------------SKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD 194 (845)
T ss_pred ee-----------------ccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC
Confidence 22 112334567787765442 2567999999998 6778888888773 3
Q ss_pred -C-eEEEEecccCCCCCCcchhHHHHHHhh
Q 001672 404 -Y-LVFLSSTVNGYEGTGRSLSLKLLHQLE 431 (1033)
Q Consensus 404 -y-~V~lsSTI~GYEGTGRgfsLKf~~~L~ 431 (1033)
- +++||-|+++ =||-+.+.
T Consensus 195 DLKiIimSATld~---------~rfs~~f~ 215 (845)
T COG1643 195 DLKLIIMSATLDA---------ERFSAYFG 215 (845)
T ss_pred CceEEEEecccCH---------HHHHHHcC
Confidence 2 4789999986 46666664
No 36
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.28 E-value=0.0018 Score=82.04 Aligned_cols=132 Identities=19% Similarity=0.248 Sum_probs=81.9
Q ss_pred HHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccc-ccccccccccc
Q 001672 264 ITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA-IEYKEHIDYDI 342 (1033)
Q Consensus 264 ~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~a-Lgy~e~~dy~i 342 (1033)
..+++++.. +..++++|+.|.|||+++.+.+-.....+ .+|+||.|+.+.+..+.+.+...+.. .| ..+.|.+
T Consensus 11 ~~i~~~l~~---~~~vvv~A~TGSGKTt~~pl~lL~~~~~~-~~ilvlqPrR~aA~qia~rva~~l~~~~g--~~VGy~v 84 (812)
T PRK11664 11 PELLTALKT---APQVLLKAPTGAGKSTWLPLQLLQHGGIN-GKIIMLEPRRLAARNVAQRLAEQLGEKPG--ETVGYRM 84 (812)
T ss_pred HHHHHHHHh---CCCEEEEcCCCCCHHHHHHHHHHHcCCcC-CeEEEECChHHHHHHHHHHHHHHhCcccC--ceEEEEe
Confidence 456666654 34789999999999999988765432222 48999999999999999887654421 11 1122221
Q ss_pred cccCCCCCCcceEEEeeeeccceEEEEeCCcccc-------ccCCccEEEEecccCCC------HHHHHHhhc---C--C
Q 001672 343 VRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAAIP------LPVVRSLLG---P--Y 404 (1033)
Q Consensus 343 ~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~-------~l~~adLLvIDEAAAIP------lplL~~Ll~---~--y 404 (1033)
-.... .+....|.|+.|.-+. .+...+++|||||=.-. +.+++.++. + .
T Consensus 85 r~~~~-------------~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 85 RAESK-------------VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred cCccc-------------cCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccce
Confidence 11000 0112235666665432 24568999999997633 345555542 2 2
Q ss_pred eEEEEecccC
Q 001672 405 LVFLSSTVNG 414 (1033)
Q Consensus 405 ~V~lsSTI~G 414 (1033)
+|+||-|+..
T Consensus 152 lilmSATl~~ 161 (812)
T PRK11664 152 LLIMSATLDN 161 (812)
T ss_pred EEEEecCCCH
Confidence 5889999864
No 37
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.25 E-value=0.0029 Score=86.49 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=102.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHH---HHHH-HHHcCCCeEEEecCChhhHHHHHHHHHhh
Q 001672 253 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL---AIAG-AIAAGYSNIFVTAPSPENLKTLFEFVCKG 328 (1033)
Q Consensus 253 ~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGl---aiA~-~i~~g~~nI~VTAPs~env~tlFef~~kg 328 (1033)
...|.+|..|+..++. . ..+.++|+|.-|.|||++|.= ++.. +-..|| +|+..||+-.+++.|-+ .|
T Consensus 1018 ~~Lt~~Q~~Ai~~il~---~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~-~v~glApT~~Aa~~L~~---~g 1088 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS---T--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQL-QVIGLAPTHEAVGELKS---AG 1088 (1960)
T ss_pred CCCCHHHHHHHHHHHh---C--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCC-eEEEEeChHHHHHHHHh---cC
Confidence 3569999999876543 1 245889999999999999942 2222 223464 78889999999988853 34
Q ss_pred cccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc----C-
Q 001672 329 FNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----P- 403 (1033)
Q Consensus 329 l~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~----~- 403 (1033)
.++--. .| | + . ........+. +...+++|||||.++....+..|+. +
T Consensus 1089 ~~a~Ti---------~s----~---l-------~-~~~~~~~~~~----~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~ 1140 (1960)
T TIGR02760 1089 VQAQTL---------DS----F---L-------T-DISLYRNSGG----DFRNTLFILDESSMVSNFQLTHATELVQKSG 1140 (1960)
T ss_pred CchHhH---------HH----H---h-------c-CcccccccCC----CCcccEEEEEccccccHHHHHHHHHhccCCC
Confidence 332100 00 0 0 0 0000001121 2357999999999999999988873 2
Q ss_pred CeEEEEecccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccCCCCc
Q 001672 404 YLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDP 466 (1033)
Q Consensus 404 y~V~lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~gDP 466 (1033)
-+++|..-..=....|.|-.+++++.-. .+..+.|++.+|=. +||
T Consensus 1141 ak~vlvGD~~QL~sV~aG~~f~~~~~~~-----------------~~~~~~L~~I~RQ~-~~~ 1185 (1960)
T TIGR02760 1141 SRAVSLGDIAQLQSLAAGKPFELAITFD-----------------IIDTAIMKEIVRQN-NSA 1185 (1960)
T ss_pred CEEEEeCChhhcCCCCCCcCHHHHHhcC-----------------CCCeEEeeeEecCC-CCH
Confidence 3688888777777777777666653321 14567899999975 444
No 38
>PHA00673 acetyltransferase domain containing protein
Probab=97.25 E-value=0.0045 Score=63.57 Aligned_cols=93 Identities=10% Similarity=0.004 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHHHhcccCCChhH----------HHHhhcCCCCeEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHH
Q 001672 512 SELFLQRMMALYVSSHYKNSPND----------LQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVL 581 (1033)
Q Consensus 512 sE~fLqq~~~LlV~AHYknsPnD----------LqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~ 581 (1033)
.+.=+-.+..||..-.+-..+.| +..|..+|+++++|... + ++|||.+++...-+++
T Consensus 13 ~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~-----~---g~vVG~~~l~~~p~l~----- 79 (154)
T PHA00673 13 ELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFR-----G---EELVGFACLLVTPVPH----- 79 (154)
T ss_pred cHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEE-----C---CEEEEEEEEEEecCCc-----
Confidence 34445566677655332222111 68899999999999962 1 4799999988653222
Q ss_pred HHHhcCCCCCCCchhHHHHhhhcCCCCCCCcceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 582 KSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 582 ~~l~~G~Rp~GdLIP~~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+.....+.|-.+-|+|++||+|+|+++++..+++..
T Consensus 80 --------------------------~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar 115 (154)
T PHA00673 80 --------------------------FKGQLIGTTESIFVAAAHRPGGAGMALLRATEALAR 115 (154)
T ss_pred --------------------------cCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHH
Confidence 223345679999999999999999999998887654
No 39
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.21 E-value=0.0044 Score=82.43 Aligned_cols=156 Identities=13% Similarity=0.112 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCCeEEEecCChhhHHHHHHHHHhhc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA----AGYSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~----~g~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
..|.+|..|+..++.. ..+.++|+|.-|.|||+++.-.+..+-. .| .+|+..||+-.+++.|-+ .|+
T Consensus 835 ~Lt~~Qr~Av~~iLts-----~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g-~~V~glAPTgkAa~~L~e---~Gi 905 (1623)
T PRK14712 835 KLTSGQRAATRMILET-----SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESER-PRVVGLGPTHRAVGEMRS---AGV 905 (1623)
T ss_pred ccCHHHHHHHHHHHhC-----CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccC-ceEEEEechHHHHHHHHH---hCc
Confidence 5689999998766431 2569999999999999999876665432 24 379999999999999854 354
Q ss_pred ccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc---C--C
Q 001672 330 NAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG---P--Y 404 (1033)
Q Consensus 330 ~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~---~--y 404 (1033)
++.-.... +.+ ..+ +....+ ......+|+|||||.++....+..|+. . -
T Consensus 906 ~A~TIasf----------------L~~----~~~-----~~~~~~-~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~ga 959 (1623)
T PRK14712 906 DAQTLASF----------------LHD----TQL-----QQRSGE-TPDFSNTLFLLDESSMVGNTDMARAYALIAAGGG 959 (1623)
T ss_pred hHhhHHHH----------------hcc----ccc-----hhhccc-CCCCCCcEEEEEccccccHHHHHHHHHhhhhCCC
Confidence 43111000 000 000 000000 001246999999999999988877763 2 3
Q ss_pred eEEEEecccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEecccccc
Q 001672 405 LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRY 461 (1033)
Q Consensus 405 ~V~lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRy 461 (1033)
+|+|..-..=...-|-|=.++.++.= . .+..++|++=+|-
T Consensus 960 rvVLVGD~~QL~sV~aG~~F~~lq~~---~--------------~~~ta~L~eI~RQ 999 (1623)
T PRK14712 960 RAVASGDTDQLQAIAPGQPFRLQQTR---S--------------AADVVIMKEIVRQ 999 (1623)
T ss_pred EEEEEcchhhcCCCCCCHHHHHHHHc---C--------------CCCeEEeCeeecC
Confidence 78888888878777777655555431 1 1446788888887
No 40
>PRK10562 putative acetyltransferase; Provisional
Probab=97.18 E-value=0.00077 Score=66.66 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=48.7
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 001672 616 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 695 (1033)
Q Consensus 616 IVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~ 695 (1033)
|-+++|||+|||+|||+.+++.+.+.+.
T Consensus 71 i~~~~v~~~~rg~G~g~~ll~~~~~~~~---------------------------------------------------- 98 (145)
T PRK10562 71 VGALFVAPKAVRRGIGKALMQHVQQRYP---------------------------------------------------- 98 (145)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHhhCC----------------------------------------------------
Confidence 5679999999999999999987754221
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcceEEE
Q 001672 696 QPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMV 742 (1033)
Q Consensus 696 ~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~im 742 (1033)
. -++.| +.-+....+||+|+||..+. ....+.+|+-+.||
T Consensus 99 ---~-~~~~v-~~~N~~s~~~y~k~Gf~~~~--~~~~~~~~~~~~~~ 138 (145)
T PRK10562 99 ---H-LSLEV-YQKNQRAVNFYHAQGFRIVD--SAWQEETQHPTWIM 138 (145)
T ss_pred ---e-EEEEE-EcCChHHHHHHHHCCCEEcc--ccccCCCCCEEEEE
Confidence 0 11222 23467899999999999976 45666667666665
No 41
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.17 E-value=0.0013 Score=76.02 Aligned_cols=121 Identities=20% Similarity=0.250 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 334 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy 334 (1033)
++.+|.+++..+++++... ....+.|||.=|.|||.++=.....+-..+ ..+++|||+--++..+- . |-
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~-~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~-~~~~~~a~tg~AA~~i~----~-----G~ 70 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENE-EGLNFFVTGPAGTGKSFLIKAIIDYLRSRG-KKVLVTAPTGIAAFNIP----G-----GR 70 (364)
T ss_pred CCHHHHHHHHHHHHHHHcc-CCcEEEEEcCCCCChhHHHHHHHHHhcccc-ceEEEecchHHHHHhcc----C-----Cc
Confidence 5789999999999888763 345788999999999999976666554433 57999999987765440 0 11
Q ss_pred cccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHh
Q 001672 335 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSL 400 (1033)
Q Consensus 335 ~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~L 400 (1033)
.-|--|.+--..++. ...+ +. ..+.....+..+++|||||+.++.-.++..+
T Consensus 71 T~hs~f~i~~~~~~~---~~~~----------~~-~~~~~~~~l~~~~~lIiDEism~~~~~l~~i 122 (364)
T PF05970_consen 71 TIHSFFGIPINNNEK---SQCK----------IS-KNSRLRERLRKADVLIIDEISMVSADMLDAI 122 (364)
T ss_pred chHHhcCcccccccc---cccc----------cc-ccchhhhhhhhheeeecccccchhHHHHHHH
Confidence 111111111111100 0000 00 0111123466799999999999999888755
No 42
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.07 E-value=0.0022 Score=72.54 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=38.0
Q ss_pred HHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC
Q 001672 265 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 314 (1033)
Q Consensus 265 ~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs 314 (1033)
.|++....+.....+.|+|+.|.|||.+++-.+-.++..|++-+||+.|+
T Consensus 145 ~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~ 194 (306)
T PRK08939 145 DFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE 194 (306)
T ss_pred HHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH
Confidence 34443333323458999999999999999977667777899889999983
No 43
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.06 E-value=0.0069 Score=75.52 Aligned_cols=147 Identities=22% Similarity=0.279 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
..|..|.+|+..+..-+..+. ..-++|.|+-|.|||.+.-+++..++..|+ .++|-||+.+-+...++.+.+-+..+|
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~-~~~~Ll~~~TGSGKT~va~~~il~~~~~g~-q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPK-PMNRLLQGDVGSGKTVVAALAALAAIEAGY-QAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccC-CceEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 479999999998877554432 235799999999999999888888777775 689999999999999988887776655
Q ss_pred ccccccccccccCCCC-CCc----ceE--EEeee-eccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhh----
Q 001672 334 YKEHIDYDIVRSSNPD-LRK----PIV--RINIY-RQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL---- 401 (1033)
Q Consensus 334 y~e~~dy~i~~s~~p~-~~~----ai~--ri~~~-~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll---- 401 (1033)
.+-. ++.+..+. -.+ .+. .+++. -+| ..++ +...+...+++|||||=-+....-..+.
T Consensus 339 i~v~----ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~-~ll~-----~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~ 408 (681)
T PRK10917 339 IRVA----LLTGSLKGKERREILEAIASGEADIVIGTH-ALIQ-----DDVEFHNLGLVIIDEQHRFGVEQRLALREKGE 408 (681)
T ss_pred cEEE----EEcCCCCHHHHHHHHHHHhCCCCCEEEchH-HHhc-----ccchhcccceEEEechhhhhHHHHHHHHhcCC
Confidence 4321 11111100 000 000 01111 111 1111 1112457899999999887777666655
Q ss_pred cCCeEEEEecc
Q 001672 402 GPYLVFLSSTV 412 (1033)
Q Consensus 402 ~~y~V~lsSTI 412 (1033)
.+..++||.|-
T Consensus 409 ~~~iL~~SATp 419 (681)
T PRK10917 409 NPHVLVMTATP 419 (681)
T ss_pred CCCEEEEeCCC
Confidence 24567788884
No 44
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=97.06 E-value=0.00092 Score=64.06 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=28.5
Q ss_pred CcceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 611 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 611 l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
...+-|.-+||||+|||+|+|+++++.+.+++.
T Consensus 70 ~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~ 102 (127)
T PF13527_consen 70 FKAAYIGDVAVDPEYRGRGLGRQLMRALLERAR 102 (127)
T ss_dssp EEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999988765
No 45
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.05 E-value=0.0064 Score=81.84 Aligned_cols=157 Identities=12% Similarity=0.109 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCCeEEEecCChhhHHHHHHHHHhhc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA----GYSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~----g~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
..|.+|..|+..++. . ..+.++|+|.-|.|||++|...+..+-.. |+ +|+..||+-.+++.|-+ .|+
T Consensus 967 ~Lt~~Q~~Av~~il~---s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~-~V~glAPTgrAAk~L~e---~Gi 1037 (1747)
T PRK13709 967 GLTSGQRAATRMILE---S--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERP-RVVGLGPTHRAVGEMRS---AGV 1037 (1747)
T ss_pred CCCHHHHHHHHHHHh---C--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCc-eEEEECCcHHHHHHHHh---cCc
Confidence 468899999886653 1 24699999999999999998776665322 33 68999999999998764 344
Q ss_pred ccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc-----CC
Q 001672 330 NAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----PY 404 (1033)
Q Consensus 330 ~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~-----~y 404 (1033)
++.=.... +.+ .. .+....+. .....+|+|||||.++...++..|+. ..
T Consensus 1038 ~A~TI~s~----------------L~~------~~---~~~~~~~~-~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~ga 1091 (1747)
T PRK13709 1038 DAQTLASF----------------LHD------TQ---LQQRSGET-PDFSNTLFLLDESSMVGNTDMARAYALIAAGGG 1091 (1747)
T ss_pred chhhHHHH----------------hcc------cc---cccccccC-CCCCCcEEEEEccccccHHHHHHHHHhhhcCCC
Confidence 32110000 000 00 01111111 11246999999999999999988873 13
Q ss_pred eEEEEecccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccC
Q 001672 405 LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYA 462 (1033)
Q Consensus 405 ~V~lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya 462 (1033)
+|+|..-.+=...-|.|-.++.++. .. .+..++|++=+|-.
T Consensus 1092 rvVLVGD~~QL~sV~aG~~f~~l~~---~~--------------~i~~~~L~eI~RQ~ 1132 (1747)
T PRK13709 1092 RAVSSGDTDQLQAIAPGQPFRLMQT---RS--------------AADVAIMKEIVRQT 1132 (1747)
T ss_pred EEEEecchHhcCCCCCChHHHHHHH---hC--------------CCCeEEeCeEEcCc
Confidence 6888888888888888865555433 11 14467888888876
No 46
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=97.04 E-value=0.0013 Score=68.67 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=27.2
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+.|..|+|+|+|||+|||+++++.+++|..
T Consensus 124 ~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~ 153 (191)
T TIGR02382 124 ARIGLLAVFPGAQSRGIGAELMQTALNWCY 153 (191)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 468889999999999999999999999864
No 47
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=97.03 E-value=0.0011 Score=65.59 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=26.5
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
..|..|+|+|+|||+|||+.+++.+.++..
T Consensus 86 ~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~ 115 (150)
T PLN02706 86 GHIEDVVVDSAARGKGLGKKIIEALTEHAR 115 (150)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 347789999999999999999999998764
No 48
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.02 E-value=0.0012 Score=79.19 Aligned_cols=64 Identities=25% Similarity=0.297 Sum_probs=52.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHH
Q 001672 253 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFE 323 (1033)
Q Consensus 253 ~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFe 323 (1033)
.+....|.+|+. |. +. .+.+..|-|+.|.||+.+|=..|..++.+| .+|+|||||-.+|..+.+
T Consensus 184 ~~ln~SQk~Av~-~~--~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 184 KNLNSSQKAAVS-FA--IN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred ccccHHHHHHHH-HH--hc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHH
Confidence 344556666664 32 22 236899999999999999999999999998 799999999999999999
No 49
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.02 E-value=0.0032 Score=73.08 Aligned_cols=115 Identities=15% Similarity=0.242 Sum_probs=80.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCCeEEEecCChhh-HHHHHHHHHhhcccccccccccccccccCCCCCCcc
Q 001672 277 STVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPEN-LKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKP 353 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i~~--g~~nI~VTAPs~en-v~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~a 353 (1033)
+..++.|+||.|||.+..+.+...+.. ...|++|+.|+... -.++|.-+...++.+|+.. .|.+ +.+| .
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~--~~~~--~~~~----~ 73 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINY--EFKK--SKSS----M 73 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChh--heee--cCCc----c
Confidence 357899999999999999887765554 56899999999985 4567777787888777542 1221 2222 0
Q ss_pred eEEEeeeeccceEEEEeCC-cccccc---CCccEEEEecccCCCHHHHHHhhc
Q 001672 354 IVRINIYRQHRQTIQYMEP-HEHEKL---AQVELLVIDEAAAIPLPVVRSLLG 402 (1033)
Q Consensus 354 i~ri~~~~~h~q~Iqyi~P-d~~~~l---~~adLLvIDEAAAIPlplL~~Ll~ 402 (1033)
.|. +...+++|.|..- ++..++ ...+++.||||+-+|-...++++.
T Consensus 74 --~i~-~~~~g~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~~~~~~l~~ 123 (396)
T TIGR01547 74 --EIK-ILNTGKKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTFEDIKELIP 123 (396)
T ss_pred --EEE-ecCCCeEEEeecccCChhHhhCcceeeeehhhhhhhcCHHHHHHHHH
Confidence 111 2222677888766 544433 225899999999999998888873
No 50
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.01 E-value=0.00089 Score=75.42 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=26.5
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 615 RIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 615 RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.|-+|||||+|||+|+|+++|+.++++..
T Consensus 27 ~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~ 55 (297)
T cd02169 27 VLKCVAVCPKYQGEGLALKIVSELINKAY 55 (297)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 48899999999999999999999998764
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.97 E-value=0.009 Score=73.83 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
..|..|.+|+..+....... .....+|.|+-|.|||.+.-+++..++..|+ .++|.||+.+=+...++.+.+-|..+|
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~-~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~-qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSD-VPMNRLLQGDVGSGKTLVAALAMLAAIEAGY-QVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCHHHHHHHHHHHHHhccC-CCccEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 36999999999887654322 1224699999999999998888888887775 699999999999999888877776555
Q ss_pred ccccccccccccCCCCCC-c----ce----EEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhh---
Q 001672 334 YKEHIDYDIVRSSNPDLR-K----PI----VRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL--- 401 (1033)
Q Consensus 334 y~e~~dy~i~~s~~p~~~-~----ai----~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll--- 401 (1033)
.+-. ++.+..+.-. + .+ ..|- +-+|.. ++ +...+...+++|||||=-++...-..+.
T Consensus 313 i~v~----lltg~~~~~~r~~~~~~i~~g~~~Ii-VgT~~l-l~-----~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~ 381 (630)
T TIGR00643 313 IEVA----LLTGSLKGKRRKELLETIASGQIHLV-VGTHAL-IQ-----EKVEFKRLALVIIDEQHRFGVEQRKKLREKG 381 (630)
T ss_pred cEEE----EEecCCCHHHHHHHHHHHhCCCCCEE-EecHHH-Hh-----ccccccccceEEEechhhccHHHHHHHHHhc
Confidence 4321 1111100000 0 00 0111 111211 11 0112346799999999887776544443
Q ss_pred ----cCCeEEEEecc
Q 001672 402 ----GPYLVFLSSTV 412 (1033)
Q Consensus 402 ----~~y~V~lsSTI 412 (1033)
.++.++||.|.
T Consensus 382 ~~~~~~~~l~~SATp 396 (630)
T TIGR00643 382 QGGFTPHVLVMSATP 396 (630)
T ss_pred ccCCCCCEEEEeCCC
Confidence 24567888884
No 52
>PRK10514 putative acetyltransferase; Provisional
Probab=96.93 E-value=0.0016 Score=63.91 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.6
Q ss_pred EEEEeeCcccccCChHHHHHHHHHH
Q 001672 616 IVRIATHPSAMRLGYGSTAVELLTR 640 (1033)
Q Consensus 616 IVRIAvhPd~q~~GyGsraL~~L~~ 640 (1033)
|-.|+|||+|||+|||+.+++.+.+
T Consensus 72 ~~~~~v~p~~rgkGig~~Ll~~~~~ 96 (145)
T PRK10514 72 MEALFVDPDVRGCGVGRMLVEHALS 96 (145)
T ss_pred EeEEEECHHhccCCHHHHHHHHHHH
Confidence 3479999999999999999887765
No 53
>PRK05279 N-acetylglutamate synthase; Validated
Probab=96.91 E-value=0.0015 Score=77.25 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=26.8
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+.|.+|+|||+|||+|+|+++++.+.++..
T Consensus 360 ~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~ 389 (441)
T PRK05279 360 GEMACLAVHPDYRGSGRGERLLKRIEQRAR 389 (441)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999999987654
No 54
>PRK07757 acetyltransferase; Provisional
Probab=96.90 E-value=0.0016 Score=64.66 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=26.6
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
..|-.|+|+|+|||+|||+++++.+.++..
T Consensus 66 ~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~ 95 (152)
T PRK07757 66 AEIRSLAVSEDYRGQGIGRMLVEACLEEAR 95 (152)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 357789999999999999999999988764
No 55
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.87 E-value=0.013 Score=66.53 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=28.0
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.+.|..|+|+|++||+|+|+.+|+.+.++..
T Consensus 257 ~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~ 287 (320)
T TIGR01686 257 NLFIDDLCMSCRALGRGVETRMLRWLFEQAL 287 (320)
T ss_pred cEEEEEEEEcHhHhcCcHHHHHHHHHHHHHH
Confidence 4689999999999999999999999987654
No 56
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.84 E-value=0.0054 Score=80.35 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=83.0
Q ss_pred HHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhHHHHHHHHHhhcccccccccccccc
Q 001672 264 ITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDI 342 (1033)
Q Consensus 264 ~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i 342 (1033)
..++++|.+ +.+++|+|+.|.|||+.+=..+... ..| ..+|++|-|..-++.++.+.+...+..- ..+.+.|.+
T Consensus 73 ~~Il~~l~~---~~vvii~g~TGSGKTTqlPq~lle~-~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~-lG~~VGY~v 147 (1283)
T TIGR01967 73 EDIAEAIAE---NQVVIIAGETGSGKTTQLPKICLEL-GRGSHGLIGHTQPRRLAARTVAQRIAEELGTP-LGEKVGYKV 147 (1283)
T ss_pred HHHHHHHHh---CceEEEeCCCCCCcHHHHHHHHHHc-CCCCCceEecCCccHHHHHHHHHHHHHHhCCC-cceEEeeEE
Confidence 456666654 4589999999999999875544321 112 2479999999999999999988776421 011122221
Q ss_pred cccCCCCCCcceEEEeeeeccceEEEEeCCcccc-------ccCCccEEEEeccc--CCCHH----HHHHhhc--CC--e
Q 001672 343 VRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAA--AIPLP----VVRSLLG--PY--L 405 (1033)
Q Consensus 343 ~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~-------~l~~adLLvIDEAA--AIPlp----lL~~Ll~--~y--~ 405 (1033)
-... ..+....|.|+.|--+. .+...+.+|||||= .+-.. ++++++. +. +
T Consensus 148 R~~~-------------~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKl 214 (1283)
T TIGR01967 148 RFHD-------------QVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKI 214 (1283)
T ss_pred cCCc-------------ccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeE
Confidence 1000 00122346666665432 24578999999998 44443 4566652 22 5
Q ss_pred EEEEecccC
Q 001672 406 VFLSSTVNG 414 (1033)
Q Consensus 406 V~lsSTI~G 414 (1033)
|+||-|+..
T Consensus 215 IlmSATld~ 223 (1283)
T TIGR01967 215 IITSATIDP 223 (1283)
T ss_pred EEEeCCcCH
Confidence 889999963
No 57
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=96.83 E-value=0.0033 Score=62.37 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=50.7
Q ss_pred EEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCC
Q 001672 618 RIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQP 697 (1033)
Q Consensus 618 RIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~~ 697 (1033)
.|+|+|+|||+|||+.+++.+.++.....
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~~~~~~~~--------------------------------------------------- 111 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMIEMCDNWL--------------------------------------------------- 111 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhC---------------------------------------------------
Confidence 58999999999999999999988754210
Q ss_pred CCcc-eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcc
Q 001672 698 EKLN-YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 738 (1033)
Q Consensus 698 ~~~d-ylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEh 738 (1033)
+++ .....+.-+....+||+|+||+.+.......-..|.+
T Consensus 112 -~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~ 152 (162)
T PRK10140 112 -RVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEY 152 (162)
T ss_pred -CccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeE
Confidence 111 1123345578899999999999998877665555544
No 58
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=96.83 E-value=0.0029 Score=64.17 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=28.1
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.+.|.+|||+|+|||+|||+.+++.+.+++.
T Consensus 66 ~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~ 96 (157)
T TIGR02406 66 VLFVWQVAVDPRARGKGLARRLLEALLERVA 96 (157)
T ss_pred eEEEEEEEEChHhccCcHHHHHHHHHHHHHH
Confidence 3778999999999999999999999998764
No 59
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=96.79 E-value=0.0043 Score=64.72 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.8
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+.|..++|+|+|||+|||+.+++.+.++..
T Consensus 127 ~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~ 156 (194)
T PRK10975 127 ARIGLLAVFPGAQGRGIGARLMQAALNWCQ 156 (194)
T ss_pred eEEEEEEEChhhcCCCHHHHHHHHHHHHHH
Confidence 557788999999999999999999998763
No 60
>PRK07922 N-acetylglutamate synthase; Validated
Probab=96.77 E-value=0.0026 Score=65.50 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=26.7
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+.|-.|+|||+|||+|+|+.+++.+.++..
T Consensus 71 ~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~ 100 (169)
T PRK07922 71 AEIRTVAVDPAARGRGVGHAIVERLLDVAR 100 (169)
T ss_pred eEEEEEEECHHHhCCCHHHHHHHHHHHHHH
Confidence 457789999999999999999999988764
No 61
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.76 E-value=0.0034 Score=62.84 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhHHHHHHHHHhhccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env~tlFef~~kgl~a 331 (1033)
|.-|.+++..+. .+ +-+++.|+-|-|||.+.=+++...+..+ ...++|..|+.+-+...++-+.+-+..
T Consensus 1 t~~Q~~~~~~i~----~~---~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAII----SG---KNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHH----TT---SEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHH----cC---CCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc
Confidence 567999887554 22 3589999999999999888777777665 348999999999999999877665543
No 62
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=96.72 E-value=0.0051 Score=56.82 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=24.0
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHH
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRY 641 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~ 641 (1033)
..|..+.|+|++||+|||+.++..|.+-
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~ 49 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARE 49 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHH
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHH
Confidence 5888999999999999999999887653
No 63
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.0082 Score=65.97 Aligned_cols=133 Identities=15% Similarity=0.195 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHHhcccC--CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 256 TLDQGKAVITFLDAILDKTL--RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~--r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
+.+|..|+..+.. +.+... ...++|+|+.|.|||.++--.+..++..|++=+++|++ .+++.+...+..-+
T Consensus 78 ~~~q~~al~~a~~-~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~------~l~~~l~~~~~~~~ 150 (244)
T PRK07952 78 CEGQMNALSKARQ-YVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA------DIMSAMKDTFSNSE 150 (244)
T ss_pred CchHHHHHHHHHH-HHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH------HHHHHHHHHHhhcc
Confidence 4567666655443 333211 24799999999999998765555566668766777654 33333222211000
Q ss_pred ccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCcc-ccccCCccEEEEecccCCCHH-----HHHHhh-cCC--
Q 001672 334 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHE-HEKLAQVELLVIDEAAAIPLP-----VVRSLL-GPY-- 404 (1033)
Q Consensus 334 y~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~-~~~l~~adLLvIDEAAAIPlp-----lL~~Ll-~~y-- 404 (1033)
....+ +..+..+|||||||..+.+.. ++..++ .+|
T Consensus 151 ------------------------------------~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~ 194 (244)
T PRK07952 151 ------------------------------------TSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSS 194 (244)
T ss_pred ------------------------------------ccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 00111 122457999999999998743 566666 344
Q ss_pred --eEEEEecccCCCCCCcchhHHHHHHhhh
Q 001672 405 --LVFLSSTVNGYEGTGRSLSLKLLHQLEQ 432 (1033)
Q Consensus 405 --~V~lsSTI~GYEGTGRgfsLKf~~~L~~ 432 (1033)
.+|++|- ..++.-+..|.=|.+..|..
T Consensus 195 ~~~tiitSN-l~~~~l~~~~g~ri~sRl~~ 223 (244)
T PRK07952 195 KRPTGMLTN-SNMEEMTKLLGERVMDRMRL 223 (244)
T ss_pred CCCEEEeCC-CCHHHHHHHhChHHHHHHHH
Confidence 3665554 44455555555566777753
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=96.70 E-value=0.0081 Score=74.64 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=39.9
Q ss_pred HHHHHHhcccCCcEEEEEeCCCCCHHHHH------------HHHHHHHHH-c-CCCeEEEecCChhhHHHHHHHHH
Q 001672 265 TFLDAILDKTLRSTVALLAARGRGKSAAL------------GLAIAGAIA-A-GYSNIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 265 ~~~~~i~ek~~r~~vvLTA~RGRGKSAaL------------GlaiA~~i~-~-g~~nI~VTAPs~env~tlFef~~ 326 (1033)
+++..+.+ .+.++++|+-|.|||+++ |+.....+. . ...+|+||+|+.+.+..+.+-+.
T Consensus 171 qil~~i~~---gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 171 KIFEAWIS---RKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHh---CCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHH
Confidence 34444443 458999999999999985 333322222 1 23589999999998888776554
No 65
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.70 E-value=0.0029 Score=59.43 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=73.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc-CCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcceEE
Q 001672 278 TVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 356 (1033)
Q Consensus 278 ~vvLTA~RGRGKSAaLGlaiA~~i~~-g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~r 356 (1033)
-++|+++.|.|||..+=..+..+... +..+|+|++|+..-++...+.+.+-+.. ...+.+...........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--- 73 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-----GIKVGYLIGGTSIKQQE--- 73 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-----CcEEEEEecCcchhHHH---
Confidence 36899999999997775555555543 4578999999999999998888766542 11112211111000000
Q ss_pred EeeeeccceEEEEeCCccccc--------cCCccEEEEecccCCCHHHHHHh-----h----cCCeEEEEec
Q 001672 357 INIYRQHRQTIQYMEPHEHEK--------LAQVELLVIDEAAAIPLPVVRSL-----L----GPYLVFLSST 411 (1033)
Q Consensus 357 i~~~~~h~q~Iqyi~Pd~~~~--------l~~adLLvIDEAAAIPlplL~~L-----l----~~y~V~lsST 411 (1033)
. .......|.+..++.+.. ....+++|||||=.+.-+..... . +...+++|.|
T Consensus 74 -~-~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 74 -K-LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred -H-HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEecc
Confidence 0 001223355555553321 23589999999988876654332 1 1235677776
No 66
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=96.69 E-value=0.0079 Score=74.15 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=27.5
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+.|.+|+|||+|||+|||+.+++.+.+++.
T Consensus 528 ~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak 557 (614)
T PRK12308 528 AEIRSLGVEAGWQVQGQGSALVQYLVEKAR 557 (614)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999988765
No 67
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.66 E-value=0.009 Score=60.11 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~ 325 (1033)
...|.+|+..+++.+......+.++|.|+-|.|||-.+..+++.+.. ++++.+|+..=+....+-+
T Consensus 5 r~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 5 RPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp -HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHH
Confidence 45799999999988776522457899999999999988755555543 8999999987777665444
No 68
>PRK09831 putative acyltransferase; Provisional
Probab=96.59 E-value=0.0031 Score=62.75 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHH
Q 001672 616 IVRIATHPSAMRLGYGSTAVELLTRY 641 (1033)
Q Consensus 616 IVRIAvhPd~q~~GyGsraL~~L~~~ 641 (1033)
|..|+|+|+|||+|||+++|+.+.+.
T Consensus 75 i~~~~v~p~~~g~GiG~~Ll~~~~~~ 100 (147)
T PRK09831 75 IDMLFVDPEYTRRGVASALLKPLIKS 100 (147)
T ss_pred eeeEEECHHHcCCCHHHHHHHHHHHH
Confidence 56799999999999999999988764
No 69
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.01 Score=67.31 Aligned_cols=137 Identities=22% Similarity=0.384 Sum_probs=91.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccc
Q 001672 253 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1033)
Q Consensus 253 ~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aL 332 (1033)
..+|.-|.+|-..++..+..+ ...++-|=-|.||+-.+=-+++.++..| .+|.+.||..+-+-.|..-+...|...
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k---~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQK---EDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred cccChhHHHHHHHHHHHHHhc---CcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccC
Confidence 456889999998888888653 4778999999999999999999999999 599999999999999887777766522
Q ss_pred cccccccccccccCCCC-CCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCH---HHHHHhhc------
Q 001672 333 EYKEHIDYDIVRSSNPD-LRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPL---PVVRSLLG------ 402 (1033)
Q Consensus 333 gy~e~~dy~i~~s~~p~-~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPl---plL~~Ll~------ 402 (1033)
+ ..+.....+. |...++ |-..| |.++| ....|++||||.-|.|. ++|..-+.
T Consensus 172 ~------I~~Lyg~S~~~fr~plv---VaTtH-QLlrF--------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 172 D------IDLLYGDSDSYFRAPLV---VATTH-QLLRF--------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred C------eeeEecCCchhccccEE---EEehH-HHHHH--------HhhccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 2 1111111111 110010 01111 22222 13479999999999998 44544442
Q ss_pred CCeEEEEec
Q 001672 403 PYLVFLSST 411 (1033)
Q Consensus 403 ~y~V~lsST 411 (1033)
.-.++|+.|
T Consensus 234 g~~IylTAT 242 (441)
T COG4098 234 GATIYLTAT 242 (441)
T ss_pred CceEEEecC
Confidence 125666666
No 70
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.57 E-value=0.014 Score=76.66 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhHHHHHHHHHhhccc-ccc
Q 001672 257 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNA-IEY 334 (1033)
Q Consensus 257 ~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env~tlFef~~kgl~a-Lgy 334 (1033)
..+.+ ..+++++.+ +.+++|+|..|.|||+.|=..+-.+ ..| ..+|.+|-|..-++.++-+.+...++. +|
T Consensus 75 i~~~r--~~Il~ai~~---~~VviI~GeTGSGKTTqlPq~lle~-g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG- 147 (1294)
T PRK11131 75 VSQKK--QDILEAIRD---HQVVIVAGETGSGKTTQLPKICLEL-GRGVKGLIGHTQPRRLAARTVANRIAEELETELG- 147 (1294)
T ss_pred HHHHH--HHHHHHHHh---CCeEEEECCCCCCHHHHHHHHHHHc-CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc-
Confidence 34444 345666654 4589999999999999765322211 122 247999999999999999998887764 32
Q ss_pred cccccccccccCCCCCCcceEEEeeeeccceEEEEeCCcccc-------ccCCccEEEEecccC--CCH----HHHHHhh
Q 001672 335 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA--IPL----PVVRSLL 401 (1033)
Q Consensus 335 ~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~-------~l~~adLLvIDEAAA--IPl----plL~~Ll 401 (1033)
..+.|.+-... . .+.+..|.|+.|--+. .+...+.+|||||=- +.. -+|++++
T Consensus 148 -~~VGY~vrf~~------~-------~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL 213 (1294)
T PRK11131 148 -GCVGYKVRFND------Q-------VSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELL 213 (1294)
T ss_pred -ceeceeecCcc------c-------cCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhh
Confidence 12233221100 0 0122346666665432 256789999999984 433 3466666
Q ss_pred c--CC--eEEEEeccc
Q 001672 402 G--PY--LVFLSSTVN 413 (1033)
Q Consensus 402 ~--~y--~V~lsSTI~ 413 (1033)
. +. .|+||.|+.
T Consensus 214 ~~rpdlKvILmSATid 229 (1294)
T PRK11131 214 PRRPDLKVIITSATID 229 (1294)
T ss_pred hcCCCceEEEeeCCCC
Confidence 3 22 578999996
No 71
>PLN02825 amino-acid N-acetyltransferase
Probab=96.52 E-value=0.0046 Score=74.50 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=27.4
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.+.|-.|||||+|||+|+|+++|+.++++..
T Consensus 432 ~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar 462 (515)
T PLN02825 432 CGEVAAIAVSPECRGQGQGDKLLDYIEKKAA 462 (515)
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999999999987654
No 72
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.45 E-value=0.039 Score=71.00 Aligned_cols=147 Identities=19% Similarity=0.216 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
-.|.+|.+|+..+...+..++ ..-+++.|+-|.|||.+.-+++..++..| ..++|-+|+.+=+...++.+.+-+..++
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~-~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPR-PMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccC-cCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 359999999998877654432 23578999999999998887777777777 4799999999999999887776655443
Q ss_pred cccccccccccc-CCC-CCCc---ceE--EEe-eeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhh----
Q 001672 334 YKEHIDYDIVRS-SNP-DLRK---PIV--RIN-IYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL---- 401 (1033)
Q Consensus 334 y~e~~dy~i~~s-~~p-~~~~---ai~--ri~-~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll---- 401 (1033)
.+-. ++.+ ... +.++ .+. .++ ++.+|+ .+..+ ..+....+||||||=..+......|.
T Consensus 529 i~v~----~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~~~--v~f~~L~llVIDEahrfgv~~~~~L~~~~~ 598 (926)
T TIGR00580 529 VTIE----LLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQKD--VKFKDLGLLIIDEEQRFGVKQKEKLKELRT 598 (926)
T ss_pred cEEE----EEeccccHHHHHHHHHHHHcCCceEEEchHH----HhhCC--CCcccCCEEEeecccccchhHHHHHHhcCC
Confidence 2210 0000 000 0000 000 011 122331 11111 12446789999999888876655543
Q ss_pred cCCeEEEEecc
Q 001672 402 GPYLVFLSSTV 412 (1033)
Q Consensus 402 ~~y~V~lsSTI 412 (1033)
++..++||.|.
T Consensus 599 ~~~vL~~SATp 609 (926)
T TIGR00580 599 SVDVLTLSATP 609 (926)
T ss_pred CCCEEEEecCC
Confidence 23456778884
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=96.43 E-value=0.023 Score=68.45 Aligned_cols=141 Identities=14% Similarity=0.101 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
..+..|.+|+..++. ....++.|+.|-|||.+.-..+...++.+..+++|-+|+.+=+....+-+.+-+.
T Consensus 114 ~~r~~Q~~av~~~l~-------~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~--- 183 (501)
T PHA02558 114 EPHWYQYDAVYEGLK-------NNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRL--- 183 (501)
T ss_pred CCCHHHHHHHHHHHh-------cCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcc---
Confidence 346789998876543 1236899999999998643322233445555999999999988777665443111
Q ss_pred ccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc-----CCeEEE
Q 001672 334 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----PYLVFL 408 (1033)
Q Consensus 334 y~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~-----~y~V~l 408 (1033)
+. ...+..+.+........ .|.|.. -|++.. .|.+ .+.+.++||||||=-++-+-+..++. +|.+.|
T Consensus 184 ~~-~~~~~~i~~g~~~~~~~--~I~VaT--~qsl~~-~~~~--~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGL 255 (501)
T PHA02558 184 FP-REAMHKIYSGTAKDTDA--PIVVST--WQSAVK-QPKE--WFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGL 255 (501)
T ss_pred cc-ccceeEEecCcccCCCC--CEEEee--HHHHhh-chhh--hccccCEEEEEchhcccchhHHHHHHhhhccceEEEE
Confidence 00 01111111111111111 111111 111110 1111 13468999999998888777766662 457889
Q ss_pred Eecc
Q 001672 409 SSTV 412 (1033)
Q Consensus 409 sSTI 412 (1033)
|.|.
T Consensus 256 TATp 259 (501)
T PHA02558 256 TGSL 259 (501)
T ss_pred eccC
Confidence 9997
No 74
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.41 E-value=0.023 Score=65.24 Aligned_cols=167 Identities=13% Similarity=0.215 Sum_probs=97.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcc
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAI--AAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKP 353 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i--~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~a 353 (1033)
|++++|+|+.|.|||.++- .+|..+ .....++.+..++..-..++-+-+.+.. ......
T Consensus 1 K~v~~I~G~aGTGKTvla~-~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----~~~~~~-------------- 61 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLAL-NLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY----NPKLKK-------------- 61 (352)
T ss_pred CeEEEEEecCCcCHHHHHH-HHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc----ccchhh--------------
Confidence 4689999999999997654 444444 2223455566666666666655543322 000000
Q ss_pred eEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCH-----------HHHHHhhcCC--eEEE---EecccCCCC
Q 001672 354 IVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPL-----------PVVRSLLGPY--LVFL---SSTVNGYEG 417 (1033)
Q Consensus 354 i~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPl-----------plL~~Ll~~y--~V~l---sSTI~GYEG 417 (1033)
..+.....-|+.+.+. .......|++|||||==+.- +.|..++..- .||| .=+|+..|-
T Consensus 62 ----~~~~~~~~~i~~~~~~-~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~v~f~D~~Q~i~~~e~ 136 (352)
T PF09848_consen 62 ----SDFRKPTSFINNYSES-DKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVVVFFYDENQSIRPSEI 136 (352)
T ss_pred ----hhhhhhHHHHhhcccc-cccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCEEEEEEccccEeecccC
Confidence 0000111112222211 11234689999999988877 7888888543 3333 346677774
Q ss_pred CCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeE-EEeccccccCCCCcHHHHHHHhccCCCCCC
Q 001672 418 TGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKK-IELSESIRYAPGDPIESWLNGLLCLDVMNS 482 (1033)
Q Consensus 418 TGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~e-i~L~ePIRya~gDPlE~WL~~lL~LDa~~~ 482 (1033)
.+... ++.+.+... ....+ ++|++.+|=..++-+-.|+.++|=.+...+
T Consensus 137 ~~~~~----l~~~~~~~~------------~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~~ 186 (352)
T PF09848_consen 137 GTLEN----LEEIAENLG------------IEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNISP 186 (352)
T ss_pred CCHHH----HHHHHHhcC------------CccccCcCcCcceecCCCHHHHHHHHHHHhccccCc
Confidence 44333 444433321 22334 399999999999999999999998776654
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.36 E-value=0.034 Score=60.45 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=30.6
Q ss_pred HhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 270 ILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 270 i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
+.+......++|+|++|.|||.++=..+..+...|++-+|+++.
T Consensus 39 ~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 39 ALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred HHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 33333346899999999999998865444555567655677663
No 76
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.33 E-value=0.016 Score=70.39 Aligned_cols=134 Identities=22% Similarity=0.318 Sum_probs=88.8
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcceE
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 355 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ 355 (1033)
..+++|.|..|.|||+=+=--++.+-......|.||-|..-++.+|-.-+...... .+.+.+.|.|
T Consensus 66 nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~-~lG~~VGY~I------------- 131 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGC-QLGEEVGYTI------------- 131 (674)
T ss_pred CCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCC-CcCceeeeEE-------------
Confidence 56999999999999998865555442222234999999999999998887665554 1222233332
Q ss_pred EEeeeeccceEEEEeCCcccc-------ccCCccEEEEecccC--C----CHHHHHHhhcC--C--eEEEEecccCCCCC
Q 001672 356 RINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA--I----PLPVVRSLLGP--Y--LVFLSSTVNGYEGT 418 (1033)
Q Consensus 356 ri~~~~~h~q~Iqyi~Pd~~~-------~l~~adLLvIDEAAA--I----PlplL~~Ll~~--y--~V~lsSTI~GYEGT 418 (1033)
|-+-..++.-.|.|+.---+. .+.+.+++|||||== + =+-+||+++.. - +|+||-|++
T Consensus 132 RFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATld----- 206 (674)
T KOG0922|consen 132 RFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLD----- 206 (674)
T ss_pred EecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeec-----
Confidence 111123445678898766443 256799999999953 3 34566777632 2 588999998
Q ss_pred CcchhHHHHHHhhh
Q 001672 419 GRSLSLKLLHQLEQ 432 (1033)
Q Consensus 419 GRgfsLKf~~~L~~ 432 (1033)
+=||-+....
T Consensus 207 ----a~kfS~yF~~ 216 (674)
T KOG0922|consen 207 ----AEKFSEYFNN 216 (674)
T ss_pred ----HHHHHHHhcC
Confidence 4566666643
No 77
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=96.32 E-value=0.015 Score=59.76 Aligned_cols=80 Identities=16% Similarity=0.078 Sum_probs=57.7
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 001672 617 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 696 (1033)
Q Consensus 617 VRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~ 696 (1033)
+.++++|+|||+|||+.+++.+.+|.-...
T Consensus 86 ~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~-------------------------------------------------- 115 (186)
T PRK15130 86 FQIIISPEYQGKGLATRAAKLAMDYGFTVL-------------------------------------------------- 115 (186)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHhhcC--------------------------------------------------
Confidence 368999999999999999999998753211
Q ss_pred CCCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcceEEEEccCCc
Q 001672 697 PEKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 748 (1033)
Q Consensus 697 ~~~~dyl-GvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~imlk~L~~ 748 (1033)
++.-+ ....-.+....+||+|.||..+......-...|+.--+.+..+..
T Consensus 116 --~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~~~~~~~~ 166 (186)
T PRK15130 116 --NLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNTIRMCIFQ 166 (186)
T ss_pred --CceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEEEEEEeeH
Confidence 11111 122334678999999999999988776666788876665655543
No 78
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.27 E-value=0.011 Score=74.25 Aligned_cols=173 Identities=22% Similarity=0.241 Sum_probs=103.5
Q ss_pred cccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH-Hhhc
Q 001672 251 IKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV-CKGF 329 (1033)
Q Consensus 251 ~~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~-~kgl 329 (1033)
+.+++..||.+|+...+.+ +.-..|.|=.|.|||+++-.++-.+++.| ..|++||=+-.+|..+.-=+ .-+.
T Consensus 666 ~~~~LN~dQr~A~~k~L~a------edy~LI~GMPGTGKTTtI~~LIkiL~~~g-kkVLLtsyThsAVDNILiKL~~~~i 738 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAA------EDYALILGMPGTGKTTTISLLIKILVALG-KKVLLTSYTHSAVDNILIKLKGFGI 738 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhc------cchheeecCCCCCchhhHHHHHHHHHHcC-CeEEEEehhhHHHHHHHHHHhccCc
Confidence 4568889999999876532 33558999999999999999999999998 47999999999988776332 1122
Q ss_pred cc--ccccccccccccccCCCC---------CCcceEEEe--eeeccceEEEEeCCccccccCCccEEEEecccCCCHHH
Q 001672 330 NA--IEYKEHIDYDIVRSSNPD---------LRKPIVRIN--IYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPV 396 (1033)
Q Consensus 330 ~a--Lgy~e~~dy~i~~s~~p~---------~~~ai~ri~--~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlpl 396 (1033)
.. ||..+.++=++-+.+-+. ..+.+-++. ....++ -++-+-...+.|..|||||..|++|+
T Consensus 739 ~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClg------i~~plf~~R~FD~cIiDEASQI~lP~ 812 (1100)
T KOG1805|consen 739 YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLG------INHPLFVNRQFDYCIIDEASQILLPL 812 (1100)
T ss_pred ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccC------CCchhhhccccCEEEEccccccccch
Confidence 22 466554443333322110 001111111 111111 11223344579999999999999998
Q ss_pred HHHhhc-CCeEEEEec-------ccCCCCCCcchhHHHHHHhhhcCCC
Q 001672 397 VRSLLG-PYLVFLSST-------VNGYEGTGRSLSLKLLHQLEQQSHM 436 (1033)
Q Consensus 397 L~~Ll~-~y~V~lsST-------I~GYEGTGRgfsLKf~~~L~~~~~~ 436 (1033)
.-.=+. .-.-||..- |--=|-.-+|+++-+++.|.+..|.
T Consensus 813 ~LgPL~~s~kFVLVGDh~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpe 860 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQLPPLVRSSEARQEGLSESLFKRLSEKHPE 860 (1100)
T ss_pred hhhhhhhcceEEEecccccCCccccchhhhhcCcchHHHHHHhhhCch
Confidence 643321 001111110 0111555667777778999876553
No 79
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.27 E-value=0.052 Score=65.04 Aligned_cols=135 Identities=20% Similarity=0.207 Sum_probs=83.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHH-HHHHcC--CCeEEEecCChhhHHHHHHHHHhhcccccccc-cccccccccCCCCCCcc
Q 001672 278 TVALLAARGRGKSAALGLAIA-GAIAAG--YSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE-HIDYDIVRSSNPDLRKP 353 (1033)
Q Consensus 278 ~vvLTA~RGRGKSAaLGlaiA-~~i~~g--~~nI~VTAPs~env~tlFef~~kgl~aLgy~e-~~dy~i~~s~~p~~~~a 353 (1033)
.+.|.=+||-|||+.++..+. .++..| ...|+++|++.+.++.+|.-+.+-++...... .....+..+.
T Consensus 24 ~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~~~~~~~------- 96 (477)
T PF03354_consen 24 EVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKKPKIIKSN------- 96 (477)
T ss_pred EEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchhhhhhhhh-------
Confidence 577777999999998875433 333334 25799999999999999998876655421110 0011111110
Q ss_pred eEEEeeeeccceEEEEeCCcccccc-CCccEEEEecccCCCHH-HHHHhhc-----C-CeEEEEecccCCCCCCcc
Q 001672 354 IVRINIYRQHRQTIQYMEPHEHEKL-AQVELLVIDEAAAIPLP-VVRSLLG-----P-YLVFLSSTVNGYEGTGRS 421 (1033)
Q Consensus 354 i~ri~~~~~h~q~Iqyi~Pd~~~~l-~~adLLvIDEAAAIPlp-lL~~Ll~-----~-y~V~lsSTI~GYEGTGRg 421 (1033)
-.+|. +......+++++.+.-..- ..++++|+||+.+.+-. +...|.. + .++++.|| .|+.-+|-.
T Consensus 97 ~~~i~-~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~~pl~~~IST-ag~~~~~~~ 170 (477)
T PF03354_consen 97 KKEIE-FPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGARPNPLIIIIST-AGDDRSGPC 170 (477)
T ss_pred ceEEE-EcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccCCCceEEEEeC-CCCCCCcHH
Confidence 01221 2233567788777643322 35899999999999996 6665552 1 25665555 788776643
No 80
>PRK04296 thymidine kinase; Provisional
Probab=96.24 E-value=0.025 Score=59.48 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=39.5
Q ss_pred CCccEEEEecccCCCHHHHHHhh----cCC-eEEEEecccCCCCCCcchhHHHHHHhh
Q 001672 379 AQVELLVIDEAAAIPLPVVRSLL----GPY-LVFLSSTVNGYEGTGRSLSLKLLHQLE 431 (1033)
Q Consensus 379 ~~adLLvIDEAAAIPlplL~~Ll----~~y-~V~lsSTI~GYEGTGRgfsLKf~~~L~ 431 (1033)
.+.|+||||||--++...+..++ ... .|+++.-.+-|.|...+-+.+++..-.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD 134 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALAD 134 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcC
Confidence 36899999999999877444444 222 588888888899988888777776553
No 81
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=96.22 E-value=0.012 Score=47.26 Aligned_cols=34 Identities=24% Similarity=0.122 Sum_probs=30.5
Q ss_pred CcceEEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 001672 611 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYEG 644 (1033)
Q Consensus 611 l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g 644 (1033)
-..+.|.+++|+|+|||+|+|++++..+.+++..
T Consensus 23 ~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~ 56 (65)
T cd04301 23 GDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARE 56 (65)
T ss_pred CccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999998763
No 82
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=96.18 E-value=0.011 Score=65.34 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=25.0
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 615 RIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 615 RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.|--|+|+|+|||+|||+.+++.+.+++.
T Consensus 228 ~i~~~~V~p~~rg~GiG~~ll~~~~~~~~ 256 (292)
T TIGR03448 228 EVYVVGVDPAAQGRGLGDALTLIGLHHLA 256 (292)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHH
Confidence 45557999999999999999999888764
No 83
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.18 E-value=0.013 Score=61.26 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHhcccCCc-EEEEEeCCCCCHHHHHHHHHHHHH-------HcCCCeEEEecCChhhHHHHHHHHHh
Q 001672 256 TLDQGKAVITFLDAILDKTLRS-TVALLAARGRGKSAALGLAIAGAI-------AAGYSNIFVTAPSPENLKTLFEFVCK 327 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~-~vvLTA~RGRGKSAaLGlaiA~~i-------~~g~~nI~VTAPs~env~tlFef~~k 327 (1033)
...|.+||..++. +. ..+|.|+.|.|||+++--+++.++ .....+|+||||+-.++..+.+-+.+
T Consensus 3 n~~Q~~Ai~~~~~-------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALS-------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCT-------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHc-------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3579998865432 22 489999999999988877777662 23446899999999999999988877
No 84
>PRK12377 putative replication protein; Provisional
Probab=96.17 E-value=0.028 Score=61.97 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=73.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcceEE
Q 001672 277 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 356 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~r 356 (1033)
..++|+|+.|.|||.++...+-.++..|++-+++|.|. +++.+..+++. +
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~------l~~~l~~~~~~-~----------------------- 151 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD------VMSRLHESYDN-G----------------------- 151 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH------HHHHHHHHHhc-c-----------------------
Confidence 57999999999999988776667777888878888873 33333322210 0
Q ss_pred EeeeeccceEEEEeCCccccccCCccEEEEecccCCCH-----HHHHHhh-cCC---e-EEEEecccCCCCCCcchhHHH
Q 001672 357 INIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPL-----PVVRSLL-GPY---L-VFLSSTVNGYEGTGRSLSLKL 426 (1033)
Q Consensus 357 i~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPl-----plL~~Ll-~~y---~-V~lsSTI~GYEGTGRgfsLKf 426 (1033)
.+ ..+-+..+..+|||||||.-+.+. .+|-.++ .+| + +| -||-.+++.-+.-|.=+.
T Consensus 152 --------~~----~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~pti-itSNl~~~~l~~~~~~ri 218 (248)
T PRK12377 152 --------QS----GEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVG-MLTNLNHEAMSTLLGERV 218 (248)
T ss_pred --------ch----HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEE-EEcCCCHHHHHHHhhHHH
Confidence 00 001123356799999999988763 3555565 334 3 55 456667777666677777
Q ss_pred HHHhhh
Q 001672 427 LHQLEQ 432 (1033)
Q Consensus 427 ~~~L~~ 432 (1033)
+..|..
T Consensus 219 ~dRl~~ 224 (248)
T PRK12377 219 MDRMTM 224 (248)
T ss_pred HHHHhh
Confidence 888864
No 85
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=96.16 E-value=0.039 Score=61.48 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=54.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCC--CeEEEecCChhhHHHH-HHHHHhhcccccccccccccccccCCCCCCcceEE
Q 001672 280 ALLAARGRGKSAALGLAIAGAIAAGY--SNIFVTAPSPENLKTL-FEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVR 356 (1033)
Q Consensus 280 vLTA~RGRGKSAaLGlaiA~~i~~g~--~nI~VTAPs~env~tl-Fef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~r 356 (1033)
+|-++||-|||.++.+.+...+.... ..|+++ |+...++.. +.+. .....+--. ...+.... .++ +.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~~---~~~-- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFW-KGIIELLPS-WFEIKFNE-WND---RKI-- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHH-HHHHHTS-T-TTS--EEE-E-S---SEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhH-HHHHHHHHH-hcCccccc-CCC---CcE--
Confidence 47899999999999887776655533 345555 777777664 3321 111111000 11111110 000 011
Q ss_pred EeeeeccceEEEEeCCccc---cc--cCCccEEEEecccCCCHHHHHHhh
Q 001672 357 INIYRQHRQTIQYMEPHEH---EK--LAQVELLVIDEAAAIPLPVVRSLL 401 (1033)
Q Consensus 357 i~~~~~h~q~Iqyi~Pd~~---~~--l~~adLLvIDEAAAIPlplL~~Ll 401 (1033)
.+ ..+.+|+|..-+.. .. -..+++++|||||-+|-.....++
T Consensus 72 --~~-~nG~~i~~~~~~~~~~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~ 118 (384)
T PF03237_consen 72 --IL-PNGSRIQFRGADSPDSGDNIRGFEYDLIIIDEAAKVPDDAFSELI 118 (384)
T ss_dssp --EE-TTS-EEEEES-----SHHHHHTS--SEEEEESGGGSTTHHHHHHH
T ss_pred --Ee-cCceEEEEeccccccccccccccccceeeeeecccCchHHHHHHH
Confidence 11 44556888875432 22 246899999999999887666555
No 86
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=96.15 E-value=0.06 Score=63.23 Aligned_cols=66 Identities=26% Similarity=0.244 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc------CCCeEEEecCChhhHHHHHHHHHh
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPSPENLKTLFEFVCK 327 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~------g~~nI~VTAPs~env~tlFef~~k 327 (1033)
.|.-|++|+..+++ + +-+++.|+-|.|||.+.-+++...+.. +..+++|.+|+.+-+..+++-+..
T Consensus 24 p~~iQ~~ai~~~~~----g---~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~ 95 (434)
T PRK11192 24 PTAIQAEAIPPALD----G---RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE 95 (434)
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH
Confidence 37789999876553 2 248999999999999987776654421 235799999999998888765543
No 87
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=96.08 E-value=0.012 Score=64.97 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=24.4
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHH
Q 001672 615 RIVRIATHPSAMRLGYGSTAVELLTRY 641 (1033)
Q Consensus 615 RIVRIAvhPd~q~~GyGsraL~~L~~~ 641 (1033)
.|..|+|||+|||+|+|+++|+.+.+.
T Consensus 72 ~~~~l~V~p~~rg~GiG~~Ll~~~~~~ 98 (292)
T TIGR03448 72 AMAELVVHPAHRRRGIGRALIRALLAK 98 (292)
T ss_pred eEEEEEECHhhcCCCHHHHHHHHHHHh
Confidence 588999999999999999999988753
No 88
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.07 E-value=0.065 Score=70.49 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
..|.+|.+|+..+..-... ....-+++.|+-|.|||.+..+++..++..| ..++|-+|+.+-+...++.+.+-+...+
T Consensus 600 ~~T~~Q~~aI~~il~d~~~-~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g-~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAFLAVENH-KQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhc-CCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 4699999999887765432 2234589999999999988776666666656 4799999999999988877665444322
Q ss_pred ccccccccccccCCC-CCCcceEEEeeeeccceEEEEeCCccc---cccCCccEEEEecccCCCHHHHHHhh--c--CCe
Q 001672 334 YKEHIDYDIVRSSNP-DLRKPIVRINIYRQHRQTIQYMEPHEH---EKLAQVELLVIDEAAAIPLPVVRSLL--G--PYL 405 (1033)
Q Consensus 334 y~e~~dy~i~~s~~p-~~~~ai~ri~~~~~h~q~Iqyi~Pd~~---~~l~~adLLvIDEAAAIPlplL~~Ll--~--~y~ 405 (1033)
..- .++.+..+ .-.+.+.. ..+.....|-.-.|+-+ ..+...++||||||=.++......+- . ...
T Consensus 678 v~i----~~l~g~~s~~e~~~il~--~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~~e~lk~l~~~~qv 751 (1147)
T PRK10689 678 VRI----EMLSRFRSAKEQTQILA--EAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDI 751 (1147)
T ss_pred ceE----EEEECCCCHHHHHHHHH--HHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhHHHHHHhcCCCCcE
Confidence 110 00000000 00000000 00000001112222211 12356899999999888876655442 1 235
Q ss_pred EEEEecc
Q 001672 406 VFLSSTV 412 (1033)
Q Consensus 406 V~lsSTI 412 (1033)
++||.|.
T Consensus 752 Ll~SATp 758 (1147)
T PRK10689 752 LTLTATP 758 (1147)
T ss_pred EEEcCCC
Confidence 6778884
No 89
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=96.06 E-value=0.077 Score=63.04 Aligned_cols=143 Identities=21% Similarity=0.250 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--------CCeEEEecCChhhHHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--------YSNIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g--------~~nI~VTAPs~env~tlFef~~ 326 (1033)
.|..|.+|+-.+++ + +-+++.|+-|.|||.+--|.+-..+..+ ..+++|.+|+.+=+..+++.+.
T Consensus 24 pt~iQ~~ai~~il~----g---~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~ 96 (456)
T PRK10590 24 PTPIQQQAIPAVLE----G---RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVR 96 (456)
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHH
Confidence 47899999875543 3 2489999999999999888776665432 1268999999999888887766
Q ss_pred hhcccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCcccc--------ccCCccEEEEecccCCC----H
Q 001672 327 KGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP----L 394 (1033)
Q Consensus 327 kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~--------~l~~adLLvIDEAAAIP----l 394 (1033)
.-...++..... +.-..+ +...+ ..++ ....|-+..|.-+. .+...++||||||=.+- .
T Consensus 97 ~~~~~~~~~~~~---~~gg~~--~~~~~---~~l~-~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~ 167 (456)
T PRK10590 97 DYSKYLNIRSLV---VFGGVS--INPQM---MKLR-GGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFI 167 (456)
T ss_pred HHhccCCCEEEE---EECCcC--HHHHH---HHHc-CCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccH
Confidence 543333321100 000000 00000 0000 12245666665432 24568999999995431 2
Q ss_pred HHHHHhhc----CC-eEEEEeccc
Q 001672 395 PVVRSLLG----PY-LVFLSSTVN 413 (1033)
Q Consensus 395 plL~~Ll~----~y-~V~lsSTI~ 413 (1033)
.-++.++. .. .++||.|+.
T Consensus 168 ~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 168 HDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred HHHHHHHHhCCccCeEEEEeCCCc
Confidence 22333432 12 577788853
No 90
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.02 E-value=0.033 Score=68.95 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CCeEEEecCChhhHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g--~~nI~VTAPs~env~tlFef~ 325 (1033)
.|.-|++++-.+. .+ +-+++.|..|.|||+|.++.+...+... ...++|.+|+.+=+..+.+-+
T Consensus 29 ptpiQ~~ai~~ll----~g---~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l 94 (629)
T PRK11634 29 PSPIQAECIPHLL----NG---RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAM 94 (629)
T ss_pred CCHHHHHHHHHHH----cC---CCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHH
Confidence 3778999886543 22 3589999999999999999987766543 347999999998877765543
No 91
>PRK10536 hypothetical protein; Provisional
Probab=95.99 E-value=0.05 Score=60.39 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcCCCeEEEecCChhh--------------HH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAPSPEN--------------LK 319 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i-~~g~~nI~VTAPs~en--------------v~ 319 (1033)
+|..|..++..+ .+ ...+++||+-|.|||.+.--++..++ ...|.+|+||-|..+. +.
T Consensus 60 ~n~~Q~~~l~al----~~---~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 60 RNEAQAHYLKAI----ES---KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred CCHHHHHHHHHH----hc---CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 477888866533 22 34899999999999986643333233 4458899999998643 22
Q ss_pred HHHHHHHhhcccc-cccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc-cCCccEEEEecccCCCHHHH
Q 001672 320 TLFEFVCKGFNAI-EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-LAQVELLVIDEAAAIPLPVV 397 (1033)
Q Consensus 320 tlFef~~kgl~aL-gy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~-l~~adLLvIDEAAAIPlplL 397 (1033)
..|.-+...|..+ |.. ..+|-+ +.....|++.+..-+-- .-+.++||||||-.+....+
T Consensus 133 p~~~pi~D~L~~~~~~~-~~~~~~------------------~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~ 193 (262)
T PRK10536 133 PYFRPVYDVLVRRLGAS-FMQYCL------------------RPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQM 193 (262)
T ss_pred HHHHHHHHHHHHHhChH-HHHHHH------------------HhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHH
Confidence 2232222222221 110 011100 00123466665543321 12468999999999999999
Q ss_pred HHhhc---CC-eEEEEec
Q 001672 398 RSLLG---PY-LVFLSST 411 (1033)
Q Consensus 398 ~~Ll~---~y-~V~lsST 411 (1033)
+.++- .. .+|+..-
T Consensus 194 k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 194 KMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHhhcCCCCEEEEeCC
Confidence 99993 22 4555443
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.76 E-value=0.13 Score=64.45 Aligned_cols=71 Identities=24% Similarity=0.190 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
..|.+|++|+..+.+.+ .+..++|.|+.|.|||.+.-.++..++..| ..++|-+|+.+-+..+.+.+.+.|
T Consensus 144 ~Lt~~Q~~ai~~i~~~~----~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA----GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhcc----CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh
Confidence 35889999988775532 245689999999999999887777788777 479999999999988888776644
No 93
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=95.72 E-value=0.11 Score=51.71 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=45.1
Q ss_pred cCCCCeEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHhhhcCCCCCCCcceEEEEE
Q 001672 540 DAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRI 619 (1033)
Q Consensus 540 DaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIP~~ls~q~~d~~f~~l~g~RIVRI 619 (1033)
++|.++.||+.- + ++++|.+++- ++.-+. ++ .-..+-|-++
T Consensus 44 ~~~~~~~~v~~~-----d---g~~~g~~~~~-~~~~~~------------------~~------------~~~~~~~~~~ 84 (152)
T PF13523_consen 44 ADPGHHPYVAED-----D---GEPIGYFEIY-WPDEDY------------------DA------------DDGDRGIHRL 84 (152)
T ss_dssp HTTTEEEEEEEE-----T---TEEEEEEEEE-EGGGSS---------------------------------TTEEEEEEE
T ss_pred ccCCceEEEEEE-----C---CEEEEEEEEe-cccccc------------------cC------------CCCEEEEeee
Confidence 689999998863 1 3688988773 221110 10 1133446677
Q ss_pred eeCcccccCChHHHHHHHHHHHHh
Q 001672 620 ATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 620 AvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+++|+++|+|+|+.+++.++++..
T Consensus 85 ~~~~~~rg~G~g~~~~~~~~~~~~ 108 (152)
T PF13523_consen 85 IVDPEYRGQGLGKAMLRALIEFLF 108 (152)
T ss_dssp ESTGGGTTSSHHHHHHHHHHHHHH
T ss_pred eechhhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 94
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=95.71 E-value=0.066 Score=63.47 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC--CeEEEecCChhhHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY--SNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~--~nI~VTAPs~env~tlFef~ 325 (1033)
.|..|.+|+-.+++ + +-+++.|+-|.|||++.++++...+..+. ..++|-+|+.+=+..+.+-+
T Consensus 27 ~t~iQ~~ai~~~l~----g---~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~ 92 (460)
T PRK11776 27 MTPIQAQSLPAILA----G---KDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEI 92 (460)
T ss_pred CCHHHHHHHHHHhc----C---CCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHH
Confidence 47899999876543 2 35899999999999999998887775432 35788889998877766543
No 95
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.71 E-value=0.049 Score=57.72 Aligned_cols=43 Identities=28% Similarity=0.242 Sum_probs=30.5
Q ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh
Q 001672 273 KTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 315 (1033)
Q Consensus 273 k~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~ 315 (1033)
......++|+|++|.|||+++-..+-.+...|..-++|++...
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3346689999999999999887655555545555567766543
No 96
>PRK08181 transposase; Validated
Probab=95.71 E-value=0.058 Score=60.24 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
+..|..++...-+.+.+ ..-++|+|+.|.|||.++--.+-.++..|++=+|+|++
T Consensus 89 ~~~~~~~L~~~~~~~~~---~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAK---GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred CHHHHHHHHHHHHHHhc---CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 45666666533233332 34699999999999987654444456678877888874
No 97
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.059 Score=59.56 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccccccc
Q 001672 260 GKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHID 339 (1033)
Q Consensus 260 ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~d 339 (1033)
-..+..+.+.+. ...-++++|+.|.|||-++.-..-.++..|.+-+|||+|.. |.=+..+++. |
T Consensus 92 l~~~~~~~~~~~---~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el------~~~Lk~~~~~-~------ 155 (254)
T COG1484 92 LEDLASLVEFFE---RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL------LSKLKAAFDE-G------ 155 (254)
T ss_pred HHHHHHHHHHhc---cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH------HHHHHHHHhc-C------
Confidence 333444444443 34578999999999998775443445556888899999842 2222222221 0
Q ss_pred ccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc-cCCccEEEEecccCCCHH-----HHHHhh-cCC--eEEEEe
Q 001672 340 YDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-LAQVELLVIDEAAAIPLP-----VVRSLL-GPY--LVFLSS 410 (1033)
Q Consensus 340 y~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~-l~~adLLvIDEAAAIPlp-----lL~~Ll-~~y--~V~lsS 410 (1033)
-....+.. +..+|||||||-.+.|.. .+-+++ ..| ...+-|
T Consensus 156 ------------------------------~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~t 205 (254)
T COG1484 156 ------------------------------RLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIIT 205 (254)
T ss_pred ------------------------------chHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceee
Confidence 00111333 567899999999999874 333344 222 111578
Q ss_pred cccCCCCCCcchh-----HHHHHHhhhcC
Q 001672 411 TVNGYEGTGRSLS-----LKLLHQLEQQS 434 (1033)
Q Consensus 411 TI~GYEGTGRgfs-----LKf~~~L~~~~ 434 (1033)
|..-|+.-++-|. -+.++.+....
T Consensus 206 sN~~~~~~~~~~~~~~~~e~~~dRi~~~~ 234 (254)
T COG1484 206 SNLSFGEWDELFGDDALTEALLDRILHHS 234 (254)
T ss_pred cCCChHHHHhhccCchhHHHHHHHHHhcc
Confidence 8888888888887 67888887655
No 98
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.63 E-value=0.032 Score=61.22 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CCeEEEecCChhhHHHHHHHHHhhccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---YSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g---~~nI~VTAPs~env~tlFef~~kgl~a 331 (1033)
|.+|.++|.. ...+++|.|+-|.|||++|---++.++..+ ..+|+|++++..+++.+-+-+...++.
T Consensus 2 ~~eQ~~~i~~---------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 2 TDEQRRIIRS---------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp -HHHHHHHHS----------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC---------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 6788887652 246899999999999999988888888765 458999999999999998888776553
No 99
>PRK01172 ski2-like helicase; Provisional
Probab=95.49 E-value=0.14 Score=63.97 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 334 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy 334 (1033)
.+.-|.+|+..+ .+ ...+++.|+.|.|||.+.-+++...+..| .++++.+|..+-+...++-+.+ |..+|.
T Consensus 23 l~~~Q~~ai~~l----~~---~~nvlv~apTGSGKTl~a~lail~~l~~~-~k~v~i~P~raLa~q~~~~~~~-l~~~g~ 93 (674)
T PRK01172 23 LYDHQRMAIEQL----RK---GENVIVSVPTAAGKTLIAYSAIYETFLAG-LKSIYIVPLRSLAMEKYEELSR-LRSLGM 93 (674)
T ss_pred CCHHHHHHHHHH----hc---CCcEEEECCCCchHHHHHHHHHHHHHHhC-CcEEEEechHHHHHHHHHHHHH-HhhcCC
Confidence 477899988754 22 23689999999999998888877766656 4666777999988888876553 333443
Q ss_pred cccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccc--------cccCCccEEEEecccCCC----HHHHHHhh-
Q 001672 335 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAIP----LPVVRSLL- 401 (1033)
Q Consensus 335 ~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~--------~~l~~adLLvIDEAAAIP----lplL~~Ll- 401 (1033)
+-. ..++ ++...... . .+..|-...|+.. ..+.+.+++|||||=.+. -+.+..++
T Consensus 94 ~v~------~~~G-~~~~~~~~---~--~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~ 161 (674)
T PRK01172 94 RVK------ISIG-DYDDPPDF---I--KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLS 161 (674)
T ss_pred eEE------EEeC-CCCCChhh---h--ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHH
Confidence 211 1111 00000000 0 0112344445321 113568999999998774 23333332
Q ss_pred -----cC--CeEEEEeccc
Q 001672 402 -----GP--YLVFLSSTVN 413 (1033)
Q Consensus 402 -----~~--y~V~lsSTI~ 413 (1033)
.+ ..|.||.|+.
T Consensus 162 ~~~~~~~~~riI~lSATl~ 180 (674)
T PRK01172 162 SARYVNPDARILALSATVS 180 (674)
T ss_pred HHHhcCcCCcEEEEeCccC
Confidence 22 3578899984
No 100
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=95.44 E-value=0.02 Score=58.61 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=25.6
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.-|-.+|||||||+.|+|+++|+.+..-..
T Consensus 66 gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar 95 (153)
T COG1246 66 GELRSLAVHPDYRGSGRGERLLERLLADAR 95 (153)
T ss_pred eeEEEEEECHHhcCCCcHHHHHHHHHHHHH
Confidence 466779999999999999999999876543
No 101
>PTZ00424 helicase 45; Provisional
Probab=95.42 E-value=0.16 Score=58.63 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCCeEEEecCChhhHHHHHHHHHhh
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKG 328 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~--g~~nI~VTAPs~env~tlFef~~kg 328 (1033)
.|.-|.+|+..+.+ + .-+++.|+-|.|||.+.-+++-..+.. ...+++|-+|+.+=+..+.+++..-
T Consensus 51 ~~~~Q~~ai~~i~~----~---~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 119 (401)
T PTZ00424 51 PSAIQQRGIKPILD----G---YDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLAL 119 (401)
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHH
Confidence 47889998876543 2 246799999999998877766655543 2347999999999888777665443
No 102
>PF13245 AAA_19: Part of AAA domain
Probab=95.28 E-value=0.058 Score=48.99 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=39.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCCeEEEecCChhhHHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~---g~~nI~VTAPs~env~tlFef~ 325 (1033)
.+.++|+|+.|.|||+++=-.++.+++. +..+|+|.||+...+..+.+-+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4578889999999996665566666643 1468999999999999998776
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.24 E-value=0.16 Score=48.22 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 314 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs 314 (1033)
|.+++..+...+... ..+.++|+|++|.|||+++-..+..+...++.-+++..+.
T Consensus 3 ~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 3 QEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred hHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 344444454444332 3458999999999999866554444443354445555443
No 104
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=95.24 E-value=0.075 Score=61.06 Aligned_cols=28 Identities=18% Similarity=0.029 Sum_probs=25.8
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 616 IVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 616 IVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
|-+|||+|+|||+|+|+++|+.|+++..
T Consensus 53 ik~vaV~~~~rG~Glg~~L~~~L~~~a~ 80 (332)
T TIGR00124 53 IKCVAIDESLRGEGLALQLMTELENLAY 80 (332)
T ss_pred EEEEEEcHHHcCCCHHHHHHHHHHHHHH
Confidence 7799999999999999999999998764
No 105
>PRK01346 hypothetical protein; Provisional
Probab=95.24 E-value=0.026 Score=65.77 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=29.0
Q ss_pred CcceEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 611 LSGARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 611 l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
....-|..++|||+|||+|+|+++|+.+.+.+.
T Consensus 77 ~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~ 109 (411)
T PRK01346 77 LPAAGVTAVTVAPTHRRRGLLTALMREQLRRIR 109 (411)
T ss_pred cceeEEEEEEEChhhcCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999887654
No 106
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=95.20 E-value=0.092 Score=51.95 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=51.9
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHH-hcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYY-EGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 691 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~-~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~ 691 (1033)
+.-++.+-+.|+||++|+|+.+++.+.+++ ...
T Consensus 76 ~~~~~~~~v~~~~~~~gig~~l~~~l~~~af~~~---------------------------------------------- 109 (155)
T PF13420_consen 76 HTAELSIYVSPDYRGKGIGRKLLDELIEYAFKEL---------------------------------------------- 109 (155)
T ss_dssp TEEEEEEEEEGGGTTSSHHHHHHHHHHHHH-HHT----------------------------------------------
T ss_pred CEEEEeeEEChhHCCCcHHHHHHHHHHHHhhhcc----------------------------------------------
Confidence 345566788899999999999999999887 321
Q ss_pred ccccCCCCcceEE-EecCCCHHHHHHHHHCCCeEEEeeecccCCCCcc
Q 001672 692 LRERQPEKLNYIG-VSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 738 (1033)
Q Consensus 692 l~e~~~~~~dylG-vSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEh 738 (1033)
+++.+- .-+.-+...++||++.||..+......-..-|++
T Consensus 110 -------~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~~~y 150 (155)
T PF13420_consen 110 -------GIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFINGKY 150 (155)
T ss_dssp -------T-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEETTEE
T ss_pred -------CeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEECCeE
Confidence 111111 2255589999999999999998776655555543
No 107
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=95.15 E-value=0.46 Score=46.95 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=48.4
Q ss_pred EeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCCC
Q 001672 619 IATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPE 698 (1033)
Q Consensus 619 IAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~~~ 698 (1033)
+.+.|+++ +|||+.+++.+.+|.... .
T Consensus 82 ~~~~~~~~-~G~g~~~~~~~~~~a~~~----------------------------------------------------~ 108 (156)
T TIGR03585 82 IYANPFCK-PGVGSVLEEAALEYAFEH----------------------------------------------------L 108 (156)
T ss_pred EEeChhhh-cCchHHHHHHHHHHHHhh----------------------------------------------------C
Confidence 45899999 999999999999874311 1
Q ss_pred CcceEEEe-cCCCHHHHHHHHHCCCeEEEeeecccCCCCcce
Q 001672 699 KLNYIGVS-FGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 739 (1033)
Q Consensus 699 ~~dylGvS-FG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS 739 (1033)
+++.+-+. .-.+....+|++|.||..+......-...|.+.
T Consensus 109 ~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~ 150 (156)
T TIGR03585 109 GLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYY 150 (156)
T ss_pred CeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEE
Confidence 12222221 344789999999999999887776655566654
No 108
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.14 E-value=0.17 Score=59.41 Aligned_cols=69 Identities=22% Similarity=0.071 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCCeEEEecCChhhHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA---------GYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~---------g~~nI~VTAPs~env~tlFef~ 325 (1033)
.|.-|.+|+-.++ .| +-+++.|+.|.|||.+--+++...+.. ....++|.+|+.+=+..+++.+
T Consensus 31 pt~iQ~~aip~il----~g---~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~ 103 (423)
T PRK04837 31 CTPIQALALPLTL----AG---RDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA 103 (423)
T ss_pred CCHHHHHHHHHHh----CC---CcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH
Confidence 3788999887544 22 358999999999999876666544421 1246999999999999887765
Q ss_pred Hhhcc
Q 001672 326 CKGFN 330 (1033)
Q Consensus 326 ~kgl~ 330 (1033)
..-..
T Consensus 104 ~~l~~ 108 (423)
T PRK04837 104 EPLAQ 108 (423)
T ss_pred HHHhc
Confidence 44333
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.12 E-value=0.12 Score=55.37 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh
Q 001672 275 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 315 (1033)
Q Consensus 275 ~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~ 315 (1033)
...+++|+|.+|.|||+++-.....+...|..-++|++.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 35689999999999999887666666667777788887553
No 110
>PRK08116 hypothetical protein; Validated
Probab=95.10 E-value=0.15 Score=56.75 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 314 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs 314 (1033)
...++|+|+.|.|||.++...+..++..|++-+++++|.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 346999999999999988866666666787767777554
No 111
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.10 E-value=0.088 Score=69.14 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHH-HHHHHHHHHHc-CCCeEEEecCChhhHHHHHH
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAA-LGLAIAGAIAA-GYSNIFVTAPSPENLKTLFE 323 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAa-LGlaiA~~i~~-g~~nI~VTAPs~env~tlFe 323 (1033)
..-.-|.+||.++.+++.++. + -.+|..+-|.|||-+ +++ +..++.. +..+|++.+|..+=+....+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~-r-~~Ll~maTGSGKT~tai~l-i~~L~~~~~~~rVLfLvDR~~L~~Qa~~ 481 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQ-R-EILLAMATGTGKTRTAIAL-MYRLLKAKRFRRILFLVDRSALGEQAED 481 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhcc-C-CeEEEeCCCCCHHHHHHHH-HHHHHhcCccCeEEEEecHHHHHHHHHH
Confidence 346689999999999887664 3 356779999999954 443 3444444 46799999999888777664
No 112
>PRK02362 ski2-like helicase; Provisional
Probab=95.04 E-value=0.19 Score=63.43 Aligned_cols=65 Identities=25% Similarity=0.188 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~ 326 (1033)
.+.-|.+|+... +.++ .-+++.|+.|.|||.+--+++...+..| .++++.+|..+=+...++...
T Consensus 24 l~p~Q~~ai~~~---~~~g---~nvlv~APTGSGKTlia~lail~~l~~~-~kal~i~P~raLa~q~~~~~~ 88 (737)
T PRK02362 24 LYPPQAEAVEAG---LLDG---KNLLAAIPTASGKTLIAELAMLKAIARG-GKALYIVPLRALASEKFEEFE 88 (737)
T ss_pred CCHHHHHHHHHH---HhCC---CcEEEECCCcchHHHHHHHHHHHHHhcC-CcEEEEeChHHHHHHHHHHHH
Confidence 467899988653 2232 3689999999999999988887777654 579999999999988887655
No 113
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=95.02 E-value=0.1 Score=53.32 Aligned_cols=70 Identities=14% Similarity=-0.037 Sum_probs=49.0
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccC
Q 001672 617 VRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQ 696 (1033)
Q Consensus 617 VRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~ 696 (1033)
+-+.++|+|||+|||+.+++.+.+|+....
T Consensus 96 ig~~i~~~~~g~G~~tea~~~l~~~~~~~~-------------------------------------------------- 125 (179)
T PRK10151 96 IGYWLDESHQGQGIISQALQALIHHYAQSG-------------------------------------------------- 125 (179)
T ss_pred EEEEEChhhcCCcHHHHHHHHHHHHHHhhC--------------------------------------------------
Confidence 345689999999999999999999864211
Q ss_pred CCCcceE-EEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcc
Q 001672 697 PEKLNYI-GVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 738 (1033)
Q Consensus 697 ~~~~dyl-GvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEh 738 (1033)
+++-+ ...+--+..-.++++|+||...-.....-...|++
T Consensus 126 --~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~~g~~ 166 (179)
T PRK10151 126 --ELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYLNGAY 166 (179)
T ss_pred --CccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEECCEE
Confidence 11111 22344578889999999999987765444445653
No 114
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=94.97 E-value=0.1 Score=54.11 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=54.3
Q ss_pred EEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccccc
Q 001672 616 IVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRER 695 (1033)
Q Consensus 616 IVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~ 695 (1033)
.+.+.++|+|+|+|||+.|++.+.+|.....
T Consensus 106 eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l------------------------------------------------- 136 (194)
T PRK10809 106 YLGYSLGQKWQGQGLMFEALQAAIRYMQRQQ------------------------------------------------- 136 (194)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 4567889999999999999999999864221
Q ss_pred CCCCcc-eEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcc--eEEEE
Q 001672 696 QPEKLN-YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH--TCMVL 743 (1033)
Q Consensus 696 ~~~~~d-ylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEh--S~iml 743 (1033)
+++ ....-+--+..-.++++|+||..+.+....-...|++ .++|-
T Consensus 137 ---~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~~~~~~~g~~~d~~~~~ 184 (194)
T PRK10809 137 ---HMHRIMANYMPHNKRSGDLLARLGFEKEGYAKDYLLIDGQWRDHVLTA 184 (194)
T ss_pred ---CceEEEEEeeCCCHHHHHHHHHCCCcEEeeeccccccCCeEEEEEEee
Confidence 111 1222344578889999999999888776655556754 44443
No 115
>PRK00254 ski2-like helicase; Provisional
Probab=94.90 E-value=0.1 Score=65.64 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
+.-|.+|+...+ .+ .+-++++|+.|.|||.+--+++...+...-.++++.+|..+-+...++.+.. +..+|.+
T Consensus 25 ~~~Q~~ai~~~~---~~---g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~-~~~~g~~ 97 (720)
T PRK00254 25 YPPQAEALKSGV---LE---GKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD-WEKLGLR 97 (720)
T ss_pred CHHHHHHHHHHH---hC---CCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH-HhhcCCE
Confidence 667999886532 22 2468999999999999998887765543335788889999998888866543 3333332
Q ss_pred ccccccccccCCCCCCcceEEEeeeeccceEEEEeCCcccc--------ccCCccEEEEecccCCCH----HHHHHhhc-
Q 001672 336 EHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIPL----PVVRSLLG- 402 (1033)
Q Consensus 336 e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~--------~l~~adLLvIDEAAAIPl----plL~~Ll~- 402 (1033)
+...++ ++...... . ....|-...|.-+. .+...+++|||||=.+.- +.+..++.
T Consensus 98 ------v~~~~G-d~~~~~~~---~--~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~ 165 (720)
T PRK00254 98 ------VAMTTG-DYDSTDEW---L--GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTH 165 (720)
T ss_pred ------EEEEeC-CCCCchhh---h--ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHh
Confidence 111111 00000000 0 01112233333211 134679999999977742 34444442
Q ss_pred ----CCeEEEEecccC
Q 001672 403 ----PYLVFLSSTVNG 414 (1033)
Q Consensus 403 ----~y~V~lsSTI~G 414 (1033)
+..|.||.|+.-
T Consensus 166 l~~~~qiI~lSATl~n 181 (720)
T PRK00254 166 MLGRAQILGLSATVGN 181 (720)
T ss_pred cCcCCcEEEEEccCCC
Confidence 236788999843
No 116
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=94.89 E-value=0.087 Score=43.57 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=40.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 905 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl 905 (1033)
.|++.|..|+.....+++|+.+||+.+|++...+-...++++++|
T Consensus 4 ~L~~~er~vi~~~y~~~~t~~eIa~~lg~s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEGLTLEEIAERLGISRSTVRRILKRALKKL 48 (50)
T ss_dssp TS-HHHHHHHHHHHTST-SHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCCCCHHHHHHHHCCcHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999887
No 117
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.80 E-value=0.093 Score=62.59 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---------CCeEEEecCChhhHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---------YSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g---------~~nI~VTAPs~env~tlFef~ 325 (1033)
.|.-|++|+-.+. .| +-++++|..|.|||.+--+.+...+... -..++|-+|+.+=+...++-+
T Consensus 110 ~~~iQ~~ai~~~~----~G---~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~ 182 (475)
T PRK01297 110 CTPIQAQVLGYTL----AG---HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDA 182 (475)
T ss_pred CCHHHHHHHHHHh----CC---CCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 3788999886443 33 3478999999999988877776655432 346899999999998887665
Q ss_pred HhhcccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCcccc--------ccCCccEEEEecccCCC----
Q 001672 326 CKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIP---- 393 (1033)
Q Consensus 326 ~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~--------~l~~adLLvIDEAAAIP---- 393 (1033)
..-...+|..-.. .. .+.++...+ ..+......|-+..|+-+. .+...++||||||=.+-
T Consensus 183 ~~l~~~~~~~v~~----~~-gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~ 254 (475)
T PRK01297 183 AALTKYTGLNVMT----FV-GGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGF 254 (475)
T ss_pred HHhhccCCCEEEE----EE-ccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhccc
Confidence 4333222221100 00 000000000 0000112235556665442 13457899999997653
Q ss_pred HHHHHHhhcC-------CeEEEEecc
Q 001672 394 LPVVRSLLGP-------YLVFLSSTV 412 (1033)
Q Consensus 394 lplL~~Ll~~-------y~V~lsSTI 412 (1033)
.+.++.++.. ..++||.|+
T Consensus 255 ~~~l~~i~~~~~~~~~~q~i~~SAT~ 280 (475)
T PRK01297 255 IPQVRQIIRQTPRKEERQTLLFSATF 280 (475)
T ss_pred HHHHHHHHHhCCCCCCceEEEEEeec
Confidence 2445555532 246778885
No 118
>PRK06921 hypothetical protein; Provisional
Probab=94.69 E-value=0.15 Score=56.72 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCCeEEEecC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAP 313 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g~~nI~VTAP 313 (1033)
...++|+|+.|.|||.++--.+..++.. |++-+++|++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV 155 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH
Confidence 4579999999999999885444445555 8877899974
No 119
>PRK09401 reverse gyrase; Reviewed
Probab=94.68 E-value=0.29 Score=64.72 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhc
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
-.|.-|..++-.++ . .+-+++.|+.|.|||+ .|+.++..+.....+++|-+|+.+=+..+++-+.+-.
T Consensus 80 ~pt~iQ~~~i~~il----~---g~dv~i~ApTGsGKT~-f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 80 KPWSLQRTWAKRLL----L---GESFAIIAPTGVGKTT-FGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred CCcHHHHHHHHHHH----C---CCcEEEEcCCCCCHHH-HHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 35778988776543 2 2468899999999996 6776666555444689999999999988887765543
No 120
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.47 E-value=0.063 Score=65.81 Aligned_cols=71 Identities=21% Similarity=0.131 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---------CCeEEEecCChhhHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---------YSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g---------~~nI~VTAPs~env~tlFef~ 325 (1033)
.|.-|++++-.++ ++ +-+++.|.-|.|||.+.-+++...+... ...++|.+|+.+-+..+++-+
T Consensus 32 ptpiQ~~~ip~~l----~G---~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~ 104 (572)
T PRK04537 32 CTPIQALTLPVAL----PG---GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA 104 (572)
T ss_pred CCHHHHHHHHHHh----CC---CCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 4788999887544 22 3589999999999999888776655321 247999999999998888776
Q ss_pred Hhhcccc
Q 001672 326 CKGFNAI 332 (1033)
Q Consensus 326 ~kgl~aL 332 (1033)
.+-...+
T Consensus 105 ~~l~~~~ 111 (572)
T PRK04537 105 VKFGADL 111 (572)
T ss_pred HHHhccC
Confidence 5543333
No 121
>PTZ00110 helicase; Provisional
Probab=94.46 E-value=0.11 Score=63.39 Aligned_cols=142 Identities=25% Similarity=0.235 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH-Hc-----C-CCeEEEecCChhhHHHHHHHHHh
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI-AA-----G-YSNIFVTAPSPENLKTLFEFVCK 327 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i-~~-----g-~~nI~VTAPs~env~tlFef~~k 327 (1033)
.|.-|++++-.++ .+ +-++++|+-|.|||.+--|.+...+ .. + -..++|.+|+.|=+..+++.+.+
T Consensus 153 pt~iQ~~aip~~l----~G---~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~ 225 (545)
T PTZ00110 153 PTPIQVQGWPIAL----SG---RDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNK 225 (545)
T ss_pred CCHHHHHHHHHHh----cC---CCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHH
Confidence 3788999886543 22 3578999999999988655443322 21 1 13589999999999888877654
Q ss_pred hcccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccc--------cccCCccEEEEecccCCC----HH
Q 001672 328 GFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAIP----LP 395 (1033)
Q Consensus 328 gl~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~--------~~l~~adLLvIDEAAAIP----lp 395 (1033)
-....+.+... +....+. ...+ ..+ .....|-...|.-+ ..+...++||||||=.+- .+
T Consensus 226 ~~~~~~i~~~~----~~gg~~~-~~q~---~~l-~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~ 296 (545)
T PTZ00110 226 FGASSKIRNTV----AYGGVPK-RGQI---YAL-RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEP 296 (545)
T ss_pred HhcccCccEEE----EeCCCCH-HHHH---HHH-HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHH
Confidence 32222211100 0000000 0000 000 00123445556422 124568999999996433 34
Q ss_pred HHHHhhc---CC--eEEEEecc
Q 001672 396 VVRSLLG---PY--LVFLSSTV 412 (1033)
Q Consensus 396 lL~~Ll~---~y--~V~lsSTI 412 (1033)
.+++++. +. .++||.|.
T Consensus 297 ~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 297 QIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred HHHHHHHhCCCCCeEEEEEeCC
Confidence 4555653 22 47788885
No 122
>PRK05642 DNA replication initiation factor; Validated
Probab=94.42 E-value=0.24 Score=53.85 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=28.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 277 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
.+++|.|++|.|||.++--++..+...|..-+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 5899999999999999765544455567766788875
No 123
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.40 E-value=0.27 Score=53.01 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
+|..|..++..+.+ ...++++|+-|.|||-+.--+++.++..| |.+|++|-|..+.-+.+- |+--.++. .
T Consensus 5 ~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lG-flpG~~~e-K 75 (205)
T PF02562_consen 5 KNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLG-FLPGDLEE-K 75 (205)
T ss_dssp -SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT-----SS--------
T ss_pred CCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccc-cCCCCHHH-H
Confidence 58899998876652 34899999999999964433333344444 889999999876422210 10000000 0
Q ss_pred cccccc--ccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc--cCCccEEEEecccCCCHHHHHHhhc
Q 001672 334 YKEHID--YDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK--LAQVELLVIDEAAAIPLPVVRSLLG 402 (1033)
Q Consensus 334 y~e~~d--y~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~--l~~adLLvIDEAAAIPlplL~~Ll~ 402 (1033)
+..+.. |+....-.+ ...+.. .-.+..|++.++.-+-- +. -.++|||||==+....++.++-
T Consensus 76 ~~p~~~p~~d~l~~~~~--~~~~~~----~~~~~~Ie~~~~~~iRGrt~~-~~~iIvDEaQN~t~~~~k~ilT 141 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFG--KEKLEE----LIQNGKIEIEPLAFIRGRTFD-NAFIIVDEAQNLTPEELKMILT 141 (205)
T ss_dssp --TTTHHHHHHHTTTS---TTCHHH----HHHTTSEEEEEGGGGTT--B--SEEEEE-SGGG--HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC--hHhHHH----HhhcCeEEEEehhhhcCcccc-ceEEEEecccCCCHHHHHHHHc
Confidence 000000 011111000 000000 01133467766654421 32 4799999999999999999993
No 124
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=94.25 E-value=0.32 Score=58.98 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCCeEEEecCChhhHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA---------GYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~---------g~~nI~VTAPs~env~tlFef~ 325 (1033)
.|.-|.+|+-.++ .| +-++++|+.|.|||.+--+.+-..+.. ....++|.+|+.+=+..+.+.+
T Consensus 144 ptpiQ~~aip~il----~g---~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~ 216 (518)
T PLN00206 144 PTPIQMQAIPAAL----SG---RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA 216 (518)
T ss_pred CCHHHHHHHHHHh----cC---CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 4788999987554 22 368999999999998876655433321 1236899999999988777665
Q ss_pred HhhcccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccc--------cccCCccEEEEecccCCC----
Q 001672 326 CKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH--------EKLAQVELLVIDEAAAIP---- 393 (1033)
Q Consensus 326 ~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~--------~~l~~adLLvIDEAAAIP---- 393 (1033)
..-...++++.. .+....+ ....+.++ + .+..|-...|.-+ ..+....+||||||=.+.
T Consensus 217 ~~l~~~~~~~~~----~~~gG~~-~~~q~~~l---~-~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf 287 (518)
T PLN00206 217 KVLGKGLPFKTA----LVVGGDA-MPQQLYRI---Q-QGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGF 287 (518)
T ss_pred HHHhCCCCceEE----EEECCcc-hHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcch
Confidence 443322222210 0010000 00000000 0 0112344445432 124567899999996542
Q ss_pred HHHHHHhh----cCCeEEEEeccc
Q 001672 394 LPVVRSLL----GPYLVFLSSTVN 413 (1033)
Q Consensus 394 lplL~~Ll----~~y~V~lsSTI~ 413 (1033)
-+.+.+++ .+..++||.|+.
T Consensus 288 ~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 288 RDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeCC
Confidence 23344444 244688899974
No 125
>PRK08727 hypothetical protein; Validated
Probab=94.23 E-value=0.21 Score=54.21 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEec
Q 001672 275 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 312 (1033)
Q Consensus 275 ~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTA 312 (1033)
...+++|+|+.|.|||.++--.+..+...|++-+++++
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 34579999999999999888666667777876678874
No 126
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.21 E-value=0.096 Score=54.84 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
..-++|+|+.|+|||.+.--.+-.++..|++=+|+++|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 35799999999999998665555677789988899875
No 127
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=94.17 E-value=0.13 Score=42.90 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=37.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 905 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl 905 (1033)
.|++.+..++...-+++.|+.+||+.+|++.+.+...+.++.+++
T Consensus 10 ~L~~~~r~i~~l~~~~g~s~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 10 QLPERQREIFLLRYFQGMSYAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp CS-HHHHHHHHHHHTS---HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 589999999999999999999999999999999999999998875
No 128
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.13 E-value=0.31 Score=45.47 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKT 320 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~t 320 (1033)
...++|+|+.|.|||+++-..+..+-..+ ..++..+++......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 34789999999999998854433332222 135555555444333
No 129
>PRK14974 cell division protein FtsY; Provisional
Probab=94.08 E-value=0.42 Score=55.13 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC---hhhHHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS---PENLKTLFEFV 325 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs---~env~tlFef~ 325 (1033)
...++++|..|-|||+++.-.+..+...|+ +|.+.+.+ ..+...+..++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecCCcCcHHHHHHHHHHH
Confidence 468999999999999999987776666676 55444444 44555554444
No 130
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=94.08 E-value=0.21 Score=61.76 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
+.-|.+++..++ ++ +-++++|+.|-|||.+-= +.+++..| .++|.+|..+=+.... ..|..+|..
T Consensus 27 r~~Q~~ai~~il----~g---~dvlv~apTGsGKTl~y~--lpal~~~g--~tlVisPl~sL~~dqv----~~l~~~gi~ 91 (607)
T PRK11057 27 RPGQQEIIDAVL----SG---RDCLVVMPTGGGKSLCYQ--IPALVLDG--LTLVVSPLISLMKDQV----DQLLANGVA 91 (607)
T ss_pred CHHHHHHHHHHH----cC---CCEEEEcCCCchHHHHHH--HHHHHcCC--CEEEEecHHHHHHHHH----HHHHHcCCc
Confidence 568999887554 22 357889999999996532 23333333 5788899766544322 222223321
Q ss_pred ccccccccccCCC-CCCcceEEEeeeeccceEEEEeCCccccc--------cCCccEEEEecccCCC
Q 001672 336 EHIDYDIVRSSNP-DLRKPIVRINIYRQHRQTIQYMEPHEHEK--------LAQVELLVIDEAAAIP 393 (1033)
Q Consensus 336 e~~dy~i~~s~~p-~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~--------l~~adLLvIDEAAAIP 393 (1033)
. ..+.++.. +....+ ....+.+...|-|+.|+.+.. ....+++|||||=.|+
T Consensus 92 ~----~~~~s~~~~~~~~~~--~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 92 A----ACLNSTQTREQQLEV--MAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred E----EEEcCCCCHHHHHHH--HHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc
Confidence 1 11111110 000000 001123344678899986541 1357899999998886
No 131
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=94.07 E-value=0.11 Score=68.63 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~a 331 (1033)
.|.-|+.++..++ . .+.++++|+.|.|||+ .|+.++..++..-..++|-+|+.+-+..+++-+.+-.+.
T Consensus 79 p~~iQ~~~i~~il----~---G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 79 PWSIQKMWAKRVL----R---GDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred CcHHHHHHHHHHh----C---CCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 4778988776544 2 2468899999999997 667666655443357999999999999888776654443
No 132
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=93.99 E-value=0.25 Score=60.72 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
+..|.+|+..++ +| +-+++.|+.|-|||.+-= +.+++..| .++|.+|..+-++.-.+. |.++|..
T Consensus 15 r~~Q~~~i~~il----~g---~dvlv~~PTG~GKTl~y~--lpal~~~g--~~lVisPl~sL~~dq~~~----l~~~gi~ 79 (591)
T TIGR01389 15 RPGQEEIISHVL----DG---RDVLVVMPTGGGKSLCYQ--VPALLLKG--LTVVISPLISLMKDQVDQ----LRAAGVA 79 (591)
T ss_pred CHHHHHHHHHHH----cC---CCEEEEcCCCccHhHHHH--HHHHHcCC--cEEEEcCCHHHHHHHHHH----HHHcCCc
Confidence 567999887554 33 257889999999998752 33344334 467779998776644332 2223321
Q ss_pred ccccccccccCCC-CCCcceEEEeeeeccceEEEEeCCccccc--------cCCccEEEEecccCCC
Q 001672 336 EHIDYDIVRSSNP-DLRKPIVRINIYRQHRQTIQYMEPHEHEK--------LAQVELLVIDEAAAIP 393 (1033)
Q Consensus 336 e~~dy~i~~s~~p-~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~--------l~~adLLvIDEAAAIP 393 (1033)
.. .+.++.. +-...+ ..........|-|+.|+.+.. ....+++|||||=.|+
T Consensus 80 ~~----~~~s~~~~~~~~~~--~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~ 140 (591)
T TIGR01389 80 AA----YLNSTLSAKEQQDI--EKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS 140 (591)
T ss_pred EE----EEeCCCCHHHHHHH--HHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc
Confidence 10 0001000 000000 000112234577888887632 2357899999999886
No 133
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=93.94 E-value=0.17 Score=51.02 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=46.3
Q ss_pred CCeEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHhhhcCCCCCCCcceEEEEEeeC
Q 001672 543 AHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATH 622 (1033)
Q Consensus 543 ~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIP~~ls~q~~d~~f~~l~g~RIVRIAvh 622 (1033)
.+.+.|+..+. ..+|+|++-+..|-.+=.+ -- +.-||--++||
T Consensus 52 ~Y~i~Vied~~------s~~vigtatL~IE~KfIh~---------~g----------------------~rGhiEDVVV~ 94 (150)
T KOG3396|consen 52 WYYIVVIEDKE------SEKVIGTATLFIERKFIHG---------CG----------------------SRGHIEDVVVD 94 (150)
T ss_pred cEEEEEEEeCC------cCeEEEEEEEEEehhhhhc---------cc----------------------ccCceeEEEeC
Confidence 38888886431 2479999999988543221 11 23489999999
Q ss_pred cccccCChHHHHHHHHHHH
Q 001672 623 PSAMRLGYGSTAVELLTRY 641 (1033)
Q Consensus 623 Pd~q~~GyGsraL~~L~~~ 641 (1033)
++|||+|+|..+++.|.+-
T Consensus 95 ~~~rgk~LGkllv~~Lv~l 113 (150)
T KOG3396|consen 95 SEYRGKQLGKLLVETLVDL 113 (150)
T ss_pred hhhhhhHHhHHHHHHHHHH
Confidence 9999999999999998864
No 134
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.78 E-value=0.28 Score=60.11 Aligned_cols=299 Identities=19% Similarity=0.259 Sum_probs=161.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCe---EEEecCChhhHHHHHHHHHhhc-----ccccccccccccccccCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSN---IFVTAPSPENLKTLFEFVCKGF-----NAIEYKEHIDYDIVRSSN 347 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~n---I~VTAPs~env~tlFef~~kgl-----~aLgy~e~~dy~i~~s~~ 347 (1033)
+.+|+|.+..|.|||+-|- -.+..-||.+ |-+|-|..-++-++-.-+...+ ++.||. +.|+=+-
T Consensus 371 n~vvvivgETGSGKTTQl~---QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs--IRFEdvT--- 442 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLA---QYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS--IRFEDVT--- 442 (1042)
T ss_pred CcEEEEEecCCCCchhhhH---HHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceE--EEeeecC---
Confidence 5799999999999999872 3455557754 9999999999988887776655 223443 2333222
Q ss_pred CCCCcceEEEeeeeccceEEEEeCCcccc-------ccCCccEEEEecccC------CCHHHHHHhhcCC----eEEEEe
Q 001672 348 PDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAAA------IPLPVVRSLLGPY----LVFLSS 410 (1033)
Q Consensus 348 p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~-------~l~~adLLvIDEAAA------IPlplL~~Ll~~y----~V~lsS 410 (1033)
+..-.|.|+.---++ .+....++|+|||-- |-.-+|+..+... +++.|.
T Consensus 443 --------------~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSA 508 (1042)
T KOG0924|consen 443 --------------SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSA 508 (1042)
T ss_pred --------------CCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeec
Confidence 223357888765442 134678999999953 3334455555322 578898
Q ss_pred cccCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccCCCCcHHHHHHHhccCCCCCCCCC----C
Q 001672 411 TVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPH----I 486 (1033)
Q Consensus 411 TI~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~gDPlE~WL~~lL~LDa~~~~~~----~ 486 (1033)
|++- -||....- ..|+..-. +....+.-+...+|. .|-||+-+-+.+-.--..++.. .
T Consensus 509 Tm~a---------~kf~nfFg-n~p~f~Ip----GRTyPV~~~~~k~p~----eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 509 TMDA---------QKFSNFFG-NCPQFTIP----GRTYPVEIMYTKTPV----EDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred cccH---------HHHHHHhC-CCceeeec----CCccceEEEeccCch----HHHHHHHHhhheEeeccCCCCCEEEec
Confidence 9873 45555542 11110000 001223344444443 4666666666654322111110 1
Q ss_pred CCCCCCCccceeeeCcccccccCcCcHHHHHHHH----HHHHhcccCCChhHHHHhh--cCCCC-eEEEEecCCcccCCC
Q 001672 487 NRLPPPSECDLYYVNRDTLFSYHKESELFLQRMM----ALYVSSHYKNSPNDLQLMA--DAPAH-HLFVLLGPVDESKNQ 559 (1033)
Q Consensus 487 ~~~p~p~~c~l~~Vnrd~Lfs~h~~sE~fLqq~~----~LlV~AHYknsPnDLqlLl--DaP~h-~lfvL~~p~~~~~~~ 559 (1033)
.|. .+-+|... ...|.+.|-.+ .|-|.--|--=|.|||.=. ++|.- +=.++...+.++.-+
T Consensus 571 tGq-ediE~t~~-----------~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLT 638 (1042)
T KOG0924|consen 571 TGQ-EDIECTCD-----------IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLT 638 (1042)
T ss_pred CCC-cchhHHHH-----------HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhcee
Confidence 111 11122111 01233333222 4566667888999999643 24432 333344455566667
Q ss_pred CCCeEEEEEeee---------cC-------CCCHHHHHHHHhc-CCCCCCCchhHHHH-h-hhcCCCCCCCcceEEEEEe
Q 001672 560 LPDILCVIQVCL---------EG-------QISRRSVLKSFSE-GHQPSGDQIPWKFS-E-QFRDAVFPSLSGARIVRIA 620 (1033)
Q Consensus 560 lp~il~viqva~---------EG-------~is~~~i~~~l~~-G~Rp~GdLIP~~ls-~-q~~d~~f~~l~g~RIVRIA 620 (1033)
+|.|.|||-.-+ -| .||+..+.+--.| |+...|- -.++- + .|-++-+ -+
T Consensus 639 i~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~--cYRlYTe~ay~~eml----------~s 706 (1042)
T KOG0924|consen 639 IPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGT--CYRLYTEDAYKNEML----------PS 706 (1042)
T ss_pred ecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcc--eeeehhhhHHHhhcc----------cC
Confidence 888998875432 12 4666554332111 2333342 22221 1 1222222 27
Q ss_pred eCcccccCChHHHHHHHH
Q 001672 621 THPSAMRLGYGSTAVELL 638 (1033)
Q Consensus 621 vhPd~q~~GyGsraL~~L 638 (1033)
+-|+.||-.++.-.|.++
T Consensus 707 tvPEIqRTNl~nvVLlLk 724 (1042)
T KOG0924|consen 707 TVPEIQRTNLSNVVLLLK 724 (1042)
T ss_pred CCchhhhcchhhHHHHHH
Confidence 889999999999887654
No 135
>PF13173 AAA_14: AAA domain
Probab=93.78 E-value=0.31 Score=47.69 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=30.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL 318 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env 318 (1033)
++.++|+|+||.|||+++=-.+.... ....-++|.--++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~ 43 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDR 43 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHH
Confidence 45899999999999999877666554 2223366766666663
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.73 E-value=0.48 Score=53.14 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 314 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs 314 (1033)
|..+...+...+..++....++++|++|.|||+++-.. +.. .+..-+.+++.+
T Consensus 26 ~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l-~~~--~~~~~~~i~~~~ 78 (316)
T PHA02544 26 PAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL-CNE--VGAEVLFVNGSD 78 (316)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHH-HHH--hCccceEeccCc
Confidence 33334445555556655667778999999999975432 222 243334555544
No 137
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=93.57 E-value=0.11 Score=53.64 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=30.1
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHhccc
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQL 646 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~ 646 (1033)
..-|-+.||.++|||+|+|+.+++..+++...+.
T Consensus 84 rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g 117 (165)
T KOG3139|consen 84 RGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRG 117 (165)
T ss_pred eEEEEEEEechhhccccHHHHHHHHHHHHHHHCC
Confidence 3579999999999999999999999999987544
No 138
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.55 E-value=1 Score=54.73 Aligned_cols=151 Identities=18% Similarity=0.131 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhcccCC---cEEEEEeCCCCCHHHHHH-HHHHHHHH--cCCCeEEEecCChhhHHHHHHHHHhhccc
Q 001672 258 DQGKAVITFLDAILDKTLR---STVALLAARGRGKSAALG-LAIAGAIA--AGYSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r---~~vvLTA~RGRGKSAaLG-laiA~~i~--~g~~nI~VTAPs~env~tlFef~~kgl~a 331 (1033)
=|.=++..+.-..-..|.. +...|.=+||-|||+.+- |+.+.++- .+-..|.|.|||.+..+++|.++.--+..
T Consensus 65 wQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~mv~~ 144 (546)
T COG4626 65 WQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDMVKR 144 (546)
T ss_pred HHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHHHHh
Confidence 4555554444222222322 267888999999999875 66555443 22357999999999999999998655443
Q ss_pred ccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc-cCCccEEEEecccCCCHH--HHHHhh---cCC-
Q 001672 332 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-LAQVELLVIDEAAAIPLP--VVRSLL---GPY- 404 (1033)
Q Consensus 332 Lgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~-l~~adLLvIDEAAAIPlp--lL~~Ll---~~y- 404 (1033)
.. +..+...- ..-.+..+++.....|.+++-+.-.. -..+-+.||||-=.-+-+ ++..+. +.+
T Consensus 145 ~~-----~l~~~~~~-----q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~~~~~~g~~ar~ 214 (546)
T COG4626 145 DD-----DLRDLCNV-----QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMYSEAKGGLGARP 214 (546)
T ss_pred Cc-----chhhhhcc-----ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHHHHHHhhhccCc
Confidence 32 11110000 01112244566677888888875433 235789999999888885 444444 233
Q ss_pred --eEEEEecccCCCCCC
Q 001672 405 --LVFLSSTVNGYEGTG 419 (1033)
Q Consensus 405 --~V~lsSTI~GYEGTG 419 (1033)
++|+-|| .||--.|
T Consensus 215 ~~l~~~ITT-~g~~~~g 230 (546)
T COG4626 215 EGLVVYITT-SGDPPAG 230 (546)
T ss_pred CceEEEEec-CCCCCcc
Confidence 6887888 9986555
No 139
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=93.54 E-value=0.13 Score=52.28 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=25.8
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
++|=|.+|.|++||+|+|.++|+.-.+...
T Consensus 77 ~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~ 106 (155)
T COG2153 77 VSIGRVIVSPAARGQGLGQQLMEKALETAG 106 (155)
T ss_pred eeeeeEEECHhhhccchhHHHHHHHHHHHH
Confidence 459999999999999999999988766543
No 140
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=93.49 E-value=0.24 Score=51.45 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c---CCCeEEEecCChhhHHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-A---GYSNIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~-~---g~~nI~VTAPs~env~tlFef~~ 326 (1033)
+.-|.+++..+.. + +-+++.|+-|.|||...=+++...+. . +..+++|.+|+.+-+....+.+.
T Consensus 23 ~~~Q~~~~~~~~~----~---~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~ 90 (203)
T cd00268 23 TPIQARAIPPLLS----G---RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVAR 90 (203)
T ss_pred CHHHHHHHHHHhc----C---CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHH
Confidence 5679998876653 2 35799999999999764333333332 2 23468888999988887766543
No 141
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.43 E-value=0.28 Score=58.09 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=48.6
Q ss_pred CcEEEEEeCCCCCHH-HHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcce
Q 001672 276 RSTVALLAARGRGKS-AALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPI 354 (1033)
Q Consensus 276 r~~vvLTA~RGRGKS-AaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai 354 (1033)
+.-+++.|+||.||| -+.+++..+++..| ..-++..||.-+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---------~f~T~a~Lf~~L~~~~------------------------- 254 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---------GTITVAKLFYNISTRQ------------------------- 254 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------CcCcHHHHHHHHHHHH-------------------------
Confidence 457999999999999 66666677666666 3334556665443210
Q ss_pred EEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhh
Q 001672 355 VRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL 401 (1033)
Q Consensus 355 ~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll 401 (1033)
+..+..+|+||+||.+-+|..--+.++
T Consensus 255 --------------------lg~v~~~DlLI~DEvgylp~~~~~~~v 281 (449)
T TIGR02688 255 --------------------IGLVGRWDVVAFDEVATLKFAKPKELI 281 (449)
T ss_pred --------------------HhhhccCCEEEEEcCCCCcCCchHHHH
Confidence 112346899999999999987555443
No 142
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=93.37 E-value=0.83 Score=57.95 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhHHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env~tlFef~~ 326 (1033)
.|.-|++|+..+. +| +-++++|+.|.|||.|-.|.+-..+..+ ...++|-+|+.+=+...++-+.
T Consensus 37 p~~~Q~~ai~~il----~G---~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~ 102 (742)
T TIGR03817 37 PWQHQARAAELAH----AG---RHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVR 102 (742)
T ss_pred CCHHHHHHHHHHH----CC---CCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHH
Confidence 4788999887543 33 3589999999999999998887766543 3578999999988776665543
No 143
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.37 E-value=0.18 Score=57.39 Aligned_cols=41 Identities=32% Similarity=0.461 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL 318 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env 318 (1033)
..-++|+|+||.|||.+|--+++.|...|. |++.-|+..+.
T Consensus 23 ~~r~vL~G~~GsGKS~~L~q~~~~A~~~~w--iVl~vp~a~~~ 63 (309)
T PF10236_consen 23 NNRYVLTGERGSGKSVLLAQAVHYARENGW--IVLYVPSAQDW 63 (309)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCE--EEEEcCCHHHH
Confidence 446899999999999999999999888764 99999998876
No 144
>PRK06526 transposase; Provisional
Probab=93.36 E-value=0.21 Score=55.23 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
+..++|+|+.|.|||.+.--.+..++..|++-+|+|++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~ 135 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH
Confidence 34689999999999987654444456678866676664
No 145
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=93.32 E-value=0.11 Score=55.12 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=55.7
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 693 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~ 693 (1033)
.-|.-++|+|+||+.|+||.+|+.+.+|..+...
T Consensus 90 ~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~---------------------------------------------- 123 (187)
T KOG3138|consen 90 IYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQ---------------------------------------------- 123 (187)
T ss_pred eEEEeecccHHHHhcchHHHHHHHHHHHHhcccc----------------------------------------------
Confidence 5699999999999999999999999998753210
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcce
Q 001672 694 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHT 739 (1033)
Q Consensus 694 e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS 739 (1033)
.+.-.++-+-+ +.....||++.||.+|.........+|-+-
T Consensus 124 -~~~v~lHv~~~----n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~ 164 (187)
T KOG3138|consen 124 -CRRVYLHVQAV----NESAIEFYEKRGFEIVERLKNYYSILGPPD 164 (187)
T ss_pred -cceEEEEEEeC----CCcHHHHHHhcCceEeeccccccccccCcc
Confidence 00112222222 578899999999999998887776665443
No 146
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=93.24 E-value=0.23 Score=56.58 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=39.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHH-cCCCeEEEecCChhhHHHHHHHHHhhcc
Q 001672 279 VALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENLKTLFEFVCKGFN 330 (1033)
Q Consensus 279 vvLTA~RGRGKSAaLGlaiA~~i~-~g~~nI~VTAPs~env~tlFef~~kgl~ 330 (1033)
++|+|+-|.|||.+-=+++...+. ....+|++++|..+-+..+++.+..-|.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~ 54 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFG 54 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhC
Confidence 789999999999985554444443 3456899999999999888887665443
No 147
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.21 E-value=0.17 Score=58.18 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC
Q 001672 266 FLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 314 (1033)
Q Consensus 266 ~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs 314 (1033)
|++.+... ...++|.|+.|.|||.++--.+..++..|++=+++|++.
T Consensus 175 f~~~f~~~--~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 175 FIENFDKN--NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred HHHHHhcc--CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 55544333 357999999999999977654555677788878999875
No 148
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.20 E-value=0.46 Score=58.18 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=83.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcce
Q 001672 277 STVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPI 354 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i~~--g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai 354 (1033)
+.-|-.-+|--|||--+.-.||.+++. | -+|-.||=-....+.+|+=+...+... |.. +|. +...+ ..
T Consensus 203 kaTVFLVPRRHGKTWf~VpiIsllL~s~~g-I~IGYvAHqKhvs~~Vf~EI~~~lrrw-F~~--~~v-i~~k~-----~t 272 (668)
T PHA03372 203 KATVFLVPRRHGKTWFIIPIISFLLKNIIG-ISIGYVAHQKHVSQFVLKEVEFRCRRM-FPR--KHT-IENKD-----NV 272 (668)
T ss_pred cceEEEecccCCceehHHHHHHHHHHhhcC-ceEEEEeeHHHHHHHHHHHHHHHHhhh-cCc--cce-eeecC-----cE
Confidence 345677899999999999999999873 4 479999999999999997765444321 110 111 11111 11
Q ss_pred EEEeeeeccceEEEEeCCcccc--ccCCccEEEEecccCCCHHHHHHhhcC------CeEEEEecccCCC
Q 001672 355 VRINIYRQHRQTIQYMEPHEHE--KLAQVELLVIDEAAAIPLPVVRSLLGP------YLVFLSSTVNGYE 416 (1033)
Q Consensus 355 ~ri~~~~~h~q~Iqyi~Pd~~~--~l~~adLLvIDEAAAIPlplL~~Ll~~------y~V~lsSTI~GYE 416 (1033)
+-+ .+.+.+.++-|.+=.... +-...+||+||||+=|+.+.+..++|- -.+|.|||..|=-
T Consensus 273 I~~-s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~Nsg~~ 341 (668)
T PHA03372 273 ISI-DHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTNTTND 341 (668)
T ss_pred EEE-ecCCCcceeeehhhccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCCCCCc
Confidence 111 123445566664423222 223589999999999999999999962 2577788865543
No 149
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=93.01 E-value=0.29 Score=47.25 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=25.6
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+. +.+.++|+|+|+|||+.++.++.+|+-
T Consensus 85 ~e-ig~~i~~~~~g~G~~~~~~~~~~~~~~ 113 (142)
T PF13302_consen 85 AE-IGYWIGPDYRGKGYGTEALKLLLDWAF 113 (142)
T ss_dssp EE-EEEEEEGGGTTSSHHHHHHHHHHHHHH
T ss_pred cc-cccchhHHHHhhhHHHHHHHHHHHHHH
Confidence 44 458999999999999999999999873
No 150
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.01 E-value=1.2 Score=51.61 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGl 295 (1033)
.|.+++..+..++..++....++++|+||.|||++.=.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHH
Confidence 58888888888888877777889999999999986643
No 151
>PRK09183 transposase/IS protein; Provisional
Probab=92.72 E-value=0.47 Score=52.61 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=28.4
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
...++|+|+.|.|||.+.-..+..+...|++-.|++++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 35789999999999997765544556678765677755
No 152
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.72 E-value=0.79 Score=52.18 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPE 316 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~e 316 (1033)
-..++|+|++|.|||+++=. +|.. .|..-.++.+|..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~-ia~~--l~~~~~~~~~~~~~ 88 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANI-IANE--MGVNIRITSGPALE 88 (328)
T ss_pred CCcEEEECCCCccHHHHHHH-HHHH--hCCCeEEEeccccc
Confidence 34789999999999997753 3332 24333345555433
No 153
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.69 E-value=2.1 Score=48.72 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|.+++..+...+..++....++++|++|-|||++.=. +|..+
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~-la~~l 60 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARI-FAKAL 60 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH-HHHHh
Confidence 46777777888887777666789999999999987644 44333
No 154
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.63 E-value=0.7 Score=51.56 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.3
Q ss_pred cEEEEEeCCCCCHHHHHH
Q 001672 277 STVALLAARGRGKSAALG 294 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLG 294 (1033)
..++|+|++|.|||+++=
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999998664
No 155
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.55 E-value=0.79 Score=55.74 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
.|..++.++..++..++....++++|+||.||+++.-+.
T Consensus 20 Gq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 20 GQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred CCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHH
Confidence 488888888888888877778899999999999866543
No 156
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=92.51 E-value=0.083 Score=55.34 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=55.4
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 693 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~ 693 (1033)
.=+-..||+|+|||||+|+++++...+.......
T Consensus 76 ~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~---------------------------------------------- 109 (171)
T COG3153 76 LGLAPLAVDPEYQGQGIGSALVREGLEALRLAGA---------------------------------------------- 109 (171)
T ss_pred EEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCC----------------------------------------------
Confidence 3455789999999999999999987765432211
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcceEEEEccCCc
Q 001672 694 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 748 (1033)
Q Consensus 694 e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~imlk~L~~ 748 (1033)
.. -+-.| =..||.|.||.++-=..-+-..+......|..+|.+
T Consensus 110 ----~~----v~vlG----dp~YY~rfGF~~~~~~~l~~p~~~~~~~fl~~~L~~ 152 (171)
T COG3153 110 ----SA----VVVLG----DPTYYSRFGFEPAAGAKLYAPGPVPDERFLALELGD 152 (171)
T ss_pred ----CE----EEEec----CcccccccCcEEccccccccCCCCCCceEEEEEccC
Confidence 00 11112 236889999999987777777667788899998887
No 157
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.35 E-value=0.99 Score=49.17 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG 299 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ 299 (1033)
|..+.+++..+...+.. ....++|+|+.|.|||+++-..+..
T Consensus 25 ~~~~~~~~~~l~~~~~~--~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQ--REGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CHHHHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 55667766655444422 2447899999999999998765443
No 158
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.31 E-value=0.95 Score=50.84 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCC
Q 001672 277 STVALLAARGRGKSAALGLAIAGAIAAGY 305 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i~~g~ 305 (1033)
..++++|++|.|||++.-..+..+...|+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 37999999999999866443333334454
No 159
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.23 E-value=1.3 Score=52.94 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
+.-|.+|+..++. + +-+++.|+.|.|||.+--+. .+.. + ...+|.+|..+=+...++.+ .++|..
T Consensus 13 r~~Q~~ai~~~l~----g---~dvlv~apTGsGKTl~y~lp--~l~~-~-~~~lVi~P~~~L~~dq~~~l----~~~gi~ 77 (470)
T TIGR00614 13 RPVQLEVINAVLL----G---RDCFVVMPTGGGKSLCYQLP--ALCS-D-GITLVISPLISLMEDQVLQL----KASGIP 77 (470)
T ss_pred CHHHHHHHHHHHc----C---CCEEEEcCCCCcHhHHHHHH--HHHc-C-CcEEEEecHHHHHHHHHHHH----HHcCCc
Confidence 5679998876543 3 25789999999999764332 2332 2 35788999987655443332 233321
Q ss_pred ccccccccccCCC-CCCcceEEEeeeeccceEEEEeCCcccc----------ccCCccEEEEecccCCC
Q 001672 336 EHIDYDIVRSSNP-DLRKPIVRINIYRQHRQTIQYMEPHEHE----------KLAQVELLVIDEAAAIP 393 (1033)
Q Consensus 336 e~~dy~i~~s~~p-~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~----------~l~~adLLvIDEAAAIP 393 (1033)
. ..+.+... +..+.+. .-.......|-|+.|+.+. .....+++|||||=.|.
T Consensus 78 ~----~~l~~~~~~~~~~~i~--~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~ 140 (470)
T TIGR00614 78 A----TFLNSSQSKEQQKNVL--TDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS 140 (470)
T ss_pred E----EEEeCCCCHHHHHHHH--HHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC
Confidence 1 01111100 0000000 0001223356778887542 23468999999999874
No 160
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=92.20 E-value=0.041 Score=64.27 Aligned_cols=115 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhH-HHHHHHHHhhcccccccccccccccccCCCCCCcce
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL-KTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPI 354 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env-~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai 354 (1033)
++-.++.|+||.|||....+.+...+.....+++|+-.....+ .++|+-+...++.+|.... |++..|.
T Consensus 2 ~r~~v~~GGrGS~KS~~~a~~li~~~~~~~~~~l~~R~~~~sl~~Sv~~~l~~~i~~~gl~~~--f~~~~s~-------- 71 (387)
T PF04466_consen 2 KRYIVLKGGRGSGKSSFIAQKLILRAMQYPGRILCVRKVQNSLRDSVYAQLKWAIDRLGLSDY--FKINKSP-------- 71 (387)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEECCCCchHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHHHhcCCCce--EEEcCCC--------
Confidence 3467899999999999988766554433234566655444433 4677778888888887653 4433321
Q ss_pred EEEeeeeccceEEEEeCCcccccc---CCccEEEEecccCCCHHHHHHhhc
Q 001672 355 VRINIYRQHRQTIQYMEPHEHEKL---AQVELLVIDEAAAIPLPVVRSLLG 402 (1033)
Q Consensus 355 ~ri~~~~~h~q~Iqyi~Pd~~~~l---~~adLLvIDEAAAIPlplL~~Ll~ 402 (1033)
+.++...++.|.|.--|+..++ ...+++.|+||.-+.-+-..+|..
T Consensus 72 --~~i~~~~Gs~i~F~Gld~~~kiKS~~~~~~~w~EEa~e~~~~~~~~l~~ 120 (387)
T PF04466_consen 72 --IEIYKPNGSKIIFRGLDDPEKIKSIKGIDIIWVEEAEEFSEEDFDQLIP 120 (387)
T ss_dssp ---------------------------------------------------
T ss_pred --ceEEccCCCEEEEeCCCChhhcCCcccccEEEEechhhccHHHHHHHHH
Confidence 1123344566777666666543 458999999999998877766653
No 161
>PRK13767 ATP-dependent helicase; Provisional
Probab=92.19 E-value=1 Score=58.27 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-------CCeEEEecCChhhHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-G-------YSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g-------~~nI~VTAPs~env~tlFef~ 325 (1033)
.|.-|.+|+..+. ++ .-++|+|+.|.|||.|.-+++...+.. + ...+++.+|..+=+..+++-+
T Consensus 33 ~tpiQ~~Ai~~il----~g---~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L 104 (876)
T PRK13767 33 FTPPQRYAIPLIH----EG---KNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNL 104 (876)
T ss_pred CCHHHHHHHHHHH----cC---CCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHH
Confidence 4788999887542 33 258899999999999887776654431 1 235888899988777666543
No 162
>PHA01807 hypothetical protein
Probab=92.18 E-value=0.25 Score=50.82 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=25.9
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 001672 615 RIVRIATHPSAMRLGYGSTAVELLTRYYEG 644 (1033)
Q Consensus 615 RIVRIAvhPd~q~~GyGsraL~~L~~~~~g 644 (1033)
-|.+|.|+|+|||+|+|++||+.+.++...
T Consensus 83 ~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~ 112 (153)
T PHA01807 83 GVQWQYVLPEYRNAGVAREFLRELIRLAGE 112 (153)
T ss_pred cceeEEECHHHcCCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999887653
No 163
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=92.17 E-value=0.7 Score=53.44 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhc
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
|.+++.++. ++. ...++|+|+.|.|||.+--+++ +.. ..+.++.+|..+-+...++-+..-+
T Consensus 2 Q~~~~~~~~----~~~-~~~~~i~apTGsGKT~~~~~~~---l~~-~~~~~~~~P~~aL~~~~~~~~~~~~ 63 (357)
T TIGR03158 2 QVATFEALQ----SKD-ADIIFNTAPTGAGKTLAWLTPL---LHG-ENDTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred HHHHHHHHH----cCC-CCEEEEECCCCCCHHHHHHHHH---HHc-CCCEEEEeChHHHHHHHHHHHHHHH
Confidence 777665443 332 2368999999999998653322 222 3467888899888776665444333
No 164
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=92.13 E-value=0.77 Score=58.89 Aligned_cols=142 Identities=22% Similarity=0.359 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHH-HHHc-CCCeEEEecCChhhHHHHHHHHHhhc-ccccc
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG-AIAA-GYSNIFVTAPSPENLKTLFEFVCKGF-NAIEY 334 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~-~i~~-g~~nI~VTAPs~env~tlFef~~kgl-~aLgy 334 (1033)
.+.+.+ +++|.+ +.+++|.|..|.|||+-+=..+=. ++.. ++.+|++|-|..-++-.+-|-+.+-. +.+|
T Consensus 176 ~~r~~I---l~~i~~---~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g- 248 (924)
T KOG0920|consen 176 KMRDTI---LDAIEE---NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG- 248 (924)
T ss_pred HHHHHH---HHHHHh---CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC-
Confidence 455544 445544 459999999999999977544433 3333 47899999999999999999886554 2223
Q ss_pred cccccccc-cccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEeccc--CCCH----HHHHHhh--cCC-
Q 001672 335 KEHIDYDI-VRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAA--AIPL----PVVRSLL--GPY- 404 (1033)
Q Consensus 335 ~e~~dy~i-~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAA--AIPl----plL~~Ll--~~y- 404 (1033)
+.+.|.| .++..+. -.+..|.+-+--+++++++.. +...--+||||.= .|+- -+|+.++ .|.
T Consensus 249 -~~VGYqvrl~~~~s~-----~t~L~fcTtGvLLr~L~~~~~--l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 249 -EEVGYQVRLESKRSR-----ETRLLFCTTGVLLRRLQSDPT--LSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred -CeeeEEEeeecccCC-----ceeEEEecHHHHHHHhccCcc--cccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 2233333 1221110 012223333333445555322 3346679999974 3443 3456666 355
Q ss_pred -eEEEEecccC
Q 001672 405 -LVFLSSTVNG 414 (1033)
Q Consensus 405 -~V~lsSTI~G 414 (1033)
.|.||-|++-
T Consensus 321 kvILMSAT~da 331 (924)
T KOG0920|consen 321 KVILMSATLDA 331 (924)
T ss_pred eEEEeeeecch
Confidence 4789999984
No 165
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=92.10 E-value=0.16 Score=43.66 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.5
Q ss_pred EeeCcccccCChHHHHHHHHHHHHhc
Q 001672 619 IATHPSAMRLGYGSTAVELLTRYYEG 644 (1033)
Q Consensus 619 IAvhPd~q~~GyGsraL~~L~~~~~g 644 (1033)
++|+|+|||+|+|+++++.+.++...
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~ 112 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARK 112 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999988877653
No 166
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.09 E-value=1.1 Score=54.27 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|..++.++..++..++....++++|+||.|||++.= ++|.++
T Consensus 17 GQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~Ar-ilAk~L 59 (491)
T PRK14964 17 GQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCAR-IISLCL 59 (491)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHH-HHHHHH
Confidence 3777777777888888777789999999999999543 344443
No 167
>PRK14701 reverse gyrase; Provisional
Probab=92.09 E-value=1.2 Score=60.99 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHh
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK 327 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~k 327 (1033)
.|.-|+.++..++. | +-+++.|+.|.|||+ .|+.++...+..-..++|-+|+.+=+..+.+.+..
T Consensus 80 pt~iQ~~~i~~il~----G---~d~li~APTGsGKTl-~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 80 FWSIQKTWAKRILR----G---KSFSIVAPTGMGKST-FGAFIALFLALKGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred CCHHHHHHHHHHHc----C---CCEEEEEcCCCCHHH-HHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH
Confidence 58889998876543 2 357899999999999 56555554433224799999999988777766654
No 168
>PRK06893 DNA replication initiation factor; Validated
Probab=92.06 E-value=1.6 Score=47.32 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEec
Q 001672 278 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 312 (1033)
Q Consensus 278 ~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTA 312 (1033)
.+.|.|+.|.|||.++-..+..+...|..-+|+++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 47999999999999987766667777776678886
No 169
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=91.99 E-value=0.21 Score=55.42 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=48.1
Q ss_pred CCCeEEEEEeeecCCCCHHH--HHHHHhcCC----CCCC--CchhHHHHhhhcCCCCCCCcceEEEEEeeCcccccCChH
Q 001672 560 LPDILCVIQVCLEGQISRRS--VLKSFSEGH----QPSG--DQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYG 631 (1033)
Q Consensus 560 lp~il~viqva~EG~is~~~--i~~~l~~G~----Rp~G--dLIP~~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyG 631 (1033)
+|.+..-.++..+|.-..+. +.-..+.|+ .-.| ++|. .++.-.. .-.++||.-..|||+|||+||+
T Consensus 146 i~~~~~~~~l~~~g~~~~~~~~~~~~~a~g~~~~~f~~~d~~iVa--~A~t~a~----~~~~~~I~gV~T~peyR~kGyA 219 (268)
T COG3393 146 IPEVGLRATLDDFGRADSRKEAVAVLNALGRSRTYFLEGDGKIVA--KAETAAE----NPAYAQINGVYTHPEYRGKGYA 219 (268)
T ss_pred chheeeeeeecccccCcchHHHHHHHHHhhceeEEEEccCCcEEE--eeecccc----CCcceEEEEEEcCHHHccccHH
Confidence 46667777777788765553 222223333 2333 4544 2222111 2256899999999999999999
Q ss_pred HHHHHHHHH
Q 001672 632 STAVELLTR 640 (1033)
Q Consensus 632 sraL~~L~~ 640 (1033)
++++..|..
T Consensus 220 t~lva~L~~ 228 (268)
T COG3393 220 TALVATLAA 228 (268)
T ss_pred HHHHHHHHH
Confidence 999998764
No 170
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.85 E-value=1.3 Score=55.50 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGl 295 (1033)
.|..++..+..++..++....++++|+||.|||++.=+
T Consensus 20 GQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 20 GQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHH
Confidence 48888888888888887777899999999999986543
No 171
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.81 E-value=0.91 Score=54.76 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI 297 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlai 297 (1033)
.|..++.++..++..++....++++|+||.|||++.=+.+
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4888888888888877666678999999999999765443
No 172
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=91.80 E-value=0.89 Score=47.70 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=67.2
Q ss_pred CCCCCCcceEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCC
Q 001672 606 AVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNL 685 (1033)
Q Consensus 606 ~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~ 685 (1033)
..++.+.+.-...|=+||+.||+|+|+++|+.|+++.+....
T Consensus 74 r~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~-------------------------------------- 115 (169)
T COG1247 74 RERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGV-------------------------------------- 115 (169)
T ss_pred cCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCe--------------------------------------
Confidence 456778889999999999999999999999999987653321
Q ss_pred CcccccccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCc--ceEEEEccCCc
Q 001672 686 PPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE--HTCMVLKPLHS 748 (1033)
Q Consensus 686 p~ll~~l~e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGE--hS~imlk~L~~ 748 (1033)
-..++.=|.-+..=++|-++.||.-+-.-...++.-|- ..|+|=+.|+.
T Consensus 116 --------------~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 116 --------------RELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred --------------EEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeeeehhhcc
Confidence 01334444445567889999999999988888777773 34555555543
No 173
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.72 E-value=1.6 Score=53.98 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
-|..++.++...+..++....++++|+||.||+++.=+ +|..+
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~-lAk~l 59 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARI-LARSL 59 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH-HHHHh
Confidence 48888888888888877777789999999999986543 34333
No 174
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.72 E-value=1.9 Score=53.82 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
.|.+++..+.+++..++....++++|.||.||+++.-+.
T Consensus 20 GQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriL 58 (700)
T PRK12323 20 GQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRIL 58 (700)
T ss_pred CcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHH
Confidence 488888888888888888888999999999999876543
No 175
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=91.69 E-value=0.49 Score=37.80 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=39.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 905 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl 905 (1033)
.|++.+..++....+++.++.+||+++|++...+...++++.+++
T Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~ia~~~~~s~~~i~~~~~~~~~~l 54 (55)
T cd06171 10 KLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKL 54 (55)
T ss_pred hCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 478888999999999999999999999999999988888776553
No 176
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.66 E-value=1.5 Score=49.25 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 300 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~ 300 (1033)
|..++..+...+..+.. ..++++|++|.|||+++-..+..+
T Consensus 20 ~~~~~~~L~~~~~~~~~-~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 20 QDEVVERLSRAVDSPNL-PHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred CHHHHHHHHHHHhCCCC-ceEEEECCCCCCHHHHHHHHHHHh
Confidence 44555555555544432 368999999999999876544443
No 177
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.59 E-value=0.89 Score=54.28 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=30.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 314 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs 314 (1033)
.+.++++|..|.|||++++-.++.+...|+.=.+|++..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 457899999999999999877777767787545666654
No 178
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.37 E-value=1.8 Score=53.19 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG 299 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ 299 (1033)
-|.+++..+..++..++....++++|++|.|||++.=+.+..
T Consensus 20 Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 488888888888877766667899999999999976554433
No 179
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.31 E-value=0.64 Score=51.45 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~ 325 (1033)
-..|.++|.+=++++..|.....+.|+|+||.|||+++=-.+......|..=|-|+.-....+..+++.+
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l 101 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLL 101 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHH
Confidence 3568888877777777777666889999999999999876666666667655677666666666666554
No 180
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.27 E-value=0.93 Score=54.23 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 314 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs 314 (1033)
..++.|+|+.|.|||.++-..+..+...|..=++|++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 358999999999999988754444555676667888653
No 181
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.24 E-value=2.5 Score=54.32 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
|.+++..+...+..++....+++.|.+|.||+++.=+.
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~l 57 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARIL 57 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHH
Confidence 66667777777777777778899999999999866443
No 182
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=91.16 E-value=0.27 Score=59.82 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.3
Q ss_pred eCcccccCChHHHHHHHHHHHH
Q 001672 621 THPSAMRLGYGSTAVELLTRYY 642 (1033)
Q Consensus 621 vhPd~q~~GyGsraL~~L~~~~ 642 (1033)
++|+||++|||+++|+.++++.
T Consensus 465 ~~~~~rg~GiG~~Ll~~ae~~A 486 (522)
T TIGR01211 465 GDDEWQHRGYGRRLLEEAERIA 486 (522)
T ss_pred CChhHhCcCHHHHHHHHHHHHH
Confidence 5699999999999999887754
No 183
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.15 E-value=1.2 Score=53.24 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCCeEEEecCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAPS 314 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~---g~~nI~VTAPs 314 (1033)
..+++|+|+.|.|||.++- |++..+.. |+.=++||++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~-Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLK-AAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred cCceEEECCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEHHH
Confidence 4589999999999999984 55554432 45446777753
No 184
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.09 E-value=0.76 Score=59.20 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA 303 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~ 303 (1033)
.|.+-+..+++.+..++ +.-++|+|+.|.|||++. -++|..+..
T Consensus 182 gr~~ei~~~i~iL~r~~-~~n~lL~G~pGvGKT~l~-~~la~~i~~ 225 (857)
T PRK10865 182 GRDEEIRRTIQVLQRRT-KNNPVLIGEPGVGKTAIV-EGLAQRIIN 225 (857)
T ss_pred CCHHHHHHHHHHHhcCC-cCceEEECCCCCCHHHHH-HHHHHHhhc
Confidence 35556888887766554 446779999999999987 345554433
No 185
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.00 E-value=1 Score=53.09 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHhcccCCcEEEEEeCCCCCHHHHHHH
Q 001672 266 FLDAILDKTLRSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 266 ~~~~i~ek~~r~~vvLTA~RGRGKSAaLGl 295 (1033)
+...+..+. ...++|+|++|.|||++.-.
T Consensus 27 L~~~i~~~~-~~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 27 LRRMIEAGR-LSSMILWGPPGTGKTTLARI 55 (413)
T ss_pred HHHHHHcCC-CceEEEECCCCCCHHHHHHH
Confidence 444444443 34789999999999986643
No 186
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.89 E-value=1.7 Score=54.36 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALG 294 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLG 294 (1033)
.|.+++..+..++..++....++++|+||.|||++.=
T Consensus 19 GQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAr 55 (702)
T PRK14960 19 GQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIAR 55 (702)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 4888888888888888777789999999999998653
No 187
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.68 E-value=1 Score=52.79 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCCeE-EEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIA-AGYSNI-FVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~-~g~~nI-~VTAPs~ 315 (1033)
...++|.|+.|-|||+++...++.++. +|+.+| +||+-+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 468999999999999999887777654 476565 6665443
No 188
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.67 E-value=2.5 Score=51.42 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI 297 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlai 297 (1033)
.|..++.++..++..++....+++||+||.|||++.=+.+
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 5888888887778777666789999999999999765443
No 189
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.61 E-value=1.8 Score=48.21 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG 304 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g 304 (1033)
|..++..+...+..++. ..++|+|++|.|||+++-..+..+...+
T Consensus 22 ~~~~~~~l~~~i~~~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 22 QEEIVERLKSYVKEKNM-PHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred cHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 55566666665655433 3589999999999998876555544333
No 190
>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Probab=90.56 E-value=0.62 Score=47.80 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=49.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSE 915 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~~~ 915 (1033)
.|++.+..++....+|+.+.++||+++|++.+.+...+.++.++|-.++......
T Consensus 100 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~~~~ 154 (170)
T TIGR02959 100 ELPDEYREAIRLTELEGLSQQEIAEKLGLSLSGAKSRVQRGRKKLKELLETCCHF 154 (170)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 5889999999999999999999999999999999999999999999988765433
No 191
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.31 E-value=2.1 Score=58.28 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=81.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCC--CCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcc
Q 001672 253 KCSTLDQGKAVITFLDAILDKTLRSTVALLAARG--RGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFN 330 (1033)
Q Consensus 253 ~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RG--RGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~ 330 (1033)
...+.+|..|+..++ .. +..+++.+.-| .|||+.|.-.+..+-..|| .|.+-||+-..+++|-+= .||+
T Consensus 280 ~~~~~~q~~Av~~il-----~d-r~~v~iv~~~GgAtGKtt~l~~l~~~a~~~G~-~V~~lApt~~a~~~L~e~--~gi~ 350 (1623)
T PRK14712 280 VPRTAGYSDAVSVLA-----QD-RPSLAIVSGQGGAAGQRERVAELVMMAREQGR-EVQIIAADRRSQMNLKQD--ERLS 350 (1623)
T ss_pred cccchhHHHHHHHHh-----cC-CCceEEEEecccccccHHHHHHHHHHHHhCCc-EEEEEeCCHHHHHHHHhc--cCCC
Confidence 335678999887654 12 33455555555 8999999955555556786 799999999999888532 1222
Q ss_pred cccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc-----CCe
Q 001672 331 AIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----PYL 405 (1033)
Q Consensus 331 aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~-----~y~ 405 (1033)
+ +.+. +.. .|..... ...-++||||||-.++..-+..|+. .-.
T Consensus 351 a---------~Tva-----------~~~---------~~l~~~~---~~~~~ilIVDEA~~Ls~rdm~~Ll~~A~~~gar 398 (1623)
T PRK14712 351 G---------ELIT-----------GRR---------QLLEGMA---FTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQ 398 (1623)
T ss_pred c---------hhhh-----------hhh---------hhhcccC---CCCCcEEEEECCCcCCHHHHHHHHHHHHhcCCE
Confidence 1 1111 000 0122111 1234899999999999998888883 225
Q ss_pred EEEEecccCCCCCCcchh
Q 001672 406 VFLSSTVNGYEGTGRSLS 423 (1033)
Q Consensus 406 V~lsSTI~GYEGTGRgfs 423 (1033)
|||.=|-.+-+ +|+.|+
T Consensus 399 VllgD~~Q~~a-AG~af~ 415 (1623)
T PRK14712 399 VLITDSGQRTG-TGSALM 415 (1623)
T ss_pred EEEEechhhhh-cccHHH
Confidence 77776555533 888774
No 192
>PRK13766 Hef nuclease; Provisional
Probab=90.29 E-value=1.8 Score=55.02 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=39.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhc
Q 001672 278 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 278 ~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
-++|.++.|-|||.+-.+.++..+......++|.+|+.+-+....+++.+-+
T Consensus 31 n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 31 NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 4688999999999877766666654334689999999888877777766544
No 193
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.26 E-value=0.33 Score=60.10 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
.|..++..+..++..++....++++|.||.|||++.=+.
T Consensus 20 GQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 20 GQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 377888888888888877778899999999999976553
No 194
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.07 E-value=3.9 Score=51.04 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
-|..++..+..++..++....++++|++|-||++ +..++|..+
T Consensus 21 Gq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt-~A~~lAk~l 63 (614)
T PRK14971 21 GQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTT-CARIFAKTI 63 (614)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHH-HHHHHHHHh
Confidence 3778788888888888878889999999999999 666666665
No 195
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.98 E-value=1.9 Score=55.40 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
.|.+++..|..++..++....++++|+||.|||++.=+.
T Consensus 20 GQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiL 58 (944)
T PRK14949 20 GQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLF 58 (944)
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHH
Confidence 488888888888888877778899999999999976443
No 196
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.97 E-value=2.6 Score=48.66 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
.|..++..+...+..++....+++.|++|.|||++.=..
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 466777778888877777778999999999999877654
No 197
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.92 E-value=2.8 Score=50.98 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|.+++..+...+..++....++++|++|.|||++.=+ +|..+
T Consensus 18 Gq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 18 GQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH-HHHHH
Confidence 47788888888787776666779999999999998754 44444
No 198
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=89.84 E-value=0.88 Score=46.12 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=48.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..|++.+..++....+++.|+.+||+.||++.+.|...+.++.++|-+.+...
T Consensus 127 ~~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 179 (182)
T PRK09652 127 ESLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSRIFRAREALRAKLQPL 179 (182)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999888754
No 199
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.84 E-value=0.43 Score=57.91 Aligned_cols=69 Identities=26% Similarity=0.115 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--C-CCe-EEEecCChhhHHHHHHHHHhhcc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--G-YSN-IFVTAPSPENLKTLFEFVCKGFN 330 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~--g-~~n-I~VTAPs~env~tlFef~~kgl~ 330 (1033)
.|.=|++++-.++. + +-++..|..|.|||+|-+|-+-..+.. . ... .+|-+|+.|=+..+++-+.+--.
T Consensus 52 pt~IQ~~~IP~~l~----g---~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~ 124 (513)
T COG0513 52 PTPIQLAAIPLILA----G---RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGK 124 (513)
T ss_pred CCHHHHHHHHHHhC----C---CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHh
Confidence 37889998875543 2 578999999999999999998887762 2 112 89999999999998887655443
No 200
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.78 E-value=2.3 Score=43.53 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=27.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEec-CChhhH
Q 001672 279 VALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA-PSPENL 318 (1033)
Q Consensus 279 vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTA-Ps~env 318 (1033)
++|+|+.|.|||+..--.+..++..|..-++||. .+++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 5899999999999655444545566766667765 344444
No 201
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=89.73 E-value=0.73 Score=47.65 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=46.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
-.|++.|..+++..-+++.|.+|||++||++.+-+...+.++++++.+++
T Consensus 126 ~~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~rAl~~~~~~~ 175 (178)
T PRK12529 126 DTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQAYVTCLSLM 175 (178)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhC
Confidence 35899999999999999999999999999999999999999999998774
No 202
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.64 E-value=3.7 Score=45.50 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
|.-..+.+..+...+.. ..++.|+|+.|.|||++.- ++|. ..|..=+.|+.-
T Consensus 4 t~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~-~la~--~lg~~~~~i~~~ 55 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAM-HVAR--KRDRPVMLINGD 55 (262)
T ss_pred CHHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHH-HHHH--HhCCCEEEEeCC
Confidence 44455555555555543 4589999999999998653 3443 236554555443
No 203
>PRK04195 replication factor C large subunit; Provisional
Probab=89.62 E-value=4.2 Score=49.07 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKT 320 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~t 320 (1033)
++.+.+..+++....+...+.++|+|++|.|||++.=. + +-..|+.-|.+++....+...
T Consensus 21 ~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~a-l--a~el~~~~ielnasd~r~~~~ 80 (482)
T PRK04195 21 KAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHA-L--ANDYGWEVIELNASDQRTADV 80 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHH-H--HHHcCCCEEEEcccccccHHH
Confidence 44444555555544555467899999999999986532 2 223476667777655444433
No 204
>PRK00118 putative DNA-binding protein; Validated
Probab=89.62 E-value=1.2 Score=43.15 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=48.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..|++.|..++.....++.|+.+||+.+|++.+-+...+.++.+++-+++..+
T Consensus 16 ~~L~ekqRevl~L~y~eg~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~~~~~ 68 (104)
T PRK00118 16 SLLTEKQRNYMELYYLDDYSLGEIAEEFNVSRQAVYDNIKRTEKLLEDYEEKL 68 (104)
T ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998888754
No 205
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.61 E-value=2.4 Score=52.72 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 298 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA 298 (1033)
.|..++.++..++..++....++++|.||.||+++.-+.+.
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 47888888888888887777899999999999997655433
No 206
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=89.53 E-value=1.1 Score=45.04 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=47.9
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
..|++.|..+++..-+|+.|..+||+.||++.+.+...+.++.++|-+++..
T Consensus 105 ~~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 156 (161)
T PRK09047 105 QKLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALAKALEA 156 (161)
T ss_pred HhCCHHHHHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999999888753
No 207
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.52 E-value=3.3 Score=50.69 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
.|.+++..+..++..++....++++|++|.|||++.-+.
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHH
Confidence 478888888888888777778899999999999866543
No 208
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.50 E-value=2.2 Score=52.95 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHHhcccC-CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccc
Q 001672 254 CSTLDQGKAVITFLDAILDKTL-RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~-r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aL 332 (1033)
..|.+|.+++..+..-++.... .| +|-||=|.||+.+..+|+..++..|| ...+-||+-==+..-|+.+.+-|+.+
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~R--LlQGDVGSGKTvVA~laml~ai~~G~-Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNR--LLQGDVGSGKTVVALLAMLAAIEAGY-QAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHH--HhccCcCCCHHHHHHHHHHHHHHcCC-eeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 4699999999998776665332 33 79999999999999999999999998 68889999888888888888888876
Q ss_pred cccccccccccccCCCCCCcce-EE-----Eee-eeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhh--cC
Q 001672 333 EYKEHIDYDIVRSSNPDLRKPI-VR-----INI-YRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL--GP 403 (1033)
Q Consensus 333 gy~e~~dy~i~~s~~p~~~~ai-~r-----i~~-~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll--~~ 403 (1033)
|..-.. +.-|..+.-++.+ .+ +++ .-+|- -+ +|-......-|+||||===..+..=.+|. |.
T Consensus 339 ~i~V~l---LtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----Li--Qd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~ 409 (677)
T COG1200 339 GIRVAL---LTGSLKGKARKEILEQLASGEIDIVVGTHA----LI--QDKVEFHNLGLVIIDEQHRFGVHQRLALREKGE 409 (677)
T ss_pred CCeEEE---eecccchhHHHHHHHHHhCCCCCEEEEcch----hh--hcceeecceeEEEEeccccccHHHHHHHHHhCC
Confidence 643211 1111111000000 00 011 11221 00 01111234579999999999998888787 44
Q ss_pred ---CeEEEEecccCCCCCCcchhHHHHHHhh
Q 001672 404 ---YLVFLSSTVNGYEGTGRSLSLKLLHQLE 431 (1033)
Q Consensus 404 ---y~V~lsSTI~GYEGTGRgfsLKf~~~L~ 431 (1033)
+..+||-| -.=|.++|-..-.|.
T Consensus 410 ~~Ph~LvMTAT-----PIPRTLAlt~fgDld 435 (677)
T COG1200 410 QNPHVLVMTAT-----PIPRTLALTAFGDLD 435 (677)
T ss_pred CCCcEEEEeCC-----CchHHHHHHHhcccc
Confidence 45677776 356888877766663
No 209
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.45 E-value=2.7 Score=52.60 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI 297 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlai 297 (1033)
-|.+++..+..++..++....++++|.||.|||++.=+.+
T Consensus 20 GQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 20 GQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4888888888888888777778999999999999765443
No 210
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=89.30 E-value=2.9 Score=49.95 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
-.-|.+|+.++...... .+..+|.++-|.|||-. |+.++. .-..+++|-+|+.+-+..-.+...+.+..-.
T Consensus 38 r~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~v-a~~~~~---~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~-- 108 (442)
T COG1061 38 RPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVV-AAEAIA---ELKRSTLVLVPTKELLDQWAEALKKFLLLND-- 108 (442)
T ss_pred cHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHH-HHHHHH---HhcCCEEEEECcHHHHHHHHHHHHHhcCCcc--
Confidence 45799999988765443 34568899999999863 333333 2235699999999998887766555544210
Q ss_pred ccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc-c-CCccEEEEecccCCCHHHHHHhh----cCC-eEEE
Q 001672 336 EHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-L-AQVELLVIDEAAAIPLPVVRSLL----GPY-LVFL 408 (1033)
Q Consensus 336 e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~-l-~~adLLvIDEAAAIPlplL~~Ll----~~y-~V~l 408 (1033)
+- -+......++..+.+.|..+...... . .+.. . ...+||||||+==+|-|.-+.++ .++ +.=|
T Consensus 109 ~~---g~~~~~~~~~~~~~i~vat~qtl~~~----~--~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGL 179 (442)
T COG1061 109 EI---GIYGGGEKELEPAKVTVATVQTLARR----Q--LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGL 179 (442)
T ss_pred cc---ceecCceeccCCCcEEEEEhHHHhhh----h--hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccceeee
Confidence 00 00001111111111222211111000 0 1111 2 25899999999999987766655 355 5557
Q ss_pred EecccCCCCCC
Q 001672 409 SSTVNGYEGTG 419 (1033)
Q Consensus 409 sSTI~GYEGTG 419 (1033)
+.|-. ++.-|
T Consensus 180 TATp~-R~D~~ 189 (442)
T COG1061 180 TATPE-REDGG 189 (442)
T ss_pred ccCce-eecCC
Confidence 88844 65533
No 211
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=89.18 E-value=1.4 Score=57.81 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHH-HHHHHHHhhccccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLK-TLFEFVCKGFNAIE 333 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~-tlFef~~kgl~aLg 333 (1033)
-+.-|.+||..++ .| +-+++.++.|-|||.+-=| .+++.-| -.+|-+|..+=++ .+......|+.+.-
T Consensus 461 FRp~Q~eaI~aiL----~G---rDVLVimPTGSGKSLcYQL--PAL~~~G--iTLVISPLiSLmqDQV~~L~~~GI~Aa~ 529 (1195)
T PLN03137 461 FRPNQREIINATM----SG---YDVFVLMPTGGGKSLTYQL--PALICPG--ITLVISPLVSLIQDQIMNLLQANIPAAS 529 (1195)
T ss_pred CCHHHHHHHHHHH----cC---CCEEEEcCCCccHHHHHHH--HHHHcCC--cEEEEeCHHHHHHHHHHHHHhCCCeEEE
Confidence 4667999886553 22 3589999999999987543 2333333 5799999888765 44444444444321
Q ss_pred ccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc-------------cCCccEEEEecccCCC
Q 001672 334 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-------------LAQVELLVIDEAAAIP 393 (1033)
Q Consensus 334 y~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~-------------l~~adLLvIDEAAAIP 393 (1033)
.....++.-. ..+.+-.......-.|-|+.|+-+.. .....++|||||=.|.
T Consensus 530 L~s~~s~~eq--------~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 530 LSAGMEWAEQ--------LEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred EECCCCHHHH--------HHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 1111110000 00000000001234688999976421 1236789999997764
No 212
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.14 E-value=0.76 Score=46.62 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG 304 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g 304 (1033)
+|-+.+.++++ .......+.++|+|.+|.|||+.|--.+..+...+
T Consensus 7 ~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 7 EEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp HHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45555555554 23333356899999999999999987666665553
No 213
>PRK07037 extracytoplasmic-function sigma-70 factor; Validated
Probab=89.08 E-value=1.1 Score=45.07 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+++...+++.|.+|||+++|++.+-|...+.++++++-+++.+
T Consensus 109 ~L~~~~r~v~~l~~~~~~s~~EIA~~lgis~~tV~~~l~ra~~~lr~~l~~ 159 (163)
T PRK07037 109 ELPARTRYAFEMYRLHGETQKDIARELGVSPTLVNFMIRDALVHCRKCLDA 159 (163)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999888754
No 214
>PRK12536 RNA polymerase sigma factor; Provisional
Probab=88.97 E-value=1 Score=46.62 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=47.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
..|++.|..+++..-+++.|.++||++||++.+.+...+..+.++|-+++.+
T Consensus 128 ~~L~~~~r~v~~l~~~~g~s~~EIA~~l~is~~tV~~~l~rar~~Lr~~l~~ 179 (181)
T PRK12536 128 EQLPDRQRLPIVHVKLEGLSVAETAQLTGLSESAVKVGIHRGLKALAAKIRG 179 (181)
T ss_pred HHCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3578899999999999999999999999999999999999999999887753
No 215
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=88.93 E-value=1.2 Score=56.47 Aligned_cols=104 Identities=19% Similarity=0.308 Sum_probs=59.4
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCC---CCCC
Q 001672 275 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSN---PDLR 351 (1033)
Q Consensus 275 ~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~---p~~~ 351 (1033)
.+.+.+|-|+=|.|||++|.-.+...+...-.+|+|.|=. ++|-+-+...|+.-||.....|.-..... -.++
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShR----rSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHR----RSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhH----HHHHHHHHHHHhhcCCCcceeeeccccccccccccC
Confidence 3668899999999999999888877764323467666544 44444444555544544333333222110 0123
Q ss_pred cceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCC
Q 001672 352 KPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAI 392 (1033)
Q Consensus 352 ~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAI 392 (1033)
+-++-|+.+ || +.++ .+.++|+|||||+-.+
T Consensus 124 rLivqIdSL--~R-----~~~~---~l~~yDvVIIDEv~sv 154 (824)
T PF02399_consen 124 RLIVQIDSL--HR-----LDGS---LLDRYDVVIIDEVMSV 154 (824)
T ss_pred eEEEEehhh--hh-----cccc---cccccCEEEEehHHHH
Confidence 444444433 11 1222 1335899999998654
No 216
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=88.87 E-value=1.1 Score=45.32 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.+..+++..-+++.++++||+++|++.+.|...+.++.+++-+++..-
T Consensus 125 ~L~~~~r~i~~l~~~~~~~~~eIA~~lgis~~tv~~~~~ra~~~lr~~l~~~ 176 (179)
T PRK11924 125 ALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSRLRRARQLLRECLEAQ 176 (179)
T ss_pred hCCHHHHHHhhHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999998887643
No 217
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=88.76 E-value=1.1 Score=46.23 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..++....+++.|.++||++||++.+.|...+.++.++|-+.+.+
T Consensus 131 ~L~~~~r~v~~l~~~~g~s~~eIA~~l~is~~tV~~~l~ra~~~Lr~~l~~ 181 (184)
T PRK12512 131 TLPPRQRDVVQSISVEGASIKETAAKLSMSEGAVRVALHRGLAALAAKFRS 181 (184)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 588999999999999999999999999999999999999999999887753
No 218
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.69 E-value=3.6 Score=48.59 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhccc---------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKT---------LRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~---------~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|.+++..+..++..++ ....++++|+.|.||+++.= ++|..+
T Consensus 9 Gq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~-~lA~~l 60 (394)
T PRK07940 9 GQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAAR-AFAAAL 60 (394)
T ss_pred ChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHH-HHHHHh
Confidence 47777777777776654 45678999999999998553 344433
No 219
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.63 E-value=2.5 Score=50.28 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=60.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEecCChh--hHHHHHHHHHhhcccccccccccccccccCCCCCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAI-AA-GYSNIFVTAPSPE--NLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLR 351 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i-~~-g~~nI~VTAPs~e--nv~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~ 351 (1033)
.+.+++.|+.|-|||+++.-.++.+. .. |+.=.+||+-+.. ++..+..++. .+|. .+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~----~~~v----p~~~~-------- 284 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAK----IMGI----PVEVV-------- 284 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHH----HhCC----ceEcc--------
Confidence 35789999999999988876555554 33 5544577775543 3334444432 1221 11111
Q ss_pred cceEEEeeeeccceEEEEeCCccc----cccCCccEEEEecccCCCHH-----HHHHhhc-CC-----eEEEEecc
Q 001672 352 KPIVRINIYRQHRQTIQYMEPHEH----EKLAQVELLVIDEAAAIPLP-----VVRSLLG-PY-----LVFLSSTV 412 (1033)
Q Consensus 352 ~ai~ri~~~~~h~q~Iqyi~Pd~~----~~l~~adLLvIDEAAAIPlp-----lL~~Ll~-~y-----~V~lsSTI 412 (1033)
..|+++ ..+..+|+||||.|.-.|.. .++.++. .. .+++++|.
T Consensus 285 ------------------~~~~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~ 342 (424)
T PRK05703 285 ------------------YDPKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT 342 (424)
T ss_pred ------------------CCHHhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC
Confidence 122222 23446899999999887764 5667765 21 45567764
No 220
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=88.59 E-value=1.3 Score=44.62 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+++..-+++.|..+||+.+|++.+.|...+.++.++|-+.+.+
T Consensus 106 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~ 156 (160)
T PRK09642 106 ELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKE 156 (160)
T ss_pred hCCHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 588999999999999999999999999999999999999999999887753
No 221
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=88.53 E-value=3 Score=52.87 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|.+++..+...+..++....++++|.||.|||++.=+ +|..+
T Consensus 20 GQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAri-LAKaL 62 (830)
T PRK07003 20 GQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRI-FAKAL 62 (830)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHH-HHHHh
Confidence 48888888888888777777889999999999986543 34433
No 222
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=88.47 E-value=1.6 Score=54.51 Aligned_cols=74 Identities=18% Similarity=0.083 Sum_probs=54.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccc
Q 001672 252 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1033)
Q Consensus 252 ~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~a 331 (1033)
.+-.|.-|..++..+. +| + +.-+..|-|||.+..|++......| ..+.|.+|+.+=++..++.+.+-++.
T Consensus 101 g~~p~~VQ~~~~~~ll----~G--~---Iae~~TGeGKTla~~lp~~~~al~G-~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 101 GQRHFDVQLMGGLALL----SG--R---LAEMQTGEGKTLTATLPAGTAALAG-LPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred CCCCChHHHHHHHHHh----CC--C---eeeeeCCCCcHHHHHHHHHHHhhcC-CeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 3445666777766443 33 2 7889999999999999888776667 47999999998888777777665555
Q ss_pred cccc
Q 001672 332 IEYK 335 (1033)
Q Consensus 332 Lgy~ 335 (1033)
+|.+
T Consensus 171 lGls 174 (656)
T PRK12898 171 LGLT 174 (656)
T ss_pred cCCE
Confidence 5543
No 223
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.41 E-value=4.7 Score=49.76 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 298 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA 298 (1033)
-|..++.++..++..++....++++|+||.||+++.=+.+.
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 20 GQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 47777888888888877777889999999999998766543
No 224
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.35 E-value=5.4 Score=48.43 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|..++.++..++..++....++++|+||.|||+ +-.++|..+
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTt-lAr~lAk~L 62 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTT-IARILAKVL 62 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHH-HHHHHHHHh
Confidence 5888888888888887777778899999999955 444455544
No 225
>PRK09639 RNA polymerase sigma factor SigX; Provisional
Probab=88.17 E-value=1.4 Score=44.55 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=47.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhch
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISS 914 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~~ 914 (1033)
.|++.|+.+++... |+.+..+||+.+|++.+.+-..+.++.++|-+++....+
T Consensus 112 ~L~~~~r~il~l~~-~g~s~~eIA~~lgis~~tV~~~i~ra~~~Lr~~l~~~~~ 164 (166)
T PRK09639 112 KMTERDRTVLLLRF-SGYSYKEIAEALGIKESSVGTTLARAKKKFRKIYEQMEE 164 (166)
T ss_pred cCCHHHHHHHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57888999999999 999999999999999999999999999999988875543
No 226
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.12 E-value=3.9 Score=49.44 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 298 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA 298 (1033)
.|.+++..+...+..++....++++|++|.|||++.=+.+.
T Consensus 18 Gq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 18 GQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36666767777777777666789999999999997654433
No 227
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=88.12 E-value=1.3 Score=46.36 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=48.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.|+.+++..-+++.|+++||+.||++.+-|...+.++.++|-.++.++
T Consensus 136 ~L~~~~r~i~~L~~~~g~s~~eIA~~lgis~~tV~~~l~Ra~~~Lr~~l~~~ 187 (196)
T PRK12524 136 ALPERQRQAVVLRHIEGLSNPEIAEVMEIGVEAVESLTARGKRALAALLAGQ 187 (196)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999999999999999999988764
No 228
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=88.08 E-value=1.3 Score=45.50 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=46.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.|..+++..-+++.|..|||+.+|++.+-|...+.++..+|-+++
T Consensus 134 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l 182 (183)
T TIGR02999 134 QVDPRQAEVVELRFFAGLTVEEIAELLGVSVRTVERDWRFARAWLADEL 182 (183)
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999988765
No 229
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.96 E-value=2.1 Score=49.53 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CCeEEEecCChhhHHHHHHHHHhhc
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g--~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
+|.+.+..++.....+.....++|+|+||.|||+++=-.+..+-..+ ..-|+|.++...+...++..+...+
T Consensus 37 ~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 110 (394)
T PRK00411 37 EQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL 110 (394)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence 45555666664443333345689999999999999877666555443 5568888887777666666555544
No 230
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=87.95 E-value=1.3 Score=46.34 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=48.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 913 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~ 913 (1033)
.|++.+..+|+...++++|+++||+++|++.+.+...+..+.++|-+++..+.
T Consensus 134 ~Lp~~~r~i~~l~~~~g~s~~EIA~~lg~s~~tV~~rl~rar~~Lr~~l~~~~ 186 (192)
T PRK09643 134 RLPVEQRAALVAVDMQGYSVADAARMLGVAEGTVKSRCARGRARLAELLGYLR 186 (192)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999988888887553
No 231
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=87.90 E-value=0.45 Score=42.99 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.3
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHH
Q 001672 615 RIVRIATHPSAMRLGYGSTAVELLTRYY 642 (1033)
Q Consensus 615 RIVRIAvhPd~q~~GyGsraL~~L~~~~ 642 (1033)
=|-||=|||.+||+|++++||+.+...|
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 4889999999999999999999987654
No 232
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=87.82 E-value=1.3 Score=45.75 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=48.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..|++.+..+++...+.+.+.++||+.+|++.+.|-..+.++.++|-+++...
T Consensus 127 ~~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 179 (186)
T PRK05602 127 AALPERQREAIVLQYYQGLSNIEAAAVMDISVDALESLLARGRRALRAQLADL 179 (186)
T ss_pred HhCCHHHHHHhhHHHhcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999999988753
No 233
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=87.75 E-value=9.1 Score=38.61 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHHhcccCCChhHHHHhhcCCCCeEEEEecCCcccCCCCCCeEEEEEeeecCCCCHHHHHHHHhcCCCC
Q 001672 511 ESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQP 590 (1033)
Q Consensus 511 ~sE~fLqq~~~LlV~AHYknsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp 590 (1033)
.|+.-+..+-=|| -| -+|..|+..+ +..|.||+..- | ..+||++.|..+|
T Consensus 10 ls~Qd~iDL~KIw--p~--~~~~~l~~~l-~~~~~l~aArF----N----dRlLgAv~v~~~~----------------- 59 (128)
T PF12568_consen 10 LSEQDRIDLAKIW--PQ--QDPEQLEQWL-DEGHRLFAARF----N----DRLLGAVKVTISG----------------- 59 (128)
T ss_dssp --HHHHHHHHHH---TT--S-----------SSEEEEEEEE----T----TEEEEEEEEEEET-----------------
T ss_pred CCHHHHHHHHHhC--CC--CCHHHHHHHh-ccCCeEEEEEe----c----hheeeeEEEEEcC-----------------
Confidence 3555555555566 33 3455676666 56889999874 2 3699999999887
Q ss_pred CCCchhHHHHhhhcCCCCCCCcceEEEEEeeCcccccCChHHHHHHHHHHH
Q 001672 591 SGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRY 641 (1033)
Q Consensus 591 ~GdLIP~~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~ 641 (1033)
..+.+..+.|+|-=||+|.|.++|+.+.+-
T Consensus 60 ---------------------~~~~L~~l~VRevTRrRGVG~yLlee~~rq 89 (128)
T PF12568_consen 60 ---------------------QQAELSDLCVREVTRRRGVGLYLLEEVLRQ 89 (128)
T ss_dssp ---------------------TEEEEEEEEE-TT-SSSSHHHHHHHHHHHH
T ss_pred ---------------------cceEEeeEEEeeccccccHHHHHHHHHHHH
Confidence 247899999999999999999999987764
No 234
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=87.75 E-value=1.4 Score=45.07 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.|..++....+++.|..+||+.+|++.+-|...+.++++++..++.+
T Consensus 119 ~Lp~~~r~v~~L~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~~~~~l~~ 169 (172)
T PRK12523 119 KLSSKARAAFLYNRLDGMGHAEIAERLGVSVSRVRQYLAQGLRQCYIALYG 169 (172)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 578899999999999999999999999999999999999999999887753
No 235
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.72 E-value=3.8 Score=44.66 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=33.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~ 325 (1033)
.+.++|+|+.|.|||+..--.++.++..|..-++|+. -+....+.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC--CCCHHHHHHHH
Confidence 4589999999999999954445556667877788883 22334444443
No 236
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.68 E-value=1 Score=53.57 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-----CC--eEEEecCChhhHHHHHHHHHh
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-----YS--NIFVTAPSPENLKTLFEFVCK 327 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-----~~--nI~VTAPs~env~tlFef~~k 327 (1033)
-|.-|+.++--++. ++-||+-|..|.||+.|-=+-+-..+..+ .. --+|-||+.|=...+++-+..
T Consensus 29 mTpVQa~tIPlll~-------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~ 101 (567)
T KOG0345|consen 29 MTPVQAATIPLLLK-------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQP 101 (567)
T ss_pred cCHHHHhhhHHHhc-------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHH
Confidence 38889998865543 45799999999999999877777777321 12 358889999988887766543
No 237
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=87.62 E-value=1.2 Score=42.92 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=42.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 908 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~ 908 (1033)
.|++.|..++....+++.++.+||+++|++.+.+-..+.++.+++-+.
T Consensus 110 ~L~~~~~~ii~~~~~~g~s~~eIA~~l~~s~~~v~~~~~~~~~kl~~~ 157 (158)
T TIGR02937 110 KLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRARKKLREL 157 (158)
T ss_pred hCCHHHHHHHhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 578889999888888999999999999999999999999888877543
No 238
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=87.59 E-value=1.5 Score=45.67 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=48.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.+..+++.+-+|+.++++||+.+|++.+-+...+.++.+++-+++.+.
T Consensus 106 ~L~~~~r~i~~l~~~~g~~~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 157 (181)
T PRK09637 106 ALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRVKLKELLEGC 157 (181)
T ss_pred hCCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999999999999999999999888764
No 239
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.54 E-value=2.2 Score=50.96 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=27.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCCeEEEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA--GYSNIFVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~--g~~nI~VTAPs~ 315 (1033)
..+++|+|+.|.|||.++-..+..+... +..=++||+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 3589999999999999885444444444 444467777643
No 240
>PRK12519 RNA polymerase sigma factor; Provisional
Probab=87.53 E-value=1.3 Score=46.19 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=48.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.+..+++...+++.+..+||+.+|++.+-|-..+.+++++|-+++.+.
T Consensus 141 ~L~~~~~~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l~~~ 192 (194)
T PRK12519 141 QLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVKARARQGLLKLRELLQDL 192 (194)
T ss_pred hCCHHHhhhhhhhhhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999888654
No 241
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=87.36 E-value=1.8 Score=44.89 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=51.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEI 917 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~~~~~ 917 (1033)
..|++.+..+++...+++.|..+||+.+|++.+-|...+.++.++|-+++.+....+.
T Consensus 121 ~~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l~~~~~~~~ 178 (185)
T PRK12542 121 KELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARKRVQNMIGGIQHDEF 178 (185)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 3588999999999999999999999999999999999999999999998876554443
No 242
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=87.32 E-value=8.1 Score=40.83 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=33.0
Q ss_pred CCccEEEEeccc------CCCHHHHHHhhc--CC--eEEEEecccCCCCCCcchhHHHHHHh
Q 001672 379 AQVELLVIDEAA------AIPLPVVRSLLG--PY--LVFLSSTVNGYEGTGRSLSLKLLHQL 430 (1033)
Q Consensus 379 ~~adLLvIDEAA------AIPlplL~~Ll~--~y--~V~lsSTI~GYEGTGRgfsLKf~~~L 430 (1033)
+++||||+||.- -||..-|..++. |. -||+ |||.-.=+++..-
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVl---------TGR~~p~~l~e~A 148 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVII---------TGRGCPQDLLELA 148 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEE---------ECCCCCHHHHHhC
Confidence 579999999998 899999989994 32 2443 8999876666554
No 243
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=87.27 E-value=1.5 Score=44.66 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++...+++.|..+||+.||++.+.+...+.++.++|-+++.
T Consensus 119 ~L~~~~r~i~~l~~~~g~s~~eiA~~lgis~~tv~~~l~Ra~~~Lr~~l~ 168 (169)
T TIGR02954 119 TLNDKYQTAIILRYYHDLTIKEIAEVMNKPEGTVKTYLHRALKKLKKRLE 168 (169)
T ss_pred hCCHHHhHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999988763
No 244
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=87.16 E-value=1.4 Score=45.51 Aligned_cols=64 Identities=8% Similarity=0.148 Sum_probs=49.1
Q ss_pred cceEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccc
Q 001672 612 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 691 (1033)
Q Consensus 612 ~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~ 691 (1033)
.|+=|--|=|.|+|||+|+||.+|+.+-+-.-
T Consensus 83 ~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~------------------------------------------------ 114 (163)
T KOG3216|consen 83 QGIYLEDLYVREQYRGKGIGSKLLKFVAEEAD------------------------------------------------ 114 (163)
T ss_pred ceEEEEeeEecchhcccChHHHHHHHHHHHHH------------------------------------------------
Confidence 45778889999999999999999998754211
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEe
Q 001672 692 LRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYV 727 (1033)
Q Consensus 692 l~e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvyl 727 (1033)
+..-.+++|+-.-+ +...+.||+|.|+..+-.
T Consensus 115 --~~G~~rv~w~vldw--N~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 115 --KLGTPRVEWVVLDW--NHRAILLYEKVGAQDLKE 146 (163)
T ss_pred --HcCCCcEEEEEecc--chhHHHHHHHhCccccce
Confidence 01235678888776 588999999999986543
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=87.16 E-value=0.8 Score=44.02 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=39.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-----CCCeEEEecCChhhHHHHHHHHHhhcc
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA-----GYSNIFVTAPSPENLKTLFEFVCKGFN 330 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~-----g~~nI~VTAPs~env~tlFef~~kgl~ 330 (1033)
++.++|+|+.|-|||+++=-.+...... ...-++|++|+..+...+++-+...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 63 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALG 63 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999987666655442 444589999999988888877765543
No 246
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=87.12 E-value=1.7 Score=45.40 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.+..+++...++++|..+||+++|++.+-+...+.++.++|-+++...
T Consensus 131 ~L~~~~r~v~~l~~~~g~s~~EIA~~lgis~~tvk~rl~Rar~~Lr~~l~~~ 182 (188)
T TIGR02943 131 HLPEQTARVFMMREVLGFESDEICQELEISTSNCHVLLYRARLSLRACLSIN 182 (188)
T ss_pred hCCHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999998888754
No 247
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=87.10 E-value=1.8 Score=43.17 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=58.4
Q ss_pred eEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCccccccc
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLR 693 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~ 693 (1033)
....-+...|+|+|+|||+.++.++.+|.-.... +
T Consensus 96 ~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~~-----------------------------------------l---- 130 (187)
T COG1670 96 LAEIGYWLDPEYWGKGYATEALRALLDYAFEELG-----------------------------------------L---- 130 (187)
T ss_pred eEEEEEEEChHHhcCchHHHHHHHHHHHhhhhcC-----------------------------------------c----
Confidence 4455566699999999999999999998532110 0
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCcceEEEEccCC
Q 001672 694 ERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLH 747 (1033)
Q Consensus 694 e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~imlk~L~ 747 (1033)
--.....+-.+..-.+..+|+||.............|++-..++..+.
T Consensus 131 ------~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~~~~~g~~~d~~~~~~~ 178 (187)
T COG1670 131 ------HRIEATVDPENEASIRVYEKLGFRLEGELRQHEFIKGRWRDTVLYSLL 178 (187)
T ss_pred ------eEEEEEecCCCHHHHHHHHHcCChhhhhhhhceeeCCeeeeEEEEEEe
Confidence 012234455578889999999999999877777777755544444443
No 248
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=87.06 E-value=1.7 Score=44.16 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++...+++.|.++||+++|++...+...+.++.++|-+.+.
T Consensus 112 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~ 161 (164)
T PRK12547 112 LLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRARNRLQELLK 161 (164)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999987764
No 249
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.01 E-value=2.1 Score=55.27 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG 304 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g 304 (1033)
.|.+.|..+++.+..++.. -++|+|+.|.||||..-. +|..+..|
T Consensus 191 Gr~~ei~~~i~~l~r~~~~-n~lLvG~pGvGKTal~~~-La~~i~~~ 235 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRRQN-NPILTGEAGVGKTAVVEG-LALRIAAG 235 (852)
T ss_pred CCHHHHHHHHHHHhcCCcC-ceeEECCCCCCHHHHHHH-HHHHHhhC
Confidence 4666688888876665544 567999999999998854 44444433
No 250
>PRK12526 RNA polymerase sigma factor; Provisional
Probab=86.88 E-value=1.7 Score=46.15 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=47.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.|..++....+++.|.++||+++|++.+.|...+.+++++|.+++.
T Consensus 152 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l~ 202 (206)
T PRK12526 152 EKLPEAQQTVVKGVYFQELSQEQLAQQLNVPLGTVKSRLRLALAKLKVQMG 202 (206)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999999999999999999988875
No 251
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=86.87 E-value=1.5 Score=45.04 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..++....+++.|.++||+.+|++.+.+...+.++.++|-.++..
T Consensus 136 ~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~~v~~~l~Rar~~Lr~~l~~ 186 (187)
T TIGR02948 136 ALPPKYRMVIVLKYMEDLSLKEISEILDLPVGTVKTRIHRGREALRKQLRH 186 (187)
T ss_pred hCCHHHhHHhhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 588999999999999999999999999999999999999999999888764
No 252
>CHL00181 cbbX CbbX; Provisional
Probab=86.83 E-value=4.7 Score=45.53 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCC
Q 001672 278 TVALLAARGRGKSAALGLAIAGAIAAGY 305 (1033)
Q Consensus 278 ~vvLTA~RGRGKSAaLGlaiA~~i~~g~ 305 (1033)
.++++|++|.|||++.-..+..+...|+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4899999999999987665555555565
No 253
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=86.82 E-value=1.6 Score=44.79 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=46.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+|+..-++++|+++||+.||++.+.+-..+.++.++|-+++..
T Consensus 136 ~L~~~~r~il~l~~~~~~s~~eIA~~lgis~~~v~~~l~Rar~~Lr~~l~~ 186 (187)
T PRK09641 136 QLPEKYRTVIVLKYIEDLSLKEISEILDLPVGTVKTRIHRGREALRKQLRH 186 (187)
T ss_pred hCCHHHHHHhhhHHhhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 478889999999899999999999999999999999999999999887754
No 254
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=86.78 E-value=1.8 Score=44.97 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=46.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
..|++.|..+++..-+++.|..+||+++|++.+-|...+.+++++|-+.+
T Consensus 138 ~~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l 187 (189)
T PRK09648 138 DTLPEKQREILILRVVVGLSAEETAEAVGSTPGAVRVAQHRALARLRAEI 187 (189)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999999999987765
No 255
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=86.72 E-value=1.1 Score=56.36 Aligned_cols=128 Identities=26% Similarity=0.326 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
...|..++..++. ....+||++.|-||++++ .+++.++..+-.++++.||+-.++..+-++. |..+....
T Consensus 321 ~~~q~~a~~vl~~-------de~smlt~~~~~~~~~~~-~~~~~l~~~~~~~~l~aa~tG~a~~~l~e~t--g~~a~ti~ 390 (696)
T COG0507 321 SLEQKEALDVLVV-------DEVSMLTGGPGTGKTTAI-KAIARLIKEGDGDQLLAAPTGKAAKRLNEST--GLEARTIH 390 (696)
T ss_pred CcccHHHHHHHhc-------CCeeEEeccCCcchHHHH-HHHHHHHHhcCCcEEeechhhHHHHHHHHhh--CcchhHHH
Confidence 3467776654332 457899999999999887 4677777777677999999999999999886 33322211
Q ss_pred ccccccccccCCCCCCcceEEEeeeeccceEEEEeCCcc--ccccCCccEEEEecccCCCHHHHHHhhc---CC-eEEEE
Q 001672 336 EHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHE--HEKLAQVELLVIDEAAAIPLPVVRSLLG---PY-LVFLS 409 (1033)
Q Consensus 336 e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~--~~~l~~adLLvIDEAAAIPlplL~~Ll~---~y-~V~ls 409 (1033)
... +..+.. .....++|++||||+.++-.-+...+.. .. .+++.
T Consensus 391 ~~~------------------------------~~~~~~~~~~~~~~~d~~iiDe~~ml~~~~~~~l~~~i~~~a~~i~v 440 (696)
T COG0507 391 RLL------------------------------GLWEKTGNNEEPLDGDLLIIDEASMLDTSLAFGLLSAIGKLAKVILV 440 (696)
T ss_pred HHH------------------------------hccccCCCCCCccccceeEEehhhhHHHHHhhhhhcccccCCeEEEe
Confidence 110 111111 1234578999999999999955555532 22 46666
Q ss_pred ecccCCCCCCcchh
Q 001672 410 STVNGYEGTGRSLS 423 (1033)
Q Consensus 410 STI~GYEGTGRgfs 423 (1033)
.-++--..-|-|.-
T Consensus 441 GD~~ql~~v~~g~~ 454 (696)
T COG0507 441 GDVDQLPSVGAGAV 454 (696)
T ss_pred CCHHhcCCCCCCch
Confidence 66655566666654
No 256
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.62 E-value=4.8 Score=49.00 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=37.1
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhc
Q 001672 281 LLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 281 LTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
|.|+-|.|||.+.=.+++.++..|. +++|-+|..+=+..+++-+.+.|
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g~-~vLvlvP~i~L~~Q~~~~l~~~f 49 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALGK-SVLVLVPEIALTPQMIQRFKYRF 49 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHHHHHHh
Confidence 6789999999886555666777774 79999999988888777666544
No 257
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=86.56 E-value=2.3 Score=47.12 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~ 325 (1033)
-..|.+++..=.+.+.+|..---|.|.|+||.|||++.--.++.....|..=|=|+=-....+-.|++-+
T Consensus 65 vd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~L 134 (287)
T COG2607 65 VDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELL 134 (287)
T ss_pred chHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHH
Confidence 4578888888888888887666799999999999999987777766677655666555555555555443
No 258
>PRK12546 RNA polymerase sigma factor; Provisional
Probab=86.45 E-value=1.6 Score=45.95 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=47.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.|..+++...+++.|.++||+.||++.+.+-..+.++.++|-+++...
T Consensus 113 ~Lp~~~r~v~~L~~~~g~s~~EIA~~LgiS~~tVk~~l~Rar~~Lr~~l~~~ 164 (188)
T PRK12546 113 QLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLAELLQLE 164 (188)
T ss_pred hCCHHHhHHhhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999998888643
No 259
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=86.40 E-value=1.7 Score=43.36 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=43.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 906 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~ 906 (1033)
.|++.|..++....+++.|..|||+.+|++.+.|...+.+++++|-
T Consensus 106 ~L~~~~r~ii~l~~~~~~s~~EIA~~l~is~~tV~~~~~ra~~~Lr 151 (154)
T PRK06759 106 VLDEKEKYIIFERFFVGKTMGEIALETEMTYYQVRWIYRQALEKMR 151 (154)
T ss_pred hCCHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999998874
No 260
>PRK09694 helicase Cas3; Provisional
Probab=86.39 E-value=2.2 Score=55.14 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=40.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCCeEEEecCChhhHHHHHHHHHh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA-GYSNIFVTAPSPENLKTLFEFVCK 327 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g~~nI~VTAPs~env~tlFef~~k 327 (1033)
...++|+|+-|-|||-|.-+++..++.. +..+||++.|....+..+|+-+..
T Consensus 301 pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 301 PGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 4478999999999999964444444444 457899999999999999887654
No 261
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=86.28 E-value=2 Score=45.06 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=46.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.+..++...-+++.|.++||++||++.+.+...+.+++++|-.++.
T Consensus 140 ~~Lp~~~r~v~~l~~~eg~s~~EIA~~lgis~~tVk~rl~ra~~~Lr~~l~ 190 (194)
T PRK12531 140 DRLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTVKSRLRLAVEKLRHSMD 190 (194)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhh
Confidence 357889999999999999999999999999999999999999999887764
No 262
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=86.19 E-value=1.5 Score=54.12 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~ 326 (1033)
...|..||.+.+. |..-+|-|+.|.||+.+.--.+-.++.++..+|+|+|||--+|..|-|=+.
T Consensus 412 N~SQ~~AV~~VL~-------rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 412 NASQSNAVKHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred chHHHHHHHHHHc-------CCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH
Confidence 4568888876543 556789999999998877666666777777899999999999999887664
No 263
>PRK12539 RNA polymerase sigma factor; Provisional
Probab=86.11 E-value=1.9 Score=44.65 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=47.2
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.+..+++-..+++.|.++||++||+|.+-+...+.++.++|-+++.
T Consensus 130 ~~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 180 (184)
T PRK12539 130 ARLPEKMRLAIQAVKLEGLSVAEAATRSGMSESAVKVSVHRGLKALAALIG 180 (184)
T ss_pred HhCCHHHHHHHHHHHHcCCcHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999999999999999999988774
No 264
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=86.10 E-value=1.6 Score=44.06 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=43.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTD 907 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~ 907 (1033)
.|++.|..+++...+++.|..+||+.+|++.+.+...+.++.+++..
T Consensus 113 ~L~~~~r~v~~L~~~~g~s~~EIA~~l~is~~tV~~~l~ra~~~~~~ 159 (161)
T PRK12528 113 GLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKAAMRCYF 159 (161)
T ss_pred HCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999988764
No 265
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=86.01 E-value=1.9 Score=44.27 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=46.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.+..+++...+++.|.++||++||++...|-..+.++.++|-+++.
T Consensus 128 ~~L~~~~r~i~~l~~~~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~ 178 (179)
T PRK12514 128 EELEKDRAAAVRRAYLEGLSYKELAERHDVPLNTMRTWLRRSLLKLRECLS 178 (179)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCCChHHHHHHHHHHHHHHHHHhc
Confidence 358889999999999999999999999999999999999999999887763
No 266
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.93 E-value=6 Score=48.88 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 298 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA 298 (1033)
.|..++.++..++..++....++++|++|-||+++.=+.+.
T Consensus 20 Gqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 20 GQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 48888888988898887777899999999999997755433
No 267
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=85.84 E-value=1.8 Score=46.03 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.2
Q ss_pred CccEEEEecccCCCHHHHH
Q 001672 380 QVELLVIDEAAAIPLPVVR 398 (1033)
Q Consensus 380 ~adLLvIDEAAAIPlplL~ 398 (1033)
..+.+||||+-.+|.-.+.
T Consensus 62 ~~~~liiDE~~~~~~g~l~ 80 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLL 80 (234)
T ss_pred cCCEEEEeccccCChHHHH
Confidence 4899999999999953333
No 268
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=85.84 E-value=2.2 Score=44.68 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+++..-+++.|.++||+.+|++.+.|...+.++.++|-+++..
T Consensus 134 ~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~l~~ 184 (189)
T PRK12530 134 HLPAQQARVFMMREYLELSSEQICQECDISTSNLHVLLYRARLQLQACLSK 184 (189)
T ss_pred hCCHHHHHHHhHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999888754
No 269
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=85.81 E-value=0.82 Score=55.50 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccc
Q 001672 257 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE 336 (1033)
Q Consensus 257 ~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e 336 (1033)
..|-..+.++..++..++......+||.||.|||++--+. |.++. ..|=-...|--+.- .-.=+..| .+-+
T Consensus 19 vGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~-AkalN--C~~~~~~ePC~~C~--~Ck~I~~g----~~~D 89 (515)
T COG2812 19 VGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARIL-AKALN--CENGPTAEPCGKCI--SCKEINEG----SLID 89 (515)
T ss_pred cccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHH-HHHhc--CCCCCCCCcchhhh--hhHhhhcC----Cccc
Confidence 3588888888888888877778899999999999965553 33332 11111111222111 10111122 0111
Q ss_pred cccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc----C--Ce-EEEE
Q 001672 337 HIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----P--YL-VFLS 409 (1033)
Q Consensus 337 ~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~----~--y~-V~ls 409 (1033)
-+.+|.-. +. .|.-.|.-+..++|.+- .+..-+.||||+=++--.--..||+ | |. -+||
T Consensus 90 viEiDaAS------n~---gVddiR~i~e~v~y~P~-----~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 90 VIEIDAAS------NT---GVDDIREIIEKVNYAPS-----EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred chhhhhhh------cc---ChHHHHHHHHHhccCCc-----cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEe
Confidence 11111111 11 12222344456667443 2357899999999998876666663 4 33 3578
Q ss_pred ec
Q 001672 410 ST 411 (1033)
Q Consensus 410 ST 411 (1033)
||
T Consensus 156 TT 157 (515)
T COG2812 156 TT 157 (515)
T ss_pred cC
Confidence 88
No 270
>PRK04217 hypothetical protein; Provisional
Probab=85.81 E-value=2.8 Score=41.12 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..|+..|..++.....++.|.++||+.+|++.+-+...++.+.++|.+++..-
T Consensus 41 ~~Lt~eereai~l~~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~~~ 93 (110)
T PRK04217 41 IFMTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEG 93 (110)
T ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999889999999999999999999999999999999998887643
No 271
>PRK12520 RNA polymerase sigma factor; Provisional
Probab=85.75 E-value=2.3 Score=44.30 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=48.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.|..+++...+++.|..+||+++|++.+-|...+.++.++|-+++...
T Consensus 131 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~ 182 (191)
T PRK12520 131 RLPPRTGRVFMMREWLELETEEICQELQITATNAWVLLYRARMRLRECLDLH 182 (191)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999998888643
No 272
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=85.72 E-value=2 Score=44.66 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=48.2
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 913 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~ 913 (1033)
..|++.+..++...-+++.|.++||+.||++.+.+-..+.++.++|-+++..+.
T Consensus 137 ~~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tv~~~l~Rar~~Lr~~l~~~~ 190 (193)
T PRK11923 137 QQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKALQPLL 190 (193)
T ss_pred HhCCHHHhHHHhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888888888999999999999999999999999999999999987653
No 273
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=85.59 E-value=2.3 Score=44.62 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=47.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.|..+++..-+++.|..|||++||++.+.|...+.++.++|-+++...
T Consensus 116 ~Lp~~~r~i~~L~~~~g~s~~EIA~~Lgis~~tVk~~l~Rar~~Lr~~l~~~ 167 (187)
T PRK12516 116 QLPDDQREAIILVGASGFAYEEAAEICGCAVGTIKSRVNRARQRLQEILQIE 167 (187)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999888643
No 274
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=85.56 E-value=2.1 Score=44.89 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.|..+|+...+++.|.++||++||++.+.|...+.++.++|-+++.
T Consensus 142 ~L~~~~r~vl~l~~~~~~s~~EIA~~Lgis~~tVk~~l~ra~~~Lr~~l~ 191 (194)
T PRK09646 142 ALTDTQRESVTLAYYGGLTYREVAERLAVPLGTVKTRMRDGLIRLRDCLG 191 (194)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999988774
No 275
>PF05729 NACHT: NACHT domain
Probab=85.56 E-value=1.5 Score=43.26 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC
Q 001672 277 STVALLAARGRGKSAALGLAIAGAIAAG 304 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i~~g 304 (1033)
|+++|+|+.|.|||+++--.+..+...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 5899999999999999976555555443
No 276
>PRK13919 putative RNA polymerase sigma E protein; Provisional
Probab=85.50 E-value=2.2 Score=44.08 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=46.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++...+++.|..+||+++|++.+.|-..+.++.++|-+.+.
T Consensus 135 ~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~~V~~~l~ra~~~Lr~~l~ 184 (186)
T PRK13919 135 ALSPEERRVIEVLYYQGYTHREAAQLLGLPLGTLKTRARRALSRLKEVLR 184 (186)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999887764
No 277
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=85.48 E-value=7.7 Score=53.61 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCC-CCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARG-RGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 334 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RG-RGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy 334 (1033)
+.+|..|+..+.. ......+|++.-| -|+.++|.-.+..+-..|| .|.+=||+-.++++|-+= .|++
T Consensus 415 ~~~~~~av~~~~q-----~~~~~~il~g~~G~aG~g~~l~~l~~~a~~~G~-~V~glAPt~~a~~~L~~~--~gi~---- 482 (1747)
T PRK13709 415 TAGYSDAVSVLAQ-----DRPSLAIVSGQGGAAGQRERVAELVMMAREQGR-EVQILAADRRSQMNLKQD--ERLS---- 482 (1747)
T ss_pred chhhhHHHHHHhc-----ccCcEEEEEcCCcchHHHHHHHHHHHHHHhCCc-EEEEEeCcHHHHHHHHHh--cCCC----
Confidence 4567676653221 2245788998888 4777777766666666787 799999999999887522 1211
Q ss_pred cccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhhc-----CCeEEEE
Q 001672 335 KEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG-----PYLVFLS 409 (1033)
Q Consensus 335 ~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll~-----~y~V~ls 409 (1033)
. +.+. + -+|+... ..+..-+++|||||-.++..-+.+|+. .-+|||.
T Consensus 483 -~----~Tva-----------~----------~~~l~~~--~~~~~~~ilIVDEAg~lsar~m~~Ll~~A~~~~arvVll 534 (1747)
T PRK13709 483 -G----ELIT-----------G----------RRQLQEG--MAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLIL 534 (1747)
T ss_pred -c----ceee-----------h----------hhhhccc--cCCCCCcEEEEECCCcCCHHHHHHHHHHHHHhCCEEEEE
Confidence 1 0000 0 0122211 112234799999999999998888884 2256555
Q ss_pred ecccCCCCCCcchh
Q 001672 410 STVNGYEGTGRSLS 423 (1033)
Q Consensus 410 STI~GYEGTGRgfs 423 (1033)
.+..=. |+|..|.
T Consensus 535 gd~~Q~-aAG~pf~ 547 (1747)
T PRK13709 535 DSGQRT-GTGSALM 547 (1747)
T ss_pred CCcccc-cccCHHH
Confidence 555545 6888873
No 278
>PRK13695 putative NTPase; Provisional
Probab=85.46 E-value=3.2 Score=42.65 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCC
Q 001672 279 VALLAARGRGKSAALGLAIAGAIAAGYS 306 (1033)
Q Consensus 279 vvLTA~RGRGKSAaLGlaiA~~i~~g~~ 306 (1033)
++|||+.|.|||+++...+..+...|+.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 6899999999999999776665555653
No 279
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=85.46 E-value=0.85 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.7
Q ss_pred eEEEEEeeCcccccCChHHHHHHH
Q 001672 614 ARIVRIATHPSAMRLGYGSTAVEL 637 (1033)
Q Consensus 614 ~RIVRIAvhPd~q~~GyGsraL~~ 637 (1033)
+-|-..|+||+||.+|||..+|.-
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ 125 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWR 125 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHH
Confidence 678889999999999999998875
No 280
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=85.41 E-value=2.5 Score=42.49 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=46.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..++....+++.|.++||+++|++.+-+-..+..+.++|-+.+.
T Consensus 105 ~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~l~ 154 (159)
T PRK12527 105 ELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAMKHCRVRMR 154 (159)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999988876
No 281
>PRK12525 RNA polymerase sigma factor; Provisional
Probab=85.40 E-value=2.3 Score=43.47 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=45.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++-..++++|.+|||++||++.+-+...++++++.+...+.
T Consensus 118 ~L~~~~r~v~~L~~~eg~s~~EIA~~l~is~~tV~~~l~ra~~~~~~~~~ 167 (168)
T PRK12525 118 GLSGKARAAFLMSQLEGLTYVEIGERLGVSLSRIHQYMVEAFKCCYQGFQ 167 (168)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 58899999999999999999999999999999999999999998877653
No 282
>COG1204 Superfamily II helicase [General function prediction only]
Probab=85.37 E-value=2.4 Score=54.03 Aligned_cols=139 Identities=22% Similarity=0.257 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccccc
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEH 337 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~ 337 (1033)
-|+.||..... + ..-++|+|+.|.|||..-=||+-..+..|-.+++-++|-.+=+...++-.. -|+.+|++-.
T Consensus 35 ~qq~av~~~~~---~---~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~ 107 (766)
T COG1204 35 PQQEAVEKGLL---S---DENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFS-RLEELGIRVG 107 (766)
T ss_pred HHHHHhhcccc---C---CCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEE
Confidence 47777765432 2 346899999999999877777777777655678999999988888876665 5566665431
Q ss_pred ---ccccccccCCCCC-CcceEEEeeeeccceEEEEeCCcccc--------ccCCccEEEEecccCCCHH--------HH
Q 001672 338 ---IDYDIVRSSNPDL-RKPIVRINIYRQHRQTIQYMEPHEHE--------KLAQVELLVIDEAAAIPLP--------VV 397 (1033)
Q Consensus 338 ---~dy~i~~s~~p~~-~~ai~ri~~~~~h~q~Iqyi~Pd~~~--------~l~~adLLvIDEAAAIPlp--------lL 397 (1033)
-||+. .+++ .++ -|-=..|+-+. -....++|||||+=.|.=+ ++
T Consensus 108 ~~TgD~~~----~~~~l~~~------------~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv 171 (766)
T COG1204 108 ISTGDYDL----DDERLARY------------DVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIV 171 (766)
T ss_pred EecCCccc----chhhhccC------------CEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHH
Confidence 12221 0000 011 01111221110 1235899999999888766 34
Q ss_pred HHhhc--C-C-eEEEEecccCCCCCC
Q 001672 398 RSLLG--P-Y-LVFLSSTVNGYEGTG 419 (1033)
Q Consensus 398 ~~Ll~--~-y-~V~lsSTI~GYEGTG 419 (1033)
.++.. + . +|=+|-|+.+||-.|
T Consensus 172 ~r~~~~~~~~rivgLSATlpN~~evA 197 (766)
T COG1204 172 ARMRRLNELIRIVGLSATLPNAEEVA 197 (766)
T ss_pred HHHHhhCcceEEEEEeeecCCHHHHH
Confidence 44432 1 3 466999999998544
No 283
>PRK12534 RNA polymerase sigma factor; Provisional
Probab=85.30 E-value=2.2 Score=44.16 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=46.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..++....+++.|.++||+.||++.+.+...+.++.++|-.++.
T Consensus 137 ~L~~~~r~i~~l~~~~g~s~~eIA~~lgis~~~v~~~l~Rar~~Lr~~l~ 186 (187)
T PRK12534 137 ELEPPRSELIRTAFFEGITYEELAARTDTPIGTVKSWIRRGLAKLKACLE 186 (187)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCChhHHHHHHHHHHHHHHHHHc
Confidence 57888999999999999999999999999999999999999999988763
No 284
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=85.10 E-value=2.2 Score=53.60 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C--CCeEEEecCChhhHHHHHHHHHhhc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-G--YSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g--~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
.+.+|.+||.. ...+++++|+.|.|||++|=--+|.++.. | ..+|++.+.+..+++.+-+-+.+-+
T Consensus 3 Ln~~Q~~av~~---------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 3 LNPGQQQAVEF---------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCHHHHHHHhC---------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 46788887742 13478899999999999999999999974 6 3579999999999999877665543
No 285
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.01 E-value=2.7 Score=54.21 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 001672 257 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA 302 (1033)
Q Consensus 257 ~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~ 302 (1033)
..|.+.|..+++.+..++ +...+|+|++|.|||+.+- ++|..+.
T Consensus 176 igr~~ei~~~~~~l~r~~-~~n~lL~G~pGvGKT~l~~-~la~~i~ 219 (852)
T TIGR03346 176 IGRDEEIRRTIQVLSRRT-KNNPVLIGEPGVGKTAIVE-GLAQRIV 219 (852)
T ss_pred CCcHHHHHHHHHHHhcCC-CCceEEEcCCCCCHHHHHH-HHHHHHh
Confidence 346667888887776654 4456799999999999884 4454443
No 286
>PRK09415 RNA polymerase factor sigma C; Reviewed
Probab=85.00 E-value=2.2 Score=44.05 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.|..+++...+++.|..+||+.+|++.+.+...+.++.++|-+++.+
T Consensus 127 ~L~~~~r~v~~l~~~~g~s~~EIA~~l~is~~tv~~~l~Ra~~~Lr~~l~~ 177 (179)
T PRK09415 127 SLPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKELLKKGLEE 177 (179)
T ss_pred hCCHHHhhHhHhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999887753
No 287
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=84.84 E-value=1.1 Score=46.31 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=54.0
Q ss_pred EEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccc
Q 001672 615 RIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRE 694 (1033)
Q Consensus 615 RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e 694 (1033)
-|.-++|.|+|||.|+|+.+++.|++--+-+... +..|
T Consensus 71 HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~----------------------------------------fvDL-- 108 (173)
T KOG3234|consen 71 HVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAY----------------------------------------FVDL-- 108 (173)
T ss_pred EEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhh----------------------------------------eeee--
Confidence 5788999999999999999999987642211000 0000
Q ss_pred cCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCC-CCcceEEEEccCCcc
Q 001672 695 RQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAV-TGEHTCMVLKPLHSE 749 (1033)
Q Consensus 695 ~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~-tGEhS~imlk~L~~~ 749 (1033)
|+-+ -+.-.+.||++.||+.-+--..+... --||+.=|=|+|+-|
T Consensus 109 -------fVr~---sN~iAI~mYkkLGY~~YR~Vi~YY~~g~deda~dMRKalSrD 154 (173)
T KOG3234|consen 109 -------FVRV---SNQIAIDMYKKLGYSVYRTVIEYYSVGPDEDAYDMRKALSRD 154 (173)
T ss_pred -------eeec---cchhHHHHHHhcCceEEEeeeeeeccCCCcchHhhhhhhccC
Confidence 0111 14668999999999865433333221 248888898998863
No 288
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.84 E-value=2.6 Score=41.33 Aligned_cols=85 Identities=27% Similarity=0.369 Sum_probs=46.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcceEEE
Q 001672 278 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRI 357 (1033)
Q Consensus 278 ~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ri 357 (1033)
+|+|+|+.|.|||++.=.. |.++ ++.-+.|.-++--....|+ | .|++. ++
T Consensus 1 ~vlL~G~~G~GKt~l~~~l-a~~~--~~~~~~i~~~~~~~~~dl~-----g----------~~~~~---~~--------- 50 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAREL-AALL--GRPVIRINCSSDTTEEDLI-----G----------SYDPS---NG--------- 50 (139)
T ss_dssp EEEEEESSSSSHHHHHHHH-HHHH--TCEEEEEE-TTTSTHHHHH-----C----------EEET----TT---------
T ss_pred CEEEECCCCCCHHHHHHHH-HHHh--hcceEEEEeccccccccce-----e----------eeeec---cc---------
Confidence 5899999999999977543 3333 5555556655555554544 1 01110 00
Q ss_pred eeeeccceEEEEeCCcccc-ccCCccEEEEecccCCCHHHHHHhh
Q 001672 358 NIYRQHRQTIQYMEPHEHE-KLAQVELLVIDEAAAIPLPVVRSLL 401 (1033)
Q Consensus 358 ~~~~~h~q~Iqyi~Pd~~~-~l~~adLLvIDEAAAIPlplL~~Ll 401 (1033)
...|. |..+. ...+..++|+||.-..+..++..|+
T Consensus 51 --------~~~~~-~~~l~~a~~~~~il~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 51 --------QFEFK-DGPLVRAMRKGGILVLDEINRAPPEVLESLL 86 (139)
T ss_dssp --------TTCEE-E-CCCTTHHEEEEEEESSCGG--HHHHHTTH
T ss_pred --------ccccc-cccccccccceeEEEECCcccCCHHHHHHHH
Confidence 00111 11121 1225789999999999988777665
No 289
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.75 E-value=8.3 Score=48.93 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
.|..++..+..++..++....++++|++|-||+++.=+.
T Consensus 22 GQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 22 GQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 478888888888888877778899999999999976544
No 290
>PRK12543 RNA polymerase sigma factor; Provisional
Probab=84.66 E-value=2.9 Score=43.14 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=48.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhch
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISS 914 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~~ 914 (1033)
.|++.+..+++..-+++.|..+||+.+|++.+-+...+.++..+|-+.+....+
T Consensus 117 ~Lp~~~r~i~~l~~~e~~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~~ 170 (179)
T PRK12543 117 KLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSRIHAALKKLRQKEQIEEI 170 (179)
T ss_pred hCCHHHHHHHHHHHHccCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999888876533
No 291
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.58 E-value=3.8 Score=48.06 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=25.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-Hc--CCCeEEEecC
Q 001672 277 STVALLAARGRGKSAALGLAIAGAI-AA--GYSNIFVTAP 313 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i-~~--g~~nI~VTAP 313 (1033)
.+++|.|++|.|||.++- |++..+ .. +..=++||+.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEHH
Confidence 589999999999999984 455443 33 3444677653
No 292
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=84.50 E-value=2.7 Score=43.88 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=47.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+++...+++.|..+||++||++.+-+...+.++.++|-+++..
T Consensus 111 ~Lp~~~R~v~~L~~~~g~s~~EIA~~Lgis~~tV~~~l~RAr~~Lr~~l~~ 161 (182)
T PRK12540 111 KLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYV 161 (182)
T ss_pred hCCHHHHHHhhHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999888864
No 293
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=84.46 E-value=7.7 Score=49.97 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCCeEEEecCChhhHHHHHHHHHhhcc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA---GYSNIFVTAPSPENLKTLFEFVCKGFN 330 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~---g~~nI~VTAPs~env~tlFef~~kgl~ 330 (1033)
.|.=|.+++..++ +| +.++++.|.-|.|||+++.+.+- .+.. ...+++.+.|+.+=+..+++-+.+-.+
T Consensus 16 PtpiQ~~~i~~il----~G--~~~v~~~apTGSGKTaa~aafll-~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 16 PFPWQLSLAERFV----AG--QPPESCSTPTGLGKTSIIAAWLL-AVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred CCHHHHHHHHHHH----cC--CCcceEecCCCCcccHHHHHhhc-cccccccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 4778999887543 33 44788899999999998632211 1211 133566799999998888877655444
No 294
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Probab=84.38 E-value=2 Score=42.97 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=44.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 908 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~ 908 (1033)
..|++.+..++....+++.+..+||+.+|++.+.+-..+.++.++|-++
T Consensus 110 ~~L~~~~r~v~~l~~~~g~~~~eIA~~l~is~~tv~~~l~Rar~~Lr~~ 158 (159)
T TIGR02989 110 EKLPERQRELLQLRYQRGVSLTALAEQLGRTVNAVYKALSRLRVRLRDC 158 (159)
T ss_pred HHCCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 3589999999999999999999999999999999999999988887654
No 295
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.37 E-value=5.7 Score=44.58 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG 299 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ 299 (1033)
|.|-.+. ..+++.+... +++++|+|+.|.|||+.+.-.+..
T Consensus 16 T~dt~r~-~~ll~~l~~~--~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 16 TVDTVRY-SYLLDLLLSN--GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp -HHHHHH-HHHHHHHHHC--TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cHHHHHH-HHHHHHHHHc--CCcEEEECCCCCchhHHHHhhhcc
Confidence 6666663 3466665543 679999999999999988665543
No 296
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=84.34 E-value=2.5 Score=42.56 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=46.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++...+++.|..+||+.+|++.+.|-..+.++.++|-+++.
T Consensus 110 ~L~~~~r~i~~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 159 (162)
T TIGR02983 110 RLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRALARLRELLE 159 (162)
T ss_pred hCCHHHHHHhhhHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999999887764
No 297
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=84.28 E-value=2.9 Score=42.66 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++..-+++.|..|||+.||++.+-+-..+.++.++|-+.+.
T Consensus 118 ~L~~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 167 (173)
T PRK09645 118 QLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYALRALRLALQ 167 (173)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 58899999999999999999999999999999999999999999888775
No 298
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=84.28 E-value=2.4 Score=42.01 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=43.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 908 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~ 908 (1033)
.|++.+..++....+++.|+.+||+.+|++.+.+-..+..+.++|-+.
T Consensus 113 ~L~~~~r~il~l~~~~~~~~~eIA~~lgis~~tv~~~~~ra~~~Lr~~ 160 (161)
T TIGR02985 113 KLPEQCRKIFILSRFEGKSYKEIAEELGISVKTVEYHISKALKELRKE 160 (161)
T ss_pred HCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 478889999988899999999999999999999999999998887654
No 299
>PRK12545 RNA polymerase sigma factor; Provisional
Probab=84.28 E-value=2.8 Score=44.35 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=47.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++..-++++|..+||+.+|++.+-+...+.++.++|-+++.
T Consensus 139 ~Lp~~~r~v~~L~~~eg~s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~l~ 188 (201)
T PRK12545 139 HLPEQIGRVFMMREFLDFEIDDICTELTLTANHCSVLLYRARTRLRTCLS 188 (201)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999998885
No 300
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=84.22 E-value=2.6 Score=53.76 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 334 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy 334 (1033)
.+.-|..+...+ .+| + +..+..|-|||.+..|+++.....|. .+.|.+|+.+=++.-++.+..-++.+|+
T Consensus 79 p~~vQl~~~~~l----~~G--~---Iaem~TGeGKTL~a~lp~~l~al~G~-~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 79 PYDVQLIGALVL----HEG--N---IAEMQTGEGKTLTATMPLYLNALEGK-GVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred CchHHHHhHHHH----cCC--c---eeeecCCCcchHHHHHHHHHHHHcCC-CeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 355566655422 233 2 89999999999999988875555674 6999999999888888887777777765
Q ss_pred c
Q 001672 335 K 335 (1033)
Q Consensus 335 ~ 335 (1033)
.
T Consensus 149 ~ 149 (790)
T PRK09200 149 T 149 (790)
T ss_pred e
Confidence 4
No 301
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=84.21 E-value=2.6 Score=43.65 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
..|++.++.+++...+++.|.++||+++|++.+.|-..+.++.++|-+++
T Consensus 132 ~~L~~~~r~i~~l~~~~~~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 181 (182)
T PRK12537 132 EQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAWIKRSLKALRECM 181 (182)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999999999999999999999887765
No 302
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.20 E-value=7.9 Score=47.56 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 300 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~ 300 (1033)
.|..++..+...+..++.....+++|++|.||+++.=..+..+
T Consensus 18 Gqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 18 GQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 4777777888888888777778999999999998775544433
No 303
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=84.12 E-value=2.8 Score=42.49 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=46.9
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
..|++.|..+++...+++.|..+||++||++.+.+...+.++.++|-+++..
T Consensus 107 ~~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~tv~~~l~Rar~~Lr~~l~~ 158 (165)
T PRK09644 107 HTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLKALLKE 158 (165)
T ss_pred HhCCHHHHHHHHhHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3588999999999999999999999999999999999999999988887753
No 304
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=84.09 E-value=7.3 Score=44.90 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~ 315 (1033)
.+.+.|.|+.|.|||+..-.+++.+...|..-+||+++..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~ 94 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 94 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence 4588899999999999977777777777766689988643
No 305
>TIGR02984 Sig-70_plancto1 RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are apparently found only in the Planctomycetaceae family including the genuses Gemmata and Pirellula (in which seven sequences are found).
Probab=84.00 E-value=2.9 Score=42.93 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=45.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.+..+++..-+++.|..+||.+||++.+.+...+.++.++|-+.+
T Consensus 140 ~L~~~~r~vi~l~~~~g~s~~eIA~~lgis~~~v~~~l~Ra~~~Lr~~l 188 (189)
T TIGR02984 140 KLPEDYREVILLRHLEGLSFAEVAERMDRSEGAVSMLWVRGLARLRQIL 188 (189)
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999998887654
No 306
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.97 E-value=8.4 Score=48.97 Aligned_cols=139 Identities=16% Similarity=0.199 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHh--hcccccc
Q 001672 257 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCK--GFNAIEY 334 (1033)
Q Consensus 257 ~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~k--gl~aLgy 334 (1033)
.=|.+||..+.. .++. +.-+|..+-|.|||-. |++++..+ + .+++|-+|+...+..--+-+.+ .++....
T Consensus 258 pYQ~eAl~~~~~---~gr~-r~GIIvLPtGaGKTlv-ai~aa~~l--~-k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 258 PYQEKSLSKMFG---NGRA-RSGIIVLPCGAGKSLV-GVTAACTV--K-KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred HHHHHHHHHHHh---cCCC-CCcEEEeCCCCChHHH-HHHHHHHh--C-CCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 359999876642 3322 2357789999999875 66665544 2 4688888988876554432222 1111000
Q ss_pred cccccccccccCCCC-C-CcceEEEeeeeccceEEEEeCCc--c----cccc--CCccEEEEecccCCCHHHHHHhhc--
Q 001672 335 KEHIDYDIVRSSNPD-L-RKPIVRINIYRQHRQTIQYMEPH--E----HEKL--AQVELLVIDEAAAIPLPVVRSLLG-- 402 (1033)
Q Consensus 335 ~e~~dy~i~~s~~p~-~-~~ai~ri~~~~~h~q~Iqyi~Pd--~----~~~l--~~adLLvIDEAAAIPlplL~~Ll~-- 402 (1033)
.. ..+...+ + ... .|.|.. .+++....+. + +..+ ..++|||+|||=-+|-+..++++.
T Consensus 330 -----~~-~tg~~k~~~~~~~--~VvVtT--Yq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l 399 (732)
T TIGR00603 330 -----CR-FTSDAKERFHGEA--GVVVST--YSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIV 399 (732)
T ss_pred -----EE-EecCcccccccCC--cEEEEE--HHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhc
Confidence 00 0011100 0 001 111110 1122111110 0 1112 358999999999999999887663
Q ss_pred --CCeEEEEeccc
Q 001672 403 --PYLVFLSSTVN 413 (1033)
Q Consensus 403 --~y~V~lsSTI~ 413 (1033)
+|++-|+-|--
T Consensus 400 ~a~~RLGLTATP~ 412 (732)
T TIGR00603 400 QAHCKLGLTATLV 412 (732)
T ss_pred CcCcEEEEeecCc
Confidence 46777788853
No 307
>PRK12522 RNA polymerase sigma factor; Provisional
Probab=83.94 E-value=3 Score=42.68 Aligned_cols=52 Identities=10% Similarity=0.030 Sum_probs=47.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.+..+++..-++++|.++||+.+|++.+.+-..+.++.++|-+++.+.
T Consensus 119 ~L~~~~r~i~~l~~~~~~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l~~~ 170 (173)
T PRK12522 119 LLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMREHLEGF 170 (173)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999999999999999999999999999999999888764
No 308
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.
Probab=83.67 E-value=1.2 Score=44.26 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=43.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.+..+++..-+++.|+++||+.+|++.+.+-..+.++.++|-+.+
T Consensus 105 ~L~~~~r~i~~l~~~~g~s~~eIA~~lgis~~tv~~~l~Ra~~~Lr~~l 153 (154)
T TIGR02950 105 RLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKLL 153 (154)
T ss_pred hCCHhheeeeeehhhccCcHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888899999999999999999999999999998887754
No 309
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=83.56 E-value=2.9 Score=52.92 Aligned_cols=66 Identities=18% Similarity=0.113 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C--CCeEEEecCChhhHHHHHHHHHhhc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-G--YSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g--~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
.+.+|.+||.. ...+++|.|+.|.|||.+|=--+|.++.. | ..+|++.+-+..+++.+-+-+.+.+
T Consensus 10 Ln~~Q~~av~~---------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 10 LNDKQREAVAA---------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred cCHHHHHHHhC---------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 47789887741 13489999999999999999889999974 5 4589999999999999888776654
No 310
>PRK08301 sporulation sigma factor SigE; Reviewed
Probab=83.49 E-value=2.9 Score=45.13 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=46.8
Q ss_pred CCccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~g----LQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..|++.|..+++..- +++.|..+||+.+|++.+.|-..+.+++++|-+.+..+
T Consensus 177 ~~Lp~~~R~v~~L~y~l~~~eg~s~~EIA~~lgis~~tVk~~~~rA~~~Lr~~l~~~ 233 (234)
T PRK08301 177 KKLSDREKQIMELRFGLNGGEEKTQKEVADMLGISQSYISRLEKRIIKRLKKEINKM 233 (234)
T ss_pred HhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 358899988888876 79999999999999999999999999999998877654
No 311
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=83.48 E-value=1.3 Score=56.65 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=42.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 280 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 280 vLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
+..+..|-|||.+..|+++.....|+ .+.|.+|+..=++.-++....-++.||..
T Consensus 98 Iaem~TGeGKTLva~lpa~l~aL~G~-~V~IvTpn~yLA~rd~e~~~~l~~~LGls 152 (830)
T PRK12904 98 IAEMKTGEGKTLVATLPAYLNALTGK-GVHVVTVNDYLAKRDAEWMGPLYEFLGLS 152 (830)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHHHhhcCCe
Confidence 67788899999999998875445675 58899999987777777776666666654
No 312
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.46 E-value=16 Score=45.80 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
.|..++..+..++..++....++++|++|.||+++.=..
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHH
Confidence 477777778888877766667899999999999976543
No 313
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=83.44 E-value=6.4 Score=46.11 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCCeEEEecCChh
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-----AGYSNIFVTAPSPE 316 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~-----~g~~nI~VTAPs~e 316 (1033)
+...|.=|+..+++ - .=..|.|+|.-|.|||.+ |+|+++. ..|.+|+||=|.+.
T Consensus 229 rn~eQ~~ALdlLld----~-dI~lV~L~G~AGtGKTlL---ALaAgleqv~e~~~y~KiiVtRp~vp 287 (436)
T COG1875 229 RNAEQRVALDLLLD----D-DIDLVSLGGKAGTGKTLL---ALAAGLEQVLERKRYRKIIVTRPTVP 287 (436)
T ss_pred ccHHHHHHHHHhcC----C-CCCeEEeeccCCccHhHH---HHHHHHHHHHHHhhhceEEEecCCcC
Confidence 45678888775544 1 134799999999999863 3444443 24889999999753
No 314
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=83.42 E-value=2.9 Score=52.12 Aligned_cols=66 Identities=26% Similarity=0.243 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C--CCeEEEecCChhhHHHHHHHHHhhc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-G--YSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g--~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
.|.+|.+||.. ...++++.|+.|.|||++|=--++.++.. | ..+|++.+.+..++..+-+-+.+.+
T Consensus 2 Ln~~Q~~av~~---------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY---------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC---------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 36788886641 13478999999999999999999999864 4 3579999999999988877776544
No 315
>PRK06288 RNA polymerase sigma factor WhiG; Reviewed
Probab=83.41 E-value=2.9 Score=46.42 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=49.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS 913 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~ 913 (1033)
..|++.++.++....++++|..+||+++|++.+.+...+.+++++|-+++..+.
T Consensus 211 ~~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 264 (268)
T PRK06288 211 KTLPEREKKVLILYYYEDLTLKEIGKVLGVTESRISQLHTKAVLQLRAKLAEIK 264 (268)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999999999999999999999987654
No 316
>PRK11054 helD DNA helicase IV; Provisional
Probab=83.40 E-value=2.8 Score=52.82 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CCeEEEecCChhhHHHHHHHHHhhc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG---YSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g---~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
.|.+|.+||.. .+ ..++|+|+-|.|||++|=--+|.++..+ ..+|++.|.+..+++.+-+-+...+
T Consensus 197 L~~~Q~~av~~-----~~----~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 197 LNPSQARAVVN-----GE----DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCHHHHHHHhC-----CC----CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 58899998852 12 2578999999999999977777777654 3489999999999999988776544
No 317
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=83.40 E-value=2.7 Score=43.33 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=47.3
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
..|++.++.++.-.-+++.+.++||+.+|++.+.+-..+.++.++|-+++..
T Consensus 137 ~~L~~~~r~v~~l~~~~~~s~~EIA~~lgis~~tv~~~l~rar~~Lr~~l~~ 188 (190)
T TIGR02939 137 EALPEDLRTAITLRELEGLSYEDIARIMDCPVGTVRSRIFRAREAIAIRLRP 188 (190)
T ss_pred HcCCHHHhhhhhhhhhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 3578889999999899999999999999999999999999999999988864
No 318
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=83.08 E-value=3.7 Score=47.76 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|.+++..|..++..++....++++|++|-||+++.= .+|..+
T Consensus 27 Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~-~lA~~L 69 (351)
T PRK09112 27 GHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAF-HLANHI 69 (351)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHH-HHHHHH
Confidence 5888888889989888777789999999999998664 444444
No 319
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=83.05 E-value=8.3 Score=42.13 Aligned_cols=66 Identities=21% Similarity=0.055 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHH------hcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC----CeEEEecCChhhHHHHHHHH
Q 001672 259 QGKAVITFLDAI------LDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY----SNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 259 Q~~av~~~~~~i------~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~----~nI~VTAPs~env~tlFef~ 325 (1033)
|.++|.-+++.. ......+-.+|--+-|-|||.....++..+...+. ..++|.+|+ .-+.+-.+.+
T Consensus 2 Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~ 77 (299)
T PF00176_consen 2 QLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEI 77 (299)
T ss_dssp HHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhh
Confidence 667776555543 11122446777778999999766555554555432 248888888 4444433333
No 320
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=82.94 E-value=2.8 Score=52.95 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C--CCeEEEecCChhhHHHHHHHHHhhc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-G--YSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g--~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
.+.+|.+||.. ...+++|.|+.|.|||.+|=--+|.++.. | ..+|++.+.+..+++.+-+-+.+.+
T Consensus 5 Ln~~Q~~av~~---------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 5 LNDKQREAVAA---------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cCHHHHHHHcC---------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 47788887741 13489999999999999998888999875 5 4689999999999999888776654
No 321
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=82.94 E-value=16 Score=37.68 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHH
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLA 296 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGla 296 (1033)
|.+++..+...+..++....++++|++|.||+++.-..
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~ 39 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAF 39 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHH
Confidence 66777778888888888888999999999998865433
No 322
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=82.84 E-value=4.5 Score=32.89 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=36.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 905 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl 905 (1033)
.|++.|..++. ...++++..+||+++|++...+...++++.+++
T Consensus 3 ~l~~~e~~i~~-~~~~g~s~~eia~~l~is~~tv~~~~~~~~~kl 46 (58)
T smart00421 3 SLTPREREVLR-LLAEGLTNKEIAERLGISEKTVKTHLSNIMRKL 46 (58)
T ss_pred CCCHHHHHHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 47787777654 478999999999999999988888877776665
No 323
>PHA02535 P terminase ATPase subunit; Provisional
Probab=82.80 E-value=23 Score=44.02 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHH-HHHhc--------ccCCcEEEEEeCCCCCHHHHHHHHH-HHHHHcCCCeEEEecCChhhHHHHHH
Q 001672 254 CSTLDQGKAVITFL-DAILD--------KTLRSTVALLAARGRGKSAALGLAI-AGAIAAGYSNIFVTAPSPENLKTLFE 323 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~-~~i~e--------k~~r~~vvLTA~RGRGKSAaLGlai-A~~i~~g~~nI~VTAPs~env~tlFe 323 (1033)
.-|..|...+.++. +.+.. +...++-+++-.|=-|||-+...-+ -.++..|. |.+.-|||.+....+.+
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~G~-nqiflSas~~QA~~f~~ 200 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLTGR-NQIFLSASKAQAHVFKQ 200 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhcCC-ceEEECCCHHHHHHHHH
Confidence 34666766665554 33322 2124577899999999999866433 34566674 66678999999998777
Q ss_pred HHHhhccc-ccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCH
Q 001672 324 FVCKGFNA-IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPL 394 (1033)
Q Consensus 324 f~~kgl~a-Lgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPl 394 (1033)
.+.+-... ++ -++. .. .| .+ ..+.+|.|++-.....-+..--|+|||||=||=
T Consensus 201 yi~~~a~~~~~------v~l~--~~--------~I-~f-~nGa~I~fLstn~~taqg~~G~vylDE~aw~~d 254 (581)
T PHA02535 201 YIIAFAREAAD------VELT--GD--------PI-IL-PNGAELHFLGTNANTAQSYHGNVYFDEYFWIPK 254 (581)
T ss_pred HHHHHHHhhcC------ceee--cc--------eE-Ee-cCCCEEEEecCCCccccccCCCEEEEehhccCC
Confidence 75443222 11 1110 11 11 12 256789998743221111123499999999997
No 324
>PRK06930 positive control sigma-like factor; Validated
Probab=82.77 E-value=3.8 Score=42.98 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=47.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+++...++++|..+||+.+|++.+.+-..+.++.++|-+.+..
T Consensus 114 ~L~~rer~V~~L~~~eg~s~~EIA~~lgiS~~tVk~~l~Ra~~kLr~~l~~ 164 (170)
T PRK06930 114 VLTEREKEVYLMHRGYGLSYSEIADYLNIKKSTVQSMIERAEKKIARQINE 164 (170)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999887764
No 325
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.70 E-value=9.2 Score=47.40 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|.+++..+..++..++....++++|+||-||+++.=+ +|.++
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~-lak~l 62 (576)
T PRK14965 20 GQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARI-LAKAL 62 (576)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH-HHHhh
Confidence 47777778888888877777789999999999997644 44433
No 326
>PHA00729 NTP-binding motif containing protein
Probab=82.52 E-value=5.4 Score=43.80 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=18.9
Q ss_pred HHHHHhcccCCcEEEEEeCCCCCHHHHH
Q 001672 266 FLDAILDKTLRSTVALLAARGRGKSAAL 293 (1033)
Q Consensus 266 ~~~~i~ek~~r~~vvLTA~RGRGKSAaL 293 (1033)
+++.+.++.. ..++|||..|.|||++.
T Consensus 8 ~~~~l~~~~f-~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 8 IVSAYNNNGF-VSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHhcCCe-EEEEEECCCCCCHHHHH
Confidence 4444544433 36899999999999843
No 327
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=82.49 E-value=3.5 Score=43.05 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=45.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++..-+++.|.++||+.+|++.+-+...+.++.++|-+++.
T Consensus 136 ~L~~~~r~i~~L~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l~ 185 (195)
T PRK12532 136 NLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCLQ 185 (195)
T ss_pred hCCHHHHHHhhhHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999988888774
No 328
>PRK09647 RNA polymerase sigma factor SigE; Reviewed
Probab=82.39 E-value=3.7 Score=43.76 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=47.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.++.+++..-+++.+..+||+.||++.+-+...+.++.++|-+++...
T Consensus 138 ~L~~~~r~v~~L~~~~g~s~~EIA~~Lgis~~tV~~~l~RArk~Lr~~l~~~ 189 (203)
T PRK09647 138 SLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQQLRAALAAH 189 (203)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888999999999999999999999999999999999999999999888643
No 329
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=82.24 E-value=3.9 Score=42.47 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
..|++.+..+|...-+++.|.++||+.+|++.+.+-..+.++.++|-+++..
T Consensus 130 ~~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~ 181 (189)
T PRK12515 130 AKLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTRMFYARKKLAELLKA 181 (189)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999888763
No 330
>PRK12533 RNA polymerase sigma factor; Provisional
Probab=82.20 E-value=3.2 Score=44.86 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=48.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..|++.+..+++..-+++.|..|||+.||++.+-|...+.++.++|-+++.+.
T Consensus 133 ~~Lp~~~R~v~~L~y~eg~s~~EIAe~LgiS~~tVk~~L~RAr~~Lr~~l~~~ 185 (216)
T PRK12533 133 AKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLARARRRLAALLGGA 185 (216)
T ss_pred HcCCHHHHhHhhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 35889999999999999999999999999999999999999999999998654
No 331
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.
Probab=82.15 E-value=2.1 Score=44.73 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.+..+++..-+++.|..+||+.+|++.+.|...+.++.++|-+++...
T Consensus 131 ~Lp~~~r~i~~L~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~l~~~ 182 (193)
T TIGR02947 131 GLPEEFRQAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRKQLRKQLVDV 182 (193)
T ss_pred hCCHHHhhheeehhhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888899999999999999999999999999999999999999888654
No 332
>TIGR02980 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.
Probab=82.10 E-value=3.5 Score=44.27 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=45.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
..|++.|..++....+++.|..+||+.+|++.+.+-..+++++++|-+++
T Consensus 177 ~~L~~~~r~vl~l~y~~~~s~~eIA~~lgis~~~v~~~~~ra~~~Lr~~l 226 (227)
T TIGR02980 177 AALPERERRILLLRFFEDKTQSEIAERLGISQMHVSRLLRRALKKLREQL 226 (227)
T ss_pred HcCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999999999987654
No 333
>PRK12511 RNA polymerase sigma factor; Provisional
Probab=82.06 E-value=3.9 Score=42.76 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=48.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.+..+++...+++.|.++||+.||++.+-+...+.++.++|-+++...
T Consensus 111 ~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~~~~~ 162 (182)
T PRK12511 111 DLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAALRAFEEGT 162 (182)
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999998888744
No 334
>PRK12544 RNA polymerase sigma factor; Provisional
Probab=82.06 E-value=4 Score=43.63 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=47.4
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.|..+++..-+++.|..+||+.+|++.+-|...+.++.++|-+++.
T Consensus 147 ~~L~~~~r~v~~L~~~~g~s~~EIAe~lgis~~tV~~~l~RAr~~Lr~~l~ 197 (206)
T PRK12544 147 DGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYRARLRLRECLE 197 (206)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999999988875
No 335
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=81.56 E-value=3.5 Score=41.56 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=44.2
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 908 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~ 908 (1033)
..|++.|..++...-+++.|..+||+.||++.+-+...+.++.++|-+.
T Consensus 121 ~~L~~~~r~vl~l~~~~g~s~~eIA~~l~is~~tv~~~l~ra~~~Lr~~ 169 (170)
T TIGR02952 121 KILTPKQQHVIALRFGQNLPIAEVARILGKTEGAVKILQFRAIKKLARQ 169 (170)
T ss_pred HhCCHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999999999999988887653
No 336
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=81.53 E-value=3.3 Score=52.46 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeEEEecCChhhH
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG-YSNIFVTAPSPENL 318 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI~VTAPs~env 318 (1033)
..-.-|..|+...+++++.++.| +.|.=+.|.||+-+.=-.+=.++..| ..||+-=|=...=+
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~r--aLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv 228 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNR--ALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALV 228 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCce--EEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHH
Confidence 33456999999999999988755 45556689999965422234566666 56776555544433
No 337
>PRK05803 sporulation sigma factor SigK; Reviewed
Probab=81.44 E-value=3.7 Score=44.53 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=46.2
Q ss_pred CccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~g----LQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.++.++...- .+++|..+||+++|++.+.+...++++++++-+++...
T Consensus 175 ~Lp~~~R~i~~l~y~~~~~e~~S~~EIA~~lgis~~tV~~~~~rA~~kLr~~l~~~ 230 (233)
T PRK05803 175 ILDEREKEVIEMRYGLGNGKEKTQREIAKALGISRSYVSRIEKRALKKLFKELYRA 230 (233)
T ss_pred hCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899888888876 69999999999999999999999999999999887643
No 338
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.38 E-value=10 Score=47.81 Aligned_cols=64 Identities=25% Similarity=0.307 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~ 325 (1033)
+-||.+|+.++++.+..+. +..+|+|-.|.||+.++ |.+++.--..++|-+|+..-+..|++=+
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~----a~~~~~~~~p~Lvi~~n~~~A~ql~~el 74 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTM----ANVIAQVNRPTLVIAHNKTLAAQLYNEF 74 (655)
T ss_pred ChHHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHH----HHHHHHhCCCEEEEECCHHHHHHHHHHH
Confidence 3499999999999886653 23469999999999886 4444432246899999999998887544
No 339
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=81.34 E-value=3.1 Score=43.35 Aligned_cols=51 Identities=16% Similarity=0.041 Sum_probs=46.2
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.|..+++..-+++.|..|||+.+|++.+.+-..+..+.++|-+.++
T Consensus 129 ~~Lp~~~r~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~ 179 (185)
T PRK09649 129 ADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAE 179 (185)
T ss_pred HhCCHHHhHHhhhHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 358999999999999999999999999999999999999999998887543
No 340
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated
Probab=81.34 E-value=3.7 Score=44.49 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=46.9
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.|..+++...++++|..+||+++|++.+-|-..+++++++|-+.+.
T Consensus 183 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 233 (236)
T PRK06986 183 ESLPEREQLVLSLYYQEELNLKEIGAVLGVSESRVSQIHSQAIKRLRARLG 233 (236)
T ss_pred HhCCHHHHHHHHhHhccCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999999999999999999999988764
No 341
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=81.22 E-value=6.2 Score=49.40 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCCeEEEecCChhhHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENLKTLFEF 324 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~-~g~~nI~VTAPs~env~tlFef 324 (1033)
+|.+....+.+++.++ +.+++.|+-|.|||.|--+++...+. ....+|+|++|+.+=...+++-
T Consensus 1 ~Q~~~~~~i~~al~~~---~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~ 65 (636)
T TIGR03117 1 EQALFYLNCLTSLRQK---RIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSE 65 (636)
T ss_pred CHHHHHHHHHHHHhcC---CeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHH
Confidence 4888777778877663 58999999999999777666544433 2246899999999999888873
No 342
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.02 E-value=4.5 Score=50.17 Aligned_cols=246 Identities=19% Similarity=0.284 Sum_probs=129.4
Q ss_pred HHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCC----eEEEecCChhhHHHHHHHHHhhccc-cccccccc
Q 001672 265 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS----NIFVTAPSPENLKTLFEFVCKGFNA-IEYKEHID 339 (1033)
Q Consensus 265 ~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~----nI~VTAPs~env~tlFef~~kgl~a-Lgy~e~~d 339 (1033)
.++.+|.+ ..+++|+|..|.||++-|=--+ ...||. .|-+|-|..-++-++-.-+..-+.. ||- .+.
T Consensus 272 ell~av~e---~QVLiI~GeTGSGKTTQiPQyL---~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~--eVG 343 (902)
T KOG0923|consen 272 ELLKAVKE---HQVLIIVGETGSGKTTQIPQYL---YEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH--EVG 343 (902)
T ss_pred HHHHHHHh---CcEEEEEcCCCCCccccccHHH---HhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccc--ccc
Confidence 35566655 4599999999999999885433 333443 4999999999988887777655432 221 123
Q ss_pred ccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc-------cCCccEEEEecccC--CCHHHHHHhhc------CC
Q 001672 340 YDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-------LAQVELLVIDEAAA--IPLPVVRSLLG------PY 404 (1033)
Q Consensus 340 y~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~-------l~~adLLvIDEAAA--IPlplL~~Ll~------~y 404 (1033)
|.|-.. .| ...+-.|.|+.---+++ +....++|||||=- +...+|-.|+. |-
T Consensus 344 YsIRFE------dc-------TSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rpd 410 (902)
T KOG0923|consen 344 YSIRFE------DC-------TSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPD 410 (902)
T ss_pred eEEEec------cc-------cCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCc
Confidence 333110 01 12344578887765542 34567899999963 44455555542 33
Q ss_pred --eEEEEecccCCCCCCcchhHHHHHHhhhcC----CCCCCCcCCCccCccee-EEEeccccccCCCCcHHHHHHHhccC
Q 001672 405 --LVFLSSTVNGYEGTGRSLSLKLLHQLEQQS----HMPAKGVEGSAHGCLFK-KIELSESIRYAPGDPIESWLNGLLCL 477 (1033)
Q Consensus 405 --~V~lsSTI~GYEGTGRgfsLKf~~~L~~~~----~~~~~~~~~~~~~~~~~-ei~L~ePIRya~gDPlE~WL~~lL~L 477 (1033)
+++.|-|.. +=||-..+..-. |+ |.+. .+.-++ =..-|-+++-+-.+|=.
T Consensus 411 LKllIsSAT~D---------AekFS~fFDdapIF~iPG-----------RRyPVdi~Yt~---~PEAdYldAai~tVlqI 467 (902)
T KOG0923|consen 411 LKLLISSATMD---------AEKFSAFFDDAPIFRIPG-----------RRYPVDIFYTK---APEADYLDAAIVTVLQI 467 (902)
T ss_pred ceEEeeccccC---------HHHHHHhccCCcEEeccC-----------cccceeeeccc---CCchhHHHHHHhhheee
Confidence 356666654 346666664321 11 1100 000000 01122233322222221
Q ss_pred CCCCCCCCCCCCCCCCccceeeeCcccccccCcCcHHHHHHHHH--------HHHhcccCCChhHHHHhhcCC---CCeE
Q 001672 478 DVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMA--------LYVSSHYKNSPNDLQLMADAP---AHHL 546 (1033)
Q Consensus 478 Da~~~~~~~~~~p~p~~c~l~~Vnrd~Lfs~h~~sE~fLqq~~~--------LlV~AHYknsPnDLqlLlDaP---~h~l 546 (1033)
-.+. ++.+--.+..-+|+.- ..+.-|++.+. |.|.--|=|=|.|||..-=.| +.+=
T Consensus 468 H~tq---------p~GDILVFltGQeEIE----t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRK 534 (902)
T KOG0923|consen 468 HLTQ---------PLGDILVFLTGQEEIE----TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARK 534 (902)
T ss_pred Eecc---------CCccEEEEeccHHHHH----HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCcee
Confidence 1111 1122223334444432 23344444333 457788999999999876544 3345
Q ss_pred EEEecCCcccCCCCCCeEEEE
Q 001672 547 FVLLGPVDESKNQLPDILCVI 567 (1033)
Q Consensus 547 fvL~~p~~~~~~~lp~il~vi 567 (1033)
.||...+.++.-+++.|.=|+
T Consensus 535 VVLATNIAETSlTIdgI~yVi 555 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVI 555 (902)
T ss_pred EEEeecchhhceeecCeEEEe
Confidence 566655555555555554443
No 343
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=80.99 E-value=0.72 Score=43.56 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=39.8
Q ss_pred CCCCCchhHHHHhhhcCCCCCCCcceEEEEEeeCcccccCChHHHHHHHHHHHHhccc
Q 001672 589 QPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQL 646 (1033)
Q Consensus 589 Rp~GdLIP~~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~ 646 (1033)
-|.|++|-|+|..|++.---+ .|-|+|||+||.+.++-.+.++...+.
T Consensus 5 gpeG~PVSW~lmdqtge~rmg----------yTlPeyR~~G~~~~v~~~~~~~L~~~g 52 (89)
T PF08444_consen 5 GPEGNPVSWSLMDQTGEMRMG----------YTLPEYRGQGLMSQVMYHLAQYLHKLG 52 (89)
T ss_pred CCCCCEeEEEEeccccccccc----------ccCHhHhcCCHHHHHHHHHHHHHHHCC
Confidence 478999999999887554322 689999999999999999999887554
No 344
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=80.88 E-value=2.4 Score=43.56 Aligned_cols=127 Identities=18% Similarity=0.272 Sum_probs=67.1
Q ss_pred cEEEEEeCCCCCHHH-HHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCCCCCcceE
Q 001672 277 STVALLAARGRGKSA-ALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIV 355 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSA-aLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ 355 (1033)
..-+|+-..|.|||. .|=-.+..++..+ .+++|-+|+.--+..+-+.+ +.+...-+..+ +. +..+...++
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~-~rvLvL~PTRvva~em~~aL----~~~~~~~~t~~--~~--~~~~g~~~i 75 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRR-LRVLVLAPTRVVAEEMYEAL----KGLPVRFHTNA--RM--RTHFGSSII 75 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT---EEEEESSHHHHHHHHHHT----TTSSEEEESTT--SS------SSSSE
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHcc-CeEEEecccHHHHHHHHHHH----hcCCcccCcee--ee--ccccCCCcc
Confidence 355899999999999 5766666777776 58999999998887776554 33322222111 11 122455666
Q ss_pred EEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHH------HHHHhh--cCC-eEEEEecccCCCC
Q 001672 356 RINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLP------VVRSLL--GPY-LVFLSSTVNGYEG 417 (1033)
Q Consensus 356 ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlp------lL~~Ll--~~y-~V~lsSTI~GYEG 417 (1033)
-|.-+..- -+|+.. -.....+|++|+||+=-.... .++.+- |.. .|+|+-|=.|-|.
T Consensus 76 ~vMc~at~---~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 76 DVMCHATY---GHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSED 141 (148)
T ss_dssp EEEEHHHH---HHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT---
T ss_pred cccccHHH---HHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCCC
Confidence 65433221 122322 223457999999998544332 233333 222 5788889888764
No 345
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=80.88 E-value=3.1 Score=52.62 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=45.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccc
Q 001672 280 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE 336 (1033)
Q Consensus 280 vLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e 336 (1033)
+.-+..|-|||.+..++++.....|. .+.|.+|+.+=++..++...+-++.||..-
T Consensus 73 Iaem~TGeGKTLva~lpa~l~aL~G~-~V~VvTpt~~LA~qdae~~~~l~~~LGLsv 128 (745)
T TIGR00963 73 IAEMKTGEGKTLTATLPAYLNALTGK-GVHVVTVNDYLAQRDAEWMGQVYRFLGLSV 128 (745)
T ss_pred eeeecCCCccHHHHHHHHHHHHHhCC-CEEEEcCCHHHHHHHHHHHHHHhccCCCeE
Confidence 78899999999999888764444565 699999999999999998888777777543
No 346
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=80.83 E-value=6.2 Score=41.92 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC------CCeEEEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAG------YSNIFVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g------~~nI~VTAPs~ 315 (1033)
...+.|+|+.|.|||+.+-..++.++..+ ..-++|++-+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 45889999999999997766555554444 45588888663
No 347
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=80.79 E-value=3.6 Score=42.24 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=45.6
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.|..+++..-+++.|.+|||+.+|++.+.+...+.++++++..+.
T Consensus 119 ~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~~~~~~ 167 (172)
T PRK09651 119 GLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVKKYVAKATEHCLLFR 167 (172)
T ss_pred hCCHHHhHHhhhhhccCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999988764
No 348
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=80.75 E-value=8.3 Score=49.33 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=21.2
Q ss_pred HHHHHHHHhcccCCcEEEEEeCCCCCHHHHHH
Q 001672 263 VITFLDAILDKTLRSTVALLAARGRGKSAALG 294 (1033)
Q Consensus 263 v~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLG 294 (1033)
+..+++.+..+ .+..++|+|+.|.|||+..=
T Consensus 195 i~~~i~iL~r~-~~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 195 LERAIQVLCRR-RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred HHHHHHHHhcc-CCCCeEEECCCCCCHHHHHH
Confidence 44455544443 34567899999999999753
No 349
>PRK12538 RNA polymerase sigma factor; Provisional
Probab=80.65 E-value=4 Score=44.57 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=47.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.|..+++..-+++.|..+||++||++.+-|-..+.++.++|-+++..
T Consensus 171 ~Lp~~~R~v~~L~~~eg~s~~EIA~~Lgis~~tVk~~l~RAr~kLr~~l~~ 221 (233)
T PRK12538 171 RLPEQQRIAVILSYHENMSNGEIAEVMDTTVAAVESLLKRGRQQLRDLLRR 221 (233)
T ss_pred hCCHHHHHHhhhHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999888764
No 350
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=80.58 E-value=1.5 Score=45.79 Aligned_cols=50 Identities=24% Similarity=0.354 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHH
Q 001672 275 LRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEF 324 (1033)
Q Consensus 275 ~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef 324 (1033)
..+.++|+|+||.|||+++=-.+...-..++.-+++......+...+..+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 35689999999999999887655554333344455655555554444444
No 351
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=80.55 E-value=5.7 Score=32.46 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001672 862 LSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 905 (1033)
Q Consensus 862 Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl 905 (1033)
|++.|..++.. ..++.+..+||+.++++.+.+...++++.+++
T Consensus 1 l~~~e~~i~~~-~~~~~s~~eia~~l~~s~~tv~~~~~~~~~~l 43 (57)
T cd06170 1 LTPREREVLRL-LAEGKTNKEIADILGISEKTVKTHLRNIMRKL 43 (57)
T ss_pred CCHHHHHHHHH-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 45666665544 67999999999999999988887777665544
No 352
>PRK06851 hypothetical protein; Provisional
Probab=80.29 E-value=2.3 Score=49.84 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=43.5
Q ss_pred HHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCC-eEEEecCChhhHHHH
Q 001672 265 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS-NIFVTAPSPENLKTL 321 (1033)
Q Consensus 265 ~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~-nI~VTAPs~env~tl 321 (1033)
.+.+.+.++ .++.++|||+.|.|||+++--.+..+...||. ..++|+++|.++.-|
T Consensus 20 s~~~~~~~~-~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgv 76 (367)
T PRK06851 20 SLYDSIIDG-ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGV 76 (367)
T ss_pred hhhhhhccc-cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeE
Confidence 344444443 46789999999999999999877777778875 578999999887543
No 353
>PRK12541 RNA polymerase sigma factor; Provisional
Probab=80.24 E-value=4.2 Score=41.00 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=42.9
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTD 907 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~ 907 (1033)
.|++.|..+++...+++.|.++||+.+|++.+.+...+.++.++|-+
T Consensus 112 ~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~Rar~~L~~ 158 (161)
T PRK12541 112 SLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETKS 158 (161)
T ss_pred HCCHHHHHHhhhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999998888887753
No 354
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=80.22 E-value=4 Score=51.46 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=74.6
Q ss_pred HHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCC--------eEEEecCChhhHHHHHHHHHhhcccccccc
Q 001672 265 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS--------NIFVTAPSPENLKTLFEFVCKGFNAIEYKE 336 (1033)
Q Consensus 265 ~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~--------nI~VTAPs~env~tlFef~~kgl~aLgy~e 336 (1033)
.++++|.+ +-+|+|+|..|.||++-+=-.+-.| ||. =|-||-|..-++-..-+-+.-.|..+| .
T Consensus 263 ~IMEaIn~---n~vvIIcGeTGsGKTTQvPQFLYEA---Gf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~--~ 334 (1172)
T KOG0926|consen 263 RIMEAINE---NPVVIICGETGSGKTTQVPQFLYEA---GFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLG--S 334 (1172)
T ss_pred HHHHHhhc---CCeEEEecCCCCCccccchHHHHHc---ccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCc--c
Confidence 35667755 4589999999999999987665443 331 389999998887777666655554433 2
Q ss_pred cccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc-------cCCccEEEEeccc--CCCHHHHHHhh
Q 001672 337 HIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-------LAQVELLVIDEAA--AIPLPVVRSLL 401 (1033)
Q Consensus 337 ~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~-------l~~adLLvIDEAA--AIPlplL~~Ll 401 (1033)
.+.|.|-. ....+..-.|.|+.---+.+ +..+..+|||||= .+-..+|-.||
T Consensus 335 eVsYqIRf-------------d~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmL 395 (1172)
T KOG0926|consen 335 EVSYQIRF-------------DGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGML 395 (1172)
T ss_pred ceeEEEEe-------------ccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHH
Confidence 23444422 22234445688887664432 3457899999995 44555555554
No 355
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.76 E-value=5.4 Score=48.40 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-HcCCCeEEEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNIFVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i-~~g~~nI~VTAPs~ 315 (1033)
..++.|.|..|-|||++++..++.+. ..|..+|.+.+-++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 35899999999999999999888775 45655664333343
No 356
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.74 E-value=8.5 Score=42.43 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=18.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Q 001672 277 STVALLAARGRGKSAALGLAIAGA 300 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~ 300 (1033)
..++|+|++|.|||++.-+.+-.+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999775544333
No 357
>PRK07670 RNA polymerase sigma factor SigD; Validated
Probab=79.66 E-value=4.7 Score=44.24 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.+..++....++++|..+||+.+|++.+.|-..+++++++|-.++.
T Consensus 200 ~~L~~~~r~vl~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 250 (251)
T PRK07670 200 KQLSEKEQLVISLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLKKLLE 250 (251)
T ss_pred hcCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 358899999999999999999999999999999999999999999877653
No 358
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=79.62 E-value=16 Score=43.09 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.7
Q ss_pred CcEEEEEeCCCCCHHHH
Q 001672 276 RSTVALLAARGRGKSAA 292 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAa 292 (1033)
.+.++|+|+.|.|||++
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 45689999999999974
No 359
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=79.57 E-value=4.4 Score=38.73 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001672 863 SYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 905 (1033)
Q Consensus 863 s~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl 905 (1033)
.+.+..||..+-+++++|++|+.+|+++.+.+..+-++|++.|
T Consensus 57 d~~~r~iL~~~Yi~~~~~~~I~~~l~~S~~t~yr~~~~Al~~L 99 (100)
T PF07374_consen 57 DPDERLILRMRYINKLTWEQIAEELNISRRTYYRIHKKALKEL 99 (100)
T ss_pred ChhHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 3467789999999999999999999999999999999998765
No 360
>PRK12535 RNA polymerase sigma factor; Provisional
Probab=79.46 E-value=4.8 Score=42.58 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=48.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.+..+++...+++.|.++||+.+|++.+-|...+.++.++|-+++...
T Consensus 133 ~Lp~~~r~v~~l~~~~g~s~~EIAe~lgis~~tV~~~l~Rar~~Lr~~l~~~ 184 (196)
T PRK12535 133 ALPPERREALILTQVLGYTYEEAAKIADVRVGTIRSRVARARADLIAATATG 184 (196)
T ss_pred cCCHHHHHHhhhHHHhCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 5889999999999999999999999999999999999999999999888654
No 361
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=79.41 E-value=7.1 Score=44.63 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----C--CCeEEEecCChhhHHHHHHHHHhhc
Q 001672 257 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA----G--YSNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 257 ~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~----g--~~nI~VTAPs~env~tlFef~~kgl 329 (1033)
.+|.+.|..++.....+.....++|+|++|.|||+++=..+..+... + ..-|+|.+........++.-+...+
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 99 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQL 99 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666677776655444444579999999999999886555544321 1 2345666655444445555444443
No 362
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.08 E-value=7.8 Score=46.29 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCCeE-EEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIA-AGYSNI-FVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~-~g~~nI-~VTAPs~ 315 (1033)
...+.|.|..|-||||++...++..+. .|..++ +||+.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ 232 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSY 232 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 457999999999999999987775543 344444 6666663
No 363
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=78.97 E-value=5.5 Score=33.88 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=35.3
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKL 905 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl 905 (1033)
.||+.|.. ++....++++..+||+++|++.+-+....+.+++|+
T Consensus 3 ~LT~~E~~-vl~~l~~G~~~~eIA~~l~is~~tV~~~~~~i~~Kl 46 (58)
T PF00196_consen 3 SLTERELE-VLRLLAQGMSNKEIAEELGISEKTVKSHRRRIMKKL 46 (58)
T ss_dssp SS-HHHHH-HHHHHHTTS-HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHH-HHHHHHhcCCcchhHHhcCcchhhHHHHHHHHHHHh
Confidence 47777776 556689999999999999999998888888888775
No 364
>PRK12518 RNA polymerase sigma factor; Provisional
Probab=78.85 E-value=2.7 Score=42.89 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+|+...+++.|.++||+.+|++.+.+-..+.++.+++-+++.+
T Consensus 120 ~L~~~~r~vl~l~~~~g~s~~eIA~~lg~s~~tv~~~l~Rar~~L~~~l~~ 170 (175)
T PRK12518 120 TLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSRLFYARRQLRKFLQQ 170 (175)
T ss_pred hCCHHHeeeeeehHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999888754
No 365
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=78.78 E-value=0.5 Score=50.64 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=17.4
Q ss_pred CcEEEEEeCCCCCHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGl 295 (1033)
.+.++|||+.|.|||+.|=.
T Consensus 29 ~~~~~l~G~n~~GKstll~~ 48 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQ 48 (204)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 36899999999999998764
No 366
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=78.74 E-value=9.3 Score=43.15 Aligned_cols=68 Identities=10% Similarity=-0.042 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHH-HHHHHcCCC----eEEEecCChhhHHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI-AGAIAAGYS----NIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlai-A~~i~~g~~----nI~VTAPs~env~tlFef~~ 326 (1033)
...|.+-..++.+++.++ ..+++-|+.|.|||.++=+++ +.+...+.. +|++++++..-...+++-+.
T Consensus 10 r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 10 YPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 467888777777777664 478999999999997665554 444444543 78888887776555544443
No 367
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=78.74 E-value=9.3 Score=43.15 Aligned_cols=68 Identities=10% Similarity=-0.042 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHH-HHHHHcCCC----eEEEecCChhhHHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAI-AGAIAAGYS----NIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlai-A~~i~~g~~----nI~VTAPs~env~tlFef~~ 326 (1033)
...|.+-..++.+++.++ ..+++-|+.|.|||.++=+++ +.+...+.. +|++++++..-...+++-+.
T Consensus 10 r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 10 YPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 467888777777777664 478999999999997665554 444444543 78888887776555544443
No 368
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.67 E-value=13 Score=46.54 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHH
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIA 298 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA 298 (1033)
|..++..|..++..++....++++|++|.|||++.-+.+.
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6666666777777766566788999999999997654433
No 369
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=78.58 E-value=17 Score=37.82 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=29.7
Q ss_pred cCCccEEEEecccC------CCHHHHHHhhc--CC--eEEEEecccCCCCCCcchhHHHHHHh
Q 001672 378 LAQVELLVIDEAAA------IPLPVVRSLLG--PY--LVFLSSTVNGYEGTGRSLSLKLLHQL 430 (1033)
Q Consensus 378 l~~adLLvIDEAAA------IPlplL~~Ll~--~y--~V~lsSTI~GYEGTGRgfsLKf~~~L 430 (1033)
.+++||||+||.-. ||...|..++. |. -||+ |||...=.++..-
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIl---------TGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVL---------TGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEE---------ECCCCCHHHHHhC
Confidence 35799999999743 57777788883 32 2443 7898865555543
No 370
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=78.55 E-value=5 Score=45.13 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CCeEEEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA-G-YSNIFVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g-~~nI~VTAPs~ 315 (1033)
.+.++++|+.|.|||+++.-.++.+... | +.=.+||+-+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 3578999999999999998766666554 5 44346776553
No 371
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=78.55 E-value=3.1 Score=38.03 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=28.2
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHhcc
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQ 645 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~ 645 (1033)
-+-|...-|.|+++|+|+|+.|++.+.+|.+.+
T Consensus 22 ~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~ 54 (78)
T PF14542_consen 22 VIVITHTEVPPELRGQGIAKKLVEAALDYAREN 54 (78)
T ss_dssp EEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECccccCCcHHHHHHHHHHHHHHHC
Confidence 467889999999999999999999999987643
No 372
>PRK12513 RNA polymerase sigma factor; Provisional
Probab=78.50 E-value=3.1 Score=43.39 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=45.8
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.++.++....+++.|..+||+++|++..-|-..+.++.++|-+.+.
T Consensus 139 ~L~~~~r~i~~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 188 (194)
T PRK12513 139 TLPDEQREVFLLREHGDLELEEIAELTGVPEETVKSRLRYALQKLRELLA 188 (194)
T ss_pred hCCHhHhhheeeehccCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999998888775
No 373
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=78.40 E-value=14 Score=47.11 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=20.5
Q ss_pred CHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Q 001672 879 DISCIQEQM-KLEADRIFVLFRKVMTKLT 906 (1033)
Q Consensus 879 s~~~v~~el-~l~~~Q~~a~~~k~v~kl~ 906 (1033)
+++++|+.. |+++.++.++.++|...-.
T Consensus 645 ~l~~la~~t~g~sgadi~~~~~~A~~~a~ 673 (733)
T TIGR01243 645 DLEELAEMTEGYTGADIEAVCREAAMAAL 673 (733)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 466777766 6889999988887775443
No 374
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=78.32 E-value=3.4 Score=53.40 Aligned_cols=71 Identities=8% Similarity=-0.019 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccc
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEY 334 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy 334 (1033)
|.=|.+++-.++ .+ +-++..|..|.|||.|-.|.+...+..|. .+.|-+|+.+=+....+.+..-...+|.
T Consensus 94 tp~qvQ~I~~i~----l~---~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-~v~IVTpTrELA~Qdae~m~~L~k~lGL 164 (970)
T PRK12899 94 VPYDVQILGAIA----MH---KGFITEMQTGEGKTLTAVMPLYLNALTGK-PVHLVTVNDYLAQRDCEWVGSVLRWLGL 164 (970)
T ss_pred ChHHHHHhhhhh----cC---CCeEEEeCCCCChHHHHHHHHHHHHhhcC-CeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 555666554332 22 24789999999999999998776554553 3667788999888888877665554543
No 375
>TIGR02846 spore_sigmaK RNA polymerase sigma-K factor. The sporulation-specific transcription factor sigma-K (also called sigma-27) is expressed in the mother cell compartment of endospore-forming bacteria such as Bacillus subtilis. Like its close homolog sigma-E (sigma-29) (see TIGR02835), also specific to the mother cell compartment, it must be activated by a proteolytic cleavage. Note that in Bacillus subtilis (and apparently also Clostridium tetani), but not in other endospore forming species such as Bacillus anthracis, the sigK gene is generated by a non-germline (mother cell only) chromosomal rearrangement that recombines coding regions for the N-terminal and C-terminal regions of sigma-K.
Probab=78.17 E-value=4.9 Score=43.40 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=44.7
Q ss_pred CCccHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGM----LGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gL----Q~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
..|++.|+.+++..-+ ++.|.++||+++|++.+.+...++.++++|-+.+
T Consensus 173 ~~L~~~~r~il~l~y~~~~~e~~S~~EIAe~lgis~~tV~~~~~rAl~~Lr~~~ 226 (227)
T TIGR02846 173 SVLDGREREVIEMRYGLGDGRRKTQREIAKILGISRSYVSRIEKRALMKLYKEL 226 (227)
T ss_pred HhCCHHHHHHHHHHHcCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 3588999999998876 8899999999999999999999999999987765
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.07 E-value=22 Score=40.87 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPS 314 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs 314 (1033)
...+.++|..|-|||+++.-.++.+...|++=.++++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 458899999999999999987776666665334555544
No 377
>TIGR02479 FliA_WhiG RNA polymerase sigma factor, FliA/WhiG family. Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium.
Probab=78.01 E-value=5.5 Score=42.80 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
..|++.|..++...-++++|..+||+.+|++.+.+...++++++++-+++
T Consensus 174 ~~L~~~~r~il~l~y~~~~s~~eIA~~lgis~~tV~~~~~ra~~~Lr~~l 223 (224)
T TIGR02479 174 ESLSEREQLVLSLYYYEELNLKEIGEVLGLTESRVSQIHSQALKKLRAKL 223 (224)
T ss_pred HhCCHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999999999999887654
No 378
>TIGR03001 Sig-70_gmx1 RNA polymerase sigma-70 factor, Myxococcales family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in multiple copies in the order Myxococcales. This model supercedes TIGR02233, which has now been retired.
Probab=77.95 E-value=6 Score=43.60 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=47.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
..|++.+..+++...+++.|..|||+.+|++.+-|...+.++.++|-+++..
T Consensus 160 ~~Lp~~~R~v~~L~~~eg~S~~EIA~~Lgis~~TVk~rl~RAr~~Lr~~l~~ 211 (244)
T TIGR03001 160 AALSERERHLLRLHFVDGLSMDRIGAMYQVHRSTVSRWVAQARERLLERTRR 211 (244)
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999888887753
No 379
>PRK09640 RNA polymerase sigma factor SigX; Reviewed
Probab=77.86 E-value=2.8 Score=43.63 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
.|++.|..+++-.-+++.|.++||+.||++.+-|...+.++.++|-+.+...
T Consensus 134 ~L~~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr~~l~~~ 185 (188)
T PRK09640 134 HVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYKRALDKLREKFAGL 185 (188)
T ss_pred hcChhheeeeeeHHhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899988999999999999999999999999999999988877654
No 380
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=77.72 E-value=31 Score=36.84 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=36.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh--hhHHHHHHHHH
Q 001672 277 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP--ENLKTLFEFVC 326 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~--env~tlFef~~ 326 (1033)
+++++.|+-|-|||+++.-.+|.+...|.+=-+||+=+. .++..|-.|+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~ 53 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAE 53 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHH
Confidence 478999999999999999888888877654446666433 56666665553
No 381
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=77.54 E-value=10 Score=40.59 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
.+.+.|+|..|.|||+..=-.++..+..|..=+||++-
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45889999999999987644444444567666899887
No 382
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=77.45 E-value=27 Score=36.28 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=26.5
Q ss_pred HHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 266 FLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 266 ~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
|.+.+..++....+++.|+.|.||+++.=..+..+.
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 455666776777899999999999987755444443
No 383
>PRK07408 RNA polymerase sigma factor SigF; Reviewed
Probab=77.38 E-value=6.1 Score=43.71 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=47.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.+..++....+++.|..+||+.+|++...|-..+.+++++|-+++.
T Consensus 202 ~~L~~~~r~vl~l~y~~~~s~~eIA~~lgvs~~~V~~~~~ra~~kLr~~l~ 252 (256)
T PRK07408 202 AQLEERTREVLEFVFLHDLTQKEAAERLGISPVTVSRRVKKGLDQLKKLLQ 252 (256)
T ss_pred HcCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 358899999999999999999999999999999999999999999987764
No 384
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=77.30 E-value=2 Score=55.12 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=45.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccc
Q 001672 280 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKE 336 (1033)
Q Consensus 280 vLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e 336 (1033)
+..+..|-|||.+..|.+......|. .+.|.+|+.+=+...++....-++.+|..-
T Consensus 99 Iaem~TGeGKTL~a~Lpa~~~al~G~-~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv 154 (896)
T PRK13104 99 IAEMRTGEGKTLVATLPAYLNAISGR-GVHIVTVNDYLAKRDSQWMKPIYEFLGLTV 154 (896)
T ss_pred cccccCCCCchHHHHHHHHHHHhcCC-CEEEEcCCHHHHHHHHHHHHHHhcccCceE
Confidence 56788999999999988886555674 588999999999988888877777776543
No 385
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=77.25 E-value=9.4 Score=47.63 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 001672 863 SYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVM 902 (1033)
Q Consensus 863 s~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v 902 (1033)
-..|.++.||+-+=+.|..+|++.||-.-+-|+..++|+=
T Consensus 555 ~aRqiAMYL~r~lt~~Sl~~IG~~FgRdHSTV~~A~~kI~ 594 (617)
T PRK14086 555 TARQIAMYLCRELTDLSLPKIGQQFGRDHTTVMHADRKIR 594 (617)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHhCCChhHHHHHHHHHH
Confidence 3568889999999999999999999944365655554443
No 386
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=77.20 E-value=16 Score=45.82 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHH
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG 299 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ 299 (1033)
|..++.++...+.... ..+++|+|+.|.|||+++-+....
T Consensus 159 qs~~~~~l~~~ia~~~-~~~vlL~Gp~GtGKTTLAr~i~~~ 198 (615)
T TIGR02903 159 QERAIKALLAKVASPF-PQHIILYGPPGVGKTTAARLALEE 198 (615)
T ss_pred CcHHHHHHHHHHhcCC-CCeEEEECCCCCCHHHHHHHHHHh
Confidence 5556666666665433 457999999999999988765433
No 387
>PRK08583 RNA polymerase sigma factor SigB; Validated
Probab=76.98 E-value=6.1 Score=43.40 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=46.0
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.|..+|....++++|..+||+.+|++...|...+++++++|-..+.
T Consensus 205 ~L~~~~r~vl~l~~~~g~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~l~ 254 (257)
T PRK08583 205 VLSDREKSIIQCTFIENLSQKETGERLGISQMHVSRLQRQAIKKLREAAF 254 (257)
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999877664
No 388
>PRK08295 RNA polymerase factor sigma-70; Validated
Probab=76.88 E-value=6.9 Score=41.05 Aligned_cols=50 Identities=26% Similarity=0.287 Sum_probs=45.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+++. -+|+.|..+||+.+|++.+.+-..+.++.++|-+++..
T Consensus 155 ~L~~~~r~vl~l-~~e~~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~ 204 (208)
T PRK08295 155 LLSELEKEVLEL-YLDGKSYQEIAEELNRHVKSIDNALQRVKRKLEKYLEN 204 (208)
T ss_pred hCCHHHHHHHHH-HHccCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888888 89999999999999999999999999999998887754
No 389
>PRK12517 RNA polymerase sigma factor; Provisional
Probab=76.83 E-value=7.2 Score=40.85 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=47.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.+..+++...+++.+..+||+++|++.+-+...+..+.++|-+++..
T Consensus 128 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~~ 178 (188)
T PRK12517 128 KLDPEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTRLFRARNQLKEALEK 178 (188)
T ss_pred hCCHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999888864
No 390
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=76.82 E-value=5 Score=46.33 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=33.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 317 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~en 317 (1033)
.+.+.|.|+.|.|||+..-.+++.+...|..-+||++...-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHH
Confidence 457889999999999877777777777777778999865433
No 391
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=76.78 E-value=6.1 Score=50.06 Aligned_cols=66 Identities=27% Similarity=0.254 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CC--CeEEEecCChhhHHHHHHHHHhhc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA-GY--SNIFVTAPSPENLKTLFEFVCKGF 329 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~-g~--~nI~VTAPs~env~tlFef~~kgl 329 (1033)
.+.+|.+||.. ...+++|.|+-|.|||.+|=--+|.++.. |. .+|++.+-+..+++.+-+-+.+-+
T Consensus 5 Ln~~Q~~av~~---------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 5 LNPEQREAVKT---------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cCHHHHHHHhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 57789887741 13489999999999999999999999975 43 579999999999988887776543
No 392
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=76.74 E-value=12 Score=47.60 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=19.0
Q ss_pred HHHhcccCCcEEEEEeCCCCCHHHHHHH
Q 001672 268 DAILDKTLRSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 268 ~~i~ek~~r~~vvLTA~RGRGKSAaLGl 295 (1033)
..+..++ -..++|+|++|.|||++.-.
T Consensus 45 ~~i~~~~-~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 45 RAIKADR-VGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred HHHhcCC-CceEEEECCCCCCHHHHHHH
Confidence 3344443 34689999999999986643
No 393
>PRK06811 RNA polymerase factor sigma-70; Validated
Probab=76.63 E-value=5.8 Score=41.36 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=44.1
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.+..++...-+++.|..|||+.+|++.+.+...+.++.++|-+.-
T Consensus 131 ~L~~~~r~i~~l~~~~g~s~~EIAe~lgis~~~V~~~l~Ra~~~Lr~~~ 179 (189)
T PRK06811 131 DLEKLDREIFIRRYLLGEKIEEIAKKLGLTRSAIDNRLSRGRKKLQKNK 179 (189)
T ss_pred hCCHHHHHHHHHHHHccCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 5889999999998999999999999999999999999999988876543
No 394
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=76.35 E-value=12 Score=41.01 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=44.0
Q ss_pred HHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH
Q 001672 263 VITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 263 v~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~ 325 (1033)
+.+|+.+++.|..-+.+|.+...|-+=|+.||||+|+-- .| .+.+.--|..+.....-+.+
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~-Tg-GR~vCIvp~~~~~~~~~~~l 89 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ-TG-GRHVCIVPDEQSLSEYKKAL 89 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh-cC-CeEEEEcCChhhHHHHHHHH
Confidence 457999999887666777776778888899999877643 33 46777778888766654443
No 395
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=76.14 E-value=3.4 Score=45.80 Aligned_cols=45 Identities=13% Similarity=0.457 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH
Q 001672 278 TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 278 ~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~ 325 (1033)
.+++.|+||.|||+.+=-.+. -....|.+|++-+|... .....|+
T Consensus 15 r~viIG~sGSGKT~li~~lL~-~~~~~f~~I~l~t~~~n--~~~~~~i 59 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY-YLRHKFDHIFLITPEYN--NEYYKYI 59 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH-hhcccCCEEEEEecCCc--hhhhhhc
Confidence 478999999999998743332 23456899999999544 4454444
No 396
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=75.98 E-value=7.7 Score=49.42 Aligned_cols=69 Identities=28% Similarity=0.178 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHhcccCCc-EEEEEeCCCCCHHHH-HHHHHHHHHHc--CCCeEEEecCChhhHHHHHHHHHh
Q 001672 255 STLDQGKAVITFLDAILDKTLRS-TVALLAARGRGKSAA-LGLAIAGAIAA--GYSNIFVTAPSPENLKTLFEFVCK 327 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~-~vvLTA~RGRGKSAa-LGlaiA~~i~~--g~~nI~VTAPs~env~tlFef~~k 327 (1033)
...-|.+++..+.. ...++ .++|.|+.|.|||.| +.+|.+.+... ..++||-+=|-...++.++.-+..
T Consensus 196 ~~~~~~~~~~~~~~----~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILR----LEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHh----cccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHh
Confidence 35568887765543 22345 899999999999965 34444443332 467899999999999888887765
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.91 E-value=17 Score=46.43 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=33.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-HcCCCeE-EEecCChh--hHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNI-FVTAPSPE--NLKTLFEF 324 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i-~~g~~nI-~VTAPs~e--nv~tlFef 324 (1033)
.+++.+.|..|-|||++++..++... ..|..+| +||+-+.. .+..+..|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~ 237 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIY 237 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHH
Confidence 35899999999999999999888764 4565566 55554333 34444433
No 398
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=75.74 E-value=29 Score=39.38 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHH
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAG 299 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ 299 (1033)
|.+++..+..++..++.....+++|+.|-||+++.-..+..
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~ 49 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALK 49 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHH
Confidence 77777788888888888888999999999999976544433
No 399
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=75.58 E-value=2.8 Score=44.77 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=47.8
Q ss_pred ceEEEEEeeCcccccCChHHHHHHHHHHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccc
Q 001672 613 GARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHL 692 (1033)
Q Consensus 613 g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l 692 (1033)
.+=+--+-+.|.|||.|+|..+|+.+..-+.....
T Consensus 120 vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~--------------------------------------------- 154 (202)
T KOG2488|consen 120 VLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHM--------------------------------------------- 154 (202)
T ss_pred EEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence 34445567889999999999999988764321110
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHCCCeEEEeeecccCCCCc
Q 001672 693 RERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGE 737 (1033)
Q Consensus 693 ~e~~~~~~dylGvSFG~T~~Ll~FW~k~gF~pvylrq~~n~~tGE 737 (1033)
. --+=+-|-.+...+.||+++||.+--..+ .+.+|+
T Consensus 155 -----~--kVmLTVf~~N~~al~Fy~~~gf~~~~~sp--~~~s~~ 190 (202)
T KOG2488|consen 155 -----R--KVMLTVFSENIRALGFYHRLGFVVDEESP--CDTSGE 190 (202)
T ss_pred -----h--hheeeeecccchhHHHHHHcCcccCCCCC--ccccch
Confidence 0 01234477788899999999999865443 344444
No 400
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=75.32 E-value=33 Score=40.28 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|.++...|..++..++....++++|+.|-||+++. .++|..+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~~A~~L 65 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLA-YRMARFL 65 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 478888888888998888888999999999999753 4555544
No 401
>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed
Probab=75.27 E-value=8.1 Score=42.77 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=47.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.++.++..+.++++|..+||+.||++...|-.+..+++++|-+.+..
T Consensus 205 ~L~~~er~vi~l~y~e~~t~~EIA~~lgis~~~V~~~~~ral~kLr~~l~~ 255 (257)
T PRK05911 205 ALEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSKALLKLRATLSA 255 (257)
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999999999999999999999999999999999888764
No 402
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=74.96 E-value=10 Score=32.69 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHhc-------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 001672 862 LSYVQAAVLLYIGML-------GQDISCIQEQMKLEADRIFVLFRKVMTKLT 906 (1033)
Q Consensus 862 Ls~~q~~iLla~gLQ-------~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~ 906 (1033)
||+.|..+|..-.-+ .-+.++||++||++..-+...+|++.+|++
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 455565555554443 357889999999999999999999999986
No 403
>PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed
Probab=74.82 E-value=7.5 Score=43.88 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=45.5
Q ss_pred CccHHHHHHHHHHHh--cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGM--LGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gL--Q~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.|+.||....+ +++|..+||++||++...|-.+.++++++|-..+.
T Consensus 227 ~L~~rer~vl~lr~~~~~~~t~~EIa~~lgvs~~~V~q~~~~Al~kLr~~l~ 278 (289)
T PRK07500 227 TLNERELRIIRERRLREDGATLEALGEELGISKERVRQIEARALEKLRRALL 278 (289)
T ss_pred cCCHHHHHHHHHHhcCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 588999988888766 99999999999999999999999999999988775
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=74.79 E-value=13 Score=47.37 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGl 295 (1033)
.|.+.+..+++.+..++ +.-++|.|+.|.|||+..=.
T Consensus 186 gr~~ei~~~~~~L~~~~-~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 186 GREDELERTIQVLCRRK-KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CcHHHHHHHHHHHhcCC-CCceEEECCCCCCHHHHHHH
Confidence 46666667776666554 44568999999999998743
No 405
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=74.67 E-value=41 Score=38.96 Aligned_cols=166 Identities=14% Similarity=0.200 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccc
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHI 338 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~ 338 (1033)
|+.+-..+..++..++....++++|++|-||+++. .++|.++.....+- ..|-- . +.....+.-..|-
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA-~~~A~~llC~~~~~--~~~Cg-~--------C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI-RALAQWLMCQTPQG--DQPCG-Q--------CHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH-HHHHHHHcCCCCCC--CCCCC-C--------CHHHHHHhcCCCC
Confidence 44445556777777777778999999999998754 44555543321000 00100 0 0111111123466
Q ss_pred cccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhh----cC--CeEEEEecc
Q 001672 339 DYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL----GP--YLVFLSSTV 412 (1033)
Q Consensus 339 dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll----~~--y~V~lsSTI 412 (1033)
||..+.... ++ .+.|.-.|.-...+. ..|. .+..-++|||+|-.+...--..|+ .| +.+|+=+|-
T Consensus 75 D~~~i~p~~---~~-~I~id~iR~l~~~~~-~~~~----~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 75 DFHILEPID---NK-DIGVDQVREINEKVS-QHAQ----QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CEEEEcccc---CC-CCCHHHHHHHHHHHh-hccc----cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 665553211 11 122322222111111 2222 134678999999999986555555 34 344443443
Q ss_pred cCCCCCCcchhHHHHHHhhhcCCCCCCCcCCCccCcceeEEEeccccccCCCCcHHHHHHHh
Q 001672 413 NGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGL 474 (1033)
Q Consensus 413 ~GYEGTGRgfsLKf~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~gDPlE~WL~~l 474 (1033)
+. -++++.++..+ +.+.+. -.+.+-++.||.+.
T Consensus 146 ~~---------~~llpTI~SRC----------------~~~~~~----~~~~~~~~~~L~~~ 178 (325)
T PRK06871 146 LS---------AALLPTIYSRC----------------QTWLIH----PPEEQQALDWLQAQ 178 (325)
T ss_pred Ch---------HhCchHHHhhc----------------eEEeCC----CCCHHHHHHHHHHH
Confidence 32 26777877654 234333 33446788899764
No 406
>TIGR02850 spore_sigG RNA polymerase sigma-G factor. Members of this family comprise the Firmicutes lineage endospore formation-specific sigma factor SigG. It is also desginated stage III sporulation protein G (SpoIIIG). This protein is rather closely related to sigma-F (SpoIIAC), another sporulation sigma factor.
Probab=74.54 E-value=6.5 Score=43.30 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=45.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 908 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~ 908 (1033)
..|++.+..++....++++|..+||+++|++...+..+.++++++|-++
T Consensus 205 ~~L~~rer~vi~~~~~~~~t~~eIA~~lgis~~~V~~~~~ral~kLr~~ 253 (254)
T TIGR02850 205 KRLNEREKMILNMRFFEGKTQMEVAEEIGISQAQVSRLEKAALKHMRKY 253 (254)
T ss_pred HcCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999999999999999999998654
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=74.22 E-value=13 Score=44.05 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=38.4
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-HcCCCeE-EEecCCh--hhHHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAI-AAGYSNI-FVTAPSP--ENLKTLFEFV 325 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i-~~g~~nI-~VTAPs~--env~tlFef~ 325 (1033)
++.++|.|+-|-||+++|--.+|... ..+..+| +||.=+. .++..|.-++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya 256 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYA 256 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHH
Confidence 67999999999999999988877766 4555666 7777664 4566666665
No 408
>PRK09638 RNA polymerase sigma factor SigY; Reviewed
Probab=74.10 E-value=4.5 Score=41.30 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=45.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.+..+++...+.+.|.++||+.+|++.+-+-..+.++..++-+.+.
T Consensus 126 ~L~~~~r~v~~l~~~~g~s~~eIA~~l~is~~~V~~~l~ra~~~l~~~l~ 175 (176)
T PRK09638 126 KLDPEFRAPVILKHYYGYTYEEIAKMLNIPEGTVKSRVHHGIKQLRKEWG 175 (176)
T ss_pred cCCHHHhheeeehhhcCCCHHHHHHHHCCChhHHHHHHHHHHHHHHHHhc
Confidence 47888999999988999999999999999999999999999999888763
No 409
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=73.92 E-value=5.2 Score=41.46 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEe-----cCChhhHHHHHHHHHhhcccccccc
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVT-----APSPENLKTLFEFVCKGFNAIEYKE 336 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VT-----APs~env~tlFef~~kgl~aLgy~e 336 (1033)
...+.|+|+.|.|||+.+-+. +++..-....|.+- .-++.....-..++...++.+|..+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i-~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~ 89 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTL-AGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAH 89 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHH-hCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHh
Confidence 358899999999999999875 44433222345542 1123333333344444555555543
No 410
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=73.89 E-value=6.8 Score=40.99 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=16.0
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q 001672 279 VALLAARGRGKSAALGLAI 297 (1033)
Q Consensus 279 vvLTA~RGRGKSAaLGlai 297 (1033)
++|||+.|.|||+.|-...
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999876544
No 411
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=73.85 E-value=5.9 Score=42.37 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=31.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc------CCCeEEEecCChhhHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAA------GYSNIFVTAPSPENLKTLFE 323 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~------g~~nI~VTAPs~env~tlFe 323 (1033)
.+.+.|+|+.|.|||+.+-..++..... +..-|+|++=..-..+.+.+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 4588999999999999887665543322 24558888755333344433
No 412
>PRK11922 RNA polymerase sigma factor; Provisional
Probab=73.50 E-value=5.5 Score=43.11 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=46.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
.|++.|..++....+++.|.++||+.||++.+.+-..++++..+|-+.+..
T Consensus 149 ~L~~~~r~i~~l~~~~g~s~~EIAe~lgis~~tVk~~l~Rar~kLr~~l~~ 199 (231)
T PRK11922 149 ALPDAFRAVFVLRVVEELSVEETAQALGLPEETVKTRLHRARRLLRESLAR 199 (231)
T ss_pred hCCHHHhhhheeehhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999988899999999999999999999999999999988888764
No 413
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=73.48 E-value=10 Score=40.31 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEec
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTA 312 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTA 312 (1033)
.+.+.|+|+.|.|||+..=..++.+...|..=++|++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 5588999999999998765555555566766678876
No 414
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=73.41 E-value=10 Score=44.51 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=26.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
.+.+.|+|+.|-|||+.+=..++.+...|..=++|+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45889999999999997765555554455434577764
No 415
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=73.28 E-value=15 Score=46.84 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=41.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 279 VALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 279 vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
.+..+..|-|||.+--+++..-...|. .+.|.+|+.+=++...+.+..-.+.+|..
T Consensus 86 ~Iaem~TGeGKTLta~Lpa~l~aL~g~-~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 86 NIAEMKTGEGKTLTATMPLYLNALTGK-GAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred ceeEecCCcchHHHHHHHHHHHhhcCC-ceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 489999999999998887544334453 69999999988877777765555555654
No 416
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=73.24 E-value=7.9 Score=44.26 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=39.8
Q ss_pred HHHHHHhcccCCc-EEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhH
Q 001672 265 TFLDAILDKTLRS-TVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENL 318 (1033)
Q Consensus 265 ~~~~~i~ek~~r~-~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env 318 (1033)
.++..+...+.+. .+=|||-.|-|||++++-.+..+...|. +|-|-|=+|.+-
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~-rVaVlAVDPSSp 92 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH-RVAVLAVDPSSP 92 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc-EEEEEEECCCCC
Confidence 3555666555454 6889999999999999999999988885 666666555544
No 417
>PRK08215 sporulation sigma factor SigG; Reviewed
Probab=73.13 E-value=8.4 Score=42.48 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
..|++.+..++....++++|..+||+.+|++.+.|-.+.++++++|-+++
T Consensus 208 ~~L~~~er~vi~~~~~~~~t~~eIA~~lgis~~~V~~~~~~al~kLr~~l 257 (258)
T PRK08215 208 KKLNDREKLILNLRFFQGKTQMEVAEEIGISQAQVSRLEKAALKHMRKYI 257 (258)
T ss_pred HcCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999999999987765
No 418
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=72.78 E-value=38 Score=38.95 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGl 295 (1033)
.|..++..+...+..++....++++|++|-||+++.=.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~ 47 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALW 47 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 37777888888888888888899999999999986643
No 419
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=72.43 E-value=3.7 Score=46.12 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.3
Q ss_pred EEEeeCcccccCChHHHHHHHHHHHHh
Q 001672 617 VRIATHPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 617 VRIAvhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
+-|+|||+|||+|+++.+...++.++-
T Consensus 192 I~I~T~~~yR~kGLA~~~aa~~I~~Cl 218 (265)
T PF12746_consen 192 IDIETHPEYRGKGLATAVAAAFILECL 218 (265)
T ss_dssp EEEEE-CCCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECHHhhcCCHHHHHHHHHHHHHH
Confidence 569999999999999999999888764
No 420
>CHL00176 ftsH cell division protein; Validated
Probab=72.38 E-value=26 Score=44.15 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.0
Q ss_pred CcEEEEEeCCCCCHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALG 294 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLG 294 (1033)
.+.++|.|+.|.|||.+.=
T Consensus 216 p~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998654
No 421
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=72.34 E-value=7.1 Score=49.41 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccccc--------------ccccccccCCCCC
Q 001672 285 RGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEH--------------IDYDIVRSSNPDL 350 (1033)
Q Consensus 285 RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~--------------~dy~i~~s~~p~~ 350 (1033)
.|-|||-+.-++++.....|. .+-|.+|+..=++.=++....-++.||..-. -.-+|++.||.+|
T Consensus 100 TGEGKTLvA~l~a~l~AL~G~-~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~ 178 (764)
T PRK12326 100 TGEGKTLAGAIAAAGYALQGR-RVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYACDVTYASVNEI 178 (764)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCccc
Confidence 399999999888887766775 5767788876666666665555555544321 2346777777665
Q ss_pred CcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhh--cCCeEEEEecccCCCCCCcchhHHHHH
Q 001672 351 RKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL--GPYLVFLSSTVNGYEGTGRSLSLKLLH 428 (1033)
Q Consensus 351 ~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll--~~y~V~lsSTI~GYEGTGRgfsLKf~~ 428 (1033)
.=-.-|=|. . ..+++. .....+..|||||=+| |+ .....++|+...|= .=-.-.-+|.+
T Consensus 179 gFDyLRDnm--------~-~~~~~~-v~R~~~faIVDEvDSi-------LIDeArtPLiISg~~~~~--~~y~~~~~~v~ 239 (764)
T PRK12326 179 GFDVLRDQL--------V-TDVADL-VSPNPDVAIIDEADSV-------LVDEALVPLVLAGSTPGE--APRGEIAELVR 239 (764)
T ss_pred ccccchhhh--------c-cChHhh-cCCccceeeecchhhh-------eeccccCceeeeCCCcch--hHHHHHHHHHH
Confidence 321111110 0 012211 1223567788887554 22 23345667776552 11112345566
Q ss_pred Hhhh
Q 001672 429 QLEQ 432 (1033)
Q Consensus 429 ~L~~ 432 (1033)
+|.+
T Consensus 240 ~L~~ 243 (764)
T PRK12326 240 RLRE 243 (764)
T ss_pred hcCc
Confidence 6643
No 422
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=72.20 E-value=9.1 Score=45.82 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHH
Q 001672 863 SYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKV 901 (1033)
Q Consensus 863 s~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~ 901 (1033)
.+.|.++.+++=+=+.|..+|++.||..-+-|+...+++
T Consensus 373 ~aR~iamyl~r~~~~~s~~~Ig~~fgr~hstV~~a~~~i 411 (440)
T PRK14088 373 LARRIGMYVAKNYLGSSLRTIAEKFNRSHPVVVDSVKKV 411 (440)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 355777888888888889999999985556665544443
No 423
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.18 E-value=24 Score=43.63 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CCeE-EEecCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAG-YSNI-FVTAPS 314 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g-~~nI-~VTAPs 314 (1033)
...++|+|.-|.|||+++-..++.+...+ ..+| +||+-+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 45899999999999999876656555442 2345 566543
No 424
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=72.18 E-value=9.3 Score=41.92 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=45.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|++.|+.+++..-+++.|..|||+.+|+|.+-+-..+.++.++|-+.+.
T Consensus 116 ~Lp~~~R~v~lL~~~eg~S~~EIAe~LgiS~~tVksrL~Rark~Lr~~l~ 165 (228)
T PRK06704 116 SLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSE 165 (228)
T ss_pred hCCHHHhhHhhhHHhhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999998877653
No 425
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.84 E-value=23 Score=42.59 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~ 315 (1033)
.+++.++|..|.||||+.+-.++.+...|+ +|.|.+-.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcCcc
Confidence 457899999999999999876666666676 666655544
No 426
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=71.77 E-value=13 Score=38.09 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=44.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..||+.|..+|.. -.+++|-.+||++||++.+.+-...+.+++++-+.+..+
T Consensus 5 ~~Lt~rqreVL~l-r~~GlTq~EIAe~LGiS~~tVs~ie~ra~kkLr~~~~tl 56 (141)
T PRK03975 5 SFLTERQIEVLRL-RERGLTQQEIADILGTSRANVSSIEKRARENIEKARETL 56 (141)
T ss_pred cCCCHHHHHHHHH-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999998877 579999999999999999888888888888887777665
No 427
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=71.57 E-value=5.9 Score=50.62 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=42.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc--------------cccccccccc
Q 001672 280 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK--------------EHIDYDIVRS 345 (1033)
Q Consensus 280 vLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~--------------e~~dy~i~~s 345 (1033)
+.-=..|-|||-+..++++.....|+ .+-|.+|+..=++.=++....-++.||+. +...-+|++.
T Consensus 97 iaEm~TGEGKTLvA~l~a~l~al~G~-~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~ 175 (796)
T PRK12906 97 IAEMKTGEGKTLTATLPVYLNALTGK-GVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYNCDITYS 175 (796)
T ss_pred cccccCCCCCcHHHHHHHHHHHHcCC-CeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHhcCCCeec
Confidence 34445699999999998888888886 46666777543333333333333333321 1123467777
Q ss_pred CCCCCC
Q 001672 346 SNPDLR 351 (1033)
Q Consensus 346 ~~p~~~ 351 (1033)
||.+|.
T Consensus 176 t~~e~g 181 (796)
T PRK12906 176 TNSELG 181 (796)
T ss_pred CCcccc
Confidence 877653
No 428
>TIGR02941 Sigma_B RNA polymerase sigma-B factor. This sigma factor is restricted to certain lineages of the order Bacillales including Staphylococcus, Listeria and Bacillus.
Probab=71.45 E-value=10 Score=41.71 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=45.4
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
..|++.|..++....++++|..+||+.+|++.+.|-..++++++++-+..
T Consensus 204 ~~L~~~~r~ii~l~~~~g~s~~eIA~~lgis~~~V~~~~~ra~~~Lr~~~ 253 (255)
T TIGR02941 204 PILSEREKSIIHCTFEENLSQKETGERLGISQMHVSRLQRQAISKLKEAA 253 (255)
T ss_pred HcCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999998887643
No 429
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=71.41 E-value=7.8 Score=43.75 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=47.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.|+.+++..-+++.|..|||+.||++.+-+...+.++.++|-+++.
T Consensus 141 ~~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~Lr~~l~ 191 (324)
T TIGR02960 141 QYLPPRQRAVLLLRDVLGWRAAETAELLGTSTASVNSALQRARATLDEVGP 191 (324)
T ss_pred HhCCHHHhhHhhhHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 358999999999999999999999999999999999999999999988775
No 430
>PRK05572 sporulation sigma factor SigF; Validated
Probab=71.40 E-value=10 Score=41.62 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.+..++...-+++.|..+||+.+|++.+.|-.+.++++++|-+.+.
T Consensus 201 ~~L~~~~~~v~~l~~~~~~s~~eIA~~lgis~~~V~~~~~ral~kLr~~l~ 251 (252)
T PRK05572 201 RELDERERLIVYLRYFKDKTQSEVAKRLGISQVQVSRLEKKILKQMKEKLD 251 (252)
T ss_pred HcCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhc
Confidence 358999999999999999999999999999999999999999998887654
No 431
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=70.86 E-value=14 Score=45.04 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~ 325 (1033)
||-+|+..+++.+..|. +--+|.|..|.||+-++ |..|+.--.--+|-||+.-=+..|+.=.
T Consensus 16 DQP~AI~~Lv~gi~~g~--~~QtLLGvTGSGKTfT~----AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 16 DQPEAIAELVEGIENGL--KHQTLLGVTGSGKTFTM----ANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CcHHHHHHHHHHHhcCc--eeeEEeeeccCCchhHH----HHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 99999999999887763 45689999999999986 4445432245789999987777776443
No 432
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=70.76 E-value=16 Score=48.04 Aligned_cols=138 Identities=22% Similarity=0.358 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-CeEEEecCChhhHHHHHHHHHhhccccc
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY-SNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~-~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
.-.-|..++..+.. . ... -++|--+=|=|||--.|+.+..++..|. .+|+|.+|. ++ +.++...-.+..+
T Consensus 153 l~pHQl~~~~~vl~---~-~~~-R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~--sL--~~QW~~El~~kF~ 223 (956)
T PRK04914 153 LIPHQLYIAHEVGR---R-HAP-RVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE--TL--QHQWLVEMLRRFN 223 (956)
T ss_pred CCHHHHHHHHHHhh---c-cCC-CEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH--HH--HHHHHHHHHHHhC
Confidence 34578887654332 2 222 3566778999999999999888887774 589999995 33 2333322222111
Q ss_pred cccccccccccc----------CCCCCCcceEEEeeeeccceEEEEeCCcc--ccc--cCCccEEEEecccCC------C
Q 001672 334 YKEHIDYDIVRS----------SNPDLRKPIVRINIYRQHRQTIQYMEPHE--HEK--LAQVELLVIDEAAAI------P 393 (1033)
Q Consensus 334 y~e~~dy~i~~s----------~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~--~~~--l~~adLLvIDEAAAI------P 393 (1033)
.+|.++.+ .||....-++ | .++.++..+. ... -..+|+||||||=-| |
T Consensus 224 ----l~~~i~~~~~~~~~~~~~~~pf~~~~~v---I-----~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~ 291 (956)
T PRK04914 224 ----LRFSLFDEERYAEAQHDADNPFETEQLV---I-----CSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAP 291 (956)
T ss_pred ----CCeEEEcCcchhhhcccccCccccCcEE---E-----EEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCc
Confidence 22222221 1221111111 0 0223333321 111 236899999999666 3
Q ss_pred ---HHHHHHhhc--CCeEEEEeccc
Q 001672 394 ---LPVVRSLLG--PYLVFLSSTVN 413 (1033)
Q Consensus 394 ---lplL~~Ll~--~y~V~lsSTI~ 413 (1033)
.-.++.|.. ++++++|.|=+
T Consensus 292 s~~y~~v~~La~~~~~~LLLTATP~ 316 (956)
T PRK04914 292 SREYQVVEQLAEVIPGVLLLTATPE 316 (956)
T ss_pred CHHHHHHHHHhhccCCEEEEEcCcc
Confidence 345666653 56788888876
No 433
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=70.68 E-value=1.2 Score=50.10 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CCeEEEecCChhhHHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAG--YSNIFVTAPSPENLKTLFEFV 325 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g--~~nI~VTAPs~env~tlFef~ 325 (1033)
+.-|++|+..++. .+-|+.-|..|.||+|+.-+.+-+.+..+ ...++|-||+.|-...+-+-+
T Consensus 51 S~IQqrAi~~Ilk-------GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi 115 (400)
T KOG0328|consen 51 SAIQQRAIPQILK-------GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVI 115 (400)
T ss_pred hHHHhhhhhhhhc-------ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHH
Confidence 4579999887654 34789999999999999877777766554 346899999998766654433
No 434
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=70.62 E-value=35 Score=39.59 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=14.7
Q ss_pred CcEEEEEeCCCCCHHHHH
Q 001672 276 RSTVALLAARGRGKSAAL 293 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaL 293 (1033)
.+-++|.|++|.|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999754
No 435
>PRK13531 regulatory ATPase RavA; Provisional
Probab=70.53 E-value=25 Score=42.88 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.2
Q ss_pred CCccEEEEecccCCCHHHHHHhh
Q 001672 379 AQVELLVIDEAAAIPLPVVRSLL 401 (1033)
Q Consensus 379 ~~adLLvIDEAAAIPlplL~~Ll 401 (1033)
+.+++|++||..-.|......|+
T Consensus 106 ~~A~lLfLDEI~rasp~~QsaLL 128 (498)
T PRK13531 106 PEAEIVFLDEIWKAGPAILNTLL 128 (498)
T ss_pred ccccEEeecccccCCHHHHHHHH
Confidence 45789999999999999888777
No 436
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=70.48 E-value=33 Score=43.33 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhh
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKG 328 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kg 328 (1033)
..|.||.+++.++++.+..+. + ..+|+|-.|.||+.++- .+...-...++|-+|+.+-+..+.+-+..-
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~-~-~~ll~Gl~gs~ka~lia----~l~~~~~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGE-K-HQTLLGVTGSGKTFTMA----NVIARLQRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCC-C-cEEEEcCCCcHHHHHHH----HHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 347899999999988886542 2 23599999999998852 333321247999999999998888766433
No 437
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=70.48 E-value=8.1 Score=43.99 Aligned_cols=40 Identities=30% Similarity=0.320 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHhcccC----CcEEEEEeCCCCCHHHHHHH
Q 001672 256 TLDQGKAVITFLDAILDKTL----RSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~ek~~----r~~vvLTA~RGRGKSAaLGl 295 (1033)
+.+|.+.+..+++++...++ ...++|+|-+|.|||++-..
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~ 152 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRM 152 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHH
Confidence 56777878889888665543 45899999999999996554
No 438
>CHL00095 clpC Clp protease ATP binding subunit
Probab=70.43 E-value=14 Score=47.66 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 001672 259 QGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA 302 (1033)
Q Consensus 259 Q~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~ 302 (1033)
..+.+..+++.+..++ +.-++|.|+.|.||||+. -++|..+.
T Consensus 184 r~~ei~~~~~~L~r~~-~~n~lL~G~pGvGKTal~-~~la~~i~ 225 (821)
T CHL00095 184 REKEIERVIQILGRRT-KNNPILIGEPGVGKTAIA-EGLAQRIV 225 (821)
T ss_pred cHHHHHHHHHHHcccc-cCCeEEECCCCCCHHHHH-HHHHHHHH
Confidence 4555666666665554 445689999999999987 44555444
No 439
>COG1595 RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]
Probab=70.36 E-value=11 Score=38.96 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=48.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..|++.|..+++-.-+++-|.+|||+.+|+|.+-|...++.+.+++-+.+...
T Consensus 126 ~~Lp~~~R~~~~l~~~~gls~~EIA~~l~i~~~tVks~l~ra~~~l~~~l~~~ 178 (182)
T COG1595 126 ARLPPRQREAFLLRYLEGLSYEEIAEILGISVGTVKSRLHRARKKLREQLEEA 178 (182)
T ss_pred HhCCHHHhHHhhhHhhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 35899999999999999999999999999999999999999999998887653
No 440
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=70.20 E-value=3.1 Score=49.27 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCcceEEEEEeeCcccccCChHHHHHHHHHHHHhc
Q 001672 610 SLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEG 644 (1033)
Q Consensus 610 ~l~g~RIVRIAvhPd~q~~GyGsraL~~L~~~~~g 644 (1033)
.-.++||-|..|||||+.=|+|...+....++...
T Consensus 238 ntaaariarvvvhpdyr~dglg~~sv~~a~ewI~e 272 (593)
T COG2401 238 NTAAARIARVVVHPDYRADGLGQLSVIAALEWIIE 272 (593)
T ss_pred hhhhhheeEEEeccccccCccchhHHHHHHHHHHH
Confidence 44679999999999999999999999988887653
No 441
>PRK07122 RNA polymerase sigma factor SigF; Reviewed
Probab=69.52 E-value=11 Score=42.09 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
..|++.|..+|....+++.|..+||+.+|++.+.+-..+++++++|-.++
T Consensus 214 ~~L~~rer~vl~l~y~~~~t~~EIA~~lgis~~~V~~~~~ral~kLr~~l 263 (264)
T PRK07122 214 AALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKTLARLRDQL 263 (264)
T ss_pred HcCCHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999999999999887654
No 442
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=69.48 E-value=9.2 Score=45.39 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC---CeEEEecCChhhHHHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY---SNIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~---~nI~VTAPs~env~tlFef~~ 326 (1033)
.|+-|.|.+-.++ + .+-++=+|--|.||+|+-+|-++..+..+. .+-+|-+|+.+=+...|.++.
T Consensus 44 ptpiqRKTipliL----e---~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvk 111 (529)
T KOG0337|consen 44 PTPIQRKTIPLIL----E---GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVK 111 (529)
T ss_pred CCchhccccccee----e---ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHH
Confidence 4777888665443 3 346788999999999999999998876543 477899999998877777763
No 443
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=68.99 E-value=42 Score=37.91 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=27.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 277 STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
..+++.|..|.|||+++-+.++.+...|..--+|++-
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D 112 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 112 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 5789999999999998887666655555444456553
No 444
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=68.96 E-value=12 Score=42.13 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=32.5
Q ss_pred HHHHhcccCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhh
Q 001672 267 LDAILDKTLR-STVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 317 (1033)
Q Consensus 267 ~~~i~ek~~r-~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~en 317 (1033)
++.+..++.+ ..+=|||..|-|||+.+.-.+..+...|. +|-|-|=.|.+
T Consensus 19 l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~-~VaVlAVDPSS 69 (266)
T PF03308_consen 19 LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGK-RVAVLAVDPSS 69 (266)
T ss_dssp HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGG
T ss_pred HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCC-ceEEEEECCCC
Confidence 3445544333 36889999999999999988888887763 56665555543
No 445
>PRK11823 DNA repair protein RadA; Provisional
Probab=68.95 E-value=12 Score=44.99 Aligned_cols=38 Identities=32% Similarity=0.278 Sum_probs=27.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAP 313 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAP 313 (1033)
.+.++|+|+.|.|||+.+=..++.+...|..=++|+.-
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45889999999999997655544444456655888864
No 446
>PRK09354 recA recombinase A; Provisional
Probab=68.87 E-value=38 Score=39.68 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 317 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~en 317 (1033)
.+++.|.|+-|.|||+..-.+++.+...|-.-+||++...-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence 457889999999999988888887777787779999876444
No 447
>TIGR02885 spore_sigF RNA polymerase sigma-F factor. Members of this protein family are the RNA polymerase sigma factor F. Sigma-F is specifically and universally a component of the Firmicutes lineage endospore formation program, and is expressed in the forespore to turn on expression of dozens of genes. It is closely homologous to sigma-G, which is also expressed in the forespore.
Probab=68.71 E-value=11 Score=40.59 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 908 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~ 908 (1033)
..|++.|+.++...-.++.|..+||+.+|++...|-.+.++++++|-..
T Consensus 182 ~~L~~~e~~i~~~~~~~~~t~~eIA~~lgis~~~V~~~~~~al~~Lr~~ 230 (231)
T TIGR02885 182 SKLDERERQIIMLRYFKDKTQTEVANMLGISQVQVSRLEKKVLKKMKEK 230 (231)
T ss_pred HcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 3689999999988889999999999999999999999999999888654
No 448
>PRK10865 protein disaggregation chaperone; Provisional
Probab=68.28 E-value=23 Score=46.00 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.8
Q ss_pred hccCcEEEEEeCCCchhhhhhccccccccccc
Q 001672 140 VEGGGLIVLLLRSLSSLTRLCTMVMDVHERFR 171 (1033)
Q Consensus 140 V~GGGlvvLLl~~~~sl~qlyt~~md~h~r~r 171 (1033)
+.-|.+.++..-+.+.++++.+......+||.
T Consensus 303 l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~ 334 (857)
T PRK10865 303 LARGELHCVGATTLDEYRQYIEKDAALERRFQ 334 (857)
T ss_pred hhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC
Confidence 45688999999898888887777777778884
No 449
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=68.27 E-value=10 Score=42.52 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=45.2
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.|..+++..-+++.|.+|||+.+|++..-+...+.++.++|-+.+
T Consensus 115 ~L~~~~R~v~~L~~~~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~ 163 (293)
T PRK09636 115 RLSPLERAAFLLHDVFGVPFDEIASTLGRSPAACRQLASRARKHVRAAR 163 (293)
T ss_pred hCCHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999999999999999999988887654
No 450
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=67.92 E-value=37 Score=45.13 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=55.7
Q ss_pred ccCCCCCcccccCCCHHHHHHHHHHHHHHhcccC-CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHH
Q 001672 242 CDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTL-RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKT 320 (1033)
Q Consensus 242 ~~~~p~~~L~~~~~T~DQ~~av~~~~~~i~ek~~-r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~t 320 (1033)
.+.+|-. -|.||.+|+.++.+-+..+.. -| +|+||=|=||+=+.==|+=.|+..| ..|.|-.|+-==++.
T Consensus 588 ~~~FPye------ET~DQl~AI~eVk~DM~~~kpMDR--LiCGDVGFGKTEVAmRAAFkAV~~G-KQVAvLVPTTlLA~Q 658 (1139)
T COG1197 588 EASFPYE------ETPDQLKAIEEVKRDMESGKPMDR--LICGDVGFGKTEVAMRAAFKAVMDG-KQVAVLVPTTLLAQQ 658 (1139)
T ss_pred HhcCCCc------CCHHHHHHHHHHHHHhccCCcchh--eeecCcCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHhHHH
Confidence 3566654 499999999988766654332 23 7999999999986544444455556 579999998766666
Q ss_pred HHHHHHhhcc
Q 001672 321 LFEFVCKGFN 330 (1033)
Q Consensus 321 lFef~~kgl~ 330 (1033)
=|+=...-|.
T Consensus 659 Hy~tFkeRF~ 668 (1139)
T COG1197 659 HYETFKERFA 668 (1139)
T ss_pred HHHHHHHHhc
Confidence 6655554444
No 451
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=67.80 E-value=12 Score=41.85 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=44.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDY 908 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~ 908 (1033)
-.|++.|..+++..-+++.|.+|||+.||++.+.+...+.++.++|-++
T Consensus 107 ~~L~~~~R~v~~L~~~~g~s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~ 155 (281)
T TIGR02957 107 ERLSPLERAVFVLREVFDYPYEEIASIVGKSEANCRQLVSRARRHLDAR 155 (281)
T ss_pred hhCCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999999999999999999999999999999888654
No 452
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.56 E-value=22 Score=42.19 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCCeE-EEecCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIA----AGYSNI-FVTAPS 314 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~----~g~~nI-~VTAPs 314 (1033)
.+.+++.|..|-|||++++-.++.+.. .|. +| +||+=+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~-~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSL-NIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCC-eEEEEeccC
Confidence 458999999999999999866665543 244 55 566554
No 453
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=67.55 E-value=13 Score=40.45 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=44.0
Q ss_pred CccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~g----LQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.|+.||..+- .+++|..+||+++|++...|-.+..++++||-...
T Consensus 176 ~L~~~er~vl~l~ygl~~~~~~t~~EIA~~lgis~~~V~q~~~~al~kLr~~~ 228 (238)
T TIGR02393 176 TLTERERKVLRMRYGLLDGRPHTLEEVGKEFNVTRERIRQIESKALRKLRHPS 228 (238)
T ss_pred hCCHHHHHHHHHHhCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhH
Confidence 58899888888876 79999999999999999999999999999988764
No 454
>TIGR02859 spore_sigH RNA polymerase sigma-H factor. Members of this protein family are RNA polymerase sigma-H factor for sporulation in endospore-forming bacteria. This protein is also called Sigma-30 and SigH. Although rather close homologs are detected in Listeria, Listeria does not form spores and the role of the related sigma factor in that genus is in doubt.
Probab=67.51 E-value=12 Score=38.86 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 862 LSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 862 Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
++..+..+++ ..++++|..+||+++|+|.+.|...+.++.++|-+++
T Consensus 151 l~~~~~~i~~-~~~~~~s~~eIA~~l~~s~~tV~~~l~r~r~~L~~~l 197 (198)
T TIGR02859 151 LSDLEWKVLQ-SYLDGKSYQEIACDLNRHVKSIDNALQRVKRKLEKYL 197 (198)
T ss_pred cCHHHHHHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 4455555655 4899999999999999999999988888888877654
No 455
>PHA00350 putative assembly protein
Probab=67.36 E-value=34 Score=40.74 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCHHHHH-HHHHHHHHHcCCCeEEEe
Q 001672 278 TVALLAARGRGKSAAL-GLAIAGAIAAGYSNIFVT 311 (1033)
Q Consensus 278 ~vvLTA~RGRGKSAaL-GlaiA~~i~~g~~nI~VT 311 (1033)
..++||..|.|||+-. ...+--++..| |+++|
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~G--R~V~T 35 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDG--RKVIT 35 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCC--CEEEE
Confidence 4589999999999743 32344455566 78888
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=67.22 E-value=9.6 Score=37.21 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh
Q 001672 279 VALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 315 (1033)
Q Consensus 279 vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~ 315 (1033)
++|+|+.|.|||+.+...+..+...|..-++++.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 5799999999999887776666666655566666544
No 457
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=67.21 E-value=13 Score=41.57 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=32.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 001672 250 LIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 300 (1033)
Q Consensus 250 L~~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~ 300 (1033)
|..+..+.+|.+.+..++. . .+..++|+|.-|.|||++|--.+...
T Consensus 59 l~~lg~~~~~~~~l~~~~~---~--~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 59 LEKLGLKPENLEIFRKLLE---K--PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHcCCCHHHHHHHHHHHh---c--CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 4445567788887765442 1 24589999999999999996555543
No 458
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=67.12 E-value=11 Score=45.36 Aligned_cols=140 Identities=19% Similarity=0.285 Sum_probs=88.5
Q ss_pred HHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccc
Q 001672 265 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVR 344 (1033)
Q Consensus 265 ~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~ 344 (1033)
.|++.+.. +..+++.|+.|.||||-+--.++......-.-|..|-|..-++-.+-.-+...+|. ...+.+.|.|-.
T Consensus 54 ~F~~~l~~---nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv-~lG~EVGysIrf 129 (699)
T KOG0925|consen 54 EFLKLLLN---NQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDV-TLGEEVGYSIRF 129 (699)
T ss_pred HHHHHHhc---CceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhcc-ccchhccccccc
Confidence 56665544 45899999999999999988887655432357999999999888887777666653 222334454432
Q ss_pred cCCCCCCcceEEEeeeeccceEEEEeCCcccc-------ccCCccEEEEeccc--CCCHHHHHHhhc------CC--eEE
Q 001672 345 SSNPDLRKPIVRINIYRQHRQTIQYMEPHEHE-------KLAQVELLVIDEAA--AIPLPVVRSLLG------PY--LVF 407 (1033)
Q Consensus 345 s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~-------~l~~adLLvIDEAA--AIPlplL~~Ll~------~y--~V~ 407 (1033)
. .| .+.+--+.|+--.-+. -++...++|.|||- .+-..+|..|+. |- +|+
T Consensus 130 E------dC-------~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vv 196 (699)
T KOG0925|consen 130 E------DC-------TSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVV 196 (699)
T ss_pred c------cc-------CChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEE
Confidence 1 01 0112224455544332 24678899999985 344455555552 33 588
Q ss_pred EEecccCCCCCCcchhHHHHHHh
Q 001672 408 LSSTVNGYEGTGRSLSLKLLHQL 430 (1033)
Q Consensus 408 lsSTI~GYEGTGRgfsLKf~~~L 430 (1033)
||+|. ..=||..+.
T Consensus 197 mSatl---------~a~Kfq~yf 210 (699)
T KOG0925|consen 197 MSATL---------DAEKFQRYF 210 (699)
T ss_pred eeccc---------chHHHHHHh
Confidence 99984 344666665
No 459
>TIGR02835 spore_sigmaE RNA polymerase sigma-E factor. Members of this family comprise the Firmicutes lineage endospore formation-specific sigma factor SigE, also called SpoIIGB and sigma-29. As characterized in Bacillus subtilis, this protein is synthesized as a precursor, specifically in the mother cell compartment, and must cleaved by the SpoIIGA protein to be made active.
Probab=66.90 E-value=15 Score=39.95 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=44.3
Q ss_pred CCccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 860 VTLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~g----LQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
..|++.++.+++..- +++.|..+||+.+|++.+-|-..+.+++++|-+++..
T Consensus 177 ~~Lp~~~R~ii~L~~~l~~~eg~s~~EIA~~Lgis~~tV~~~l~ra~~~LR~~l~~ 232 (234)
T TIGR02835 177 AKLNDREKKIMELRFGLVGGTEKTQKEVADMLGISQSYISRLEKRILKRLKKEINR 232 (234)
T ss_pred HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 358898888888775 3899999999999999999999998998888877654
No 460
>TIGR00721 tfx DNA-binding protein, Tfx family. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.
Probab=66.88 E-value=18 Score=36.97 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=44.1
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI 912 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~ 912 (1033)
..|++.|..++..+ .|+.|-++||++||++.+-+-...++++++|-.+.+.+
T Consensus 5 ~~Lte~qr~VL~Lr-~~GlTq~EIAe~LgiS~stV~~~e~ra~kkLr~a~~~~ 56 (137)
T TIGR00721 5 TFLTERQIKVLELR-EKGLSQKEIAKELKTTRANVSAIEKRAMENIEKARNTL 56 (137)
T ss_pred CCCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHhHHHHHHHHhhHH
Confidence 35888888888775 69999999999999999999999999998887655443
No 461
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=66.83 E-value=8.5 Score=39.75 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.7
Q ss_pred eCcccccCChHHHHHHHHHHHHh
Q 001672 621 THPSAMRLGYGSTAVELLTRYYE 643 (1033)
Q Consensus 621 vhPd~q~~GyGsraL~~L~~~~~ 643 (1033)
.-|.-||.|||+.++..+..|..
T Consensus 115 AEP~~RgKG~G~eav~~ml~y~~ 137 (185)
T KOG4135|consen 115 AEPRGRGKGIGTEAVRAMLAYAY 137 (185)
T ss_pred ecccccCCCccHHHHHHHHHHHH
Confidence 37999999999999999999865
No 462
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=66.73 E-value=7.9 Score=49.98 Aligned_cols=55 Identities=15% Similarity=0.015 Sum_probs=39.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 280 ALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 280 vLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
+.-+..|-|||.+.-|.+......|. .+.|.+|+.+=++.-.+....-++.||..
T Consensus 99 IaEm~TGEGKTL~a~lp~~l~al~g~-~VhIvT~ndyLA~RD~e~m~~l~~~lGls 153 (908)
T PRK13107 99 IAEMRTGEGKTLTATLPAYLNALTGK-GVHVITVNDYLARRDAENNRPLFEFLGLT 153 (908)
T ss_pred cccccCCCCchHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 56778899999998887765555563 58888999887776666665555555544
No 463
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=66.58 E-value=17 Score=39.49 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=19.7
Q ss_pred CccEEEEecccCCCHHHHHHhhcC
Q 001672 380 QVELLVIDEAAAIPLPVVRSLLGP 403 (1033)
Q Consensus 380 ~adLLvIDEAAAIPlplL~~Ll~~ 403 (1033)
+--+|++||++-.+-.+|..|..+
T Consensus 106 h~GVLflDE~~ef~~~vld~Lr~p 129 (206)
T PF01078_consen 106 HRGVLFLDELNEFDRSVLDALRQP 129 (206)
T ss_dssp TTSEEEECETTTS-HHHHHHHHHH
T ss_pred cCCEEEechhhhcCHHHHHHHHHH
Confidence 457999999999999999988743
No 464
>TIGR01636 phage_rinA phage transcriptional activator, RinA family. This model represents a family of phage proteins, including RinA, a transcriptional activator in staphylococcal phage phi 11. This family shows similarity to ArpU, a phage-related putative autolysin regulator, and to some sporulation-specific sigma factors.
Probab=66.46 E-value=18 Score=36.42 Aligned_cols=49 Identities=8% Similarity=0.153 Sum_probs=44.2
Q ss_pred CccHHHHHHHHHHHhcCC--CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQ--DISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~k--s~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.+..|+-.+-++.. +|.+||.++|++..++...-++++.++...+
T Consensus 82 ~Ld~~er~II~~rY~~~~~~t~~~Ia~~l~iS~~t~~r~r~~~l~kla~~l 132 (134)
T TIGR01636 82 EADEQTRVIIQELYMKKRPLTLVGLAQQLFISKSTAYRLRNHIIEAVAEEL 132 (134)
T ss_pred hCCHHHHHHHHHHHccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 478889999999989887 9999999999999999999999999988765
No 465
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=66.37 E-value=23 Score=45.93 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=25.1
Q ss_pred hccCcEEEEEeCCCchhhhhhcccccccccccc
Q 001672 140 VEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRT 172 (1033)
Q Consensus 140 V~GGGlvvLLl~~~~sl~qlyt~~md~h~r~rt 172 (1033)
+.-|.+.|+..-+.+.++.+.+......+||..
T Consensus 298 l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~ 330 (852)
T TIGR03346 298 LARGELHCIGATTLDEYRKYIEKDAALERRFQP 330 (852)
T ss_pred hhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCE
Confidence 456888888888888888777766667778863
No 466
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.18 E-value=16 Score=46.15 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=35.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCCeEEEecCChhhHHHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIA--AGYSNIFVTAPSPENLKTLFEFVC 326 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~--~g~~nI~VTAPs~env~tlFef~~ 326 (1033)
++.+.|+|+.|=|||++ |..|| .||+-|=|-|-.-..+.++=+-+.
T Consensus 326 kKilLL~GppGlGKTTL-----AHViAkqaGYsVvEINASDeRt~~~v~~kI~ 373 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTL-----AHVIAKQAGYSVVEINASDERTAPMVKEKIE 373 (877)
T ss_pred cceEEeecCCCCChhHH-----HHHHHHhcCceEEEecccccccHHHHHHHHH
Confidence 56899999999999995 44443 499999999987777766655443
No 467
>PHA02244 ATPase-like protein
Probab=65.99 E-value=43 Score=39.71 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=16.0
Q ss_pred CcEEEEEeCCCCCHHHHH
Q 001672 276 RSTVALLAARGRGKSAAL 293 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaL 293 (1033)
+.+|.|+|+.|.|||+..
T Consensus 119 ~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 558999999999999866
No 468
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=65.98 E-value=14 Score=35.95 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=40.4
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
-||..|..++-......-|.++||+++|++..-|...++++..+|..|=.
T Consensus 17 LLT~kQ~~~l~lyy~eDlSlsEIAe~~~iSRqaV~d~ikr~~~~L~~yE~ 66 (101)
T PF04297_consen 17 LLTEKQREILELYYEEDLSLSEIAEELGISRQAVYDSIKRAEKKLEEYEE 66 (101)
T ss_dssp GS-HHHHHHHHHHCTS---HHHHHHHCTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988865543
No 469
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.97 E-value=28 Score=41.79 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=28.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH-HHcCCCeEEEecCC
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGA-IAAGYSNIFVTAPS 314 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~-i~~g~~nI~VTAPs 314 (1033)
++.++++|+-|.|||+++.-.++.+ ...|..=.+||+=.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4578899999999999998877654 45675333555544
No 470
>TIGR01637 phage_arpU phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family.
Probab=65.81 E-value=17 Score=36.13 Aligned_cols=50 Identities=6% Similarity=0.051 Sum_probs=46.3
Q ss_pred CccHHHHHHHHHHHhc--CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGML--GQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ--~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
.|+..++.||..+-++ +++|.+|+.++|++.++.-.+-++|+.+|...|.
T Consensus 79 ~l~~~~r~Il~~~Yl~~~~~~~~~I~~~l~~s~~~~y~~k~~Al~~fA~~l~ 130 (132)
T TIGR01637 79 QLDEISRQILYDKYLEPDQKYDYQIMMELGYSHRQYYRIKKRALLRFATLYG 130 (132)
T ss_pred hCCHHHHHHHHHHHcCccccchHHHHHHhCCcHHHHHHHHHHHHHHHHHHhC
Confidence 4788899999999999 9999999999999999999999999999988774
No 471
>PRK12427 flagellar biosynthesis sigma factor; Provisional
Probab=65.76 E-value=14 Score=40.43 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=42.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTD 907 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~ 907 (1033)
..|++.++.++..+..+++|..+||+++|++..++-.+.++++++|-.
T Consensus 182 ~~L~~~er~vi~l~~~~~~t~~EIA~~lgis~~~V~q~~~~~~~kLr~ 229 (231)
T PRK12427 182 SQLDEREQLILHLYYQHEMSLKEIALVLDLTEARICQLNKKIAQKIKS 229 (231)
T ss_pred HcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999888888888887754
No 472
>TIGR02394 rpoS_proteo RNA polymerase sigma factor RpoS. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoS (also called sigma-38, KatF, etc.), found only in Proteobacteria. This sigma factor is induced in stationary phase (in response to the stress of nutrient limitation) and becomes the second prinicipal sigma factor at that time. RpoS is a member of the larger Sigma-70 subfamily (TIGR02937) and most closely related to RpoD (TIGR02393).
Probab=65.66 E-value=16 Score=41.06 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=46.2
Q ss_pred CCccHHHHHHHHHHH----hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Q 001672 860 VTLSYVQAAVLLYIG----MLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYE 911 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~g----LQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~ 911 (1033)
..|++.|+.|+...- +++.|..+||+.||++.+-|-..+.+++++|-+.+..
T Consensus 221 ~~Lp~~~R~Vl~l~ygL~~~e~~s~~EIA~~Lgis~~tVk~~l~rAlkkLr~~l~~ 276 (285)
T TIGR02394 221 AELNERQREVLARRFGLLGYEPATLEEVAAEVGLTRERVRQIQVEALKKLRRILER 276 (285)
T ss_pred HcCCHHHHHHHHHHhCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 358899998888774 8999999999999999999999999999999888863
No 473
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=65.50 E-value=17 Score=36.80 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=26.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPEN 317 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~en 317 (1033)
...++|.|+-|.|||+..-. ++.. .|.. -.||||+..=
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~-l~~~--lg~~-~~v~SPTf~l 59 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQG-LLQG--LGIQ-GNVTSPTFTL 59 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHH-HHHH--cCCC-CcccCCCeee
Confidence 45899999999999997643 2322 2543 3599998443
No 474
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=65.37 E-value=26 Score=39.35 Aligned_cols=117 Identities=19% Similarity=0.276 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-CeEEEecCChhhHHHHHHHHHhhccccccc
Q 001672 257 LDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGY-SNIFVTAPSPENLKTLFEFVCKGFNAIEYK 335 (1033)
Q Consensus 257 ~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~-~nI~VTAPs~env~tlFef~~kgl~aLgy~ 335 (1033)
.+-.+++..+.-.++++ +..+++||.=|.|||.+.- |+.+....+. .-|+|-+|+.. ..++-+-++--|..
T Consensus 34 a~h~e~l~~l~~~i~d~--qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s-~~~~~~ai~~~l~~---- 105 (269)
T COG3267 34 ADHNEALLMLHAAIADG--QGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLS-DATLLEAIVADLES---- 105 (269)
T ss_pred hhhhHHHHHHHHHHhcC--CceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchh-HHHHHHHHHHHhcc----
Confidence 45556777787778776 5589999999999999998 5555444321 22456666543 44554444433321
Q ss_pred ccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccc-cCCccEEEEecccCCCHHHHHHhh
Q 001672 336 EHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEK-LAQVELLVIDEAAAIPLPVVRSLL 401 (1033)
Q Consensus 336 e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~-l~~adLLvIDEAAAIPlplL~~Ll 401 (1033)
+|.++. ..-..+-++ .. +++.+ ....-.++||||=.+-.+.+..|-
T Consensus 106 -----------~p~~~~---~~~~e~~~~----~L--~al~~~g~r~v~l~vdEah~L~~~~le~Lr 152 (269)
T COG3267 106 -----------QPKVNV---NAVLEQIDR----EL--AALVKKGKRPVVLMVDEAHDLNDSALEALR 152 (269)
T ss_pred -----------Cccchh---HHHHHHHHH----HH--HHHHHhCCCCeEEeehhHhhhChhHHHHHH
Confidence 221100 000000000 00 01122 233468999999999988887664
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=65.14 E-value=16 Score=38.21 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA 302 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~ 302 (1033)
+.+.+|.+.+...++ . +..++|+|+.|.|||+++.. ++..+.
T Consensus 9 ~~~~~~~~~l~~~v~---~---g~~i~I~G~tGSGKTTll~a-L~~~i~ 50 (186)
T cd01130 9 TFSPLQAAYLWLAVE---A---RKNILISGGTGSGKTTLLNA-LLAFIP 50 (186)
T ss_pred CCCHHHHHHHHHHHh---C---CCEEEEECCCCCCHHHHHHH-HHhhcC
Confidence 446778776653332 2 45899999999999999865 444443
No 476
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=65.09 E-value=1.3e+02 Score=32.49 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=30.0
Q ss_pred CHHHHHHHHHCCCeEEEeeecccCCCCcceEEEEccCCc
Q 001672 710 TLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS 748 (1033)
Q Consensus 710 T~~Ll~FW~k~gF~pvylrq~~n~~tGEhS~imlk~L~~ 748 (1033)
++.+.+-+++.||.+..|+.... .-|+.++...-+++.
T Consensus 148 ~~~~~r~l~r~G~~~~~lG~~~~-~g~~~~~a~~i~v~~ 185 (207)
T PRK13834 148 DLRFERILARAGWPMQRLGEPKA-IGNTMAVAGILPADR 185 (207)
T ss_pred CHHHHHHHHHcCCCeEECCCCEE-ECCeEEEEEEEECCH
Confidence 56788999999999999998775 566666666667775
No 477
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=64.59 E-value=93 Score=35.77 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|..++..|..++..++.....+++|+.|-||+++. +++|..+
T Consensus 8 Gq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A-~~~a~~l 50 (314)
T PRK07399 8 GQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAA-LCFIEGL 50 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 477777888888888887789999999999998743 3444443
No 478
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=64.10 E-value=30 Score=44.12 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhccc--------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKT--------LRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~--------~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|..|+..+.+++.... ....++++|+.|.|||.+.- ++|..+
T Consensus 458 GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~-~la~~l 508 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAK-QLAEAL 508 (731)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHH-HHHHHh
Confidence 47778887777766321 12247899999999996443 344433
No 479
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=63.74 E-value=11 Score=46.66 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=82.3
Q ss_pred HHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHH-HHHhhccccccccccccccc
Q 001672 265 TFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFE-FVCKGFNAIEYKEHIDYDIV 343 (1033)
Q Consensus 265 ~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFe-f~~kgl~aLgy~e~~dy~i~ 343 (1033)
.++++++... -+.|++.+.---|||.++=.+++..+.....+|++.-|+.+.++.+.+ -+...+++-- .+. ..+
T Consensus 23 eimd~~~~~~-v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp---~l~-~~~ 97 (557)
T PF05876_consen 23 EIMDALSDPS-VREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASP---VLR-RKL 97 (557)
T ss_pred HHHHhcCCcC-ccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH---HHH-HHh
Confidence 3566666644 457888999999999965555556677777899999999999988773 2322222110 000 001
Q ss_pred cc-CCCCCCcceEEEeeeeccceEEEEe---CCccccccCCccEEEEecccCCC---------HHHHHHhhcCC----eE
Q 001672 344 RS-SNPDLRKPIVRINIYRQHRQTIQYM---EPHEHEKLAQVELLVIDEAAAIP---------LPVVRSLLGPY----LV 406 (1033)
Q Consensus 344 ~s-~~p~~~~ai~ri~~~~~h~q~Iqyi---~Pd~~~~l~~adLLvIDEAAAIP---------lplL~~Ll~~y----~V 406 (1033)
.. ..-+-...+..+ .|. +.+|.+. +|..+... .++.|+.||....| +.+..+=...| .+
T Consensus 98 ~~~~~~~~~~t~~~k-~f~--gg~l~~~ga~S~~~l~s~-~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~ 173 (557)
T PF05876_consen 98 SPSKSRDSGNTILYK-RFP--GGFLYLVGANSPSNLRSR-PARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKI 173 (557)
T ss_pred CchhhcccCCchhhe-ecC--CCEEEEEeCCCCcccccC-CcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEE
Confidence 10 000000111111 122 2334433 45444443 48999999999996 44444333223 46
Q ss_pred EEEecccCCCCCCc
Q 001672 407 FLSSTVNGYEGTGR 420 (1033)
Q Consensus 407 ~lsSTI~GYEGTGR 420 (1033)
++.|| -+.||+++
T Consensus 174 ~~~ST-Pt~~~~~~ 186 (557)
T PF05876_consen 174 LRIST-PTIEGTSR 186 (557)
T ss_pred EEeCC-CCCCCCCH
Confidence 66666 56787655
No 480
>PRK07667 uridine kinase; Provisional
Probab=63.69 E-value=23 Score=37.41 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=30.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh
Q 001672 276 RSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 315 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~ 315 (1033)
+..|.|+|..|.|||+..-...+.+-..|..-.+|+.++.
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 4578999999999999887665655556665567777763
No 481
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=63.37 E-value=17 Score=39.91 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=43.3
Q ss_pred HHHHHHHHhc-ccCCcEEEEEeCCCCCHHHHHHHHHHHH--HHcCCC-eEEEecCChhhHHHHHHHHHhhcc
Q 001672 263 VITFLDAILD-KTLRSTVALLAARGRGKSAALGLAIAGA--IAAGYS-NIFVTAPSPENLKTLFEFVCKGFN 330 (1033)
Q Consensus 263 v~~~~~~i~e-k~~r~~vvLTA~RGRGKSAaLGlaiA~~--i~~g~~-nI~VTAPs~env~tlFef~~kgl~ 330 (1033)
+.++.+.+.+ ....+.++|+|..|-|||++.=- ++.- +...|. .++|+.....+...+++.+...|.
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~-~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQ-VARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHH-HHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeee-ccccccccccccccccccccccccccccccccccccc
Confidence 4455555555 23467999999999999997632 2222 223343 468888887777777777766553
No 482
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.37 E-value=12 Score=43.06 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=34.9
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCCeEEEecCCh
Q 001672 252 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA---AGYSNIFVTAPSP 315 (1033)
Q Consensus 252 ~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~---~g~~nI~VTAPs~ 315 (1033)
..|.|.+|-..=.-+.+ +.+. .+..+.+||+.|.|||+.| |+.|. .....-++|=-+|
T Consensus 103 ~~i~~~e~LglP~i~~~-~~~~-~~GLILVTGpTGSGKSTTl----AamId~iN~~~~~HIlTIEDP 163 (353)
T COG2805 103 SKIPTLEELGLPPIVRE-LAES-PRGLILVTGPTGSGKSTTL----AAMIDYINKHKAKHILTIEDP 163 (353)
T ss_pred ccCCCHHHcCCCHHHHH-HHhC-CCceEEEeCCCCCcHHHHH----HHHHHHHhccCCcceEEecCc
Confidence 34555665553333333 4443 3678999999999999998 44443 2333445665555
No 483
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=63.07 E-value=25 Score=45.13 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcc--------cCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDK--------TLRSTVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek--------~~r~~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|.+|+..+.+++... +....+.++|+.|.|||.+.- ++|..+
T Consensus 462 GQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk-~LA~~l 512 (758)
T PRK11034 462 GQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTV-QLSKAL 512 (758)
T ss_pred CcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHH-HHHHHh
Confidence 5888888888877631 123468999999999998664 444444
No 484
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=62.93 E-value=14 Score=44.83 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=41.8
Q ss_pred ccccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCCh
Q 001672 250 LIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSP 315 (1033)
Q Consensus 250 L~~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~ 315 (1033)
+-+++-+.+|.+.+..++. +....+++||+-|.|||++|=-++..+-. +..| ++|.-+|
T Consensus 237 l~~Lg~~~~~~~~~~~~~~-----~p~GliLvTGPTGSGKTTTLY~~L~~ln~-~~~n-I~TiEDP 295 (500)
T COG2804 237 LEKLGMSPFQLARLLRLLN-----RPQGLILVTGPTGSGKTTTLYAALSELNT-PERN-IITIEDP 295 (500)
T ss_pred HHHhCCCHHHHHHHHHHHh-----CCCeEEEEeCCCCCCHHHHHHHHHHHhcC-CCce-EEEeeCC
Confidence 5567778888887766554 24669999999999999999655554432 2234 7787666
No 485
>TIGR02392 rpoH_proteo alternative sigma factor RpoH. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoH and further restricted to the Proteobacteria. This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH. Note that in some species the single locus rpoH may be replaced by two or more differentially regulated stress response sigma factors.
Probab=62.87 E-value=18 Score=40.32 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=43.6
Q ss_pred CccHHHHHHHHHHHhc--CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Q 001672 861 TLSYVQAAVLLYIGML--GQDISCIQEQMKLEADRIFVLFRKVMTKLTDYL 909 (1033)
Q Consensus 861 ~Ls~~q~~iLla~gLQ--~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~ 909 (1033)
.|++.|+.||...-++ ++|..+||+.||++...|-.+.+++++||-..+
T Consensus 218 ~L~~rer~vl~l~y~~~~~~t~~eIA~~lgvS~~~V~q~~~~Al~kLr~~l 268 (270)
T TIGR02392 218 SLDARSRRIIEARWLDDDKLTLQELAAEYGVSAERIRQIEKNAMKKLKAAL 268 (270)
T ss_pred cCCHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 5889999999888765 799999999999999999999999999987654
No 486
>CHL00095 clpC Clp protease ATP binding subunit
Probab=62.61 E-value=27 Score=45.23 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhccc-----CCc---EEEEEeCCCCCHHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKT-----LRS---TVALLAARGRGKSAALGLAIAGAI 301 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~-----~r~---~vvLTA~RGRGKSAaLGlaiA~~i 301 (1033)
.|..|+..+.+++...+ .++ .++++|+.|.|||.+... +|..+
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~-LA~~l 563 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKA-LASYF 563 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHH-HHHHh
Confidence 58889988888876321 122 478999999999975543 44433
No 487
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=62.61 E-value=24 Score=45.82 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHH
Q 001672 255 STLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEF 324 (1033)
Q Consensus 255 ~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef 324 (1033)
....|.+.+..+.+++.++ +.+++-|+.|.|||.|--+.+......+ .+|+|++|+.+=...+++-
T Consensus 246 ~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~~~~~~~~-~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 246 YRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPALYYAITE-KPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred cCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHHHHHhcCC-CeEEEEeCcHHHHHHHHHH
Confidence 3467888777777777653 4788999999999988766654433223 5899999998866666543
No 488
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=62.28 E-value=19 Score=38.49 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLT 906 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~ 906 (1033)
..||+.|..|| .+..||++..+||++|+++.+.+......+++|+-
T Consensus 132 ~~LSpRErEVL-rLLAqGkTnKEIAe~L~IS~rTVkth~srImkKLg 177 (198)
T PRK15201 132 RHFSVTERHLL-KLIASGYHLSETAALLSLSEEQTKSLRRSIMRKLH 177 (198)
T ss_pred CCCCHHHHHHH-HHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 45899887765 56889999999999999999999888888887764
No 489
>PRK06851 hypothetical protein; Provisional
Probab=62.17 E-value=17 Score=42.71 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=47.8
Q ss_pred cccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCC-eEEEecCChhhHHHH
Q 001672 251 IKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYS-NIFVTAPSPENLKTL 321 (1033)
Q Consensus 251 ~~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~-nI~VTAPs~env~tl 321 (1033)
...+.|.+ -...+++.+.+. .++.++|||+.|.|||+++.-.+..+...|+. .++=|+=.|+++.-+
T Consensus 193 F~ga~Tp~---G~~s~~~~l~~~-~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD~v 260 (367)
T PRK06851 193 FLGAITPK---GAVDFVPSLTEG-VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDMV 260 (367)
T ss_pred eccccCCC---cHHhhHHhHhcc-cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcceE
Confidence 34444543 234567777654 46789999999999999999999999999974 455666667666443
No 490
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=62.10 E-value=13 Score=42.33 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTD 907 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~ 907 (1033)
..|++.|+.+++..-+++.|..|||+.||++.+-+...+.++.++|-+
T Consensus 152 ~~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~RAr~~Lr~ 199 (339)
T PRK08241 152 QHLPPRQRAVLILRDVLGWSAAEVAELLDTSVAAVNSALQRARATLAE 199 (339)
T ss_pred HhCCHHHhhhhhhHHhhCCCHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 358899999999999999999999999999999999999999888775
No 491
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=62.04 E-value=43 Score=38.49 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=18.9
Q ss_pred CccEEEEecccCCCHHHHHHhh
Q 001672 380 QVELLVIDEAAAIPLPVVRSLL 401 (1033)
Q Consensus 380 ~adLLvIDEAAAIPlplL~~Ll 401 (1033)
+...|+|||+-.+|..+..+|+
T Consensus 100 ~gGtL~l~~i~~L~~~~Q~~L~ 121 (326)
T PRK11608 100 DGGTLFLDELATAPMLVQEKLL 121 (326)
T ss_pred CCCeEEeCChhhCCHHHHHHHH
Confidence 3568999999999999888776
No 492
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=61.93 E-value=18 Score=39.52 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=19.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGLAIA 298 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGlaiA 298 (1033)
.+.++|||+.|-|||+.+=....
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998866544
No 493
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=61.79 E-value=55 Score=38.04 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.7
Q ss_pred CcEEEEEeCCCCCHHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALGL 295 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLGl 295 (1033)
++.+.|+|..|.|||++.-.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~ 83 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQ 83 (327)
T ss_pred CCcEEEEeCCCChHHHHHHH
Confidence 45799999999999997643
No 494
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=61.55 E-value=39 Score=41.03 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.9
Q ss_pred CcEEEEEeCCCCCHHHHHH
Q 001672 276 RSTVALLAARGRGKSAALG 294 (1033)
Q Consensus 276 r~~vvLTA~RGRGKSAaLG 294 (1033)
.+-++|.|+.|.|||++.-
T Consensus 88 ~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4468999999999999754
No 495
>PLN03025 replication factor C subunit; Provisional
Probab=61.47 E-value=16 Score=41.67 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 001672 258 DQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 300 (1033)
Q Consensus 258 DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~ 300 (1033)
.|..++..+...+..++.. .++++|++|.|||+++=..+..+
T Consensus 17 g~~~~~~~L~~~~~~~~~~-~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 17 GNEDAVSRLQVIARDGNMP-NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CcHHHHHHHHHHHhcCCCc-eEEEECCCCCCHHHHHHHHHHHH
Confidence 3555555554444444433 47899999999998775444444
No 496
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.30 E-value=21 Score=45.85 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Q 001672 277 STVALLAARGRGKSAALGLAIAG 299 (1033)
Q Consensus 277 ~~vvLTA~RGRGKSAaLGlaiA~ 299 (1033)
+.++|||+.|-|||++|-.....
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 58899999999999999876655
No 497
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=61.16 E-value=84 Score=36.36 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=53.7
Q ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHHHHHHHHhhcccccccccccccccccCCC--CC
Q 001672 273 KTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNP--DL 350 (1033)
Q Consensus 273 k~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~tlFef~~kgl~aLgy~e~~dy~i~~s~~p--~~ 350 (1033)
++....++++|++|.||+++.=.. |.++.. .+|...+..- --+.....+.-..|-||..+..+.. +-
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~-a~~llC-------~~~~~~~~~C---g~C~~C~~~~~~~HpD~~~~~p~~~~~~~ 86 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFA-AQALLC-------ETPAPGHKPC---GECMSCHLFGQGSHPDFYEITPLSDEPEN 86 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHH-HHHHcC-------CCCCCCCCCC---CcCHHHHHHhcCCCCCEEEEecccccccc
Confidence 345668999999999999866443 443321 1221110000 0000111112235666665543221 11
Q ss_pred Cc--ceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHhh
Q 001672 351 RK--PIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLL 401 (1033)
Q Consensus 351 ~~--ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~Ll 401 (1033)
++ ..++|.-.|.-...+ +..|.. +..-++|||+|.++.......|+
T Consensus 87 g~~~~~I~id~iR~l~~~~-~~~p~~----~~~kV~iiEp~~~Ld~~a~naLL 134 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNV-YLTSVR----GGLRVILIHPAESMNLQAANSLL 134 (325)
T ss_pred cccCCCcCHHHHHHHHHHH-hhCccc----CCceEEEEechhhCCHHHHHHHH
Confidence 11 112333333222222 223332 34678999999999887655555
No 498
>PRK09191 two-component response regulator; Provisional
Probab=61.12 E-value=18 Score=38.88 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=45.2
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Q 001672 860 VTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 860 ~~Ls~~q~~iLla~gLQ~ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~ 910 (1033)
..|++.|+.+++..-+|+.|..|||+.+|++.+-+...+.++.+++-+.+.
T Consensus 87 ~~L~~~~r~v~~l~~~~~~s~~eIA~~l~~s~~tV~~~l~ra~~~l~~~~~ 137 (261)
T PRK09191 87 AGLTPLPRQAFLLTALEGFSVEEAAEILGVDPAEAEALLDDARAEIARQVA 137 (261)
T ss_pred HhCCHHHhHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHHHHhccCC
Confidence 357889999999999999999999999999999999999998888875543
No 499
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=60.84 E-value=50 Score=29.06 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=18.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCC
Q 001672 279 VALLAARGRGKSAALGLAIAGAIAAGY 305 (1033)
Q Consensus 279 vvLTA~RGRGKSAaLGlaiA~~i~~g~ 305 (1033)
++++|..|-|||+..=-.+..+...|+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~ 28 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK 28 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 578888999999976544444434454
No 500
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=60.66 E-value=28 Score=36.96 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=28.8
Q ss_pred cCCcEEEEEe-CCCCCHHH-HHHHHHHHHHHcCCCeEEE-ecCChhhHHHHH
Q 001672 274 TLRSTVALLA-ARGRGKSA-ALGLAIAGAIAAGYSNIFV-TAPSPENLKTLF 322 (1033)
Q Consensus 274 ~~r~~vvLTA-~RGRGKSA-aLGlaiA~~i~~g~~nI~V-TAPs~env~tlF 322 (1033)
...+++++|+ .-|-|||+ +..||.+.+...|+.=++| +-|...++...|
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~ 84 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTL 84 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhhee
Confidence 3455777885 55999999 5556655554467633344 334433454444
Done!