Query 001672
Match_columns 1033
No_of_seqs 299 out of 693
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 15:48:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001672.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_971-975//hhsearch_pdb/001672hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zpa_A Uncharacterized protein 1.0 1 1 1151.8 60.4 643 7-910 5-653 (671)
2 3upu_A ATP-dependent DNA helic 1.0 1 1 72.1 15.5 182 254-476 25-212 (459)
3 3e1s_A Exodeoxyribonuclease V, 1.0 1 1 70.8 14.3 169 252-475 187-359 (574)
4 1w36_D RECD, exodeoxyribonucle 1.0 1 1 69.1 18.2 199 256-474 151-374 (608)
5 3kkw_A Putative uncharacterize 1.0 1 1 64.0 11.4 122 527-747 56-181 (182)
6 1q2y_A Protein YJCF, similar t 1.0 1 1 62.4 10.7 130 512-745 8-140 (140)
7 4e0a_A BH1408 protein; structu 1.0 1 1 61.6 13.2 123 528-738 38-161 (164)
8 3d2m_A Putative acetylglutamat 1.0 1 1 61.5 4.6 115 529-747 335-455 (456)
9 3fix_A N-acetyltransferase; te 1.0 1 1 60.9 10.6 107 531-745 70-182 (183)
10 2x7b_A N-acetyltransferase SSO 1.0 1 1 59.9 10.7 81 612-746 86-168 (168)
No 1
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=1151.77 Aligned_cols=643 Identities=23% Similarity=0.336 Sum_probs=548.1
Q ss_pred HHHHHHHHHHHHCCEEEEEEEEECCCHH--HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999986833806899999088224--69999999776220588809999508721113689999999999752889
Q 001672 7 ERIRTLIENGVKQRHRSMFVIIGDKSRD--QIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHKKKRQKQIKKLMQRGLL 84 (1033)
Q Consensus 7 ~ri~~Lien~v~~~~Rs~~vivGd~~~~--qv~~lh~~l~~~~~~~~psvLwcyk~~l~fss~~kkR~~~~kk~~~~g~~ 84 (1033)
.-+..+.+...+.+||+++|+.||..|- ++.. +.. . ..++++|.....
T Consensus 5 ~~l~~~~~~~~~~~~RrLlvl~G~~~w~~~~a~~---l~~-~---~~~~~~wv~~~~----------------------- 54 (671)
T 2zpa_A 5 TALHTLTAQMKREGIRRLLVLSGEEGWCFEHTLK---LRD-A---LPGDWLWISPRP----------------------- 54 (671)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHH---HHH-H---SCSCCEEECCCC-----------------------
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHH---HHH-H---CCCCCEEECCCC-----------------------
T ss_conf 8999999999981971699997878999999999---987-3---578861645887-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCC
Q ss_conf 99978932111124776310012243220342144898057899977999985100129399998178760343202564
Q 001672 85 DPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVM 164 (1033)
Q Consensus 85 ~~~~~d~f~~F~~~~~Ir~~~Yket~kiLG~T~~mlVlqdfe~ltPN~LartieTV~GGGlivlLl~~~~sl~qlyt~~m 164 (1033)
...+||+|++++++|||||+|||+|+|++|+||+|||++|||+|||++|||+|+|++|+++ |
T Consensus 55 --------------~~~~~~~~~~~~~~LG~e~~~~v~d~~~~~~pn~la~~~gtv~gGG~lvll~p~~~~w~~~----~ 116 (671)
T 2zpa_A 55 --------------DAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWLVLLLPVWEEWENQ----P 116 (671)
T ss_dssp -------------------------CCTTTCCBSSEEEECSSCCCHHHHHHHHTTBCTTCEEEEEESCGGGTTTS----C
T ss_pred --------------CCCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHEECCEEEEEECCCHHHHHHC----C
T ss_conf --------------5566318889987647755889998689989899999952420364899985875650105----8
Q ss_pred CCCC-CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 4334-354467765312289999996622796899958987001588765444478887755751557647888752036
Q 001672 165 DVHE-RFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQLCD 243 (1033)
Q Consensus 165 d~h~-r~rt~~~~~v~~rF~eRfi~sL~~~~~~lv~DdelnvlP~s~~~~~i~~~~~~~~~~~~~~~~~~l~~lk~~l~~ 243 (1033)
|+|+ ||....++.+++|||+||+++|.+|++|+++|++ +.+|++ +.+... +
T Consensus 117 d~~~~r~~~~~~~~~~~~F~~rf~~~l~~~~~~~~~~~~-~~~~~~-------~~~~~~--------------------~ 168 (671)
T 2zpa_A 117 DADSLRWSDCPDPIATPHFVQHLKRVLTADNEAILWRQN-QPFSLA-------HFTPRT--------------------D 168 (671)
T ss_dssp BGGGHHHHCCSSCBCCHHHHHHHHHHHTSSSSSEEEETT-SCCCCC-------CCCCCC--------------------C
T ss_pred CHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC-CCCCCC-------CCCCCC--------------------C
T ss_conf 805412455667766546999999999748980898189-875578-------877775--------------------4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
Q ss_conf 89987432368978899999999999750267837999908999888999999999999199819996699565999999
Q 001672 244 DFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFE 323 (1033)
Q Consensus 244 ~~p~~~L~~~~~T~DQ~~av~~~~~~i~~k~~r~~vvLTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~env~tlFe 323 (1033)
++ .+..|+|.||++|+.+|.+.. ..+.+|||+|||||||++|+++|.++ .+++||||+++|++++|+
T Consensus 169 ~~----~~~~~~T~dQ~~al~~~~~~~-----~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 169 WY----PATGAPQPEQQQLLKQLMTMP-----PGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp CC----CCCSSCCHHHHHHHHHHTTCC-----SEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHH
T ss_pred CC----CCCCCCCHHHHHHHHHHHHHH-----HCEEEEECCCCCCHHHHHHHHHHHHH----HCCEEECCCHHHHHHHHH
T ss_conf 45----777898999999999999753-----07289845899988999999999997----392897899899999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCC-CCCCCCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 9984000111122443100025899998662787543136417997189622-246896489995356999899998543
Q 001672 324 FVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH-EKLAQVELLVIDEAAAIPLPVVRSLLG 402 (1033)
Q Consensus 324 f~~kgl~aLgy~e~~dy~i~~s~~p~~~~aivri~~~~~hrqtIqyi~Pdd~-~~l~~adLLvIDEAAAIPlplL~~ll~ 402 (1033)
|+.+ +|+|++||++ ....++|+||||||||||+|+|++|++
T Consensus 236 ~~~~--------------------------------------~i~~~~Pd~~~~~~~~~dlliVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 236 FAGE--------------------------------------KFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp HHGG--------------------------------------GCCBCCHHHHHHSCCCCSEEEEETGGGSCHHHHHHHHT
T ss_pred HHHC--------------------------------------CEEEECCHHHHHCCCCCCEEEEECHHCCCHHHHHHHHH
T ss_conf 8617--------------------------------------73884754666174668889998542399999999985
Q ss_pred CC-EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 98-39997213488778863028999996420799977767875576403999334223489990799898732687778
Q 001672 403 PY-LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMN 481 (1033)
Q Consensus 403 ~y-~VflsSTI~GYEGTGRgfsLKl~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~gDPiE~WLn~lLlLDa~~ 481 (1033)
+| +|||||||||||||||||+|||+++|+ .+++++|+|||||++|||||+|||++||||+++
T Consensus 278 ~~~~v~~~tTv~GYEGtGrgf~lk~~~~L~-----------------~~~~~~L~~piR~a~~DplE~wl~~~llld~~~ 340 (671)
T 2zpa_A 278 RFPRTLLTTTVQGYEGTGRGFLLKFCARFP-----------------HLHRFELQQPIRWAQGCPLEKMVSEALVFDDEN 340 (671)
T ss_dssp TSSEEEEEEEBSSTTBBCHHHHHHHHHTST-----------------TCEEEECCSCSSSCTTCHHHHHHHHHHTCCCGG
T ss_pred HCCEEEEEECCCCCCCCCCCCCCCCHHHCC-----------------CCCEEECCCCEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 477589971377677757641401685669-----------------776798157666289997899998864767877
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 88888999999865236627200013475729999999999983436999669998532999728998457765678789
Q 001672 482 SIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLP 561 (1033)
Q Consensus 482 ~~~~~~~~p~p~~c~l~~Vnrd~Lfs~h~~sE~~Lq~i~~LlVsAHYkNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp 561 (1033)
+. .+| |+.|++++|||++||+ +|.+|+++|+|||+|||||+||||++|+|+|+|++||+.. + +
T Consensus 341 ~~----~~~-~~~~~~~~~~~~~l~~----~e~~L~~~~~Ll~~aHYr~sp~dL~~llD~p~~~l~va~~-----~---g 403 (671)
T 2zpa_A 341 FT----HTP-QGNIVISAFEQTLWQS----DPETPLKVYQLLSGAHYRTSPLDLRRMMDAPGQHFLQAAG-----E---N 403 (671)
T ss_dssp GG----SCC-CSCCEEEEEETTHHHH----CTHHHHHHHHHHHHHSSSBCHHHHHHHHHCTTEEEEEEEC-----S---S
T ss_pred CC----CCC-CCCCEEEEECHHHHHC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEE-----C---C
T ss_conf 78----899-8761599976898612----9999999999997455689989999972699855999998-----9---9
Q ss_pred CEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 92899996312799989899798349999988200889862127878987620899986386511489589999999999
Q 001672 562 DILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRY 641 (1033)
Q Consensus 562 ~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~ls~q~~d~~f~~lsg~RIVRIAvhP~~q~~GyGsraL~~L~~y 641 (1033)
+|+|+++++.||+++++++.+++.+++||+||||||++++|+++.+|++++++||+||||||+|||+|||+++|+.++++
T Consensus 404 ~IVG~i~v~~eG~l~~~~~~~~~~g~rRp~G~lip~~l~~~~~~~e~~~~~~~~I~~IAV~P~~rg~GiG~~LL~~~e~~ 483 (671)
T 2zpa_A 404 EIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAGALQY 483 (671)
T ss_dssp SEEEEEEEEEEECCCHHHHHHHHHTSCCCSSCHHHHHHHHHSSCTTGGGSEEEEEEEEEECTTSCSSSHHHHHHHHHHHT
T ss_pred EEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHCCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHH
T ss_conf 28999999976886888999987146677776104789876254112156736999999988882898999999999998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCC
Q ss_conf 71125544434444555775113136775310000025678888820000001287786528972488987899999799
Q 001672 642 YEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHK 721 (1033)
Q Consensus 642 ~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~~~~lDylGvSFG~T~~Ll~FW~k~g 721 (1033)
..+++|++++||.+..+++||+|+|
T Consensus 484 -------------------------------------------------------a~~~~~l~v~~~~n~~ai~FYek~G 508 (671)
T 2zpa_A 484 -------------------------------------------------------TQDLDYLSVSFGYTGELWRFWQRCG 508 (671)
T ss_dssp -------------------------------------------------------CCSCSEEEEEEECCHHHHHHHHHTT
T ss_pred -------------------------------------------------------HHCCCEEEEEECCCHHHHHHHHHCC
T ss_conf -------------------------------------------------------7108878998268899999999879
Q ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 82897651456788961589971388643123455400069999999999999655103589999999998528955677
Q 001672 722 FAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFK 801 (1033)
Q Consensus 722 F~pVylrq~~n~~TGEhS~imlk~L~~~~~~~~~~~~~~wl~~~~~dF~~rf~~lL~~~~fr~l~~~lal~lL~~~~~~~ 801 (1033)
|.++++++.+|..+|||+++|+|+|++ .+..+++.+.+.|++++..+. . ...+ ...
T Consensus 509 F~~v~ig~~~~~~~Ge~a~iM~k~L~~--------~g~~l~d~~~~~f~r~~~~l~-~--~~~~---------~~~---- 564 (671)
T 2zpa_A 509 FVLVRMGNHREASSGCYTAMALLPMSD--------AGKQLAEREHYRLRRDAQALA-Q--WNGE---------TLP---- 564 (671)
T ss_dssp CEEEEECSSCCTTTCCCEEEEEEECSH--------HHHHHHHHHHHHHHHHHHHHH-H--HHTS---------CCS----
T ss_pred CEEEEEEECCCCCCCCEEEEEEEEHHH--------HHHHHHHHHHHHHHHHHHHHH-H--CCCC---------CCC----
T ss_conf 989863102335799620544331215--------489999999999997656544-2--0423---------345----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 78977889821111237899999999999974176541332103999999984013788744898999999994099999
Q 001672 802 ELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDIS 881 (1033)
Q Consensus 802 ~~~~~~~~~~l~~~~~~~~ls~~Dl~rL~~ya~~~~dy~~i~Dllp~La~lyf~~~~~~~Ls~~q~~iLia~~LQ~ks~~ 881 (1033)
+. ...+..+++.||++|..|+.|..+|+.+. +.|.+++....+ +..+|+++++|+++|+
T Consensus 565 ----------~~-~~~~~~l~~~d~~~L~~fa~g~r~~e~~~---~al~rl~~~~~~-------~~~~L~~~~~Q~~~~~ 623 (671)
T 2zpa_A 565 ----------VD-PLNDAVLSDDDWLELAGFAFAHRPLLTSL---GCLLRLLQTSEL-------ALPALRGRLQKNASDA 623 (671)
T ss_dssp ----------SC-CCCCCCCCHHHHHHHHHHHHSCCCTTTTH---HHHHHHHHHCCS-------CCHHHHHHHHSCCCHH
T ss_pred ----------CC-CCCCCCCCHHHHHHHHHHHCCCCCHHHHH---HHHHHHHHHCCC-------HHHHHHHHHHCCCCHH
T ss_conf ----------56-66756899999999999973896889999---999999996665-------2799999997699999
Q ss_pred HHHHHHCCCH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999919988-8999999999999999997
Q 001672 882 CIQEQMKLEA-DRIFVLFRKVMTKLTDYLY 910 (1033)
Q Consensus 882 ~i~~el~l~~-~q~~a~l~k~i~kl~~~~~ 910 (1033)
+++.+++++| ++++..+|.+++.+.+.+.
T Consensus 624 ~~~~~l~~~g~k~~~~~lR~~~~~~l~~~~ 653 (671)
T 2zpa_A 624 QLCTTLKLSGRKMLLVRQREEAAQALFALN 653 (671)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999995887499999999999999998418
No 2
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=1.00 E-value=1 Score=72.14 Aligned_cols=182 Identities=20% Similarity=0.211 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 89788999999999997502678379999089998889999999999991998199966995659999999984000111
Q 001672 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1033)
Q Consensus 254 ~~T~DQ~~av~~~~~~i~~k~~r~~vvLTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~env~tlFef~~kgl~aLg 333 (1033)
.+|.+|.+|+..+...+..+ +.+++|+|+.|.|||.++...++.+...|+.+|+++||+..+++.+-+.+......+
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~--~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~- 101 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEK--KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTI- 101 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEH-
T ss_pred CCCHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHH-
T ss_conf 48999999999999987368--977999969999899999999999986499609996675789998876616541559-
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHC----CCEEEEE
Q ss_conf 122443100025899998662787543136417997189622246896489995356999899998543----9839997
Q 001672 334 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----PYLVFLS 409 (1033)
Q Consensus 334 y~e~~dy~i~~s~~p~~~~aivri~~~~~hrqtIqyi~Pdd~~~l~~adLLvIDEAAAIPlplL~~ll~----~y~Vfls 409 (1033)
|.-..+ ... .......|... +...+...+++|||||..++..++..|+. ...+++.
T Consensus 102 ---h~~~~~-------------~~~---~~~~~~~~~~~-~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~v 161 (459)
T 3upu_A 102 ---HSILKI-------------NPV---TYEENVLFEQK-EVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGI 161 (459)
T ss_dssp ---HHHHTE-------------EEE---ECSSCEEEEEC-SCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEE
T ss_pred ---HHHHCC-------------CCC---CCCCCCHHCCC-CCCCCCCCCEEEEECCHHCCHHHHHHHHHHCCCCCEEEEE
T ss_conf ---988546-------------855---45530020003-3333467889999880118999999999845689889998
Q ss_pred ECCCC--CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCC
Q ss_conf 21348--87788630289999964207999777678755764039993342234899907998987326
Q 001672 410 STVNG--YEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLC 476 (1033)
Q Consensus 410 STI~G--YEGTGRgfsLKl~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~gDPiE~WLn~lLl 476 (1033)
.-.+- |-+.|..+. .+..+-. ...+..++|++-.|. +.++=.+.+.+.-
T Consensus 162 GD~~Ql~~v~~g~~~~--~l~~~~~--------------~~~~~~~~L~~~~R~--~~~I~~~a~~lr~ 212 (459)
T 3upu_A 162 GDNKQIRPVDPGENTA--YISPFFT--------------HKDFYQCELTEVKRS--NAPIIDVATDVRN 212 (459)
T ss_dssp ECTTSCCCCCTTSCSC--CCCGGGT--------------CTTEEEEECCCCCCC--CCHHHHHHHHHHT
T ss_pred CCHHHCCCCCCCCCHH--HHHHHHH--------------CCCCCEEECEEEEEC--CCHHHHHHHHHHC
T ss_conf 8778768866886247--6779985--------------689728755046408--9579999999975
No 3
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=1.00 E-value=1 Score=70.84 Aligned_cols=169 Identities=24% Similarity=0.271 Sum_probs=112.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 36897889999999999975026783799990899988899999999999919981999669956599999999840001
Q 001672 252 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1033)
Q Consensus 252 ~~~~T~DQ~~av~~~~~~i~~k~~r~~vvLTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~env~tlFef~~kgl~a 331 (1033)
....+.+|..|+..+. . .+.++||++-|-|||..+.-.+..+...| .+|+++||+..+++.+-+-.. .++
T Consensus 187 ~~~L~~~Q~~Av~~~~----~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~~--~~a 256 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----G---HRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVTG--RTA 256 (574)
T ss_dssp TTTCCHHHHHHHHHHT----T---CSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHT--SCE
T ss_pred CCCCCHHHHHHHHHHH----H---CCEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHHC--CCH
T ss_conf 3799999999999997----6---88799995999988999999999998569-829996485899997676636--309
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCC---C-EEE
Q ss_conf 111224431000258999986627875431364179971896222468964899953569998999985439---8-399
Q 001672 332 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGP---Y-LVF 407 (1033)
Q Consensus 332 Lgy~e~~dy~i~~s~~p~~~~aivri~~~~~hrqtIqyi~Pdd~~~l~~adLLvIDEAAAIPlplL~~ll~~---y-~Vf 407 (1033)
.-......+ .. . .| ..+ ......+|++|||||.+++.+++..|+.. . .++
T Consensus 257 ~Tih~ll~~--------------------~~--~--~~-~~~-~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 257 STVHRLLGY--------------------GP--Q--GF-RHN-HLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEHHHHTTE--------------------ET--T--EE-SCS-SSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEE
T ss_pred HHHHHHHCC--------------------CC--C--HH-HHH-HCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 899998767--------------------92--0--32-320-1035658889971756778999999998376898899
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHC
Q ss_conf 97213488778863028999996420799977767875576403999334223489990799898732
Q 001672 408 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLL 475 (1033)
Q Consensus 408 lsSTI~GYEGTGRgfsLKl~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRya~gDPiE~WLn~lL 475 (1033)
+....+----.|.|-.++.+.. . +..+.|++..|.+.+.++-.+.+.+.
T Consensus 311 lvGD~~QL~~v~~g~~~~~l~~---~----------------~~~~~L~~~~R~~~~s~I~~~a~~i~ 359 (574)
T 3e1s_A 311 LVGDTDQLPPVDAGLPLLALAQ---A----------------APTIKLTQVYRQAAKNPIIQAAHGLL 359 (574)
T ss_dssp EEECTTSCCCSSSCCHHHHHHH---H----------------SCEEECCCCCHHHHTCHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCHHHHHHH---C----------------CCEEECCEEEECCCCCHHHHHHHHHH
T ss_conf 9954332687668837999996---3----------------98898520181899618999999986
No 4
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=1.00 E-value=1 Score=69.05 Aligned_cols=199 Identities=19% Similarity=0.223 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC--C-CCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 788999999999997502678379999089998889999999999991--9-9819996699565999999998400011
Q 001672 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--G-YSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1033)
Q Consensus 256 T~DQ~~av~~~~~~i~~k~~r~~vvLTA~RGRGKSAaLGlaiA~ai~~--g-~~nI~VTAPs~env~tlFef~~kgl~aL 332 (1033)
+..|..|+.... . ++.++++++-|-||+..+.-.++.+... + ..+|+++||+.+++..+-+-+......+
T Consensus 151 ~~~Q~~Ai~~~l----~---~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVAL----T---RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHH----T---BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHH----C---CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 999999999996----2---998999949999789999999999998630579759999187368999999999887507
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCC----CEEEE
Q ss_conf 11224431000258999986627875431364179971896222468964899953569998999985439----83999
Q 001672 333 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGP----YLVFL 408 (1033)
Q Consensus 333 gy~e~~dy~i~~s~~p~~~~aivri~~~~~hrqtIqyi~Pdd~~~l~~adLLvIDEAAAIPlplL~~ll~~----y~Vfl 408 (1033)
+........ -|.....+.+..........+.+.. ......|+||||||.++..+++..|+.. -.++|
T Consensus 224 ~l~~~~~~~-----~~~~~~Tih~ll~~~~~~~~~~~~~----~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 224 PLTDEQKKR-----IPEDASTLHRLLGAQPGSQRLRHHA----GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp SCCSCCCCS-----CSCCCBTTTSCC-----------CT----TSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHC-----CCHHHHHHHHHHCCCCCCHHHHHCC----CCCCCCCEEEEECHHHCCHHHHHHHHHHCCCCCEEEE
T ss_conf 877888732-----4055550575520589816777526----8987799999945250899999999984888988999
Q ss_pred EECCC--CCCCCCC-----------CHHHHHHHHHHHCCCCCCCCCCCCCCCCCE-----EEEEECCCCCCCCCCCHHHH
Q ss_conf 72134--8877886-----------302899999642079997776787557640-----39993342234899907998
Q 001672 409 SSTVN--GYEGTGR-----------SLSLKLLHQLEQQSHMPAKGVEGSAHGCLF-----KKIELSESIRYAPGDPIESW 470 (1033)
Q Consensus 409 sSTI~--GYEGTGR-----------gfsLKl~~~L~~~~~~~~~~~~~~~~~~~~-----~ei~L~ePIRya~gDPiE~W 470 (1033)
..-.+ .+=|.|. |++-.+.++|.+.......+ .....| ..+.|++..|...+.++-.+
T Consensus 295 vGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~l 370 (608)
T 1w36_D 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA----GTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 (608)
T ss_dssp EECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCC----CSTTTTHHHHTTEEECCCCCCSSCCTTHHHH
T ss_pred ECCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC----CCCCCCCCCCCCEEECCEEEEECCCCHHHHH
T ss_conf 766044588789807999998775366678899998731754343----2112355444627762254520784359999
Q ss_pred HHHH
Q ss_conf 9873
Q 001672 471 LNGL 474 (1033)
Q Consensus 471 Ln~l 474 (1033)
.+.+
T Consensus 371 a~~i 374 (608)
T 1w36_D 371 AAAI 374 (608)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
No 5
>3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family, structural genomics, PSI, protein structure initiative; 1.41A {Pseudomonas aeruginosa PAO1}
Probab=1.00 E-value=1 Score=64.02 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=82.0
Q ss_pred CCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 36999669998532999728998457765678789928999963127999898997983499999882008898621278
Q 001672 527 HYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDA 606 (1033)
Q Consensus 527 HYkNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~ls~q~~d~ 606 (1033)
.+.-++.++...++.+. ..|++.. + ++++|.+.+...
T Consensus 56 ~~~~~~~~~~~~~~~~~-~~~v~~~-----~---g~ivG~~~~~~~---------------------------------- 92 (182)
T 3kkw_A 56 IWPFSVAQLAAAIAERR-GSTVAVH-----D---GQVLGFANFYQW---------------------------------- 92 (182)
T ss_dssp CSSCCHHHHHHHHHHSE-EEEEEEE-----T---TEEEEEEEEEEE----------------------------------
T ss_pred CCCCCHHHHHHHHCCCC-CEEEEEE-----C---CEEEEEEEEEEE----------------------------------
T ss_conf 78889999998735886-3799986-----9---949999999860----------------------------------
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78987620899986386511489589999999999711255444344445557751131367753100000256788888
Q 001672 607 VFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLP 686 (1033)
Q Consensus 607 ~f~~lsg~RIVRIAvhP~~q~~GyGsraL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p 686 (1033)
..-..+.|..++|+|+||++|||+++++.+.++.....
T Consensus 93 --~~~~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~~---------------------------------------- 130 (182)
T 3kkw_A 93 --QHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQY---------------------------------------- 130 (182)
T ss_dssp --ETTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHHH----------------------------------------
T ss_pred --CCCCEEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHCC----------------------------------------
T ss_conf --68855999989999888089989999999999997457----------------------------------------
Q ss_pred CCCCCCCCCCCCCCC--EEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC--EEEEECCCC
Q ss_conf 200000012877865--2897248898789999979982897651456788961--589971388
Q 001672 687 PLLVHLRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH--TCMVLKPLH 747 (1033)
Q Consensus 687 ~ll~~l~e~~~~~lD--ylGvSFG~T~~Ll~FW~k~gF~pVylrq~~n~~TGEh--S~imlk~L~ 747 (1033)
++. ++.| +..+....+||+|+||.++....... ..|+. .++|.|.|+
T Consensus 131 ------------~~~~i~l~v-~~~N~~a~~~y~k~GF~~~~~~~~~~-~~g~~~~~~~m~k~L~ 181 (182)
T 3kkw_A 131 ------------KARLMKISC-FNANAAGLLLYTQLGYQPRAIAERHD-PDGRRVALIQMDKPLE 181 (182)
T ss_dssp ------------CCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred ------------CCCEEEEEE-ECCCHHHHHHHHHCCCEEECCCCCCC-CCCCEEEEEEEEECCC
T ss_conf ------------921999999-66999999999987990865256646-6883875799860368
No 6
>1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related N-acetyltransferase superfamily fold, NYSGXRC, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: d.108.1.1
Probab=1.00 E-value=1 Score=62.38 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHCCCCC---CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 2999999999998343699---9669998532999728998457765678789928999963127999898997983499
Q 001672 512 SELFLQRMMALYVSSHYKN---SPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGH 588 (1033)
Q Consensus 512 sE~~Lq~i~~LlVsAHYkN---sPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~ 588 (1033)
++.-+.+++.|+..+.... ++.+.....+ +....|++.. + ++++|.+.+...+
T Consensus 8 ~~~d~~~i~~l~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~---~~~vG~~~~~~~~--------------- 63 (140)
T 1q2y_A 8 NEEQLKDAFYVREEVFVKEQNVPAEEEIDELE-NESEHIVVYD-----G---EKPVGAGRWRMKD--------------- 63 (140)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCCCTTTTCCTTG-GGSEEEEEEE-----T---TEEEEEEEEEEET---------------
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CCCEEEEEEE-----C---CEEEEEEEEEECC---------------
T ss_conf 92779999999999842336998377776436-8837999998-----9---9689999999759---------------
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99988200889862127878987620899986386511489589999999999711255444344445557751131367
Q 001672 589 QPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEA 668 (1033)
Q Consensus 589 Rp~GdLIPw~ls~q~~d~~f~~lsg~RIVRIAvhP~~q~~GyGsraL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~ 668 (1033)
..+.|.+++|+|+||++|+|+++++.+.++......
T Consensus 64 -----------------------~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~g~--------------------- 99 (140)
T 1q2y_A 64 -----------------------GYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGA--------------------- 99 (140)
T ss_dssp -----------------------TEEEEEEEECCGGGTTTTHHHHHHHHHHHHHHHTTC---------------------
T ss_pred -----------------------CCEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHCCC---------------------
T ss_conf -----------------------809999999938884469899999999999997799---------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 75310000025678888820000001287786528972488987899999799828976514567889615899713
Q 001672 669 AKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKP 745 (1033)
Q Consensus 669 ~~~~~l~~~~i~~~~~~p~ll~~l~e~~~~~lDylGvSFG~T~~Ll~FW~k~gF~pVylrq~~n~~TGEhS~imlk~ 745 (1033)
..=++.+ +....+||+|+||.++.-+ .. ...|...++|.|+
T Consensus 100 ------------------------------~~i~l~~----n~~~~~~y~~~Gf~~~~~~-~~-~~~g~~~~~m~k~ 140 (140)
T 1q2y_A 100 ------------------------------SGFILNA----QTQAVPFYKKHGYRVLSEK-EF-LDAGIPHLQMMKD 140 (140)
T ss_dssp ------------------------------CSEEEEE----EGGGHHHHHHTTCEESCSC-CE-ESSSSEEEEEEEC
T ss_pred ------------------------------CEEEEEE----CHHHHHHHHHCCCEEECCC-CC-CCCCCCCEEEECC
T ss_conf ------------------------------4999990----3788889997798995223-53-3479632147529
No 7
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=1.00 E-value=1 Score=61.61 Aligned_cols=123 Identities=11% Similarity=0.109 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 69996699985329997289984577656787899289999631279998989979834999998820088986212787
Q 001672 528 YKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAV 607 (1033)
Q Consensus 528 YkNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~ls~q~~d~~ 607 (1033)
..-+...+...++.+...+|++.. ++ ++++|.+.+.....-.. ..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~v~~~-----~~--g~~vG~~~~~~~~~~~~----------------------------~~ 82 (164)
T 4e0a_A 38 PTLNPSRFQAAVQGEKSTVLVFVD-----ER--EKIGAYSVIHLVQTPLL----------------------------PT 82 (164)
T ss_dssp SSSCHHHHHHHHHCSSEEEEEEEE-----ET--TEEEEEEEEEEEEECCC----------------------------SS
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC-----CC--CCEEEEEEEEECCCCCC----------------------------CC
T ss_conf 077899999871599528999997-----99--95899999992378777----------------------------62
Q ss_pred CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89876208999863865114895899999999997112554443444455577511313677531000002567888882
Q 001672 608 FPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPP 687 (1033)
Q Consensus 608 f~~lsg~RIVRIAvhP~~q~~GyGsraL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ 687 (1033)
...-..+.|..|+|+|+||++|||+++++.+.+++...
T Consensus 83 ~~~~~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~~~~~------------------------------------------ 120 (164)
T 4e0a_A 83 MQQRKTVYISDLCVDETRRGGGIGRLIFEAIISYGKAH------------------------------------------ 120 (164)
T ss_dssp BCCEEEEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHT------------------------------------------
T ss_pred CCCCCEEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHC------------------------------------------
T ss_conf 13785799997999778705886999999999999976------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEE-ECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 000000128778652897-248898789999979982897651456788961
Q 001672 688 LLVHLRERQPEKLNYIGV-SFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 738 (1033)
Q Consensus 688 ll~~l~e~~~~~lDylGv-SFG~T~~Ll~FW~k~gF~pVylrq~~n~~TGEh 738 (1033)
+++.+.. .+.-+....+||+|+||.++......+...+.+
T Consensus 121 -----------g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~~~~~~~~ 161 (164)
T 4e0a_A 121 -----------QVDAIELDVYDFNDRAKAFYHSLGMRCQKQTMELPLLEHHH 161 (164)
T ss_dssp -----------TCSEEEEEEETTCHHHHHHHHHTTCEEEEEEEEEECC----
T ss_pred -----------CCCEEEEEEECCCHHHHHHHHHCCCEEECEECCCCCCCCCC
T ss_conf -----------99989999973898999999986998901063687643233
No 8
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=1.00 E-value=1 Score=61.53 Aligned_cols=115 Identities=13% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 99966999853299972899845776567878992899996312799989899798349999988200889862127878
Q 001672 529 KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVF 608 (1033)
Q Consensus 529 kNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~ls~q~~d~~f 608 (1033)
.-++.++....+ ++|+... + ++++|++.+.... +
T Consensus 335 ~~~~~~~~~~l~----~~~va~~-----~---g~iVG~~~~~~~~-------------------------------~--- 368 (456)
T 3d2m_A 335 HRSREYLENHIS----EFSILEH-----D---GNLYGCAALKTFA-------------------------------E--- 368 (456)
T ss_dssp CCCHHHHHHHGG----GEEEEEE-----T---TEEEEEEEEEECS-------------------------------S---
T ss_pred CCCHHHHHHHHH----HEEEEEE-----C---CEEEEEEEEEECC-------------------------------C---
T ss_conf 579999999874----2899998-----9---9799999999618-------------------------------9---
Q ss_pred CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 98762089998638651148958999999999971125544434444555775113136775310000025678888820
Q 001672 609 PSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPL 688 (1033)
Q Consensus 609 ~~lsg~RIVRIAvhP~~q~~GyGsraL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~l 688 (1033)
-..+.|-+++|+|+||++|||+++++.+.++....
T Consensus 369 --~~~~~I~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~------------------------------------------- 403 (456)
T 3d2m_A 369 --ADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGI------------------------------------------- 403 (456)
T ss_dssp --TTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred --CCEEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHC-------------------------------------------
T ss_conf --99799999999888859999999999999999985-------------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEE------ECCCCCCCCCEEEEECCCC
Q ss_conf 0000012877865289724889878999997998289765------1456788961589971388
Q 001672 689 LVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVS------QNANAVTGEHTCMVLKPLH 747 (1033)
Q Consensus 689 l~~l~e~~~~~lDylGvSFG~T~~Ll~FW~k~gF~pVylr------q~~n~~TGEhS~imlk~L~ 747 (1033)
++..+-+. +....+||+|+||.++... +......|..+.+|.|+|.
T Consensus 404 ----------g~~~i~l~---N~~a~~fY~k~GF~~~~~~~~p~~~~~~y~~~~r~~~v~~k~L~ 455 (456)
T 3d2m_A 404 ----------GISRLFAL---STNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLH 455 (456)
T ss_dssp ----------TCCEEEEE---ESSCHHHHHTTTCEEECGGGSCHHHHHHHHHHCCCCEEEEEECC
T ss_pred ----------CCCEEEEE---CHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCCEEEEEEECC
T ss_conf ----------99899997---68999999988999937034877777642666677089998767
No 9
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Probab=1.00 E-value=1 Score=60.91 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=73.0
Q ss_pred CHHHHHHHHCCCCCE----EEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 966999853299972----8998457765678789928999963127999898997983499999882008898621278
Q 001672 531 SPNDLQLMADAPAHH----LFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDA 606 (1033)
Q Consensus 531 sPnDLqlLlDaP~h~----lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~ls~q~~d~ 606 (1033)
++..+....+.+... +|++.. + ++++|.+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~~~---------------------------------- 107 (183)
T 3fix_A 70 SKEKLLNEIVRSQSNLDILFLGAFA-----D---STLIGFIELKII---------------------------------- 107 (183)
T ss_dssp CHHHHHHHHHHHHTTSSEEEEEEEE-----T---TEEEEEEEEEEE----------------------------------
T ss_pred CHHHHHHHHCCCCCCCCCEEEEEEE-----C---CEEEEEEEEEEC----------------------------------
T ss_conf 8699999870556566610899995-----9---989999998967----------------------------------
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78987620899986386511489589999999999711255444344445557751131367753100000256788888
Q 001672 607 VFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLP 686 (1033)
Q Consensus 607 ~f~~lsg~RIVRIAvhP~~q~~GyGsraL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p 686 (1033)
-..+.|..|+|+|+|||+|||+++++.+.+++....
T Consensus 108 ----~~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~g---------------------------------------- 143 (183)
T 3fix_A 108 ----ANKAELLRLYLKPEYTHKKIGKTLLLEAEKIMKKKG---------------------------------------- 143 (183)
T ss_dssp ----TTEEEEEEEEECGGGCCHHHHHHHHHHHHHHHHHHT----------------------------------------
T ss_pred ----CCCEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHCC----------------------------------------
T ss_conf ----995699999988888589879999999999999759----------------------------------------
Q ss_pred CCCCCCCCCCCCCCC--EEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 200000012877865--28972488987899999799828976514567889615899713
Q 001672 687 PLLVHLRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKP 745 (1033)
Q Consensus 687 ~ll~~l~e~~~~~lD--ylGvSFG~T~~Ll~FW~k~gF~pVylrq~~n~~TGEhS~imlk~ 745 (1033)
+. ++.| ..-+....+||+|+||.++.-. +...+|-|.
T Consensus 144 -------------~~~i~l~v-~~~n~~a~~~y~k~GF~~~~~~--------~~~~~m~k~ 182 (183)
T 3fix_A 144 -------------ILECRLYV-HRQNSVGFSFYYKNGFKVEDTD--------GSDFIMEKK 182 (183)
T ss_dssp -------------CCEEEEEE-ETTCHHHHHHHHHTTCEEEEEC--------SSEEEEEEE
T ss_pred -------------CCEEEEEE-ECCCHHHHHHHHHCCCEEECCC--------CCCHHHCCC
T ss_conf -------------96699998-0687889999998599991654--------533222056
No 10
>2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=59.93 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=60.6
Q ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 62089998638651148958999999999971125544434444555775113136775310000025678888820000
Q 001672 612 SGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVH 691 (1033)
Q Consensus 612 sg~RIVRIAvhP~~q~~GyGsraL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~ 691 (1033)
..+.|.+|+|+|+|||+|||+++++.+.++.....
T Consensus 86 ~~~~i~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~~--------------------------------------------- 120 (168)
T 2x7b_A 86 RKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDY--------------------------------------------- 120 (168)
T ss_dssp EEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred CEEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHHC---------------------------------------------
T ss_conf 47999999988888556799999999999998756---------------------------------------------
Q ss_pred CCCCCCCCCC--EEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf 0012877865--289724889878999997998289765145678896158997138
Q 001672 692 LRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 746 (1033)
Q Consensus 692 l~e~~~~~lD--ylGvSFG~T~~Ll~FW~k~gF~pVylrq~~n~~TGEhS~imlk~L 746 (1033)
+++ ++.| +--+....+||+|+||..+........ .|+..++|.+.|
T Consensus 121 -------g~~~i~l~v-~~~N~~A~~~Yek~GF~~~~~~~~~~~-~g~~~~~m~~~l 168 (168)
T 2x7b_A 121 -------NAEEIYLEV-RVSNYPAIALYEKLNFKKVKVLKGYYA-DGEDAYLMARPL 168 (168)
T ss_dssp -------CCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEETTCST-TSCCEEEEEEC-
T ss_pred -------CEEEEEEEE-EECCHHHHHHHHHCCCEEEEEEECCCC-CCCCEEEEEECC
T ss_conf -------916999999-908799999999779989987602247-998279999469
Done!