Query 001673
Match_columns 1033
No_of_seqs 235 out of 412
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057 Arp2/3 complex-interac 100.0 5E-297 1E-301 2488.8 60.4 962 5-1033 39-1017(1018)
2 COG0189 RimK Glutathione synth 99.9 4.5E-28 9.7E-33 266.5 12.2 246 13-288 35-287 (318)
3 PF08443 RimK: RimK-like ATP-g 99.9 1.8E-26 3.9E-31 234.8 5.7 172 94-295 1-174 (190)
4 PRK10446 ribosomal protein S6 99.9 3.7E-23 8E-28 223.6 15.8 247 8-288 2-263 (300)
5 TIGR00768 rimK_fam alpha-L-glu 99.9 1.5E-21 3.4E-26 204.5 14.9 248 9-289 2-255 (277)
6 PRK05246 glutathione synthetas 99.9 1E-21 2.2E-26 214.7 9.6 197 52-288 75-284 (316)
7 PLN02941 inositol-tetrakisphos 99.8 2.7E-20 5.9E-25 206.0 18.3 269 4-314 19-324 (328)
8 TIGR02144 LysX_arch Lysine bio 99.8 9.8E-21 2.1E-25 200.5 13.8 236 22-288 11-252 (280)
9 TIGR01380 glut_syn glutathione 99.8 3.6E-21 7.9E-26 210.6 10.0 197 52-288 74-283 (312)
10 PRK12458 glutathione synthetas 99.8 2.9E-20 6.2E-25 206.1 10.4 199 52-288 75-296 (338)
11 PF00328 His_Phos_2: Histidine 99.8 1.5E-18 3.2E-23 185.1 21.0 151 676-938 197-347 (347)
12 TIGR02291 rimK_rel_E_lig alpha 99.7 1.5E-16 3.2E-21 175.7 10.6 180 84-287 25-267 (317)
13 TIGR03103 trio_acet_GNAT GNAT- 99.7 8.5E-17 1.8E-21 188.7 8.1 177 84-291 285-526 (547)
14 PRK01372 ddl D-alanine--D-alan 99.6 1E-14 2.2E-19 157.0 16.6 245 6-288 4-268 (304)
15 TIGR02068 cya_phycin_syn cyano 99.6 2.4E-15 5.2E-20 184.6 8.6 173 86-288 203-444 (864)
16 PRK14016 cyanophycin synthetas 99.6 3.3E-15 7.1E-20 180.6 8.3 175 84-288 202-445 (727)
17 PRK02471 bifunctional glutamat 99.5 8.3E-14 1.8E-18 168.9 8.9 179 83-288 475-724 (752)
18 TIGR01205 D_ala_D_alaTIGR D-al 99.4 2.6E-12 5.7E-17 138.9 14.5 212 55-293 62-289 (315)
19 PRK14571 D-alanyl-alanine synt 99.4 8.1E-12 1.8E-16 135.4 15.0 232 20-289 18-264 (299)
20 TIGR01435 glu_cys_lig_rel glut 99.3 1.2E-12 2.7E-17 157.8 5.7 175 85-287 464-709 (737)
21 PF02955 GSH-S_ATP: Prokaryoti 99.3 4.4E-12 9.6E-17 130.0 6.7 123 147-290 34-162 (173)
22 KOG1057 Arp2/3 complex-interac 99.3 9E-13 2E-17 155.0 0.4 85 837-945 781-865 (1018)
23 PRK14569 D-alanyl-alanine synt 99.2 5.5E-11 1.2E-15 129.5 13.3 246 6-290 3-268 (296)
24 PRK12767 carbamoyl phosphate s 99.2 9E-11 1.9E-15 127.5 13.1 195 56-288 69-268 (326)
25 PRK01966 ddl D-alanyl-alanine 99.2 1.1E-10 2.3E-15 129.3 12.6 204 56-287 81-298 (333)
26 PRK06849 hypothetical protein; 99.2 1.3E-10 2.8E-15 130.4 12.4 193 57-287 77-273 (389)
27 cd07061 HP_HAP_like Histidine 99.2 2.9E-10 6.4E-15 119.1 13.8 49 495-547 28-78 (242)
28 PRK14572 D-alanyl-alanine synt 99.1 1.4E-10 3.1E-15 129.0 11.1 187 72-287 105-312 (347)
29 TIGR01142 purT phosphoribosylg 99.1 2.2E-10 4.8E-15 127.3 12.4 211 57-301 63-290 (380)
30 PRK14568 vanB D-alanine--D-lac 99.1 1.7E-09 3.7E-14 120.2 16.6 198 56-287 90-307 (343)
31 PRK14570 D-alanyl-alanine synt 99.1 1E-09 2.2E-14 123.7 14.3 203 56-287 87-313 (364)
32 PRK13790 phosphoribosylamine-- 99.0 1.6E-09 3.5E-14 122.3 10.8 196 67-288 36-248 (379)
33 PRK09288 purT phosphoribosylgl 98.9 4.4E-09 9.5E-14 117.6 10.4 198 56-287 75-282 (395)
34 PF13535 ATP-grasp_4: ATP-gras 98.9 1.2E-09 2.5E-14 107.8 5.0 161 93-288 1-177 (184)
35 PF05770 Ins134_P3_kin: Inosit 98.9 4.9E-09 1.1E-13 116.2 10.2 263 4-310 5-305 (307)
36 TIGR01161 purK phosphoribosyla 98.9 7E-09 1.5E-13 115.1 10.9 193 57-287 61-262 (352)
37 PRK00885 phosphoribosylamine-- 98.8 8.3E-09 1.8E-13 117.2 9.9 207 57-288 63-286 (420)
38 PRK07206 hypothetical protein; 98.8 8.4E-08 1.8E-12 108.3 14.5 207 57-287 71-285 (416)
39 PRK05294 carB carbamoyl phosph 98.7 1.8E-08 3.9E-13 127.2 9.2 199 56-288 629-839 (1066)
40 PRK02186 argininosuccinate lya 98.7 6.8E-08 1.5E-12 120.0 11.7 201 51-287 65-274 (887)
41 PRK07178 pyruvate carboxylase 98.7 4.7E-08 1E-12 113.4 9.6 203 56-288 73-290 (472)
42 PRK05586 biotin carboxylase; V 98.7 5.3E-08 1.2E-12 111.9 9.4 202 55-288 73-291 (447)
43 PRK06019 phosphoribosylaminoim 98.7 5.2E-08 1.1E-12 109.6 9.1 195 56-288 63-265 (372)
44 PF02655 ATP-grasp_3: ATP-gras 98.7 4E-08 8.7E-13 98.6 6.9 146 95-287 2-155 (161)
45 PRK08463 acetyl-CoA carboxylas 98.6 5.1E-08 1.1E-12 113.4 8.0 204 56-288 73-291 (478)
46 TIGR00877 purD phosphoribosyla 98.6 1E-07 2.2E-12 108.1 10.2 203 57-287 65-287 (423)
47 PRK08654 pyruvate carboxylase 98.6 4.8E-08 1E-12 114.5 7.6 204 56-288 74-290 (499)
48 TIGR01369 CPSaseII_lrg carbamo 98.6 8.9E-08 1.9E-12 120.9 10.5 198 56-288 629-839 (1050)
49 PRK08462 biotin carboxylase; V 98.6 1.1E-07 2.5E-12 108.8 9.9 197 56-287 76-292 (445)
50 PRK08591 acetyl-CoA carboxylas 98.6 6E-08 1.3E-12 111.0 7.0 206 56-288 74-291 (451)
51 PF14397 ATPgrasp_ST: Sugar-tr 98.5 1.6E-07 3.5E-12 103.0 7.8 187 86-289 16-257 (285)
52 PRK06395 phosphoribosylamine-- 98.5 2.2E-07 4.7E-12 107.3 8.9 204 57-287 66-290 (435)
53 PRK06111 acetyl-CoA carboxylas 98.5 6E-07 1.3E-11 102.7 11.3 203 57-288 75-291 (450)
54 TIGR00514 accC acetyl-CoA carb 98.5 3.5E-07 7.5E-12 105.2 9.2 198 56-287 74-290 (449)
55 PRK14573 bifunctional D-alanyl 98.4 4.4E-06 9.4E-11 103.1 17.9 207 56-287 526-753 (809)
56 PLN02257 phosphoribosylamine-- 98.4 9E-07 2E-11 102.4 11.2 194 67-287 71-287 (434)
57 TIGR01235 pyruv_carbox pyruvat 98.4 2.8E-07 6.2E-12 116.9 7.3 199 56-287 74-290 (1143)
58 PRK12815 carB carbamoyl phosph 98.4 8.4E-07 1.8E-11 112.5 10.2 195 56-287 630-836 (1068)
59 PRK12833 acetyl-CoA carboxylas 98.4 6E-07 1.3E-11 104.2 8.1 202 56-288 77-294 (467)
60 PLN02948 phosphoribosylaminoim 98.4 1.2E-06 2.7E-11 104.5 10.7 193 57-287 84-287 (577)
61 PF15632 ATPgrasp_Ter: ATP-gra 98.4 2E-06 4.3E-11 96.6 11.7 197 56-287 66-278 (329)
62 PRK05294 carB carbamoyl phosph 98.3 2E-06 4.3E-11 109.1 10.0 195 56-287 82-301 (1066)
63 PRK06524 biotin carboxylase-li 98.3 2.4E-06 5.2E-11 100.2 9.8 186 72-287 117-320 (493)
64 PRK12999 pyruvate carboxylase; 98.3 1.5E-06 3.2E-11 110.8 8.7 198 56-287 78-294 (1146)
65 PLN02735 carbamoyl-phosphate s 98.2 4.5E-06 9.7E-11 106.3 10.9 201 55-290 97-322 (1102)
66 PF07478 Dala_Dala_lig_C: D-al 98.2 1.9E-06 4.2E-11 90.3 5.7 159 103-290 1-178 (203)
67 COG1821 Predicted ATP-utilizin 98.2 8.2E-06 1.8E-10 88.5 10.4 166 56-287 73-253 (307)
68 PLN02735 carbamoyl-phosphate s 98.2 3.3E-06 7.2E-11 107.4 8.3 196 56-288 649-874 (1102)
69 COG1181 DdlA D-alanine-D-alani 98.1 1.3E-05 2.7E-10 89.8 11.3 189 71-287 77-283 (317)
70 TIGR01369 CPSaseII_lrg carbamo 98.1 9.8E-06 2.1E-10 102.8 10.6 196 56-287 81-299 (1050)
71 PRK13789 phosphoribosylamine-- 98.1 1.2E-05 2.6E-10 92.9 10.2 202 57-288 69-293 (426)
72 TIGR02712 urea_carbox urea car 97.9 2.7E-05 5.7E-10 100.1 9.7 203 56-288 73-290 (1201)
73 PRK12815 carB carbamoyl phosph 97.9 3.6E-05 7.9E-10 98.0 10.2 197 56-287 82-300 (1068)
74 PRK05784 phosphoribosylamine-- 97.8 6.5E-05 1.4E-09 88.5 10.1 203 57-287 70-307 (486)
75 PF14398 ATPgrasp_YheCD: YheC/ 97.6 0.00011 2.4E-09 80.0 7.7 189 79-289 6-232 (262)
76 PF02750 Synapsin_C: Synapsin, 97.6 0.00015 3.3E-09 76.4 7.3 168 86-291 1-179 (203)
77 PRK13278 purP 5-formaminoimida 97.2 0.0024 5.2E-08 73.0 12.2 178 79-289 107-311 (358)
78 COG2232 Predicted ATP-dependen 97.0 0.0023 5.1E-08 72.1 9.0 153 84-287 108-271 (389)
79 COG0439 AccC Biotin carboxylas 96.9 0.0018 3.9E-08 76.0 7.3 200 56-287 74-290 (449)
80 PF02786 CPSase_L_D2: Carbamoy 96.8 0.00021 4.6E-09 75.8 -1.6 161 96-288 1-178 (211)
81 PRK13277 5-formaminoimidazole- 96.6 0.03 6.6E-07 64.4 13.6 164 95-298 125-326 (366)
82 COG0458 CarB Carbamoylphosphat 96.0 0.03 6.4E-07 65.0 10.0 198 56-290 70-291 (400)
83 PF01071 GARS_A: Phosphoribosy 94.9 0.013 2.8E-07 62.2 1.9 164 96-287 2-186 (194)
84 PF14305 ATPgrasp_TupA: TupA-l 92.9 2.3 5.1E-05 46.4 14.5 175 89-286 13-214 (239)
85 COG0027 PurT Formate-dependent 91.8 0.67 1.4E-05 52.9 8.7 220 11-286 38-281 (394)
86 KOG3672 Histidine acid phospha 91.2 0.14 3E-06 59.2 2.8 62 495-563 178-243 (487)
87 KOG3895 Synaptic vesicle prote 89.3 0.19 4.1E-06 57.5 1.9 203 74-318 178-394 (488)
88 PF02222 ATP-grasp: ATP-grasp 89.0 0.15 3.3E-06 53.1 0.8 148 104-286 1-157 (172)
89 COG0026 PurK Phosphoribosylami 88.2 1.9 4.1E-05 50.2 8.8 168 72-281 76-257 (375)
90 PF14243 DUF4343: Domain of un 81.6 11 0.00023 37.9 9.6 81 193-290 33-117 (130)
91 PRK10172 phosphoanhydride phos 74.0 2.4 5.2E-05 50.4 3.0 54 492-547 77-135 (436)
92 PF03133 TTL: Tubulin-tyrosine 71.8 1.3 2.9E-05 48.6 0.2 54 146-217 67-126 (292)
93 COG0151 PurD Phosphoribosylami 69.4 12 0.00026 44.5 7.1 213 27-287 55-286 (428)
94 cd07040 HP Histidine phosphata 68.8 4.5 9.7E-05 39.0 3.1 25 519-543 47-71 (153)
95 KOG3720 Lysosomal & prostatic 67.3 5.9 0.00013 46.6 4.2 52 495-548 80-133 (411)
96 KOG3720 Lysosomal & prostatic 65.0 4.2 9.1E-05 47.9 2.4 33 908-946 317-349 (411)
97 PRK10172 phosphoanhydride phos 64.8 4.9 0.00011 47.9 2.9 56 859-936 322-379 (436)
98 PHA02117 glutathionylspermidin 60.8 17 0.00036 43.1 6.2 65 146-228 309-379 (397)
99 COG3919 Predicted ATP-grasp en 55.3 18 0.0004 41.5 5.1 153 97-287 115-285 (415)
100 PRK10173 glucose-1-phosphatase 53.0 10 0.00023 44.8 2.9 55 492-547 75-133 (413)
101 cd02639 R3H_RRM R3H domain of 52.5 16 0.00035 32.6 3.3 34 235-268 11-44 (60)
102 PF00300 His_Phos_1: Histidine 47.0 15 0.00034 35.4 2.7 21 522-542 50-70 (158)
103 PRK10507 bifunctional glutathi 44.6 44 0.00095 41.8 6.5 73 146-238 529-607 (619)
104 TIGR03162 ribazole_cobC alpha- 40.3 20 0.00043 36.2 2.3 21 522-542 46-66 (177)
105 cd07067 HP_PGM_like Histidine 39.6 21 0.00046 34.8 2.4 21 522-542 50-70 (153)
106 TIGR01016 sucCoAbeta succinyl- 36.1 16 0.00035 42.3 1.0 42 98-152 6-48 (386)
107 PF08442 ATP-grasp_2: ATP-gras 35.1 12 0.00025 40.4 -0.3 42 99-153 6-48 (202)
108 PRK03482 phosphoglycerate muta 32.9 32 0.00069 36.2 2.6 20 522-541 50-69 (215)
109 PRK13463 phosphatase PhoE; Pro 32.1 32 0.0007 36.1 2.4 20 522-541 51-70 (203)
110 PRK10173 glucose-1-phosphatase 31.6 37 0.00081 40.3 3.1 46 859-921 304-350 (413)
111 TIGR00640 acid_CoA_mut_C methy 30.3 31 0.00067 34.7 1.8 72 6-79 54-125 (132)
112 COG0406 phoE Broad specificity 30.1 36 0.00079 35.4 2.4 23 521-543 52-74 (208)
113 smart00855 PGAM Phosphoglycera 29.4 40 0.00088 33.3 2.5 21 522-542 51-71 (155)
114 PTZ00123 phosphoglycerate muta 27.6 43 0.00094 36.3 2.5 21 522-542 39-59 (236)
115 PRK15004 alpha-ribazole phosph 27.2 42 0.00091 35.0 2.2 20 522-541 49-68 (199)
116 TIGR03848 MSMEG_4193 probable 26.6 45 0.00098 34.8 2.3 21 522-542 49-69 (204)
117 COG1038 PycA Pyruvate carboxyl 26.5 1.3E+02 0.0029 38.9 6.5 180 82-293 107-302 (1149)
118 TIGR00249 sixA phosphohistidin 26.0 51 0.0011 33.4 2.6 21 522-542 47-67 (152)
119 PRK00696 sucC succinyl-CoA syn 25.8 24 0.00052 41.0 0.1 42 98-152 6-48 (388)
120 cd02071 MM_CoA_mut_B12_BD meth 24.4 40 0.00088 32.9 1.4 70 6-78 51-121 (122)
121 PF13549 ATP-grasp_5: ATP-gras 22.5 24 0.00051 38.6 -0.7 96 96-213 11-115 (222)
122 COG1181 DdlA D-alanine-D-alani 22.5 38 0.00083 38.9 1.0 72 144-228 87-160 (317)
123 PLN00124 succinyl-CoA ligase [ 22.3 28 0.00062 41.5 -0.1 22 98-119 33-54 (422)
124 KOG0238 3-Methylcrotonyl-CoA c 21.8 81 0.0018 38.8 3.4 184 82-293 97-292 (670)
125 PRK14046 malate--CoA ligase su 21.8 43 0.00093 39.4 1.2 21 99-119 7-27 (392)
126 PRK01295 phosphoglyceromutase; 21.6 68 0.0015 34.1 2.6 21 522-542 53-73 (206)
127 PRK14115 gpmA phosphoglyceromu 21.4 69 0.0015 35.2 2.6 21 522-542 51-71 (247)
128 PTZ00122 phosphoglycerate muta 20.5 79 0.0017 35.9 2.9 22 522-543 156-177 (299)
129 KOG1382 Multiple inositol poly 20.4 82 0.0018 38.2 3.1 30 522-551 162-191 (467)
No 1
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=100.00 E-value=5e-297 Score=2488.82 Aligned_cols=962 Identities=54% Similarity=0.839 Sum_probs=875.3
Q ss_pred CeeEEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcc
Q 001673 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFL 84 (1033)
Q Consensus 5 ~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~ 84 (1033)
++|+||||||++|++||||++||+||+.+++|++|||+|+|||+|||||||.|||||||||+||||+||++|++|||||+
T Consensus 39 r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnPFv 118 (1018)
T KOG1057|consen 39 RQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPFV 118 (1018)
T ss_pred cceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCCee
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEec
Q 001673 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (1033)
Q Consensus 85 lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp 164 (1033)
||||.||+++||||.||+||++.|||+|++++++|++|+++++++++++|+|+|||++|.||||||||+|||||||||||
T Consensus 119 iNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~EDHNIYIYYP 198 (1018)
T KOG1057|consen 119 INDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNIYIYYP 198 (1018)
T ss_pred eccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCcccccEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCce
Q 001673 165 SSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244 (1033)
Q Consensus 165 ~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~ 244 (1033)
+|+|||+++|||||||+||+|+|++ .+|+.|||||||||+|+|||||||||||+|||||+|||||+||+|+||+||||+
T Consensus 199 sSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKEv 277 (1018)
T KOG1057|consen 199 SSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKEV 277 (1018)
T ss_pred CCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeecCCCcee
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEeecCceecccchhhHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 001673 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIPP 324 (1033)
Q Consensus 245 r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNGwSFVK~n~kYYDdcA~iL~~~~l~~~~~~~~~~~p~ 324 (1033)
||||.||++||+||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++||+.+.+++..+.+|+
T Consensus 278 RYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~~~~iP~ 357 (1018)
T KOG1057|consen 278 RYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARALAPASQIPW 357 (1018)
T ss_pred eceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhccCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCcceEEEEEEEEEcCCCCcccceeEEechHHHHHHHHhhcCCCCccceeeccH
Q 001673 325 ILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSA 404 (1033)
Q Consensus 325 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vvaViRHgDRTPKQK~K~~~~~~~fi~L~~~~~~~~~~~e~kLk~~ 404 (1033)
++||..+++ .++.+++ ++++++|||||||||||||||||||||++|++++||+||++|+|++ ++|+|||+|
T Consensus 358 ~~p~~~~~~---~~~~v~~-----~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e~klk~~ 428 (1018)
T KOG1057|consen 358 SLPGIRNEK---VEPWVPT-----SSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEETKLKSA 428 (1018)
T ss_pred CCcccccCC---CCCceec-----CCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCcc-ccceeeCCH
Confidence 888877655 2344443 5679999999999999999999999999999999999999999876 789999999
Q ss_pred HhHHHHHHHHHhhcccCCCCCCCCCchhhhhhhhhhHHHHHHHhcCCCCCCcce-eeccchhhhccccccccccCCccee
Q 001673 405 VQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQCHLLLANLVSGQFIDF 483 (1033)
Q Consensus 405 ~qLq~vld~~r~~l~~~~~g~~~~~~~e~~e~~~Kl~ql~~vLe~~~~fsGinr-vQlKp~~~~~~~~~~~~~~~~~~~~ 483 (1033)
.|||+|||++|.++++.+ ++++++.|...||+||++||||||||||||| |||||+.|. ..++++++.++..++
T Consensus 429 ~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~vLE~~ghFsGinrKVQlk~l~~~-~~k~se~e~~r~~~l 502 (1018)
T KOG1057|consen 429 NQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNVLEMYGHFSGINRKVQLKPLKWV-YVKKSEGELEREPQL 502 (1018)
T ss_pred HHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHHHHhhCCCCCccceeeeeecccc-CCCCCccccccCcce
Confidence 999999999999998754 2234445668899999999999999999999 999999997 445555566666789
Q ss_pred EEEEeccCcch---------HHHHHHhh--c-CCCCcchhhhhhcccccceEeecCCchHHHHHHHHHhhhcccCCCCCc
Q 001673 484 LIEQFYQDNGV---------NEIAYWWG--S-HSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (1033)
Q Consensus 484 lLIlKW~~GGE---------e~LG~~fR--Y-p~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~legeLtP 551 (1033)
+||+|| ||| |+|||+|| | +|+|+|||||||||||||||||||||||||||||||||||+|||+|||
T Consensus 503 lliLKw--GGelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgelTp 580 (1018)
T KOG1057|consen 503 LLILKW--GGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTP 580 (1018)
T ss_pred eEEeee--CCEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhhccCCcH
Confidence 999999 999 99999999 5 578999999999999999999999999999999999999999999999
Q ss_pred ceeeeEecCCCCcCCCccchHHHHHHHHHHHHHHhcCCCccCCCCCCCCcCcccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 001673 552 ILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQV 631 (1033)
Q Consensus 552 ilv~~V~Kd~~lLD~s~~a~~~md~vK~kL~~lL~~~~~~~~~~~~~~~~w~~~~~~~~~nP~~~~~~~~~l~~~~~~~l 631 (1033)
||||||+||+.|||++++|+++|++||++||+||+.|.++ .++|+||.. + |+|++++.+++++|+.++..+
T Consensus 581 iLvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~-----~~e~~~~~~---~-P~~~~~l~~~ve~vk~~~k~~ 651 (1018)
T KOG1057|consen 581 ILVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREF-----TPEFDWPEL---M-PNPSEVLTQVVELVKNPVKVC 651 (1018)
T ss_pred HHHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcC-----CCccchhhc---C-CcHhHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999965 567899975 3 599999999999999998888
Q ss_pred HHHhhhcchhcccCCCCCCCCChhhhhhccCCccchhhhccCCCCCCCCHHHHHHHHHHHHHHhhcccCCcccCCCCCcc
Q 001673 632 RQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDV 711 (1033)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpdi 711 (1033)
++.+.. ..++ ..|+++.+|.+|+||+|+|+||++||+|||+|||+. .++|||||||||
T Consensus 652 ~e~~~~-------------~~~~--------~~i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~DiSKIpdi 709 (1018)
T KOG1057|consen 652 DENFAL-------------IEPL--------DHIDVERIQPRWPCHSETPDLMRERWEKLERDFYNK-RERFDISKIPDI 709 (1018)
T ss_pred HHhhhc-------------cccc--------cceeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhh-ccccCccccchH
Confidence 764421 1122 348899999999999999999999999999999975 499999999999
Q ss_pred hhccccccccccccccccHHHHHHHHHHhcceeccccccCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhccc
Q 001673 712 YDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSS 791 (1033)
Q Consensus 712 YD~iKYD~lHN~~l~l~~l~ELY~laK~LaD~V~PqEYGI~~~EKl~IG~~i~~pLL~KI~~DL~~~~ee~~~~~~~~~~ 791 (1033)
|||||||+|||++|.++++.|||.+||.|||+|+||||||+++|||+||..+|.|||+||+.||+++++ +..++.++.
T Consensus 710 YD~~KYD~~HN~~l~~~~~~ely~~ak~lad~vip~eYgi~~~~kl~I~~~~~~~ll~Ki~~dL~~~~e--~~~~et~~~ 787 (1018)
T KOG1057|consen 710 YDTIKYDLLHNRQLLLNGFDELYKYAKLLADIVIPQEYGINPQEKLKIGQGICTPLLGKILSDLVRTLE--LESAETKNR 787 (1018)
T ss_pred HhhhhHHhhcchhhhhccccHHHHHHHhhcccccccccCCCHHHhhhhhhhhcchhhhhhhHhhhcchh--hcchhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 456666666
Q ss_pred ccccccccccc--ccCCCCCCccccccccccCCCCccCCCCCCCCCcccccccccCcccCCCCCCccceeeEEEeecchh
Q 001673 792 QDQVSKSTKTE--KEDKDYPPKLFIKADDTRRSSTTSDISMDQDDDDDKETQYRLDPKYANVKTPERHVRTRLYFTSESH 869 (1033)
Q Consensus 792 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~RL~p~ya~V~SP~RhvRTrlYFTsESH 869 (1033)
.+++. .++.+ ..+-...++..+......+-+. +.-...++..++.+||.+.++...++.||++||+|||+|||
T Consensus 788 ~~p~~-~sp~~~~r~~lY~~sk~~v~sl~~~ryG~----~~~~~ln~~~~t~~~L~~~~~~d~~~e~~~~~rlyFtresh 862 (1018)
T KOG1057|consen 788 LNPVY-LSPRRHVRTRLYFTSKSHVHSLLLRRYGI----SDVEKLNDGLLTSIRLYEQILNDPTSERHFHTRLYFTRESH 862 (1018)
T ss_pred cCccc-cChhHHHHHHHhhhhHhhhhhhhhhhcCC----chhhhhcccchhceeechhhccCCcccccceeEEEeccchh
Confidence 55531 11111 1111111222222222222121 11122345678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeEEEEEecCCCCC-CCCCC
Q 001673 870 IHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGADL-SPLEN 948 (1033)
Q Consensus 870 IhSLLNvlr~g~l~~~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf~LYE~~~~~~~~~~rf~Iei~~SpG~~~-~pl~~ 948 (1033)
||||+||+++|.++.+..|.+++++++|+..++..+|||||+||||||||++..+ .++||+|||++||||+. +|||
T Consensus 863 i~~l~nv~~~~~~dEs~~g~~~~~~~~~l~r~~~~~eld~~~~i~fel~e~t~~S--~~Kr~~~~lt~s~g~~~~~plD- 939 (1018)
T KOG1057|consen 863 IYTLMNVIRYCNLDESDRGLPMKICRNALPRLCDLKELDYLSQIVFELFENTEAS--GPKRFSIRLTSSRGCDLSCPLD- 939 (1018)
T ss_pred hhhhhhHhhhccccccccCCccccCcccCcccccchhhhhHHHHHHHHhcccccc--cCcccceEEeecCCccccCchh-
Confidence 9999999999999998889999999999999999999999999999999999775 46999999999999995 5995
Q ss_pred CcccCCcCCCccccCC-CCccccccCCcccHHHHHHhhcccCCCCCCCCCCCCCCCcceeeccchhHHHHHhccccCCCc
Q 001673 949 DSEASSLHQEHTLPIM-GPERLQEVGSYLTLEKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAKSASVLERLVNLWPFHKN 1027 (1033)
Q Consensus 949 d~~~~~ld~~H~i~~~-pr~~L~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1033)
.+|+++|++||+ |+++|+ .+|+|++|+++++++++|.. +|+..+|.++++++++..+++||++++||+.++
T Consensus 940 ----~~l~~~~~ip~i~P~~~l~---~~Lsl~~v~~~lr~~~~~~~-~P~~~~~~~~~s~~s~~~~~~~r~~~~~~~~~~ 1011 (1018)
T KOG1057|consen 940 ----ENLDARHYIPIIGPLESLT---NHLSLEQVEKKLRDFATPVI-PPPRFTPVNFTSNSSKSAAKLERLVNLVPPLKN 1011 (1018)
T ss_pred ----hhhhccCcccccCcHHHHh---hccCHHHHHHHHHhhccccc-CCcccCcccccccchhHHHHHHHHhhccCCccC
Confidence 889999999999 999999 99999999999999999988 899999999999999999999999999999999
Q ss_pred cCcCCC
Q 001673 1028 ANSNGK 1033 (1033)
Q Consensus 1028 ~~~~~~ 1033 (1033)
+.++|+
T Consensus 1012 ~~~sg~ 1017 (1018)
T KOG1057|consen 1012 PASSGK 1017 (1018)
T ss_pred ccccCC
Confidence 878875
No 2
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.5e-28 Score=266.49 Aligned_cols=246 Identities=23% Similarity=0.279 Sum_probs=200.8
Q ss_pred ecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHHcCCcccCCcchh
Q 001673 13 VMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEPQ 91 (1033)
Q Consensus 13 AMd~Ka~SkPm~~IL~RL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~lNdl~~q 91 (1033)
.++.--++-+...+..+.....-.+++-+..+.+...+...-..+|++|.+-...+.. ..+++.++.++.+++|+..+.
T Consensus 35 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~i 114 (318)
T COG0189 35 ILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQSI 114 (318)
T ss_pred EEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHHH
Confidence 3333344555555555544444456777888888888888888999999999999888 788889999999999999999
Q ss_pred hHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChH
Q 001673 92 HLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGM 171 (1033)
Q Consensus 92 ~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~ 171 (1033)
...+|+..+++.|+++|||+|.|+++... . +.-..+. +.++.|+|.||++|. .|.|+
T Consensus 115 ~~~~nK~~~~~~l~~~~ipvP~T~i~~~~--~-------~~~~~~~---~~~g~pvVlKp~~Gs-----------~G~gV 171 (318)
T COG0189 115 RRCRNKLYTTQLLAKAGIPVPPTLITRDP--D-------EAAEFVA---EHLGFPVVLKPLDGS-----------GGRGV 171 (318)
T ss_pred HhhhhHHHHHHHHHhcCCCCCCEEEEcCH--H-------HHHHHHH---HhcCCCEEEeeCCCC-----------Cccce
Confidence 99999999999999999999999999862 0 1122222 223359999999999 78887
Q ss_pred HHHHhhhC-CCcccccCCccccccc--cceEEeeccCC-CCeeeEEEEECCceEE--EeeccCCCCCCeeeecCCCCcee
Q 001673 172 KELFRKVG-NRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEVR 245 (1033)
Q Consensus 172 ~~Lfrkig-n~sS~~~p~~~~~r~~--gsyIyEEFi~~-~G~DVKvytVGp~~vh--Ae~RKSPvvDG~vrrN~hgke~r 245 (1033)
- +.+.-. +-.+..+ ..... ..+|.||||++ ++.|++|+++|+.+++ |++|.++ .|.||.|.|+|+..
T Consensus 172 ~-~v~~~d~~l~~~~e----~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~~ 244 (318)
T COG0189 172 F-LVEDADPELLSLLE----TLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGRA 244 (318)
T ss_pred E-EecCCChhHHHHHH----HHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeeccccccc
Confidence 4 555544 3333333 33333 46999999999 7788899999999999 9999985 99999999999999
Q ss_pred eeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEeecC
Q 001673 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNG 288 (1033)
Q Consensus 246 ~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNG 288 (1033)
.++.||++++++|.++|+++|..+||+|++++++|.||||||.
T Consensus 245 e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~ 287 (318)
T COG0189 245 EPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNV 287 (318)
T ss_pred cccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeC
Confidence 9999999999999999999999999999999999999999996
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.93 E-value=1.8e-26 Score=234.85 Aligned_cols=172 Identities=29% Similarity=0.420 Sum_probs=98.3
Q ss_pred HhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCChHH
Q 001673 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMK 172 (1033)
Q Consensus 94 l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~ 172 (1033)
+.||..++++|+++|||+|.|.+++.. + +....+. ++ .+|+|.||+.|. .|.|+.
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~--~-------~~~~~~~~~~----~~p~ViKp~~g~-----------~G~gV~ 56 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSP--E-------EAKEFIEELG----GFPVVIKPLRGS-----------SGRGVF 56 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSH--H-------HHHHHHHHH------SSEEEE-SB------------------E
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCH--H-------HHHHHHHHhc----CCCEEEeeCCCC-----------CCCEEE
Confidence 368999999999999999999999762 1 2333343 32 379999999998 677773
Q ss_pred HHHhhhCCCcccccCCccccccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCC
Q 001673 173 ELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT 251 (1033)
Q Consensus 173 ~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~-~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt 251 (1033)
+++......+.++. ....+..+++|+||+. .|.|+||||||+++++|+.|.++ +|.||+|.+.|+...++.|+
T Consensus 57 -~i~~~~~~~~~l~~---~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l~ 130 (190)
T PF08443_consen 57 -LINSPDELESLLDA---FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDLP 130 (190)
T ss_dssp -EEESHCHHHHHHH--------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE----
T ss_pred -EecCHHHHHHHHHH---HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecCC
Confidence 55555444444441 1235788899999999 67999999999999999999997 99999999988888999999
Q ss_pred HHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEeecCceecccc
Q 001673 252 PNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 295 (1033)
Q Consensus 252 ~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNGwSFVK~n 295 (1033)
++.+++|.++++++|+++|||||+++++++||||||.+.-.++.
T Consensus 131 ~e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 131 EEIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHH
Confidence 99999999999999999999999999999999999987755544
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.90 E-value=3.7e-23 Score=223.59 Aligned_cols=247 Identities=20% Similarity=0.288 Sum_probs=182.9
Q ss_pred EEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCc-ceeec--CC-------CcccCCcCeeeccccCC--CchHHHHH
Q 001673 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVILE--DP-------IEKWPICDCLIAFYSSG--YPLEKAES 75 (1033)
Q Consensus 8 ~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiF~d-~vIL~--e~-------ve~wP~~D~lIsf~s~g--fpl~kai~ 75 (1033)
+|||-+.+....| -+.+++-+.+.| ++++++.- ++.++ .. ......+|++|++.... +.-....+
T Consensus 2 ~~~i~~~~~s~~s--~~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 78 (300)
T PRK10446 2 KIAILSRDGTLYS--CKRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALR 78 (300)
T ss_pred eEEEEecCCcchh--HHHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHH
Confidence 4677666655444 345555555545 66655543 22221 11 12345789999976543 22244577
Q ss_pred HHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccc
Q 001673 76 YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHG 154 (1033)
Q Consensus 76 y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~g 154 (1033)
.++..+|+++|+..+..+.+||..++++|+++|||+|++.++... . +..+.+. .+| .|+|+||++|
T Consensus 79 ~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~~~~~----~P~VvKP~~g 145 (300)
T PRK10446 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSP--D-------DTSDLIDMVGG----APLVVKLVEG 145 (300)
T ss_pred HHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCH--H-------HHHHHHHHhCC----CCEEEEECCC
Confidence 899999999999999999999999999999999999999987531 1 1112221 223 6999999999
Q ss_pred cCcceEEEeccCCCChHHHHHhhhCCCcccccCCcccc-ccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCC
Q 001673 155 DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVD 232 (1033)
Q Consensus 155 edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~-r~~gsyIyEEFi~~-~G~DVKvytVGp~~vhAe~RKSPvvD 232 (1033)
. .|.|+. +++........++ .. ..+..+|+||||+. .|.|+||+++|+++++|+.|.++ .
T Consensus 146 ~-----------~g~GV~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~ 207 (300)
T PRK10446 146 T-----------QGIGVV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--E 207 (300)
T ss_pred C-----------CcccEE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--C
Confidence 7 666664 3332222122222 11 23467999999987 79999999999999999999885 6
Q ss_pred CeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEeecC
Q 001673 233 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNG 288 (1033)
Q Consensus 233 G~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DVNG 288 (1033)
|.|+.|.+.++..++..|+++.+++|.++++++|..++|||++...+++||+|||.
T Consensus 208 ~~~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~ 263 (300)
T PRK10446 208 GDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNA 263 (300)
T ss_pred CchhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEEC
Confidence 89999999888889999999999999999999999999999999987899999993
No 5
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.86 E-value=1.5e-21 Score=204.47 Aligned_cols=248 Identities=21% Similarity=0.238 Sum_probs=178.0
Q ss_pred EEEeecCcccCChhHHHHHHHhhccCCeEEEEeCc---ceeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCccc
Q 001673 9 IGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGD---KVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLV 85 (1033)
Q Consensus 9 iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiF~d---~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~l 85 (1033)
|||++=.... =++.+.+.|.+.| +++.+|.- .+-++..-..||.+|+++.+...+..-..+.+.++..+..++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeee
Confidence 6777654332 4455555555545 66666653 233333223489999999987544444467788888998889
Q ss_pred CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEecc
Q 001673 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (1033)
Q Consensus 86 Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~ 165 (1033)
|+..+..+.+||+..+++|+++|||+|++..+... . +....+. .++.|+|+||..|.
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~--~-------~~~~~~~----~~~~p~vvKP~~g~---------- 134 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSP--E-------EALKLIE----EIGFPVVLKPVFGS---------- 134 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCH--H-------HHHHHHH----hcCCCEEEEECcCC----------
Confidence 99999999999999999999999999999988641 1 1112222 12359999999986
Q ss_pred CCCChHHHHHhhhCCCcccccCCcccc-ccccceEEeeccCC-CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCc
Q 001673 166 SAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (1033)
Q Consensus 166 ~~GgG~~~Lfrkign~sS~~~p~~~~~-r~~gsyIyEEFi~~-~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke 243 (1033)
.|.|+. +++........+. .+... .....||+||||+. .|.|++|+++|+.+++++.|.. .+.++.|.+.++
T Consensus 135 -~g~gv~-~i~~~~~l~~~~~-~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~~g~ 208 (277)
T TIGR00768 135 -WGRLVS-LARDKQAAETLLE-HFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRIT---SGHWRTNLARGG 208 (277)
T ss_pred -CCCceE-EEcCHHHHHHHHH-HHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcC---CCchhhhhhcCC
Confidence 344442 2221111111111 00001 11257999999998 5699999999999999998873 578999998877
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeC-CCeEEEeecCc
Q 001673 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGW 289 (1033)
Q Consensus 244 ~r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~-g~s~V~DVNGw 289 (1033)
...++.|+++.+++|.++++++|..+||||++.+. |++||+|||..
T Consensus 209 ~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~ 255 (277)
T TIGR00768 209 KAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPN 255 (277)
T ss_pred eeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCC
Confidence 78899999999999999999999999999999985 48999999963
No 6
>PRK05246 glutathione synthetase; Provisional
Probab=99.85 E-value=1e-21 Score=214.68 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=154.6
Q ss_pred cccCCcCeeeccccCCCch-----HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccc
Q 001673 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (1033)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~ 126 (1033)
-.||.+|+++.+-...|+. ...+++++.++..++|+..+.....||+..++++. ++|.|.+++.. .
T Consensus 75 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~--~--- 145 (316)
T PRK05246 75 LPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK--A--- 145 (316)
T ss_pred CccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH--H---
Confidence 4578899999886555553 45788999899999999999999999999999766 89999887641 1
Q ss_pred ccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhh-CCCcccccCCccccc--cccceEEeec
Q 001673 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV-GNRSSEFHPDVRRVR--REGSYIYEEF 203 (1033)
Q Consensus 127 ~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrki-gn~sS~~~p~~~~~r--~~gsyIyEEF 203 (1033)
...+.+.-.| |+|+||+.|. +|.|+. +.++- .+..+.++ ... ....||.|+|
T Consensus 146 ----~~~~~~~~~~-----~vVlKP~~G~-----------~G~gV~-~i~~~~~~~~~~~~----~l~~~~~~~~lvQ~~ 200 (316)
T PRK05246 146 ----EIRAFRAEHG-----DIILKPLDGM-----------GGAGIF-RVKADDPNLGSILE----TLTEHGREPVMAQRY 200 (316)
T ss_pred ----HHHHHHHHCC-----CEEEEECCCC-----------CccceE-EEeCCCccHHHHHH----HHHHccCCeEEEEec
Confidence 1223333223 8999999998 666664 22221 11111222 222 2468999999
Q ss_pred cCC-CCeeeEEEEECCceEE-EeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCeeeeEeeeeeC
Q 001673 204 MPT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 278 (1033)
Q Consensus 204 i~~-~G~DVKvytVGp~~vh-Ae~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~---~afgq~VCGfDLLRs~ 278 (1033)
|+. .+.|+||+++|++++| |+.|.++ .|.||.|.|.|+...++.||++|++||.+++ ++.|+..|||||+
T Consensus 201 I~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli--- 275 (316)
T PRK05246 201 LPEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI--- 275 (316)
T ss_pred cccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---
Confidence 998 6789999999999999 9999986 7999999999999999999999999999999 5779999999999
Q ss_pred CCeEEEeecC
Q 001673 279 GRSYVCDVNG 288 (1033)
Q Consensus 279 g~s~V~DVNG 288 (1033)
+.||+|||.
T Consensus 276 -~~~l~EvN~ 284 (316)
T PRK05246 276 -GDYLTEINV 284 (316)
T ss_pred -CCEEEEEeC
Confidence 458999993
No 7
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.84 E-value=2.7e-20 Score=205.99 Aligned_cols=269 Identities=20% Similarity=0.242 Sum_probs=186.8
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHH-HcCC
Q 001673 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT-LRKP 82 (1033)
Q Consensus 4 ~~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~-lr~p 82 (1033)
.+..+||-|--.||.+|==-..|+..+.+.| ++++--..+- |++.=-.+|++|-...+-.=-....+|.. -.+.
T Consensus 19 ~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~G-i~~v~Id~~~----pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 19 QKRFVVGYALTPKKVKSFLQPSLEALARSKG-IDLVAIDPSR----PLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred CCceEEEEEECHHHHHHHhhHHHHHHHHHCC-CeEEEecCCC----CccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 3578999888888888766666777777765 5554433332 44322247999988754321233445543 3457
Q ss_pred cccCCcchhhHHhhHHHHHHHHHhCC-------CCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeecccc
Q 001673 83 FLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (1033)
Q Consensus 83 ~~lNdl~~q~~l~DR~~vlqiL~~~g-------Ip~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~ge 155 (1033)
.+||.+.++..+.||...+++|++.| ||+|+++++...... ........ .++.|+|.||+-|.
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~a--------l~~~~~~~--~l~~P~V~KPl~g~ 163 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESS--------IPDAVALA--GLKFPLVAKPLVAD 163 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHH--------HHHHHHHh--cCCCCEEEeecccC
Confidence 89999999999999999999999999 999999999863100 00001122 24679999999992
Q ss_pred CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCee
Q 001673 156 DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVV 235 (1033)
Q Consensus 156 dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~v 235 (1033)
-++.|-|+..+|..- + ....+..|+.||||.-+|.|+||||||+.+ +|+.|+| .+.+
T Consensus 164 --------Gss~gh~m~lv~~~~----~-------L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v-~~~~R~S---~~n~ 220 (328)
T PLN02941 164 --------GSAKSHKMSLAYDQE----G-------LSKLEPPLVLQEFVNHGGVLFKVYVVGDYV-KCVRRFS---LPDV 220 (328)
T ss_pred --------CCccccceEEecCHH----H-------HHhcCCcEEEEEecCCCCEEEEEEEECCEE-EEEEecC---Cccc
Confidence 012444443222211 0 011344699999999999999999999995 9999998 5566
Q ss_pred e---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeC---CCeEEEee
Q 001673 236 M---RNPDGK----------------EV-------RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---GRSYVCDV 286 (1033)
Q Consensus 236 r---rN~hgk----------------e~-------r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~---g~s~V~DV 286 (1033)
+ .|++.| +. ..+...+++=+++|.++++++|+.++||||+|.. ++.+|+||
T Consensus 221 ~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidV 300 (328)
T PLN02941 221 SEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDI 300 (328)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEe
Confidence 6 677755 22 3344455678899999999999999999999996 47899999
Q ss_pred cCceecccchhhHHHHHHHHHHHHHHhh
Q 001673 287 NGWSFVKNSYKYYDDAACVLRKMFLEAK 314 (1033)
Q Consensus 287 NGwSFVK~n~kYYDdcA~iL~~~~l~~~ 314 (1033)
|++==-|+-..|+. +|-++|++.+
T Consensus 301 N~fP~~k~~p~~~~----~l~~~~~~~~ 324 (328)
T PLN02941 301 NYFPGYAKMPGYET----VLTDFLLSLV 324 (328)
T ss_pred cCCCccccCCchHH----HHHHHHHHHH
Confidence 97766677788884 4445544443
No 8
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.84 E-value=9.8e-21 Score=200.48 Aligned_cols=236 Identities=19% Similarity=0.198 Sum_probs=170.2
Q ss_pred hHHHHHHHhhccCCeEEE-EeCcc--eeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHH
Q 001673 22 PMGQILDRLQAFGEFEVI-HFGDK--VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRR 98 (1033)
Q Consensus 22 Pm~~IL~RL~~~~~fevi-iF~d~--vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~ 98 (1033)
.++.+..-|.+.| +++. +.-++ +-++++...|..||++|.+-..+...-.....++..+..++|+.......+||.
T Consensus 11 ~~~~l~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n~~~~~~~~~dK~ 89 (280)
T TIGR02144 11 DEKMLIEELEKLG-LPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVINSSHVIEACGDKI 89 (280)
T ss_pred HHHHHHHHHHHcC-CceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEECcHHHHHHHhhHH
Confidence 3556666666655 4432 33333 344666679999999998743333223445667888988899999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhh
Q 001673 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178 (1033)
Q Consensus 99 ~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrki 178 (1033)
..+++|+++|||+|.+..+... . +..+.+. .++.|+|+||..|. .|.|+. ++...
T Consensus 90 ~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~----~~~~P~vvKP~~g~-----------~g~gv~-~v~~~ 144 (280)
T TIGR02144 90 FTYLKLAKAGVPTPRTYLAFDR--E-------AALKLAE----ALGYPVVLKPVIGS-----------WGRLVA-LIRDK 144 (280)
T ss_pred HHHHHHHHCCcCCCCeEeeCCH--H-------HHHHHHH----HcCCCEEEEECcCC-----------CcCCEE-EECCH
Confidence 9999999999999999988641 1 1111111 13469999999986 344442 22111
Q ss_pred CCCcccccCCcccc--ccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHH
Q 001673 179 GNRSSEFHPDVRRV--RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ 256 (1033)
Q Consensus 179 gn~sS~~~p~~~~~--r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~ 256 (1033)
......+.. .... ..+..+|+||||+..|.|++++++|+.++|++.|.+ +.++.|.+.++...++.|+++.++
T Consensus 145 ~~l~~~~~~-~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~~~ 219 (280)
T TIGR02144 145 DELESLLEH-KEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEVEE 219 (280)
T ss_pred HHHHHHHHH-HHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHHHH
Confidence 000000000 0011 124579999999977899999999999999999876 678889887777889999999999
Q ss_pred HHHHHHHHhCCeeeeEeeeeeC-CCeEEEeecC
Q 001673 257 MAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNG 288 (1033)
Q Consensus 257 iA~k~~~afgq~VCGfDLLRs~-g~s~V~DVNG 288 (1033)
+|.++++++|..++|||++... |++||+|||.
T Consensus 220 ~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~ 252 (280)
T TIGR02144 220 LAVKAAEAVGGGVVAIDIFESKERGLLVNEVNH 252 (280)
T ss_pred HHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeC
Confidence 9999999999999999999984 5899999995
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.84 E-value=3.6e-21 Score=210.57 Aligned_cols=197 Identities=16% Similarity=0.194 Sum_probs=153.4
Q ss_pred cccCCcCeeeccccCCCch-----HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccc
Q 001673 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (1033)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl-----~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~ 126 (1033)
-.|+.+|++|.+-...|.. ...+++++..+..++|+........||...++++. ++|.|++.+.. .
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~--~--- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDK--A--- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCH--H---
Confidence 4588999999997665553 46889999999999999999999999999888763 89999987641 1
Q ss_pred ccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhh-hCCCcccccCCccccc--cccceEEeec
Q 001673 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK-VGNRSSEFHPDVRRVR--REGSYIYEEF 203 (1033)
Q Consensus 127 ~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrk-ign~sS~~~p~~~~~r--~~gsyIyEEF 203 (1033)
+..+.+.-.| |+|+||+.|. .|.|+.+ ++. -.+.++..+ ... ....|++|+|
T Consensus 145 ----~~~~~~~~~g-----~vVvKPl~G~-----------~G~gv~~-v~~~~~~~~~~~~----~~~~~~~~~~~vQ~y 199 (312)
T TIGR01380 145 ----EIRAFLAEHG-----DIVLKPLDGM-----------GGEGIFR-LDPGDPNFNSILE----TMTQRGREPVMAQRY 199 (312)
T ss_pred ----HHHHHHHHcC-----CEEEEECCCC-----------CCceEEE-EcCCCccHHHHHH----HHHhccCCcEEEEec
Confidence 1222232222 8999999997 6666642 221 111111111 111 2357999999
Q ss_pred cCC-CCeeeEEEEECCceE-EEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCeeeeEeeeeeC
Q 001673 204 MPT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 278 (1033)
Q Consensus 204 i~~-~G~DVKvytVGp~~v-hAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~---~afgq~VCGfDLLRs~ 278 (1033)
|++ .+.|+||++||++++ ||+.|.++ +|.||.|.+.|+...++.||++|+++|.+++ +++|+..||||||
T Consensus 200 I~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii--- 274 (312)
T TIGR01380 200 LPEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI--- 274 (312)
T ss_pred cccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe---
Confidence 998 778999999999965 69999985 8999999998899999999999999999998 7789999999999
Q ss_pred CCeEEEeecC
Q 001673 279 GRSYVCDVNG 288 (1033)
Q Consensus 279 g~s~V~DVNG 288 (1033)
++||+|||.
T Consensus 275 -g~~v~EvN~ 283 (312)
T TIGR01380 275 -GGYLTEVNV 283 (312)
T ss_pred -CCEEEEEec
Confidence 479999995
No 10
>PRK12458 glutathione synthetase; Provisional
Probab=99.82 E-value=2.9e-20 Score=206.08 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=151.3
Q ss_pred cccCCcCeeeccccCCCch--HHHHHH--------HHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccC
Q 001673 52 EKWPICDCLIAFYSSGYPL--EKAESY--------ATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREV 121 (1033)
Q Consensus 52 e~wP~~D~lIsf~s~gfpl--~kai~y--------~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~ 121 (1033)
-.|..+|+++.+-...|.. ...+.+ ++..+.+++|+........||+..+++++ +++|.|++.+..
T Consensus 75 ~~l~~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 75 LPLAGFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK- 150 (338)
T ss_pred CchhhCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH-
Confidence 3578899999887665544 223333 36778999999999999999998876544 789999987541
Q ss_pred CCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhC--CCcccccCCccccccccce
Q 001673 122 PYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSY 198 (1033)
Q Consensus 122 p~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkig--n~sS~~~p~~~~~r~~gsy 198 (1033)
. +..+.+. .+| .|+|+||++|. .|.|+. +.+.-. |..+.++ .....+.+
T Consensus 151 -~-------~~~~~~~~~~~----~pvVvKPl~G~-----------gG~gV~-~v~~~~~~~~~~ile----~~~~~~~~ 202 (338)
T PRK12458 151 -E-------YIREFLEESPG----DKMILKPLQGS-----------GGQGVF-LIEKSAQSNLNQILE----FYSGDGYV 202 (338)
T ss_pred -H-------HHHHHHHHcCC----CeEEEEECCCC-----------CccCeE-EEecCChhhHHHHHH----HHhhCCCE
Confidence 1 1222232 333 36999999997 666664 222111 1122222 22236689
Q ss_pred EEeeccCC-CCeeeEEEEECCceE------EEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---CCe
Q 001673 199 IYEEFMPT-GGTDVKVYTVGPEYA------HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQA 268 (1033)
Q Consensus 199 IyEEFi~~-~G~DVKvytVGp~~v------hAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~af---gq~ 268 (1033)
|+||||++ .+-|+||++||++++ ||+.|.++ .|++|.|.+-|+...++.||++++++|.+++.++ |+.
T Consensus 203 ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 203 IAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred EEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCe
Confidence 99999998 778999999999999 99999885 7999999998888899999999999999999988 999
Q ss_pred eeeEeeeeeCCCeEEEeecC
Q 001673 269 VCGFDLLRCEGRSYVCDVNG 288 (1033)
Q Consensus 269 VCGfDLLRs~g~s~V~DVNG 288 (1033)
+||+|++ +.+|+|||-
T Consensus 281 ~~gVDli----~~~l~EIN~ 296 (338)
T PRK12458 281 FVGLDIV----GDKLVEVNV 296 (338)
T ss_pred EEeEEEE----CCEEEEEeC
Confidence 9999999 568999994
No 11
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.81 E-value=1.5e-18 Score=185.10 Aligned_cols=151 Identities=22% Similarity=0.359 Sum_probs=105.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCcccCCCCCcchhccccccccccccccccHHHHHHHHHHhcceeccccccCCchh
Q 001673 676 CGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQ 755 (1033)
Q Consensus 676 c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpdiYD~iKYD~lHN~~l~l~~l~ELY~laK~LaD~V~PqEYGI~~~E 755 (1033)
|.|+....+...|..++..+|.. ...+.+++|++|+.+++|++++..+ ..+.++|.. ||.+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~ 260 (347)
T PF00328_consen 197 IPGEDNLTFFDVWAIFDDCLYEQ--IYNDGSPFPEWFTDMKEDALQLEYL--EDLKEYYQY------------YGYSDEI 260 (347)
T ss_dssp STTCEECTHHHHHHHHHHHHHHH--HHHTT-GGGGGSCHTSHHHHHHHHH--HHHHHHHHH------------CSTTHHH
T ss_pred cCccccccchhhhhhhhhhhhhh--ccCCCCCCchhhcccchHHHHHHhh--hhHHHHhhc------------ccCCchH
Confidence 56666667899999999999865 2689999999999999999998773 334555655 8888874
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhccccccccccccccccCCCCCCccccccccccCCCCccCCCCCCCCC
Q 001673 756 KLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSSTTSDISMDQDDD 835 (1033)
Q Consensus 756 Kl~IG~~i~~pLL~KI~~DL~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1033)
+...+.||++.|+..+...-.. .
T Consensus 261 ----~~~~~~~ll~~ll~~l~~~~~~-----------------------------------~------------------ 283 (347)
T PF00328_consen 261 ----ARLQGGPLLNELLRRLKQAING-----------------------------------N------------------ 283 (347)
T ss_dssp ----HHHHHHHHHHHHHHHHHHCHSS-----------------------------------T------------------
T ss_pred ----HHHHHhHHHHHHHHHHhhcccc-----------------------------------c------------------
Confidence 5566678888888877753100 0
Q ss_pred cccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceE
Q 001673 836 DDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVL 915 (1033)
Q Consensus 836 ~~~E~~~RL~p~ya~V~SP~RhvRTrlYFTsESHIhSLLNvlr~g~l~~~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf 915 (1033)
++.+..|-.+||+..+.|..||.+| |+.....+. .. .--.|-|+|+|
T Consensus 284 -----------------~~~~~~k~~~~s~HD~tl~~ll~~L---gl~~~~~~~-----------~~--~~pp~as~l~f 330 (347)
T PF00328_consen 284 -----------------SPGRPPKLVLYSGHDTTLMPLLSAL---GLDNYSPPY-----------QS--YWPPYASNLVF 330 (347)
T ss_dssp -----------------CSCSSCSEEEEEE-HHHHHHHHHHT---TCTTTSTTT-----------HS--SCSSTT-EEEE
T ss_pred -----------------cccccceEEEEecCHHHHHHHHHHh---CCCccCccc-----------cC--CCCCccceeEE
Confidence 0122367899999999999999999 455432110 01 33468899999
Q ss_pred EEEecCCCCCCCCCeeEEEEEec
Q 001673 916 RMFENTAVALEDPKRFRIELTFS 938 (1033)
Q Consensus 916 ~LYE~~~~~~~~~~rf~Iei~~S 938 (1033)
|||++ +.+.|.||+.+.
T Consensus 331 El~~~------~~~~~~Vr~~yN 347 (347)
T PF00328_consen 331 ELYRD------SGKNYYVRVLYN 347 (347)
T ss_dssp EEEEE------TTTEEEEEEEET
T ss_pred EEEEe------CCCcEEEEEEEC
Confidence 99998 223499999874
No 12
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.67 E-value=1.5e-16 Score=175.74 Aligned_cols=180 Identities=17% Similarity=0.129 Sum_probs=130.9
Q ss_pred ccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEE
Q 001673 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 162 (1033)
Q Consensus 84 ~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~gedHni~IY 162 (1033)
..||=+.-.++.||..+.++|.++|||+|.|..+.... ...++... +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~--------~~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQ--------AEVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCch--------hhHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 35777788899999999999999999999988766421 01122222 333 247999999999
Q ss_pred eccCCCChHHHHHhhhCCCc------cc-----ccCC----cc-ccccc--cceEEeeccCC-C----------CeeeEE
Q 001673 163 YPSSAGGGMKELFRKVGNRS------SE-----FHPD----VR-RVRRE--GSYIYEEFMPT-G----------GTDVKV 213 (1033)
Q Consensus 163 yp~~~GgG~~~Lfrkign~s------S~-----~~p~----~~-~~r~~--gsyIyEEFi~~-~----------G~DVKv 213 (1033)
+|.|+. +.+...+.. .. ++.. +. ..... ..+.|+||+.. . +.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 999985 554432211 01 1100 00 01122 22344466433 2 379999
Q ss_pred EEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 001673 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 261 (1033)
Q Consensus 214 ytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt--------------------------------~~Ek~iA~k~ 261 (1033)
+|||++.++||.|.+. -.|.++.|.|.|++..++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999762 357899999999999999986 5667999999
Q ss_pred HHHhCCeeeeEeeeee-CCCeEEEeec
Q 001673 262 CIAFRQAVCGFDLLRC-EGRSYVCDVN 287 (1033)
Q Consensus 262 ~~afgq~VCGfDLLRs-~g~s~V~DVN 287 (1033)
++++|+.++|+|++.+ +++++|+|||
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN 267 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELN 267 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeC
Confidence 9999999999999986 7899999999
No 13
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.66 E-value=8.5e-17 Score=188.71 Aligned_cols=177 Identities=24% Similarity=0.378 Sum_probs=133.0
Q ss_pred ccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEe
Q 001673 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (1033)
Q Consensus 84 ~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYy 163 (1033)
.+|+..+..+..||..+.++|+++|||+|.+.+++.. . +..+.+.-.| |+|+||++|.
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~--~-------~~~~~~~~~G-----~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG--E-------AVEAFLAEHG-----AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH--H-------HHHHHHHHhC-----CEEEEECCCC--------
Confidence 6678888999999999999999999999999998741 1 1112222123 7999999998
Q ss_pred ccCCCChHHHHHhhhCCCcccccCCccc-cccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCC--CCe------
Q 001673 164 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (1033)
Q Consensus 164 p~~~GgG~~~Lfrkign~sS~~~p~~~~-~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvv--DG~------ 234 (1033)
+|.|+. + .+.+... +..-+.. .+....+|.|+|++ |.|+||+|||+++++|+.|..|-+ ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~e-L~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDD-LEAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHH-HHHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 777774 3 1222211 1110111 23456899999995 999999999999999999998742 332
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 001673 235 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 264 (1033)
Q Consensus 235 ------------------------------------------------vrrN~hgke~r~~v--~Lt~~Ek~iA~k~~~a 264 (1033)
.+.|+|-|+....| .+.|+.+++|.++|++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 15788877777677 7999999999999999
Q ss_pred hCCeeeeEeeeeeC-CCe--EEEeec---Ccee
Q 001673 265 FRQAVCGFDLLRCE-GRS--YVCDVN---GWSF 291 (1033)
Q Consensus 265 fgq~VCGfDLLRs~-g~s--~V~DVN---GwSF 291 (1033)
+|+.||||||+... .+| +||||| |+.-
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~ 526 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGLAN 526 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccccc
Confidence 99999999999874 556 999999 6553
No 14
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.61 E-value=1e-14 Score=157.00 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=164.5
Q ss_pred eeEEEEee------cCcccCChhHHHHHHHhhccCCeEEEEeCc-ceeecCCCcccCCcCeeeccccCCCchH-HHHHHH
Q 001673 6 KITIGVCV------MEKKVFSAPMGQILDRLQAFGEFEVIHFGD-KVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYA 77 (1033)
Q Consensus 6 ~~~iGVCA------Md~Ka~SkPm~~IL~RL~~~~~feviiF~d-~vIL~e~ve~wP~~D~lIsf~s~gfpl~-kai~y~ 77 (1033)
+++|+||+ -+....|. +.|++=|.+.| +++++... +-+++ +-.+..+|+++..+...+..+ .+-..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~--~~i~~al~~~g-~~v~~i~~~~~~~~--~~~~~~~D~v~~~~~g~~~~~~~~~~~l 78 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSG--AAVLAALREAG-YDAHPIDPGEDIAA--QLKELGFDRVFNALHGRGGEDGTIQGLL 78 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhH--HHHHHHHHHCC-CEEEEEecCcchHH--HhccCCCCEEEEecCCCCCCccHHHHHH
Confidence 45788888 45544443 66777776644 66666532 22222 122457899998876545442 344566
Q ss_pred HHcCCcccC-CcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccC
Q 001673 78 TLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (1033)
Q Consensus 78 ~lr~p~~lN-dl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~ged 156 (1033)
+..+...+| +.....+..||....++|+++|||+|++..+.... +....+. .++.|+|+||..|.
T Consensus 79 e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~---------~~~~~~~----~~~~P~ivKP~~g~- 144 (304)
T PRK01372 79 ELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREE---------DLLAAID----KLGLPLVVKPAREG- 144 (304)
T ss_pred HHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcc---------hHHHHHh----hcCCCEEEeeCCCC-
Confidence 777766554 57888999999999999999999999999987521 1111111 23469999999985
Q ss_pred cceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCC--
Q 001673 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG-- 233 (1033)
Q Consensus 157 Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG-- 233 (1033)
.|.|+. ++.|.....+ -+. .......+|+||||+ |.++.|.++|+.+.++..+..+ .|
T Consensus 145 ----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~--~~~~ 205 (304)
T PRK01372 145 ----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA--GEFY 205 (304)
T ss_pred ----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec--CCEE
Confidence 344442 1222111100 000 012256799999997 8999999999999888877763 44
Q ss_pred eeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhCCe-eeeEeeeeeC-CCeEEEeecC
Q 001673 234 VVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNG 288 (1033)
Q Consensus 234 ~vrrN~hgke~r~--~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs~-g~s~V~DVNG 288 (1033)
.++.+.+.++..+ |..+++++ +++|.+++++||.. +|+||++..+ |++||+|||.
T Consensus 206 ~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~ 268 (304)
T PRK01372 206 DYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNT 268 (304)
T ss_pred eeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecC
Confidence 4566776555443 34577654 57899999999985 8999999997 7799999994
No 15
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.57 E-value=2.4e-15 Score=184.60 Aligned_cols=173 Identities=20% Similarity=0.302 Sum_probs=126.9
Q ss_pred CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEecc
Q 001673 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (1033)
Q Consensus 86 Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~ 165 (1033)
++..+-.+.+||..+.++|+++|||+|.+.++.... +..+.+. .++.|+|+||.+|.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~---------ea~~~~~----~ig~PvVVKP~~g~---------- 259 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAE---------DAWEAAQ----DLGYPVVIKPYDGN---------- 259 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEECCCC----------
Confidence 455677899999999999999999999999886520 1122221 12369999999997
Q ss_pred CCCChHHHH-HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCC-----------
Q 001673 166 SAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG----------- 233 (1033)
Q Consensus 166 ~~GgG~~~L-frkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG----------- 233 (1033)
+|.|+. + .+........|.- .......+|+|+|++ |.|+||+|||+++++|+.|.+|-|-|
T Consensus 260 -~G~GV~-l~v~s~~el~~a~~~---a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~ 332 (864)
T TIGR02068 260 -HGRGVT-INILTRDEIESAYEA---AVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIE 332 (864)
T ss_pred -CccCEE-EEeCCHHHHHHHHHH---HHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHH
Confidence 566653 2 1111111111110 112346799999996 89999999999999999999997655
Q ss_pred -------------------------------------------e---e--eecCCCCceeeee--eCCHHHHHHHHHHHH
Q 001673 234 -------------------------------------------V---V--MRNPDGKEVRYPV--LLTPNEKQMAREVCI 263 (1033)
Q Consensus 234 -------------------------------------------~---v--rrN~hgke~r~~v--~Lt~~Ek~iA~k~~~ 263 (1033)
+ + +.|.+-|+...-+ .++|+.+++|.++|+
T Consensus 333 ~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~ 412 (864)
T TIGR02068 333 QINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAK 412 (864)
T ss_pred HhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHH
Confidence 1 3 4677777777766 999999999999999
Q ss_pred HhCCeeeeEeeeee-------CCCeEEEeecC
Q 001673 264 AFRQAVCGFDLLRC-------EGRSYVCDVNG 288 (1033)
Q Consensus 264 afgq~VCGfDLLRs-------~g~s~V~DVNG 288 (1033)
++|+.||||||+-. ..+-.|||||+
T Consensus 413 ~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~ 444 (864)
T TIGR02068 413 IIGLDIAGVDIVTEDISRPLRDTDGAIVEVNA 444 (864)
T ss_pred HhCCCeEEEEEEecCCCCCccccCcEEEEEcC
Confidence 99999999999753 22338999993
No 16
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.56 E-value=3.3e-15 Score=180.56 Aligned_cols=175 Identities=21% Similarity=0.335 Sum_probs=130.2
Q ss_pred ccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEe
Q 001673 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (1033)
Q Consensus 84 ~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYy 163 (1033)
..++..+..++.||..+.++|+++|||+|++..+... . +....+. .++.|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~--~-------~a~~~a~----~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSA--E-------DAWEAAE----EIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCH--H-------HHHHHHH----HcCCCEEEEECCCC--------
Confidence 4677778889999999999999999999999987641 0 1111121 23479999999997
Q ss_pred ccCCCChHHHH-HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCC--CCe------
Q 001673 164 PSSAGGGMKEL-FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (1033)
Q Consensus 164 p~~~GgG~~~L-frkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvv--DG~------ 234 (1033)
+|.|+. + .+........|+. ..+....+|+|+||+ |.|+||+|||+++++|..|.+|-+ ||.
T Consensus 261 ---~G~GV~-~~v~~~~el~~a~~~---a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~L 331 (727)
T PRK14016 261 ---HGRGVT-VNITTREEIEAAYAV---ASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIREL 331 (727)
T ss_pred ---CCCceE-EecCCHHHHHHHHHH---HHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHH
Confidence 566663 2 1111111111110 112356899999997 899999999999999999999854 222
Q ss_pred -------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHHH
Q 001673 235 -------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMAREV 261 (1033)
Q Consensus 235 -------------------------------------------------vr--rN~hgke~r~~v~--Lt~~Ek~iA~k~ 261 (1033)
+| .|.+.|+....+. ++|+-+++|.+|
T Consensus 332 i~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~a 411 (727)
T PRK14016 332 IEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERA 411 (727)
T ss_pred HHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHH
Confidence 23 3777777777775 999999999999
Q ss_pred HHHhCCeeeeEeeeeeC-------CCeEEEeecC
Q 001673 262 CIAFRQAVCGFDLLRCE-------GRSYVCDVNG 288 (1033)
Q Consensus 262 ~~afgq~VCGfDLLRs~-------g~s~V~DVNG 288 (1033)
|+++|+.||||||+... .+..|||||.
T Consensus 412 a~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~ 445 (727)
T PRK14016 412 AKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNA 445 (727)
T ss_pred HHhcCCCEEEEEEEecCcccccccCCcEEEEEcC
Confidence 99999999999998853 5669999994
No 17
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.46 E-value=8.3e-14 Score=168.89 Aligned_cols=179 Identities=20% Similarity=0.249 Sum_probs=125.8
Q ss_pred cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEE
Q 001673 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMI 161 (1033)
Q Consensus 83 ~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~gedHni~I 161 (1033)
...|...+-.+.+||..+.++|+++|||+|++..+... . +..+.+. +.| .|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~--e-------~a~~~~~~~~g----~PvVVKP~~g~------ 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL--E-------EALADYSLFAD----KAIVVKPKSTN------ 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH--H-------HHHHHHHHhcC----CCEEEEECCCC------
Confidence 34555556678889999999999999999999887641 0 1112221 223 69999999998
Q ss_pred EeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee-----
Q 001673 162 YYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM----- 236 (1033)
Q Consensus 162 Yyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vr----- 236 (1033)
.|.|+. +++.+.+.......=-...+.+..+|+||||+ |.|+||+|||+++++|+.|.+|-|.|+=.
T Consensus 536 -----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~e 607 (752)
T PRK02471 536 -----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRE 607 (752)
T ss_pred -----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHH
Confidence 788874 66655544433331000223456799999995 99999999999999999999996655421
Q ss_pred ----ecC---CCCceeee-------------------------------------------------eeCCHHHHHHHHH
Q 001673 237 ----RNP---DGKEVRYP-------------------------------------------------VLLTPNEKQMARE 260 (1033)
Q Consensus 237 ----rN~---hgke~r~~-------------------------------------------------v~Lt~~Ek~iA~k 260 (1033)
.|. -|.+.+.| -.+.|+=+++|.+
T Consensus 608 Li~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~ 687 (752)
T PRK02471 608 LVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVK 687 (752)
T ss_pred HHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHH
Confidence 111 12121111 1456677899999
Q ss_pred HHHHhCCeeeeEeeeeeC-------C--CeEEEeecC
Q 001673 261 VCIAFRQAVCGFDLLRCE-------G--RSYVCDVNG 288 (1033)
Q Consensus 261 ~~~afgq~VCGfDLLRs~-------g--~s~V~DVNG 288 (1033)
||+++|+.||||||+-.+ . +-.|||||+
T Consensus 688 aa~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~ 724 (752)
T PRK02471 688 AAKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNF 724 (752)
T ss_pred HHHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecC
Confidence 999999999999999653 1 557899994
No 18
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.40 E-value=2.6e-12 Score=138.93 Aligned_cols=212 Identities=15% Similarity=0.187 Sum_probs=132.4
Q ss_pred CCcCeeeccccCCCch-HHHHHHHHHcCCcccC-CcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001673 55 PICDCLIAFYSSGYPL-EKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (1033)
Q Consensus 55 P~~D~lIsf~s~gfpl-~kai~y~~lr~p~~lN-dl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~ 132 (1033)
..+|++++..-..+.. ..+-+.++..+...+| +..+..+.+||....++|.++|||+|++..+.++. . +.
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~-~-------~~ 133 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNR-A-------SA 133 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEeccc-c-------cc
Confidence 3579888854221222 3566788888865555 57899999999999999999999999999987321 0 00
Q ss_pred CCe-E-EEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCe
Q 001673 133 EDF-V-EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGT 209 (1033)
Q Consensus 133 ~d~-I-~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~ 209 (1033)
.+. + .+ ...+..|+|+||..|. .|.|+. ++.|... +..-+. ....+..+|+||||+ |.
T Consensus 134 ~~~~~~~~-~~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~~~e-l~~~~~~~~~~~~~~lvEe~i~--G~ 194 (315)
T TIGR01205 134 DELECEQV-AEPLGFPVIVKPAREG-----------SSVGVS----KVKSEEE-LQAALDEAFEYDEEVLVEQFIK--GR 194 (315)
T ss_pred hhhhHHHH-HHhcCCCEEEEeCCCC-----------CccCEE----EECCHHH-HHHHHHHHHhcCCcEEEEcCCC--CE
Confidence 110 0 00 0123469999999985 333431 1111111 110000 112356799999995 99
Q ss_pred eeEEEEEC-CceEEEeeccCCCC-CCeeeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhCC-eeeeEeeeeeC-C
Q 001673 210 DVKVYTVG-PEYAHAEARKSPVV-DGVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-G 279 (1033)
Q Consensus 210 DVKvytVG-p~~vhAe~RKSPvv-DG~vrrN~hgke~r--~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~-g 279 (1033)
++.|.++| +.....+.+-.... --.+..+.+.++.. .|..|+++. +++|.++++++|. .+|+||++... |
T Consensus 195 e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g 274 (315)
T TIGR01205 195 ELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEG 274 (315)
T ss_pred EEEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCC
Confidence 99999999 44333333222100 00123333433333 344677765 7899999999998 69999999885 5
Q ss_pred CeEEEeec-Cceecc
Q 001673 280 RSYVCDVN-GWSFVK 293 (1033)
Q Consensus 280 ~s~V~DVN-GwSFVK 293 (1033)
++||+||| -+.|-.
T Consensus 275 ~~~viEvN~~pg~~~ 289 (315)
T TIGR01205 275 EIYLNEINTIPGMTA 289 (315)
T ss_pred CEEEEEeeCCCCCCC
Confidence 79999999 344433
No 19
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.36 E-value=8.1e-12 Score=135.40 Aligned_cols=232 Identities=16% Similarity=0.220 Sum_probs=148.0
Q ss_pred ChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHHcCCccc-CCcchhhHHhhH
Q 001673 20 SAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDR 97 (1033)
Q Consensus 20 SkPm~~IL~RL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~p~~l-Ndl~~q~~l~DR 97 (1033)
-+--++|++=|.+.| ++++.++..--+-..+...+.+|+++......|-. ..+-+.++..+...+ ++..+..+.+||
T Consensus 18 l~s~~~i~~al~~~g-~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK 96 (299)
T PRK14571 18 LRSGERVKKALEKLG-YEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDK 96 (299)
T ss_pred HHHHHHHHHHHHHcC-CeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCH
Confidence 344567777777654 66666643211111122234678888775433333 356678888885554 668899999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhh
Q 001673 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 177 (1033)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrk 177 (1033)
....++|+ +|||+|++..+... .. ...+..|+|+||.+|. .|.|+. +
T Consensus 97 ~~~k~~l~-~~ip~p~~~~~~~~------------~~-----~~~l~~P~vvKP~~g~-----------~s~Gv~-~--- 143 (299)
T PRK14571 97 LLTYRFLK-GTVEIPDFVEIKEF------------MK-----TSPLGYPCVVKPRREG-----------SSIGVF-I--- 143 (299)
T ss_pred HHHHHHHh-cCCCCCCEEEEech------------hh-----hhhcCCCEEEecCCCC-----------CcCCEE-E---
Confidence 99999998 58999999888531 00 1124579999999985 344442 1
Q ss_pred hCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCc---eEEEeeccCCCCCCe--eeecCCCCcee--eeee
Q 001673 178 VGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDGV--VMRNPDGKEVR--YPVL 249 (1033)
Q Consensus 178 ign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVKvytVGp~---~vhAe~RKSPvvDG~--vrrN~hgke~r--~~v~ 249 (1033)
+.|...... -+. ..+....+|+||||+ |.++.|-++|.. .+.+....-| .++. +..+.++++.. .|..
T Consensus 144 v~~~~el~~-~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~-~~~~~~~~~k~~~g~~~~~~p~~ 219 (299)
T PRK14571 144 CESDEEFQH-ALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRP-KRRFYDYVAKYTKGETEFILPAP 219 (299)
T ss_pred ECCHHHHHH-HHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEec-CCCccccccccCCCCeeEEeCCC
Confidence 211111100 000 112345799999996 899999999753 3555544333 1221 23344444444 3556
Q ss_pred CCHHH----HHHHHHHHHHhCC-eeeeEeeeeeCCCeEEEeecCc
Q 001673 250 LTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNGW 289 (1033)
Q Consensus 250 Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~V~DVNGw 289 (1033)
|+++. +++|.++++++|. .+|++|+.-.+|++||+|||.-
T Consensus 220 l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~~ 264 (299)
T PRK14571 220 LNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINTV 264 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeCC
Confidence 88764 4589999999995 7999999888899999999943
No 20
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.31 E-value=1.2e-12 Score=157.76 Aligned_cols=175 Identities=21% Similarity=0.307 Sum_probs=120.2
Q ss_pred cCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeeccccCcceEEEe
Q 001673 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (1033)
Q Consensus 85 lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I-~v~G~~~~kPfVeKpv~gedHni~IYy 163 (1033)
..+..+-.+..||..+-++|+++|||+|....+.... +....+ .+.| .|+|+||++|.
T Consensus 464 ~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~---------~a~~~~~~~~g----~PVVVKP~~g~-------- 522 (737)
T TIGR01435 464 KDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQA---------LALEAFSLFEN----KAIVVKPKSTN-------- 522 (737)
T ss_pred CccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHhcC----CCEEEeeCCCC--------
Confidence 3344556788999999999999999999998886520 011111 2333 69999999998
Q ss_pred ccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee------
Q 001673 164 PSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM------ 236 (1033)
Q Consensus 164 p~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vr------ 236 (1033)
+|.|+- +++...+ ..++..-+. .++.+..+|.||||+ |+|+||+|+|.++++|..|..|-|-|+=+
T Consensus 523 ---~G~GVs-i~~~~~~-~eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eL 595 (737)
T TIGR01435 523 ---YGLGIT-IFKNGFT-LEDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVREL 595 (737)
T ss_pred ---CcCCeE-EecCcCC-HHHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHH
Confidence 777773 4443322 112221111 234566899999996 99999999999999999999886655311
Q ss_pred ---ecC---CCCcee-----------------------------------------------eee-eCCHHHHHHHHHHH
Q 001673 237 ---RNP---DGKEVR-----------------------------------------------YPV-LLTPNEKQMAREVC 262 (1033)
Q Consensus 237 ---rN~---hgke~r-----------------------------------------------~~v-~Lt~~Ek~iA~k~~ 262 (1033)
.|. .|.+.+ -.+ .+.|+-+++|.+||
T Consensus 596 I~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa 675 (737)
T TIGR01435 596 VAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIA 675 (737)
T ss_pred HHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHH
Confidence 111 122222 222 44567799999999
Q ss_pred HHhCCeeeeEeeeeeC---------CCeEEEeec
Q 001673 263 IAFRQAVCGFDLLRCE---------GRSYVCDVN 287 (1033)
Q Consensus 263 ~afgq~VCGfDLLRs~---------g~s~V~DVN 287 (1033)
+|+|+.||||||+-.. .+--|||||
T Consensus 676 ~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN 709 (737)
T TIGR01435 676 TAVGAAICGVDLIIPDETIPDTDKHAIWGVIEAN 709 (737)
T ss_pred HhcCCCEEEEEEEecCCCCCccccccceEEEEEc
Confidence 9999999999999532 123478998
No 21
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.28 E-value=4.4e-12 Score=129.99 Aligned_cols=123 Identities=21% Similarity=0.301 Sum_probs=85.0
Q ss_pred EEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccc--cceEEeeccCC-CCeeeEEEEECCceEEE
Q 001673 147 FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAHA 223 (1033)
Q Consensus 147 fVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~--gsyIyEEFi~~-~G~DVKvytVGp~~vhA 223 (1033)
+|+||+.|- .|.|+-++-+.-.|.++.++ ..-.+ ..++.|+|+++ ..-|.|++++++.++||
T Consensus 34 ~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e----~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~a 98 (173)
T PF02955_consen 34 IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE----TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHA 98 (173)
T ss_dssp EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SE
T ss_pred EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHH
Confidence 999999997 66677544444445555555 33333 45999999999 55599999999999999
Q ss_pred eeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---CCeeeeEeeeeeCCCeEEEeecCce
Q 001673 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQAVCGFDLLRCEGRSYVCDVNGWS 290 (1033)
Q Consensus 224 e~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~af---gq~VCGfDLLRs~g~s~V~DVNGwS 290 (1033)
..|..+ .|+||.|.+-|+...++.||++|++||.+++..+ |+.-+|+|+| |.|+.|||=.|
T Consensus 99 v~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 99 VRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLREDGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp EEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHTT--EEEEEEE----TTEEEEEE-SS
T ss_pred eecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhcCcEEEEEecc----ccceEEEeccC
Confidence 999996 9999999998888899999999999999999887 7889999999 56999999544
No 22
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.26 E-value=9e-13 Score=154.98 Aligned_cols=85 Identities=38% Similarity=0.655 Sum_probs=77.3
Q ss_pred ccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEE
Q 001673 837 DKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLR 916 (1033)
Q Consensus 837 ~~E~~~RL~p~ya~V~SP~RhvRTrlYFTsESHIhSLLNvlr~g~l~~~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf~ 916 (1033)
..|+.++|||.|+ ||.||||||||||+|||+|||+ ++||| + +.+.||||++|+++|
T Consensus 781 ~~et~~~~~p~~~---sp~~~~r~~lY~~sk~~v~sl~-~~ryG-~-------------------~~~~~ln~~~~t~~~ 836 (1018)
T KOG1057|consen 781 SAETKNRLNPVYL---SPRRHVRTRLYFTSKSHVHSLL-LRRYG-I-------------------SDVEKLNDGLLTSIR 836 (1018)
T ss_pred chhhhcccCcccc---ChhHHHHHHHhhhhHhhhhhhh-hhhcC-C-------------------chhhhhcccchhcee
Confidence 5689999999994 9999999999999999999999 99999 2 346899999999999
Q ss_pred EEecCCCCCCCCCeeEEEEEecCCCCCCC
Q 001673 917 MFENTAVALEDPKRFRIELTFSRGADLSP 945 (1033)
Q Consensus 917 LYE~~~~~~~~~~rf~Iei~~SpG~~~~p 945 (1033)
|||....++.+.++||+|++|+.-.|.+-
T Consensus 837 L~~~~~~d~~~e~~~~~rlyFtreshi~~ 865 (1018)
T KOG1057|consen 837 LYEQILNDPTSERHFHTRLYFTRESHIYT 865 (1018)
T ss_pred echhhccCCcccccceeEEEeccchhhhh
Confidence 99999999999999999999998887443
No 23
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.24 E-value=5.5e-11 Score=129.52 Aligned_cols=246 Identities=15% Similarity=0.171 Sum_probs=151.0
Q ss_pred eeEEEEeec----CcccCChhHHHHHHHhhccCCeEEEEeCc--ceeecCCCcccCCcCeeec-cccCCCchHHHHHHHH
Q 001673 6 KITIGVCVM----EKKVFSAPMGQILDRLQAFGEFEVIHFGD--KVILEDPIEKWPICDCLIA-FYSSGYPLEKAESYAT 78 (1033)
Q Consensus 6 ~~~iGVCAM----d~Ka~SkPm~~IL~RL~~~~~feviiF~d--~vIL~e~ve~wP~~D~lIs-f~s~gfpl~kai~y~~ 78 (1033)
+++|+|-+= +.-..-+-.++|++-|.+. .++++.++- +-++..-.+. .+|+++. ++|..--.-.+...++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~~~~~~~~~~l~~~--~~d~vf~~lhG~~ge~~~i~~~le 79 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVDASGKELVAKLLEL--KPDKCFVALHGEDGENGRVSALLE 79 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEcCCchhHHHHhhcc--CCCEEEEeCCCCCCCChHHHHHHH
Confidence 445665442 2222235567888888774 478777642 1112111111 3565444 4443322246677888
Q ss_pred HcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCc
Q 001673 79 LRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (1033)
Q Consensus 79 lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedH 157 (1033)
+.+ ||.-++..+..+.+||..+-++|+++|||||++.++.... ..+ ..++.|+|+||.+|.
T Consensus 80 ~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~------------~~~----~~~~~P~vVKP~~gg-- 141 (296)
T PRK14569 80 MLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKL------------VAE----DEISFPVAVKPSSGG-- 141 (296)
T ss_pred HcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchhh------------hhH----hhcCCCEEEEeCCCC--
Confidence 888 6777889999999999999999999999999998775310 011 234579999999975
Q ss_pred ceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeee
Q 001673 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMR 237 (1033)
Q Consensus 158 ni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrr 237 (1033)
.+.|+. ++.|....-. -+........+|+||||+ |.++.|.++|+....+.....+ .+.+..
T Consensus 142 ---------ss~Gv~----~v~~~~eL~~-a~~~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~~ 203 (296)
T PRK14569 142 ---------SSIATF----KVKSIQELKH-AYEEASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYDY 203 (296)
T ss_pred ---------CCcCeE----EcCCHHHHHH-HHHHHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCCh
Confidence 333432 1211111100 000111224689999995 8999999999875444444332 222221
Q ss_pred -cCCCCceee--eeeCCH----HHHHHHHHHHHHhCC-eeeeEeeeee-CCCeEEEeec---Cce
Q 001673 238 -NPDGKEVRY--PVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVN---GWS 290 (1033)
Q Consensus 238 -N~hgke~r~--~v~Lt~----~Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~V~DVN---GwS 290 (1033)
+.+.+...+ |..+++ +=+++|.++++++|. .+|.||++-. +|.+||+||| |+.
T Consensus 204 ~~k~~~~~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t 268 (296)
T PRK14569 204 ESKYSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMT 268 (296)
T ss_pred hhccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCC
Confidence 122233332 444543 445689999999995 6999999876 5789999999 753
No 24
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.21 E-value=9e-11 Score=127.47 Aligned_cols=195 Identities=20% Similarity=0.237 Sum_probs=127.7
Q ss_pred CcCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001673 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~ 133 (1033)
.+|++|+.+....++ .+.-..++..+ +++.|+.+...+++||....++|+++|||+|++..+.... +..
T Consensus 69 ~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~---------~~~ 139 (326)
T PRK12767 69 KIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLE---------DFK 139 (326)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHH---------HHH
Confidence 357888765433333 23333444445 4678999999999999999999999999999998775410 111
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001673 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1033)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1033)
..... ..+..|+|.||.+|. .|.|+. +++ |. .++.. .++....+|.||||.-..-.|-+
T Consensus 140 ~~~~~--~~~~~P~viKP~~g~-----------~s~gv~-~v~---~~-~el~~---~~~~~~~~lvqeyi~G~e~~v~~ 198 (326)
T PRK12767 140 AALAK--GELQFPLFVKPRDGS-----------ASIGVF-KVN---DK-EELEF---LLEYVPNLIIQEFIEGQEYTVDV 198 (326)
T ss_pred hhhhc--ccCCCCEEEEeCCCC-----------CccCeE-EeC---CH-HHHHH---HHHhCCCeEEEeccCCceEEEEE
Confidence 11111 123579999999886 444542 222 11 11110 22233489999999545566667
Q ss_pred EEE-CCceEEEeeccCCCCCCeeeecCCCCc-eeeeeeCCHHHHHHHHHHHHHhCCe-eeeEeeeeeCCCeEEEeecC
Q 001673 214 YTV-GPEYAHAEARKSPVVDGVVMRNPDGKE-VRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (1033)
Q Consensus 214 ytV-Gp~~vhAe~RKSPvvDG~vrrN~hgke-~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVNG 288 (1033)
|+. ++.+++...++-- ...++. ....+...++=+++|.++++++|.+ +++||++...|++||+|+|.
T Consensus 199 ~~~~~G~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 199 LCDLNGEVISIVPRKRI--------EVRAGETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EEcCCCCEEEEEEeeee--------eecCCceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 776 6777766665531 112222 2223345677789999999999994 99999999999999999995
No 25
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.19 E-value=1.1e-10 Score=129.27 Aligned_cols=204 Identities=18% Similarity=0.241 Sum_probs=128.8
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001673 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~ 133 (1033)
.+|++++-..-.+..+ .+..++++.+ ||+=++..+..+.+||..+.++|.++|||+|++..+.... +..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~---------~~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGD---------WEE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccc---------cch
Confidence 5899888754334443 4667888877 5666788899999999999999999999999999887521 000
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeE
Q 001673 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (1033)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVK 212 (1033)
..+..-...+..|+|+||.+|. .+.|+. + +.+. .++..-+. ..+.+..+|+|+||+ |.++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~g-----------sS~Gv~-~---v~~~-~el~~a~~~~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLG-----------SSVGIS-K---VKNE-EELAAALDLAFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCC-----------CccCEE-E---ECCH-HHHHHHHHHHHhcCCcEEEEcCcC--CEEEE
Confidence 0000001124579999999975 334442 1 1111 11111000 123467899999998 89999
Q ss_pred EEEECCc-eEEEeeccCCCCCCeee--ecC-CC-CceeeeeeCCHHH----HHHHHHHHHHhCC-eeeeEeeeee-CCCe
Q 001673 213 VYTVGPE-YAHAEARKSPVVDGVVM--RNP-DG-KEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRC-EGRS 281 (1033)
Q Consensus 213 vytVGp~-~vhAe~RKSPvvDG~vr--rN~-hg-ke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs-~g~s 281 (1033)
|-++|.+ .+......-+ -++-+. ... .| .+...|..|+++. +++|.++++++|. .+|.+|++-. +|.+
T Consensus 214 v~vl~~~~~~~~~~ei~~-~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVK-PDDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEec-CCceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999852 1111111110 011111 111 22 2344567777754 6889999999997 6899999986 4569
Q ss_pred EEEeec
Q 001673 282 YVCDVN 287 (1033)
Q Consensus 282 ~V~DVN 287 (1033)
||+|||
T Consensus 293 ~vlEiN 298 (333)
T PRK01966 293 YLNEIN 298 (333)
T ss_pred EEEEee
Confidence 999999
No 26
>PRK06849 hypothetical protein; Provisional
Probab=99.18 E-value=1.3e-10 Score=130.44 Aligned_cols=193 Identities=16% Similarity=0.263 Sum_probs=127.3
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001673 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I 136 (1033)
+|++||-.+..+.+.++.+.++..-.+..++.+....++||...+++++++|||+|++..++.. . +..+..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~--~-------~l~~~~ 147 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDP--E-------AIRNFM 147 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCH--H-------HHHHHh
Confidence 6888888776544444444444344566899999999999999999999999999999998752 0 111111
Q ss_pred -EEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEE
Q 001673 137 -EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (1033)
Q Consensus 137 -~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvyt 215 (1033)
+.. +.|+|+||+.|. .|.|+.+ +.+. ..+. .+ ....+..+|+||||+-....+-+++
T Consensus 148 ~~~~----~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~~-~~~~~~~~ivQe~I~G~e~~~~~~~ 205 (389)
T PRK06849 148 FKTP----HTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-EL-PISKDNPWVMQEFIQGKEYCSYSIV 205 (389)
T ss_pred hcCC----CCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-cc-ccCCCCCeEEEEEecCCeEEEEEEE
Confidence 111 379999999986 3444431 2121 1111 00 1123456999999996555677778
Q ss_pred ECCceEEEeeccCCCCCCeeeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhCCe-eeeEeeeee-CCCeEEEeec
Q 001673 216 VGPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 287 (1033)
Q Consensus 216 VGp~~vhAe~RKSPvvDG~vrrN~hgk-e~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs-~g~s~V~DVN 287 (1033)
.++++++...... ... ..|+ .+.+.....++=.++|.++++++|.+ +++||++.. +|..||+|+|
T Consensus 206 ~~G~v~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 206 RSGELRAHSCYKP-----EYC--AGSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred ECCEEEEEEEeec-----ccc--CCCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 8887665444221 111 1111 12222234567788999999999987 999999998 7889999999
No 27
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=99.17 E-value=2.9e-10 Score=119.14 Aligned_cols=49 Identities=43% Similarity=0.512 Sum_probs=39.8
Q ss_pred HHHHHHhh--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHhhhcccCC
Q 001673 495 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (1033)
Q Consensus 495 e~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~leg 547 (1033)
.++|+.+| |+. ++.+......++.|+||+..||+.||++|+.||+.-.+
T Consensus 28 ~~~G~~lr~~y~~----~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~ 78 (242)
T cd07061 28 FELGRYFRQRYGE----LLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG 78 (242)
T ss_pred HHHHHHHHHHHHH----hcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc
Confidence 46889898 753 33334566789999999999999999999999998664
No 28
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.15 E-value=1.4e-10 Score=129.04 Aligned_cols=187 Identities=13% Similarity=0.171 Sum_probs=120.9
Q ss_pred HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEe
Q 001673 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (1033)
Q Consensus 72 kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeK 150 (1033)
.+..++++.+ ||+-++..+..+.+||..+.++|+++|||+|++..+.+..- ....++.+..- ..++.|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~------~~~~~~~~~~~-~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKY------LNSPRKTLLKL-ESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEcccc------ccChHHHHHHH-HhcCCCEEEe
Confidence 5777888888 56667789999999999999999999999999998876310 00011111101 1245799999
Q ss_pred ecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECC----ce---EE
Q 001673 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH 222 (1033)
Q Consensus 151 pv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp----~~---vh 222 (1033)
|.+|. ..+|++..... -....++.. +..+..+|+||||+ |+++.|-++|. +. +-
T Consensus 178 P~~ggsS~GV~~v~~~~---el~~a~~~~-------------~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l 239 (347)
T PRK14572 178 PVEGGSSVSTYKITNAE---QLMTLLALI-------------FESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIAL 239 (347)
T ss_pred cCCCCCCCCEEEECCHH---HHHHHHHHH-------------HhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceec
Confidence 99974 33333322211 111111111 12355789999996 89999999973 21 11
Q ss_pred --EeeccCCCCCCe---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhCCe-eeeEeeeeeCCCeEEEeec
Q 001673 223 --AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVN 287 (1033)
Q Consensus 223 --Ae~RKSPvvDG~---vrrN~hgke~--r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVN 287 (1033)
.|-+ | .|. ++...+.++. ..|..|+++ =+++|.++++++|.. ++++|++-.+|++||+|||
T Consensus 240 ~~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiN 312 (347)
T PRK14572 240 PATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETN 312 (347)
T ss_pred ccEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeee
Confidence 1222 1 222 2222332222 345667765 378999999999966 9999999888999999999
No 29
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.15 E-value=2.2e-10 Score=127.34 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=132.3
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHH-HhCCCCCCcEEEEeccCCCcccccccccCCe
Q 001673 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL-~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~ 135 (1033)
+|++++-+.. .+. .+++.++..+.++.++..+..+.+||....++| +++|||+|++..++... +....
T Consensus 63 id~v~~~~e~-v~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~---------~~~~~ 131 (380)
T TIGR01142 63 PDYIVPEIEA-IAT-DALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLD---------ELREA 131 (380)
T ss_pred CCEEEeccCc-cCH-HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHH---------HHHHH
Confidence 7777765543 333 345677888877788999999999999999975 89999999999887520 11111
Q ss_pred EEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc-cccccccceEEeeccCCCCeeeEEE
Q 001673 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVRREGSYIYEEFMPTGGTDVKVY 214 (1033)
Q Consensus 136 I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~-~~~r~~gsyIyEEFi~~~G~DVKvy 214 (1033)
+. .++.|+|+||++|. .|.|+. +.+....-...++--. .....++.+|+||||+ .+..+-|.
T Consensus 132 ~~----~~g~P~VvKP~~g~-----------~s~gv~-~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~ 194 (380)
T TIGR01142 132 VE----KIGYPCVVKPVMSS-----------SGKGQS-VVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLL 194 (380)
T ss_pred HH----HcCCCEEEEECCCc-----------CCCCeE-EECCHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEE
Confidence 11 23469999999986 344442 2221111001111000 0001245799999996 35677777
Q ss_pred EE---CCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC-eeeeEeeeeeCCCeEEEee
Q 001673 215 TV---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDV 286 (1033)
Q Consensus 215 tV---Gp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~V~DV 286 (1033)
++ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-+++++||+||
T Consensus 195 ~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~viEi 268 (380)
T TIGR01142 195 TVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVIFSEV 268 (380)
T ss_pred EEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEEEEEe
Confidence 76 3332221 12 22332222222334677788764 4678899999997 7889999999999999999
Q ss_pred c----C---ceecccchhhHHH
Q 001673 287 N----G---WSFVKNSYKYYDD 301 (1033)
Q Consensus 287 N----G---wSFVK~n~kYYDd 301 (1033)
| | |..+..+..+|+-
T Consensus 269 npR~~~~~~~~~~~~g~~~~~~ 290 (380)
T TIGR01142 269 SPRPHDTGMVTLISQGLSEFAL 290 (380)
T ss_pred ecCCCCCceEEeeecCCCHHHH
Confidence 9 2 4455556666643
No 30
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.10 E-value=1.7e-09 Score=120.21 Aligned_cols=198 Identities=16% Similarity=0.261 Sum_probs=131.8
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001673 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~ 133 (1033)
.+|++++-..-++-.+ .+..++++.+ ||+-++..+..+.+||..+.++|+++|||+|++..+.+..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 4788877754445553 6788899888 6677899999999999999999999999999999887521
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeE
Q 001673 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (1033)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVK 212 (1033)
+ +. -..+..|+|+||.+|- .+.|+. + +.|.. ++..-+. ..+-+..+|.||||+ |.++-
T Consensus 158 ~-~~--~~~l~~P~iVKP~~~g-----------sS~Gv~-~---v~~~~-eL~~a~~~a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-PD--AATLTYPVFVKPARSG-----------SSFGVS-K---VNSAD-ELDYAIESARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-hh--hhhcCCCEEEEeCCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHhcCCcEEEECCcC--CEEEE
Confidence 0 11 1235679999999975 233332 1 11111 1111000 122356789999997 88999
Q ss_pred EEEECCc---eEEEeeccCCCCCCeeeec----CC----CCceeeeeeCCHHH----HHHHHHHHHHhCC-eeeeEeeee
Q 001673 213 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD----GKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLR 276 (1033)
Q Consensus 213 vytVGp~---~vhAe~RKSPvvDG~vrrN----~h----gke~r~~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLR 276 (1033)
|-++|.. .+....+..+ ..|.++.. .+ ......|..|+++. +++|.++++++|. .+|.+|++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 8888753 2222223322 23333311 11 11234677787753 5789999999999 799999987
Q ss_pred e-CCCeEEEeec
Q 001673 277 C-EGRSYVCDVN 287 (1033)
Q Consensus 277 s-~g~s~V~DVN 287 (1033)
. +|.+||+|||
T Consensus 296 ~~~g~~~llEIN 307 (343)
T PRK14568 296 QEDGTVVLNEVN 307 (343)
T ss_pred eCCCCEEEEEee
Confidence 6 5779999999
No 31
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.08 E-value=1e-09 Score=123.69 Aligned_cols=203 Identities=13% Similarity=0.180 Sum_probs=128.0
Q ss_pred CcCeeeccccCCCchH-HHHHHHHHcCCcccCCc-chhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001673 56 ICDCLIAFYSSGYPLE-KAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~-kai~y~~lr~p~~lNdl-~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~ 133 (1033)
.+|++++...-.+-.+ .+..++++.+...++.- .+..+.+||..+.++|+++|||||++..+.+... ..+.+
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~ 160 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKE 160 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchH
Confidence 4787776654334443 78899999996666665 6999999999999999999999999887765210 00111
Q ss_pred CeEE-EcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee
Q 001673 134 DFVE-VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (1033)
Q Consensus 134 d~I~-v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DV 211 (1033)
+... +. ..++.|+|+||..+- ..+|.+-.... .|-+.+ + ...+-+..+|.||||+ |.++
T Consensus 161 ~~~~~~~-~~lg~PviVKP~~~GsS~Gv~~v~~~~------el~~al-------~---~a~~~~~~vlVEefI~--GrEi 221 (364)
T PRK14570 161 GIKKDIK-EVLGYPVIVKPAVLGSSIGINVAYNEN------QIEKCI-------E---EAFKYDLTVVIEKFIE--AREI 221 (364)
T ss_pred HHHHHHH-HhcCCCEEEEeCCCCCCCcEEEeCCHH------HHHHHH-------H---HHHhCCCCEEEECCcC--CEEE
Confidence 1111 10 124579999999864 22332211110 111111 1 0123356689999997 9999
Q ss_pred EEEEECCceEEEeeccCCCC-----CCeee-----ecCC-CCce--eeeeeCCH----HHHHHHHHHHHHhCC-eeeeEe
Q 001673 212 KVYTVGPEYAHAEARKSPVV-----DGVVM-----RNPD-GKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFD 273 (1033)
Q Consensus 212 KvytVGp~~vhAe~RKSPvv-----DG~vr-----rN~h-gke~--r~~v~Lt~----~Ek~iA~k~~~afgq-~VCGfD 273 (1033)
.|-++|..... -+|+. ++.|- ...+ |+.. ..|..|++ +-+++|.++++++|. .+|.+|
T Consensus 222 ~v~Vlg~~~~~----v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvD 297 (364)
T PRK14570 222 ECSVIGNEQIK----IFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARID 297 (364)
T ss_pred EEEEECCCCce----EeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 99999974321 22211 11111 1111 3322 22555665 567889999999999 589999
Q ss_pred eeee--CCCeEEEeec
Q 001673 274 LLRC--EGRSYVCDVN 287 (1033)
Q Consensus 274 LLRs--~g~s~V~DVN 287 (1033)
++=. +|.+||+|||
T Consensus 298 f~l~~~~g~~yvlEiN 313 (364)
T PRK14570 298 FLIEKDTGLIYLNEIN 313 (364)
T ss_pred EEEECCCCcEEEEEee
Confidence 9776 3779999999
No 32
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.99 E-value=1.6e-09 Score=122.29 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=122.8
Q ss_pred CCch-HHHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecC
Q 001673 67 GYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 144 (1033)
Q Consensus 67 gfpl-~kai~y~~lr~p-~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~ 144 (1033)
..|| .....+++..+. +.-.+..+-.+.+||....++|+++|||+|++..+... .+..+.+. .++
T Consensus 36 E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~---------~ea~~~~~----~~g 102 (379)
T PRK13790 36 EQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERK---------KDALTYIE----NCE 102 (379)
T ss_pred cHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCH---------HHHHHHHH----hcC
Confidence 3355 456678888884 44466688889999999999999999999999877641 01222222 134
Q ss_pred CCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEE--
Q 001673 145 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH-- 222 (1033)
Q Consensus 145 kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vh-- 222 (1033)
.|+|+||..+. .|.|+. +.+......+.+.- +.....++.+|+||||.-.--.|-+++-|..++.
T Consensus 103 ~PvVvKp~~~~-----------~gkGV~-iv~~~~el~~a~~~-~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~ 169 (379)
T PRK13790 103 LPVVVKKDGLA-----------AGKGVI-IADTIEAARSAIEI-MYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFD 169 (379)
T ss_pred CCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHHH-HHhcCCCCeEEEEEcccCceEEEEEEeeCCEEEecc
Confidence 69999999875 344442 22211111111110 0001224679999999766678888887765432
Q ss_pred EeeccC-CCCCCeeeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---CCeeee---EeeeeeCCCeEEEeecC
Q 001673 223 AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (1033)
Q Consensus 223 Ae~RKS-PvvDG~vrrN~hgke~r~~v-~Lt~~E-----k~iA~k~~~af---gq~VCG---fDLLRs~g~s~V~DVNG 288 (1033)
+..++. ...+|...-|+.|-+.-.|+ .|+++. ++||.++++++ |...+| +|++-+.+++||+|||.
T Consensus 170 ~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 170 CIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred cccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 222221 12456555565443333344 467653 67899999998 545455 59988888999999996
No 33
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.91 E-value=4.4e-09 Score=117.65 Aligned_cols=198 Identities=20% Similarity=0.260 Sum_probs=120.8
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHH-hCCCCCCcEEEEeccCCCcccccccccCC
Q 001673 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEED 134 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~-~~gIp~P~~~~~~rd~p~~~~~~~~e~~d 134 (1033)
.+|++|+.... .+. .+++.++..+..+..+..+-.+.+||....+.|. ++|||+|++..++... +...
T Consensus 75 ~id~vi~~~e~-~~~-~~~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~---------~l~~ 143 (395)
T PRK09288 75 KPDYIVPEIEA-IAT-DALVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLE---------ELRA 143 (395)
T ss_pred CCCEEEEeeCc-CCH-HHHHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHH---------HHHH
Confidence 38888886654 333 3355566667666688899999999999999885 7899999999887520 1111
Q ss_pred eEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeEE
Q 001673 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKV 213 (1033)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~~~G~DVKv 213 (1033)
.+. .++.|+|+||..|. .|.|+. +.+........++--....| .+..+|+||||+ .|..+-|
T Consensus 144 ~~~----~~g~P~VvKP~~g~-----------~s~Gv~-~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv 206 (395)
T PRK09288 144 AVE----EIGYPCVVKPVMSS-----------SGKGQS-VVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITL 206 (395)
T ss_pred HHH----hcCCCEEEEeCCCc-----------CCCCeE-EECCHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEE
Confidence 111 23469999999886 344442 22211111111110000001 236799999996 4566777
Q ss_pred EEECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCC-eeeeEeeeeeCCCeEEEe
Q 001673 214 YTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVCD 285 (1033)
Q Consensus 214 ytVGp---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek----~iA~k~~~afgq-~VCGfDLLRs~g~s~V~D 285 (1033)
.++.. ...... | . +.++.+.+-.+.-.|..|+++.. ++|.++++++|. -++.+|+.-+++++||+|
T Consensus 207 ~~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~viE 280 (395)
T PRK09288 207 LTVRAVDGGTHFCA----P-I-GHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFSE 280 (395)
T ss_pred EEEEcCCCCEEEec----C-c-ccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEEE
Confidence 66532 222221 1 1 22222211122345777887654 488999999984 466789998888999999
Q ss_pred ec
Q 001673 286 VN 287 (1033)
Q Consensus 286 VN 287 (1033)
+|
T Consensus 281 in 282 (395)
T PRK09288 281 VS 282 (395)
T ss_pred ec
Confidence 99
No 34
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.90 E-value=1.2e-09 Score=107.81 Aligned_cols=161 Identities=23% Similarity=0.327 Sum_probs=94.5
Q ss_pred HHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeeccccCcceEEEeccCCCChH
Q 001673 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGM 171 (1033)
Q Consensus 93 ~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~ 171 (1033)
++.||....+++.+.|||+|++..+.... +..+.+. ++ .|+|+||..|. .|.|+
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~~~~-----~p~vvKp~~g~-----------gs~gv 55 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAEDLG-----FPFVVKPVDGS-----------GSRGV 55 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHHHSS-----SSEEEEESS-S-----------TTTT-
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHHHcC-----CCEEEEcCccc-----------cCCCE
Confidence 36789999999999999999999987631 1122222 22 59999999996 34444
Q ss_pred HHHHhhhCCCcccccCCcccc-----ccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCC---Cc
Q 001673 172 KELFRKVGNRSSEFHPDVRRV-----RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG---KE 243 (1033)
Q Consensus 172 ~~Lfrkign~sS~~~p~~~~~-----r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hg---ke 243 (1033)
. +++.. + ++..-+..+ ..++.||.||||+...-.+.+++.+++.+.+...+.- .....+. ..
T Consensus 56 ~-~~~~~---~-~l~~~~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~ 125 (184)
T PF13535_consen 56 F-IVHSP---E-ELEAALAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-----RQSPGHFSGGVP 125 (184)
T ss_dssp E-EESSH---H-HHHHHHHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-----EEETCCCSSSEE
T ss_pred E-EeCCH---H-HHHHHHHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-----ccccccccccee
Confidence 2 22211 1 111000011 2357899999999655777778888887555544331 1112222 23
Q ss_pred eeeeeeCC----HHHHHHHHHHHHHhCC--eeeeEeeeeeCCC-eEEEeecC
Q 001673 244 VRYPVLLT----PNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 288 (1033)
Q Consensus 244 ~r~~v~Lt----~~Ek~iA~k~~~afgq--~VCGfDLLRs~g~-s~V~DVNG 288 (1033)
..+....+ ++=++.+.++++++|. .++++|+++..+| .|++|||.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 126 TGYSVPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp EEEEES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred eeeecccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 34444322 5667788999999997 9999999999877 69999994
No 35
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.90 E-value=4.9e-09 Score=116.24 Aligned_cols=263 Identities=24% Similarity=0.397 Sum_probs=153.6
Q ss_pred CCeeEEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCch-HHHHHHHHHcC-
Q 001673 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRK- 81 (1033)
Q Consensus 4 ~~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl-~kai~y~~lr~- 81 (1033)
.+..+||.|--.+|.+|==-+. |--+.+...+++|--. ++.|+++==-.||+|-=..+. .. ....+|.+..-
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~-~~~~~~~~gi~~v~id----~~~pl~~QgpfDvIlHKltd~-~~~~~l~~y~~~hP~ 78 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPS-FIDLARSRGIDFVPID----LSKPLEEQGPFDVILHKLTDE-DWVQQLEEYIKKHPE 78 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCH-HCCCCCCCTTEEEEEE----CCSSSGCC--SCEEEE--CHC-HHHHHHHHHHHH-TT
T ss_pred ccceEEEEEECHHHHHHhhHHH-HHHHHHhcCCEEEEcC----CCCCcccCCCcEEEEEeCCCH-HHHHHHHHHHHHCCC
Confidence 4678999888777765432222 2233444557665433 466666554489999877763 33 55667777632
Q ss_pred CcccCCcchhhHHhhHHHHHHHHHhC-------CCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccc
Q 001673 82 PFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154 (1033)
Q Consensus 82 p~~lNdl~~q~~l~DR~~vlqiL~~~-------gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~g 154 (1033)
..+|..++++..|.||...|++|++. +|.+|+.+++..+. . +..+.+.-.| +.-|+|.||+-+
T Consensus 79 v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-~-------~~~~~l~~ag--L~fPlI~KPlvA 148 (307)
T PF05770_consen 79 VVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA-E-------SLPELLKEAG--LKFPLICKPLVA 148 (307)
T ss_dssp SEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH-C-------CHHHHHHCTT--S-SSEEEEESB-
T ss_pred eEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH-H-------HHHHHHHHCC--CcccEEeeehhh
Confidence 35788889999999998888888764 78999999998641 1 1112222334 578999999984
Q ss_pred ----cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccC-C
Q 001673 155 ----DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-P 229 (1033)
Q Consensus 155 ----edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKS-P 229 (1033)
+-|...|-|... |-.. + +...+.||||.-+|.=-||||||..+. ...|+| |
T Consensus 149 ~Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFVNHggvLfKVyVvGd~v~-~v~R~SLp 204 (307)
T PF05770_consen 149 CGSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFVNHGGVLFKVYVVGDKVF-VVKRPSLP 204 (307)
T ss_dssp SSTSCCCEEEEE-SGG---GGTT----------------------SSEEEEE----TTEEEEEEEETTEEE-EEEEE---
T ss_pred cCCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEeecCCCEEEEEEEecCEEE-EEECCCCC
Confidence 568888888643 3321 1 334699999999999999999997654 466666 2
Q ss_pred CC-CCe-------ee----ecCCCCce-------eeeeeCCHHH--HHHHHHHHHHhCCeeeeEeeeeeCC---CeEEEe
Q 001673 230 VV-DGV-------VM----RNPDGKEV-------RYPVLLTPNE--KQMAREVCIAFRQAVCGFDLLRCEG---RSYVCD 285 (1033)
Q Consensus 230 vv-DG~-------vr----rN~hgke~-------r~~v~Lt~~E--k~iA~k~~~afgq~VCGfDLLRs~g---~s~V~D 285 (1033)
=+ .|+ |. ++.+-... -..+.+.+++ +.+|..+-+++|++..|||++|.++ .-||+|
T Consensus 205 n~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VID 284 (307)
T PF05770_consen 205 NVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVID 284 (307)
T ss_dssp ---SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEE
T ss_pred CCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEE
Confidence 11 111 11 11110000 0112222222 6799999999999999999999865 499999
Q ss_pred ecCceecccchhhHHHHHHHHHHHH
Q 001673 286 VNGWSFVKNSYKYYDDAACVLRKMF 310 (1033)
Q Consensus 286 VNGwSFVK~n~kYYDdcA~iL~~~~ 310 (1033)
||=|==-|+-..|+ .+|.++|
T Consensus 285 INyFPgY~~vp~f~----~~l~~~~ 305 (307)
T PF05770_consen 285 INYFPGYKKVPDFE----SVLTDFI 305 (307)
T ss_dssp EEES--TTTSCTHH----HHHHHHH
T ss_pred eccCCCccCCCChH----HHHHHHh
Confidence 99654446667777 4444444
No 36
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.89 E-value=7e-09 Score=115.11 Aligned_cols=193 Identities=21% Similarity=0.310 Sum_probs=117.3
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001673 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I 136 (1033)
||++ ++-....|. .++++++..+..+.++..+..+.+||....++|+++|||+|++..+.... +....+
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~---------~~~~~~ 129 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEE---------ELDAAL 129 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHH---------HHHHHH
Confidence 5654 433333443 45677777766677999999999999999999999999999999987521 111222
Q ss_pred EEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEE
Q 001673 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 216 (1033)
Q Consensus 137 ~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytV 216 (1033)
. .++.|+|+||..|. +.|.|+. ..+ +.. ++..-+... .+..+|.||||+ .|..+-|.++
T Consensus 130 ~----~~g~P~vvKp~~~g----------~~g~Gv~-~v~---~~~-el~~a~~~~-~~~~~lvEe~I~-~~~E~sv~~~ 188 (352)
T TIGR01161 130 Q----ELGFPVVLKARTGG----------YDGRGQY-RIR---NEA-DLPQAAKEL-GDRECIVEEFVP-FERELSVIVA 188 (352)
T ss_pred H----HcCCCEEEEeCCCC----------CCCCCEE-EEC---CHH-HHHHHHHhc-CCCcEEEEecCC-CCeEEEEEEE
Confidence 1 12369999999863 0133432 111 111 111000011 134799999997 3566766655
Q ss_pred C---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCCe-eeeEeeeeeCCC-eEEEeec
Q 001673 217 G---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 287 (1033)
Q Consensus 217 G---p~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~g~-s~V~DVN 287 (1033)
. +++.. -|+..- +.++-.......|..++++ =+++|.+++++||.. ++++|+..+.+| +||+|||
T Consensus 189 ~~~~G~~~~-----~~~~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~Ein 262 (352)
T TIGR01161 189 RSADGETAF-----YPVVEN-IHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELA 262 (352)
T ss_pred EcCCCCEEE-----ECCccc-EEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEec
Confidence 2 22221 232221 1121111112235556643 367899999999984 999999988555 9999999
No 37
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.84 E-value=8.3e-09 Score=117.23 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=121.9
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001673 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d 134 (1033)
+|++|+ +...|+ ..+...++..+ |+.-++..+-.+.+||....++|+++|||+|++..++.. . +...
T Consensus 63 id~vi~--~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~--~-------~~~~ 131 (420)
T PRK00885 63 IDLTVV--GPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA--E-------EALA 131 (420)
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHH
Confidence 466664 334555 23445666677 555567778889999999999999999999999887641 0 1122
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001673 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1033)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1033)
.+. .+..|+|+||..|. -.++++-.... -....++..-+. +.+. +.++.+|+||||+-.--.|-+
T Consensus 132 ~~~----~~~~P~VvKP~~~~gs~Gv~~v~~~~---el~~~~~~~~~~-~~~~------~~~~~vlvEe~i~G~E~sv~~ 197 (420)
T PRK00885 132 YLD----EKGAPIVVKADGLAAGKGVVVAMTLE---EAKAAVDDMLAG-NKFG------DAGARVVIEEFLDGEEASFFA 197 (420)
T ss_pred HHH----HcCCCEEEEeCCCCCCCcEEEeCCHH---HHHHHHHHHhhc-cccc------CCCCeEEEEEccCCcEEEEEE
Confidence 221 12369999999875 11222221111 011122221110 0010 134679999999743334444
Q ss_pred EEECCceEE-Eeecc-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhC---C---eeeeEeeeeeCC
Q 001673 214 YTVGPEYAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRCEG 279 (1033)
Q Consensus 214 ytVGp~~vh-Ae~RK-SPvvDG~vrrN~hgke~r~~v~-Lt~~Ek-----~iA~k~~~afg---q---~VCGfDLLRs~g 279 (1033)
++-|..+.. ..+|. -...+|...-|+.|-+.-.|.. |+++.. +|+.++.++++ . -++.+|+.-+.+
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~ 277 (420)
T PRK00885 198 FVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKD 277 (420)
T ss_pred EECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECC
Confidence 544444332 22221 1124565555666655556664 777533 36667777654 3 568899999999
Q ss_pred CeEEEeecC
Q 001673 280 RSYVCDVNG 288 (1033)
Q Consensus 280 ~s~V~DVNG 288 (1033)
++||+|+|.
T Consensus 278 g~~viEin~ 286 (420)
T PRK00885 278 GPKVIEFNA 286 (420)
T ss_pred CcEEEEEec
Confidence 999999993
No 38
>PRK07206 hypothetical protein; Provisional
Probab=98.76 E-value=8.4e-08 Score=108.33 Aligned_cols=207 Identities=14% Similarity=0.178 Sum_probs=120.1
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001673 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I 136 (1033)
+|++|+..-.+.++ |-+-.+..++...|+...-...+||....+.|.++|||+|++..+... . +..+.+
T Consensus 71 ~d~vi~~~e~~~~~--~a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~--~-------e~~~~~ 139 (416)
T PRK07206 71 PEAIIAGAESGVEL--ADRLAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADW--E-------EAEAWL 139 (416)
T ss_pred CCEEEECCCccHHH--HHHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCH--H-------HHHHHH
Confidence 68999865443443 222234445555788888889999999999999999999999988641 0 112222
Q ss_pred EEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEE
Q 001673 137 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (1033)
Q Consensus 137 ~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvyt 215 (1033)
.-.| .+..|+|+||++|. -.+|++..... -.+..++..-+..+.+. ..+..+|.||||+-.--.|-+++
T Consensus 140 ~~~g-~~~~P~VvKP~~g~gs~gv~~v~~~~---el~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~~ 209 (416)
T PRK07206 140 RENG-LIDRPVVIKPLESAGSDGVFICPAKG---DWKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFVS 209 (416)
T ss_pred HhcC-CCCCCEEEeCCCCCCCCCEEEeCCHH---HHHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEEE
Confidence 1111 01349999999975 13333333221 12223333211111111 13568999999975334555666
Q ss_pred ECCceEE-Eeec--cCCCCCCeeeecCCCCceeeee--eCCHHHHHHHHHHHHHhCC--eeeeEeeeeeCCCeEEEeec
Q 001673 216 VGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYPV--LLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 287 (1033)
Q Consensus 216 VGp~~vh-Ae~R--KSPvvDG~vrrN~hgke~r~~v--~Lt~~Ek~iA~k~~~afgq--~VCGfDLLRs~g~s~V~DVN 287 (1033)
.+++... +..+ +.+..+|.+.... .. ..|. ...++=.++|.++++++|. .++.+|+..+.++++|+|||
T Consensus 210 ~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 210 LDGNHLVTEIVRYHKTSLNSGSTVYDY--DE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred ECCEEEEEEeEEeeecccCCCCceecc--cc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 6666433 2222 2222233221110 00 0111 1112234568899999998 47889999999999999999
No 39
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.74 E-value=1.8e-08 Score=127.22 Aligned_cols=199 Identities=17% Similarity=0.238 Sum_probs=129.2
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001673 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d 134 (1033)
..|.+|+.+|.-.|+ .....++..+ |+.-|+..+..+++||.+..++|+++|||+|++..+... .+..+
T Consensus 629 ~~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~---------ee~~~ 698 (1066)
T PRK05294 629 KPKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSV---------EEALE 698 (1066)
T ss_pred CCCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCH---------HHHHH
Confidence 368899988877676 4556677777 455688899999999999999999999999999988641 01112
Q ss_pred eEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCC-CeeeEE
Q 001673 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVKV 213 (1033)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~-G~DVKv 213 (1033)
.+. .++.|+|+||..|. .|.|+. ++.....-...+.- ......+..+|.||||+-. .-+|-+
T Consensus 699 ~~~----~igyPvvVKP~~~~-----------Gg~Gv~-iv~~~eeL~~~~~~-a~~~s~~~~vlIEefI~G~~E~sV~~ 761 (1066)
T PRK05294 699 VAE----EIGYPVLVRPSYVL-----------GGRAME-IVYDEEELERYMRE-AVKVSPDHPVLIDKFLEGAIEVDVDA 761 (1066)
T ss_pred HHH----hcCCCeEEEeCCCC-----------CCCcEE-EECCHHHHHHHHHH-HHhhCCCCcEEEEecCCCCEEEEEEE
Confidence 222 23469999998875 333432 21111000000000 0001235679999999764 678888
Q ss_pred EEECCce-EEE-eeccCCCCCCeeeecCCCCceee---eeeCCHHH----HHHHHHHHHHhCC-eeeeEeeeeeCCCeEE
Q 001673 214 YTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (1033)
Q Consensus 214 ytVGp~~-vhA-e~RKSPvvDG~vrrN~hgke~r~---~v~Lt~~E----k~iA~k~~~afgq-~VCGfDLLRs~g~s~V 283 (1033)
+.-|..+ +.+ +.+..+ ...|.|+... +..|++++ +++|.++++++|. .++++|++..++++||
T Consensus 762 v~dg~~v~i~~i~e~i~~-------~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~yV 834 (1066)
T PRK05294 762 ICDGEDVLIGGIMEHIEE-------AGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVYV 834 (1066)
T ss_pred EecCCeEEEeeeEEeeee-------ccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeEEE
Confidence 8766532 222 232221 2345444433 34677643 4578888999998 4666999999999999
Q ss_pred EeecC
Q 001673 284 CDVNG 288 (1033)
Q Consensus 284 ~DVNG 288 (1033)
+|||.
T Consensus 835 iEiNp 839 (1066)
T PRK05294 835 IEVNP 839 (1066)
T ss_pred EEEec
Confidence 99994
No 40
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.69 E-value=6.8e-08 Score=119.98 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=126.2
Q ss_pred CcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccc
Q 001673 51 IEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (1033)
Q Consensus 51 ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~ 130 (1033)
+..++.+|+++++.-.+ ..-|-+-.+..+.. -|+.++-.+.+||...-+.|+++|||+|++..++...
T Consensus 65 ~~~~~~i~~V~~~se~~--v~~aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~--------- 132 (887)
T PRK02186 65 VSSLDGVAGIMSSSEYF--IEVASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRA--------- 132 (887)
T ss_pred HHhcCCCCEEEeCchhh--HHHHHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHH---------
Confidence 45666788888873322 32233444444533 3778889999999999999999999999999887521
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccc--cccceEEeeccCCCC
Q 001673 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFMPTGG 208 (1033)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r--~~gsyIyEEFi~~~G 208 (1033)
+..+.+. .+..|+|+||++|. .|.|+. +.+ |.. ++..-+.... .++.||.||||+-.-
T Consensus 133 e~~~~~~----~~~~PvVVKP~~g~-----------gS~GV~-~v~---~~~-el~~a~~~~~~~~~~~~lvEEfI~G~E 192 (887)
T PRK02186 133 VALDALD----GLTYPVVVKPRMGS-----------GSVGVR-LCA---SVA-EAAAHCAALRRAGTRAALVQAYVEGDE 192 (887)
T ss_pred HHHHHHH----hCCCCEEEEeCCCC-----------CCCCeE-EEC---CHH-HHHHHHHHHHhcCCCcEEEeecccCCc
Confidence 1122222 23479999999986 233332 111 110 0000000111 267899999998655
Q ss_pred eeeEEEEECCc-eEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC--eeeeEeeeeeCCCe
Q 001673 209 TDVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ--AVCGFDLLRCEGRS 281 (1033)
Q Consensus 209 ~DVKvytVGp~-~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~E----k~iA~k~~~afgq--~VCGfDLLRs~g~s 281 (1033)
-.|-+++.++. ++.+..++.......|.-. +.-+|..++++. .+++.++++++|. .++++|+...++++
T Consensus 193 ~sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~ 268 (887)
T PRK02186 193 YSVETLTVARGHQVLGITRKHLGPPPHFVEI----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTV 268 (887)
T ss_pred EEEEEEEECCcEEEEEEEeeecCCCCCeEEe----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCE
Confidence 56777776543 4555555542111112111 123566777643 4678999999998 56899999999999
Q ss_pred EEEeec
Q 001673 282 YVCDVN 287 (1033)
Q Consensus 282 ~V~DVN 287 (1033)
||||||
T Consensus 269 ~liEIn 274 (887)
T PRK02186 269 VIIEIN 274 (887)
T ss_pred EEEEEC
Confidence 999999
No 41
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.68 E-value=4.7e-08 Score=113.42 Aligned_cols=203 Identities=18% Similarity=0.248 Sum_probs=120.7
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001673 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~ 132 (1033)
.||++++-| ||-- ..+.+.++..+ ||+-++.....+++||....++|+++|||+|.+....-+ +.
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~----------~~ 140 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLA----------DL 140 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCC----------CH
Confidence 489999855 3322 23445666666 567788999999999999999999999999876532110 01
Q ss_pred CCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCCCCe
Q 001673 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGT 209 (1033)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~~G~ 209 (1033)
++....- ..++-|+|+||.+|. -|.|++ +.+....-...|+--.. ..-.++.++.|+||. ++.
T Consensus 141 ~e~~~~~-~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~ 206 (472)
T PRK07178 141 DEALAEA-ERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPK 206 (472)
T ss_pred HHHHHHH-HHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCe
Confidence 1111100 123479999999986 444553 32221111111110000 000144688999994 465
Q ss_pred eeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCe-eeeEeeeee-CCC
Q 001673 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQA-VCGFDLLRC-EGR 280 (1033)
Q Consensus 210 DVKvytVG---p~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek----~iA~k~~~afgq~-VCGfDLLRs-~g~ 280 (1033)
.+-|-++| ++++|...|... .-+++..--|..-...|+++.+ ++|.++++++|.. ++.+|++-. +|+
T Consensus 207 eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~ 282 (472)
T PRK07178 207 HIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGE 282 (472)
T ss_pred EEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCC
Confidence 56555554 356666555431 1122222222221226777655 4899999999975 455999985 788
Q ss_pred eEEEeecC
Q 001673 281 SYVCDVNG 288 (1033)
Q Consensus 281 s~V~DVNG 288 (1033)
+||+|||.
T Consensus 283 ~y~iEiNp 290 (472)
T PRK07178 283 VYFMEMNT 290 (472)
T ss_pred EEEEEEeC
Confidence 99999993
No 42
>PRK05586 biotin carboxylase; Validated
Probab=98.67 E-value=5.3e-08 Score=111.90 Aligned_cols=202 Identities=18% Similarity=0.272 Sum_probs=118.1
Q ss_pred CCcCeeeccccCCCchH-HHHH-HHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCcccccc
Q 001673 55 PICDCLIAFYSSGYPLE-KAES-YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYF 129 (1033)
Q Consensus 55 P~~D~lIsf~s~gfpl~-kai~-y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~rd~p~~~~~~~ 129 (1033)
..||+++|-| ||-.+ ..++ -++..+ ||+..+.....+++||....++|+++|||+|++.. +..
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~---------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIEN---------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCC----------
Confidence 5789998865 33221 2333 334455 57889999999999999999999999999998743 222
Q ss_pred cccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCC
Q 001673 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (1033)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G 208 (1033)
.++....- ..++.|+|+||++|. -.++++..... -....|+...+.+- . .+ .++.+|.||||. ++
T Consensus 141 --~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~---el~~a~~~~~~~~~---~---~~-~~~~vivEe~i~-g~ 206 (447)
T PRK05586 141 --EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEE---ELIKAFNTAKSEAK---A---AF-GDDSMYIEKFIE-NP 206 (447)
T ss_pred --HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHH---HHHHHHHHHHHHHH---H---hc-CCCeEEEEecCC-CC
Confidence 11111100 123479999999986 12222221111 11122221110000 0 01 146799999996 34
Q ss_pred eeeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceee-e-eeCCHHH----HHHHHHHHHHhCCeeee-Eeeeee-
Q 001673 209 TDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRY-P-VLLTPNE----KQMAREVCIAFRQAVCG-FDLLRC- 277 (1033)
Q Consensus 209 ~DVKvytVG---p~~vhAe~RKSPvvDG~vrrN~hgke~r~-~-v~Lt~~E----k~iA~k~~~afgq~VCG-fDLLRs- 277 (1033)
..+-+.+++ +++++.-.|... ..+++ ++-+.. | ..|+++. +++|.++++++|..-++ +|++-.
T Consensus 207 ~ei~v~v~~d~~G~~~~~~~~~~~----~~~~~--~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~ 280 (447)
T PRK05586 207 KHIEFQILGDNYGNVVHLGERDCS----LQRRN--QKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK 280 (447)
T ss_pred eEEEEEEEECCCCCEEEEeceecc----eEecc--cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC
Confidence 668887776 355555333221 12222 122221 2 2477643 46789999999976554 999987
Q ss_pred CCCeEEEeecC
Q 001673 278 EGRSYVCDVNG 288 (1033)
Q Consensus 278 ~g~s~V~DVNG 288 (1033)
+|..||||||.
T Consensus 281 ~g~~~~iEvNp 291 (447)
T PRK05586 281 DGNFYFMEMNT 291 (447)
T ss_pred CCCEEEEEEEC
Confidence 45589999993
No 43
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.67 E-value=5.2e-08 Score=109.62 Aligned_cols=195 Identities=19% Similarity=0.249 Sum_probs=117.2
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCe
Q 001673 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~ 135 (1033)
.||++ +|-....|. .++++++.. ..+.++.++..+.+||...-+.|+++|||+|++..+.... +....
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~---------~l~~~ 130 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAE---------DLEAA 130 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHH---------HHHHH
Confidence 57764 443344454 566777666 5577999999999999999999999999999999887520 11112
Q ss_pred EEEcceecCCCEEEeeccc-c-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001673 136 VEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1033)
Q Consensus 136 I~v~G~~~~kPfVeKpv~g-e-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1033)
+. .++.|+|+||..| . -+++++-.... -....++.+ ....+|+||||+- |..+-|
T Consensus 131 ~~----~~g~P~vlKp~~~g~~g~Gv~~v~~~~---el~~a~~~~---------------~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 131 LA----DLGLPAVLKTRRGGYDGKGQWVIRSAE---DLEAAWALL---------------GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HH----HcCCcEEEEeCCCCcCCCCeEEECCHH---HHHHHHHhc---------------CCCCEEEEecCCC-CeEEEE
Confidence 21 1346999999984 3 23333322211 111122211 2457999999973 455666
Q ss_pred EEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCe-eeeEeeeeeCCC-eEEEeec
Q 001673 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 287 (1033)
Q Consensus 214 ytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs~g~-s~V~DVN 287 (1033)
.+++.. .-+.+--|+.. .+.++-.-.....|..+++ +=+++|.+++++||.. |+++|+..+.++ +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 655321 00111123111 1111100001123445554 3457889999999975 888999998555 9999999
Q ss_pred C
Q 001673 288 G 288 (1033)
Q Consensus 288 G 288 (1033)
-
T Consensus 265 p 265 (372)
T PRK06019 265 P 265 (372)
T ss_pred C
Confidence 3
No 44
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.66 E-value=4e-08 Score=98.61 Aligned_cols=146 Identities=25% Similarity=0.356 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHH
Q 001673 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (1033)
Q Consensus 95 ~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~L 174 (1033)
.||++.++.|.++|||+|.++..... . .. ..|+|+||..|. -|.|+ +.
T Consensus 2 ~dK~~~~~~L~~~gi~~P~~~~~~~~------------~---~~-----~~~~viKp~~G~-----------Gg~~i-~~ 49 (161)
T PF02655_consen 2 SDKLKTYKFLKELGIPVPTTLRDSEP------------E---PI-----DGPWVIKPRDGA-----------GGEGI-RI 49 (161)
T ss_dssp TSHHHHHHHHTTT-S--------EES------------S----------SSSEEEEESS-------------------B-
T ss_pred CCHHHHHHHHHccCCCCCCccccccc------------c---cc-----CCcEEEEeCCCC-----------CCCCe-EE
Confidence 58999999999999999955543321 0 01 369999999997 34444 24
Q ss_pred HhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCc---eEEEeeccCCC-CCCeeeecCCCCceeeeee-
Q 001673 175 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPV-VDGVVMRNPDGKEVRYPVL- 249 (1033)
Q Consensus 175 frkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~---~vhAe~RKSPv-vDG~vrrN~hgke~r~~v~- 249 (1033)
++.- .+... . .....|+||||+ |+-.-+.++... .+-+..|+-=. -++.|+ .+|++ .+..
T Consensus 50 ~~~~----~~~~~---~--~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~---~~G~~-~~~~~ 114 (161)
T PF02655_consen 50 VDSE----DELEE---F--LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFR---YCGGI-VPADT 114 (161)
T ss_dssp -SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TE---EEEEE-ES---
T ss_pred ECCc----hhhcc---c--cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceee---ecccc-cccCC
Confidence 4322 11111 0 111129999997 555555444322 33344444310 011121 12222 2333
Q ss_pred -CCHHHHHHHHHHHHHh-CC-eeeeEeeeeeCCCeEEEeec
Q 001673 250 -LTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVN 287 (1033)
Q Consensus 250 -Lt~~Ek~iA~k~~~af-gq-~VCGfDLLRs~g~s~V~DVN 287 (1033)
..++=..+|.+++++| |+ -.+|||++...+++||+|||
T Consensus 115 ~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEIN 155 (161)
T PF02655_consen 115 PLKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEIN 155 (161)
T ss_dssp -HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEE
T ss_pred chHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEc
Confidence 3455567889999999 76 59999999999999999999
No 45
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.63 E-value=5.1e-08 Score=113.39 Aligned_cols=204 Identities=16% Similarity=0.201 Sum_probs=119.7
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcE-EEEeccCCCcccccccc
Q 001673 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRY-ALVNREVPYQELDYFIE 131 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~-~~~~rd~p~~~~~~~~e 131 (1033)
.+|++++.|+ |-. -...+.++..+ +|+-++.+...+++||....++|.++|||+|.. .....+. ..+
T Consensus 73 ~iDaI~pg~g--~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~-------~~~ 143 (478)
T PRK08463 73 GADAIHPGYG--FLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSES-------MEE 143 (478)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCC-------HHH
Confidence 4789998763 421 12445566666 445588999999999999999999999999774 3322110 001
Q ss_pred cCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee
Q 001673 132 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (1033)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~D 210 (1033)
..+.+. .++.|+|+||.+|. -.+|++-.... .....|+... ++ ....-.++.++.|+||.. +..
T Consensus 144 ~~~~~~----~igyPvvvKP~~ggGg~Gv~iv~~~~---eL~~a~~~~~---~~----a~~~~~~~~vlvEefI~~-~~~ 208 (478)
T PRK08463 144 IKIFAR----KIGYPVILKASGGGGGRGIRVVHKEE---DLENAFESCK---RE----ALAYFNNDEVFMEKYVVN-PRH 208 (478)
T ss_pred HHHHHH----HhCCCEEEEeCCCCCCCceEEeCCHH---HHHHHHHHHH---HH----HHHhcCCCcEEEEecCCC-CeE
Confidence 111221 23479999999985 12222222111 1111222110 00 001113567999999974 555
Q ss_pred eEEEEECC---ceEEEeeccCCCCCCeeeecCCCCceeeee-eCCHHHHH----HHHHHHHHhCCeeee-EeeeeeC-CC
Q 001673 211 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEKQ----MAREVCIAFRQAVCG-FDLLRCE-GR 280 (1033)
Q Consensus 211 VKvytVGp---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v-~Lt~~Ek~----iA~k~~~afgq~VCG-fDLLRs~-g~ 280 (1033)
+-+-++|. +++|...|...+ .+++..--+.. |. .|+++.++ +|.++++++|..-|| +|++-.. |+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~ 283 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR 283 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCC
Confidence 66555543 466666554321 12221111221 22 47776664 889999999987666 9999874 88
Q ss_pred eEEEeecC
Q 001673 281 SYVCDVNG 288 (1033)
Q Consensus 281 s~V~DVNG 288 (1033)
+||||||.
T Consensus 284 ~y~iEiN~ 291 (478)
T PRK08463 284 FYFMEMNT 291 (478)
T ss_pred EEEEEEEC
Confidence 99999993
No 46
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.63 E-value=1e-07 Score=108.10 Aligned_cols=203 Identities=16% Similarity=0.215 Sum_probs=115.8
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001673 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d 134 (1033)
+|++|+.. ..++ ..+.+.++..+ |++-++..+-.+.+||....++|+++|||+|++..+... . +...
T Consensus 65 id~vi~~~--e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~--~-------~~~~ 133 (423)
T TIGR00877 65 IDLAVIGP--EAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP--E-------EALS 133 (423)
T ss_pred CCEEEECC--chHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH--H-------HHHH
Confidence 67777643 2344 34667788888 666688889999999999999999999999999888651 0 1112
Q ss_pred eEEEcceecCCC-EEEeeccccC-cceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001673 135 FVEVHGNRFWKP-FVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (1033)
Q Consensus 135 ~I~v~G~~~~kP-fVeKpv~ged-Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVK 212 (1033)
.+. .++.| +|+||..|.. .++++..... -....+++.-+.+ +. +.+..+|+||||+ |..+-
T Consensus 134 ~~~----~~g~P~~VvKp~~~~gg~Gv~~v~~~~---el~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~s 196 (423)
T TIGR00877 134 YIQ----EKGAPAIVVKADGLAAGKGVIVAKTNE---EAIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVS 196 (423)
T ss_pred HHH----hcCCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEE
Confidence 222 13469 9999998751 2222221110 0111222211110 10 1245799999997 45554
Q ss_pred EEEE--CCceEE-EeeccC-CCCCCeeeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhC------CeeeeEeeee
Q 001673 213 VYTV--GPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLR 276 (1033)
Q Consensus 213 vytV--Gp~~vh-Ae~RKS-PvvDG~vrrN~hgke~r~~v-~Lt~~-----Ek~iA~k~~~afg------q~VCGfDLLR 276 (1033)
|-++ |..+.. ..+|.- ...+|..--++.|-+.-.|. .|+++ .++++.++.++++ ..++.+|+..
T Consensus 197 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~ 276 (423)
T TIGR00877 197 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML 276 (423)
T ss_pred EEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE
Confidence 4443 543332 122211 11222211122121222222 35443 2456666777774 4678899999
Q ss_pred eCCCeEEEeec
Q 001673 277 CEGRSYVCDVN 287 (1033)
Q Consensus 277 s~g~s~V~DVN 287 (1033)
+.+++||||+|
T Consensus 277 t~~g~~viEin 287 (423)
T TIGR00877 277 TKEGPKVLEFN 287 (423)
T ss_pred ECCCcEEEEEE
Confidence 98889999999
No 47
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.63 E-value=4.8e-08 Score=114.51 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=121.6
Q ss_pred CcCeeeccccCCCchH--HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccccc
Q 001673 56 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~--kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~ 132 (1033)
.+|++++.| ||..+ ...+.++..+ ||+-++.+...++.||....++|+++|||+|+.....-..+ .+.
T Consensus 74 ~~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~-------~e~ 144 (499)
T PRK08654 74 GADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDI-------EEA 144 (499)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCH-------HHH
Confidence 368899876 34332 3455666666 56778899999999999999999999999987654311000 011
Q ss_pred CCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001673 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (1033)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVK 212 (1033)
...+. .++.|+|+||.+|.. ...|+.-.+.- -....|+... ++-. ..+ .++.++.|+||. ++..+-
T Consensus 145 ~~~a~----~igyPvvIKp~~GgG-G~Gv~iv~~~~-eL~~a~~~~~---~~a~---~~f-~~~~v~vE~~I~-~~r~ie 210 (499)
T PRK08654 145 KEIAE----EIGYPVIIKASAGGG-GIGMRVVYSEE-ELEDAIESTQ---SIAQ---SAF-GDSTVFIEKYLE-KPRHIE 210 (499)
T ss_pred HHHHH----HhCCCEEEEeCCCCC-CCeEEEeCCHH-HHHHHHHHHH---HHHH---HhC-CCCeEEEEeCCC-CCcEEE
Confidence 11121 234799999999861 11111111100 1111222110 0000 011 156799999996 356677
Q ss_pred EEEECC---ceEEEeeccCCCCCCeeeecCCCCceee-e-eeCCHHH----HHHHHHHHHHhCCeeee-EeeeeeCCCeE
Q 001673 213 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRY-P-VLLTPNE----KQMAREVCIAFRQAVCG-FDLLRCEGRSY 282 (1033)
Q Consensus 213 vytVGp---~~vhAe~RKSPvvDG~vrrN~hgke~r~-~-v~Lt~~E----k~iA~k~~~afgq~VCG-fDLLRs~g~s~ 282 (1033)
|-++|. +++|.-.|...+ -+| |+|-+-+ | ..|+++- +++|.++++++|..=+| ||++-.+|++|
T Consensus 211 Vqvl~d~~G~vv~l~~recsi----qrr--~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~y 284 (499)
T PRK08654 211 IQILADKHGNVIHLGDRECSI----QRR--HQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFY 284 (499)
T ss_pred EEEEEcCCCCEEEEeeecccc----ccC--ccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcEE
Confidence 766653 466665555321 122 2332211 2 2366643 46789999999988666 99998899999
Q ss_pred EEeecC
Q 001673 283 VCDVNG 288 (1033)
Q Consensus 283 V~DVNG 288 (1033)
|||||.
T Consensus 285 flEiNp 290 (499)
T PRK08654 285 FLEMNT 290 (499)
T ss_pred EEEEEC
Confidence 999993
No 48
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.63 E-value=8.9e-08 Score=120.92 Aligned_cols=198 Identities=18% Similarity=0.270 Sum_probs=127.2
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001673 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d 134 (1033)
.+|.+|+.++.-.++ .+-..++..+ |+.-|+.+....+.||.+..++|+++|||+|++..+... .+..+
T Consensus 629 ~idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~---------ee~~~ 698 (1050)
T TIGR01369 629 KPEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV---------EEAVE 698 (1050)
T ss_pred CCCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH---------HHHHH
Confidence 478999888765544 2233445555 445689999999999999999999999999999988751 01222
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC-CCeeeE
Q 001673 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 212 (1033)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~-~G~DVK 212 (1033)
.+. .++.|+|+||..|. -.++.+.+... -.+..++..- ....++.+|.||||+. .--+|-
T Consensus 699 ~~~----~igyPvIVKP~~~~Gg~gv~iv~~~e---eL~~~l~~a~-----------~~s~~~~vlVeefI~~G~E~~Vd 760 (1050)
T TIGR01369 699 FAS----EIGYPVLVRPSYVLGGRAMEIVYNEE---ELRRYLEEAV-----------EVSPEHPVLIDKYLEDAVEVDVD 760 (1050)
T ss_pred HHH----hcCCCEEEEECCCCCCCCeEEECCHH---HHHHHHHHHH-----------HhCCCCCEEEeecCCCCeEEEEE
Confidence 222 12479999998874 12233222111 0111111110 1124567999999974 456788
Q ss_pred EEEECCceEEEe--eccCCCCCCeeeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhCC-eeeeEeeeeeCCCeE
Q 001673 213 VYTVGPEYAHAE--ARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSY 282 (1033)
Q Consensus 213 vytVGp~~vhAe--~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~----Ek~iA~k~~~afgq-~VCGfDLLRs~g~s~ 282 (1033)
++..|++++... .+. .+.+.|.|... +|. .|+++ =+++|.++++++|. .+|.||++...+++|
T Consensus 761 ~l~d~g~v~i~~i~e~~-------~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~y 833 (1050)
T TIGR01369 761 AVSDGEEVLIPGIMEHI-------EEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVY 833 (1050)
T ss_pred EEEeCCEEEEEEEEEee-------cccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEE
Confidence 888887665432 211 12345555543 232 67764 35678999999985 445589999999999
Q ss_pred EEeecC
Q 001673 283 VCDVNG 288 (1033)
Q Consensus 283 V~DVNG 288 (1033)
|+|||.
T Consensus 834 vIEvNp 839 (1050)
T TIGR01369 834 VIEVNP 839 (1050)
T ss_pred EEEEeC
Confidence 999994
No 49
>PRK08462 biotin carboxylase; Validated
Probab=98.61 E-value=1.1e-07 Score=108.85 Aligned_cols=197 Identities=18% Similarity=0.293 Sum_probs=116.8
Q ss_pred CcCeeeccccCCC-ch-HHHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCccccccc
Q 001673 56 ICDCLIAFYSSGY-PL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 130 (1033)
Q Consensus 56 ~~D~lIsf~s~gf-pl-~kai~y~~lr~p-~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~rd~p~~~~~~~~ 130 (1033)
.+|+++|-++ | .. ....+.++..+. |+-++.++..+++||....++|.++|||+|.+.. +.. . .
T Consensus 76 ~~D~i~pg~g--~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~-~--------~ 144 (445)
T PRK08462 76 EADAIFPGYG--FLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS-Y--------E 144 (445)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC-H--------H
Confidence 4889998774 3 11 233346777774 6789999999999999999999999999988653 221 0 0
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccC---C-ccccccccceEEeeccCC
Q 001673 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP---D-VRRVRREGSYIYEEFMPT 206 (1033)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p---~-~~~~r~~gsyIyEEFi~~ 206 (1033)
+..+.+. .++-|+|+||.+|. .|.|++ +.+....-...|.- + ...+ .++.+|.||||..
T Consensus 145 ~~~~~~~----~~g~PvvvKP~~g~-----------gs~Gv~-~v~~~~eL~~~~~~~~~~~~~~~-~~~~vlvEe~i~g 207 (445)
T PRK08462 145 EAKKIAK----EIGYPVILKAAAGG-----------GGRGMR-VVEDESDLENLYLAAESEALSAF-GDGTMYMEKFINN 207 (445)
T ss_pred HHHHHHH----HcCCCEEEEeCCCC-----------CCCCeE-EECCHHHHHHHHHHHHHHHHhcc-CCCcEEEeccCCC
Confidence 1111121 23469999999986 444542 22211110011100 0 0011 2567999999964
Q ss_pred CCeeeEEEEECC---ceEEEeeccCCCCCCeeeecCCCCce-eeee-eCCH----HHHHHHHHHHHHhCCe-eeeEeeee
Q 001673 207 GGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPV-LLTP----NEKQMAREVCIAFRQA-VCGFDLLR 276 (1033)
Q Consensus 207 ~G~DVKvytVGp---~~vhAe~RKSPvvDG~vrrN~hgke~-r~~v-~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLR 276 (1033)
+..+.|.++|. ++++.-.|...+ .++ |.+-+ ..|. .|++ +=+++|.++++++|.. ++-||++-
T Consensus 208 -~~e~~v~v~~~~~g~~~~~g~~~~~~----~~~--~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~ 280 (445)
T PRK08462 208 -PRHIEVQILGDKHGNVIHVGERDCSL----QRR--HQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLL 280 (445)
T ss_pred -CeEEEEEEEECCCCCEEEEEeccccc----eec--ccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEE
Confidence 55577766643 444442222210 111 11111 1122 4665 3356889999999985 33499987
Q ss_pred e-CCCeEEEeec
Q 001673 277 C-EGRSYVCDVN 287 (1033)
Q Consensus 277 s-~g~s~V~DVN 287 (1033)
. +|++||||||
T Consensus 281 ~~~g~~~viEiN 292 (445)
T PRK08462 281 DSNLDFYFMEMN 292 (445)
T ss_pred eCCCCEEEEEEE
Confidence 7 4689999999
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.60 E-value=6e-08 Score=111.04 Aligned_cols=206 Identities=14% Similarity=0.134 Sum_probs=115.1
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccccc
Q 001673 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEE 132 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~rd~p~~~~~~~~e~ 132 (1033)
.||++|+.++--.--..+.+.++..+ ||+.++.++-.+++||....++|+++|||+|.+. .++.. . +.
T Consensus 74 ~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~--~-------~~ 144 (451)
T PRK08591 74 GADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDE--E-------EA 144 (451)
T ss_pred CCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCH--H-------HH
Confidence 48999997742211123455667667 4677999999999999999999999999998864 33220 0 11
Q ss_pred CCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001673 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (1033)
Q Consensus 133 ~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVK 212 (1033)
.+.+. .++-|+|+||++|.. ...|+.-.+.. -....++.....+ . ....+..+++||||+. +..+-
T Consensus 145 ~~~~~----~~g~PvvvKP~~g~g-s~Gv~iv~~~~-el~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e~~ 210 (451)
T PRK08591 145 LAIAK----EIGYPVIIKATAGGG-GRGMRVVRTEA-ELEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRHIE 210 (451)
T ss_pred HHHHH----HcCCCEEEEECCCCC-CceEEEECCHH-HHHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcEEE
Confidence 11111 234799999999861 12222221111 1111222210000 0 0002457899999964 44455
Q ss_pred EEEEC---CceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCe-eeeEeeeee-CCCeEE
Q 001673 213 VYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYV 283 (1033)
Q Consensus 213 vytVG---p~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs-~g~s~V 283 (1033)
+-++| +++++.-.|... ..+++..-.+..-...|++ +=.++|.++++++|.. ++.||++.. +|++||
T Consensus 211 v~v~~d~~g~~~~~~~~~~~----~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~v 286 (451)
T PRK08591 211 IQVLADGHGNAIHLGERDCS----LQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYF 286 (451)
T ss_pred EEEEEcCCCCEEEEeccccc----ceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEE
Confidence 44443 345554222211 0010000000010123554 3346789999999975 344999988 788999
Q ss_pred EeecC
Q 001673 284 CDVNG 288 (1033)
Q Consensus 284 ~DVNG 288 (1033)
+|||.
T Consensus 287 iEINp 291 (451)
T PRK08591 287 IEMNT 291 (451)
T ss_pred EEEEC
Confidence 99994
No 51
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.53 E-value=1.6e-07 Score=103.00 Aligned_cols=187 Identities=24% Similarity=0.287 Sum_probs=120.4
Q ss_pred CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEecc
Q 001673 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (1033)
Q Consensus 86 Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~ 165 (1033)
|+-..-.++.||....+++.+.|||+|..++..... -.........++....-...-..+||.||..|.
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~---------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRD-YFDLREQHSIEDLEEFLRKHAPDRFVIKPANGS---------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccce-EEecccccCHHHHHHHHHhccCCcEEEEeCCCC----------
Confidence 888888999999999999999999999955522210 000000011112211111101269999999997
Q ss_pred CCCChHHHHHhhhCCCcccccCCcc----cccccc--ceEEeeccCC---------CC-eeeEEEEE----CCceEEEee
Q 001673 166 SAGGGMKELFRKVGNRSSEFHPDVR----RVRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHAEA 225 (1033)
Q Consensus 166 ~~GgG~~~Lfrkign~sS~~~p~~~----~~r~~g--syIyEEFi~~---------~G-~DVKvytV----Gp~~vhAe~ 225 (1033)
+|.|+. ++...+. ..+..+.. .....+ .||+||||.- .+ -+|||.|+ ++.++.|+.
T Consensus 85 -~G~Gi~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~l 160 (285)
T PF14397_consen 85 -GGKGIL-VIDRRDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAML 160 (285)
T ss_pred -CccCEE-EEEeecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEE
Confidence 666664 2222221 11111111 112222 8999999863 12 68999999 346789999
Q ss_pred ccCCCCCCeeeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-CCeee
Q 001673 226 RKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQAVC 270 (1033)
Q Consensus 226 RKSPvvDG~vrrN~hgke~r~~v~Lt----------------------------------~~Ek~iA~k~~~af-gq~VC 270 (1033)
|-+ ..|...-|.|.|++...|-+. ++=.++|.++++.| ++.+.
T Consensus 161 Rlg--~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~i 238 (285)
T PF14397_consen 161 RLG--RGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYI 238 (285)
T ss_pred EeC--CCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeE
Confidence 999 477777788877666554332 23356788888877 57999
Q ss_pred eEeeeeeCCCeEEEeecCc
Q 001673 271 GFDLLRCEGRSYVCDVNGW 289 (1033)
Q Consensus 271 GfDLLRs~g~s~V~DVNGw 289 (1033)
|+|+.=+..||+++|.|..
T Consensus 239 GWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 239 GWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred EEEEEEcCCCcEEEEeeCC
Confidence 9999999888999999943
No 52
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.52 E-value=2.2e-07 Score=107.30 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=123.6
Q ss_pred cCeeeccccCCCchH-HHHHHHHHcCCcc-cCCcchhhHHhhHHHHHHHHHhCCCCCCcEE-EEeccCCCcccccccccC
Q 001673 57 CDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 133 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p~~-lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~-~~~rd~p~~~~~~~~e~~ 133 (1033)
+|.+|+.. +-||. .....++..+..+ ..+.++-.+.+||....+.|.++|||+|.+. .+..+. +..
T Consensus 66 id~Vi~~~--d~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~---------e~~ 134 (435)
T PRK06395 66 VDIVFVGP--DPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEK---------DAA 134 (435)
T ss_pred CCEEEECC--ChHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChH---------HHH
Confidence 78888863 34663 3345666667554 4888899999999999999999999998543 332210 111
Q ss_pred C-eEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeE
Q 001673 134 D-FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (1033)
Q Consensus 134 d-~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVK 212 (1033)
. +..+ ..|+|+||..+. .|.|+.....+..+....++.-......++.+|+||||.-.=-.|=
T Consensus 135 ~~~~~~-----~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~E~Svd 198 (435)
T PRK06395 135 RDYITS-----MKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGEEFSLQ 198 (435)
T ss_pred HHHHhh-----CCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCceEEEE
Confidence 1 1122 369999999987 6778753321111111111100001134577999999964335566
Q ss_pred EEEECCceEEE-eecc-CCCCCCeeeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhCC------eeeeEeee
Q 001673 213 VYTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLL 275 (1033)
Q Consensus 213 vytVGp~~vhA-e~RK-SPvvDG~vrrN~hgke~r~-----~v~Lt~~Ek----~iA~k~~~afgq------~VCGfDLL 275 (1033)
+|+-|..+..- .++. =.+.||+.-=|+.|=+.-. +-.|++++. +|+.+++++++. -|..+++.
T Consensus 199 ~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~ 278 (435)
T PRK06395 199 AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFM 278 (435)
T ss_pred EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEE
Confidence 67766665222 1110 0123665544555434221 123777554 567788899994 45578888
Q ss_pred eeCCCeEEEeec
Q 001673 276 RCEGRSYVCDVN 287 (1033)
Q Consensus 276 Rs~g~s~V~DVN 287 (1033)
-+.+||||+|+|
T Consensus 279 lt~~gp~ViE~n 290 (435)
T PRK06395 279 DTPNGVKVIEIN 290 (435)
T ss_pred EeCCCcEEEEEe
Confidence 999999999999
No 53
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.49 E-value=6e-07 Score=102.65 Aligned_cols=203 Identities=13% Similarity=0.147 Sum_probs=113.4
Q ss_pred cCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001673 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl-~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d 134 (1033)
+|++++.++- .+. ..+...++..+ |+.-++.++-.+.+||....++|.++|||+|++.......+ .+..+
T Consensus 75 id~I~p~~~~-~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~-------~e~~~ 146 (450)
T PRK06111 75 AEAIHPGYGL-LSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDA-------EEAIA 146 (450)
T ss_pred CCEEEeCCCc-cccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCH-------HHHHH
Confidence 4778776521 111 22445666666 45668888899999999999999999999998632211110 01111
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001673 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1033)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1033)
.+. .++.|+|+||.+|. -+++++..... -....++........ ...++.+|.||||.- +..+-+
T Consensus 147 ~~~----~~~~P~VvKP~~g~gs~Gv~iv~~~~---el~~a~~~~~~~~~~-------~~~~~~~lvEe~i~g-~~e~~v 211 (450)
T PRK06111 147 IAR----QIGYPVMLKASAGGGGIGMQLVETEQ---ELTKAFESNKKRAAN-------FFGNGEMYIEKYIED-PRHIEI 211 (450)
T ss_pred HHH----HhCCCEEEEeCCCCCCceEEEECCHH---HHHHHHHHHHHHHHH-------hcCCCcEEEEcccCC-CcEEEE
Confidence 121 23469999999985 23343333221 122233322110000 012467999999973 344554
Q ss_pred EEEC---CceEEEeeccCCCCCCeeeecCCCCcee-eee-eCCH----HHHHHHHHHHHHhCC-eeeeEeeeeeCCC-eE
Q 001673 214 YTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SY 282 (1033)
Q Consensus 214 ytVG---p~~vhAe~RKSPvvDG~vrrN~hgke~r-~~v-~Lt~----~Ek~iA~k~~~afgq-~VCGfDLLRs~g~-s~ 282 (1033)
-+++ ++.++.-.|..++.. . |.+-.. .|. .+++ +=+++|.++++++|. .++.||++...++ +|
T Consensus 212 ~v~~~~~g~~~~~~~~~~~~~~----~--~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~ 285 (450)
T PRK06111 212 QLLADTHGNTVYLWERECSVQR----R--HQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFY 285 (450)
T ss_pred EEEEcCCCCEEEEEeecccccc----c--ccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEE
Confidence 4333 334444333322110 0 111000 011 1333 345788899999998 4777999988666 99
Q ss_pred EEeecC
Q 001673 283 VCDVNG 288 (1033)
Q Consensus 283 V~DVNG 288 (1033)
|||||.
T Consensus 286 viEiN~ 291 (450)
T PRK06111 286 FLEMNT 291 (450)
T ss_pred EEEEEC
Confidence 999994
No 54
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.48 E-value=3.5e-07 Score=105.24 Aligned_cols=198 Identities=17% Similarity=0.232 Sum_probs=113.7
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccc
Q 001673 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~rd~p~~~~~~~~ 130 (1033)
.||++++-++ |-- ....+.++..+ ||+.++.++..+++||....++|+++|||+|++. .+.. + .
T Consensus 74 ~id~I~pg~g--~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~--~-------~ 142 (449)
T TIGR00514 74 GADAIHPGYG--FLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVED--E-------E 142 (449)
T ss_pred CCCEEEeCCC--ccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCC--H-------H
Confidence 5899998762 211 11234556666 5678999999999999999999999999998764 2321 0 0
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc---cccccccceEEeeccCCC
Q 001673 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV---RRVRREGSYIYEEFMPTG 207 (1033)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~---~~~r~~gsyIyEEFi~~~ 207 (1033)
+..+... .++.|+|+||.+|. .|.|++ +.+....-...+.--. .....++.+|+||||+.
T Consensus 143 e~~~~~~----~ig~PvvvKP~~g~-----------gs~Gv~-~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g- 205 (449)
T TIGR00514 143 ENVRIAK----RIGYPVIIKATAGG-----------GGRGMR-VVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN- 205 (449)
T ss_pred HHHHHHH----HhCCCEEEEeCCCC-----------CCCccE-EECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-
Confidence 1111111 23479999999986 344442 2211110000010000 00012457999999953
Q ss_pred CeeeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhCCe-eeeEeeeee
Q 001673 208 GTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRC 277 (1033)
Q Consensus 208 G~DVKvytVG---p~~vhAe~RKSPvvDG~vrrN~hgke~r~--~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs 277 (1033)
+..+-+-+++ +++++...|-. .+.+. +++-+.+ +..|+++. +++|.++++++|.. ++.||++-+
T Consensus 206 ~~e~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~ 279 (449)
T TIGR00514 206 PRHVEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLD 279 (449)
T ss_pred CeEEEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEe
Confidence 4555554444 34444432211 11111 1221111 22466543 35688999999975 456999887
Q ss_pred -CCCeEEEeec
Q 001673 278 -EGRSYVCDVN 287 (1033)
Q Consensus 278 -~g~s~V~DVN 287 (1033)
+|.+||+|||
T Consensus 280 ~~g~~~viEiN 290 (449)
T TIGR00514 280 KNGEFYFMEMN 290 (449)
T ss_pred CCCCEEEEEEE
Confidence 6789999999
No 55
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.44 E-value=4.4e-06 Score=103.15 Aligned_cols=207 Identities=17% Similarity=0.236 Sum_probs=128.1
Q ss_pred CcCeeeccccCCCch-HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001673 56 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl-~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~ 133 (1033)
.+|++.+-..-++-. -....++++.+ ||+=.+..+..+..||..+-++|+++|||+|++..+.+..-. .+.+
T Consensus 526 ~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~------~~~~ 599 (809)
T PRK14573 526 KVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWK------REPE 599 (809)
T ss_pred cCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcc------cChH
Confidence 478776654322334 36788999998 677789999999999999999999999999999988752100 0000
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccceEEeeccCCCCeeeE
Q 001673 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (1033)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~~~G~DVK 212 (1033)
..+.---..++.|+|+||..+- .+.|+. ++.|.. ++..-+. .++-+..+|+|||+. +|..+-
T Consensus 600 ~~~~~~~~~lg~P~iVKP~~~G-----------sS~Gv~----~v~~~~-el~~a~~~a~~~~~~vlVEe~i~-~grEi~ 662 (809)
T PRK14573 600 LCLAHIVEAFSFPMFVKTAHLG-----------SSIGVF----EVHNVE-ELRDKISEAFLYDTDVFVEESRL-GSREIE 662 (809)
T ss_pred HHHHHHHHhcCCCEEEeeCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCcEEEEeccC-CCEEEE
Confidence 0010000124579999999974 233432 122211 1111111 122356689999985 578999
Q ss_pred EEEECCce---EEE--eeccCCCCCCee--eecC--CCC---ceeeeeeCCHH----HHHHHHHHHHHhCC-eeeeEeee
Q 001673 213 VYTVGPEY---AHA--EARKSPVVDGVV--MRNP--DGK---EVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (1033)
Q Consensus 213 vytVGp~~---vhA--e~RKSPvvDG~v--rrN~--hgk---e~r~~v~Lt~~----Ek~iA~k~~~afgq-~VCGfDLL 275 (1033)
|-++|..- +.+ ..+.. ..+.+ ..+- +|+ .+.+|..|+++ =+++|.++++++|. .+|.+|++
T Consensus 663 v~vl~~~~~~~~~~~~~e~~~--~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~ 740 (809)
T PRK14573 663 VSCLGDGSSAYVIAGPHERRG--SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFF 740 (809)
T ss_pred EEEEeCCCCceEeccceEEcc--CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEE
Confidence 99998642 221 12221 12222 1222 333 23456778764 35678899999995 46789988
Q ss_pred ee-CCCeEEEeec
Q 001673 276 RC-EGRSYVCDVN 287 (1033)
Q Consensus 276 Rs-~g~s~V~DVN 287 (1033)
=. +|.+||+|||
T Consensus 741 v~~~g~~yv~EiN 753 (809)
T PRK14573 741 LDEEGNFWLSEMN 753 (809)
T ss_pred EcCCCCEEEEEee
Confidence 76 5779999999
No 56
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.44 E-value=9e-07 Score=102.36 Aligned_cols=194 Identities=18% Similarity=0.210 Sum_probs=115.5
Q ss_pred CCch-HHHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecC
Q 001673 67 GYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 144 (1033)
Q Consensus 67 gfpl-~kai~y~~lr~p-~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~ 144 (1033)
-+|+ ..+.++++..+. +.-.+..+-.+.+||...-++|+++|||+|++..+... .+...++. .++
T Consensus 71 E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~---------~e~~~~~~----~~g 137 (434)
T PLN02257 71 EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP---------AAAKKYIK----EQG 137 (434)
T ss_pred chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH---------HHHHHHHH----HcC
Confidence 4566 456678877754 45577788899999999999999999999998877541 01222232 133
Q ss_pred CCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc--ccc-ccccceEEeeccCCCCeeeEEEE--ECCc
Q 001673 145 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRV-RREGSYIYEEFMPTGGTDVKVYT--VGPE 219 (1033)
Q Consensus 145 kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~--~~~-r~~gsyIyEEFi~~~G~DVKvyt--VGp~ 219 (1033)
.|+|+||..+. .|.|+. +.+........+..-. ..+ ..+..+|.||||. |..+-|.+ =|..
T Consensus 138 ~PvVVKp~~~~-----------~GkGV~-iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~ 203 (434)
T PLN02257 138 APIVVKADGLA-----------AGKGVV-VAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGEN 203 (434)
T ss_pred CCEEEEcCCCC-----------CCCCEE-EECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCc
Confidence 69999999775 455553 2222111111111000 011 1245799999997 44555533 2333
Q ss_pred eEEE-ee-ccCCCCCCeeeecCCCCceeeee-eCCHHHHH-HHHHH-------HHHhCCeeee---Eeeeee--CCCeEE
Q 001673 220 YAHA-EA-RKSPVVDGVVMRNPDGKEVRYPV-LLTPNEKQ-MAREV-------CIAFRQAVCG---FDLLRC--EGRSYV 283 (1033)
Q Consensus 220 ~vhA-e~-RKSPvvDG~vrrN~hgke~r~~v-~Lt~~Ek~-iA~k~-------~~afgq~VCG---fDLLRs--~g~s~V 283 (1033)
+..- +. ....+.||+..-|+.|-+.-.|. .++++..+ ++..+ .++.|....| +|++-+ +|++||
T Consensus 204 ~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~v 283 (434)
T PLN02257 204 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKL 283 (434)
T ss_pred EEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEE
Confidence 3321 11 12345788888888765544455 37774443 34332 3466666555 566554 567999
Q ss_pred Eeec
Q 001673 284 CDVN 287 (1033)
Q Consensus 284 ~DVN 287 (1033)
+|+|
T Consensus 284 LE~N 287 (434)
T PLN02257 284 LEYN 287 (434)
T ss_pred EEEE
Confidence 9999
No 57
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.43 E-value=2.8e-07 Score=116.94 Aligned_cols=199 Identities=20% Similarity=0.216 Sum_probs=120.6
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEE-eccCCCcccccccc
Q 001673 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 131 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~-~rd~p~~~~~~~~e 131 (1033)
.+|+++|-|| |-- ....+.++..+ +|+-++.+...+++||....++|.++|||+|..... ..+ ..+
T Consensus 74 ~iDaI~PGyG--flsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~--------~ee 143 (1143)
T TIGR01235 74 GVDAIHPGYG--FLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPET--------MEE 143 (1143)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCC--------HHH
Confidence 4688888653 321 12334455555 677788999999999999999999999999986532 111 001
Q ss_pred cCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCCCC
Q 001673 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGG 208 (1033)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~~G 208 (1033)
..+... .++.|+|+||..|. -|.|++ ..+....-...|+--.. ..-.++.+++|+||. ++
T Consensus 144 a~~~ae----~iGyPvIVKP~~GG-----------GGrG~r-iV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~ 206 (1143)
T TIGR01235 144 VLDFAA----AIGYPVIIKASWGG-----------GGRGMR-VVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RP 206 (1143)
T ss_pred HHHHHH----HcCCCEEEEECCCC-----------CCCccE-EeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CC
Confidence 111221 23479999999986 344542 22221111111110000 000246789999994 46
Q ss_pred eeeEEEEECC---ceEEEeeccCCCCCCeeeecCCCC--ceeeeeeCCHHH----HHHHHHHHHHhCCe-eeeEeeeee-
Q 001673 209 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGK--EVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRC- 277 (1033)
Q Consensus 209 ~DVKvytVGp---~~vhAe~RKSPvvDG~vrrN~hgk--e~r~~v~Lt~~E----k~iA~k~~~afgq~-VCGfDLLRs- 277 (1033)
..|.|-++|. +++|...|-.. +.|. |.| |..-...|+++. .++|.++++++|.. ++.||++-.
T Consensus 207 reIeVqVlgD~~G~vv~l~eRdcs-----vqrr-~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~ 280 (1143)
T TIGR01235 207 RHIEVQLLGDKHGNVVHLFERDCS-----VQRR-HQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN 280 (1143)
T ss_pred eEEEEEEEEeCCCCEEEEEecccc-----cccc-CceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC
Confidence 7788877765 46777666542 2221 222 222123566643 46789999999954 666999986
Q ss_pred CCCeEEEeec
Q 001673 278 EGRSYVCDVN 287 (1033)
Q Consensus 278 ~g~s~V~DVN 287 (1033)
+|++||+|||
T Consensus 281 dg~~yfIEVN 290 (1143)
T TIGR01235 281 DGKFYFIEVN 290 (1143)
T ss_pred CCcEEEEEee
Confidence 4689999999
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.39 E-value=8.4e-07 Score=112.46 Aligned_cols=195 Identities=13% Similarity=0.183 Sum_probs=121.9
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001673 56 ICDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d 134 (1033)
.+|.+|+-+|...++ ++-.-++..+ |+.-++.++...+.||.+..++|++.|||+|++..+... ++
T Consensus 630 ~~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~------------ee 696 (1068)
T PRK12815 630 NIKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE------------EE 696 (1068)
T ss_pred CCCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH------------HH
Confidence 378888877765433 2223344444 456688999999999999999999999999999988651 12
Q ss_pred eEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001673 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1033)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1033)
..... ..++.|+|+||..+. -.+++|.+... ..+..++.. ...+..+|.||||...--+|-+
T Consensus 697 ~~~~~-~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~ 759 (1068)
T PRK12815 697 AFAFA-KRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDA 759 (1068)
T ss_pred HHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEE
Confidence 11110 123479999999875 12233322211 111222211 1235679999999534455556
Q ss_pred EEECCceEE-E-eeccCCCCCCeeeecCCCCcee---eeeeCCHH----HHHHHHHHHHHhCC-eeeeEeeeeeCCCeEE
Q 001673 214 YTVGPEYAH-A-EARKSPVVDGVVMRNPDGKEVR---YPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 283 (1033)
Q Consensus 214 ytVGp~~vh-A-e~RKSPvvDG~vrrN~hgke~r---~~v~Lt~~----Ek~iA~k~~~afgq-~VCGfDLLRs~g~s~V 283 (1033)
+.=|..+.. + +.+.. +...|.|... .|..|+++ =+++|.++++++|. .++.||++..++++||
T Consensus 760 i~dg~~v~i~~i~e~~e-------~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yv 832 (1068)
T PRK12815 760 ISDGEDVTIPGIIEHIE-------QAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYV 832 (1068)
T ss_pred EEcCCceEEeeEEEEee-------ccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEE
Confidence 655554322 1 22111 1223555432 24567764 34678899999984 4677999999999999
Q ss_pred Eeec
Q 001673 284 CDVN 287 (1033)
Q Consensus 284 ~DVN 287 (1033)
||||
T Consensus 833 iEiN 836 (1068)
T PRK12815 833 LEVN 836 (1068)
T ss_pred EEEe
Confidence 9999
No 59
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.38 E-value=6e-07 Score=104.25 Aligned_cols=202 Identities=16% Similarity=0.178 Sum_probs=114.9
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEE--EEeccCCCccccccc
Q 001673 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 130 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~--~~~rd~p~~~~~~~~ 130 (1033)
.+|+++|.|+ |-- -...+.++..+ +|+-++.+...+++||....++|.++|||+|++. .+..
T Consensus 77 ~~daI~pg~g--~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~----------- 143 (467)
T PRK12833 77 GADAIHPGYG--FLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVAS----------- 143 (467)
T ss_pred CCCEEEECCC--ccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCC-----------
Confidence 4788998663 321 12234455555 6788899999999999999999999999998775 3322
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCee
Q 001673 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (1033)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~D 210 (1033)
.++....- ..++-|+|+||..|. -...++.-.+.- .....|+... ++-. ..+ .++.++.|+||+. |..
T Consensus 144 -~~e~~~~~-~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~e 211 (467)
T PRK12833 144 -LDAALEVA-ARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARH 211 (467)
T ss_pred -HHHHHHHH-HHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEE
Confidence 11111100 123479999999986 122222221110 1111121110 0000 011 2567899999975 566
Q ss_pred eEEEEECC--ceEEEeeccCCCCCCeeeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhCCe-eeeEeeeee--CC
Q 001673 211 VKVYTVGP--EYAHAEARKSPVVDGVVMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRC--EG 279 (1033)
Q Consensus 211 VKvytVGp--~~vhAe~RKSPvvDG~vrrN~hgke~--r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs--~g 279 (1033)
|-|-++|. .++|.-.|..- +.|. +.|-. .-+..|+++ =+++|.++++++|.. ++.||++-. +|
T Consensus 212 i~v~v~~dg~~~~~~~~~~~~-----~~r~-~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g 285 (467)
T PRK12833 212 IEVQILGDGERVVHLFERECS-----LQRR-RQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARG 285 (467)
T ss_pred EEEEEEeCCCcEEEEEEeecc-----cccC-CccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC
Confidence 66666665 34554433221 1110 11111 112246653 345889999999986 345898876 36
Q ss_pred CeEEEeecC
Q 001673 280 RSYVCDVNG 288 (1033)
Q Consensus 280 ~s~V~DVNG 288 (1033)
.+||+|||.
T Consensus 286 ~~~~iEvNp 294 (467)
T PRK12833 286 EFYFIEMNT 294 (467)
T ss_pred CEEEEEEEC
Confidence 799999994
No 60
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.38 E-value=1.2e-06 Score=104.54 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=118.9
Q ss_pred cCeeeccccCCCchHHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE
Q 001673 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I 136 (1033)
||++ ++-....+. .++++++..++.+.++.++..+.+||...-+.|+++|||+|++..+.... +....+
T Consensus 84 ~dvI-t~e~e~v~~-~~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~---------el~~~~ 152 (577)
T PLN02948 84 CDVL-TVEIEHVDV-DTLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLE---------SAEKAG 152 (577)
T ss_pred CCEE-EEecCCCCH-HHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHH---------HHHHHH
Confidence 5654 444444444 35588888887677899999999999999999999999999999886410 111112
Q ss_pred EEcceecCCCEEEeecccc--CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEE
Q 001673 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (1033)
Q Consensus 137 ~v~G~~~~kPfVeKpv~ge--dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvy 214 (1033)
. .++.|+|+||.+|. -.++++-.... .....++..+ ..+..+|.|+||+ ....+-|.
T Consensus 153 ~----~ig~P~VvKP~~ggs~g~Gv~~v~~~~---eL~~a~~~~~-------------~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 153 D----LFGYPLMLKSRRLAYDGRGNAVAKTEE---DLSSAVAALG-------------GFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred H----hcCCcEEEEeCCCCCCCCCeEEECCHH---HHHHHHHHhh-------------CCCCcEEEEecCC-CCeEEEEE
Confidence 1 23479999999753 23444333221 1122222221 1234689999994 23666666
Q ss_pred EECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCe-eeeEeeeeeCC-CeEEEe
Q 001673 215 TVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEG-RSYVCD 285 (1033)
Q Consensus 215 tVGp---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~iA~k~~~afgq~-VCGfDLLRs~g-~s~V~D 285 (1033)
+++. .+.. -|+++- +.++........|..|++ +=+++|.++++++|.. ++.+|+.-+.+ ..||+|
T Consensus 212 v~r~~~G~i~~-----~p~~E~-~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~E 285 (577)
T PLN02948 212 VARSRDGSTRC-----YPVVET-IHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNE 285 (577)
T ss_pred EEECCCCCEEE-----ecCccc-EEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEE
Confidence 6632 2221 353322 222211122235667776 3356788999999743 55789888754 579999
Q ss_pred ec
Q 001673 286 VN 287 (1033)
Q Consensus 286 VN 287 (1033)
||
T Consensus 286 In 287 (577)
T PLN02948 286 VA 287 (577)
T ss_pred Ee
Confidence 99
No 61
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.38 E-value=2e-06 Score=96.65 Aligned_cols=197 Identities=22% Similarity=0.279 Sum_probs=145.5
Q ss_pred CcCeeeccccCCCchHHHHHHHHHcCCcccC--CcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccC
Q 001673 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVN--ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~lr~p~~lN--dl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~ 133 (1033)
.+|+++|.+..-+ |.+-.+-|+..+.-++= +.++..++.||.+.|+.++++|||+|.+..++.- .+|...-
T Consensus 66 ~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~ 138 (329)
T PF15632_consen 66 GIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAY 138 (329)
T ss_pred CCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHH
Confidence 4678888777776 78888888888886554 6788999999999999999999999999998752 1122222
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcccc------------ccccceEEe
Q 001673 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYE 201 (1033)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~------------r~~gsyIyE 201 (1033)
..+...| +|+.+||..|. -|-|.++|-+....-...+.|+...+ ..--.+|+.
T Consensus 139 ~~l~~~~----~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvM 203 (329)
T PF15632_consen 139 EELRFPG----QPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVM 203 (329)
T ss_pred HhcCCCC----ceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEe
Confidence 3344454 69999999998 55566544444444444455443321 135678999
Q ss_pred eccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCe-eeeEeeee-eCC
Q 001673 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEG 279 (1033)
Q Consensus 202 EFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLR-s~g 279 (1033)
||++.-=--|=|..-++++++|-.|+=- | .+..+.-.++=-++|.++|++||++ +-+|.+-. .+|
T Consensus 204 eyL~G~EySVD~l~~~G~viaaV~R~K~-----------G--~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g 270 (329)
T PF15632_consen 204 EYLPGPEYSVDCLADEGRVIAAVPRRKL-----------G--RRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDG 270 (329)
T ss_pred cCCCCCeEEEEEEecCCEEEEEEEEEec-----------C--ceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCC
Confidence 9998844445566666888888877651 2 5566777788888999999999997 67899988 799
Q ss_pred CeEEEeec
Q 001673 280 RSYVCDVN 287 (1033)
Q Consensus 280 ~s~V~DVN 287 (1033)
+|+++|+|
T Consensus 271 ~p~LLEIN 278 (329)
T PF15632_consen 271 NPKLLEIN 278 (329)
T ss_pred CEEEEEeC
Confidence 99999999
No 62
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.28 E-value=2e-06 Score=109.13 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=120.7
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001673 56 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~ 129 (1033)
.+|++|+.++...+|.-++ ..++..+ ++.-.+..+..+.+||....++|.++|||+|++..++.. .
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--~------ 153 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSM--E------ 153 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCH--H------
Confidence 4799999887665554333 1356666 456689999999999999999999999999999988752 0
Q ss_pred cccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCC
Q 001673 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT 206 (1033)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~ 206 (1033)
+..+.+. .++-|+|+||..|. .|.|+. +.+ +.. ++..-+. .....+.+|+||||+-
T Consensus 154 -e~~~~~~----~ig~PvVVKP~~g~-----------gg~Gv~-iv~---~~e-eL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 154 -EALEVAE----EIGYPVIIRPSFTL-----------GGTGGG-IAY---NEE-ELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred -HHHHHHH----HcCCCeEEEcCCCC-----------CCCCeE-EEC---CHH-HHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 1112221 22369999999875 333432 211 111 1110000 0112467999999963
Q ss_pred CCeeeEEEEECC---ceE--EEeeccCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhCCe--eeeE
Q 001673 207 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGF 272 (1033)
Q Consensus 207 ~G~DVKvytVGp---~~v--hAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~E----k~iA~k~~~afgq~--VCGf 272 (1033)
. ..+-+-++.. +.+ ..+.+..| .| .|.+++. .|. .|++++ +++|.++++++|.. +|.|
T Consensus 213 ~-~Eisv~v~rd~~g~~~~~~~~e~~dp--~g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~v 284 (1066)
T PRK05294 213 W-KEYEYEVMRDKNDNCIIVCSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNV 284 (1066)
T ss_pred c-eEEEEEEEEcCCCCEEEEeeeeeccc--cc-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEE
Confidence 1 2333333211 111 12333333 12 2444442 233 578755 37899999999998 9999
Q ss_pred eeeee--CCCeEEEeec
Q 001673 273 DLLRC--EGRSYVCDVN 287 (1033)
Q Consensus 273 DLLRs--~g~s~V~DVN 287 (1033)
|+.-. +|..||+|||
T Consensus 285 ef~~~~~~g~~~viEiN 301 (1066)
T PRK05294 285 QFALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEEEECCCCcEEEEEee
Confidence 99876 3679999999
No 63
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.28 E-value=2.4e-06 Score=100.22 Aligned_cols=186 Identities=16% Similarity=0.167 Sum_probs=109.1
Q ss_pred HHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEE
Q 001673 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVE 149 (1033)
Q Consensus 72 kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~-v~G~~~~kPfVe 149 (1033)
+..+.++..+ ||+.-+..+-.+..||..+.++++++|||+|++..+..+. .++... +....++-|+|+
T Consensus 117 ~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVV 186 (493)
T PRK06524 117 ETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVV 186 (493)
T ss_pred HHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEE
Confidence 4455556666 5778999999999999999999999999999998764321 011111 111124579999
Q ss_pred eeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee--EEEEECC-ceEEEeec
Q 001673 150 KPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV--KVYTVGP-EYAHAEAR 226 (1033)
Q Consensus 150 Kpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DV--KvytVGp-~~vhAe~R 226 (1033)
||..|. .|.|+. ..+.. .++..-+...-.+..+++|+||. |.-+ =|++-+. .+++.-.+
T Consensus 187 KP~~GG-----------SS~GV~-~Vkn~----eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~ 248 (493)
T PRK06524 187 QTPYGD-----------SGSTTF-FVRGQ----RDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMT 248 (493)
T ss_pred EECCCC-----------CCcCEE-EeCCH----HHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEecccc
Confidence 999875 344442 11110 01110000000124578899985 4332 2343332 23221111
Q ss_pred cCCCCCCeeeecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhC----CeeeeEeeeee--CCCeEEEeec
Q 001673 227 KSPVVDGVVMRNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 287 (1033)
Q Consensus 227 KSPvvDG~vrrN~hgke---~r~~v~Lt~----~Ek~iA~k~~~afg----q~VCGfDLLRs--~g~s~V~DVN 287 (1033)
. ++-..++. ...++. ...|..|++ +=+++|.+++++++ ..+++||++-. +|+.|++|||
T Consensus 249 e-~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 249 S-LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred c-cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 1 11001222 112222 244778888 56678899999983 68899999987 5789999999
No 64
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.28 E-value=1.5e-06 Score=110.79 Aligned_cols=198 Identities=20% Similarity=0.228 Sum_probs=116.8
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEE--EeccCCCccccccc
Q 001673 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFI 130 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~--~~rd~p~~~~~~~~ 130 (1033)
.+|++++.| ||-- ....+-++..+ +|+-++.+...+++||....++|.++|||+|.... +... .
T Consensus 78 ~iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~---------e 146 (1146)
T PRK12999 78 GVDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDI---------E 146 (1146)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCH---------H
Confidence 478999865 3322 12233344444 56778999999999999999999999999976543 2210 0
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCCC
Q 001673 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTG 207 (1033)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~~ 207 (1033)
+..+... .++.|+|+||..|. .|.|++ +.+....-...|.--.+ ....++.+++|+||+ +
T Consensus 147 ea~~~a~----~iGyPvVVKP~~Gg-----------GGrGv~-vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g 209 (1146)
T PRK12999 147 EALEFAE----EIGYPIMLKASAGG-----------GGRGMR-IVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-N 209 (1146)
T ss_pred HHHHHHH----HhCCCEEEEECCCC-----------CCCCeE-EeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-C
Confidence 1111111 23479999999986 344442 22211100001110000 001256799999996 3
Q ss_pred CeeeEEEEEC---CceEEEeeccCCCCCCeeeecCCCCc--eeeeeeCCHHH----HHHHHHHHHHhCCee-eeEeeeee
Q 001673 208 GTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKE--VRYPVLLTPNE----KQMAREVCIAFRQAV-CGFDLLRC 277 (1033)
Q Consensus 208 G~DVKvytVG---p~~vhAe~RKSPvvDG~vrrN~hgke--~r~~v~Lt~~E----k~iA~k~~~afgq~V-CGfDLLRs 277 (1033)
+..|-|-++| ++++|--.|-.. +.|+ |.|- ..-...|+++. .++|.++++++|..= +.+|++-.
T Consensus 210 ~~~ieVqvl~D~~G~vv~l~erdcs-----vqrr-~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd 283 (1146)
T PRK12999 210 PRHIEVQILGDKHGNVVHLYERDCS-----VQRR-HQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVD 283 (1146)
T ss_pred CeEEEEEEEEECCCCEEEEEccccc-----eeec-CccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE
Confidence 4557666555 355665444332 2221 2332 22123577654 348899999999854 44999987
Q ss_pred C-CCeEEEeec
Q 001673 278 E-GRSYVCDVN 287 (1033)
Q Consensus 278 ~-g~s~V~DVN 287 (1033)
. |++|++|||
T Consensus 284 ~dg~~yfIEIN 294 (1146)
T PRK12999 284 ADGNFYFIEVN 294 (1146)
T ss_pred CCCCEEEEEEE
Confidence 4 589999999
No 65
>PLN02735 carbamoyl-phosphate synthase
Probab=98.21 E-value=4.5e-06 Score=106.28 Aligned_cols=201 Identities=13% Similarity=0.118 Sum_probs=126.1
Q ss_pred CCcCeeeccccCCCchHHHH-----HHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccc
Q 001673 55 PICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDY 128 (1033)
Q Consensus 55 P~~D~lIsf~s~gfpl~kai-----~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~ 128 (1033)
-.+|++|+-++...++.-++ .-++..+ |+.-++..+..+..||...-++|.++|||+|++..+....
T Consensus 97 e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~e------- 169 (1102)
T PLN02735 97 ERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLD------- 169 (1102)
T ss_pred hCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCHH-------
Confidence 36899999887666664333 2355666 6888999999999999999999999999999998886410
Q ss_pred ccccCCeEE-EcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC
Q 001673 129 FIEEEDFVE-VHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT 206 (1033)
Q Consensus 129 ~~e~~d~I~-v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~ 206 (1033)
+..+.+. +++ -|+|+||..|. -.+++|-+... -.+..++..- ....++.+|+||||.-
T Consensus 170 --ea~~~~~~iG~----yPvVVKP~~~~GG~Gv~iv~n~e---EL~~a~~~a~-----------~~s~~~~VLVEe~I~G 229 (1102)
T PLN02735 170 --ECFEIAEDIGE----FPLIIRPAFTLGGTGGGIAYNKE---EFETICKAGL-----------AASITSQVLVEKSLLG 229 (1102)
T ss_pred --HHHHHHHHhCC----CCEEEEeCCCCCCCceEEECCHH---HHHHHHHHHH-----------hcCCCCeEEEEEecCC
Confidence 1111221 331 69999999853 12333322211 1111111110 1124667899999963
Q ss_pred CCeeeEEEEECC---ce--EEEeeccCCCCCCeeeecCCCCcee--eee-eCCHHHH----HHHHHHHHHhCC--eeeeE
Q 001673 207 GGTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNEK----QMAREVCIAFRQ--AVCGF 272 (1033)
Q Consensus 207 ~G~DVKvytVGp---~~--vhAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~Ek----~iA~k~~~afgq--~VCGf 272 (1033)
..-+-|=+++. +. +-.+.+..| .| .|.+... .|. .|++++. .+|.+|++++|. .+|.+
T Consensus 230 -~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nV 301 (1102)
T PLN02735 230 -WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNV 301 (1102)
T ss_pred -CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEE
Confidence 24455555542 22 223444444 23 2434432 244 4787554 458999999997 58999
Q ss_pred eeeee--CCCeEEEeec-Cce
Q 001673 273 DLLRC--EGRSYVCDVN-GWS 290 (1033)
Q Consensus 273 DLLRs--~g~s~V~DVN-GwS 290 (1033)
|+.-. +|..||+||| ..|
T Consensus 302 qf~l~~~~g~~~ViEVNPR~s 322 (1102)
T PLN02735 302 QFAVNPVDGEVMIIEMNPRVS 322 (1102)
T ss_pred EEEEECCCCcEEEEEecCCCC
Confidence 99865 5789999999 455
No 66
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.18 E-value=1.9e-06 Score=90.30 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=97.6
Q ss_pred HHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCC
Q 001673 103 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 181 (1033)
Q Consensus 103 iL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~ 181 (1033)
+|+++|||||+++.+++.. ...+.+.-.=..++.|+|+||..+ +-.+|.+ -.+ ...|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~---------~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~--v~~----~~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNE---------DDSDSIEKILEDLGFPLFVKPASEGSSIGISK--VHN----EEELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTS---------HHHHHHHHHHHHHSSSEEEEESSTSTTTTEEE--ESS----HHHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEeccc---------ccchhHHHHHhhcCCCEEEEECCCCccEEEEE--cCC----HHHHHHHHHH-
Confidence 5889999999999999831 011111111123557999999986 3233322 111 1123322211
Q ss_pred cccccCCccccccccceEEeeccCCCCeeeEEEEEC---CceEEEeeccCCCCCCeeeec------CCCCceeeeeeCCH
Q 001673 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRN------PDGKEVRYPVLLTP 252 (1033)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG---p~~vhAe~RKSPvvDG~vrrN------~hgke~r~~v~Lt~ 252 (1033)
..+-+...|.|||| .|.++-|-++| ..+...+....+ ++.+.-+ ........|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 12346678999999 89999999999 666666666664 3443321 13344555667766
Q ss_pred H----HHHHHHHHHHHhCC-eeeeEeeeee-CCCeEEEeec---Cce
Q 001673 253 N----EKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVN---GWS 290 (1033)
Q Consensus 253 ~----Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~V~DVN---GwS 290 (1033)
+ =+++|.++.+++|. .+|=||+.=. +|.+||+||| |++
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGlt 178 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIPGLT 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-S
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCccccc
Confidence 4 35789999999997 7899998755 7889999999 664
No 67
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.18 E-value=8.2e-06 Score=88.51 Aligned_cols=166 Identities=22% Similarity=0.239 Sum_probs=124.6
Q ss_pred CcCe--eeccccCC--Cch-HHHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCccccccc
Q 001673 56 ICDC--LIAFYSSG--YPL-EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (1033)
Q Consensus 56 ~~D~--lIsf~s~g--fpl-~kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~ 130 (1033)
.||+ +|+--++| +.| ..+-+|++.-++ +..+.+..-|+|++|..|..+ +++|.|...-.
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~~----------- 136 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWAE----------- 136 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCcccccc-----------
Confidence 4554 34443444 334 356778777776 458999999999999999999 99999874221
Q ss_pred ccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC----
Q 001673 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---- 206 (1033)
Q Consensus 131 e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~---- 206 (1033)
.. +-+|+||.+|. +|.|.. |- .=. +++ .|-||||+-
T Consensus 137 -------~~-----~k~ViKp~dgC-----------gge~i~--~~-------~~~-------pd~-~i~qEfIeG~~lS 176 (307)
T COG1821 137 -------EP-----KKYVIKPADGC-----------GGEGIL--FG-------RDF-------PDI-EIAQEFIEGEHLS 176 (307)
T ss_pred -------CC-----ceEEecccccC-----------Ccceee--cc-------CCC-------cch-hhHHHhcCCcceE
Confidence 12 46999999998 666652 21 001 233 788999874
Q ss_pred ----CCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhC--CeeeeEeeeeeCCC
Q 001673 207 ----GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR--QAVCGFDLLRCEGR 280 (1033)
Q Consensus 207 ----~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afg--q~VCGfDLLRs~g~ 280 (1033)
.|++|.+.+|..+++.- +..++--.|+..++..+|+.+-.++|+++.+.++ -.-.||||+=+ +.
T Consensus 177 VSL~~GEkv~pLsvNrQfi~~---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~ 246 (307)
T COG1821 177 VSLSVGEKVLPLSVNRQFIIF---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DE 246 (307)
T ss_pred EEEecCCccccceechhhhhh---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CC
Confidence 58888888887776543 4566777899999999999999999999999987 34689999998 99
Q ss_pred eEEEeec
Q 001673 281 SYVCDVN 287 (1033)
Q Consensus 281 s~V~DVN 287 (1033)
|||+|||
T Consensus 247 pYvIEIN 253 (307)
T COG1821 247 PYVIEIN 253 (307)
T ss_pred cEEEEec
Confidence 9999999
No 68
>PLN02735 carbamoyl-phosphate synthase
Probab=98.16 E-value=3.3e-06 Score=107.43 Aligned_cols=196 Identities=14% Similarity=0.218 Sum_probs=121.1
Q ss_pred CcCeeeccccCCCchHHH---HHHHHHc----------CCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCC
Q 001673 56 ICDCLIAFYSSGYPLEKA---ESYATLR----------KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka---i~y~~lr----------~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p 122 (1033)
.+|++|+-||...|+.-| .+++... =+++..+.+...+..||.+.-++|+++|||+|++..+...
T Consensus 649 ~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~-- 726 (1102)
T PLN02735 649 RPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSE-- 726 (1102)
T ss_pred CCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCH--
Confidence 379999999987776322 2233322 2467889999999999999999999999999999877541
Q ss_pred CcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-c--cccccceE
Q 001673 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-R--VRREGSYI 199 (1033)
Q Consensus 123 ~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~--~r~~gsyI 199 (1033)
++...+- ..++.|+|+||..|- .|.|+. . +.|.. ++..-+. . ...++.+|
T Consensus 727 ----------eea~~~a-~~iGyPvvVKP~~g~-----------gG~G~~-i---V~~~e-eL~~al~~a~~~~~~~~vl 779 (1102)
T PLN02735 727 ----------ADALAIA-KRIGYPVVVRPSYVL-----------GGRAME-I---VYSDD-KLKTYLETAVEVDPERPVL 779 (1102)
T ss_pred ----------HHHHHHH-HhcCCCeEEEeCCCC-----------CCCcEE-E---ECCHH-HHHHHHHHHHHhcCCCCEE
Confidence 1111111 124579999999874 333432 1 11111 1110000 0 11355799
Q ss_pred EeeccCCCCeeeEEEEECC---ceEE--EeeccCCCCCCeeeecCCCCceeeee---eCCHHH----HHHHHHHHHHhCC
Q 001673 200 YEEFMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDGVVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ 267 (1033)
Q Consensus 200 yEEFi~~~G~DVKvytVGp---~~vh--Ae~RKSPvvDG~vrrN~hgke~r~~v---~Lt~~E----k~iA~k~~~afgq 267 (1033)
.|+||. +|.-+=|-+++. +++. .+.+.- +...|-++....+ .|+++. +++|.++++++|.
T Consensus 780 VEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~ 851 (1102)
T PLN02735 780 VDKYLS-DATEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNV 851 (1102)
T ss_pred EEEecC-CcEEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999995 466666665653 2221 111111 1223545444333 577655 4678999999985
Q ss_pred -eeeeEeeeee-CCCeEEEeecC
Q 001673 268 -AVCGFDLLRC-EGRSYVCDVNG 288 (1033)
Q Consensus 268 -~VCGfDLLRs-~g~s~V~DVNG 288 (1033)
.++.+|++-. +|++||+|||-
T Consensus 852 ~G~~~vqf~v~~dg~~yviEiNp 874 (1102)
T PLN02735 852 CGLMNCQYAITPSGEVYIIEANP 874 (1102)
T ss_pred cceeeEEEEEcCCCcEEEEEEeC
Confidence 4777999874 78899999993
No 69
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=1.3e-05 Score=89.82 Aligned_cols=189 Identities=17% Similarity=0.212 Sum_probs=134.7
Q ss_pred HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEE
Q 001673 71 EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVE 149 (1033)
Q Consensus 71 ~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVe 149 (1033)
..+..|++..+ ||+...+.+=...-|+-.+-++++..|+|++.++..+++... -+..+.+.. .+.-|+++
T Consensus 77 g~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~-----~~~~e~~~~----~l~~p~~V 147 (317)
T COG1181 77 GTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYS-----SVIVEEVEE----GLGFPLFV 147 (317)
T ss_pred chHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccch-----hHHHHHhhc----ccCCCEEE
Confidence 47788999998 999999999999999999999999999999999999985210 000111222 23589999
Q ss_pred eeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCC
Q 001673 150 KPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSP 229 (1033)
Q Consensus 150 Kpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSP 229 (1033)
||...- --+.|.-.++.|-|- +..+- ..+.+...+.|+|+. |..|.|=+.|... +++.-++
T Consensus 148 kp~~~g-SSvg~~~v~~~~d~~-----------~~~e~---a~~~d~~vl~e~~~~--~rei~v~vl~~~~--~~~~l~~ 208 (317)
T COG1181 148 KPAREG-SSVGRSPVNVEGDLQ-----------SALEL---AFKYDRDVLREQGIT--GREIEVGVLGNDY--EEQALPL 208 (317)
T ss_pred EcCCcc-ceeeEEEeeeccchH-----------HHHHH---HHHhCCceeeccCCC--cceEEEEecCCcc--cceecCc
Confidence 998742 234444444444443 22221 456788889999999 9999999999865 2222221
Q ss_pred --C-CCC-ee----eecCCCCceeee--eeCCH----HHHHHHHHHHHHhC-CeeeeEeeeeeC--CCeEEEeec
Q 001673 230 --V-VDG-VV----MRNPDGKEVRYP--VLLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVN 287 (1033)
Q Consensus 230 --v-vDG-~v----rrN~hgke~r~~--v~Lt~----~Ek~iA~k~~~afg-q~VCGfDLLRs~--g~s~V~DVN 287 (1033)
+ .+| .| ..|+++++..+. -.||+ +=+++|.+|.+|+| ..+||+|++-.. |..|++|||
T Consensus 209 ~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvN 283 (317)
T COG1181 209 GEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVN 283 (317)
T ss_pred eEEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEe
Confidence 0 133 33 267884443332 23676 45789999999999 999999999888 899999999
No 70
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.10 E-value=9.8e-06 Score=102.85 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=119.4
Q ss_pred CcCeeeccccCCCchHHH-----HHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001673 56 ICDCLIAFYSSGYPLEKA-----ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~ka-----i~y~~lr~p-~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~ 129 (1033)
.+|++++.++...++.-+ ..-++..+. ++-.+.++..+.+||....+.|.++|||+|++..+....
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-------- 152 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVE-------- 152 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHH--------
Confidence 579999988755555322 234666774 566889999999999999999999999999998886510
Q ss_pred cccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccc--cccceEEeeccCC
Q 001673 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVR--REGSYIYEEFMPT 206 (1033)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r--~~gsyIyEEFi~~ 206 (1033)
+..+... .++-|+|+||..|. .|.|+. + +.|.. ++..-+. ..+ ..+.+|.||||+-
T Consensus 153 -e~~~~~~----~igyPvIVKP~~g~-----------gg~Gv~-i---v~~~e-eL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 153 -EALAAAK----EIGYPVIVRPAFTL-----------GGTGGG-I---AYNRE-ELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred -HHHHHHH----HhCCCeEEECCCCC-----------CCCCeE-E---ECCHH-HHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 1111111 23469999999875 344442 1 11111 1110000 111 2357899999974
Q ss_pred -CCeeeEEEEEC-CceE--EEeeccCCCCCCeeeecCCCCce--eeee-eCCHHHH----HHHHHHHHHhCCe-eeeEee
Q 001673 207 -GGTDVKVYTVG-PEYA--HAEARKSPVVDGVVMRNPDGKEV--RYPV-LLTPNEK----QMAREVCIAFRQA-VCGFDL 274 (1033)
Q Consensus 207 -~G~DVKvytVG-p~~v--hAe~RKSPvvDG~vrrN~hgke~--r~~v-~Lt~~Ek----~iA~k~~~afgq~-VCGfDL 274 (1033)
.=-.+-|+.-+ ++.+ ..+.+--| .| .|-+++ -.|. .|++++. ++|.++++++|.. +|.||+
T Consensus 212 ~~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef 284 (1050)
T TIGR01369 212 WKEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQF 284 (1050)
T ss_pred ceEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEE
Confidence 11233333221 1222 22344444 22 232332 2344 3787554 5888899999985 788998
Q ss_pred eee--CCCeEEEeec
Q 001673 275 LRC--EGRSYVCDVN 287 (1033)
Q Consensus 275 LRs--~g~s~V~DVN 287 (1033)
.-. +|+.||+|||
T Consensus 285 ~l~~~~g~~~viEiN 299 (1050)
T TIGR01369 285 ALNPDSGRYYVIEVN 299 (1050)
T ss_pred EEECCCCcEEEEEee
Confidence 876 4679999999
No 71
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.09 E-value=1.2e-05 Score=92.95 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=112.8
Q ss_pred cCeeeccccCCCchHH-HHHHHHHcCCccc-CCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCC
Q 001673 57 CDCLIAFYSSGYPLEK-AESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl~k-ai~y~~lr~p~~l-Ndl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d 134 (1033)
+|++|+... -|+.. +...++..+..++ -+..+-.+.+||..+-++|.++|||+|++..++.. .+..+
T Consensus 69 iD~Vv~g~E--~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---------~ea~~ 137 (426)
T PRK13789 69 FDLIVVGPE--DPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---------SSSLS 137 (426)
T ss_pred CCEEEECCc--hHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---------HHHHH
Confidence 677775332 34433 3344566664332 23334457789999999999999999998877641 11222
Q ss_pred eEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc--ccc-ccccceEEeeccCCCCeee
Q 001673 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRV-RREGSYIYEEFMPTGGTDV 211 (1033)
Q Consensus 135 ~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~--~~~-r~~gsyIyEEFi~~~G~DV 211 (1033)
++. .+..|+|+||..+. .|.|+. +.+........+.--. ..+ ..+..+|.||||. |.-+
T Consensus 138 ~~~----~~~~PvVVKp~~~~-----------~gkGV~-vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~--G~E~ 199 (426)
T PRK13789 138 YLE----SEMLPIVIKADGLA-----------AGKGVT-VATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME--GQEA 199 (426)
T ss_pred HHH----hcCCCEEEEeCCCC-----------CCCcEE-EECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC--CeEE
Confidence 332 13469999999875 444542 2222111111111000 011 1234799999997 4444
Q ss_pred EEEEE--CCceEE---EeeccCCCCCCeeeecCCCCceeeeee-CCHHH-----HHHHHHHHHHh---C---CeeeeEee
Q 001673 212 KVYTV--GPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNE-----KQMAREVCIAF---R---QAVCGFDL 274 (1033)
Q Consensus 212 KvytV--Gp~~vh---Ae~RKSPvvDG~vrrN~hgke~r~~v~-Lt~~E-----k~iA~k~~~af---g---q~VCGfDL 274 (1033)
=|.++ |..+.. +...| ...||+-.-|+.|=+.-.|.. ++++. ++|+.++.+++ | .-|..+|+
T Consensus 200 Sv~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~ 278 (426)
T PRK13789 200 SIFAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGL 278 (426)
T ss_pred EEEEEECCCEEEEccceEecc-cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 44443 333221 22111 124666666777766666765 46632 23555566555 4 45677787
Q ss_pred eeeCCC-eEEEeecC
Q 001673 275 LRCEGR-SYVCDVNG 288 (1033)
Q Consensus 275 LRs~g~-s~V~DVNG 288 (1033)
.=+.+| +||+|+|-
T Consensus 279 ~it~~g~~~vlE~n~ 293 (426)
T PRK13789 279 MISPEGEPKVVEFNC 293 (426)
T ss_pred EEcCCCCEEEEEEec
Confidence 777655 99999994
No 72
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.92 E-value=2.7e-05 Score=100.12 Aligned_cols=203 Identities=18% Similarity=0.163 Sum_probs=114.8
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCc-EEEEeccCCCcccccccc
Q 001673 56 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIE 131 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~-~~~~~rd~p~~~~~~~~e 131 (1033)
.+|++|+-|+ |-- ....+.++..+ +|+-++.++..+++||....++|.++|||+|. +..+... . +
T Consensus 73 ~idaIiPG~g--flsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~--d-------e 141 (1201)
T TIGR02712 73 GAQAIHPGYG--FLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSL--D-------E 141 (1201)
T ss_pred CCCEEEeCCc--ccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCH--H-------H
Confidence 4678887663 321 23456677777 56778899999999999999999999999855 5444321 0 1
Q ss_pred cCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeee
Q 001673 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (1033)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DV 211 (1033)
..+.+. .++.|+|+||..|.. .+.++...+.- -....|+.+.+.+..+ + .+..+|.||||. +|.-+
T Consensus 142 a~~~a~----~igyPvVVKP~~ggG-G~GV~iv~~~e-EL~~a~~~~~~~~~~~------f-~~~~vlVEefI~-g~~ev 207 (1201)
T TIGR02712 142 ALEAAK----EIGYPVMLKSTAGGG-GIGMQKCDSAA-ELAEAFETVKRLGESF------F-GDAGVFLERFVE-NARHV 207 (1201)
T ss_pred HHHHHH----hcCCeEEEEECCCCC-CCCEEEECCHH-HHHHHHHHHHHHHHHh------c-CCCcEEEEecCC-CCEEE
Confidence 111111 234799999999861 12222221110 1222333321111000 0 134589999996 34567
Q ss_pred EEEEECC---ceEEEeeccCCCCCCeee-ecCCCCceeeeeeCCHH----HHHHHHHHHHHhCCe-eeeEeeeeeC--CC
Q 001673 212 KVYTVGP---EYAHAEARKSPVVDGVVM-RNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE--GR 280 (1033)
Q Consensus 212 KvytVGp---~~vhAe~RKSPvvDG~vr-rN~hgke~r~~v~Lt~~----Ek~iA~k~~~afgq~-VCGfDLLRs~--g~ 280 (1033)
-|.++|. .+++--.|-. .+. +|..--+..-...|+++ =.++|.++++++|.. ++.+|++-.. ++
T Consensus 208 eV~v~~Dg~g~vv~lg~rd~-----s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~ 282 (1201)
T TIGR02712 208 EVQIFGDGKGKVVALGERDC-----SLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDE 282 (1201)
T ss_pred EEEEEECCCCeEEEeeEEEe-----eeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCC
Confidence 7766652 3344322221 111 11111111111134543 345788889998865 7779999764 78
Q ss_pred eEEEeecC
Q 001673 281 SYVCDVNG 288 (1033)
Q Consensus 281 s~V~DVNG 288 (1033)
+||+|||.
T Consensus 283 ~y~lEVNp 290 (1201)
T TIGR02712 283 FYFLEVNT 290 (1201)
T ss_pred EEEEEEEC
Confidence 99999995
No 73
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.89 E-value=3.6e-05 Score=97.96 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=116.5
Q ss_pred CcCeeeccccCCCchHHHH-----HHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001673 56 ICDCLIAFYSSGYPLEKAE-----SYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai-----~y~~lr~p-~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~ 129 (1033)
.+|++|+.++....+.-++ ..++..+. +.-.+.++..+.+||....++|.++|||+|++..+....
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~e-------- 153 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVE-------- 153 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHH--------
Confidence 5899999887544453333 14566664 445788999999999999999999999999999887520
Q ss_pred cccCCeEEEcceecCCCEEEeecccc-CcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCC
Q 001673 130 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 208 (1033)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~ge-dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G 208 (1033)
+..+.+. .++-|+|+||..|- -.++++.+... -...+++..- .....+.+|.||||+-.
T Consensus 154 -e~~~~~~----~igyPvVVKP~~g~gG~Gv~iv~~~e---EL~~a~~~~~-----------~~s~~~~vLVEe~I~G~- 213 (1068)
T PRK12815 154 -EALAFAE----KIGFPIIVRPAYTLGGTGGGIAENLE---ELEQLFKQGL-----------QASPIHQCLLEESIAGW- 213 (1068)
T ss_pred -HHHHHHH----HcCCCEEEEECcCCCCCceEEECCHH---HHHHHHHHHH-----------hcCCCCeEEEEEccCCC-
Confidence 1112221 13369999999874 12222221110 0111111110 00123579999999631
Q ss_pred eeeEEEEECC---ceE--EEeeccCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhCC-eeeeEeee
Q 001673 209 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQ-AVCGFDLL 275 (1033)
Q Consensus 209 ~DVKvytVGp---~~v--hAe~RKSPvvDG~vrrN~hgke~r--~~v-~Lt~~E----k~iA~k~~~afgq-~VCGfDLL 275 (1033)
..+=+-++.. +++ .++.+..| .| .|.|..- .|. .|++++ +++|.++++++|. .+|.||+.
T Consensus 214 ~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~ 286 (1068)
T PRK12815 214 KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFA 286 (1068)
T ss_pred eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 2333333321 222 22223233 22 1222221 233 477764 4688899999998 47889987
Q ss_pred ee--CCCeEEEeec
Q 001673 276 RC--EGRSYVCDVN 287 (1033)
Q Consensus 276 Rs--~g~s~V~DVN 287 (1033)
-. +|++||+|||
T Consensus 287 l~~~~g~~~ViEIN 300 (1068)
T PRK12815 287 LDPKSKQYYLIEVN 300 (1068)
T ss_pred EECCCCcEEEEEEe
Confidence 65 3679999999
No 74
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.83 E-value=6.5e-05 Score=88.50 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=116.5
Q ss_pred cCeeeccccCCCchH-HHHHHHHHcCC-cccCCcchhhHHhhHHHHHHHHHhCCCCCC-cEEEEeccCCCcccccccccC
Q 001673 57 CDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVP-RYALVNREVPYQELDYFIEEE 133 (1033)
Q Consensus 57 ~D~lIsf~s~gfpl~-kai~y~~lr~p-~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P-~~~~~~rd~p~~~~~~~~e~~ 133 (1033)
+|++|+...+ |+. .+-..++..+. +.-++..+-.+.+||...-++|+++|||+| .+..++.. .+..
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~---------~ea~ 138 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDV---------EEAA 138 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCH---------HHHH
Confidence 6788874433 552 33345666664 445888888889999999999999999997 56555431 1222
Q ss_pred CeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCC-Cc----ccc----cC---Ccccc-ccccceEE
Q 001673 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGN-RS----SEF----HP---DVRRV-RREGSYIY 200 (1033)
Q Consensus 134 d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign-~s----S~~----~p---~~~~~-r~~gsyIy 200 (1033)
++++. + .|+|+||..+. .|.|+. +...... .+ ..+ +. ....+ ..+..+|.
T Consensus 139 ~~~~~----~-~PvVVKP~~~a-----------ggkGV~-iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlI 201 (486)
T PRK05784 139 KFIEY----G-GSVAIKPARQA-----------GGKGVK-VIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILV 201 (486)
T ss_pred HHHhh----c-CCEEEeeCCCC-----------CCCCEE-EECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEE
Confidence 23321 1 39999999987 666764 3322110 00 000 00 00111 23568999
Q ss_pred eeccCCCCeeeEEEEECCceEE-EeeccC-CCCCCeeeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhCCe-
Q 001673 201 EEFMPTGGTDVKVYTVGPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFRQA- 268 (1033)
Q Consensus 201 EEFi~~~G~DVKvytVGp~~vh-Ae~RKS-PvvDG~vrrN~hgke~r~~----v~-Lt~~E----k~iA~k~~~afgq~- 268 (1033)
||||.-.=-.|=+++-|..+.. ...+.- .+.+|..--|+.|=+.=.| +. +++++ .+++.++.++++..
T Consensus 202 EEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~ 281 (486)
T PRK05784 202 EEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKET 281 (486)
T ss_pred EEccCCeEEEEEEEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999842234445554544331 111111 1245666667766554333 22 34433 24577777777643
Q ss_pred ------eeeEeeeee-CCCeEEEeec
Q 001673 269 ------VCGFDLLRC-EGRSYVCDVN 287 (1033)
Q Consensus 269 ------VCGfDLLRs-~g~s~V~DVN 287 (1033)
++-+++.-+ .+||+|+|+|
T Consensus 282 g~~~~G~l~~elmlt~~~GP~vIE~n 307 (486)
T PRK05784 282 GERYVGVISGQMMLTELWGPTVIEYY 307 (486)
T ss_pred CCCcEEEEEEEEEEecCCCcEEEEEe
Confidence 445677778 9999999999
No 75
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=97.65 E-value=0.00011 Score=80.01 Aligned_cols=189 Identities=20% Similarity=0.271 Sum_probs=114.6
Q ss_pred HcCCcccCCcchhhHHhhHHHHHHHHHhCC-CC--CCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeecccc
Q 001673 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (1033)
Q Consensus 79 lr~p~~lNdl~~q~~l~DR~~vlqiL~~~g-Ip--~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~ge 155 (1033)
.++....|. -..|+|.+|+.|.+.. +. +|.|...... ......+.-- +-+.+||..|.
T Consensus 6 ~~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~---------~~l~~~L~~y-----~~vylKP~~Gs 66 (262)
T PF14398_consen 6 QKGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF---------EDLREMLNKY-----KSVYLKPDNGS 66 (262)
T ss_pred cCCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH---------HHHHHHHHHC-----CEEEEEeCCCC
Confidence 344555565 3479999999999864 44 7777766541 0223333323 35889999998
Q ss_pred CcceEEEeccCCCChHHHHHhhhCC-Cccccc------CCccccccccceEEeeccCC---CC--eeeEEEEEC--C---
Q 001673 156 DHSIMIYYPSSAGGGMKELFRKVGN-RSSEFH------PDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVG--P--- 218 (1033)
Q Consensus 156 dHni~IYyp~~~GgG~~~Lfrkign-~sS~~~------p~~~~~r~~gsyIyEEFi~~---~G--~DVKvytVG--p--- 218 (1033)
.+..|+.=...++|...-++.-+. ....|. .-+...-....||+|+.|+- +| -|+||++-= .
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 333333333322222100111111 000111 00111225669999999976 56 899999982 2
Q ss_pred ceEEEeeccCCCCCCeeeecCCCCceeeeee--CCH---------H----HHHHHHHHHHHhCC--eeeeEeeeee-CCC
Q 001673 219 EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL--LTP---------N----EKQMAREVCIAFRQ--AVCGFDLLRC-EGR 280 (1033)
Q Consensus 219 ~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~--Lt~---------~----Ek~iA~k~~~afgq--~VCGfDLLRs-~g~ 280 (1033)
.++...+|.++ .|.+-.|.++|+...++. |+. + =..+|..+.+.||- .-.|+||-=. +|+
T Consensus 146 ~vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~ 223 (262)
T PF14398_consen 146 QVTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGK 223 (262)
T ss_pred EEEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCC
Confidence 46778999997 999999999887765541 111 1 12344555566774 7889999655 899
Q ss_pred eEEEeecCc
Q 001673 281 SYVCDVNGW 289 (1033)
Q Consensus 281 s~V~DVNGw 289 (1033)
..++|||.=
T Consensus 224 iWliEvN~k 232 (262)
T PF14398_consen 224 IWLIEVNSK 232 (262)
T ss_pred EEEEEEeCC
Confidence 999999963
No 76
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.58 E-value=0.00015 Score=76.36 Aligned_cols=168 Identities=24% Similarity=0.327 Sum_probs=100.7
Q ss_pred CCcchhhHHhhHHHHH----HH---HHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcc
Q 001673 86 NELEPQHLLHDRRKVY----EQ---LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 158 (1033)
Q Consensus 86 Ndl~~q~~l~DR~~vl----qi---L~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHn 158 (1033)
|+|.+.+.+.||-=++ +| |-....|+=.-.+... ..+.+.-- ..|+|+|-=.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypn------------h~em~s~~----~fPvVvKvG~~h--- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPN------------HREMLSAP----RFPVVVKVGHAH--- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESS------------GGGGCS-S----SSSEEEEESS-S---
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCC------------hhhhccCC----CCCEEEEEcccc---
Confidence 7888888888883222 22 2233444322222221 23333222 369999986655
Q ss_pred eEEEeccCCCChHHHHHhhhCCCcccccCCcc-ccccccce-EEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeee
Q 001673 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (1033)
Q Consensus 159 i~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~-~~r~~gsy-IyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vr 236 (1033)
.|-|-. |+-|+...=| +. .+....+| -.|-||.. --|||+--+|++| -|+.|+|. .|--.
T Consensus 62 --------~G~GKv----kv~n~~~~qD--i~sll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 --------AGMGKV----KVDNQQDFQD--IASLLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp --------TTTTEE----EE-SHHHHHH--HHHHHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred --------CceeEE----EEccHHHHHH--HHHHHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 566642 4444432211 11 23333344 45667733 4799999999998 89999994 77777
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCeeeeEeeeee-CCCeEEEeecCcee
Q 001673 237 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRC-EGRSYVCDVNGWSF 291 (1033)
Q Consensus 237 rN~hgke~r~~v~Lt~~Ek~iA~k~~~af-gq~VCGfDLLRs-~g~s~V~DVNGwSF 291 (1033)
.|+ |-..-+.|.+|+..|.....+++.| |++|||+|.|-+ .|+=|++|||+=|+
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 776 6677789999999999999999999 999999999999 58899999997543
No 77
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.24 E-value=0.0024 Score=73.03 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=102.4
Q ss_pred HcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcc
Q 001673 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 158 (1033)
Q Consensus 79 lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHn 158 (1033)
+.-| +.-+..+....+||.+-.+.|.++|||+|+++ .. + ++ ++ .|+|+||..|.+ +
T Consensus 107 ~~~p-~~gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~~--~----------~~---i~-----~PvIVKp~~g~g-g 162 (358)
T PRK13278 107 FKVP-MFGNREILRWEADRDKERKLLEEAGIRIPRKY--ES--P----------ED---ID-----RPVIVKLPGAKG-G 162 (358)
T ss_pred CCCC-cCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEe--CC--H----------HH---cC-----CCEEEEeCCCCC-C
Confidence 4344 33355577888999999999999999999962 21 1 11 12 599999988753 3
Q ss_pred eEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEE---CCceEEEeeccCCC-CCCe
Q 001673 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGV 234 (1033)
Q Consensus 159 i~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytV---Gp~~vhAe~RKSPv-vDG~ 234 (1033)
-.++...+.. -....++.+-++. . +.....+|.||||.-.--.+=+|+. |.-...++.|+=-. .||.
T Consensus 163 kGv~i~~s~~-El~~~~~~l~~~~-~-------~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~ 233 (358)
T PRK13278 163 RGYFIAKSPE-EFKEKIDKLIERG-L-------ITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGL 233 (358)
T ss_pred CCeEEeCCHH-HHHHHHHHHHhcc-c-------cCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccce
Confidence 3444444322 1223333321111 1 1126789999999742233335654 66566666665433 5676
Q ss_pred eee--c---CCCCceeeeee------CC----HHHHHHHHHHHHH----h-CCeee--eEeeeee-CCCeEEEeecCc
Q 001673 235 VMR--N---PDGKEVRYPVL------LT----PNEKQMAREVCIA----F-RQAVC--GFDLLRC-EGRSYVCDVNGW 289 (1033)
Q Consensus 235 vrr--N---~hgke~r~~v~------Lt----~~Ek~iA~k~~~a----f-gq~VC--GfDLLRs-~g~s~V~DVNGw 289 (1033)
||- . ..+.+-.|++. +. ++=..++.+++++ + +..+| .+|.... ++..+|+|||+=
T Consensus 234 ~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R 311 (358)
T PRK13278 234 VRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISAR 311 (358)
T ss_pred eeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCc
Confidence 762 1 12233333333 22 3444566666666 5 55554 4566776 456799999873
No 78
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=97.01 E-value=0.0023 Score=72.08 Aligned_cols=153 Identities=24% Similarity=0.372 Sum_probs=99.9
Q ss_pred ccCCcc-hhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEE
Q 001673 84 LVNELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (1033)
Q Consensus 84 ~lNdl~-~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IY 162 (1033)
.=|+-. .-..+-.|.+-|+.|...|.|.|..--+ +.+..+ -+|.|+||++|.
T Consensus 108 ~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~----------------e~~~~g----ekt~IlKPv~Ga------- 160 (389)
T COG2232 108 AGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKI----------------EPLEEG----EKTLILKPVSGA------- 160 (389)
T ss_pred ccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhh----------------hhhhhc----ceeeEEeeccCC-------
Confidence 335555 6777888899999999999998754211 112223 379999999995
Q ss_pred eccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---------CCeeeEEEEECCceEEEeeccCCCCCC
Q 001673 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---------GGTDVKVYTVGPEYAHAEARKSPVVDG 233 (1033)
Q Consensus 163 yp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~---------~G~DVKvytVGp~~vhAe~RKSPvvDG 233 (1033)
| |. ++.+ .++.+. + -.-+|.||||+- +|.|....+|..+++- .-++ --+
T Consensus 161 -----G-G~---~el~-----~~~Ee~--~--~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~--~~~~--~~~ 218 (389)
T COG2232 161 -----G-GL---VELV-----KFDEED--P--PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID--GLRG--EYS 218 (389)
T ss_pred -----C-ce---eeec-----cccccc--C--CcceehhhhcCCceeEEEEEecCcceEEEEEeeeeec--cccc--ccc
Confidence 3 32 2322 121111 0 177899999972 6778888777776654 1111 000
Q ss_pred eeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCe-eeeEeeeeeCCCeEEEeec
Q 001673 234 VVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVN 287 (1033)
Q Consensus 234 ~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~-VCGfDLLRs~g~s~V~DVN 287 (1033)
-|+ --|-=+-+++....+=..+|..+..-||+. --|||+|=...||||+|||
T Consensus 219 ~f~--Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVN 271 (389)
T COG2232 219 QFV--YKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVN 271 (389)
T ss_pred cce--eccCcCCCcchhhHHHHHHHHHHHHHhccccccccceEeecCCcEEEEec
Confidence 011 114444555555555577999999999985 6799999999999999999
No 79
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=96.90 E-value=0.0018 Score=75.98 Aligned_cols=200 Identities=17% Similarity=0.186 Sum_probs=126.0
Q ss_pred CcCeeeccccCCCch--HHHHHHHHHcCCcccCCcc--hhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccc
Q 001673 56 ICDCLIAFYSSGYPL--EKAESYATLRKPFLVNELE--PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 131 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl--~kai~y~~lr~p~~lNdl~--~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e 131 (1033)
.+|+++|.|+ |-- .+..+-++..+ +++..-. ....+.||...=++++++|||+|... +++-.+ ..+
T Consensus 74 gadai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs----~~~~~~---~ee 143 (449)
T COG0439 74 GADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGS----DGAVAD---NEE 143 (449)
T ss_pred CCceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCC----CCCcCC---HHH
Confidence 5889999887 333 44555666666 5555444 45678899999999999999999987 221000 111
Q ss_pred cCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCcc---ccccccceEEeeccCC-C
Q 001673 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT-G 207 (1033)
Q Consensus 132 ~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~~-~ 207 (1033)
......- ++-|+|+||..|- -|.|++ +.+....-...|..-.. ..--++.++.|+|+.. .
T Consensus 144 ~~~~a~~----iGyPVivKa~~Gg-----------Gg~G~r-~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~r 207 (449)
T COG0439 144 ALAIAEE----IGYPVIVKAAAGG-----------GGRGMR-VVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPR 207 (449)
T ss_pred HHHHHHH----cCCCEEEEECCCC-----------CcccEE-EECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCc
Confidence 2222222 3379999999997 566763 55544222222221110 0113677999999976 3
Q ss_pred CeeeEEEEECC---ceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHH----HHHHHHHHhCCeeee-Eeeeee-C
Q 001673 208 GTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-E 278 (1033)
Q Consensus 208 G~DVKvytVGp---~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~----iA~k~~~afgq~VCG-fDLLRs-~ 278 (1033)
- |=+-+.|+ .++|.-.|-.. .=||+-.=.|..-...++++-+. .|.+++++.|-.-|| |.+|=. +
T Consensus 208 h--ievqv~gD~~g~~i~l~eRdcs----iqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~ 281 (449)
T COG0439 208 H--IEVQVLGDGHGNVIHLGERDCS----IQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSN 281 (449)
T ss_pred e--EEEEEEEcCcccEEEEEeccCC----CcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Confidence 4 34444444 56888888732 34555555566655566655543 467888888877777 777877 5
Q ss_pred CCeEEEeec
Q 001673 279 GRSYVCDVN 287 (1033)
Q Consensus 279 g~s~V~DVN 287 (1033)
|++|++|+|
T Consensus 282 ~~~yfiEmN 290 (449)
T COG0439 282 GEFYFIEMN 290 (449)
T ss_pred CCEEEEEEe
Confidence 999999999
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=96.75 E-value=0.00021 Score=75.80 Aligned_cols=161 Identities=22% Similarity=0.326 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHH
Q 001673 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (1033)
Q Consensus 96 DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lf 175 (1033)
||.++.+++.+.|||+|.....--+ +.++.+.+- +.++-|+++||..|- -|.|. +++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~a-~~iGyPVliKas~gg-----------GG~gm-~iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEFA-EEIGYPVLIKASAGG-----------GGRGM-RIV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHHH-HHH-SSEEEEETTSS-----------TTTSE-EEE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHHH-HhcCCceEEeecccc-----------ccccc-ccc
Confidence 7899999999999999988755111 112222211 124579999999885 33343 233
Q ss_pred hhhCCCcccccCCccccc------cccceEEeeccCC-CCeeeEEEEECC-ceEEEeeccCCCCCCeeeecCCCC--cee
Q 001673 176 RKVGNRSSEFHPDVRRVR------REGSYIYEEFMPT-GGTDVKVYTVGP-EYAHAEARKSPVVDGVVMRNPDGK--EVR 245 (1033)
Q Consensus 176 rkign~sS~~~p~~~~~r------~~gsyIyEEFi~~-~G~DVKvytVGp-~~vhAe~RKSPvvDG~vrrN~hgk--e~r 245 (1033)
+....-.+.+.. ..+ -++.+++|+|+.. .--+|-|..=|- +++|.-.|-. ...| -+|| ++.
T Consensus 58 ~~~~eL~~~~~~---~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~-----~~~~-hs~dsi~~~ 128 (211)
T PF02786_consen 58 HNEEELEEAFER---AQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGEREC-----SEQR-HSQDSIEEA 128 (211)
T ss_dssp SSHHHHHHHHHH---HHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEE-----EEEE-TTEEEEEEE
T ss_pred cchhhhhhhhhh---ccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeecc-----cccc-ccccceeEe
Confidence 322111112211 111 2788999999987 555555554433 4666666655 2223 2344 344
Q ss_pred eeeeCCHHHHH----HHHHHHHHhCC-eeeeEeeeee--CCCeEEEeecC
Q 001673 246 YPVLLTPNEKQ----MAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNG 288 (1033)
Q Consensus 246 ~~v~Lt~~Ek~----iA~k~~~afgq-~VCGfDLLRs--~g~s~V~DVNG 288 (1033)
-+..||+++++ +|.++|+++|. .+|-|-+|-. ++..||+|||=
T Consensus 129 P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp 178 (211)
T PF02786_consen 129 PAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP 178 (211)
T ss_dssp S-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES
T ss_pred eccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC
Confidence 45679987764 78899999996 4788999998 79999999994
No 81
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.55 E-value=0.03 Score=64.39 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCC--CChH-
Q 001673 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSA--GGGM- 171 (1033)
Q Consensus 95 ~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~--GgG~- 171 (1033)
+|++.-|++|.++||++|++.-. | + +++ .|+|+||..|. - |.|.
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~----p-----------~--eId-----~PVIVKp~~as-----------G~~srG~f 171 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKD----P-----------E--EID-----RPVIVKLPEAK-----------RRLERGFF 171 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecC----c-----------c--ccC-----ccEEEEECCCC-----------CccccCeE
Confidence 56788899999999999998841 1 1 234 59999999987 2 3333
Q ss_pred -----HHHHhhhCCCcccccCCcccc--ccccceEEeeccCCCCeeeEEEEE--CC--ceEEEeeccCCCCCCeeeecCC
Q 001673 172 -----KELFRKVGNRSSEFHPDVRRV--RREGSYIYEEFMPTGGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMRNPD 240 (1033)
Q Consensus 172 -----~~Lfrkign~sS~~~p~~~~~--r~~gsyIyEEFi~~~G~DVKvytV--Gp--~~vhAe~RKSPvvDG~vrrN~h 240 (1033)
..|.++....+ .. ..+ ....++++||||.-.--.+-+|.. -+ .++..-.|--=-+||.+|- ++
T Consensus 172 ~a~s~eEl~~~a~~l~---~~--g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~-pa 245 (366)
T PRK13277 172 TASSYEDFYEKSEELI---KA--GVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRL-PA 245 (366)
T ss_pred eeCCHHHHHHHHHhhh---hc--CcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeecccccccccccc-Ch
Confidence 11222210000 00 011 123567899999752233335544 33 4444554422227886662 21
Q ss_pred CC------cee------eeeeCC----HHHHHHHHHHHHHhCC-----eee--eEeeeee-CCCeEEEeecCceecccch
Q 001673 241 GK------EVR------YPVLLT----PNEKQMAREVCIAFRQ-----AVC--GFDLLRC-EGRSYVCDVNGWSFVKNSY 296 (1033)
Q Consensus 241 gk------e~r------~~v~Lt----~~Ek~iA~k~~~afgq-----~VC--GfDLLRs-~g~s~V~DVNGwSFVK~n~ 296 (1033)
+. ..+ .|+.++ ++=.+++.+++++++. .++ .+|..-. ++..||+|||+ .|+-+.+
T Consensus 246 ~~ql~~~~~p~~vv~G~~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInp-R~gGGtn 324 (366)
T PRK13277 246 PQQLKLNEEPRYIEVGHEPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAP-RIGGGTN 324 (366)
T ss_pred hhhhhcccCCceEEEcCccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcC-CcCCCcc
Confidence 11 111 222233 3445677888899883 222 3555554 47899999984 3444433
Q ss_pred hh
Q 001673 297 KY 298 (1033)
Q Consensus 297 kY 298 (1033)
-|
T Consensus 325 l~ 326 (366)
T PRK13277 325 VY 326 (366)
T ss_pred ce
Confidence 33
No 82
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.05 E-value=0.03 Score=64.96 Aligned_cols=198 Identities=20% Similarity=0.210 Sum_probs=113.2
Q ss_pred CcCeeeccccCCCchHHHHHHHHH-----cC-CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccc
Q 001673 56 ICDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (1033)
Q Consensus 56 ~~D~lIsf~s~gfpl~kai~y~~l-----r~-p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~ 129 (1033)
+.|++++-+|-..+|.-+++--+. .+ +.+.++.++..+..||++..+.+.++|+|+| +.+++. .
T Consensus 70 ~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~---------~ 139 (400)
T COG0458 70 RPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHS---------V 139 (400)
T ss_pred CcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-cccccc---------H
Confidence 459999999999999555443332 13 4688999999999999999999999999999 333332 1
Q ss_pred cccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCc-cccc--cccceEEeeccCC
Q 001673 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV-RRVR--REGSYIYEEFMPT 206 (1033)
Q Consensus 130 ~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~-~~~r--~~gsyIyEEFi~~ 206 (1033)
.+..+.+..-| -|+|+||--|. -|.|+. .++.. .++..-. ...+ .-...+.||||..
T Consensus 140 ~e~~~~~~~ig----~PvIVrP~~~l-----------GG~G~~-i~~n~----eel~~~~~~~l~~s~~~~vl~eesi~G 199 (400)
T COG0458 140 EEADEIADEIG----YPVIVKPSFGL-----------GGSGGG-IAYNE----EELEEIIEEGLRASPVEEVLIEESIIG 199 (400)
T ss_pred HHHhhhHhhcC----CCEEEecCcCC-----------CCCcee-EEeCH----HHHHHHHHhccccCccccceeeeeecC
Confidence 13344444333 79999999886 333542 33221 1111000 0111 1235567777765
Q ss_pred CCee--eEEEEECCc--eEEEeeccCCCCCCeeeecCCCCceeee---eeCCHHHHHHHH----HHHHHhCCe-eeeEee
Q 001673 207 GGTD--VKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYP---VLLTPNEKQMAR----EVCIAFRQA-VCGFDL 274 (1033)
Q Consensus 207 ~G~D--VKvytVGp~--~vhAe~RKSPvvDG~vrrN~hgke~r~~---v~Lt~~Ek~iA~----k~~~afgq~-VCGfDL 274 (1033)
..+. +.+..--.+ ++-.|.+-=| .| .|-++..+. -.||..|-++.+ ++.+++|.. =|-|+.
T Consensus 200 ~ke~e~ev~rd~~~n~ivvc~men~dp--~g-----vhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~ 272 (400)
T COG0458 200 WKEFEYEVVRDGKDNCIVVCNMENLDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQF 272 (400)
T ss_pred ceEEEEEEEEeCCCCEEEEEeCCcccc--cc-----ccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeE
Confidence 2211 111111111 2233444443 22 333333322 256776666554 777777765 234554
Q ss_pred eeeC--CCeEEEeec-Cce
Q 001673 275 LRCE--GRSYVCDVN-GWS 290 (1033)
Q Consensus 275 LRs~--g~s~V~DVN-GwS 290 (1033)
-=.. +..||+||| .+|
T Consensus 273 av~~~~~~~~viEvNpRvS 291 (400)
T COG0458 273 AVDPGGGELYVIEINPRVS 291 (400)
T ss_pred EEcCCCceEEEEEecCCcC
Confidence 3333 468999999 776
No 83
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=94.90 E-value=0.013 Score=62.19 Aligned_cols=164 Identities=21% Similarity=0.309 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCE-EEeecccc-CcceEEEeccCC-CChHH
Q 001673 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHGD-DHSIMIYYPSSA-GGGMK 172 (1033)
Q Consensus 96 DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPf-VeKpv~ge-dHni~IYyp~~~-GgG~~ 172 (1033)
+|.-+=++++++||||+.+..... +.+...+|+-.+ .|. |+|+---. -.++.|.-.... -..++
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~---------~~~A~~~l~~~~----~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTD---------YEEALEYLEEQG----YPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESS---------HHHHHHHHHHHS----SSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECC---------HHHHHHHHHhcC----CCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 466677899999999998888875 224455565333 477 99984322 133333321110 11111
Q ss_pred HHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeEEEEECCceEEEe-----eccCCCCCCeeeecCCCCceee
Q 001673 173 ELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRY 246 (1033)
Q Consensus 173 ~Lfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe-----~RKSPvvDG~vrrN~hgke~r~ 246 (1033)
++|.. ..+. .+...|.|||+.-.=--+=|+|=|..|+.-- .|-. ||+-=-|+.|=+.=.
T Consensus 69 ~~~~~------------~~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 69 EIFVD------------RKFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp HHHTS------------STTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred Hhccc------------cccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 22210 0122 4678999999975445566777888776432 2444 788888999887777
Q ss_pred eeeC-CHHH-----HHHHHHHHHHh---CCeeee---EeeeeeCCCeEEEeec
Q 001673 247 PVLL-TPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVN 287 (1033)
Q Consensus 247 ~v~L-t~~E-----k~iA~k~~~af---gq~VCG---fDLLRs~g~s~V~DVN 287 (1033)
|+.. |++. +.|...+.+++ |..-+| +.|.=+.+||+|+|-|
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN 186 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFN 186 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEe
Confidence 7755 5543 23444455555 444455 5667789999999998
No 84
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=92.94 E-value=2.3 Score=46.40 Aligned_cols=175 Identities=20% Similarity=0.248 Sum_probs=100.1
Q ss_pred chhhHHhhHHHHHHHHHhCC--CCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccC
Q 001673 89 EPQHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 166 (1033)
Q Consensus 89 ~~q~~l~DR~~vlqiL~~~g--Ip~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~ 166 (1033)
+.-..+-||..|-..+++.+ ..+|..+-+-.+ -+-|..+ .+..+||+||..|+- .+.|+.-++
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~------------~~~i~~~--~Lp~~fViK~nhgsg-~~~i~~dk~ 77 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLLGVYDN------------PDDIDFD--SLPDKFVIKPNHGSG-SNIIVRDKS 77 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECceeecCCC------------hhhhhhh--cCCCCEEEEEecCCC-cEEEEeCCc
Confidence 33456789999999999886 334444433321 1223222 456799999999984 455555554
Q ss_pred CCC--hHHHHHhh-hCCCcccccCCccccc-cccceEEeeccCC-CC---eeeEEEEECCc--eEEEeeccCCCCCCeee
Q 001673 167 AGG--GMKELFRK-VGNRSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSPVVDGVVM 236 (1033)
Q Consensus 167 ~Gg--G~~~Lfrk-ign~sS~~~p~~~~~r-~~gsyIyEEFi~~-~G---~DVKvytVGp~--~vhAe~RKSPvvDG~vr 236 (1033)
..- -+++.+++ ....-.....+- ..+ -.--.|.||||.. .| .|.|+|+.++. ++....... |.-+
T Consensus 78 ~~d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~----~~~~ 152 (239)
T PF14305_consen 78 KLDIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRF----GNHK 152 (239)
T ss_pred ccCHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCC----CCeE
Confidence 321 11122222 111111122111 222 3456899999999 66 79999999985 566555532 1112
Q ss_pred ec-C--------------CCCceeeeeeCCHHHHHHHHHHHHHhCCeeeeEeeeeeCCCeEEEee
Q 001673 237 RN-P--------------DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDV 286 (1033)
Q Consensus 237 rN-~--------------hgke~r~~v~Lt~~Ek~iA~k~~~afgq~VCGfDLLRs~g~s~V~DV 286 (1033)
++ - .+..+..|-.| ++-.++|.++|+-|. -|=||+..++|+.|+-|.
T Consensus 153 ~~~yd~dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGEl 214 (239)
T PF14305_consen 153 RNFYDRDWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGEL 214 (239)
T ss_pred EEEECcccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEee
Confidence 21 1 11122222222 344566777777655 578999999999999887
No 85
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=91.81 E-value=0.67 Score=52.89 Aligned_cols=220 Identities=20% Similarity=0.231 Sum_probs=135.0
Q ss_pred EeecCcccCChhHH-------------HHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHH
Q 001673 11 VCVMEKKVFSAPMG-------------QILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYA 77 (1033)
Q Consensus 11 VCAMd~Ka~SkPm~-------------~IL~RL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~ 77 (1033)
|.|.|+=+....|| +-|..+++....|.||=.=+-| ..| ++--+
T Consensus 38 ViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI---------~td--------------~L~el 94 (394)
T COG0027 38 VIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI---------ATD--------------ALVEL 94 (394)
T ss_pred EEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh---------hHH--------------HHHHH
Confidence 67777777777775 4455566555555555322222 223 33444
Q ss_pred HHcCCcccCCcchhhHHhhHHHHHHHH-HhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccC
Q 001673 78 TLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (1033)
Q Consensus 78 ~lr~p~~lNdl~~q~~l~DR~~vlqiL-~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~ged 156 (1033)
+..+-.+|-.-.+-++-.+|-..-++. ++.|+||-+|-|++.. .+.....+ .++.|-|+||+-+.
T Consensus 95 E~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~---------~e~~~a~~----~iGfPcvvKPvMSS- 160 (394)
T COG0027 95 EEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSL---------EELRAAVE----KIGFPCVVKPVMSS- 160 (394)
T ss_pred HhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccH---------HHHHHHHH----HcCCCeeccccccc-
Confidence 455555555556666666664433333 3469999999999862 12333333 23489999999987
Q ss_pred cceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCC--eeeEEEEECCc--eEEEeeccCCCC
Q 001673 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGG--TDVKVYTVGPE--YAHAEARKSPVV 231 (1033)
Q Consensus 157 Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~~~G--~DVKvytVGp~--~vhAe~RKSPvv 231 (1033)
.|.|. .+.|+..+-.+-++--..--| ..+..|+|+|++=+- |=+-|=.+++. ||+ |
T Consensus 161 ----------SGkGq-svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~------P-- 221 (394)
T COG0027 161 ----------SGKGQ-SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCA------P-- 221 (394)
T ss_pred ----------CCCCc-eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCC------C--
Confidence 88886 577777666666653222234 678899999998732 44444334444 554 3
Q ss_pred CCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhC-CeeeeEeeeeeCCCeEEEee
Q 001673 232 DGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDV 286 (1033)
Q Consensus 232 DG~vrrN~hgke~r~~v~Lt~~----Ek~iA~k~~~afg-q~VCGfDLLRs~g~s~V~DV 286 (1033)
-|..+-+-+=-|.-.|-.+|+. -+.||.+|+.|+| ..|-||.|.=+.+.-|.-||
T Consensus 222 IGHrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEV 281 (394)
T COG0027 222 IGHRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEV 281 (394)
T ss_pred cccccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeec
Confidence 3444444444577788999974 4568888888885 67889988655555554444
No 86
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=91.21 E-value=0.14 Score=59.23 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=40.7
Q ss_pred HHHHHHhh--cCCCCcchhhh--hhcccccceEeecCCchHHHHHHHHHhhhcccCCCCCcceeeeEecCCCC
Q 001673 495 NEIAYWWG--SHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSM 563 (1033)
Q Consensus 495 e~LG~~fR--Yp~~~~gLLrL--hst~rhDlKIysSdEgRVq~TAaaFakglL~legeLtPilv~~V~Kd~~l 563 (1033)
=.+|..|| |- .-+|.+ |.---.|+-++|+--+|.-.||-||-=+||--. ...|| .||-..++
T Consensus 178 L~~G~~~r~~Y~---k~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~i---~iR~s~s~ 243 (487)
T KOG3672|consen 178 LRLGKYFRHRYE---KTKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAPI---QIRASNSS 243 (487)
T ss_pred HhhhHHHHHHHh---hccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhhee---eeecCccc
Confidence 35799999 63 112222 223336777999999999999999988887654 35565 35544333
No 87
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.35 E-value=0.19 Score=57.54 Aligned_cols=203 Identities=19% Similarity=0.225 Sum_probs=131.6
Q ss_pred HHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhC-------CCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCC
Q 001673 74 ESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP 146 (1033)
Q Consensus 74 i~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~-------gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kP 146 (1033)
+.=+..-+...||++..-+.+-||--+..-|.+. .+|+=.-.+.- .....+..- ..|
T Consensus 178 vig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yP------------nHK~m~s~~----tyP 241 (488)
T KOG3895|consen 178 VIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYP------------NHKEMLSQP----TYP 241 (488)
T ss_pred HHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecC------------CchhhccCC----CCc
Confidence 3334555778899999999999995555445442 23432222211 123333333 269
Q ss_pred EEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccc-cccceEEeeccCCCCeeeEEEEECCceEEEee
Q 001673 147 FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEA 225 (1033)
Q Consensus 147 fVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~ 225 (1033)
+|+|.=.|- +|.|-. |+.|..-.-|-+. .+. ++.---.|-||..+ -|||+=-+|.+|-+=|+
T Consensus 242 vVVkvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~epFiDaK-YDiriQKIG~nYKaymR 304 (488)
T KOG3895|consen 242 VVVKVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEPFIDAK-YDIRIQKIGHNYKAYMR 304 (488)
T ss_pred EEEEecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhcccccccc-ceeehhhhhhhHHHHhh
Confidence 999987776 787743 3433332222110 111 22223456677653 59999999999977665
Q ss_pred ccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhC-CeeeeEeeeee-CCCeEEEeecCceecccchhhHHH--
Q 001673 226 RKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRC-EGRSYVCDVNGWSFVKNSYKYYDD-- 301 (1033)
Q Consensus 226 RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afg-q~VCGfDLLRs-~g~s~V~DVNGwSFVK~n~kYYDd-- 301 (1033)
.| +-|....|+ |-.+-+.|..++..|...--++..|| +.||.||.|-+ .|+-||+|||+-| +-|+-+
T Consensus 305 -ts--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~s-----mpliGeh~ 375 (488)
T KOG3895|consen 305 -TS--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSS-----MPLIGEHQ 375 (488)
T ss_pred -hh--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccc-----ccccccch
Confidence 45 589998887 66777788899999999888888885 89999999999 5889999999855 445422
Q ss_pred --HHHHHHHHHHHhhCCCC
Q 001673 302 --AACVLRKMFLEAKAPHL 318 (1033)
Q Consensus 302 --cA~iL~~~~l~~~~~~~ 318 (1033)
=.+.+.++.....++.+
T Consensus 376 eeDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 376 EEDRQLISELVVSKMAQLL 394 (488)
T ss_pred hHHHHHHHHHHHHHhhhcc
Confidence 23445555555555554
No 88
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=89.05 E-value=0.15 Score=53.07 Aligned_cols=148 Identities=22% Similarity=0.336 Sum_probs=69.7
Q ss_pred HHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccc-c-CcceEEEeccCCCChHHHHHhhhCCC
Q 001673 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNR 181 (1033)
Q Consensus 104 L~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~g-e-dHni~IYyp~~~GgG~~~Lfrkign~ 181 (1033)
|++.|||+|.+..+.... +....+. .++.|+|.|+..| - -++.++-...+ -....++.+
T Consensus 1 l~~~gip~~~~~~i~~~~---------~l~~a~~----~iG~P~vlK~~~~GYDGkGq~~i~~~~---dl~~a~~~~--- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE---------DLEEAAE----SIGFPAVLKTRRGGYDGKGQFVIRSEE---DLEKAWQEL--- 61 (172)
T ss_dssp HHHTT--B-EEEEESSHH---------HHHHHHH----HHTSSEEEEESSSSCTTTTEEEESSGG---GHHHHHHHT---
T ss_pred CcccCCCCCCeEEECCHH---------HHHHHHH----HcCCCEEEEccCcCcCCCccEEECCHH---HHHHHHHhc---
Confidence 789999999999998621 1222222 2346999997665 3 12222222211 122222222
Q ss_pred cccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCH----HHHHH
Q 001673 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQM 257 (1033)
Q Consensus 182 sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~----~Ek~i 257 (1033)
..+.+|.|+|++-. ..|=|.++-. ..-+.+-=|++ .-+.+|-.-..+-.|..+++ +=++|
T Consensus 62 ------------~~~~~ilE~~v~f~-~EiSvivaR~--~~G~~~~yp~~-en~~~~~il~~s~~Pa~i~~~~~~~a~~i 125 (172)
T PF02222_consen 62 ------------GGGPCILEEFVPFD-REISVIVARD--QDGEIRFYPPV-ENVHRDGILHESIAPARISDEVEEEAKEI 125 (172)
T ss_dssp ------------TTSCEEEEE---ES-EEEEEEEEEE--TTSEEEEEEEE-EEEEETTEEEEEEESCSS-HHHHHHHHHH
T ss_pred ------------CCCcEEEEeccCCc-EEEEEEEEEc--CCCCEEEEcCc-eEEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 47889999998732 2233332210 00111111111 01111212223345666665 44567
Q ss_pred HHHHHHHhCC-eeeeEeeeeeCCC--eEEEee
Q 001673 258 AREVCIAFRQ-AVCGFDLLRCEGR--SYVCDV 286 (1033)
Q Consensus 258 A~k~~~afgq-~VCGfDLLRs~g~--s~V~DV 286 (1033)
|.+|+.+++- -|-++.+.=+.+| -||=|+
T Consensus 126 a~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEi 157 (172)
T PF02222_consen 126 ARKIAEALDYVGVLAVEFFVTKDGDEVLVNEI 157 (172)
T ss_dssp HHHHHHHHTSSEEEEEEEEEETTSTEEEEEEE
T ss_pred HHHHHHHcCcEEEEEEEEEEecCCCEEEEEec
Confidence 8888888864 4667777777444 466554
No 89
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=88.18 E-value=1.9 Score=50.17 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEee
Q 001673 72 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (1033)
Q Consensus 72 kai~y~~lr~p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKp 151 (1033)
.++.++... ..+.=..+...+++||+.==+.|++.|||+|.+..+.... +....+. .|+.|+|.|.
T Consensus 76 ~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~---------el~~~~~----~~g~p~VlKt 141 (375)
T COG0026 76 EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAE---------ELDAAAA----DLGFPAVLKT 141 (375)
T ss_pred HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHH---------HHHHHHH----HcCCceEEEe
Confidence 466777766 3344456888999999999999999999999999998631 2222222 2337999999
Q ss_pred ccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCC
Q 001673 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 231 (1033)
Q Consensus 152 v~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvv 231 (1033)
--|- | .|.|.. ..+......+... ..-..+..|.|+|++=+.+ |-|.++ | + .
T Consensus 142 r~gG-------Y---DGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~~E-iSvi~a---------R-~--~ 193 (375)
T COG0026 142 RRGG-------Y---DGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFERE-ISVIVA---------R-S--N 193 (375)
T ss_pred cccc-------c---cCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccceE-EEEEEE---------E-c--C
Confidence 9874 1 466753 4443322222111 1112333499999987543 333332 1 1 1
Q ss_pred CCeee-----ecCCCCcee-eee---eCCH----HHHHHHHHHHHHhCC-eeeeEeeeeeCCCe
Q 001673 232 DGVVM-----RNPDGKEVR-YPV---LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRS 281 (1033)
Q Consensus 232 DG~vr-----rN~hgke~r-~~v---~Lt~----~Ek~iA~k~~~afgq-~VCGfDLLRs~g~s 281 (1033)
||.|. -|.|..++= +.| .+++ +=++||.+++..++. -|-||.+-=..+|.
T Consensus 194 ~G~~~~yP~~eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~ 257 (375)
T COG0026 194 DGEVAFYPVAENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGE 257 (375)
T ss_pred CCCEEEecccceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCc
Confidence 44443 467765553 222 2444 456788888888764 46677776666643
No 90
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=81.58 E-value=11 Score=37.89 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=51.5
Q ss_pred ccccceEEeeccCCCCeeeEEEEECCceEEEeeccCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHH--HhCCeee
Q 001673 193 RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAVC 270 (1033)
Q Consensus 193 r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~--afgq~VC 270 (1033)
..+...+..|-+. -..--|+|++.++++.+-.= .|. -+..+ .++-..-|.++.+ .-.-..|
T Consensus 33 ~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y-----~~~---------~~~~~--~~~~~~~~~~~~~~~~~~p~~~ 95 (130)
T PF14243_consen 33 DPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPY-----RGD---------WDLEP--DPDVVAFAIQALAAAWTLPPAY 95 (130)
T ss_pred CCCceEEEeceEe-eeeeEEEEEECCEEEEEeec-----CCC---------cccCC--CHHHHHHHHHHHHhcccCCCeE
Confidence 3456667666666 46677999999887665322 111 11111 3333334444444 3457889
Q ss_pred eEeeeee-CCCeEEEeec-Cce
Q 001673 271 GFDLLRC-EGRSYVCDVN-GWS 290 (1033)
Q Consensus 271 GfDLLRs-~g~s~V~DVN-GwS 290 (1033)
.+|+=++ +|+.+|+|+| ||+
T Consensus 96 vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 96 VLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEEeCCCCEEEEEecCccc
Confidence 9999999 7899999999 776
No 91
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=73.98 E-value=2.4 Score=50.40 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=39.8
Q ss_pred cch--HHHHHHhh--cCCCCcchhhhhhcc-cccceEeecCCchHHHHHHHHHhhhcccCC
Q 001673 492 NGV--NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (1033)
Q Consensus 492 GGE--e~LG~~fR--Yp~~~~gLLrLhst~-rhDlKIysSdEgRVq~TAaaFakglL~leg 547 (1033)
|++ -.||+.+| |-. .|||-=+..| ..++.|+|++-.|.++||++|..||.--.|
T Consensus 77 G~~~~~~lG~~lR~rY~~--~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 77 GGELVTLLGHYQRQRLVA--DGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 555 57999999 632 3564222112 456899988888999999999999988765
No 92
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=71.80 E-value=1.3 Score=48.61 Aligned_cols=54 Identities=24% Similarity=0.600 Sum_probs=27.9
Q ss_pred CEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC----CC--eeeEEEEEC
Q 001673 146 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVG 217 (1033)
Q Consensus 146 PfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~----~G--~DVKvytVG 217 (1033)
-+|.||-.|. +|.|.. |++.. +.+.. . .....+.||.|+||+. +| -|||+||+=
T Consensus 67 ~wI~KP~~~~-----------rG~GI~-l~~~~----~~i~~-~-~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlv 126 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGIK-LFNNL----EQILR-F-SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLV 126 (292)
T ss_dssp -EEEEES------------------EE-EES-H----HHHHC-C-HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE
T ss_pred EEEEeccccC-----------CCCCce-ecCCH----HHHHH-H-hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEE
Confidence 5889998887 777773 66543 11110 0 1246899999999975 77 899999873
No 93
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=69.45 E-value=12 Score=44.53 Aligned_cols=213 Identities=16% Similarity=0.205 Sum_probs=121.3
Q ss_pred HHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHHHcCCcccCCcchhh-HHhhHHHHHHHHH
Q 001673 27 LDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQH-LLHDRRKVYEQLE 105 (1033)
Q Consensus 27 L~RL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p~~lNdl~~q~-~l~DR~~vlqiL~ 105 (1033)
|-++.....+|++|-|-+.-|-.. +...++.++..+.--...=. +=++|--+=++++
T Consensus 55 lv~fA~~~~idl~vVGPE~pL~~G----------------------vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~ 112 (428)
T COG0151 55 LVAFAKEKNVDLVVVGPEAPLVAG----------------------VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMK 112 (428)
T ss_pred HHHHHHHcCCCEEEECCcHHHhhh----------------------hHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHH
Confidence 344444455666666655544442 44445555544443332222 3345666778899
Q ss_pred hCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccc
Q 001673 106 KYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF 185 (1033)
Q Consensus 106 ~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~ 185 (1033)
++|||++.+-..+. ..+...+|.--| .|+|+||.-=. .|.||. ..-.+..+..-.
T Consensus 113 k~~IPta~y~~f~~---------~e~a~ayi~~~g----~piVVKadGLa-----------aGKGV~-V~~~~eeA~~a~ 167 (428)
T COG0151 113 KYGIPTAEYEVFTD---------PEEAKAYIDEKG----APIVVKADGLA-----------AGKGVI-VAMTLEEAEAAV 167 (428)
T ss_pred HcCCCcccccccCC---------HHHHHHHHHHcC----CCEEEeccccc-----------CCCCeE-EcCCHHHHHHHH
Confidence 99999999887773 224566775333 69999994323 577774 333322222111
Q ss_pred cCCc--cccc-cccceEEeeccCCCCeeeEEEEECCceEE---EeeccCCCCCCeeeecCCCCceeeeee-CCHHHH---
Q 001673 186 HPDV--RRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK--- 255 (1033)
Q Consensus 186 ~p~~--~~~r-~~gsyIyEEFi~~~G~DVKvytVGp~~vh---Ae~RKSPvvDG~vrrN~hgke~r~~v~-Lt~~Ek--- 255 (1033)
+.=+ +.+. .....+.|||+.-.=--+-|+|=|.+++- |---|= +.||+-=-|+-|=+.=.|+. +|++.-
T Consensus 168 ~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKr-a~dgD~GPNTGGMGaysp~P~~t~e~~~~~ 246 (428)
T COG0151 168 DEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKR-AYDGDTGPNTGGMGAYSPAPFITDEVVERA 246 (428)
T ss_pred HHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECcccccccc-ccCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 1000 0121 12568999999865566677777776542 111111 24788778998877666553 455533
Q ss_pred --HHHHHHHHHhCC---eeeeE---eeeeeCCCeEEEeec
Q 001673 256 --QMAREVCIAFRQ---AVCGF---DLLRCEGRSYVCDVN 287 (1033)
Q Consensus 256 --~iA~k~~~afgq---~VCGf---DLLRs~g~s~V~DVN 287 (1033)
+|-..+.++|.. .-+|| =|.=+..||+|+|-|
T Consensus 247 ~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN 286 (428)
T COG0151 247 VEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFN 286 (428)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEe
Confidence 334455555544 46666 223456779999999
No 94
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=68.79 E-value=4.5 Score=38.97 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccceEeecCCchHHHHHHHHHhhhc
Q 001673 519 HDLKIYSSDEGRVQMSAAAFAKGLL 543 (1033)
Q Consensus 519 hDlKIysSdEgRVq~TAaaFakglL 543 (1033)
.-..||||+-.||+.||++|+.++.
T Consensus 47 ~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 47 KFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred CCCEEEECChHHHHHHHHHHHHHhc
Confidence 3457999999999999999999985
No 95
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=67.33 E-value=5.9 Score=46.64 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=38.7
Q ss_pred HHHHHHhh--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHhhhcccCCC
Q 001673 495 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (1033)
Q Consensus 495 e~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakglL~lege 548 (1033)
-+||+.+| |=..+ ++| -..=-+.++.|+|||=-|+.|||++..+||+.-++.
T Consensus 80 ~~LG~~LR~rYvr~~-~fL-~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 80 FELGRFLRKRYVRYG-NFL-SPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred HHHHHHHHHHHhhcc-ccC-CcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 47999998 42111 132 112227899999999999999999999999998754
No 96
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=65.03 E-value=4.2 Score=47.86 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=25.5
Q ss_pred cccccceEEEEecCCCCCCCCCeeEEEEEecCCCCCCCC
Q 001673 908 DYMSYIVLRMFENTAVALEDPKRFRIELTFSRGADLSPL 946 (1033)
Q Consensus 908 dYLSqIvf~LYE~~~~~~~~~~rf~Iei~~SpG~~~~pl 946 (1033)
.|-+.|.||+|++.+ ..+.|+|.+.-..+..|.
T Consensus 317 ~yas~i~iEl~~~~~------~~~~vk~~yr~~~~~~~~ 349 (411)
T KOG3720|consen 317 PYASAIAIELHRNKG------GKPYVKLLYRNDEHSEPV 349 (411)
T ss_pred chHHHhHhhheecCC------CCEEEEEEEecCCCCCce
Confidence 588999999999985 667888888666654343
No 97
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=64.84 E-value=4.9 Score=47.90 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=37.4
Q ss_pred eeEEEeecchhHHHHHHHHHhc-CCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCee-EEEEE
Q 001673 859 RTRLYFTSESHIHSLMNVLRYC-NLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRF-RIELT 936 (1033)
Q Consensus 859 RTrlYFTsESHIhSLLNvlr~g-~l~~~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf~LYE~~~~~~~~~~rf-~Iei~ 936 (1033)
|-.+|.--.|.|-+|++.|..- .|+.. ...+| +=+-+|||+|++.+ +.++| +|++.
T Consensus 322 kl~~lvGHDTNIA~l~~~L~~~w~lp~q---------------~~~tP---pGg~LvFErw~d~~----~~~~~vrv~~~ 379 (436)
T PRK10172 322 SVLFIAGHDTNLANLGGALELNWTLPGQ---------------PDNTP---PGGELVFERWRRLS----DNSQWIQVSLV 379 (436)
T ss_pred eEEEEEecchhHHHHHHHhCCCccCCCC---------------CCCCC---CcceEEEEEEeeCC----CCceEEEEEEE
Confidence 6789999999999999999541 12211 11222 34789999999863 34554 66653
No 98
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=60.80 E-value=17 Score=43.07 Aligned_cols=65 Identities=26% Similarity=0.414 Sum_probs=46.5
Q ss_pred CEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---CCe--eeEEEEECCc
Q 001673 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GGT--DVKVYTVGPE 219 (1033)
Q Consensus 146 PfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~---~G~--DVKvytVGp~ 219 (1033)
.+|.||+-| |--||-|+-+ |+. +.++-|+ |. +..+|||+|.+- +|. =|=+++||+.
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g~----y~--------~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~ 370 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDGN----YA--------EEPRVVQQLIEWGRFDGCYPMIGVWMVGSE 370 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCCC----CC--------CCCeEEEEccCCcccCCcEEEEEEEEECCE
Confidence 499999999 7777777743 222 2221111 32 577899999975 553 4788999999
Q ss_pred eEEEeeccC
Q 001673 220 YAHAEARKS 228 (1033)
Q Consensus 220 ~vhAe~RKS 228 (1033)
+|.---|.+
T Consensus 371 ~aGlgiRe~ 379 (397)
T PHA02117 371 AAGLCIRED 379 (397)
T ss_pred eeEEEEecC
Confidence 999999987
No 99
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=55.26 E-value=18 Score=41.51 Aligned_cols=153 Identities=25% Similarity=0.341 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCChHHHHHh
Q 001673 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176 (1033)
Q Consensus 97 R~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfr 176 (1033)
+=.-|.+-.+.|+|.|+|..++.. .| ..+-.+.-|.|.||=.| ||+-...|
T Consensus 115 KPllY~ra~elgl~~P~Ty~v~S~------------~d---~~~~el~FPvILKP~mg--------------g~~~~~ar 165 (415)
T COG3919 115 KPLLYNRAEELGLPYPKTYLVNSE------------ID---TLVDELTFPVILKPGMG--------------GSVHFEAR 165 (415)
T ss_pred CcHHHHHHHHhCCCCcceEEecch------------hh---hhhhheeeeEEecCCCC--------------Ccceeehh
Confidence 334578888999999999999852 11 12223456899999544 33322333
Q ss_pred hhCCCcc---cccCCcc-ccc--cccceEEeeccCCCCeeeEEEE----ECCce---EEEeeccCCCCCCeeeecCCCCc
Q 001673 177 KVGNRSS---EFHPDVR-RVR--REGSYIYEEFMPTGGTDVKVYT----VGPEY---AHAEARKSPVVDGVVMRNPDGKE 243 (1033)
Q Consensus 177 kign~sS---~~~p~~~-~~r--~~gsyIyEEFi~~~G~DVKvyt----VGp~~---vhAe~RKSPvvDG~vrrN~hgke 243 (1033)
+.--.-+ ++..-++ +.. ---+.|+||||+-+|+.-++|. -|-.+ .+--+|+=||--| -
T Consensus 166 aKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPvdfg---------y 236 (415)
T COG3919 166 AKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPVDFG---------Y 236 (415)
T ss_pred hheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCcccc---------c
Confidence 2211100 0100000 011 1236799999999999888764 23333 3334566664333 2
Q ss_pred eeeeeeCCHH--HHHHHHHHHHHhCC-eeeeEeeeee-CCCeE-EEeec
Q 001673 244 VRYPVLLTPN--EKQMAREVCIAFRQ-AVCGFDLLRC-EGRSY-VCDVN 287 (1033)
Q Consensus 244 ~r~~v~Lt~~--Ek~iA~k~~~afgq-~VCGfDLLRs-~g~s~-V~DVN 287 (1033)
..+.|++-.+ --+-|+++-...+- ...-||+=+. .+||| ++|||
T Consensus 237 tst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 237 TSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred ccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 3345555552 22335555544443 3567888887 45665 89999
No 100
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=52.96 E-value=10 Score=44.78 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=40.4
Q ss_pred cch--HHHHHHhh-cCCCCcchhhhhhc-ccccceEeecCCchHHHHHHHHHhhhcccCC
Q 001673 492 NGV--NEIAYWWG-SHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (1033)
Q Consensus 492 GGE--e~LG~~fR-Yp~~~~gLLrLhst-~rhDlKIysSdEgRVq~TAaaFakglL~leg 547 (1033)
|++ ..+|+.+| |- ...|||--+-- --.++.+||++--|.+.||++|+.||.--.+
T Consensus 75 G~~~~~~~G~~~r~~~-~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 75 GGVLEVYMGHYMREWL-AQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 666 67999999 32 24567522110 1247999999999999999999999987654
No 101
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=52.45 E-value=16 Score=32.56 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.7
Q ss_pred eeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCe
Q 001673 235 VMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA 268 (1033)
Q Consensus 235 vrrN~hgke~r~~v~Lt~~Ek~iA~k~~~afgq~ 268 (1033)
|+.+...-|..+|..||++|+.+.-.+|.-||+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5656668999999999999999999999999986
No 102
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=47.02 E-value=15 Score=35.36 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||.-.||+-||+++++++
T Consensus 50 ~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 50 VIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCcchhhhhhchhhccc
Confidence 399999999999999999954
No 103
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=44.55 E-value=44 Score=41.84 Aligned_cols=73 Identities=25% Similarity=0.389 Sum_probs=50.4
Q ss_pred CEEEeeccc-cCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccccceEEeeccCC---CC--eeeEEEEECCc
Q 001673 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 219 (1033)
Q Consensus 146 PfVeKpv~g-edHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~---~G--~DVKvytVGp~ 219 (1033)
.+|.||+-| |--||-|+-+. |. .+.+.-|. |. +..+|||+|.+- +| .=|=+++||+.
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~-~~~~~~g~----y~--------~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~ 591 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EE-VLDKTSGK----FA--------EQKNIYQQLWCLPKVDGKYIQVCTFTVGGN 591 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----Cc-EeeccCCC----CC--------CCCeEEEEeccCcccCCCEEEEEEEEECCE
Confidence 599999999 87788888431 22 12222222 33 567899999975 33 55778999999
Q ss_pred eEEEeeccCCCCCCeeeec
Q 001673 220 YAHAEARKSPVVDGVVMRN 238 (1033)
Q Consensus 220 ~vhAe~RKSPvvDG~vrrN 238 (1033)
+|..--|.+ +|.+-.|
T Consensus 592 ~aG~giRed---~~~IT~~ 607 (619)
T PRK10507 592 YGGTCLRGD---PSLVIKK 607 (619)
T ss_pred EEEEEEecC---CccccCC
Confidence 999999988 3544333
No 104
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=40.30 E-value=20 Score=36.19 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||.-.|++.||+++++.+
T Consensus 46 ~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 46 AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred EEEECchHHHHHHHHHHHhhc
Confidence 499999999999999998753
No 105
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=39.59 E-value=21 Score=34.84 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||.-.|++.||+++++++
T Consensus 50 ~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 50 RIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred EEEECcHHHHHHHHHHHHHhc
Confidence 699999999999999999987
No 106
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=36.11 E-value=16 Score=42.30 Aligned_cols=42 Identities=31% Similarity=0.460 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeec
Q 001673 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPV 152 (1033)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv 152 (1033)
..+.++|++.|||+|++.++... . +....+. +++ .|+|+||.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~~~--~-------ea~~~~~~ig~----~PvVvK~~ 48 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVATSV--E-------EAEEIAAKLGA----GPVVVKAQ 48 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH--H-------HHHHHHHHhCC----CcEEEEec
Confidence 35789999999999999988541 1 1111221 331 59999997
No 107
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=35.06 E-value=12 Score=40.37 Aligned_cols=42 Identities=38% Similarity=0.579 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEE-EcceecCCCEEEeecc
Q 001673 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVH 153 (1033)
Q Consensus 99 ~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~-v~G~~~~kPfVeKpv~ 153 (1033)
.+-++|.++|||+|+..++... . +..+... +++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~--e-------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSP--E-------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSH--H-------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCH--H-------HHHHHHHHhCC----CcEEEEEeE
Confidence 4678999999999999999862 1 2333332 564 689999954
No 108
>PRK03482 phosphoglycerate mutase; Provisional
Probab=32.93 E-value=32 Score=36.23 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=18.5
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKG 541 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (1033)
.||||.-.|++-||+++++.
T Consensus 50 ~I~sSpl~Ra~qTA~~i~~~ 69 (215)
T PRK03482 50 HIISSDLGRTRRTAEIIAQA 69 (215)
T ss_pred EEEECCcHHHHHHHHHHHHh
Confidence 69999999999999999865
No 109
>PRK13463 phosphatase PhoE; Provisional
Probab=32.13 E-value=32 Score=36.13 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.1
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKG 541 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (1033)
.||||+-.|++-||++++..
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 51 AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred EEEECCcHHHHHHHHHHHhc
Confidence 59999999999999999763
No 110
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=31.58 E-value=37 Score=40.29 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=33.3
Q ss_pred eeEEEeecchhHHHHHHHHHhcCCcc-cccccchhhhhhhhhhhcCCCCCcccccceEEEEecC
Q 001673 859 RTRLYFTSESHIHSLMNVLRYCNLDE-SLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENT 921 (1033)
Q Consensus 859 RTrlYFTsESHIhSLLNvlr~g~l~~-~~~~~~~~i~~~A~~~l~~i~ELdYLSqIvf~LYE~~ 921 (1033)
|-.+||.--|.|.+|++.|- +.. .+- ..-..--|=+.|+||+|.+.
T Consensus 304 Kl~lysgHDtnIa~ll~ALg---l~~~~lP--------------~~~~~~P~g~~LvFEl~~d~ 350 (413)
T PRK10173 304 KVTVLVGHDSNIASLLTALD---FKPYQLH--------------DQYERTPIGGKIVFQRWHDS 350 (413)
T ss_pred CEEEEEEccccHHHHHHHhC---CCccccC--------------CCCCcCCccceEEEEEEEeC
Confidence 57999999999999999983 321 110 01134568899999999976
No 111
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.30 E-value=31 Score=34.74 Aligned_cols=72 Identities=11% Similarity=0.230 Sum_probs=51.4
Q ss_pred eeEEEEeecCcccCChhHHHHHHHhhccCCeEEEEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHHH
Q 001673 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATL 79 (1033)
Q Consensus 6 ~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~feviiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~l 79 (1033)
--.||+|+|+--.... |+.++.+|.+.+--++.|+-.=.+.+++.+.|=...+ =.||+.|-|+...++++..
T Consensus 54 adii~iSsl~~~~~~~-~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 54 VHVVGVSSLAGGHLTL-VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCEEEEcCchhhhHHH-HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHHHHHHHHH
Confidence 3479999999665555 9999999988764466555554555666666654443 4678999999888888765
No 112
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=30.07 E-value=36 Score=35.36 Aligned_cols=23 Identities=39% Similarity=0.325 Sum_probs=20.2
Q ss_pred ceEeecCCchHHHHHHHHHhhhc
Q 001673 521 LKIYSSDEGRVQMSAAAFAKGLL 543 (1033)
Q Consensus 521 lKIysSdEgRVq~TAaaFakglL 543 (1033)
-.||||+-.|++-||++.|+.+-
T Consensus 52 ~~i~sS~l~Ra~~TA~~~a~~~~ 74 (208)
T COG0406 52 DAIYSSPLKRAQQTAEPLAEELG 74 (208)
T ss_pred CEEEECchHHHHHHHHHHHHhcC
Confidence 34899999999999999998764
No 113
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=29.38 E-value=40 Score=33.29 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||.-.|++-||+++++.+
T Consensus 51 ~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 51 VIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred EEEeCchHHHHHHHHHHHHhc
Confidence 499999999999999998765
No 114
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=27.56 E-value=43 Score=36.32 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||+-.|++-||+++++++
T Consensus 39 ~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 39 VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 699999999999999999765
No 115
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=27.24 E-value=42 Score=35.00 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.6
Q ss_pred eEeecCCchHHHHHHHHHhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKG 541 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakg 541 (1033)
+||||.-.|++-||++++++
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 49 LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred EEEECchHHHHHHHHHHHhc
Confidence 49999999999999999875
No 116
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=26.56 E-value=45 Score=34.84 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||+-.|++-||+++++.+
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 49 AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred EEEeCcHHHHHHHHHHHHHhc
Confidence 599999999999999999865
No 117
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=26.54 E-value=1.3e+02 Score=38.90 Aligned_cols=180 Identities=23% Similarity=0.322 Sum_probs=116.2
Q ss_pred CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEE
Q 001673 82 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 161 (1033)
Q Consensus 82 p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~I 161 (1033)
.|+==.++....+=|+-++-.+-.++|||+=. ..++|... ..+.....+ ..+.|+++|..-|-
T Consensus 107 ~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvip----gt~~~~~~---~ee~~~fa~----~~gyPvmiKA~~GG------ 169 (1149)
T COG1038 107 TFIGPKPEVLDMLGDKVKARNAAIKAGVPVIP----GTDGPIET---IEEALEFAE----EYGYPVMIKAAAGG------ 169 (1149)
T ss_pred EEeCCCHHHHHHhccHHHHHHHHHHcCCCccC----CCCCCccc---HHHHHHHHH----hcCCcEEEEEccCC------
Confidence 45556678888899999988888899999522 22332211 112222222 23489999998875
Q ss_pred EeccCCCChHHHHHh-------hhCCCcccccCCccccccccceEEeeccCCCCeeeEEEEEC---CceEEEeeccCCCC
Q 001673 162 YYPSSAGGGMKELFR-------KVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVV 231 (1033)
Q Consensus 162 Yyp~~~GgG~~~Lfr-------kign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKvytVG---p~~vhAe~RKSPvv 231 (1033)
-|.|+ |..| ..-.++|+=.. ++..+.-| .|.|+. +-.-|-|=+.| ++++|--.|-+-
T Consensus 170 -----GGRGM-R~vr~~~~l~~~~~~AksEAka---AFG~~eVy-vEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCS-- 236 (1149)
T COG1038 170 -----GGRGM-RVVRSEADLAEAFERAKSEAKA---AFGNDEVY-VEKLVE-NPKHIEVQILGDTHGNVVHLFERDCS-- 236 (1149)
T ss_pred -----Cccce-eeecCHHHHHHHHHHHHHHHHH---hcCCCcEE-hhhhhc-CcceeEEEEeecCCCCEEEEeecccc--
Confidence 34444 3333 33334444443 34444433 366665 44556666666 468999999885
Q ss_pred CCeeeecCCCCceeeeeeCCHHHHH----HHHHHHHHhCCeeee-Eeeeee-CCCeEEEeecCceecc
Q 001673 232 DGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFVK 293 (1033)
Q Consensus 232 DG~vrrN~hgke~r~~v~Lt~~Ek~----iA~k~~~afgq~VCG-fDLLRs-~g~s~V~DVNGwSFVK 293 (1033)
.=|||--==|++-.+-|+++-++ -|.|+|+..|-.=+| |..|=. .|+-|.||||=-=-|-
T Consensus 237 --vQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVE 302 (1149)
T COG1038 237 --VQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVE 302 (1149)
T ss_pred --hhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeE
Confidence 33676666688888999997764 579999999987777 566655 5699999999654443
No 118
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=26.02 E-value=51 Score=33.43 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||.=.|++-||+++++.+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 47 RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 699999999999999999886
No 119
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=25.80 E-value=24 Score=40.95 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeE-EEcceecCCCEEEeec
Q 001673 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV-EVHGNRFWKPFVEKPV 152 (1033)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I-~v~G~~~~kPfVeKpv 152 (1033)
..+.++|+++|||+|.+.++... . +..... .++ +.|+|+||.
T Consensus 6 ~~ak~lL~~~gIpvp~~~~~~~~--~-------ea~~~a~~i~----g~PvVvK~~ 48 (388)
T PRK00696 6 YQAKELFAKYGVPVPRGIVATTP--E-------EAVEAAEELG----GGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHcCCCCCCCeeeCCH--H-------HHHHHHHHcC----CCcEEEEEe
Confidence 45678999999999999988752 1 111122 132 369999996
No 120
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.41 E-value=40 Score=32.88 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=48.7
Q ss_pred eeEEEEeecCcccCChhHHHHHHHhhccCCeEE-EEeCcceeecCCCcccCCcCeeeccccCCCchHHHHHHHH
Q 001673 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEV-IHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT 78 (1033)
Q Consensus 6 ~~~iGVCAMd~Ka~SkPm~~IL~RL~~~~~fev-iiF~d~vIL~e~ve~wP~~D~lIsf~s~gfpl~kai~y~~ 78 (1033)
.-.|++|.++...... +++++++|.+.+.-++ +++|.. +.++.++.|=... +=.||+.|.+.+.++.|.+
T Consensus 51 ~d~V~iS~~~~~~~~~-~~~~~~~L~~~~~~~i~i~~GG~-~~~~~~~~~~~~G-~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 51 VDVIGLSSLSGGHMTL-FPEVIELLRELGAGDILVVGGGI-IPPEDYELLKEMG-VAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCEEEEcccchhhHHH-HHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHHHCC-CCEEECCCCCHHHHHHHHh
Confidence 3479999998644443 6999999998754344 445543 3455556665555 5578899999999998864
No 121
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=22.49 E-value=24 Score=38.57 Aligned_cols=96 Identities=33% Similarity=0.526 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEEEeccCCCC------
Q 001673 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGG------ 169 (1033)
Q Consensus 96 DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~IYyp~~~Gg------ 169 (1033)
+-..++++|+..|||+|.+.++... ++....- ..++.|+|.|.++-. |-.-+..||
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~~------------~ea~~~a-~~ig~PvvlKi~sp~-----i~HKsd~GgV~L~l~ 72 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTSA------------EEAVAAA-EEIGFPVVLKIVSPD-----IAHKSDVGGVRLNLN 72 (222)
T ss_dssp -HHHHHHHHHTTT------EEESSH------------HHHHHHH-HHH-SSEEEEEE-TT--------HHHHT-EEEEE-
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCCH------------HHHHHHH-HHhCCCEEEEEecCC-----CCcCCCCCcEEECCC
Confidence 3467999999999999999998762 1211110 012369999999864 111222221
Q ss_pred ---hHHHHHhhhCCCcccccCCccccccccceEEeeccCCCCeeeEE
Q 001673 170 ---GMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (1033)
Q Consensus 170 ---G~~~Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~~~G~DVKv 213 (1033)
.++.-|+.+-++-..+.|+. .-..+++|+-.+..|..+-+
T Consensus 73 ~~~~v~~a~~~l~~~~~~~~p~~----~~~gvlVq~m~~~~g~El~v 115 (222)
T PF13549_consen 73 SPEEVREAFERLRERVAAHHPGA----RIDGVLVQEMAPSGGRELIV 115 (222)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TT--------EEEEEE------EEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC----ccceEEEEEcccCCcEEEEE
Confidence 23334444433333333310 13457888887655655543
No 122
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=22.48 E-value=38 Score=38.86 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=44.1
Q ss_pred CCCEEEeeccccCcceEEEeccCCCChHHHHHhhhCCCcccccCCccccccc--cceEEeeccCCCCeeeEEEEECCceE
Q 001673 144 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPTGGTDVKVYTVGPEYA 221 (1033)
Q Consensus 144 ~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~~~~~r~~--gsyIyEEFi~~~G~DVKvytVGp~~v 221 (1033)
+.|+|.||+.|+ +|.|.+...+.+-+..-.-.+....++.+ -+.+.|+|. .|.|-++||.+.+..
T Consensus 87 giPyvg~gv~~S-----------a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~g 153 (317)
T COG1181 87 GIPYVGKGVLAS-----------AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREG 153 (317)
T ss_pred CCCEecCchhhh-----------hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCcc
Confidence 479999999999 89887644443322222222221122222 344444443 488899999999888
Q ss_pred EEeeccC
Q 001673 222 HAEARKS 228 (1033)
Q Consensus 222 hAe~RKS 228 (1033)
.+--|.-
T Consensus 154 SSvg~~~ 160 (317)
T COG1181 154 SSVGRSP 160 (317)
T ss_pred ceeeEEE
Confidence 7766543
No 123
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=22.35 E-value=28 Score=41.46 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCCCcEEEEec
Q 001673 98 RKVYEQLEKYGIPVPRYALVNR 119 (1033)
Q Consensus 98 ~~vlqiL~~~gIp~P~~~~~~r 119 (1033)
..+.++|++.|||+|+..++..
T Consensus 33 yqaK~LL~~~GIpvp~~~va~t 54 (422)
T PLN00124 33 YQGAELMSKYGVNVPKGAAASS 54 (422)
T ss_pred HHHHHHHHHcCCCCCCceeeCC
Confidence 4678999999999999998875
No 124
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=21.84 E-value=81 Score=38.83 Aligned_cols=184 Identities=15% Similarity=0.167 Sum_probs=111.3
Q ss_pred CcccCCcchhhHHhhHHHHHHHHHhCCCCCCcEEEEeccCCCcccccccccCCeEEEcceecCCCEEEeeccccCcceEE
Q 001673 82 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 161 (1033)
Q Consensus 82 p~~lNdl~~q~~l~DR~~vlqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~I~v~G~~~~kPfVeKpv~gedHni~I 161 (1033)
.|+==+..+...+=|+-.+-||..++|||+=.- .++ ...+.+...-.-..|+.|+.+|+.-|-
T Consensus 97 ~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG----~~g-------~~qs~e~~~~~a~eIgyPvMiKa~~GG------ 159 (670)
T KOG0238|consen 97 TFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPG----YHG-------EDQSDEEAKKVAREIGYPVMIKATAGG------ 159 (670)
T ss_pred eEECCCHHHHHHhcchHHHHHHHHhcCCccccC----ccc-------ccccHHHHHHHHHhcCCcEEEEeccCC------
Confidence 344446678888999999999999999995321 122 111222222112346689999999886
Q ss_pred EeccCCCChHHHHHhhhCCCcccccCCc----cccccccceEEeeccCC-CCeeeEEEEE-CCceEEEeeccCCCCCCee
Q 001673 162 YYPSSAGGGMKELFRKVGNRSSEFHPDV----RRVRREGSYIYEEFMPT-GGTDVKVYTV-GPEYAHAEARKSPVVDGVV 235 (1033)
Q Consensus 162 Yyp~~~GgG~~~Lfrkign~sS~~~p~~----~~~r~~gsyIyEEFi~~-~G~DVKvytV-Gp~~vhAe~RKSPvvDG~v 235 (1033)
-|.|. |++.+-+.-.-.|...- ..+ -+...+.|.||.. .--.|.||-= -++++|--.|-+- .=
T Consensus 160 -----GGkGM-ria~~~~ef~~~~~~ak~Ea~~sF-Gdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCS----vQ 228 (670)
T KOG0238|consen 160 -----GGKGM-RIAWSEEEFEEGLESAKQEAAKSF-GDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCS----VQ 228 (670)
T ss_pred -----CCcce-EeecChHHHHHHHHHHHHHHHhhc-CcchhhHHHhccCCceEEEEEEecCCCcEEEecccccc----hh
Confidence 44455 45543322111111000 012 2445688999987 4444444422 1456777778774 34
Q ss_pred eecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCeeee-Ee-eeeeCCCeEEEeecCceecc
Q 001673 236 MRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FD-LLRCEGRSYVCDVNGWSFVK 293 (1033)
Q Consensus 236 rrN~hgke~r~~v~Lt~~Ek----~iA~k~~~afgq~VCG-fD-LLRs~g~s~V~DVNGwSFVK 293 (1033)
|||--==|.+-.-.|+++=+ +-|.++|+|.|-.=+| |. |+.+.+..|.+|+|--=-|-
T Consensus 229 RRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVE 292 (670)
T KOG0238|consen 229 RRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVE 292 (670)
T ss_pred hhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeec
Confidence 66665556665566666544 5689999999987777 33 44568899999999654443
No 125
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=21.82 E-value=43 Score=39.42 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCCCcEEEEec
Q 001673 99 KVYEQLEKYGIPVPRYALVNR 119 (1033)
Q Consensus 99 ~vlqiL~~~gIp~P~~~~~~r 119 (1033)
.+.++|++.|||+|++.++..
T Consensus 7 eak~lL~~yGIpvp~~~~~~~ 27 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYS 27 (392)
T ss_pred HHHHHHHHcCCCCCCceEECC
Confidence 467899999999999999875
No 126
>PRK01295 phosphoglyceromutase; Provisional
Probab=21.64 E-value=68 Score=34.05 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||+=.|++-||++++..+
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 53 IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred EEEeCCcHHHHHHHHHHHHHc
Confidence 599999999999999998754
No 127
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=21.37 E-value=69 Score=35.24 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHhhh
Q 001673 522 KIYSSDEGRVQMSAAAFAKGL 542 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakgl 542 (1033)
.||||+=.|++.||++++..+
T Consensus 51 ~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 51 VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred EEEEcCCHHHHHHHHHHHHHc
Confidence 699999999999999998654
No 128
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=20.54 E-value=79 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEeecCCchHHHHHHHHHhhhc
Q 001673 522 KIYSSDEGRVQMSAAAFAKGLL 543 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakglL 543 (1033)
.||||+=.|++.||++++.++.
T Consensus 156 ~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 156 AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred EEEEcCcHHHHHHHHHHHHhCC
Confidence 5999999999999999987763
No 129
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=20.37 E-value=82 Score=38.18 Aligned_cols=30 Identities=33% Similarity=0.314 Sum_probs=26.1
Q ss_pred eEeecCCchHHHHHHHHHhhhcccCCCCCc
Q 001673 522 KIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (1033)
Q Consensus 522 KIysSdEgRVq~TAaaFakglL~legeLtP 551 (1033)
-|+|+.--||..||++||-||.+-.+-.-|
T Consensus 162 ~i~tt~~~R~~dSA~~F~~GLfg~~~~~~t 191 (467)
T KOG1382|consen 162 NINTTASQRVVDSAQAFAYGLFGEDHFNIT 191 (467)
T ss_pred EeeccchHHHHHHHHHHHhhhccccccCCC
Confidence 488999999999999999999987766556
Done!