BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001674
(1033 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 357 bits (915), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 174/271 (64%), Positives = 208/271 (76%), Gaps = 10/271 (3%)
Query: 114 KRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTA 173
+R E L SMCD+RARMLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTA
Sbjct: 8 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 67
Query: 174 FERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFA 233
FERPL SGVAYA +V+ ERE FE+Q W IK MD + EPSP+ +EYAPVIF+
Sbjct: 68 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFS 119
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QD+VS++ SLDM+SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK LP
Sbjct: 120 QDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPE 179
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN-- 351
N T ERI AT GYLGG FD+ESLVE LL QLA Q I V+VYDITN S P+ MYG+
Sbjct: 180 NPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDE 239
Query: 352 VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKA 382
+D L S L+FGDPFRKH+M CR+ QKA
Sbjct: 240 EADRSLSHESKLDFGDPFRKHKMICRYHQKA 270
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 7/144 (4%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 947
KIL+V+DN +N+ VA + +K+ G + G +A + +D MD+ MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI-NSSSYDLVLMDVCMPVLDGL 68
Query: 948 EATKIIREMEH--NFNNRIRRG-EVSIEAYENVS---NFHVPILAMTADVIQATYEECLR 1001
+AT++IR E N+N I G ++S E V +PI+AMTA+ + + EEC
Sbjct: 69 KATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECYA 128
Query: 1002 SGMDGYVSKPFEAEQLYREVSRFF 1025
+GMD ++SKP ++L + ++
Sbjct: 129 NGMDSFISKPVTLQKLRECLQQYL 152
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With Mg2+
Length = 206
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 36/162 (22%)
Query: 864 VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV--CVERGKK 921
+GN + + PS L G+++L+VDDN ++ KVA LK+ G + V C + GK+
Sbjct: 41 IGNPEDEQETSKPSDD--EFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQC-DSGKE 97
Query: 922 A----TELLMPPHQ--------FDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 969
A TE L + FD FMD QMPEMDG+EAT+ IR++E ++ R
Sbjct: 98 ALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVR------ 151
Query: 970 SIEAYENVSNFHVPILAMTA-DVIQATYEECLRSGMDGYVSK 1010
PI+A++ D E +++GMD ++ K
Sbjct: 152 ------------TPIIAVSGHDPGSEEARETIQAGMDAFLDK 181
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 60/274 (21%)
Query: 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINE 491
A+ K F+ VS+E+RTP+ ++G ++L + + +++V +A+ L I++
Sbjct: 36 AERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDD 95
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
VLD A++++G++ LE + +L + +Q GV LAV + V + GD
Sbjct: 96 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDV-GLIRGDGK 154
Query: 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHS 611
R Q + +L+ +N L P R
Sbjct: 155 RLAQTLDHLV-----------------------------------ENALRQTPPGGRVTL 179
Query: 612 WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671
S+ L + + V DTG+G+P Q+ IF F + R
Sbjct: 180 -----------------SARRALGEVRLDVSDTGRGVPFHVQAHIFDRF------VGRDR 216
Query: 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GG G+GL++ K LV G + S P GSTFT
Sbjct: 217 GGPGLGLALVKALVELHGGWVALESEPGNGSTFT 250
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 56/276 (20%)
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDV-TQQDYVRTAQASGKALVSLIN 490
D K++F+A +SHE+RTP+ + + + ++ ELD+ T ++++ L +L+N
Sbjct: 17 DRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76
Query: 491 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 550
E+LD +++E L++ +L +++ ++ + V + + P DP
Sbjct: 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDP 136
Query: 551 GRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
R RQ++ NL+ N +K+++K +V V L E
Sbjct: 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--------------------------- 169
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+DG +++ VED G GIP A+ RIF F +V S++
Sbjct: 170 -----------KDGG-------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT 205
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
GTG+GL+I+K +V G I S GS F
Sbjct: 206 YEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRF 241
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 56/276 (20%)
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDV-TQQDYVRTAQASGKALVSLIN 490
D K++F+A +SHE+RTP+ + + + ++ ELD+ T ++++ L +L+N
Sbjct: 17 DRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76
Query: 491 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 550
E+LD +++E L++ +L +++ ++ + V + + P DP
Sbjct: 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDP 136
Query: 551 GRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
R RQ++ NL+ N +K+++K +V V L E
Sbjct: 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--------------------------- 169
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+DG +++ VED G GIP A+ RIF F +V S++
Sbjct: 170 -----------KDGG-------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT 205
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
GTG+GL+I+K +V G I S GS F
Sbjct: 206 YEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRF 241
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 26/142 (18%)
Query: 888 KILIVDDNNVNLKVAA-----AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
KIL+V+DN+VN +V G++ A E K EL ++ FMD+QMP
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 62
Query: 943 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 1002
++DG +TK+IR + PI+A+TA + +ECL S
Sbjct: 63 KVDGLLSTKMIRR---------------------DLGYTSPIVALTAFADDSNIKECLES 101
Query: 1003 GMDGYVSKPFEAEQLYREVSRF 1024
GM+G++SKP + +L ++ F
Sbjct: 102 GMNGFLSKPIKRPKLKTILTEF 123
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 26/142 (18%)
Query: 888 KILIVDDNNVNLKVAA-----AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
KIL+V+DN+VN +V G++ A E K EL ++ FMD+QMP
Sbjct: 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 63
Query: 943 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 1002
++DG +TK+IR + PI+A+TA + +ECL S
Sbjct: 64 KVDGLLSTKMIRR---------------------DLGYTSPIVALTAFADDSNIKECLES 102
Query: 1003 GMDGYVSKPFEAEQLYREVSRF 1024
GM+G++SKP + +L ++ F
Sbjct: 103 GMNGFLSKPIKRPKLKTILTEF 124
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver Domain
Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 948
+LI +DN++ VAA L++ + V G +A + QFD MDIQMP MDG E
Sbjct: 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPVMDGLE 71
Query: 949 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG--MDG 1006
A IR E N + I+A+TAD I R G +D
Sbjct: 72 AVSEIRNYERTHNTK-----------------RASIIAITADTIDDD-----RPGAELDE 109
Query: 1007 YVSKPFEAEQL 1017
YVSKP QL
Sbjct: 110 YVSKPLNPNQL 120
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 696
L +SV+D G GIP + ++F F +V + +R GGTG+GL+I+K +V G+I S
Sbjct: 78 LYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADS 137
Query: 697 IPNIGSTFTFT 707
I G+T TFT
Sbjct: 138 IEGKGTTITFT 148
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 948
IL+VDD+ +N ++ A L G G A +L H D D+ MP MDG+
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 190
Query: 949 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008
T+ IR++ +P++ +TA+ + + CL SGMD +
Sbjct: 191 LTQRIRQL----------------------GLTLPVIGVTANALAEEKQRCLESGMDSCL 228
Query: 1009 SKPFEAEQLYREVSRF 1024
SKP + + + ++ +
Sbjct: 229 SKPVTLDVIKQTLTLY 244
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 948
IL+VDD+ +N ++ A L G G A +L H D D+ MP MDG+
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 69
Query: 949 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008
T+ IR++ +P++ +TA+ + + CL SGMD +
Sbjct: 70 LTQRIRQL----------------------GLTLPVIGVTANALAEEKQRCLESGMDSCL 107
Query: 1009 SKP 1011
SKP
Sbjct: 108 SKP 110
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure
At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+K+LIV+DN +N+K+ L+ G + G A + ++ D MDIQ+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-NKPDLILMDIQLPEISG 60
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
E TK ++E + H+P++A+TA ++ E G +
Sbjct: 61 LEVTKWLKE--------------------DDDLAHIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 1007 YVSKPFEAEQLYREVSRFFPPIP 1029
Y+SKP + R P
Sbjct: 101 YISKPISVVHFLETIKRLLERQP 123
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 67/250 (26%)
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELD--VTQQDYVRTAQASGKALVSLINEVLDQA 496
+ A V+HEIR P+ ++G M M LD T + Y+ L +++ E+L+ +
Sbjct: 134 EMTARVAHEIRNPIT-IIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYS 192
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K + LE FNL ++ +V LF K + ++ + +D + D R +Q+
Sbjct: 193 K---ERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQV 248
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+ N+I+ T
Sbjct: 249 LINLVQNAIEAT------------------------------------------------ 260
Query: 617 TFNQDGSTSPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
G K +S D+ + VSV ++G IP E + +IF+PF ++T GTG
Sbjct: 261 -----GENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT-----TKTQ-GTG 309
Query: 676 IGLSISKYLV 685
+GLSI + ++
Sbjct: 310 LGLSICRKII 319
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
Length = 143
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P + R + ++L+ DD+ N V L++ G V+CV ++ + M +DA
Sbjct: 4 PFLRHRARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDA-MAEEDYDAV 62
Query: 936 FMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 995
+D+ MP M+G + K +R M+ + + P++ ++ADV
Sbjct: 63 IVDLHMPGMNGLDMLKQLRVMQAS------------------GMRYTPVVVLSADVTPEA 104
Query: 996 YEECLRSGMDGYVSKPFEAEQL 1017
C ++G +++KP A +L
Sbjct: 105 IRACEQAGARAFLAKPVVAAKL 126
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A Novel
Cis- Autophosphorylation Mechanism
Length = 122
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF--DACFMDIQMP 942
+ +K+L+VDD+ V K+ + LK+ G V+ E G+ A E L +F D +DI MP
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---SEFTPDLIVLDIMMP 57
Query: 943 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 1002
MDGF K ++E E +R +P++ +TA + L
Sbjct: 58 VMDGFTVLKKLQEKEE-----WKR---------------IPVIVLTAKGGEEDESLALSL 97
Query: 1003 GMDGYVSKPFEAEQLYREVSRFF 1025
G + KPF Q EV
Sbjct: 98 GARKVMRKPFSPSQFIEEVKHLL 120
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 24/137 (17%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+ +KIL+VDD + L++ G V C G +A E++ Q D +DI +P
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-EELQPDLILLDIMLPNK 59
Query: 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 1004
DG E + +R+ + +PI+ +TA + L G
Sbjct: 60 DGVEVCREVRK-----------------------KYDMPIIMLTAKDSEIDKVIGLEIGA 96
Query: 1005 DGYVSKPFEAEQLYREV 1021
D YV+KPF +L V
Sbjct: 97 DDYVTKPFSTRELLARV 113
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 24/137 (17%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+ +KIL+VDD + L++ G V C G +A E++ Q D +DI +P
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-EELQPDLILLDIMLPNK 59
Query: 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 1004
DG E + +R+ + +PI+ +TA + L G
Sbjct: 60 DGVEVCREVRK-----------------------KYDMPIIMLTAKDSEIDKVIGLEIGA 96
Query: 1005 DGYVSKPFEAEQLYREV 1021
D YV+KPF +L V
Sbjct: 97 DDYVTKPFSTRELLARV 113
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In Complex
With Bef3 And The Effect Of Ph On Bef3 Binding, Possible
Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+KILIVDD + + + G VV G++A E Q D +D+ +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-EAEQPDIIILDLMLPEIDG 60
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
E K IR+ VPIL ++A + L G D
Sbjct: 61 LEVAKTIRKTS-----------------------SVPILMLSAKDSEFDKVIGLELGADD 97
Query: 1007 YVSKPFEAEQLYREV 1021
YV+KPF +L V
Sbjct: 98 YVTKPFSNRELQARV 112
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 639 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698
+ VED G GIP Q +F P +S GGTG+GLSI++ L+ + G+I F S P
Sbjct: 94 IDVEDNGPGIPPHLQDTLFYPM------VSGREGGTGLGLSIARNLIDQHSGKIEFTSWP 147
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF--DACFMDIQMP 942
+ +K+L+VDD+ V K+ + LK+ G V+ E G+ A E L +F D + I MP
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---SEFTPDLIVLXIMMP 57
Query: 943 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 1002
MDGF K ++E E +R +P++ +TA + L
Sbjct: 58 VMDGFTVLKKLQEKEE-----WKR---------------IPVIVLTAKGGEEDESLALSL 97
Query: 1003 GMDGYVSKPFEAEQLYREVSRFF 1025
G + KPF Q EV
Sbjct: 98 GARKVMRKPFSPSQFIEEVKHLL 120
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
G K+L++D+N V+ V L G V V ++ ++ H+ FMD+ MP ++
Sbjct: 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV--SHEHKVVFMDVCMPGVE 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL-AMTADVIQATYEECLRSGM 1004
++ +R E R +R P+L A++ + ++T E+C+ G+
Sbjct: 65 NYQIA--LRIHEKFTKQRHQR----------------PLLVALSGNTDKSTKEKCMSFGL 106
Query: 1005 DGYVSKPFEAEQLYREVSRFFPP 1027
DG + KP + + +S P
Sbjct: 107 DGVLLKPVSLDNIRDVLSDLLEP 129
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 787
S F G+K LV+D + V++ + LG +V VS +CL ++ K++ M
Sbjct: 3 SNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFM 56
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+KILIVDD + + + G VV G++A E Q D + + +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-EAEQPDIIILXLMLPEIDG 60
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
E K IR+ VPIL ++A + L G D
Sbjct: 61 LEVAKTIRKTS-----------------------SVPILMLSAKDSEFDKVIGLELGADD 97
Query: 1007 YVSKPFEAEQLYREV 1021
YV+KPF +L V
Sbjct: 98 YVTKPFSNRELQARV 112
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter Pylori
Length = 129
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+L+VDD++ ++ L R G V+ E G +A E L D MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
+ K +R ++R + +PI+ +TA+ +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFKE---------------IPIIMITAEGGKAEVITALKAGVNN 106
Query: 1007 YVSKPFEAEQL 1017
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus
Subtilis
Length = 136
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+ +KIL+VDD + + L+R G V+ G++A + + D +D+ +P++
Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKK-AETEKPDLIVLDVMLPKL 60
Query: 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 1004
DG E K +R+ + F PIL +TA + L G
Sbjct: 61 DGIEVCKQLRQQKLMF----------------------PILMLTAKDEEFDKVLGLELGA 98
Query: 1005 DGYVSKPFEAEQLYREVSRFFPPIPDRSP 1033
D Y++KPF ++ V R+P
Sbjct: 99 DDYMTKPFSPREVNARVKAILRRSEIRAP 127
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL-LMPPHQFDACFMDIQMPEMDG 946
KILIVDD + ++ L+ G E T L ++ FD D MP M G
Sbjct: 14 KILIVDDFSTMRRIVKNLLRDLGFNNT-QEADDGLTALPMLKKGDFDFVVTDWNMPGMQG 72
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
+ K IR E E+ H+P+L +TA+ + E ++G++G
Sbjct: 73 IDLLKNIRADE----------ELK----------HLPVLMITAEAKREQIIEAAQAGVNG 112
Query: 1007 YVSKPFEAEQLYREVSRFF 1025
Y+ KPF A L ++ + F
Sbjct: 113 YIVKPFTAATLKEKLDKIF 131
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLD 494
A + A++SHEIR P+ G + ++ + L ++ Y R A ++I + L
Sbjct: 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLT 72
Query: 495 QAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFR 554
AK E V + ++D + L + D LA P ++IG+ +FR
Sbjct: 73 FAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLA-------PFSVIGEREKFR 125
Query: 555 QIITNLMGNSIKFTEKG---HIFVTV 577
Q + N+M N+I+ G ++V++
Sbjct: 126 QCLLNVMKNAIEAMPNGGTLQVYVSI 151
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDDN+ ++ LK G VE + + L + + D MP MD
Sbjct: 3 KFLVVDDNSTMRRITRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 60
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 61 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 100
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 101 GYVVKPFTAATLEEKLNKIF 120
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of Heli
Pylori
Length = 129
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+L+VDD++ ++ L R G V+ E G +A E L D MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
+ K +R ++R + +PI+ +T + +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFKE---------------IPIIMITTEGGKAEVITALKAGVNN 106
Query: 1007 YVSKPFEAEQL 1017
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDDN+ ++ LK G VE + + L + + D MP MD
Sbjct: 3 KFLVVDDNSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 60
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L TA+ + ++G
Sbjct: 61 GLELLKTIRA----------DGAMSA----------LPVLMTTAEAKKENIIAAAQAGAS 100
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 101 GYVVKPFTAATLEEKLNKIF 120
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
Query: 885 LGRKILIVDDN---NVNLK--VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
+G+++LIVDD + LK + AG + G A E +K EL + D MDI
Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----KPDIVTMDI 55
Query: 940 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 999
MPEM+G +A K I +++ N I+ +A QA E
Sbjct: 56 TMPEMNGIDAIKEIMKIDPN----------------------AKIIVCSAMGQQAMVIEA 93
Query: 1000 LRSGMDGYVSKPFEAEQLYREVSR 1023
+++G ++ KPF+ ++ +++
Sbjct: 94 IKAGAKDFIVKPFQPSRVVEALNK 117
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced
By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By
Gly
Length = 129
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDGGTGRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response Regulator
Of Bacterial Chemotaxis
Length = 128
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGFGFIICDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 32/143 (22%)
Query: 886 GRKILIVDDN---NVNLK--VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
G+++LIVDD + LK + AG + G A E +K EL + D MDI
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----KPDIVTMDIT 55
Query: 941 MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL 1000
MPEM+G +A K I +++ N I+ +A QA E +
Sbjct: 56 MPEMNGIDAIKEIMKIDPN----------------------AKIIVCSAMGQQAMVIEAI 93
Query: 1001 RSGMDGYVSKPFEAEQLYREVSR 1023
++G ++ KPF+ ++ +++
Sbjct: 94 KAGAKDFIVKPFQPSRVVEALNK 116
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + F D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR + ++ A +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIR------------ADSAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
Length = 130
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 8 KFLVVDDFSTGRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 65
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 66 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 105
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 106 GYVVKPFTAATLEEKLNKIF 125
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWRMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAHAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DACFMDIQMPEMDG 946
+IL+VDD N+++ A L V G T L M D +D+ MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGP--TALAMAARDLPDIILLDVMMPGMDG 60
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
F + R+++ + R H+P++ +TA + + L SG
Sbjct: 61 F---TVCRKLKDDPTTR-----------------HIPVVLITALDGRGDRIQGLESGASD 100
Query: 1007 YVSKPFEAEQLY---REVSRF 1024
+++KP + L+ R ++RF
Sbjct: 101 FLTKPIDDVMLFARVRSLTRF 121
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWRMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 27/140 (19%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQM 941
L+G++ILIV+D V + + GA V G A ELL P D DI M
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP---DLMICDIAM 61
Query: 942 PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR 1001
P M+G ++ +EH N RG+ P+L ++A A + LR
Sbjct: 62 PRMNG------LKLLEHIRN----RGD------------QTPVLVISATENMADIAKALR 99
Query: 1002 SGMDGYVSKPFEAEQLYREV 1021
G++ + KP + RE+
Sbjct: 100 LGVEDVLLKPVKDLNRLREM 119
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter Pylori
Length = 129
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+L+VDD++ ++ L R G V+ E G +A E L MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWNMPEMNG 66
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
+ K +R ++R + +PI+ +T + +A L++G++
Sbjct: 67 LDLVKKVRS-----DSRFKE---------------IPIIMITTEGGKAEVITALKAGVNN 106
Query: 1007 YVSKPFEAEQL 1017
Y+ KPF + L
Sbjct: 107 YIVKPFTPQVL 117
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
Length = 129
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEADAENIKALAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENVIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
Length = 459
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DACFMDIQMPEMDG 946
+IL+VDD N+++ A L V G T L M D +D+ MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGP--TALAMAARDLPDIILLDVMMPGMDG 61
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
F + R+++ + R H+P++ +TA + + L SG
Sbjct: 62 F---TVCRKLKDDPTTR-----------------HIPVVLITALDGRGDRIQGLESGASD 101
Query: 1007 YVSKPFEAEQLY---REVSRF 1024
+++KP + L+ R ++RF
Sbjct: 102 FLTKPIDDVMLFARVRSLTRF 122
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And Dynamics
Of Chemotaxis Y Protein Using Three-And Four-Dimensional
Heteronuclear (13c,15n) Nmr Spectroscopy
Length = 128
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D +MP MD
Sbjct: 6 KFLVVDDQSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWKMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAYAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein In
Aqueous Solution By Nuclear Magnetic Resonance Methods
Length = 129
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli Phop
Length = 121
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 947
++L+V+DN + ++ G V E K+A + + H D +D+ +P+ DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60
Query: 948 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 1007
+IR R R +VS+ PIL +TA E L +G D Y
Sbjct: 61 S---LIR--------RWRSNDVSL-----------PILVLTARESWQDKVEVLSAGADDY 98
Query: 1008 VSKPFEAEQL 1017
V+KPF E++
Sbjct: 99 VTKPFHIEEV 108
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
Length = 128
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR ++ A +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIR------------AXXAMSA--------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWMMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89q
Length = 132
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAQAKKENIIAAAQAGAS 107
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89k
Length = 132
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAKAKKENIIAAAQAGAS 107
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWMMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTALAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +T++ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTSEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTARAKKENIIAAAQAGAS 107
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 947
KI +VDD+ LK + L++ G V+ + L F +D+ +P+ G+
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGR----VKTFLTGEDFLNDEEAFHVVVLDVXLPDYSGY 59
Query: 948 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 1007
E + I+E R E V +L + +D + + +G D Y
Sbjct: 60 EICRXIKET---------RPET-----------WVILLTLLSD--DESVLKGFEAGADDY 97
Query: 1008 VSKPFEAEQLYREVSRFF 1025
V+KPF E L V RF
Sbjct: 98 VTKPFNPEILLARVKRFL 115
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 947
KI +VDD+ LK + L++ G V+ + L F +D+ +P+ G+
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGR----VKTFLTGEDFLNDEEAFHVVVLDVXLPDYSGY 59
Query: 948 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 1007
E + I+E R E V +L + +D + + +G D Y
Sbjct: 60 EICRXIKET---------RPET-----------WVILLTLLSD--DESVLKGFEAGADDY 97
Query: 1008 VSKPFEAEQLYREVSRFF 1025
V+KPF E L V RF
Sbjct: 98 VTKPFNPEILLARVKRFL 115
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTTEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTVEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59 And
89: N59d E89y
Length = 132
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMD 67
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA + ++G
Sbjct: 68 GLELLKTIRA----------DGAMSA----------LPVLMVTAYAKKENIIAAAQAGAS 107
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 938 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 997
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 56 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 95
Query: 998 ECLRSGMDGYVSKPFEAEQLYREVSRFF 1025
++G GYV KPF A L ++++ F
Sbjct: 96 AAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF L ++++ F
Sbjct: 104 GYVVKPFTPATLEEKLNKIF 123
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF L ++++ F
Sbjct: 105 GYVVKPFTPATLEEKLNKIF 124
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +T + + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTMEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 938 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 997
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 56 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 95
Query: 998 ECLRSGMDGYVSKPFEAEQLYREVSRFF 1025
++G GYV KPF A L ++++ F
Sbjct: 96 AAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of Chey
Length = 127
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 938 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 997
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 55 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 94
Query: 998 ECLRSGMDGYVSKPFEAEQLYREVSRFF 1025
++G GYV KPF A L ++++ F
Sbjct: 95 AAAQAGASGYVVKPFTAATLEEKLNKIF 122
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of Chey
Length = 130
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 938 DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 997
D MP MDG E K IR G +S +P+L +TA+ +
Sbjct: 58 DWNMPNMDGLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENII 97
Query: 998 ECLRSGMDGYVSKPFEAEQLYREVSRFF 1025
++G GYV KPF A L ++++ F
Sbjct: 98 AAAQAGASGYVVKPFTAATLEEKLNKIF 125
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++L+V+D + LK+ V VC + + L P FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEP--FDVVILDIXLPVHDG 61
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
+E K RE S + P+L +TA + L G D
Sbjct: 62 WEILKSXRE----------------------SGVNTPVLXLTALSDVEYRVKGLNXGADD 99
Query: 1007 YVSKPFEAEQLYREV 1021
Y+ KPF+ +L V
Sbjct: 100 YLPKPFDLRELIARV 114
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 25/135 (18%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++L+V+D + LK+ V VC + + L P FD +DI +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDG 61
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
+E K +RE S + P+L +TA + L G D
Sbjct: 62 WEILKSMRE----------------------SGVNTPVLMLTALSDVEYRVKGLNMGADD 99
Query: 1007 YVSKPFEAEQLYREV 1021
Y+ KPF+ +L V
Sbjct: 100 YLPKPFDLRELIARV 114
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 64
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 65 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT-----GIGLSISKYLVGRMKG 690
+L + + D G G+PL R+F+ P+ GGT G GL IS+ +G
Sbjct: 283 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 342
Query: 691 EIGFVSIPNIGS 702
++ S+ G+
Sbjct: 343 DLQLFSMEGFGT 354
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of Chey
Length = 128
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISAWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT-----GIGLSISKYLVGRMKG 690
+L + + D G G+PL R+F+ P+ GGT G GL IS+ +G
Sbjct: 270 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 329
Query: 691 EIGFVSIPNIGS 702
++ S+ G+
Sbjct: 330 DLQLFSMEGFGT 341
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 61/182 (33%)
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
+E FNL ++ +V LF K + ++ + +D + D R +Q++ NL+ N+
Sbjct: 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQVLINLVQNA 59
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624
I+ T G
Sbjct: 60 IEAT-----------------------------------------------------GEN 66
Query: 625 SPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683
K +S D+ + VSV ++G IP E + +IF+PF ++T GTG+GLSI +
Sbjct: 67 GKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT-----TKTQ-GTGLGLSICRK 120
Query: 684 LV 685
++
Sbjct: 121 II 122
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + D MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 36.6 bits (83), Expect = 0.080, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 878 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937
MSL+ +KILIV+D+ K A L +YG V G+ A E + D M
Sbjct: 1 MSLKD----KKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILM 56
Query: 938 DIQMPE-MDGFEATKIIREM 956
DI++ E MDG + I+++
Sbjct: 57 DIELGEGMDGVQTALAIQQI 76
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPE 943
++IL+VDD+ ++ L+ G + G +A L P D +D+ +P
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP----DLVLLDLMLPG 61
Query: 944 MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSG 1003
M+G + +++R ++ VPI+ +TA L SG
Sbjct: 62 MNGIDVCRVLR-----------------------ADSGVPIVMLTAKTDTVDVVLGLESG 98
Query: 1004 MDGYVSKPFEAEQ 1016
D Y+ KPF+ ++
Sbjct: 99 ADDYIMKPFKPKE 111
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIF------TPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
+L + + D G G+PL R+F P + P+ + G G GL IS+ +
Sbjct: 293 DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQ 352
Query: 690 GEIGFVSIPNIGS 702
G++ S+ +G+
Sbjct: 353 GDLKLYSMEGVGT 365
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 36.2 bits (82), Expect = 0.093, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 878 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937
MSL+ ++IL+VDD+ LKR V G A L F+ M
Sbjct: 1 MSLKQ---SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL---STFEPAIM 54
Query: 938 --DIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 995
D+ MP++DG + +IR + N V+N P + + + + +A
Sbjct: 55 TLDLSMPKLDGLD---VIRSLRQN----------------KVAN--QPKILVVSGLDKAK 93
Query: 996 YEECLRSGMDGYVSKPFEAEQL 1017
++ + G D Y+ KPF+ + L
Sbjct: 94 LQQAVTEGADDYLEKPFDNDAL 115
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 948
+LI+DD+ V + AA L+ V+ G + ++ Q D D++ P++DG E
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQI-FESEQPDLVICDLRXPQIDGLE 66
Query: 949 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008
+ IR+ + PI+ ++ + + E LR G Y+
Sbjct: 67 LIRRIRQ----------------------TASETPIIVLSGAGVMSDAVEALRLGAADYL 104
Query: 1009 SKPFE 1013
KP E
Sbjct: 105 IKPLE 109
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 948
+LI+DD+ V + AA L+ V+ G + ++ Q D D++ P++DG E
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQI-FESEQPDLVICDLRXPQIDGLE 66
Query: 949 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008
+ IR+ + PI+ ++ + + E LR G Y+
Sbjct: 67 LIRRIRQ----------------------TASETPIIVLSGAGVXSDAVEALRLGAADYL 104
Query: 1009 SKPFE 1013
KP E
Sbjct: 105 IKPLE 109
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 690
VED G GI E + +F PF++ G S +RT GTG+GL+I + +V G
Sbjct: 82 VEDDGPGIAPEQRKHLFQPFVR-GDS-ARTISGTGLGLAIVQRIVDNHNG 129
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 948
+L+++D+ V + L G V ERGK+A +LL H F+ + + +P+++G E
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH-FNVVLLXLLLPDVNGLE 61
Query: 949 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008
K I+E R E + + AM + C+ ++ +
Sbjct: 62 ILKWIKE---------RSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTI 112
Query: 1009 SKPFEAEQLYRE 1020
+K E +L +E
Sbjct: 113 NKAIEHRKLRKE 124
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
GYV KPF A L ++++ F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 29/143 (20%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEMD 945
R++LI +D + A L+ G +V G++A EL H+ D MD++MP D
Sbjct: 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVEL-AELHKPDLVIMDVKMPRRD 72
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G +A A E S PI+ +TA + E +G
Sbjct: 73 GIDA-----------------------ASEIASKRIAPIVVLTAFSQRDLVERARDAGAM 109
Query: 1006 GYVSKPFEAEQLYR----EVSRF 1024
Y+ KPF L VSRF
Sbjct: 110 AYLVKPFSISDLIPAIELAVSRF 132
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
Length = 124
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 41/152 (26%)
Query: 884 LLGRKILIVDDNN-----VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
++ KILIVDD + +N G + + AA G +A +++ D +D
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAA-----NGLQALDIVTKERP-DLVLLD 54
Query: 939 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQA 994
+++P MDG E K ++ ++ N + ++ MTA D+IQ
Sbjct: 55 MKIPGMDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQE 92
Query: 995 TYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026
+ E G + +KPF+ +++ V ++ P
Sbjct: 93 SKE----LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 884 LLGRKILIVDDNN-----VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
++ KILIVDD +N G + + AA G +A +++ D +D
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAA-----NGLQALDIVTKERP-DLVLLD 54
Query: 939 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQA 994
+++P MDG E K ++ ++ N + ++ MTA D+IQ
Sbjct: 55 MKIPGMDGIEIAKRMKVIDEN----------------------IRVIIMTAYGELDMIQE 92
Query: 995 TYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026
+ E G + +KPF+ +++ V ++ P
Sbjct: 93 SKE----LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 884 LLGRKILIVDDNN-----VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
++ KILIVDD +N G + + AA G +A +++ D +D
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAA-----NGLQALDIVTKERP-DLVLLD 54
Query: 939 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQA 994
+++P MDG E K ++ ++ N + ++ MTA D+IQ
Sbjct: 55 MKIPGMDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQE 92
Query: 995 TYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026
+ E G + +KPF+ +++ V ++ P
Sbjct: 93 SKE----LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 884 LLGRKILIVDDNN-----VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
++ KILIVDD +N G + + AA G +A +++ D +D
Sbjct: 3 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAA-----NGLQALDIVTKERP-DLVLLD 56
Query: 939 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQA 994
+++P MDG E K ++ ++ N + ++ MTA D+IQ
Sbjct: 57 MKIPGMDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQE 94
Query: 995 TYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026
+ E G + +KPF+ +++ V ++ P
Sbjct: 95 SKE----LGALTHFAKPFDIDEIRDAVKKYLP 122
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLSISKYLVGRMK 689
+L + + D G G+PL R+F+ P S + G G GL IS+ +
Sbjct: 269 DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328
Query: 690 GEIGFVSIPNIGS 702
G++ S+ G+
Sbjct: 329 GDLNLYSLSGYGT 341
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 26/141 (18%)
Query: 889 ILIVDDNNVNLKVAAAGLKRY-GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 947
+L+++D VA LK+ +++ GK+A +L D D+QM MDG
Sbjct: 6 VLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGL 65
Query: 948 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI--QATYE--ECLRSG 1003
+R +S H IL+ D I QAT ECL
Sbjct: 66 AF--------------LRHASLS-------GKVHSVILSSEVDPILRQATISMIECLGLN 104
Query: 1004 MDGYVSKPFEAEQLYREVSRF 1024
G + KPF E++ ++R+
Sbjct: 105 FLGDLGKPFSLERITALLTRY 125
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 41/148 (27%)
Query: 888 KILIVDDNN-----VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
KILIVDD + +N G + + AA G +A +++ D +D+++P
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAA-----NGLQALDIVTKERP-DLVLLDMKIP 56
Query: 943 EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQATYEE 998
MDG E K ++ ++ N + ++ MTA D+IQ + E
Sbjct: 57 GMDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQESKE- 93
Query: 999 CLRSGMDGYVSKPFEAEQLYREVSRFFP 1026
G + +KPF+ +++ V ++ P
Sbjct: 94 ---LGALTHFAKPFDIDEIRDAVKKYLP 118
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGP------SISRTHGGTGIGLSISKYLVGRMK 689
+L + + D G G+PL R+F+ P S + G G GL IS+ +
Sbjct: 269 DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328
Query: 690 GEIGFVSIPNIGS 702
G++ S+ G+
Sbjct: 329 GDLNLYSLSGYGT 341
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEI 692
+L + VED G GIPL + IF G + G G+GL++++ + + +G+I
Sbjct: 74 HLYIVVEDDGPGIPLSKREVIF----DRGQRVDTLRPGQGVGLAVAREITEQYEGKI 126
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus Marisnigri
Jr1
Length = 138
Score = 33.9 bits (76), Expect = 0.53, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
IL+VDD+ + V L+R G + G++ E L PP D +DI DG
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP---DLVLLDIXXEPXDG 62
Query: 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG 1006
+E + I+ + + +P+L +TA + S ++
Sbjct: 63 WETLERIKT--------------------DPATRDIPVLXLTAKPLTPEEANEYGSYIED 102
Query: 1007 YVSKPFEAEQLYREV 1021
Y+ KP QLY +
Sbjct: 103 YILKPTTHHQLYEAI 117
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 33.9 bits (76), Expect = 0.53, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 25/131 (19%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 947
++L+VDD +++ + LK G V G +A + DA +D+ P DGF
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP-DAVILDVXXPGXDGF 83
Query: 948 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA-DVIQATYEECLRSGMDG 1006
+ +R P L +TA D +Q L G D
Sbjct: 84 GVLRRLR----------------------ADGIDAPALFLTARDSLQDKIAG-LTLGGDD 120
Query: 1007 YVSKPFEAEQL 1017
YV+KPF E++
Sbjct: 121 YVTKPFSLEEV 131
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VDD + ++ LK G VE + + L + + MP MD
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G +S +P+L + A+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAMSA----------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC----VERGKKATELLMPPHQFDACFMDI 939
L +++L+V+DN ++ + L R + C V+ G KA + ++D +DI
Sbjct: 3 LRSKRVLVVEDNPDDIALIRRVLDR--KDIHCQLEFVDNGAKALYQVQQA-KYDLIILDI 59
Query: 940 QMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC 999
+P +GFE +R+ +N H PI+ +T +V ++C
Sbjct: 60 GLPIANGFEVXSAVRKPG--------------------ANQHTPIVILTDNVSDDRAKQC 99
Query: 1000 LRSGMDGYVSK 1010
+G V K
Sbjct: 100 XAAGASSVVDK 110
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIF------TPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
+L V + D G G+PL R+F P +V S + G G GL IS+ +
Sbjct: 282 DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQ 341
Query: 690 GEIGFVSIPNIGS 702
G++ S+ G+
Sbjct: 342 GDLKLYSLEGYGT 354
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 32.7 bits (73), Expect = 0.95, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA---CFMDIQMPEM 944
++L+VDD+ + A L++ ++ V A E L Q A +D PE+
Sbjct: 126 EVLVVDDSRTSRHRTXAQLRK---QLLQVHEASHAREALATLEQHPAIRLVLVDYYXPEI 182
Query: 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 1004
DG + +R E S + I+ ++ + L+ G
Sbjct: 183 DGISLVRXLR--------------------ERYSKQQLAIIGISVSDKRGLSARYLKQGA 222
Query: 1005 DGYVSKPFEAEQLYREVS 1022
+ ++++PFE E+L VS
Sbjct: 223 NDFLNQPFEPEELQCRVS 240
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 884 LLGRKILIVDDNN-----VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
++ KILIVDD + +N G + + AA G +A +++ D +
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAA-----NGLQALDIVTKERP-DLVLLX 54
Query: 939 IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTA----DVIQA 994
+++P MDG E K ++ ++ N + ++ MTA D+IQ
Sbjct: 55 MKIPGMDGIEILKRMKVIDEN----------------------IRVIIMTAYGELDMIQE 92
Query: 995 TYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026
+ E G + +KPF+ +++ V ++ P
Sbjct: 93 SKE----LGALTHFAKPFDIDEIRDAVKKYLP 120
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 888 KILIVDDNNVNLKV------AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
++L+VDD+ V + +K G A +E +KA EL + D MDI+M
Sbjct: 27 RVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-----KPDVITMDIEM 81
Query: 942 PEMDGFEATKII 953
P ++G EA K+I
Sbjct: 82 PNLNGIEALKLI 93
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 27/112 (24%)
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 969
AV E + ATE ++ DA +DI MP +DG +R M+++
Sbjct: 35 ATAVDGAEALRSATE-----NRPDAIVLDINMPVLDGVSVVTALRAMDND---------- 79
Query: 970 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREV 1021
VP+ ++A L +G D Y+ KPF +L V
Sbjct: 80 ------------VPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARV 119
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 22/75 (29%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+G+++LIVDD A G + VE+ K+ L P D MDI MPEM
Sbjct: 1 MGKRVLIVDD-------ATNGRE-------AVEKYKE----LKP----DIVTMDITMPEM 38
Query: 945 DGFEATKIIREMEHN 959
+G +A K I +++ N
Sbjct: 39 NGIDAIKEIMKIDPN 53
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF 947
+ILIV+D+ + L+ G V G++A L D D+ MPEMDG+
Sbjct: 9 EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP-DLIISDVLMPEMDGY 67
Query: 948 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 1007
+ + +G+ + + + IL+ DV+++ L G D +
Sbjct: 68 ALCRWL------------KGQPDL---RTIPVILLTILSDPRDVVRS-----LECGADDF 107
Query: 1008 VSKPFEAEQLYREVSRFF 1025
++KP + L V R
Sbjct: 108 ITKPCKDVVLASHVKRLL 125
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator From
Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator From
Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator From
Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator From
Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator From
Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator From
Clostridium Difficile
Length = 136
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
L KILI+D + N + L+ G ++ ++A + +++D F++I + +
Sbjct: 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-NKYDLIFLEIILSDG 61
Query: 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 1004
DG+ K IR NV+ PI+ T + L SG
Sbjct: 62 DGWTLCKKIR---------------------NVTT--CPIVYXTYINEDQSILNALNSGG 98
Query: 1005 DGYVSKPFEAEQLYREV 1021
D Y+ KP E LY +V
Sbjct: 99 DDYLIKPLNLEILYAKV 115
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
K L+VD + ++ LK G VE + + L + + D P D
Sbjct: 6 KFLVVDKFSTXRRIVRNLLKELG--FNNVEEAEDGVDALNKLQAGGYGFVISDWNXPNXD 63
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G E K IR G S +P+L +TA+ + ++G
Sbjct: 64 GLELLKTIRA----------DGAXSA----------LPVLXVTAEAKKENIIAAAQAGAS 103
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
G+V KPF A L ++++ F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 935 CFMDIQMPEMDGFEATKIIREMEHNFNNRIRR--GEVSIEAY 974
+ D+ M G +AT+++R +E N NNR + GE +IEA+
Sbjct: 99 VYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAW 140
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 170 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 224
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 225 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 268
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLA 131
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 170 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 224
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 225 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 268
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLA 131
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 170 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 224
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 225 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 268
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLA 131
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMD 945
K+LIVDD + + L++ G + G++ +++ PH D MP+MD
Sbjct: 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHL--VISDFNMPKMD 65
Query: 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005
G + +R N + + +TA +A ++ G +
Sbjct: 66 GLGLLQAVR--------------------ANPATKKAAFIILTAQGDRALVQKAAALGAN 105
Query: 1006 GYVSKPFEAEQLYREVSRFF 1025
++KPF E++ + F
Sbjct: 106 NVLAKPFTIEKMKAAIEAVF 125
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 62/205 (30%)
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+LD+++S + Q KGV +++ IS + + +G+ F +++ N++ N+ K+ + F
Sbjct: 14 LLDNLISALNKVYQRKGVNISMDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE---F 68
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
V + S++ T D H +
Sbjct: 69 VEI-----------------SARQT------DDHLHIF---------------------- 83
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
VED G GIP +S +F G G G+GL++++ + + G+I
Sbjct: 84 ------VEDDGPGIPHSKRSLVF----DRGQRADTLRPGQGVGLAVAREITEQYAGQI-- 131
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNE 719
++ ++ VFG T E
Sbjct: 132 IASDSLLGGARMEVVFGRQHPTQKE 156
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
Length = 121
Score = 30.0 bits (66), Expect = 7.7, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFE 948
+LIV+D + L+ G V E ++ L + D +D+ +P+ DG E
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGDGIE 62
Query: 949 ATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008
+ +R+ VP++ ++A ++ L +G D Y+
Sbjct: 63 FIRDLRQWSA-----------------------VPVIVLSARSEESDKIAALDAGADDYL 99
Query: 1009 SKPFEAEQL 1017
SKPF +L
Sbjct: 100 SKPFGIGEL 108
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL-LMPPHQFDACFMDIQMPEMDG 946
++++ DD+ + + L G+ V E A L L+ H D +D +MP MDG
Sbjct: 17 RVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDG 76
Query: 947 FEATKIIREME 957
+ +R E
Sbjct: 77 AQVAAAVRSYE 87
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+ R+IL+V+D ++ L++ G V E A L P D +D +P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLP-- 57
Query: 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 1004
G + I+ ++ R +P++ +TA + L +G
Sbjct: 58 -GGSGIQFIKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGA 99
Query: 1005 DGYVSKPFEAEQL 1017
D Y++KPF ++L
Sbjct: 100 DDYITKPFSPKEL 112
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+ R+IL+V+D ++ L++ G V E A L P D +D +P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLP-- 57
Query: 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGM 1004
G + I+ ++ R +P++ +TA + L +G
Sbjct: 58 -GGSGIQFIKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGA 99
Query: 1005 DGYVSKPFEAEQL 1017
D Y++KPF ++L
Sbjct: 100 DDYITKPFSPKEL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,922,943
Number of Sequences: 62578
Number of extensions: 1166913
Number of successful extensions: 2868
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 2666
Number of HSP's gapped (non-prelim): 158
length of query: 1033
length of database: 14,973,337
effective HSP length: 109
effective length of query: 924
effective length of database: 8,152,335
effective search space: 7532757540
effective search space used: 7532757540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)