RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 001673
(1033 letters)
>gnl|CDD|215860 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch
2). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches.The smaller branch 2 contains predominantly
eukaryotic proteins. The catalytic functions in members
include phytase, glucose-1-phosphatase and multiple
inositol polyphosphate phosphatase. The in vivo roles of
the mammalian acid phosphatases in branch 2 are not
fully understood, although activity against
lysophosphatidic acid and tyrosine-phosphorylated
proteins has been demonstrated.
Length = 327
Score = 81.3 bits (201), Expect = 2e-16
Identities = 55/272 (20%), Positives = 88/272 (32%), Gaps = 78/272 (28%)
Query: 509 GLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLD 568
GLL ++ I SSD R SA AF GL EG D+ +LD
Sbjct: 73 GLLPDGYPP-SEVYIRSSDSNRTLASAQAFLAGLFPPEG----------DIDNDLLDWQP 121
Query: 569 NASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVT 628
+ + E K L ++ G CP + + K+V
Sbjct: 122 IPVVTLPEVKKALANLLLL--------GYDSCPAFDE---------------SLVEKRVD 158
Query: 629 EQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARW 688
++ +L E +A+ G+TN+ W
Sbjct: 159 PELAKLLAVYLEPIAKRL---------SQLLPGETNLT-----------------GLDVW 192
Query: 689 RKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNE 748
L+ L+ D + PD++ YD LH +L+ L+E + ++
Sbjct: 193 ALLDLCLFE--TNASDNSPFPDLFTG--YDALHLEYLSD--LEEYYGLS----------- 235
Query: 749 YGINPKQKLKIGSKIARRLLGKLLIDLRNTRE 780
GI P+ IG + LL +L L +
Sbjct: 236 -GIGPELAKLIGGPLLNELLKRLTNALVPDQT 266
Score = 45.1 bits (107), Expect = 1e-04
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 355 ELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRP 395
EL V V RHGDRTP + + L K+N
Sbjct: 1 ELEFVQVVSRHGDRTPTKSLPKDPEAWPFKLLSEKHNDFLN 41
Score = 41.7 bits (98), Expect = 0.001
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 23/90 (25%)
Query: 849 ANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELD 908
++ LYF ++ I L++ L L + L G S E
Sbjct: 261 LVPDQTRLDLKLYLYFAHDTTIAPLLSAL---GLFDQLPGLSS-------------GEPP 304
Query: 909 YMSYIVLRMFENTAVALEDPKRFRIELTFS 938
Y + +V ++++ K F + L ++
Sbjct: 305 YAARLVFELWQDG-------KEFYVRLLYN 327
>gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in
histidine acid phosphatases and phytases; contains a His
residue which is phosphorylated during the reaction.
Catalytic domain of HAP (histidine acid phosphatases)
and phytases (myo-inositol hexakisphosphate
phosphohydrolases). The conserved catalytic core of this
domain contains a His residue which is phosphorylated in
the reaction. Functions in this subgroup include roles
in metabolism, signaling, or regulation, for example
Escherichia coli glucose-1-phosphatase functions to
scavenge glucose from glucose-1-phosphate and the
signaling molecules inositol 1,3,4,5,6-pentakisphosphate
(InsP5) and inositol hexakisphosphate (InsP6) are in
vivo substrates for eukaryotic multiple inositol
polyphosphate phosphatase 1 (Minpp1). Phytases scavenge
phosphate from extracellular sources and are added to
animal feed while prostatic acid phosphatase (PAP) has
been used for many years as a serum marker for prostate
cancer. Recently PAP has been shown in mouse models to
suppress pain by functioning as an
ecto-5prime-nucleotidase. In vivo it dephosphorylates
extracellular adenosine monophosphate (AMP) generating
adenosine,and leading to the activation of A1-adenosine
receptors in dorsal spinal cord.
Length = 242
Score = 56.2 bits (136), Expect = 2e-08
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 509 GLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLD 568
LL LHS R DL I SSD R SA AF GL +G + ++ ++ + + D
Sbjct: 40 ELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDGWQPIAVHTIPEEEDDVSNLFD 99
Query: 569 NASIE 573
+ E
Sbjct: 100 LCAYE 104
Score = 37.0 bits (86), Expect = 0.031
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 355 ELRCVIAVMRHGDRTP 370
EL V + RHGDR P
Sbjct: 1 ELEQVQVLSRHGDRYP 16
Score = 34.7 bits (80), Expect = 0.18
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 839 ETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSAL 898
E RL + R + SH +++ +L L + +
Sbjct: 155 ELLARLTNG---PSGSQTFPLDRKLYLYFSHDTTILPLLTALGLFDFAEPLP-------P 204
Query: 899 ERLYKTKELDYMSYIVLRMFE 919
+ L E DY + +FE
Sbjct: 205 DFLRGFSESDYPPFAARLVFE 225
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 52.0 bits (125), Expect = 6e-07
Identities = 62/296 (20%), Positives = 100/296 (33%), Gaps = 59/296 (19%)
Query: 11 VCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLI-----AFYS 65
+ +++ S G+I + EVI ++I E+ + D +I F
Sbjct: 33 LAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDF 92
Query: 66 SGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQ--LEKYGIPVPRYALVNREVPY 123
+ L AE ++N+ PQ + R K+Y L K GIPVP +
Sbjct: 93 ATRFLRLAERKGV----PVIND--PQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPD-- 144
Query: 124 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSS 183
E F+ E P V KP+ G S G G+ V +
Sbjct: 145 -EAAEFVAE---------HLGFPVVLKPLDG-----------SGGRGVF----LVEDADP 179
Query: 184 EF--HPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG 241
E + I +E++P D + VG V + R P
Sbjct: 180 ELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVG--------GGEVVAIYALARIPAS 231
Query: 242 KEVR---------YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNG 288
+ R P LT E+++A + A + G D++ + YV +VN
Sbjct: 232 GDFRSNLARGGRAEPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNV 287
>gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain. This ATP-grasp domain
is found in the ribosomal S6 modification enzyme RimK.
Length = 190
Score = 46.3 bits (110), Expect = 2e-05
Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 34/206 (16%)
Query: 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155
D+ K ++ L K+GIPVP L + E F+E F P V K V G
Sbjct: 3 DKAKSHQLLAKHGIPVPNTGLAWSPE---------DAEKFIE-QIKGF--PVVVKSVFGS 50
Query: 156 --DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVK 212
+ S + E F+ + N + +EF+ G D++
Sbjct: 51 QGIGVFLAEDEQSLEQLL-EAFKWLKN----------------QILVQEFIAEAGNRDIR 93
Query: 213 VYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGF 272
VG E A R+S +G N V P L+ E+++A + A V G
Sbjct: 94 CLVVGGEVVGAIHRQSN--EGDFRTNLHRGGVAEPYQLSQEEEEIAIKAAQAMGLDVLGV 151
Query: 273 DLLRCEGRSYVCDVNGWSFVKNSYKY 298
D+ R + VC+VN +K +
Sbjct: 152 DIFRSKRGLLVCEVNSSPGLKGIERT 177
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 46.6 bits (111), Expect = 3e-05
Identities = 63/294 (21%), Positives = 97/294 (32%), Gaps = 66/294 (22%)
Query: 26 ILDRLQAFG-EFEVIHFGDKVI-LEDP---IEKWPICDCLIAFYSSG-YPLEKAESYATL 79
+ + + G +++V+ + + + + + I G ES
Sbjct: 16 LKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGV- 74
Query: 80 RKPFLVNELEPQHLLHDRRKV--YEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE 137
++N +L+ K + L K G+P PR L E IEE F
Sbjct: 75 ---PVINS--SDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPE---EALKLIEEIGF-- 124
Query: 138 VHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE 195
P V KPV G + +A + E F ++ + F
Sbjct: 125 --------PVVLKPVFGSWGRLVSLARDKQAAETLL-EHFEQLNGPQNLF---------- 165
Query: 196 GSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPD----------GKEVR 245
Y+ E GG D++V+ VG E V + R GK
Sbjct: 166 --YVQEYIKKPGGRDIRVFVVGDE-----------VIAAIYRITSGHWRTNLARGGKAEP 212
Query: 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSY-VCDVNGWSFVKNSYKY 298
P LT +++A + A V G DLL E R V +VN KNS K
Sbjct: 213 CP--LTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPNPEFKNSVKT 264
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 39.7 bits (93), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 512 RLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLD 544
L Y +IYSS R +A +GL +
Sbjct: 40 ALRERYIKFDRIYSSPLKRAIQTAEIILEGLFE 72
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 36.9 bits (86), Expect = 0.023
Identities = 42/224 (18%), Positives = 67/224 (29%), Gaps = 76/224 (33%)
Query: 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 152
D+ + E L G+PVP + LV+ ++LD EE F P V KP
Sbjct: 1 AFRDKALMRELLRAAGLPVPPFFLVD---DEEDLDAAAEEIGF----------PVVLKPR 47
Query: 153 HGDDHSIMIYYPSSAGGGMKELFRKVGNRS---SEFHPDVRRVRREGSYIYEEFMPTGGT 209
G S G +V + + + V Y+ EE++
Sbjct: 48 DGA---------GSLG------VFRVDSAAELEAALAALAAEVEDTREYLVEEYID---- 88
Query: 210 DVKVYTVGPEYAHAEARKSPVVDGVV------------------MRNPDGKEVRYPVLLT 251
G EY VDG+V +G E+
Sbjct: 89 -------GDEYH---------VDGLVDDGELVFLGVSRYLGPPPPDFSEGVELGSVSPGE 132
Query: 252 PNEKQMAREVC------IAFRQAVCGFDLLRC-EGRSYVCDVNG 288
+ RE+ + R V + +GR + ++N
Sbjct: 133 DPLPEALRELAERVLKALGLRNGVFHLEFFLTPDGRPVLLEINP 176
>gnl|CDD|193566 cd08019, M20_Acy1_subfamily5, M20 Peptidase Aminoacylase 1
subfamily. Peptidase M20 family, Uncharacterized
subfamily of bacterial proteins predicted as putative
amidohydrolases. These are a class of zinc binding
homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic
N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 372
Score = 35.2 bits (82), Expect = 0.16
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 900 RLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGADLSPLENDSEASSLHQEH 959
R + + + + R+ ++TA A E+T++ G P ND E S + +
Sbjct: 243 RTFSPETRKKVPEAIERIAKSTAEAY----GATAEVTYTYGT--PPTINDEELSKIARRA 296
Query: 960 TLPIMGPERLQEVGSYLTLEKMEKMIRPFAMPAEDF 995
I+G + L +MEK +EDF
Sbjct: 297 VTKILGED---------ALTEMEKT-----TGSEDF 318
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 35.0 bits (80), Expect = 0.19
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 678 SEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVA 737
+E +L +YA++ D++ + + S Y +LH A+ ++GLDE F V
Sbjct: 7 AEYYLSLYAKYNSKNLDVFR--------NMLQAIEPSGNYHILH-AYCGIKGLDERF-VE 56
Query: 738 QLLADGVIPNEYGINPKQKLKIGSKI-ARRLLGKLL 772
+LL G PNE + L I SKI R++ LL
Sbjct: 57 ELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLL 92
>gnl|CDD|216956 pfam02274, Amidinotransf, Amidinotransferase. This family contains
glycine (EC:2.1.4.1) and inosamine (EC:2.1.4.2)
amidinotransferases, enzymes involved in creatine and
streptomycin biosynthesis respectively. This family also
includes arginine deiminases, EC:3.5.3.6. These enzymes
catalyze the reaction: arginine + H2O <=> citrulline +
NH3. Also found in this family is the Streptococcus anti
tumour glycoprotein.
Length = 286
Score = 33.4 bits (77), Expect = 0.58
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 684 MYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELF 734
M+A R+ ER L ++ V D L + + LEG D +
Sbjct: 81 MFAPNRRRERRLD-ILILLKHPYKVQLVLD---ISELEDENAFLEGGDMVL 127
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 33.5 bits (77), Expect = 0.61
Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 41/195 (21%)
Query: 527 DEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIK 586
EGR + +LD EGQ T LV++D GL + ++E A L +++
Sbjct: 181 AEGRFDREISPVQAPVLDEEGQPTGETR-LVTRDQ----GLRDTTME---GLAGLKPVLE 232
Query: 587 SGSKMIH--------SNGSSDCPWM----ADGVGLPPNA---------SE---LLPKLVK 622
G IH S+G++ WM A +GL P A +E L V+
Sbjct: 233 GG---IHTAGTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGAEPYYHLDGPVQ 289
Query: 623 LTKKVTEQVRQLAKDEDEDLAETNPY--DVIPPYDQAKA--LGKTNIDVDRIAAGLPCGS 678
T KV E + K D DL E N V+ + Q + K N++ IA G P GS
Sbjct: 290 ATAKVLE--KAGMKIGDIDLVEINEAFASVVLSWAQVHEPDMDKVNVNGGAIALGHPVGS 347
Query: 679 EGFLLMYARWRKLER 693
G L+ +LER
Sbjct: 348 TGARLITTALHELER 362
>gnl|CDD|235876 PRK06849, PRK06849, hypothetical protein; Provisional.
Length = 389
Score = 32.7 bits (75), Expect = 1.1
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNR 142
L + E LLH++ + EQ G+ VP+ L+ P I F H
Sbjct: 103 VLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITD--PEA-----IRNFMFKTPH--- 152
Query: 143 FWKPFVEKPVHGD 155
P+V KP++
Sbjct: 153 --TPYVLKPIYSR 163
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 32.0 bits (73), Expect = 1.5
Identities = 53/275 (19%), Positives = 91/275 (33%), Gaps = 35/275 (12%)
Query: 26 ILDRLQAFG-EFEVIHFGDKVILED--PIEKWPICDCLIAFYSSGYPLEKAESYATLRKP 82
+++ L+ G + I+ + P E + D I S +
Sbjct: 15 LIEELEKLGLPYRKIYVPALPLPFGERPKELEDV-DVAIIRCVSQSRALYSARLLEALGV 73
Query: 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNR 142
++N D+ Y +L K G+P PR L + E +
Sbjct: 74 PVINSSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDR---EAALKLAEALGY------- 123
Query: 143 FWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEF-HPDVRRVRREGSYIYE 201
P V KPV G + G + L R S H +V + + +
Sbjct: 124 ---PVVLKPVIG------------SWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQ 168
Query: 202 EFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREV 261
E++ G D++V+ +G E A R S + G + P L +++A +
Sbjct: 169 EYINKPGRDIRVFVIGDEAIAAIYRYS---NHWRTNTARGGKA-EPCPLDEEVEELAVKA 224
Query: 262 CIAFRQAVCGFDLLRCEGRSYVCD-VNGWSFVKNS 295
A V D+ + R + + VN KNS
Sbjct: 225 AEAVGGGVVAIDIFESKERGLLVNEVNHVPEFKNS 259
>gnl|CDD|226304 COG3781, COG3781, Predicted membrane protein [Function unknown].
Length = 306
Score = 30.1 bits (68), Expect = 6.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 764 ARRLLGKLLIDLRN-TREEAISVAELKSSQDQVS 796
AR+L G+L+ +RN R+ V E S D
Sbjct: 82 ARKLWGQLVNAIRNLARQIWTLVPETLDSADVRE 115
>gnl|CDD|239172 cd02771, MopB_NDH-1_NuoG2-N7, MopB_NDH-1_NuoG2-N7: The second
domain of the NuoG subunit (with a [4Fe-4S] cluster, N7)
of the NADH-quinone oxidoreductase/NADH dehydrogenase-1
(NDH-1) found in various bacteria. The NDH-1 is the
first energy-transducting complex in the respiratory
chain and functions as a redox pump that uses the redox
energy to translocate H+ ions across the membrane,
resulting in a significant contribution to energy
production. In Escherichia coli NDH-1, the largest
subunit is encoded by the nuoG gene, and is part of the
14 distinct subunits constituting the functional enzyme.
The NuoG subunit is made of two domains: the first
contains three binding sites for FeS clusters (the fer2
domain), the second domain (this CD), is of unknown
function or, as postulated, has lost an ancestral
formate dehydrogenase activity that became redundant
during the evolution of the complex I enzyme. Unique to
this group, compared to the other prokaryotic and
eukaryotic groups in this domain protein family
(NADH-Q-OR-NuoG2), is an N-terminal [4Fe-4S] cluster
(N7/N1c) present in the second domain. Although only
vestigial sequence evidence remains of a molybdopterin
binding site, this protein domain belongs to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 472
Score = 30.0 bits (68), Expect = 6.4
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 15/135 (11%)
Query: 535 AAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHS 594
+AA GL E +K ++ G + S+E+ +A A L + +K +
Sbjct: 242 SAAGVSGLAPKEKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKALKRRGEN--- 298
Query: 595 NGSSDCPWMADGVGLPPNASELLP--KLVKLTKKVTEQVRQLAKDEDED---LAETNPYD 649
N+ LL V + +D D + + Y
Sbjct: 299 -----AGLT--LAVEEGNSPGLLLLGGHVTEPGLDLDGALAALEDGSADALIVLGNDLYR 351
Query: 650 VIPPYDQAKALGKTN 664
P AL
Sbjct: 352 SAPERRVEAALDAAE 366
>gnl|CDD|129443 TIGR00343, TIGR00343, pyridoxal 5'-phosphate synthase, synthase
subunit Pdx1. This protein had been believed to be a
singlet oxygen resistance protein. Subsequent work
showed that it is a protein of pyridoxine (vitamin B6)
biosynthesis, and that pyridoxine quenches the highly
toxic singlet form of oxygen produced by light in the
presence of certain chemicals [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 287
Score = 29.7 bits (67), Expect = 7.3
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 576 EAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLA 635
EA R+NE G+ MI + G + G G N E V+ +K+ E++RQ+
Sbjct: 126 EALRRINE----GAAMIRTKGEA-------GTG---NIVEA----VRHMRKINEEIRQIQ 167
Query: 636 KDEDEDLAETNPYDVIPPYD---QAKALGKTNIDVDRIAAGLPCGSEGFLLM 684
+E+ ++ P + + LGK + V+ A G+ ++ L+M
Sbjct: 168 NMLEEEDLAAVAKELRVPVELLLEVLKLGKLPV-VNFAAGGVATPADAALMM 218
>gnl|CDD|223292 COG0214, SNZ1, Pyridoxine biosynthesis enzyme [Coenzyme
metabolism].
Length = 296
Score = 29.6 bits (67), Expect = 7.7
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 28/103 (27%)
Query: 576 EAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLA 635
EA R++E G+ MI + G + G G N E V+ +K+ ++R+L
Sbjct: 136 EALRRISE----GAAMIRTKGEA-------GTG---NVVEA----VRHMRKINGEIRRLQ 177
Query: 636 KDEDEDLAE-----TNPYDVIPPYDQAKALGKTNIDVDRIAAG 673
+++L PY+++ + LG+ + V AAG
Sbjct: 178 SMTEDELYVVAKELQAPYELV---KEVAKLGR--LPVVNFAAG 215
>gnl|CDD|223609 COG0535, COG0535, Predicted Fe-S oxidoreductases [General function
prediction only].
Length = 347
Score = 29.6 bits (66), Expect = 8.0
Identities = 51/313 (16%), Positives = 93/313 (29%), Gaps = 48/313 (15%)
Query: 23 MGQILDRLQAFGEFEVIHF--GDKVILEDPIE------KWPICDCLIAFYSSGYPLEKAE 74
+++D L GE V+ F G+ ++ D +E K ++ + E E
Sbjct: 53 DLRVIDELAELGEIPVVIFTGGEPLLRPDLLEIVEYARKKGGIRVSLSTNGTLLTEEVLE 112
Query: 75 SYATLRKPFLV-----NELEPQHLLHDRRKVYEQ-------LEKYGIPVPRYALVNREVP 122
++ + E + + V+++ L++ GI V ++N V
Sbjct: 113 KLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILV----VINTTVT 168
Query: 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVH-GDDHSIMIYYPSSAGGGMKELFRKVGNR 181
D E D G F PV G+++ + P +E +
Sbjct: 169 KINYDELPEIADLAAELGVDELNVFPLIPVGRGEENLELDLTP-------EEEELLLVLL 221
Query: 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA------EARKSPVVDGVV 235
+R + E Y + + Y E P + +
Sbjct: 222 LRSAKYLLRGLPVEAPLFYGPLLLDFLFNGDPYECLAGRVSLAIDPDGEVYPCPFLPELG 281
Query: 236 MRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 295
+R KE+ LL + R + +CE R Y ++
Sbjct: 282 VREESFKEIWEESLLNK----------LRERDELLEGSCGKCEYREYCGGCRARAYELTG 331
Query: 296 YKYYDDAACVLRK 308
Y D C L K
Sbjct: 332 DIYGADPFCPLVK 344
>gnl|CDD|151671 pfam11229, DUF3028, Protein of unknown function (DUF3028). This
eukaryotic family of proteins has no known function.
Length = 589
Score = 30.0 bits (67), Expect = 8.5
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 553 LVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPN 612
+V+LV + ++ L + +I+ + RLNE+I++ +++I +G +GL N
Sbjct: 68 MVALVGSEGDVMQ-LKSEAIQNSHFQGRLNEVIRTLTQVISVSGV---------IGLQSN 117
Query: 613 ASELLPKL 620
A LL L
Sbjct: 118 AIWLLGHL 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 53,677,062
Number of extensions: 5453702
Number of successful extensions: 5184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5172
Number of HSP's successfully gapped: 36
Length of query: 1033
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 926
Effective length of database: 6,191,724
Effective search space: 5733536424
Effective search space used: 5733536424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)