Query 001673
Match_columns 1033
No_of_seqs 244 out of 412
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 16:12:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001673.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_971-975//hhsearch_pdb/001673hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t7a_A Inositol pyrophosphate 1.0 1 1 943.4 25.4 324 3-333 4-327 (330)
2 2p0a_A Synapsin-3, synapsin II 1.0 1 1 230.9 13.6 224 56-317 85-323 (344)
3 1pk8_A RAT synapsin I; ATP bin 1.0 1 1 230.6 11.6 222 55-316 179-417 (422)
4 1i7n_A Synapsin II; synapse, p 1.0 1 1 227.1 12.0 220 54-313 66-302 (309)
5 2q7d_A Inositol-tetrakisphosph 1.0 1 1 206.6 16.7 274 4-314 16-335 (346)
6 3ln6_A Glutathione biosynthesi 1.0 1 1 172.1 5.6 179 83-288 471-720 (750)
7 3ln7_A Glutathione biosynthesi 1.0 1 1 171.1 4.6 176 86-288 479-726 (757)
8 1z2n_X Inositol 1,3,4-trisphos 1.0 1 1 163.2 15.8 248 1-293 6-305 (324)
9 1uc8_A LYSX, lysine biosynthes 1.0 1 1 154.5 16.6 239 21-291 11-258 (280)
10 3r5x_A D-alanine--D-alanine li 1.0 1 1 142.5 6.9 270 6-310 3-299 (307)
No 1
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=1.00 E-value=1 Score=943.43 Aligned_cols=324 Identities=57% Similarity=1.044 Sum_probs=313.5
Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCC
Q ss_conf 88826999963486548954899999861169738998176135348875567767110345689936999999987199
Q 001673 3 VHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKP 82 (1033)
Q Consensus 3 ~~~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~g~f~vivF~d~vIL~e~Ve~wP~~D~lIsf~s~gfpl~kai~y~~lr~p 82 (1033)
.+++++||||||++||+|||||+||+||.++++|++|||+|+||||+|||+||+|||||||||+||||+|||+|+++|+|
T Consensus 4 ~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr~p 83 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP 83 (330)
T ss_dssp --CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHHCC
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99864999976466001678999999743469679999479734369733187677887762579857999999987499
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEECCCCEEEEECCCCCCCEEEE
Q ss_conf 42589622567765999999999589999868998246787666532346884899264617877994033367512798
Q 001673 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (1033)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IY 162 (1033)
|||||+.+|.++|||+++||+|+++|||+|+|++++|++..+....+++.+|+++++|++|+||||+||++|+|||||||
T Consensus 84 ~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iy 163 (330)
T 3t7a_A 84 FVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIY 163 (330)
T ss_dssp EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBTTCCCCEEE
T ss_pred CEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCHHHHHCCCCCCCCEEECCCCCCCCCCEEE
T ss_conf 66677999998877999999999769999998999578787665311033024542430146873683654456751145
Q ss_pred ECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCCEEEECCCCC
Q ss_conf 01578891999985618975221377433345643488540478970138999887447876212899998465268999
Q 001673 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 242 (1033)
Q Consensus 163 yp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgk 242 (1033)
||++||||+++||||+||+||+|+|++ .+|++++|||||||+++|+||||||||++|||||+|+||++||+||||+|||
T Consensus 164 yp~s~GgG~~RLfrki~n~sS~~~~~~-~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp~~~G~~r~N~~gG 242 (330)
T 3t7a_A 164 YPTSAGGGSQRLFRKIGSRSSVYSPES-NVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGK 242 (330)
T ss_dssp CCGGGTCCEEEEEEEETTEEEEEESCC-SCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECTTSSCBCCBCTTSC
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHH-HHCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEEECCCCCCCEEECCCCC
T ss_conf 024468755545455077221137556-4224785899815589992689999999989999985888888278747888
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 31114628998899999999993790416856641899089951471201266466999999999999984089999999
Q 001673 243 EVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAI 322 (1033)
Q Consensus 243 e~r~~v~Lt~~Ek~iA~kv~~afgq~VcGfDLLRs~g~s~V~DVNGwSFVK~n~kYYDdcA~IL~~~~l~~~~~~~~~~~ 322 (1033)
|+|++++||++|+++|++||+||||+||||||||++++|||||||||||||+|.+|||+||.|||.+|+++++|++
T Consensus 243 ~~~~~v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~~~~V~EVNg~~fvk~~~~yyd~~a~il~~~~~~~~~~~~---- 318 (330)
T 3t7a_A 243 EVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAKILGNIVMRELAPQF---- 318 (330)
T ss_dssp BCCEECCCCHHHHHHHHHHHHHTTBSEEEEEEEEETTEEEEEEEEESCCCSSCHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC----
T ss_conf 5022446999999999999999699647899999899628998379950268436899999999999999757135----
Q ss_pred CCCCCCCCCCC
Q ss_conf 99999887899
Q 001673 323 PPILPWKVNEP 333 (1033)
Q Consensus 323 p~~lp~~~~~~ 333 (1033)
++||+++.+
T Consensus 319 --~~~~~~~~~ 327 (330)
T 3t7a_A 319 --HIPWSIPLE 327 (330)
T ss_dssp --TCCCCC---
T ss_pred --CCCCCCCCC
T ss_conf --776037777
No 2
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=230.90 Aligned_cols=224 Identities=14% Similarity=0.120 Sum_probs=173.9
Q ss_pred CCCEEECCCCCCC-----CHHHHHHHHHHCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCC---CCCCEEEEECCCCC
Q ss_conf 7671103456899-----36999999987199425896225677659----999999995899---99868998246787
Q 001673 56 ICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPY 123 (1033)
Q Consensus 56 ~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---p~P~~~~~~rd~p~ 123 (1033)
..|++|.+-.+.. ....++++++.++.+++|++.+....+|| ...+++|.+.|+ |+|.+.+...
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~---- 160 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPN---- 160 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESS----
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCC----
T ss_conf 8878999524432132014999999998789603388899986379307899999999977997799897774276----
Q ss_pred CCCCCCCCCCCEEEECCEECCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCEEEEE
Q ss_conf 6665323468848992646178779940333675127980157889199998561897522137743334-564348854
Q 001673 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 202 (1033)
Q Consensus 124 ~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r-~~gsyIyEE 202 (1033)
..+.+.. ++.|+|.||++|. +|.|+. |.+......+..+ .+. .+..++.||
T Consensus 161 --------~~~~~~~----~g~PvVvK~~~Gs-----------~G~GV~-lve~~~~~~~~~~----~~~~~~~~~~vQe 212 (344)
T 2p0a_A 161 --------HKPMVTA----PHFPVVVKLGHAH-----------AGMGKI-KVENQLDFQDITS----VVAMAKTYATTEA 212 (344)
T ss_dssp --------STTCCCC----SSSSEEEEESSCC-----------TTTTEE-EECSHHHHHHHHH----HHHHHTCCEEEEE
T ss_pred --------HHHHHHC----CCCCEEEEECCCC-----------CEECEE-EECCHHHHHHHHH----HHHCCCCEEEEEE
T ss_conf --------5555332----4998899958897-----------314749-9789999999999----9851497599982
Q ss_pred CCCCCCEEEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCHHHHHHHHHHHHHH-CCEEEEEEEEEECCC-
Q ss_conf 047897013899988744787621289999846526899931114628998899999999993-790416856641899-
Q 001673 203 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR- 280 (1033)
Q Consensus 203 Fi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~kv~~af-gq~VcGfDLLRs~g~- 280 (1033)
||+ .|.|+||++||++++ |+.|+++ .|.|+.|++ ++...++.+|++++++|.+++++| |+.+||||||++.+|
T Consensus 213 fI~-~g~DiRv~VVGg~vv-a~~R~~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~G~ 287 (344)
T 2p0a_A 213 FID-SKYDIRIQKIGSNYK-AYMRTSI--SGNWKANTG-SAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 287 (344)
T ss_dssp CCC-EEEEEEEEEETTEEE-EEEEEES--SSCSSTTSS-SEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSC
T ss_pred CCC-CCCCEEEEEECCEEE-EEEEECC--CCCCEECCC-CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 048-995279999999999-9999648--998752677-53777617998999999999998279978999889738998
Q ss_pred EEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0899514712012664669999999999999840899
Q 001673 281 SYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPH 317 (1033)
Q Consensus 281 s~V~DVNGwSFVK~n~kYYDdcA~IL~~~~l~~~~~~ 317 (1033)
.||||||+ ||.=+-.....+++.-+-+.+++.+..+
T Consensus 288 ~~VlEVN~-~~~P~~~~~~~~~~~~Ia~~ii~~i~~~ 323 (344)
T 2p0a_A 288 DYIIEVMD-SSMPLIGEHVEEDRQLMADLVVSKMSQL 323 (344)
T ss_dssp EEEEEEEC-TTCCCCGGGHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999868-9887644244557999999999999976
No 3
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=1.00 E-value=1 Score=230.58 Aligned_cols=222 Identities=15% Similarity=0.147 Sum_probs=170.8
Q ss_pred CCCCEEECCCCCCC-----CHHHHHHHHHHCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCC---CCCCEEEEECCCC
Q ss_conf 77671103456899-----36999999987199425896225677659----999999995899---9986899824678
Q 001673 55 PICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVP 122 (1033)
Q Consensus 55 P~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---p~P~~~~~~rd~p 122 (1033)
...|++|.+-.+.. ....++++++..+.+++|++.+..+.+|| ...+++|.+.|+ |+|.+.+...
T Consensus 179 ~~~DaviiR~~~~~~~~~~~yr~vlr~lE~~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~--- 255 (422)
T 1pk8_A 179 LKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPN--- 255 (422)
T ss_dssp ECCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS---
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCC---
T ss_conf 57878999513321132024999999998789612388899997479327899999999857997799886673276---
Q ss_pred CCCCCCCCCCCCEEEECCEECCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCEEEE
Q ss_conf 76665323468848992646178779940333675127980157889199998561897522137743334-56434885
Q 001673 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYE 201 (1033)
Q Consensus 123 ~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r-~~gsyIyE 201 (1033)
..+.+.. ++.|+|+||+.|. +|.|+. |.+......+..+ .++ .+..++.|
T Consensus 256 ---------~~~~i~~----~g~PvVvKp~~GS-----------~G~GV~-lve~~~~l~~ii~----~~~~~~~~~~vQ 306 (422)
T 1pk8_A 256 ---------HKEMLSS----TTYPVVVKMGHAH-----------SGMGKV-KVDNQHDFQDIAS----VVALTKTYATAE 306 (422)
T ss_dssp ---------GGGCCCC----SSSSEEEEESSCC-----------TTTTEE-EECSHHHHHHHHH----HHHHHTSCEEEE
T ss_pred ---------HHHHHHC----CCCCEEEEECCCC-----------CEECEE-EECCHHHHHHHHH----HHHCCCCEEEEE
T ss_conf ---------5665541----5998899818897-----------314849-9679999999999----984249659998
Q ss_pred ECCCCCCEEEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCHHHHHHHHHHHHHH-CCEEEEEEEEEECCC
Q ss_conf 4047897013899988744787621289999846526899931114628998899999999993-790416856641899
Q 001673 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR 280 (1033)
Q Consensus 202 EFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~kv~~af-gq~VcGfDLLRs~g~ 280 (1033)
|||+ .|.||||++||++|+ |+.|+++ .|.|+.|++ ++...++.++++++++|.+++++| |+.+||||||++.+|
T Consensus 307 EfI~-~g~DIRv~VVGg~vv-a~~Rr~~--~g~WrtNvg-~g~~e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~dG 381 (422)
T 1pk8_A 307 PFID-AKYDVRVQKIGQNYK-AYMRTSV--SGNWKTNTG-SAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDG 381 (422)
T ss_dssp ECCC-EEEEEEEEEETTEEE-EEEEEES--SSCSSTTSS-CEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTS
T ss_pred EECC-CCCEEEEEEECCEEE-EEEEECC--CCCCEECCC-CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 5128-994289999999999-9999827--997454367-6156651799899999999999817997899988973899
Q ss_pred -EEEEEECC--CEECCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -08995147--1201266466999999999999984089
Q 001673 281 -SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAKAP 316 (1033)
Q Consensus 281 -s~V~DVNG--wSFVK~n~kYYDdcA~IL~~~~l~~~~~ 316 (1033)
.||||||+ --+.++.. .+.+.-+.++++..+..
T Consensus 382 ~~~VlEVN~s~~P~~~g~~---~~~~~~IA~~ii~~i~~ 417 (422)
T 1pk8_A 382 RDHIIEVVGSSMPLIGDHQ---DEDKQLIVELVVNKMTQ 417 (422)
T ss_dssp CEEEEEEECTTCCCCTTCH---HHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECCCCCCCCCCHH---HHHHHHHHHHHHHHHHH
T ss_conf 8799998789888753145---66799999999999998
No 4
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=1.00 E-value=1 Score=227.06 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=171.0
Q ss_pred CCCCCEEECCCCCCC-----CHHHHHHHHHHCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCC---CCCCEEEEECCC
Q ss_conf 677671103456899-----36999999987199425896225677659----999999995899---998689982467
Q 001673 54 WPICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREV 121 (1033)
Q Consensus 54 wP~~D~lIsf~s~gf-----pl~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~lqiL~~~gI---p~P~~~~~~rd~ 121 (1033)
.+..|++|.+-.+.. ....++++++.++.+++|++.+....+|| ...+++|.+.|+ |+|.+.+...
T Consensus 66 ~~~~D~vi~R~~~~~~~~~~~~r~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~-- 143 (309)
T 1i7n_A 66 SFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPN-- 143 (309)
T ss_dssp EECCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS--
T ss_pred ECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECC--
T ss_conf 116889999503432234413999999998789603388899997479417899999999967997799897775077--
Q ss_pred CCCCCCCCCCCCCEEEECCEECCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCEEE
Q ss_conf 876665323468848992646178779940333675127980157889199998561897522137743334-5643488
Q 001673 122 PYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIY 200 (1033)
Q Consensus 122 p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r-~~gsyIy 200 (1033)
..+.+.. ++.|+|.||++|. +|.|+. |.+......+..+ .++ .+..++.
T Consensus 144 ----------~~~~~~~----~g~PvVvK~~~Gs-----------~G~GV~-lv~~~~~~~~~~~----~~~~~~~~~~v 193 (309)
T 1i7n_A 144 ----------HREMLTL----PTFPVVVKIGHAH-----------SGMGKV-KVENHYDFQDIAS----VVALTQTYATA 193 (309)
T ss_dssp ----------GGGGSSC----CCSSEEEEESSCS-----------TTTTEE-EECSHHHHHHHHH----HHHHHTCCEEE
T ss_pred ----------HHHHHHC----CCCCEEEEECCCC-----------CEECEE-EECCHHHHHHHHH----HHHCCCCEEEE
T ss_conf ----------6566432----5998899968997-----------513859-9789999999999----98425974999
Q ss_pred EECCCCCCEEEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCHHHHHHHHHHHHHH-CCEEEEEEEEEECC
Q ss_conf 54047897013899988744787621289999846526899931114628998899999999993-79041685664189
Q 001673 201 EEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEG 279 (1033)
Q Consensus 201 EEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~Ek~iA~kv~~af-gq~VcGfDLLRs~g 279 (1033)
||||+ .|.|+||++||++++ |+.|+|+ .|.|+.|.+ ++...++.+|++++++|.+++++| |+.+||||||++.+
T Consensus 194 QefI~-~g~DiRv~VvGg~v~-a~~Rr~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~ 268 (309)
T 1i7n_A 194 EPFID-AKYDIRVQKIGNNYK-AYMRTSI--SGNWKTNTG-SAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKD 268 (309)
T ss_dssp EECCC-EEEEEEEEEETTEEE-EEEEESS--CTTTSCSCC-CSSEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT
T ss_pred EEECC-CCCEEEEEEECCEEE-EEEEECC--CCCCEECCC-CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 95318-992289999999999-9999837--998742577-614565089989999999999982899789999898389
Q ss_pred C-EEEEEECC--CEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9-08995147--1201266466999999999999984
Q 001673 280 R-SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEA 313 (1033)
Q Consensus 280 ~-s~V~DVNG--wSFVK~n~kYYDdcA~IL~~~~l~~ 313 (1033)
| .||||||+ .-+.++... +.+.-+.++++..
T Consensus 269 g~~~V~EVN~~~~P~~~~~~~---~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 269 GKDYIFEVMDCSMPLIGEHQV---EDRQLITDLVISK 302 (309)
T ss_dssp SCEEEEEEECTTCCCCSSCHH---HHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCHHH---HHHHHHHHHHHHH
T ss_conf 988999987898898542224---4689999999999
No 5
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=1.00 E-value=1 Score=206.60 Aligned_cols=274 Identities=18% Similarity=0.238 Sum_probs=191.5
Q ss_pred CCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCCEEECCCCCCCC-----------HHH
Q ss_conf 882699996348654895489999986116973899817613534887556776711034568993-----------699
Q 001673 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYP-----------LEK 72 (1033)
Q Consensus 4 ~~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~g~f~vivF~d~vIL~e~Ve~wP~~D~lIsf~s~gfp-----------l~k 72 (1033)
.+..+||.|--.+|.++--.+.++..+.+.| ++++.+.-. .+......+|++|+..+..++ ...
T Consensus 16 ~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G-~~~~~iD~~----~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~ 90 (346)
T 2q7d_A 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRG-MEVVQLNLS----RPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVH 90 (346)
T ss_dssp GTTCEEEEECCHHHHHHHTHHHHHHHHHTTT-CEEEECCTT----SCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCC-CEEEECCCC----CCHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 6755999998766620554999999998679-489991456----41544589788996775533223467436779999
Q ss_pred HHHHHH--HCCCCCCCCCCHHHHHHHHHHHHHHHHHC-------CCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEEC
Q ss_conf 999998--71994258962256776599999999958-------999986899824678766653234688489926461
Q 001673 73 AESYAT--LRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF 143 (1033)
Q Consensus 73 ai~y~~--lr~p~~iNdl~~q~~l~DR~~~lqiL~~~-------gIp~P~~~~~~rd~p~~~~~~~~e~~d~i~v~G~~~ 143 (1033)
.++.+. ..+.+++|+..+...++||+..+++|.+. |||+|+++++....+. +..+.+...+ +
T Consensus 91 ~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~-------~~~~~~~~~~--l 161 (346)
T 2q7d_A 91 RFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGD-------DTMRLLEKNG--L 161 (346)
T ss_dssp HHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCT-------THHHHHHHTT--C
T ss_pred HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHH-------HHHHHHHHCC--C
T ss_conf 999999877990881889999986249999999984013245788799988998079878-------9999999628--8
Q ss_pred CCCEEEEECCCC---CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCE
Q ss_conf 787799403336---75127980157889199998561897522137743334564348854047897013899988744
Q 001673 144 WKPFVEKPVHGD---DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY 220 (1033)
Q Consensus 144 ~kPfVeKpv~ge---dHni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~ 220 (1033)
+.|+|.||+.|. -|++.+-+.. .. +. . .+..+++||||+.+|.|+|||+||+.+
T Consensus 162 g~P~VvKP~~g~Gs~s~~v~~v~~~----------------~~-l~----~--~~~~~lvQefI~~~G~dirv~VvG~~v 218 (346)
T 2q7d_A 162 TFPFICKTRVAHGTNSHEMAIVFNQ----------------EG-LN----A--IQPPCVVQNFINHNAVLYKVFVVGESY 218 (346)
T ss_dssp CSSEEEECSBCSSTTCCEEEEECSG----------------GG-TT----C----CCEEEEECCCCTTEEEEEEEETTEE
T ss_pred CCCEEEEECCCCCCEEEEEEEECCH----------------HH-HH----H--CCCCEEEEEEECCCCEEEEEEEECCEE
T ss_conf 8998998567786406546885388----------------99-97----5--479779998557998278999999999
Q ss_pred EEEEECCCCCCC-C-------EEEE-CCC-CCCEEE---------EEEC--CHHHHHHHHHHHHHHCCEEEEEEEEEEC-
Q ss_conf 787621289999-8-------4652-689-993111---------4628--9988999999999937904168566418-
Q 001673 221 AHAEARKSPVVD-G-------VVMR-NPD-GKEVRY---------PVLL--TPNEKQMAREVCIAFRQAVCGFDLLRCE- 278 (1033)
Q Consensus 221 vhAe~RKSPvvD-G-------~vrr-N~h-gke~r~---------~v~L--t~~Ek~iA~kv~~afgq~VcGfDLLRs~- 278 (1033)
++++.|..|... | .|.+ |.+ ++..++ ...+ +++.+++|.++++++|++++|||++++.
T Consensus 219 ~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~ 298 (346)
T 2q7d_A 219 TVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQ 298 (346)
T ss_dssp EEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTT
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 99997247776757555663113100003577543233344445435479839999999999998299667168886458
Q ss_pred -CCEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -990899514712012664669999999999999840
Q 001673 279 -GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAK 314 (1033)
Q Consensus 279 -g~s~V~DVNGwSFVK~n~kYYDdcA~IL~~~~l~~~ 314 (1033)
|++||+|||.|-=-++-.+|...++.+|.+..-+.-
T Consensus 299 ~g~~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~~~~ 335 (346)
T 2q7d_A 299 TGQHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQS 335 (346)
T ss_dssp TCCEEEEEEEESCCCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9977999984785423412299999999999862369
No 6
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=1.00 E-value=1 Score=172.07 Aligned_cols=179 Identities=20% Similarity=0.242 Sum_probs=135.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEECCCCEEEEECCCCCCCEEEE
Q ss_conf 42589622567765999999999589999868998246787666532346884899264617877994033367512798
Q 001673 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (1033)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IY 162 (1033)
...+...+..+.+||..+.++|.++|||+|++..+... . +..+.+ ...++.|+|+||..|.
T Consensus 471 tg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~--~-------ea~~~~---~~~~g~PvVVKP~~G~------- 531 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDR--K-------EALNYF---SQIQDKPIVVKPKSTN------- 531 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETT--T-------THHHHH---HHSSSSCEEEEETTCC-------
T ss_pred ECCCHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEECCH--H-------HHHHHH---HHHCCCCEEEEECCCC-------
T ss_conf 58799999999709999999999779699998998999--9-------999999---9864995899848999-------
Q ss_pred ECCCCCCHHHHHHHHHCCCCCCCCCCCC-CCCCCCCEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCC---------
Q ss_conf 0157889199998561897522137743-334564348854047897013899988744787621289999---------
Q 001673 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVD--------- 232 (1033)
Q Consensus 163 yp~~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvD--------- 232 (1033)
+|.|+. +++.+.+....... +. ..+.+..+|+||||+ |.|++|++||+++++|+.|.++.+-
T Consensus 532 ----~G~GV~-iv~~~~s~eel~~a-~~~~~~~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~e 603 (750)
T 3ln6_A 532 ----FGLGIS-IFKTSANLASYEKA-IDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQ 603 (750)
T ss_dssp ----SSSSCE-EESSCCCHHHHHHH-HHHHHHHCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHH
T ss_pred ----CCCCEE-EEECCCCHHHHHHH-HHHHHHHCCCEEEEECCC--CCEEEEEEECCEEEEEEEEECCEEECCCCCCHHH
T ss_conf ----977779-97078999999999-999875277399995467--9789999999999899998666576588657999
Q ss_pred ---------------------------------------------CE-----EEECCCCCCEEEEE--ECCHHHHHHHHH
Q ss_conf ---------------------------------------------84-----65268999311146--289988999999
Q 001673 233 ---------------------------------------------GV-----VMRNPDGKEVRYPV--LLTPNEKQMARE 260 (1033)
Q Consensus 233 ---------------------------------------------G~-----vrrN~hgke~r~~v--~Lt~~Ek~iA~k 260 (1033)
|. ++.|.+.|+....+ .++|+.+++|.+
T Consensus 604 LI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~ 683 (750)
T 3ln6_A 604 LVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAE 683 (750)
T ss_dssp HHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf 99862468433545557632245337899999972898133389998899752230168973064534479999999999
Q ss_pred HHHHHCCEEEEEEEEEEC---------CCEEEEEECC
Q ss_conf 999937904168566418---------9908995147
Q 001673 261 VCIAFRQAVCGFDLLRCE---------GRSYVCDVNG 288 (1033)
Q Consensus 261 v~~afgq~VcGfDLLRs~---------g~s~V~DVNG 288 (1033)
+++++|+.+||+||+..+ ++..|||||+
T Consensus 684 aa~~igl~~~GvDli~~di~~~~~~~~~~~~iiEvN~ 720 (750)
T 3ln6_A 684 MAEAMGAWVCGVDLIIPNATQAYSKDKKNATCIELNF 720 (750)
T ss_dssp HHHHHTCSSCEEEEEESCSSSCCCTTTTCCEEEEEES
T ss_pred HHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEEEECC
T ss_conf 9998499869999984476443434579828999758
No 7
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=1.00 E-value=1 Score=171.08 Aligned_cols=176 Identities=20% Similarity=0.224 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEECCCCEEEEECCCCCCCEEEEECC
Q ss_conf 89622567765999999999589999868998246787666532346884899264617877994033367512798015
Q 001673 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (1033)
Q Consensus 86 Ndl~~q~~l~DR~~~lqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~ 165 (1033)
+...+..+.+||....++|.++|||+|++..+... . +..+.+ ...++.|+|+||..|.
T Consensus 479 ~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~--~-------ea~~~~---~~~~g~PvVVKP~~g~---------- 536 (757)
T 3ln7_A 479 DSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSL--E-------KAVASY---ALFENRAVVIKPKSTN---------- 536 (757)
T ss_dssp SBSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCH--H-------HHHHGG---GGSSSSCEEEEESSCS----------
T ss_pred CHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCH--H-------HHHHHH---HHHCCCCEEEEECCCC----------
T ss_conf 88999999609999999999779699997997999--9-------999999---9861998899838999----------
Q ss_pred CCCCHHHHHHH-HHCCCCCCCCCCCC-CCCCCCCEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCC------------
Q ss_conf 78891999985-61897522137743-33456434885404789701389998874478762128999------------
Q 001673 166 SAGGGMKELFR-KVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV------------ 231 (1033)
Q Consensus 166 ~~GgG~~~Lfr-kign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvv------------ 231 (1033)
.|.|+. ++. ++.+....-. -+. ..+.+..+++||||+ |.|++|+++|+++++|+.|.+|-|
T Consensus 537 -~G~GV~-iv~~~v~~~eel~~-al~~a~~~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi 611 (757)
T 3ln7_A 537 -YGLGIT-IFQQGVQNREDFAK-ALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELV 611 (757)
T ss_dssp -TTTTCE-ECSSCCCCHHHHHH-HHHHHHHHCSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHH
T ss_pred -CCCCEE-EECCCCCCHHHHHH-HHHHHHHCCCCEEEEECCC--CCEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHHH
T ss_conf -978869-85378999999999-9999871599499997689--968999999999999999865212588865699999
Q ss_pred ------------------------------------------CCE-----EEECCCCCCEEEEE--ECCHHHHHHHHHHH
Q ss_conf ------------------------------------------984-----65268999311146--28998899999999
Q 001673 232 ------------------------------------------DGV-----VMRNPDGKEVRYPV--LLTPNEKQMAREVC 262 (1033)
Q Consensus 232 ------------------------------------------DG~-----vrrN~hgke~r~~v--~Lt~~Ek~iA~kv~ 262 (1033)
.|. ++.|.+.|+....+ .++|+.+++|.+++
T Consensus 612 ~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa 691 (757)
T 3ln7_A 612 AMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGIT 691 (757)
T ss_dssp HHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHH
T ss_conf 76156601256666764334545899999997399834469999999864255311696226254667999999999999
Q ss_pred HHHCCEEEEEEEEEEC---------CCEEEEEECC
Q ss_conf 9937904168566418---------9908995147
Q 001673 263 IAFRQAVCGFDLLRCE---------GRSYVCDVNG 288 (1033)
Q Consensus 263 ~afgq~VcGfDLLRs~---------g~s~V~DVNG 288 (1033)
+++|+.+||+|++..+ ++..|+|||+
T Consensus 692 ~~lGl~~~GvDli~~di~~p~~~~~~~~~iiEvN~ 726 (757)
T 3ln7_A 692 KAMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANF 726 (757)
T ss_dssp HHHTCSEEEEEEEESCSSSCCCSSTTTCEEEEEES
T ss_pred HHHCCCEEEEEEEECCCCCCCCCCCCCEEEEEECC
T ss_conf 98499889999996576543334679828999708
No 8
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=1.00 E-value=1 Score=163.25 Aligned_cols=248 Identities=18% Similarity=0.231 Sum_probs=165.9
Q ss_pred CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEE--EEECCCEEECCCCCCCC-CCCEEECCCCCCCCH-HHHHHH
Q ss_conf 98888269999634865489548999998611697389--98176135348875567-767110345689936-999999
Q 001673 1 MEVHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEV--IHFGDKVILEDPIEKWP-ICDCLIAFYSSGYPL-EKAESY 76 (1033)
Q Consensus 1 ~~~~~~~~iGVCAMd~Ka~SkPm~~IL~RL~~~g~f~v--ivF~d~vIL~e~Ve~wP-~~D~lIsf~s~gfpl-~kai~y 76 (1033)
|...+..+|||+.-+.+. |- .+...+.+.| +++ +++.-.. +...+- .+|+++...+..+.. ...++.
T Consensus 6 ~~~~~~m~i~il~~~~~~-s~---~l~~al~~~G-~~v~~~~~d~~~----~~~~~~~~~d~v~~~~~~~~~~~~~~l~~ 76 (324)
T 1z2n_X 6 MTTKQTVSLFIWLPESKQ-KT---LFISTKNHTQ-FELNNIIFDVTL----STELPDKEPNAIITKRTHPVGKMADEMRK 76 (324)
T ss_dssp ----CEEEEEEECCHHHH-HH---HBSSCCSEEE-EEETTEEEEEEE----ESSCCSSCCSEEEECCSCSSSHHHHHHHH
T ss_pred CCCCCCEEEEEEECHHHH-HH---HHHHHHHHCC-CEEEEEEECCCC----CCCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 663776799999752655-53---4898877569-489999965898----71214897519999454418999999999
Q ss_pred HHH--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEECCCCEEEEECCC
Q ss_conf 987--199425896225677659999999995899998689982467876665323468848992646178779940333
Q 001673 77 ATL--RKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154 (1033)
Q Consensus 77 ~~l--r~p~~iNdl~~q~~l~DR~~~lqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~g 154 (1033)
+.. .+..++|+.....++.||...+++|.++|||+|++..++.. . +..+.+.-.| ++.|+|+||..|
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~--~-------~~~~~~~~~~--~~~P~vvKP~~g 145 (324)
T 1z2n_X 77 YEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSK--E-------EVIQLLQSKQ--LILPFIVKPENA 145 (324)
T ss_dssp HHHHCTTSEEETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSH--H-------HHHHHHHTTC--SCSSEEEEESBC
T ss_pred HHHHCCCCEEECCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEECCH--H-------HHHHHHHHCC--CCCCEEEEECCC
T ss_conf 9985899768587999998738999999999779899997996777--8-------8999999749--999889966888
Q ss_pred CC----CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCEEEEEECCCCC
Q ss_conf 67----51279801578891999985618975221377433345643488540478970138999887447876212899
Q 001673 155 DD----HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPV 230 (1033)
Q Consensus 155 ed----Hni~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPv 230 (1033)
.. +++.+..... ++. ..+..+|+||||+..|.|++|+++|+++.+++ |+++.
T Consensus 146 ~g~~~s~gv~~v~~~~-----------------~l~------~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~-~~~~~ 201 (324)
T 1z2n_X 146 QGTFNAHQMKIVLEQE-----------------GID------DIHFPCLCQHYINHNNKIVKVFCIGNTLKWQT-RTSLP 201 (324)
T ss_dssp SSSSGGGEEEEECSGG-----------------GGT------TCCSSEEEEECCCCTTCEEEEEEETTEEEEEE-ECCCC
T ss_pred CCCCCCEEEEEEECHH-----------------HHH------HCCCCEEEEECCCCCCCEEEEEEECCEEEEEE-ECCCC
T ss_conf 7886432049973898-----------------986------32897899975178996899999999999999-13866
Q ss_pred -C-----------------------------------CCEEEECCCCCCEEEEEECC-HHHHHHHHHHHHHHCCEEEEEE
Q ss_conf -9-----------------------------------98465268999311146289-9889999999999379041685
Q 001673 231 -V-----------------------------------DGVVMRNPDGKEVRYPVLLT-PNEKQMAREVCIAFRQAVCGFD 273 (1033)
Q Consensus 231 -v-----------------------------------DG~vrrN~hgke~r~~v~Lt-~~Ek~iA~kv~~afgq~VcGfD 273 (1033)
+ .+.++.|.+. +...+..++ ++.+++|.++++++|...||||
T Consensus 202 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD 280 (324)
T 1z2n_X 202 NVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILE-DPILLNLTSEAEMRDLAYKVRCALGVQLCGID 280 (324)
T ss_dssp CCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCS-CTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 44578866503215300233305555534334331134540003366-87555679979999999999998499677168
Q ss_pred EEEE-C-CCEEEEEEC---CCEECC
Q ss_conf 6641-8-990899514---712012
Q 001673 274 LLRC-E-GRSYVCDVN---GWSFVK 293 (1033)
Q Consensus 274 LLRs-~-g~s~V~DVN---GwSFVK 293 (1033)
++.. . |.+||+||| ||.-.-
T Consensus 281 ~~~~~~~g~~~vlEvN~~Pg~~~~~ 305 (324)
T 1z2n_X 281 FIKENEQGNPLVVDVNVFPSYGGKV 305 (324)
T ss_dssp EECGGGCSSCEEEEEEESCCTTSCB
T ss_pred EEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 9977588988999974898767888
No 9
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=1.00 E-value=1 Score=154.47 Aligned_cols=239 Identities=21% Similarity=0.208 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCC-EEEC--CCCCCCCCCC-EEECCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 548999998611697389981761-3534--8875567767-11034568993699999998719942589622567765
Q 001673 21 APMGQILDRLQAFGEFEVIHFGDK-VILE--DPIEKWPICD-CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHD 96 (1033)
Q Consensus 21 kPm~~IL~RL~~~g~f~vivF~d~-vIL~--e~Ve~wP~~D-~lIsf~s~gfpl~kai~y~~lr~p~~iNdl~~q~~l~D 96 (1033)
...+.+...+.+.| ++++++... .... .....|+.+| ++++.+++. ....+.+.++..+..++|+.....+.+|
T Consensus 11 ~~~~~~~~a~~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~d 88 (280)
T 1uc8_A 11 PDERMLFERAEALG-LPYKKVYVPALPMVLGERPKELEGVTVALERCVSQS-RGLAAARYLTALGIPVVNRPEVIEACGD 88 (280)
T ss_dssp HHHHHHHHHHHHHT-CCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHH-HHHHHHHHHHHTTCCEESCHHHHHHHHB
T ss_pred HHHHHHHHHHHHCC-CCEEEEEHHHCEEECCCCCCCCCCCCEEEECCCCCH-HHHHHHHHHHHCCCCEECCHHHHHHHCC
T ss_conf 89999999999769-947997014603332678763678999998786502-3699999999879946089999988478
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEECCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 99999999958999986899824678766653234688489926461787799403336751279801578891999985
Q 001673 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176 (1033)
Q Consensus 97 R~~~lqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d~i~v~G~~~~kPfVeKpv~gedHni~IYyp~~~GgG~~~Lfr 176 (1033)
|....++|.+.|||+|++..++.. . +....+. .++.|+|+||..|. .|.|+. +.+
T Consensus 89 K~~~~~~l~~~gi~~p~~~~~~~~--~-------~~~~~~~----~~~~p~vvKp~~g~-----------~~~gv~-~v~ 143 (280)
T 1uc8_A 89 KWATSVALAKAGLPQPKTALATDR--E-------EALRLME----AFGYPVVLKPVIGS-----------WGRLLA-XXX 143 (280)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH--H-------HHHHHHH----HHCSSEEEECSBCC-----------BCSHHH-HHH
T ss_pred HHHHHHHHHHCCCCCCCEEEECCH--H-------HHHHHHH----HHCCCEEEEECCCC-----------CCCCCE-ECC
T ss_conf 999999999869699995852899--9-------9999999----74998899978999-----------856634-303
Q ss_pred HHCCCCCCCCCCCCCCC--CCCCEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCHHH
Q ss_conf 61897522137743334--5643488540478970138999887447876212899998465268999311146289988
Q 001673 177 KVGNRSSEFHPDVRRVR--REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE 254 (1033)
Q Consensus 177 kign~sS~~~p~l~~~r--~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG~vrrN~hgke~r~~v~Lt~~E 254 (1033)
....-...+.. +.... .+..+|+||||+..+.+++++++|+++.++..|++ +.++.|.+.++...|..|+++-
T Consensus 144 ~~~el~~~~~~-~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~----~~~~~~~~~g~~~~p~~l~~~~ 218 (280)
T 1uc8_A 144 XXXXXXXXXXX-KEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS----AHWITNTARGGQAENCPLTEEV 218 (280)
T ss_dssp HHHC-------------CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC------------------CEECCCCHHH
T ss_pred CCCCCCHHHHH-HHHHCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEEEC----CCCCCCCCCCCCCCCCCCCHHH
T ss_conf 22221002566-766403678839998323799902999999999999999936----8833553478601578989999
Q ss_pred HHHHHHHHHHHCCEEEEEEEEEECCCEEEEEEC---CCEE
Q ss_conf 999999999937904168566418990899514---7120
Q 001673 255 KQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVN---GWSF 291 (1033)
Q Consensus 255 k~iA~kv~~afgq~VcGfDLLRs~g~s~V~DVN---GwSF 291 (1033)
+++|.++++++|..++|+|++...+++||+||| ||+.
T Consensus 219 ~~~~~~~~~~lg~g~~~vD~~~~~~g~~~iEiN~r~g~~~ 258 (280)
T 1uc8_A 219 ARLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHTMEFKN 258 (280)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEETTCCCTT
T ss_pred HHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEECCCCCCC
T ss_conf 9999999997399768999998089759999718987511
No 10
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=1.00 E-value=1 Score=142.47 Aligned_cols=270 Identities=15% Similarity=0.178 Sum_probs=174.4
Q ss_pred EEEEEEEECC----CCCCCHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCCEEECCCCCCCCHH-HHHHHHHHC
Q ss_conf 2699996348----65489548999998611697389981761353488755677671103456899369-999999871
Q 001673 6 KITIGVCVME----KKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYATLR 80 (1033)
Q Consensus 6 ~~~iGVCAMd----~Ka~SkPm~~IL~RL~~~g~f~vivF~d~vIL~e~Ve~wP~~D~lIsf~s~gfpl~-kai~y~~lr 80 (1033)
+.+|+|-+=. .-+...--+.|+.-|.+.| ++++.++-.-. ...++....+|++++....++..+ .+...++..
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g-~~v~~i~~~~~-~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~ 80 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNK-YEIVPITLNEK-MDLIEKAKDIDFALLALHGKYGEDGTVQGTLESL 80 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTT-EEEEEEECSSG-GGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCCCC-HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 757999948898411748999999999998779-98999914685-0178760578999990788998378999999986
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC-EEEECCEECCCCEEEEECCCCCCC
Q ss_conf 99425-8962256776599999999958999986899824678766653234688-489926461787799403336751
Q 001673 81 KPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED-FVEVHGNRFWKPFVEKPVHGDDHS 158 (1033)
Q Consensus 81 ~p~~i-Ndl~~q~~l~DR~~~lqiL~~~gIp~P~~~~~~rd~p~~~~~~~~e~~d-~i~v~G~~~~kPfVeKpv~gedHn 158 (1033)
+..++ ++..+..+.+||....++|.++|||+|++..+... . +... .+. .++.|+|+||..|.
T Consensus 81 gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~--~-------~~~~~~~~----~~~~P~vvKP~~~~--- 144 (307)
T 3r5x_A 81 GIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKM--E-------DLNFDELD----KLGFPLVVKPNSGG--- 144 (307)
T ss_dssp TCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEESS--S-------CCCHHHHH----HHCSSEEEEECC-----
T ss_pred CCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECH--H-------HHHHHHHH----HCCCCEEEEECCCC---
T ss_conf 99856948999999719999999999879899997999573--5-------66577897----56998899709999---
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC-CCCCCCCEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCC--EE
Q ss_conf 27980157889199998561897522137743-3345643488540478970138999887447876212899998--46
Q 001673 159 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VV 235 (1033)
Q Consensus 159 i~IYyp~~~GgG~~~Lfrkign~sS~~~p~l~-~~r~~gsyIyEEFi~~~G~DVKvytVGp~~vhAe~RKSPvvDG--~v 235 (1033)
.|.|+. + +.+.. ++..-+. ..+.+..+|+||||+ |.++.|.++|+++.++..+... .+ .+
T Consensus 145 --------~s~Gv~-~---v~~~~-el~~~~~~~~~~~~~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~--~~~~~~ 207 (307)
T 3r5x_A 145 --------SSVGVK-I---VYDKD-ELISMLETVFEWDSEVVIEKYIK--GEEITCSIFDGKQLPIISIRHA--AEFFDY 207 (307)
T ss_dssp ----------CCCE-E---ECSHH-HHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEETTEECCCEEEEEE--EEEETT
T ss_pred --------CCCCEE-E---ECCHH-HHHHHHHHHHHCCCCEEEECCCC--CEEEEEEEECCEEEEEEEEECC--CCCCCH
T ss_conf --------888989-8---18999-99999999984399899987818--7799999999998667999718--863576
Q ss_pred EECC-CCCCEEEEEECCHHH----HHHHHHHHHHHCCE-EEEEEEEEECCCEEEEEECCC------EEC-----CCCHHH
Q ss_conf 5268-999311146289988----99999999993790-416856641899089951471------201-----266466
Q 001673 236 MRNP-DGKEVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGW------SFV-----KNSYKY 298 (1033)
Q Consensus 236 rrN~-hgke~r~~v~Lt~~E----k~iA~kv~~afgq~-VcGfDLLRs~g~s~V~DVNGw------SFV-----K~n~kY 298 (1033)
+.+. ++|...+|..++++. +++|.++++++|.. ++++|++..+|++||+|||.. |.+ .....|
T Consensus 208 ~~~~~~~g~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~ 287 (307)
T 3r5x_A 208 NAKYDDASTIEEVIELPAELKERVNKASLACYKALKCSVYARVDMMVKDGIPYVMEVNTLPGMTQASLLPKSADAAGIHY 287 (307)
T ss_dssp EEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSCCCSTTSHHHHHHHHTTCCH
T ss_pred HHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHCCCCH
T ss_conf 65378999868568999999999999999999995998648889999999289999729999885579999999829999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 001673 299 YDDAACVLRKMF 310 (1033)
Q Consensus 299 YDdcA~IL~~~~ 310 (1033)
-+-++.||..-.
T Consensus 288 ~~li~~ll~~a~ 299 (307)
T 3r5x_A 288 SKLLDMIIETSL 299 (307)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
Done!