Query 001674
Match_columns 1033
No_of_seqs 732 out of 4570
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11107 hybrid sensory histid 100.0 5.6E-60 1.2E-64 606.7 68.7 505 427-1027 283-787 (919)
2 PRK10841 hybrid sensory kinase 100.0 5.9E-58 1.3E-62 581.5 81.0 486 423-1027 433-919 (924)
3 KOG0519 Sensory transduction h 100.0 9.9E-61 2.2E-65 591.8 14.7 767 225-1026 4-785 (786)
4 PRK15347 two component system 100.0 1E-53 2.2E-58 549.1 77.4 427 423-1025 384-810 (921)
5 PRK11091 aerobic respiration c 100.0 2.2E-54 4.7E-59 545.6 48.7 371 427-1027 273-645 (779)
6 TIGR02956 TMAO_torS TMAO reduc 100.0 3.6E-54 7.7E-59 556.1 51.0 372 424-1026 451-822 (968)
7 PRK11466 hybrid sensory histid 100.0 1.9E-52 4E-57 537.0 51.3 371 421-1027 428-800 (914)
8 PRK09959 hybrid sensory histid 100.0 3.5E-48 7.6E-53 510.5 51.1 383 417-1026 692-1075(1197)
9 PRK10618 phosphotransfer inter 100.0 3.2E-45 6.9E-50 459.2 46.2 240 421-711 434-673 (894)
10 PRK13837 two-component VirA-li 100.0 5.4E-43 1.2E-47 443.5 51.2 363 436-1027 449-814 (828)
11 COG5002 VicK Signal transducti 100.0 7.2E-41 1.6E-45 357.0 17.6 227 433-713 221-451 (459)
12 PRK13557 histidine kinase; Pro 100.0 1E-36 2.2E-41 367.5 47.4 369 436-1029 162-537 (540)
13 PRK09303 adaptive-response sen 100.0 3.6E-36 7.9E-41 348.7 33.1 243 414-711 128-378 (380)
14 COG2205 KdpD Osmosensitive K+ 100.0 1.9E-36 4.1E-41 355.2 30.2 225 431-713 654-882 (890)
15 PRK11006 phoR phosphate regulo 100.0 5.5E-33 1.2E-37 327.4 29.2 221 435-711 202-424 (430)
16 PRK10604 sensor protein RstB; 100.0 8.8E-32 1.9E-36 317.5 35.6 229 422-712 197-425 (433)
17 PRK10815 sensor protein PhoQ; 100.0 1.1E-30 2.3E-35 312.0 37.1 222 429-711 258-479 (485)
18 TIGR02938 nifL_nitrog nitrogen 100.0 6.5E-31 1.4E-35 312.4 30.9 211 437-710 276-494 (494)
19 PRK10549 signal transduction h 100.0 3.9E-30 8.4E-35 305.5 35.8 236 421-712 224-460 (466)
20 PRK10490 sensor protein KdpD; 100.0 6E-30 1.3E-34 324.5 33.2 223 432-712 659-884 (895)
21 PRK10755 sensor protein BasS/P 100.0 3.2E-29 7E-34 287.7 34.8 227 422-711 122-351 (356)
22 PRK10364 sensor protein ZraS; 100.0 3.9E-29 8.4E-34 297.0 36.2 213 436-712 236-450 (457)
23 PRK09835 sensor kinase CusS; P 100.0 8.1E-29 1.7E-33 295.4 37.5 232 422-710 247-480 (482)
24 TIGR03785 marine_sort_HK prote 100.0 8.1E-29 1.8E-33 307.4 37.2 230 424-709 472-703 (703)
25 TIGR01386 cztS_silS_copS heavy 100.0 7.1E-29 1.5E-33 293.2 34.9 230 422-709 226-457 (457)
26 PRK09470 cpxA two-component se 100.0 2.2E-28 4.9E-33 289.7 37.2 232 422-712 228-459 (461)
27 COG4251 Bacteriophytochrome (l 100.0 1.7E-29 3.7E-34 287.9 25.5 236 420-714 507-745 (750)
28 COG4191 Signal transduction hi 100.0 3E-26 6.5E-31 262.9 51.8 211 438-710 385-601 (603)
29 COG3852 NtrB Signal transducti 100.0 4.2E-29 9E-34 264.5 25.1 222 435-712 130-356 (363)
30 PRK09467 envZ osmolarity senso 100.0 3.9E-28 8.3E-33 286.0 34.5 222 421-711 213-434 (435)
31 PRK10337 sensor protein QseC; 100.0 5.4E-28 1.2E-32 286.1 34.3 226 422-708 222-449 (449)
32 TIGR02966 phoR_proteo phosphat 100.0 2.7E-28 5.9E-33 274.7 27.9 218 436-708 113-333 (333)
33 PRK11100 sensory histidine kin 100.0 8.8E-27 1.9E-31 276.6 35.5 218 436-710 255-473 (475)
34 PRK11073 glnL nitrogen regulat 100.0 3.2E-27 6.9E-32 270.0 28.2 217 436-710 129-347 (348)
35 COG0642 BaeS Signal transducti 99.9 1E-25 2.2E-30 251.0 30.6 217 436-712 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 9E-26 2E-30 274.9 30.0 214 436-712 389-603 (607)
37 TIGR02916 PEP_his_kin putative 99.9 2.8E-24 6E-29 267.5 29.6 203 436-709 474-679 (679)
38 PF03924 CHASE: CHASE domain; 99.9 2.8E-25 6.2E-30 233.4 15.7 186 157-350 2-193 (193)
39 PRK13560 hypothetical protein; 99.9 1.7E-24 3.8E-29 273.9 25.2 209 424-711 592-804 (807)
40 PRK11086 sensory histidine kin 99.9 1.3E-22 2.9E-27 245.4 23.3 195 437-712 339-537 (542)
41 PRK11644 sensory histidine kin 99.9 1.7E-21 3.8E-26 233.1 31.1 195 434-710 299-494 (495)
42 COG5000 NtrY Signal transducti 99.9 6.3E-22 1.4E-26 226.1 21.9 211 436-710 485-708 (712)
43 PRK15053 dpiB sensor histidine 99.9 1.5E-21 3.3E-26 237.0 26.8 198 439-712 340-541 (545)
44 COG3614 Predicted periplasmic 99.9 3.5E-20 7.6E-25 198.2 23.9 228 84-319 10-247 (348)
45 COG4192 Signal transduction hi 99.8 2.1E-19 4.6E-24 198.3 25.7 210 438-710 452-666 (673)
46 COG0745 OmpR Response regulato 99.8 1.1E-19 2.3E-24 195.4 16.7 118 888-1028 2-119 (229)
47 PRK13559 hypothetical protein; 99.8 6.7E-19 1.4E-23 202.6 22.7 186 436-711 169-360 (361)
48 PF02518 HATPase_c: Histidine 99.8 2.5E-19 5.4E-24 170.8 13.0 109 548-710 1-110 (111)
49 PRK10935 nitrate/nitrite senso 99.8 5.6E-17 1.2E-21 197.8 26.9 193 439-711 362-560 (565)
50 COG3290 CitA Signal transducti 99.7 1.7E-16 3.8E-21 182.2 23.3 194 439-712 335-533 (537)
51 PRK09581 pleD response regulat 99.7 6.1E-16 1.3E-20 182.8 24.1 256 740-1023 4-270 (457)
52 PRK10600 nitrate/nitrite senso 99.7 2.5E-15 5.5E-20 183.8 30.1 182 448-711 373-557 (569)
53 COG2204 AtoC Response regulato 99.7 9.3E-17 2E-21 185.2 15.3 117 887-1026 5-121 (464)
54 PF00072 Response_reg: Respons 99.7 1.3E-16 2.8E-21 151.3 13.5 111 889-1022 1-112 (112)
55 COG3437 Response regulator con 99.7 1.2E-16 2.6E-21 175.2 12.1 119 886-1024 14-132 (360)
56 COG0784 CheY FOG: CheY-like re 99.7 7E-16 1.5E-20 150.2 15.6 119 886-1027 5-126 (130)
57 COG4753 Response regulator con 99.7 2.3E-16 4.9E-21 181.5 13.2 115 888-1025 3-120 (475)
58 COG3706 PleD Response regulato 99.6 7.6E-15 1.6E-19 168.3 19.3 123 885-1028 131-253 (435)
59 COG4566 TtrR Response regulato 99.6 3.2E-15 6.9E-20 150.1 13.5 117 887-1026 5-121 (202)
60 PRK10547 chemotaxis protein Ch 99.6 4.1E-14 8.8E-19 172.3 24.7 146 510-712 343-525 (670)
61 COG2197 CitB Response regulato 99.6 6.9E-15 1.5E-19 156.7 15.6 117 888-1027 2-120 (211)
62 COG4565 CitB Response regulato 99.6 4.4E-15 9.6E-20 152.0 13.1 115 888-1025 2-118 (224)
63 PLN03029 type-a response regul 99.6 4.3E-14 9.3E-19 152.0 15.6 118 886-1023 8-144 (222)
64 PRK10046 dpiA two-component re 99.5 1.2E-13 2.7E-18 148.7 16.4 115 887-1024 5-121 (225)
65 PRK10529 DNA-binding transcrip 99.5 1.6E-13 3.5E-18 146.5 16.8 116 888-1027 3-118 (225)
66 PRK04184 DNA topoisomerase VI 99.5 1.9E-13 4.1E-18 161.1 17.3 117 546-712 30-154 (535)
67 PRK11173 two-component respons 99.5 2.1E-13 4.6E-18 147.3 16.5 117 887-1027 4-120 (237)
68 PRK10816 DNA-binding transcrip 99.5 3E-13 6.5E-18 144.3 16.6 117 888-1027 2-118 (223)
69 PRK09836 DNA-binding transcrip 99.5 4.3E-13 9.2E-18 143.5 16.8 116 888-1026 2-117 (227)
70 PRK10643 DNA-binding transcrip 99.5 4.9E-13 1.1E-17 141.8 16.4 116 888-1026 2-117 (222)
71 PRK09468 ompR osmolarity respo 99.5 6E-13 1.3E-17 143.7 17.2 119 886-1027 5-123 (239)
72 PRK10766 DNA-binding transcrip 99.5 5E-13 1.1E-17 142.2 15.9 115 887-1025 3-117 (221)
73 PRK10430 DNA-binding transcrip 99.5 5.9E-13 1.3E-17 144.7 15.7 114 888-1023 3-119 (239)
74 COG3947 Response regulator con 99.5 8.3E-14 1.8E-18 147.6 8.5 115 888-1027 2-116 (361)
75 PRK10701 DNA-binding transcrip 99.5 7.6E-13 1.6E-17 143.1 16.1 116 888-1027 3-118 (240)
76 PRK10161 transcriptional regul 99.5 8.4E-13 1.8E-17 141.5 16.2 119 887-1026 3-121 (229)
77 PRK13856 two-component respons 99.5 7.6E-13 1.6E-17 143.5 15.9 115 888-1026 3-118 (241)
78 PRK10955 DNA-binding transcrip 99.5 9.7E-13 2.1E-17 140.8 16.4 114 888-1026 3-116 (232)
79 TIGR02154 PhoB phosphate regul 99.5 1E-12 2.2E-17 139.6 16.3 120 887-1027 3-122 (226)
80 PRK11517 transcriptional regul 99.5 1.5E-12 3.2E-17 138.5 16.9 116 888-1027 2-117 (223)
81 PRK10336 DNA-binding transcrip 99.4 1.2E-12 2.7E-17 138.6 16.0 116 888-1026 2-117 (219)
82 TIGR03787 marine_sort_RR prote 99.4 1.2E-12 2.6E-17 139.9 15.7 117 887-1026 1-119 (227)
83 TIGR02875 spore_0_A sporulatio 99.4 2E-12 4.3E-17 142.4 16.3 119 887-1026 3-123 (262)
84 TIGR01387 cztR_silR_copR heavy 99.4 2.5E-12 5.4E-17 136.0 16.3 116 889-1027 1-116 (218)
85 smart00387 HATPase_c Histidine 99.4 2.5E-12 5.4E-17 119.9 14.5 109 548-710 1-110 (111)
86 PRK11083 DNA-binding response 99.4 4.2E-12 9.2E-17 135.2 17.1 118 887-1027 4-121 (228)
87 COG4567 Response regulator con 99.4 2.8E-12 6.1E-17 123.8 13.2 115 887-1024 10-124 (182)
88 PRK10840 transcriptional regul 99.4 3.4E-12 7.4E-17 136.4 15.4 117 887-1026 4-125 (216)
89 CHL00148 orf27 Ycf27; Reviewed 99.4 5.8E-12 1.3E-16 135.6 16.0 116 887-1026 7-122 (240)
90 PRK09958 DNA-binding transcrip 99.4 7E-12 1.5E-16 131.5 15.8 117 888-1027 2-119 (204)
91 PRK14084 two-component respons 99.4 5.2E-12 1.1E-16 137.5 15.2 113 888-1025 2-116 (246)
92 PRK10923 glnG nitrogen regulat 99.4 5.3E-12 1.2E-16 151.0 16.4 116 887-1025 4-119 (469)
93 PRK11361 acetoacetate metaboli 99.4 6.4E-12 1.4E-16 149.7 16.7 118 886-1026 4-121 (457)
94 PRK15115 response regulator Gl 99.4 5.6E-12 1.2E-16 149.7 15.2 117 887-1026 6-122 (444)
95 PRK09483 response regulator; P 99.4 1E-11 2.3E-16 131.6 15.5 117 888-1027 3-121 (217)
96 TIGR02915 PEP_resp_reg putativ 99.4 6.2E-12 1.3E-16 149.4 14.8 113 889-1026 1-118 (445)
97 PRK09935 transcriptional regul 99.3 1.6E-11 3.4E-16 129.1 16.0 118 887-1027 4-123 (210)
98 PRK10360 DNA-binding transcrip 99.3 1.5E-11 3.4E-16 128.1 15.4 114 888-1027 3-118 (196)
99 PRK11697 putative two-componen 99.3 1.1E-11 2.4E-16 134.0 14.4 113 888-1026 3-117 (238)
100 PRK10365 transcriptional regul 99.3 6.5E-12 1.4E-16 149.0 13.7 116 887-1025 6-121 (441)
101 PRK10710 DNA-binding transcrip 99.3 2.7E-11 5.9E-16 130.3 17.0 116 887-1026 11-126 (240)
102 PRK12555 chemotaxis-specific m 99.3 1.2E-11 2.7E-16 141.5 14.9 114 888-1025 2-128 (337)
103 TIGR01818 ntrC nitrogen regula 99.3 1.1E-11 2.4E-16 148.0 14.6 114 889-1025 1-114 (463)
104 PF00512 HisKA: His Kinase A ( 99.3 9E-12 1.9E-16 108.0 9.9 66 436-501 1-68 (68)
105 PRK15479 transcriptional regul 99.3 4E-11 8.7E-16 127.0 16.1 116 888-1026 2-117 (221)
106 TIGR01052 top6b DNA topoisomer 99.3 1.9E-11 4.1E-16 142.9 13.1 111 546-709 22-139 (488)
107 KOG0519 Sensory transduction h 99.3 2.9E-11 6.2E-16 151.6 15.6 401 426-862 375-784 (786)
108 PRK14868 DNA topoisomerase VI 99.3 3.2E-11 7E-16 144.7 15.0 129 528-710 21-159 (795)
109 PRK00742 chemotaxis-specific m 99.3 7E-11 1.5E-15 136.2 16.1 114 887-1024 4-130 (354)
110 PRK10100 DNA-binding transcrip 99.3 5.9E-11 1.3E-15 127.0 14.1 115 886-1027 10-127 (216)
111 PRK11475 DNA-binding transcrip 99.2 6E-11 1.3E-15 126.0 13.5 106 899-1027 3-115 (207)
112 PRK09390 fixJ response regulat 99.2 8.2E-11 1.8E-15 122.0 14.2 118 886-1026 3-120 (202)
113 PRK09581 pleD response regulat 99.2 1.4E-10 3E-15 137.3 16.5 117 888-1025 4-120 (457)
114 cd00075 HATPase_c Histidine ki 99.2 1.2E-10 2.6E-15 106.7 12.4 101 553-708 1-103 (103)
115 PRK14867 DNA topoisomerase VI 99.2 7.5E-11 1.6E-15 141.7 13.8 114 547-712 28-151 (659)
116 COG2201 CheB Chemotaxis respon 99.2 7.5E-11 1.6E-15 131.7 12.0 102 888-1013 3-108 (350)
117 PRK13435 response regulator; P 99.2 3.3E-10 7.2E-15 112.8 14.8 114 886-1026 5-120 (145)
118 TIGR01925 spIIAB anti-sigma F 99.2 1.9E-10 4.1E-15 114.0 12.6 98 548-708 35-136 (137)
119 COG3707 AmiR Response regulato 99.2 1.4E-10 3E-15 117.9 11.0 112 887-1022 6-118 (194)
120 PRK10651 transcriptional regul 99.2 5.1E-10 1.1E-14 117.8 15.9 118 887-1027 7-126 (216)
121 PRK15369 two component system 99.2 5.6E-10 1.2E-14 116.4 15.7 118 887-1027 4-123 (211)
122 PRK13558 bacterio-opsin activa 99.2 2E-10 4.3E-15 143.5 14.4 115 887-1024 8-124 (665)
123 PRK10610 chemotaxis regulatory 99.1 1.2E-09 2.6E-14 103.3 16.1 119 887-1026 6-125 (129)
124 PRK10403 transcriptional regul 99.1 6.7E-10 1.4E-14 116.7 15.7 117 887-1026 7-125 (215)
125 COG3452 Predicted periplasmic 99.1 4.1E-09 9E-14 111.0 19.8 185 84-321 14-200 (297)
126 PRK15411 rcsA colanic acid cap 99.1 8.9E-10 1.9E-14 117.3 14.2 116 888-1027 2-123 (207)
127 COG0643 CheA Chemotaxis protei 99.1 1E-08 2.2E-13 126.0 24.8 140 513-711 393-574 (716)
128 PRK03660 anti-sigma F factor; 99.1 1.2E-09 2.5E-14 109.6 13.3 101 549-712 36-140 (146)
129 PRK09191 two-component respons 99.1 1.5E-09 3.2E-14 119.1 15.0 116 886-1027 137-254 (261)
130 PRK10693 response regulator of 99.0 1.7E-09 3.6E-14 122.1 11.7 89 915-1026 2-91 (303)
131 COG4585 Signal transduction hi 99.0 2.2E-07 4.8E-12 107.7 29.0 117 522-710 249-365 (365)
132 COG3851 UhpB Signal transducti 99.0 2.4E-07 5.3E-12 101.4 27.0 189 436-709 302-493 (497)
133 cd00156 REC Signal receiver do 99.0 6.2E-09 1.3E-13 94.1 12.7 112 890-1024 1-112 (113)
134 COG3920 Signal transduction hi 98.9 9.7E-07 2.1E-11 94.8 26.4 194 436-712 18-217 (221)
135 COG3850 NarQ Signal transducti 98.8 2E-06 4.3E-11 99.4 26.6 184 442-709 374-567 (574)
136 PRK04069 serine-protein kinase 98.8 1E-07 2.2E-12 97.5 13.5 103 549-712 39-145 (161)
137 COG2972 Predicted signal trans 98.7 4.7E-06 1E-10 99.6 29.1 65 636-711 386-453 (456)
138 PRK15029 arginine decarboxylas 98.7 6.5E-08 1.4E-12 119.5 11.8 106 888-1016 2-121 (755)
139 COG3279 LytT Response regulato 98.6 1.4E-07 3.1E-12 102.9 10.4 112 888-1024 3-116 (244)
140 COG3275 LytS Putative regulato 98.6 1.6E-05 3.6E-10 90.6 25.2 129 508-712 415-553 (557)
141 smart00388 HisKA His Kinase A 98.5 4.3E-07 9.4E-12 76.5 8.3 64 437-500 2-65 (66)
142 TIGR01924 rsbW_low_gc serine-p 98.5 1.4E-06 3.1E-11 88.8 12.8 102 549-711 39-144 (159)
143 KOG0787 Dehydrogenase kinase [ 98.4 3.5E-05 7.5E-10 85.7 21.0 183 472-710 174-380 (414)
144 COG4564 Signal transduction hi 98.4 0.00019 4.1E-09 78.4 25.4 183 448-711 262-448 (459)
145 PF14501 HATPase_c_5: GHKL dom 98.3 1.4E-05 2.9E-10 75.0 13.0 94 549-710 2-99 (100)
146 PRK11107 hybrid sensory histid 98.2 8.4E-06 1.8E-10 105.8 14.9 118 883-1025 533-650 (919)
147 cd00082 HisKA Histidine Kinase 98.1 1.5E-05 3.3E-10 66.4 8.1 62 436-497 3-65 (65)
148 COG3706 PleD Response regulato 98.0 4.9E-06 1.1E-10 96.4 4.9 92 911-1027 13-104 (435)
149 TIGR00585 mutl DNA mismatch re 97.9 6.3E-05 1.4E-09 85.4 12.3 97 551-707 21-125 (312)
150 PF13581 HATPase_c_2: Histidin 97.6 0.00051 1.1E-08 66.8 11.2 93 549-707 28-124 (125)
151 COG1389 DNA topoisomerase VI, 97.6 0.00024 5.2E-09 80.9 9.0 115 549-711 33-151 (538)
152 smart00448 REC cheY-homologous 96.7 0.0071 1.5E-07 46.3 7.4 54 888-942 2-55 (55)
153 COG2172 RsbW Anti-sigma regula 96.6 0.018 4E-07 57.8 11.2 90 549-701 37-131 (146)
154 PRK00095 mutL DNA mismatch rep 96.6 0.0095 2.1E-07 73.8 11.0 87 552-698 22-114 (617)
155 PF06490 FleQ: Flagellar regul 96.4 0.024 5.2E-07 54.1 9.8 106 888-1024 1-107 (109)
156 PF00072 Response_reg: Respons 96.0 0.05 1.1E-06 50.9 9.8 110 741-858 1-111 (112)
157 PF13589 HATPase_c_3: Histidin 95.6 0.011 2.4E-07 58.8 3.7 67 638-709 35-106 (137)
158 COG0745 OmpR Response regulato 95.4 0.16 3.4E-06 55.2 12.1 117 739-864 1-118 (229)
159 PRK05559 DNA topoisomerase IV 95.0 0.044 9.5E-07 68.0 7.3 90 549-698 34-138 (631)
160 PRK11091 aerobic respiration c 94.3 0.2 4.3E-06 64.3 10.9 195 737-955 524-719 (779)
161 COG2204 AtoC Response regulato 94.2 0.29 6.2E-06 58.0 10.9 179 739-925 5-210 (464)
162 cd02071 MM_CoA_mut_B12_BD meth 93.8 1.2 2.7E-05 43.2 13.0 107 893-1022 10-121 (122)
163 PRK14083 HSP90 family protein; 93.4 0.056 1.2E-06 66.4 3.5 57 638-698 64-127 (601)
164 PRK02261 methylaspartate mutas 93.4 2.1 4.7E-05 42.6 14.0 119 886-1026 3-135 (137)
165 TIGR01055 parE_Gneg DNA topois 93.3 0.1 2.2E-06 64.6 5.4 50 638-687 63-124 (625)
166 PRK15347 two component system 93.2 0.77 1.7E-05 59.9 13.7 121 737-863 689-811 (921)
167 TIGR01059 gyrB DNA gyrase, B s 93.0 0.19 4.1E-06 62.8 7.3 29 549-577 27-58 (654)
168 TIGR02956 TMAO_torS TMAO reduc 92.3 0.76 1.6E-05 60.4 11.9 121 737-863 701-822 (968)
169 PRK05644 gyrB DNA gyrase subun 92.3 0.25 5.4E-06 61.4 6.9 88 543-686 26-130 (638)
170 PLN03029 type-a response regul 92.3 0.99 2.1E-05 48.7 10.8 120 737-860 7-144 (222)
171 COG0784 CheY FOG: CheY-like re 91.2 2.6 5.6E-05 40.3 11.5 117 737-861 4-123 (130)
172 PF03709 OKR_DC_1_N: Orn/Lys/A 91.1 0.91 2E-05 43.7 8.0 95 900-1017 7-103 (115)
173 PRK10841 hybrid sensory kinase 91.0 1.5 3.1E-05 57.5 12.3 119 736-862 799-917 (924)
174 PRK05218 heat shock protein 90 90.8 0.77 1.7E-05 57.0 9.0 58 638-699 74-143 (613)
175 PTZ00272 heat shock protein 83 90.4 0.22 4.7E-06 62.2 3.7 20 638-657 73-92 (701)
176 PRK00742 chemotaxis-specific m 89.9 23 0.0005 40.9 19.8 106 738-850 3-110 (354)
177 COG5381 Uncharacterized protei 89.6 0.74 1.6E-05 45.3 5.8 28 554-581 65-92 (184)
178 PRK13837 two-component VirA-li 89.3 5.2 0.00011 51.9 15.2 119 737-864 696-814 (828)
179 cd02067 B12-binding B12 bindin 89.2 2.9 6.2E-05 40.2 9.8 95 893-1011 10-110 (119)
180 PRK11466 hybrid sensory histid 89.0 1.9 4.1E-05 56.3 11.1 120 737-863 680-799 (914)
181 COG4999 Uncharacterized domain 89.0 2.7 5.9E-05 40.1 8.8 116 883-1025 8-126 (140)
182 TIGR02154 PhoB phosphate regul 88.0 5.5 0.00012 41.7 12.0 119 739-863 3-121 (226)
183 PTZ00130 heat shock protein 90 87.7 0.71 1.5E-05 58.1 5.5 47 638-684 136-193 (814)
184 TIGR01818 ntrC nitrogen regula 87.4 2.3 5E-05 50.9 9.6 155 741-910 1-155 (463)
185 PRK10161 transcriptional regul 87.4 5.6 0.00012 42.1 11.7 119 739-863 3-121 (229)
186 PRK12555 chemotaxis-specific m 87.1 18 0.0004 41.4 16.4 117 739-862 1-128 (337)
187 TIGR00640 acid_CoA_mut_C methy 87.1 8.5 0.00018 38.1 11.7 111 893-1024 13-126 (132)
188 COG3437 Response regulator con 86.7 2.9 6.4E-05 47.5 9.1 115 737-858 13-129 (360)
189 PRK10955 DNA-binding transcrip 86.5 6.3 0.00014 41.6 11.4 114 740-863 3-116 (232)
190 PRK15399 lysine decarboxylase 86.2 2.5 5.5E-05 53.0 9.0 98 888-1010 2-105 (713)
191 TIGR03815 CpaE_hom_Actino heli 86.0 3.8 8.3E-05 46.7 9.9 85 910-1025 1-86 (322)
192 smart00433 TOP2c Topoisomerase 85.3 0.98 2.1E-05 55.9 4.9 48 638-685 34-93 (594)
193 PRK09468 ompR osmolarity respo 85.1 9.3 0.0002 40.7 12.0 119 738-864 5-123 (239)
194 COG4566 TtrR Response regulato 85.1 6.6 0.00014 40.9 9.9 118 739-864 5-122 (202)
195 COG0323 MutL DNA mismatch repa 84.3 1.2 2.7E-05 55.4 5.2 27 638-664 54-80 (638)
196 PRK11173 two-component respons 84.2 9.2 0.0002 40.8 11.4 116 739-863 4-119 (237)
197 PRK10816 DNA-binding transcrip 84.2 22 0.00048 37.3 14.3 118 739-864 1-118 (223)
198 PRK09836 DNA-binding transcrip 83.9 11 0.00023 39.9 11.7 117 739-863 1-117 (227)
199 PRK10336 DNA-binding transcrip 82.7 14 0.00031 38.4 12.0 117 739-863 1-117 (219)
200 PRK15400 lysine decarboxylase 82.2 4.3 9.2E-05 51.0 8.6 80 888-992 2-87 (714)
201 CHL00148 orf27 Ycf27; Reviewed 81.1 16 0.00036 38.6 11.9 117 738-863 6-122 (240)
202 PRK10766 DNA-binding transcrip 81.1 16 0.00035 38.2 11.7 116 739-863 3-118 (221)
203 PRK10529 DNA-binding transcrip 81.1 36 0.00077 35.7 14.4 116 739-863 2-117 (225)
204 PRK11517 transcriptional regul 80.6 15 0.00032 38.4 11.3 116 739-863 1-116 (223)
205 PRK11083 DNA-binding response 80.5 20 0.00044 37.4 12.2 118 739-864 4-121 (228)
206 PRK10643 DNA-binding transcrip 80.4 13 0.00027 38.9 10.6 117 739-863 1-117 (222)
207 PRK10701 DNA-binding transcrip 80.3 16 0.00035 39.0 11.5 116 740-864 3-118 (240)
208 PRK10430 DNA-binding transcrip 80.0 17 0.00036 39.3 11.6 117 739-861 2-120 (239)
209 TIGR02875 spore_0_A sporulatio 79.8 17 0.00037 39.7 11.7 120 739-864 3-124 (262)
210 cd04728 ThiG Thiazole synthase 79.0 17 0.00038 39.5 10.8 87 904-1021 117-220 (248)
211 PRK00208 thiG thiazole synthas 78.4 18 0.0004 39.4 10.8 86 904-1020 117-219 (250)
212 TIGR01501 MthylAspMutase methy 78.4 33 0.00073 34.0 11.9 108 895-1025 14-132 (134)
213 PRK10840 transcriptional regul 77.9 22 0.00048 37.5 11.6 121 738-863 3-125 (216)
214 PRK10610 chemotaxis regulatory 76.4 39 0.00084 30.7 11.6 119 738-862 5-124 (129)
215 TIGR01058 parE_Gpos DNA topois 76.3 2 4.3E-05 53.5 3.2 51 638-688 67-129 (637)
216 TIGR03787 marine_sort_RR prote 76.3 28 0.00061 36.6 11.8 118 740-863 2-119 (227)
217 PRK15115 response regulator Gl 76.1 11 0.00024 44.9 9.5 118 738-863 5-122 (444)
218 PRK10365 transcriptional regul 76.0 13 0.00028 44.2 10.0 118 738-863 5-122 (441)
219 PRK14939 gyrB DNA gyrase subun 75.9 1.9 4.1E-05 54.5 2.9 35 543-577 25-65 (756)
220 cd02072 Glm_B12_BD B12 binding 75.7 47 0.001 32.7 12.0 106 895-1023 12-128 (128)
221 cd02070 corrinoid_protein_B12- 75.5 23 0.00051 37.5 10.8 101 886-1010 82-191 (201)
222 PRK09959 hybrid sensory histid 75.1 13 0.00027 50.4 10.7 118 738-863 958-1075(1197)
223 PRK09958 DNA-binding transcrip 75.1 20 0.00043 37.0 10.1 117 739-863 1-118 (204)
224 PRK10923 glnG nitrogen regulat 75.0 16 0.00034 44.0 10.4 117 739-863 4-120 (469)
225 PRK10046 dpiA two-component re 74.9 31 0.00066 36.9 11.7 116 739-862 5-122 (225)
226 PRK13856 two-component respons 74.9 23 0.0005 37.9 10.8 116 740-863 3-118 (241)
227 PHA02569 39 DNA topoisomerase 74.3 2.5 5.5E-05 52.3 3.4 51 638-688 80-144 (602)
228 PF02310 B12-binding: B12 bind 73.5 15 0.00032 35.1 7.9 93 895-1011 13-112 (121)
229 COG4565 CitB Response regulato 73.4 15 0.00033 39.0 8.4 114 740-861 2-117 (224)
230 cd02069 methionine_synthase_B1 73.4 21 0.00045 38.3 9.8 103 887-1012 89-203 (213)
231 PRK13435 response regulator; P 71.9 52 0.0011 32.0 11.7 114 738-862 5-119 (145)
232 COG4753 Response regulator con 70.4 14 0.0003 44.2 8.2 115 740-864 3-122 (475)
233 PRK10710 DNA-binding transcrip 69.4 62 0.0013 34.1 12.5 116 739-863 11-126 (240)
234 PRK11361 acetoacetate metaboli 68.9 32 0.00069 41.1 11.1 118 738-863 4-121 (457)
235 PRK14084 two-component respons 68.6 44 0.00096 35.9 11.3 115 739-863 1-117 (246)
236 PRK09483 response regulator; P 67.8 37 0.00081 35.3 10.3 117 739-863 2-120 (217)
237 PRK15479 transcriptional regul 67.6 37 0.0008 35.2 10.2 116 740-863 2-117 (221)
238 PRK09191 two-component respons 66.9 63 0.0014 35.0 12.2 115 739-863 138-253 (261)
239 PF02254 TrkA_N: TrkA-N domain 66.1 44 0.00095 31.5 9.4 93 887-1009 22-115 (116)
240 COG0326 HtpG Molecular chapero 65.4 7 0.00015 47.8 4.5 49 637-685 74-133 (623)
241 PRK10618 phosphotransfer inter 64.7 23 0.0005 46.3 9.3 38 733-770 684-721 (894)
242 TIGR03321 alt_F1F0_F0_B altern 64.1 2.3E+02 0.0049 31.1 17.8 19 549-567 191-209 (246)
243 TIGR01387 cztR_silR_copR heavy 64.1 45 0.00096 34.5 9.9 115 741-863 1-115 (218)
244 PRK13557 histidine kinase; Pro 63.7 72 0.0016 38.4 13.0 122 736-863 413-534 (540)
245 COG2197 CitB Response regulato 63.0 70 0.0015 34.2 11.2 116 740-863 2-119 (211)
246 COG3947 Response regulator con 61.7 46 0.00099 37.2 9.3 114 740-863 2-115 (361)
247 PRK11697 putative two-componen 61.1 68 0.0015 34.1 10.9 114 739-863 2-117 (238)
248 PLN03237 DNA topoisomerase 2; 60.2 14 0.00031 49.6 6.2 53 638-690 112-176 (1465)
249 COG4567 Response regulator con 58.3 61 0.0013 32.8 8.7 114 740-861 11-124 (182)
250 PRK01130 N-acetylmannosamine-6 57.2 88 0.0019 33.5 10.9 83 902-1009 110-201 (221)
251 PRK00043 thiE thiamine-phospha 55.4 1.4E+02 0.003 31.4 11.9 92 908-1024 102-207 (212)
252 cd00156 REC Signal receiver do 55.3 70 0.0015 27.3 8.3 110 743-860 2-111 (113)
253 TIGR02915 PEP_resp_reg putativ 54.4 63 0.0014 38.5 10.1 116 741-863 1-118 (445)
254 cd05212 NAD_bind_m-THF_DH_Cycl 54.1 40 0.00087 33.7 6.9 54 884-943 26-83 (140)
255 PRK10360 DNA-binding transcrip 53.5 79 0.0017 32.2 9.5 113 740-863 3-117 (196)
256 PRK09390 fixJ response regulat 53.1 65 0.0014 32.4 8.8 117 739-863 4-120 (202)
257 PRK09935 transcriptional regul 52.9 1.1E+02 0.0024 31.3 10.6 118 738-863 3-122 (210)
258 PRK13111 trpA tryptophan synth 52.9 38 0.00083 37.5 7.2 44 980-1023 88-137 (258)
259 PF03602 Cons_hypoth95: Conser 52.7 19 0.00041 37.7 4.6 69 887-955 66-139 (183)
260 TIGR01334 modD putative molybd 52.2 56 0.0012 36.6 8.4 71 912-1008 191-261 (277)
261 TIGR02370 pyl_corrinoid methyl 52.2 92 0.002 32.9 9.8 98 888-1009 86-192 (197)
262 PF06490 FleQ: Flagellar regul 52.0 97 0.0021 29.5 8.9 33 740-772 1-33 (109)
263 TIGR00007 phosphoribosylformim 50.3 1.2E+02 0.0025 32.7 10.5 66 920-1009 148-217 (230)
264 PRK03659 glutathione-regulated 50.2 95 0.002 38.8 10.9 95 886-1010 423-518 (601)
265 PRK09426 methylmalonyl-CoA mut 49.9 98 0.0021 39.4 11.0 110 893-1025 593-707 (714)
266 COG4122 Predicted O-methyltran 49.5 53 0.0011 35.5 7.4 55 887-942 85-143 (219)
267 cd04729 NanE N-acetylmannosami 49.0 1.8E+02 0.0039 31.1 11.6 81 904-1009 116-205 (219)
268 PRK08385 nicotinate-nucleotide 48.2 1.5E+02 0.0033 33.2 11.0 96 888-1008 156-257 (278)
269 PRK10669 putative cation:proto 47.9 1.8E+02 0.004 35.9 12.9 109 886-1027 440-549 (558)
270 PF07568 HisKA_2: Histidine ki 47.7 1.2E+02 0.0026 26.8 8.3 72 444-524 2-73 (76)
271 KOG1977 DNA mismatch repair pr 47.6 34 0.00074 42.1 6.0 44 636-679 49-98 (1142)
272 COG0512 PabA Anthranilate/para 47.6 32 0.00068 36.2 5.1 52 887-939 2-53 (191)
273 PLN02591 tryptophan synthase 46.6 55 0.0012 36.1 7.1 44 981-1024 78-127 (250)
274 PF10087 DUF2325: Uncharacteri 46.3 2.1E+02 0.0044 26.4 10.0 64 888-956 1-70 (97)
275 PF01596 Methyltransf_3: O-met 46.2 50 0.0011 35.3 6.6 55 886-940 70-130 (205)
276 COG2185 Sbm Methylmalonyl-CoA 45.9 2.2E+02 0.0048 28.7 10.5 113 892-1025 22-137 (143)
277 KOG1979 DNA mismatch repair pr 45.9 25 0.00054 42.4 4.5 26 638-663 58-83 (694)
278 PRK13587 1-(5-phosphoribosyl)- 45.4 1.3E+02 0.0029 32.7 9.9 55 932-1009 163-220 (234)
279 cd00331 IGPS Indole-3-glycerol 45.1 2.7E+02 0.0058 29.6 12.2 80 906-1009 117-200 (217)
280 PLN03128 DNA topoisomerase 2; 45.0 30 0.00066 46.0 5.6 50 638-687 87-148 (1135)
281 PRK00278 trpC indole-3-glycero 44.0 3.1E+02 0.0067 30.4 12.7 105 890-1018 139-253 (260)
282 cd04723 HisA_HisF Phosphoribos 44.0 1.3E+02 0.0029 32.6 9.7 67 919-1009 148-217 (233)
283 PRK10558 alpha-dehydro-beta-de 43.6 2E+02 0.0044 31.8 11.1 99 902-1022 10-111 (256)
284 cd04726 KGPDC_HPS 3-Keto-L-gul 43.5 2.9E+02 0.0062 28.8 12.0 85 899-1009 92-185 (202)
285 PRK05458 guanosine 5'-monophos 43.3 3.1E+02 0.0067 31.5 12.7 97 888-1009 113-229 (326)
286 PF06295 DUF1043: Protein of u 42.5 1.1E+02 0.0023 30.2 7.7 60 89-150 2-61 (128)
287 PRK13125 trpA tryptophan synth 42.1 2.5E+02 0.0055 30.6 11.5 90 898-1011 117-215 (244)
288 PTZ00108 DNA topoisomerase 2-l 40.8 24 0.00053 47.5 3.9 51 638-688 95-157 (1388)
289 TIGR00262 trpA tryptophan synt 40.7 80 0.0017 34.9 7.4 43 981-1023 87-135 (256)
290 CHL00162 thiG thiamin biosynth 40.2 2.6E+02 0.0056 30.9 10.7 97 901-1023 128-236 (267)
291 PRK06543 nicotinate-nucleotide 40.0 2E+02 0.0044 32.3 10.3 68 912-1008 196-263 (281)
292 COG0157 NadC Nicotinate-nucleo 39.7 1.1E+02 0.0023 34.2 7.9 93 888-1007 160-259 (280)
293 PRK03562 glutathione-regulated 39.6 1.8E+02 0.0039 36.6 11.0 93 886-1008 423-516 (621)
294 PRK15369 two component system 39.3 2.2E+02 0.0048 28.6 10.2 118 738-863 3-122 (211)
295 COG5385 Uncharacterized protei 39.0 1.1E+02 0.0024 31.3 7.2 121 440-577 18-139 (214)
296 cd04724 Tryptophan_synthase_al 38.7 87 0.0019 34.3 7.2 41 981-1021 76-122 (242)
297 PRK10651 transcriptional regul 38.7 2.3E+02 0.005 28.9 10.3 118 738-863 6-125 (216)
298 PRK10128 2-keto-3-deoxy-L-rham 38.6 2.8E+02 0.0061 30.9 11.2 99 902-1022 9-110 (267)
299 PF10669 Phage_Gp23: Protein g 38.6 3.3E+02 0.0071 25.3 12.4 20 428-447 61-80 (121)
300 COG0742 N6-adenine-specific me 38.5 1E+02 0.0022 32.5 7.2 56 887-942 67-125 (187)
301 PF01408 GFO_IDH_MocA: Oxidore 38.4 1.8E+02 0.0038 27.4 8.6 34 990-1023 73-108 (120)
302 PRK07896 nicotinate-nucleotide 37.3 1.2E+02 0.0027 34.1 8.2 71 912-1008 202-272 (289)
303 cd00452 KDPG_aldolase KDPG and 36.7 1.9E+02 0.0042 30.2 9.2 78 906-1010 93-171 (190)
304 COG3105 Uncharacterized protei 36.3 2.4E+02 0.0053 27.7 8.7 54 92-145 14-72 (138)
305 TIGR01037 pyrD_sub1_fam dihydr 36.1 1.1E+02 0.0024 34.5 7.8 48 981-1028 234-287 (300)
306 PRK10742 putative methyltransf 35.4 4.1E+02 0.009 29.3 11.6 58 886-945 110-178 (250)
307 cd04730 NPD_like 2-Nitropropan 35.3 3.7E+02 0.008 28.8 11.5 83 903-1010 95-185 (236)
308 TIGR03239 GarL 2-dehydro-3-deo 35.3 3.9E+02 0.0084 29.4 11.6 84 917-1022 20-104 (249)
309 cd02068 radical_SAM_B12_BD B12 35.2 2.5E+02 0.0054 27.0 9.2 104 898-1025 4-111 (127)
310 PRK05848 nicotinate-nucleotide 34.8 2.7E+02 0.0058 31.2 10.3 72 912-1009 185-256 (273)
311 PF14689 SPOB_a: Sensor_kinase 34.8 1.6E+02 0.0035 25.0 6.7 45 439-487 14-58 (62)
312 cd00564 TMP_TenI Thiamine mono 34.7 2.9E+02 0.0062 28.3 10.2 75 909-1009 94-177 (196)
313 PF01729 QRPTase_C: Quinolinat 34.2 98 0.0021 32.0 6.3 72 912-1009 83-154 (169)
314 cd04732 HisA HisA. Phosphorib 34.1 3.5E+02 0.0076 28.9 11.1 65 921-1009 150-218 (234)
315 PRK12724 flagellar biosynthesi 34.0 3.5E+02 0.0075 32.4 11.4 109 886-1013 252-370 (432)
316 TIGR00566 trpG_papA glutamine 33.9 1E+02 0.0022 32.3 6.5 48 889-937 2-49 (188)
317 TIGR00693 thiE thiamine-phosph 33.6 2.7E+02 0.0058 29.0 9.8 70 915-1009 102-179 (196)
318 PRK00748 1-(5-phosphoribosyl)- 33.5 1.4E+02 0.003 32.1 7.8 66 920-1009 149-219 (233)
319 PRK07428 nicotinate-nucleotide 33.4 1.3E+02 0.0028 33.9 7.6 70 913-1008 200-269 (288)
320 PRK05458 guanosine 5'-monophos 32.9 1.3E+02 0.0027 34.7 7.5 66 920-1008 100-166 (326)
321 TIGR00736 nifR3_rel_arch TIM-b 32.8 1.6E+02 0.0034 32.2 7.9 29 981-1009 191-219 (231)
322 PRK10403 transcriptional regul 32.7 3E+02 0.0064 28.0 10.0 116 739-862 7-124 (215)
323 PRK11677 hypothetical protein; 32.6 2.7E+02 0.0058 27.8 8.7 60 89-150 6-65 (134)
324 PF05690 ThiG: Thiazole biosyn 31.9 2.5E+02 0.0055 30.6 9.0 84 900-1009 113-203 (247)
325 PRK11840 bifunctional sulfur c 31.8 4.4E+02 0.0096 30.2 11.4 102 894-1022 182-295 (326)
326 PF11044 TMEMspv1-c74-12: Plec 31.6 2.7E+02 0.0058 22.2 6.5 28 387-414 6-33 (49)
327 CHL00200 trpA tryptophan synth 31.5 1.2E+02 0.0027 33.6 7.0 41 981-1021 91-137 (263)
328 PRK13428 F0F1 ATP synthase sub 31.3 7.9E+02 0.017 29.5 14.2 63 390-452 6-73 (445)
329 PRK00811 spermidine synthase; 31.3 2E+02 0.0042 32.3 8.7 55 887-943 101-162 (283)
330 PRK14471 F0F1 ATP synthase sub 30.6 5.9E+02 0.013 25.9 14.6 62 388-449 11-77 (164)
331 PRK15411 rcsA colanic acid cap 30.5 4.7E+02 0.01 27.7 11.1 116 740-863 2-122 (207)
332 cd02065 B12-binding_like B12 b 30.5 1.9E+02 0.0042 27.3 7.5 62 893-955 10-75 (125)
333 PRK06231 F0F1 ATP synthase sub 30.1 7E+02 0.015 26.6 14.7 68 386-453 49-121 (205)
334 PRK13558 bacterio-opsin activa 29.9 1.6E+02 0.0034 37.0 8.6 116 739-862 8-125 (665)
335 KOG1978 DNA mismatch repair pr 29.6 49 0.0011 40.9 3.6 25 638-662 51-75 (672)
336 cd04722 TIM_phosphate_binding 29.5 3E+02 0.0066 27.7 9.3 57 930-1009 135-198 (200)
337 COG3105 Uncharacterized protei 29.5 5E+02 0.011 25.6 9.5 15 394-408 13-27 (138)
338 PRK06096 molybdenum transport 29.4 1.8E+02 0.0038 32.8 7.8 71 912-1008 192-262 (284)
339 PRK07259 dihydroorotate dehydr 29.3 1.3E+02 0.0027 34.0 6.8 47 981-1027 234-286 (301)
340 PRK07649 para-aminobenzoate/an 29.2 67 0.0015 33.9 4.3 48 889-937 2-49 (195)
341 KOG2335 tRNA-dihydrouridine sy 28.4 3.2E+02 0.007 31.6 9.6 86 888-1010 147-233 (358)
342 PRK06731 flhF flagellar biosyn 28.1 5.6E+02 0.012 28.6 11.4 107 887-1013 104-222 (270)
343 TIGR00735 hisF imidazoleglycer 27.8 3.9E+02 0.0083 29.4 10.1 42 981-1022 199-247 (254)
344 PRK14974 cell division protein 27.4 5.3E+02 0.012 29.8 11.4 108 886-1013 168-290 (336)
345 TIGR03151 enACPred_II putative 27.3 4E+02 0.0086 30.3 10.3 83 902-1009 101-189 (307)
346 PF07851 TMPIT: TMPIT-like pro 27.2 7.3E+02 0.016 28.6 12.1 80 414-495 7-90 (330)
347 PRK11889 flhF flagellar biosyn 26.8 5.6E+02 0.012 30.6 11.3 108 886-1013 269-388 (436)
348 PRK06559 nicotinate-nucleotide 26.7 3.8E+02 0.0082 30.3 9.7 92 888-1008 169-267 (290)
349 PRK10100 DNA-binding transcrip 26.6 4.5E+02 0.0098 28.1 10.2 116 738-863 10-126 (216)
350 PRK15426 putative diguanylate 26.3 1.2E+03 0.027 28.2 28.4 63 87-149 24-86 (570)
351 PRK15029 arginine decarboxylas 26.3 3.6E+02 0.0079 34.7 10.6 72 739-811 1-81 (755)
352 cd00331 IGPS Indole-3-glycerol 26.1 2.3E+02 0.005 30.1 7.8 43 981-1023 72-116 (217)
353 smart00448 REC cheY-homologous 26.1 2.4E+02 0.0052 19.9 7.0 39 740-778 2-40 (55)
354 PRK06106 nicotinate-nucleotide 26.1 2E+02 0.0044 32.3 7.5 68 912-1008 197-264 (281)
355 TIGR01163 rpe ribulose-phospha 25.9 4.6E+02 0.01 27.3 10.1 100 889-1009 83-192 (210)
356 PTZ00109 DNA gyrase subunit b; 25.9 12 0.00027 47.7 -2.2 18 671-688 246-264 (903)
357 TIGR00262 trpA tryptophan synt 25.8 8.4E+02 0.018 26.9 12.3 97 889-1011 119-228 (256)
358 TIGR00336 pyrE orotate phospho 25.7 2.7E+02 0.0058 28.7 7.9 33 883-915 105-140 (173)
359 PLN02335 anthranilate synthase 25.3 1.8E+02 0.004 31.3 6.9 51 886-937 18-68 (222)
360 COG3452 Predicted periplasmic 25.2 3.7E+02 0.008 29.9 8.8 65 86-150 11-79 (297)
361 TIGR02855 spore_yabG sporulati 25.1 3.4E+02 0.0073 30.3 8.6 96 887-1005 105-221 (283)
362 PRK01130 N-acetylmannosamine-6 25.0 2E+02 0.0043 30.8 7.1 42 981-1023 56-116 (221)
363 PRK13453 F0F1 ATP synthase sub 24.8 7.8E+02 0.017 25.3 14.6 60 391-450 24-88 (173)
364 PRK09016 quinolinate phosphori 24.8 2.3E+02 0.0051 32.0 7.7 68 912-1008 211-278 (296)
365 PF05582 Peptidase_U57: YabG p 24.8 5E+02 0.011 29.2 9.9 96 887-1005 106-222 (287)
366 cd00429 RPE Ribulose-5-phospha 24.5 6E+02 0.013 26.4 10.6 86 903-1009 98-193 (211)
367 PRK06978 nicotinate-nucleotide 24.4 2.2E+02 0.0048 32.2 7.4 68 912-1008 208-275 (294)
368 TIGR00064 ftsY signal recognit 23.8 6.9E+02 0.015 27.8 11.2 110 886-1010 100-225 (272)
369 PRK05703 flhF flagellar biosyn 23.7 4.8E+02 0.01 31.1 10.6 109 886-1013 251-368 (424)
370 PRK06774 para-aminobenzoate sy 23.7 1.3E+02 0.0028 31.4 5.3 48 889-937 2-49 (191)
371 TIGR00343 pyridoxal 5'-phospha 23.6 1.2E+02 0.0025 34.1 4.9 41 981-1021 197-244 (287)
372 COG0159 TrpA Tryptophan syntha 23.6 1.6E+02 0.0034 32.8 5.9 35 980-1014 93-133 (265)
373 TIGR02311 HpaI 2,4-dihydroxyhe 23.3 6E+02 0.013 27.9 10.5 85 917-1023 20-105 (249)
374 PRK14474 F0F1 ATP synthase sub 23.1 1E+03 0.022 26.1 14.6 25 387-411 7-31 (250)
375 PLN02589 caffeoyl-CoA O-methyl 22.9 2.9E+02 0.0064 30.4 7.9 54 887-940 105-165 (247)
376 PRK11359 cyclic-di-GMP phospho 22.9 5.7E+02 0.012 32.6 12.0 105 900-1026 681-796 (799)
377 PRK13566 anthranilate synthase 22.9 2.3E+02 0.005 36.3 8.0 53 883-937 523-575 (720)
378 PRK10299 PhoPQ regulatory prot 22.8 82 0.0018 25.2 2.5 10 117-126 22-31 (47)
379 PF01564 Spermine_synth: Sperm 22.4 1.4E+02 0.0029 32.9 5.2 68 887-955 101-179 (246)
380 PRK05637 anthranilate synthase 22.3 1.6E+02 0.0035 31.4 5.7 49 887-937 2-50 (208)
381 PLN02274 inosine-5'-monophosph 22.2 9.3E+02 0.02 29.5 12.7 98 887-1009 261-379 (505)
382 PLN02716 nicotinate-nucleotide 22.2 3E+02 0.0065 31.4 7.9 72 913-1008 207-288 (308)
383 PRK14472 F0F1 ATP synthase sub 22.2 8.7E+02 0.019 25.0 14.7 20 412-431 50-69 (175)
384 PF08452 DNAP_B_exo_N: DNA pol 22.1 31 0.00067 22.8 0.1 9 29-37 5-13 (22)
385 PRK12723 flagellar biosynthesi 21.9 7.8E+02 0.017 29.1 11.6 109 886-1013 206-323 (388)
386 PRK04302 triosephosphate isome 21.9 9.9E+02 0.021 25.5 11.9 29 981-1009 173-201 (223)
387 PRK08007 para-aminobenzoate sy 21.8 1.1E+02 0.0024 32.0 4.2 49 889-938 2-50 (187)
388 TIGR00095 RNA methyltransferas 21.3 4.7E+02 0.01 27.4 8.8 67 887-953 73-143 (189)
389 COG0187 GyrB Type IIA topoisom 21.2 65 0.0014 39.7 2.6 51 638-688 69-131 (635)
390 PTZ00314 inosine-5'-monophosph 20.9 6.8E+02 0.015 30.6 11.2 99 886-1009 253-372 (495)
391 PRK10697 DNA-binding transcrip 20.7 2.3E+02 0.0051 27.5 5.8 34 120-153 76-109 (118)
392 cd04727 pdxS PdxS is a subunit 20.7 1.6E+02 0.0035 33.0 5.2 43 981-1023 194-243 (283)
393 PRK12704 phosphodiesterase; Pr 20.7 81 0.0018 38.6 3.3 43 983-1025 251-295 (520)
394 cd01948 EAL EAL domain. This d 20.6 2.9E+02 0.0062 29.2 7.3 94 900-1015 135-239 (240)
395 PLN02781 Probable caffeoyl-CoA 20.6 3.6E+02 0.0077 29.3 8.0 54 887-940 94-153 (234)
396 PRK02083 imidazole glycerol ph 20.4 6.8E+02 0.015 27.3 10.3 43 981-1023 197-246 (253)
397 PLN02823 spermine synthase 20.3 2.4E+02 0.0052 32.5 6.9 55 887-943 128-188 (336)
No 1
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=5.6e-60 Score=606.74 Aligned_cols=505 Identities=36% Similarity=0.521 Sum_probs=409.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeE
Q 001674 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506 (1033)
Q Consensus 427 ~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~ 506 (1033)
+++++++++.|++|++++||||||||++|+|+++++.+...++.+++|++.+..++++|..+|+++++++|+++++..++
T Consensus 283 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34566777888999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeeccccc
Q 001674 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586 (1033)
Q Consensus 507 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 586 (1033)
..++++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++.....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~---- 438 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL---- 438 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998887754221
Q ss_pred chhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCC
Q 001674 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666 (1033)
Q Consensus 587 i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s 666 (1033)
..+...+.|+|+|||+|||++.++++|+||++.+.+
T Consensus 439 --------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 474 (919)
T PRK11107 439 --------------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS 474 (919)
T ss_pred --------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC
Confidence 112235789999999999999999999999999988
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECC
Q 001674 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746 (1033)
Q Consensus 667 ~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd~ 746 (1033)
+++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+........ .......+.|.+++++|+
T Consensus 475 ~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~ 544 (919)
T PRK11107 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEP 544 (919)
T ss_pred CCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeC
Confidence 8888899999999999999999999999999999999999999865432110 111234578899999999
Q ss_pred chhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEEecc
Q 001674 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 826 (1033)
Q Consensus 747 ~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~s 826 (1033)
++..+......+..+|+.+..+.+..+ + ....++.++++......... .......+..... .+.++++..+
T Consensus 545 ~~~~~~~l~~~L~~~g~~v~~~~~~~~-l-----~~~~~d~il~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~i~~~~~ 615 (919)
T PRK11107 545 NSAAAQATLDILSETPLEVTYSPTLSQ-L-----PEAHYDILLLGLPVTFREPL--TMLHERLAKAKSM-TDFLILALPC 615 (919)
T ss_pred CHHHHHHHHHHHHHCCCEEEEcCCHHH-h-----ccCCCCEEEecccCCCCCCH--HHHHHHHHhhhhc-CCcEEEEeCC
Confidence 999999999999999999999888776 2 23457777777655432221 1112222221111 2223333332
Q ss_pred CCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHH
Q 001674 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906 (1033)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~L 906 (1033)
......... ...+...++.||+..+.+...+............. .......+.+|||||||+.++..++.+|
T Consensus 616 ~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~vLivdd~~~~~~~l~~~L 687 (919)
T PRK11107 616 HEQVLAEQL-KQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLP-------PTDESRLPLTVMAVDDNPANLKLIGALL 687 (919)
T ss_pred cchhhHHHH-hhCCCceEECCCCCHHHHHHHHHHhhccccccccc-------ccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 222211111 22355678999999999888877654211110000 0011123468999999999999999999
Q ss_pred hhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEE
Q 001674 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 986 (1033)
Q Consensus 907 ~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIa 986 (1033)
+..|+.|.++.+|.+|++.+. .+.||+||||+.||+|||+++++.||+.. ..+++|||+
T Consensus 688 ~~~~~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~--------------------~~~~~pii~ 746 (919)
T PRK11107 688 EEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLP--------------------HNQNTPIIA 746 (919)
T ss_pred HHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcc--------------------cCCCCCEEE
Confidence 999999999999999999985 57899999999999999999999999742 134689999
Q ss_pred EccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 987 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 987 lTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
+|++...+...+|+++||++|+.||++.++|...+.++...
T Consensus 747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998754
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=5.9e-58 Score=581.47 Aligned_cols=486 Identities=29% Similarity=0.452 Sum_probs=382.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001674 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (1033)
Q Consensus 423 ~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~ 502 (1033)
++++++++++++++|++|+++|||||||||++|+|++++|.....+++++++++.+..++++|..+|+++|+++|++++.
T Consensus 433 L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~ 512 (924)
T PRK10841 433 LQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQ 512 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455567778888999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred ceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeec
Q 001674 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (1033)
Q Consensus 503 l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~ 582 (1033)
+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 513 ~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~-- 590 (924)
T PRK10841 513 LKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD-- 590 (924)
T ss_pred ceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe--
Confidence 999999999999999999999999999999999999888888899999999999999999999999999888876431
Q ss_pred ccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccc
Q 001674 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (1033)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (1033)
...+.|+|+|||+||+++.+++||+||++
T Consensus 591 ---------------------------------------------------~~~l~i~V~DtG~GI~~e~~~~lFepF~~ 619 (924)
T PRK10841 591 ---------------------------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDPFFQ 619 (924)
T ss_pred ---------------------------------------------------CCEEEEEEEEcCcCCCHHHHHHHhccccc
Confidence 12478999999999999999999999999
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEE
Q 001674 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 742 (1033)
Q Consensus 663 ~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vl 742 (1033)
.+.+.++..+|+||||+||++|+++|||+|+++|.+|+||+|+|++|+....... ........|.+++
T Consensus 620 ~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~------------~~~~~~~~g~~i~ 687 (924)
T PRK10841 620 VGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ------------KKGVEGLQGKRCW 687 (924)
T ss_pred CCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc------------cccCcccCCCEEE
Confidence 8877777778999999999999999999999999999999999999986432211 1122346788899
Q ss_pred EECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEE
Q 001674 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822 (1033)
Q Consensus 743 vvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 822 (1033)
++.+++.........++++|.++....... ....+.++.|.......... ..+.
T Consensus 688 l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~---------~~~~d~~i~d~~~~~~~~~~-----------------~~~~ 741 (924)
T PRK10841 688 LAVRNASLEQFLETLLQRSGIQVQRYEGQE---------PTPEDVLITDDPVQKKWQGR-----------------AVIT 741 (924)
T ss_pred EEcCCHHHHHHHHHHHHHCCCeEEEccccc---------CCcCcEEEEcCccccccchh-----------------hhhh
Confidence 999998888899999999999998765321 11223333332211000000 0000
Q ss_pred EeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCc-chhhccCCCCeEEEEeCCHHHHHH
Q 001674 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVNLKV 901 (1033)
Q Consensus 823 l~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ILIVDDn~~n~~v 901 (1033)
+... ..... ........+.+|.....+...+.................+. ........+.+|||||||+.++..
T Consensus 742 ~~~~----~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~ 816 (924)
T PRK10841 742 FCRR----HIGIP-LEIAPGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMMILVVDDHPINRRL 816 (924)
T ss_pred hhhc----cccCh-hhcccCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCEEEEECCCHHHHHH
Confidence 0000 00000 00001123345556666666555554332211111111110 001112245689999999999999
Q ss_pred HHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCC
Q 001674 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 981 (1033)
Q Consensus 902 l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~ 981 (1033)
+..+|++.||.|.++.||.+|++.+. .+.||+||||++||+|||++++++||+. ...
T Consensus 817 l~~~L~~~G~~v~~a~~g~eal~~l~-~~~~DlVl~D~~mP~mdG~el~~~ir~~----------------------~~~ 873 (924)
T PRK10841 817 LADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLTDVNMPNMDGYRLTQRLRQL----------------------GLT 873 (924)
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhc----------------------CCC
Confidence 99999999999999999999999985 5679999999999999999999999974 235
Q ss_pred CcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 982 VPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 982 iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
+|||++|++...+...+|+++||++|+.||++.++|...+.++...
T Consensus 874 ~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 874 LPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999987543
No 3
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-61 Score=591.83 Aligned_cols=767 Identities=33% Similarity=0.387 Sum_probs=555.2
Q ss_pred cceeeeEeeeCCCceEEeeccCCCcccHHHHHHHHHcCCceeecceeecccCCceEEEEEeeeccCCCCCCChhHHH-Hh
Q 001674 225 EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERI-EA 303 (1033)
Q Consensus 225 ~~Y~pvi~~~~~~~~~~g~D~~s~~~~~~~i~~Ar~tg~~~~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~-~~ 303 (1033)
.+|.|+++...+..+...+|...+.+.+.+...++-+...+++.++....++..+...++.++...++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999999999999999999999999999999999998887777777777777776666554444443 33
Q ss_pred hcceeeeeeeHHHHHHHHHHhhhccccEEEEeeccCCCCCceeccccccCCCCceEEeeccCCCccccccceee--eccc
Q 001674 304 TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR--FKQK 381 (1033)
Q Consensus 304 ~~G~~~~~~~v~~l~~~~l~~~~~~~~i~v~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 381 (1033)
...+-...++...+....++...........++..........+|+........+++....+..+.+.+...++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 33444555666655555555554444444445544444444456666666665666666666666666666666 3333
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHhhHHHHHHHHHHH
Q 001674 382 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 459 (1033)
Q Consensus 382 ~~~~~~~~~~~i~~lvi~~l~~~i~~~~~~r~~~~~~~~~~~~~~~~~ae~a~~aKs~--Fla~vSHELRTPLn~I~g~l 459 (1033)
..+.+.++..............+.......|...++.....+.+.....+++...+++ |+++++|||||||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 3444444444444444444445556667777777777667777777777888888888 999999999999999 888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeC
Q 001674 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 539 (1033)
Q Consensus 460 elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~ 539 (1033)
..+.++..+.+++.+....+.++..++.++|+++|.+++++|..++...+|++..+++.+++.+...+..++..+....+
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCcccccc
Q 001674 540 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619 (1033)
Q Consensus 540 ~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 619 (1033)
...|..+.+|+.+++||+.|+++||+|||..|++.++++..++......+.... ....+..+....+....+.
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~-~~e~~~~~~~~~~~~~~~~------ 394 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRA-KEEAHMAGKARIDFLQKMS------ 394 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhh-hhhhhhccchhhhHHHHhc------
Confidence 999999999999999999999999999999999999998876543222111000 0000000111000000000
Q ss_pred CCCCCCCCC---CCCCCceeEEEEEEEcCCCCChhhHhh-ccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEE
Q 001674 620 QDGSTSPFK---SSSADLINLIVSVEDTGQGIPLEAQSR-IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695 (1033)
Q Consensus 620 ~~~~~~~~~---~~~~~~~~l~i~V~DtG~GI~~e~~~~-IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~ 695 (1033)
.+...+.. ..........+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|++||++++++|+|.+.+.
T Consensus 395 -~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~ 473 (786)
T KOG0519|consen 395 -HAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDI 473 (786)
T ss_pred -cccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhh
Confidence 00000000 001112345688999999999999998 9999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHH
Q 001674 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775 (1033)
Q Consensus 696 S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l 775 (1033)
+....|++|+|++++....+......... .......+.|..+.+.+....+..+.....+.+|+.|++..+...++
T Consensus 474 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~ 549 (786)
T KOG0519|consen 474 SCISLGKTFSFTLDLLTNLPKSVVGDEKR----LFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAF 549 (786)
T ss_pred hhhccCceeeEEEEeccCCCccchhhhhh----hhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhh
Confidence 99999999999999987655433211111 12334567788777777777777777777788888888776444443
Q ss_pred HHHhcCCcc-ceEEEeeccccccCccc-hHH--HHHHHhhcCCC-CCceEEEEeccCCccccCcCCCCCCCCceeccCCc
Q 001674 776 SQIASGSKI-INMILVEQEVWEKDTSV-STL--FVNNLRKLGCG-FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 850 (1033)
Q Consensus 776 ~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~~--~~~~~~~~~~~-~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~ 850 (1033)
-........ .....++...|...... +.. +....+..... ..+..+.++.+.......+............+|..
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (786)
T KOG0519|consen 550 WFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSP 629 (786)
T ss_pred hhcccccccchheEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccchhhHHhhhcccccccccccCCccH
Confidence 332222222 34555566555333311 111 11111111110 01233333333222222222222222345556777
Q ss_pred hHHHHHHHHHHhcC-CCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCC
Q 001674 851 SSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929 (1033)
Q Consensus 851 ~s~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~ 929 (1033)
...+..+....++. +.+..............+.+.|++|||||||.+|+++++.+|+++|++++++.+|.||+++++++
T Consensus 630 s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~ 709 (786)
T KOG0519|consen 630 SLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPP 709 (786)
T ss_pred HHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCC
Confidence 77777777777654 22222222222222255677899999999999999999999999999999999999999999878
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 930 HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 930 ~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+.||+||||+|||+|||+|++++||+.+ .+++|||||||+++++..++|+++|||+||+
T Consensus 710 ~~y~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~ 768 (786)
T KOG0519|consen 710 HSYDVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVALTADADPSTEEECLEVGMDGYLS 768 (786)
T ss_pred CcccEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEEEecCCcHHHHHHHHHhCCceEEc
Confidence 9999999999999999999999999853 2689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 001674 1010 KPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 1010 KP~~~~~L~~~v~r~~~ 1026 (1033)
|||+.+.|...+.+|+.
T Consensus 769 KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 769 KPFTLEKLVKILREFLL 785 (786)
T ss_pred ccccHHHHHHHHHHHhc
Confidence 99999999999999875
No 4
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=1e-53 Score=549.11 Aligned_cols=427 Identities=34% Similarity=0.509 Sum_probs=334.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001674 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (1033)
Q Consensus 423 ~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~ 502 (1033)
+.+.+++++.++..|++|++++||||||||++|.|++++|.+...+.+++++++.+..++++|..+++++|+++|+|++.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~ 463 (921)
T PRK15347 384 LAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQ 463 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445566677788899999999999999999999999999888899999999999999999999999999999999999
Q ss_pred ceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeec
Q 001674 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (1033)
Q Consensus 503 l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~ 582 (1033)
+.++..++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||++|.|.|++...
T Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~-- 541 (921)
T PRK15347 464 MTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH-- 541 (921)
T ss_pred ccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc--
Confidence 999999999999999999999999999999999999888888899999999999999999999999999988876421
Q ss_pred ccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccc
Q 001674 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (1033)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (1033)
...+.|+|+|||+||+++.+++||+||+|
T Consensus 542 ---------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 570 (921)
T PRK15347 542 ---------------------------------------------------EQQLCFTVEDTGCGIDIQQQQQIFTPFYQ 570 (921)
T ss_pred ---------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhcCccc
Confidence 12478999999999999999999999998
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEE
Q 001674 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 742 (1033)
Q Consensus 663 ~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vl 742 (1033)
.+. ..+|+||||+||++++++|||+|.++|.+|+||+|+|++|+........ +.+..
T Consensus 571 ~~~----~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-----------------~~~~~-- 627 (921)
T PRK15347 571 ADT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-----------------LKGEL-- 627 (921)
T ss_pred CCC----CCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-----------------ccccc--
Confidence 754 3479999999999999999999999999999999999999854221100 00000
Q ss_pred EECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEE
Q 001674 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822 (1033)
Q Consensus 743 vvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 822 (1033)
.........+..+|.............
T Consensus 628 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 654 (921)
T PRK15347 628 ------SAPLALHRQLSAWGITCQPGHQNPALL----------------------------------------------- 654 (921)
T ss_pred ------cchHHHHHHHHHcCCcccccccchhhc-----------------------------------------------
Confidence 000111223344444322110000000
Q ss_pred EeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHH
Q 001674 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902 (1033)
Q Consensus 823 l~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl 902 (1033)
.+....-| ..+...+............. ..+ ....+.+||||||++.++..+
T Consensus 655 ------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~iLivdd~~~~~~~l 706 (921)
T PRK15347 655 ------------------DPELAYLP---GRLYDLLQQIIQGAPNEPVI--NLP-----LQPWQLQILLVDDVETNRDII 706 (921)
T ss_pred ------------------chhhhhcc---hHHHHHHHHHhhcCCCcccc--cCC-----CCcccCCEEEEeCCHHHHHHH
Confidence 00000000 11111111111111000000 001 012245899999999999999
Q ss_pred HHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCC
Q 001674 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 982 (1033)
Q Consensus 903 ~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~i 982 (1033)
..+|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+.+.. ..+++
T Consensus 707 ~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~------------------~~~~~ 767 (921)
T PRK15347 707 GMMLVELGQQVTTAASGTEALELGR-QHRFDLVLMDIRMPGLDGLETTQLWRDDPNN------------------LDPDC 767 (921)
T ss_pred HHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhh------------------cCCCC
Confidence 9999999999999999999999985 5789999999999999999999999974211 13478
Q ss_pred cEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 983 PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 983 PIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
|||++|+....+...+|+++||++|+.||++.++|..++.+..
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=2.2e-54 Score=545.59 Aligned_cols=371 Identities=33% Similarity=0.532 Sum_probs=322.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeE
Q 001674 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506 (1033)
Q Consensus 427 ~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~ 506 (1033)
.++++.++++|++|+++|||||||||++|.|+++++.++..+++++++++.+..++++|..+++++++++|++++++.++
T Consensus 273 e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 352 (779)
T PRK11091 273 QDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLD 352 (779)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEE
Confidence 34556667789999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeeccccc
Q 001674 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586 (1033)
Q Consensus 507 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 586 (1033)
..++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+||++.|.|.|.+....
T Consensus 353 ~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~----- 427 (779)
T PRK11091 353 NQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE----- 427 (779)
T ss_pred eeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc-----
Confidence 999999999999999999999999999999998888888999999999999999999999999998888764310
Q ss_pred chhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccccc-CC
Q 001674 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV-GP 665 (1033)
Q Consensus 587 i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~-d~ 665 (1033)
...+.|+|.|||+|||++.+++||+|||++ +.
T Consensus 428 -----------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~ 460 (779)
T PRK11091 428 -----------------------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDS 460 (779)
T ss_pred -----------------------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCC
Confidence 113789999999999999999999999998 55
Q ss_pred CCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEEC
Q 001674 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745 (1033)
Q Consensus 666 s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd 745 (1033)
+.++..+|+||||+|||++|+.|||+|+++|.+|+||+|+|++|+.........
T Consensus 461 ~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~-------------------------- 514 (779)
T PRK11091 461 HGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED-------------------------- 514 (779)
T ss_pred CCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc--------------------------
Confidence 566667899999999999999999999999999999999999997432110000
Q ss_pred CchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEEec
Q 001674 746 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825 (1033)
Q Consensus 746 ~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 825 (1033)
.+
T Consensus 515 -----------------------------------------------------------------------~~------- 516 (779)
T PRK11091 515 -----------------------------------------------------------------------AF------- 516 (779)
T ss_pred -----------------------------------------------------------------------cc-------
Confidence 00
Q ss_pred cCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHH
Q 001674 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905 (1033)
Q Consensus 826 s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~ 905 (1033)
... .....+.+||||||++.++..+..+
T Consensus 517 ----------~~~------------------------------------------~~~~~~~~ILivdD~~~~~~~l~~~ 544 (779)
T PRK11091 517 ----------DED------------------------------------------DMPLPALNILLVEDIELNVIVARSV 544 (779)
T ss_pred ----------ccc------------------------------------------cccccccceEEEcCCHHHHHHHHHH
Confidence 000 0001235799999999999999999
Q ss_pred HhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCC-CcE
Q 001674 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH-VPI 984 (1033)
Q Consensus 906 L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~-iPI 984 (1033)
|++.|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+..+ ..+ +||
T Consensus 545 L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~--------------------~~~~~~i 603 (779)
T PRK11091 545 LEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIARELRERYP--------------------REDLPPL 603 (779)
T ss_pred HHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHHHhccc--------------------cCCCCcE
Confidence 9999999999999999999985 577999999999999999999999997421 124 499
Q ss_pred EEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 985 LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 985 IalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
|++|++.... ..+|+++||++|+.||++.++|...+.+++..
T Consensus 604 i~~ta~~~~~-~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 604 VALTANVLKD-KKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEEECCchHh-HHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 9999987654 67899999999999999999999999998754
No 6
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=3.6e-54 Score=556.12 Aligned_cols=372 Identities=39% Similarity=0.630 Sum_probs=327.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 001674 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503 (1033)
Q Consensus 424 ~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l 503 (1033)
.+.+.++++++++|++|++++||||||||++|.|++++|.+..+++++++|++.+..++++|..+++++++++|+|++..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~ 530 (968)
T TIGR02956 451 AKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHL 530 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566778889999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred eeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecc
Q 001674 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583 (1033)
Q Consensus 504 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~ 583 (1033)
.++..+|++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.|||+||+|||+.|.|.|.+...++
T Consensus 531 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~- 609 (968)
T TIGR02956 531 SISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD- 609 (968)
T ss_pred eeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC-
Confidence 9999999999999999999999999999999999988888889999999999999999999999999998887753211
Q ss_pred cccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccccc
Q 001674 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (1033)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (1033)
..+.|+|+|+|+|||++.+++||+||++.
T Consensus 610 ---------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 638 (968)
T TIGR02956 610 ---------------------------------------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQA 638 (968)
T ss_pred ---------------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhcc
Confidence 01789999999999999999999999998
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEE
Q 001674 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 743 (1033)
Q Consensus 664 d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlv 743 (1033)
+ ..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+........ .
T Consensus 639 ~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~--------------~---------- 692 (968)
T TIGR02956 639 D--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED--------------S---------- 692 (968)
T ss_pred C--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc--------------c----------
Confidence 7 3455689999999999999999999999999999999999999853211000 0
Q ss_pred ECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEE
Q 001674 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823 (1033)
Q Consensus 744 vd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 823 (1033)
..
T Consensus 693 -------------------------------------------------------------------------~~----- 694 (968)
T TIGR02956 693 -------------------------------------------------------------------------AT----- 694 (968)
T ss_pred -------------------------------------------------------------------------cc-----
Confidence 00
Q ss_pred eccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHH
Q 001674 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903 (1033)
Q Consensus 824 ~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~ 903 (1033)
.. .....+.+|||||||+.++..+.
T Consensus 695 ------------~~-------------------------------------------~~~~~~~~iLvvdd~~~~~~~l~ 719 (968)
T TIGR02956 695 ------------LT-------------------------------------------VIDLPPQRVLLVEDNEVNQMVAQ 719 (968)
T ss_pred ------------cc-------------------------------------------cccccccceEEEcCcHHHHHHHH
Confidence 00 00011347999999999999999
Q ss_pred HHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCc
Q 001674 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 983 (1033)
Q Consensus 904 ~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iP 983 (1033)
.+|+..||.|.++.+|.+|++.+. .+.||+||||++||+|||+++++.||+..+ ...++|
T Consensus 720 ~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~-------------------~~~~~p 779 (968)
T TIGR02956 720 GFLTRLGHKVTLAESGQSALECFH-QHAFDLALLDINLPDGDGVTLLQQLRAIYG-------------------AKNEVK 779 (968)
T ss_pred HHHHHcCCEEEEECCHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHHHhCcc-------------------ccCCCe
Confidence 999999999999999999999995 478999999999999999999999997431 111389
Q ss_pred EEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 984 ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 984 IIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
||++|++...+...+|+++||++|+.||++.++|...+.+++.
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999874
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=1.9e-52 Score=537.04 Aligned_cols=371 Identities=33% Similarity=0.543 Sum_probs=323.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001674 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 421 ~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
.+..+.+.+.+++.++|++|++++||||||||++|.|++++|.+...++.++++++.+..++++|..++++++++++++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~ 507 (914)
T PRK11466 428 IEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEA 507 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566778888899999999999999999999999999998888888999999999999999999999999999998
Q ss_pred CC--ceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Q 001674 501 GK--LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 578 (1033)
Q Consensus 501 g~--l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~ 578 (1033)
|. +.++.++|++.+++++++..+...+..|++.+.+++++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+.
T Consensus 508 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~ 587 (914)
T PRK11466 508 GGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSR 587 (914)
T ss_pred CCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 84 5677789999999999999999999999999999998888888999999999999999999999999998888764
Q ss_pred EeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccC
Q 001674 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658 (1033)
Q Consensus 579 ~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe 658 (1033)
.. ...+.|.|+|||+|||++.++++|+
T Consensus 588 ~~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~ 614 (914)
T PRK11466 588 TD-----------------------------------------------------GEQWLVEVEDSGCGIDPAKLAEIFQ 614 (914)
T ss_pred Ec-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHHhc
Confidence 21 1246799999999999999999999
Q ss_pred cccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCC
Q 001674 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQG 738 (1033)
Q Consensus 659 pF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 738 (1033)
||++.+. ..+|+||||+|||++++.|||+|.++|.+++||+|+|++|+........ .
T Consensus 615 ~f~~~~~----~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~---------------~---- 671 (914)
T PRK11466 615 PFVQVSG----KRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP---------------K---- 671 (914)
T ss_pred hhhcCCC----CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccc---------------c----
Confidence 9998632 3579999999999999999999999999999999999999742110000 0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+
T Consensus 672 ------------------------------------------------------------------------------~~ 673 (914)
T PRK11466 672 ------------------------------------------------------------------------------TV 673 (914)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHH
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n 898 (1033)
.. .....+++|||||||+.+
T Consensus 674 -----------------~~-------------------------------------------~~~~~~~~vLivdD~~~~ 693 (914)
T PRK11466 674 -----------------NQ-------------------------------------------AVRLDGLRLLLIEDNPLT 693 (914)
T ss_pred -----------------cc-------------------------------------------ccccCCcceEEEeCCHHH
Confidence 00 000124589999999999
Q ss_pred HHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccC
Q 001674 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 978 (1033)
Q Consensus 899 ~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~ 978 (1033)
+..+..+|+..|+.|.++.+|.+|++.+...++||+||||++||+|||++++++||+.
T Consensus 694 ~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~---------------------- 751 (914)
T PRK11466 694 QRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ---------------------- 751 (914)
T ss_pred HHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhh----------------------
Confidence 9999999999999999999999999987544679999999999999999999999973
Q ss_pred CCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 979 NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 979 ~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|++...+...+|+++|+++|+.||++.++|...|.+++..
T Consensus 752 ~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 752 YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 2468999999999999999999999999999999999999999988753
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=3.5e-48 Score=510.47 Aligned_cols=383 Identities=31% Similarity=0.480 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001674 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT-QQDYVRTAQASGKALVSLINEVLDQ 495 (1033)
Q Consensus 417 ~~~~~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~-q~~~l~~i~~s~~~L~~LIndlLd~ 495 (1033)
++..+.+++.+++++++..++.+|++++||||||||++|.|++++|.+...+.+ ..++++.+..++++|..++++++++
T Consensus 692 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~ 771 (1197)
T PRK09959 692 RDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDV 771 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666777778899999999999999999999999999976655544 4578899999999999999999999
Q ss_pred HHhhcCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEE
Q 001674 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575 (1033)
Q Consensus 496 skiesg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v 575 (1033)
++++++...+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|+||+.||++||+||++.|.+.+
T Consensus 772 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i 851 (1197)
T PRK09959 772 DKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKI 851 (1197)
T ss_pred HHhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999999999999999999999999999999999887654333446889999999999999999999999998777
Q ss_pred EEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhh
Q 001674 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655 (1033)
Q Consensus 576 ~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~ 655 (1033)
.+..... ..+...+.|+|.|+|+|||++.+++
T Consensus 852 ~~~~~~~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~ 883 (1197)
T PRK09959 852 TTSLGHI------------------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQ 883 (1197)
T ss_pred EEEEeee------------------------------------------------cCCceEEEEEEEEcCCCCCHHHHHH
Confidence 6543110 0112347799999999999999999
Q ss_pred ccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 001674 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735 (1033)
Q Consensus 656 IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1033)
||+||++.+. .+..+|+||||+|||+|++.|||+|+++|.+|+||+|++++|+.........
T Consensus 884 iF~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~---------------- 945 (1197)
T PRK09959 884 LFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATV---------------- 945 (1197)
T ss_pred hhcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhccc----------------
Confidence 9999998644 2345799999999999999999999999999999999999997421100000
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 736 ~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
T Consensus 946 -------------------------------------------------------------------------------- 945 (1197)
T PRK09959 946 -------------------------------------------------------------------------------- 945 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCC
Q 001674 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn 895 (1033)
.+ ... .|. ....+.+||||||+
T Consensus 946 -~~-----------------~~~--------~~~--------------------------------~~~~~~~iLivdd~ 967 (1197)
T PRK09959 946 -EA-----------------KAE--------QPI--------------------------------TLPEKLSILIADDH 967 (1197)
T ss_pred -cc-----------------ccc--------ccc--------------------------------ccccCceEEEcCCC
Confidence 00 000 000 00113479999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhc
Q 001674 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 975 (1033)
Q Consensus 896 ~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~ 975 (1033)
+.++..+..+|+..|+.+.++.++.+|++.+. .+.||+||+|++||+|||++++++||+.
T Consensus 968 ~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i~~~------------------- 1027 (1197)
T PRK09959 968 PTNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKLREQ------------------- 1027 (1197)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc-------------------
Confidence 99999999999999999999999999999985 5789999999999999999999999963
Q ss_pred ccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 976 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 976 ~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+....+...+|+++|+++|+.||++.++|...|.++..
T Consensus 1028 ---~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1028 ---NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred ---CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 236899999999999999999999999999999999999999987643
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=3.2e-45 Score=459.24 Aligned_cols=240 Identities=20% Similarity=0.321 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001674 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 421 ~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
+++.+++++++++.++|++|+++|||||||||++|.|+++++.+...+++++++++.+..++++|..+|+++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666777888889999999999999999999999999999988777888899999999999999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe
Q 001674 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~ 580 (1033)
|+..++..+|++.+++++++..+...+..|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999888766677889999999999999999999999999988877532
Q ss_pred ecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcc
Q 001674 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (1033)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (1033)
.. ....+.|+|.|||+|||++.+++||+||
T Consensus 594 ~~--------------------------------------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF 623 (894)
T PRK10618 594 ES--------------------------------------------------SPDRLTIRILDTGAGVSIKELDNLHFPF 623 (894)
T ss_pred cC--------------------------------------------------CCcEEEEEEEECCCCCCHHHHHHhcCcc
Confidence 11 1135789999999999999999999999
Q ss_pred cccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 661 ~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
++.+. ..+..+|+||||+|||+||++|||+|+++|.+|+||+|+|++|+.
T Consensus 624 ~t~~~-~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 624 LNQTQ-GDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred ccCCC-CCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 98643 234557999999999999999999999999999999999999973
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=5.4e-43 Score=443.48 Aligned_cols=363 Identities=19% Similarity=0.277 Sum_probs=291.4
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT-ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~-~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
+..+|++++||||||||++|.|+++++.+. ..+...+++++.+..+++++..++++++++++...+. ..++++.+
T Consensus 449 ~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~----~~~~~l~~ 524 (828)
T PRK13837 449 AVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGERN----TKPFDLSE 524 (828)
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CcEEcHHH
Confidence 567899999999999999999999987653 2345668899999999999999999999999965543 46799999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeecccccchhhhhh
Q 001674 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++ .|.|.|++.........
T Consensus 525 ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~------- 595 (828)
T PRK13837 525 LVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPK------- 595 (828)
T ss_pred HHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccccc-------
Confidence 999999988754 45788888877654 446899999999999999999999985 46777776543110000
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001674 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
.. ......+...+.|+|+|+|+|||++.+++||+||++.+. +|
T Consensus 596 -----~~--------------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G 638 (828)
T PRK13837 596 -----VL--------------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GG 638 (828)
T ss_pred -----cc--------------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CC
Confidence 00 000011234688999999999999999999999997432 79
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchhhHHH
Q 001674 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKV 753 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd~~~~~~~v 753 (1033)
+||||+|||++++.|||+|+++|.+|+||+|+|++|......... ..
T Consensus 639 ~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~-----------~~---------------------- 685 (828)
T PRK13837 639 TGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAP-----------QA---------------------- 685 (828)
T ss_pred CcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCc-----------cc----------------------
Confidence 999999999999999999999999999999999999743111000 00
Q ss_pred HHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEEeccCCccccC
Q 001674 754 SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833 (1033)
Q Consensus 754 ~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~s~~~~~~~ 833 (1033)
T Consensus 686 -------------------------------------------------------------------------------- 685 (828)
T PRK13837 686 -------------------------------------------------------------------------------- 685 (828)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhhCCCEE
Q 001674 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 913 (1033)
Q Consensus 834 ~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v 913 (1033)
... |. . .....+.+|||||||+.++..+...|...||.+
T Consensus 686 -~~~----------~~------------------------~------~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v 724 (828)
T PRK13837 686 -FFG----------PG------------------------P------LPRGRGETVLLVEPDDATLERYEEKLAALGYEP 724 (828)
T ss_pred -cCC----------Cc------------------------c------cCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEE
Confidence 000 00 0 001124589999999999999999999999999
Q ss_pred EEEeChHHHHHHhCCC-CCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCc
Q 001674 914 VCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 992 (1033)
Q Consensus 914 ~~a~~g~eAl~~l~~~-~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~ 992 (1033)
+.+.++.+|++.+... ..||+|++ .||.|+|+++++.|+.. .+.+|||++|+...
T Consensus 725 ~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~----------------------~~~ipIIvls~~~~ 780 (828)
T PRK13837 725 VGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAA----------------------APTLPIILGGNSKT 780 (828)
T ss_pred EEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhh----------------------CCCCCEEEEeCCCc
Confidence 9999999999988432 34899999 79999999999999863 34689999999999
Q ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 993 QATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 993 ~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.....+++++| ++|+.||++.++|..+|.+++..
T Consensus 781 ~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 781 MALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred hhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 99999999999 99999999999999999998764
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-41 Score=357.02 Aligned_cols=227 Identities=27% Similarity=0.474 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEee
Q 001674 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT--QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (1033)
Q Consensus 433 a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~--q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~ 510 (1033)
.++.+..|.|++||||||||+++.+++|.|.+....+. ...++..-+...++|.+||||||.+||++....+++.+-+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34456789999999999999999999999988766444 5789999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhccCcE-EEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccch
Q 001674 511 NLRAILDDVLSLFSGKSQDKGVE-LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIE 588 (1033)
Q Consensus 511 dL~~ll~~v~~~~~~~a~~k~i~-l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~ 588 (1033)
|+...+.+++..|.....+..+. +.-.+ +.-+.++..|+.++.||+.|+++||+||+|. |.|++.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998775544443 32233 3446788899999999999999999999987 4676665421
Q ss_pred hhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC
Q 001674 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (1033)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s 668 (1033)
..++.|+|.|.|.|||.+++++||++||++|..++
T Consensus 372 ---------------------------------------------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARs 406 (459)
T COG5002 372 ---------------------------------------------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARS 406 (459)
T ss_pred ---------------------------------------------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhh
Confidence 12578999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 001674 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (1033)
Q Consensus 669 ~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (1033)
|..|||||||+|+|.+|+.|||.||.+|+.|+||+|+|+||+...
T Consensus 407 R~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 407 RKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred hcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccCc
Confidence 999999999999999999999999999999999999999998643
No 12
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=1e-36 Score=367.48 Aligned_cols=369 Identities=20% Similarity=0.240 Sum_probs=285.6
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEee
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-----LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~-----l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~ 510 (1033)
...++++.++||+||||+.|.++++++.... ......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3457899999999999999999999875321 223456788899999999999999999998753 3445678
Q ss_pred cHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEEeecccccchh
Q 001674 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEV 589 (1033)
Q Consensus 511 dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~i 589 (1033)
++..+++.+...+.. ...+++.+.+.+++..+ .+.+|+.++.||+.||++||+||++.| .|.|.+........
T Consensus 238 ~l~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAER-TLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHHH-hcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 999999988776653 34577888777666554 477899999999999999999999654 44444321110000
Q ss_pred hhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCC
Q 001674 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (1033)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~ 669 (1033)
. ...| ....+...+.|+|.|+|+|||++.++++|+||++.+.
T Consensus 312 -------~-----------~~~~----------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 312 -------D-----------LAMY----------------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred -------c-----------cccc----------------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 0 0000 0011223578999999999999999999999997542
Q ss_pred CCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchh
Q 001674 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 749 (1033)
Q Consensus 670 ~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd~~~~ 749 (1033)
..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|......... +
T Consensus 354 ~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~--------------~---------------- 403 (540)
T PRK13557 354 EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE--------------Q---------------- 403 (540)
T ss_pred CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC--------------C----------------
Confidence 3469999999999999999999999999999999999998732110000 0
Q ss_pred hHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEEeccCCc
Q 001674 750 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829 (1033)
Q Consensus 750 ~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~s~~~ 829 (1033)
.
T Consensus 404 -------------------------------------------------------------------------------~ 404 (540)
T PRK13557 404 -------------------------------------------------------------------------------E 404 (540)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred cccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhhC
Q 001674 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 909 (1033)
Q Consensus 830 ~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~L~~~ 909 (1033)
.... ......+++||||||++..+..+..+|+..
T Consensus 405 -----~~~~-----------------------------------------~~~~~~~~~iliv~~~~~~~~~l~~~l~~~ 438 (540)
T PRK13557 405 -----PKAR-----------------------------------------AIDRGGTETILIVDDRPDVAELARMILEDF 438 (540)
T ss_pred -----CCCc-----------------------------------------ccccCCCceEEEEcCcHHHHHHHHHHHHhc
Confidence 0000 000112458999999999999999999999
Q ss_pred CCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCC-CCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEc
Q 001674 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 988 (1033)
Q Consensus 910 g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalT 988 (1033)
|+.+..+.++.+|++.+.....||+|++|..||+ ++|+++++.||+. .+.+|||++|
T Consensus 439 ~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~----------------------~~~~~ii~~~ 496 (540)
T PRK13557 439 GYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRR----------------------QPKIKVLLTT 496 (540)
T ss_pred CCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHh----------------------CCCCcEEEEc
Confidence 9999999999999998853346999999999997 9999999999973 2358999999
Q ss_pred cCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCCCC
Q 001674 989 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 1029 (1033)
Q Consensus 989 a~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~~~ 1029 (1033)
..........++.+|+++|+.||++.++|...+.+......
T Consensus 497 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 537 (540)
T PRK13557 497 GYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGPT 537 (540)
T ss_pred CCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCCC
Confidence 99988888889999999999999999999999999876543
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=3.6e-36 Score=348.73 Aligned_cols=243 Identities=26% Similarity=0.383 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHH
Q 001674 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-------VTQQDYVRTAQASGKALV 486 (1033)
Q Consensus 414 ~~~~~~~~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~-------~~q~~~l~~i~~s~~~L~ 486 (1033)
.++.+....+.+.++++++..+++.+|++++||||||||++|.+++++|.+...+ +..+++++.+..+.++|.
T Consensus 128 ~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (380)
T PRK09303 128 LQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIE 207 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666777899999999999999999999999999754332 235778899999999999
Q ss_pred HHHHHHHHHHHhhcCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHh
Q 001674 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566 (1033)
Q Consensus 487 ~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiK 566 (1033)
.++++++++++.+.+...++..++|+.+++++++..+...+..+++.+.+++++..| .+.+|+.+|+||+.||++||+|
T Consensus 208 ~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik 286 (380)
T PRK09303 208 RLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIK 286 (380)
T ss_pred HHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999877765 5889999999999999999999
Q ss_pred ccCC-CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcC
Q 001674 567 FTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645 (1033)
Q Consensus 567 fT~~-G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 645 (1033)
|++. |.|.+.+... +...+.|+|.|+|
T Consensus 287 ~~~~~~~I~i~~~~~----------------------------------------------------~~~~v~i~V~D~G 314 (380)
T PRK09303 287 YTPEGGTITLSMLHR----------------------------------------------------TTQKVQVSICDTG 314 (380)
T ss_pred cCCCCceEEEEEEec----------------------------------------------------CCCEEEEEEEEcC
Confidence 9976 4555544210 1124789999999
Q ss_pred CCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 646 ~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
+|||++.+++||+|||+.+. ++..+|+||||+|||++++.|||+|+++|.+++||+|+|++|..
T Consensus 315 ~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 315 PGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 99999999999999998765 34567999999999999999999999999999999999999974
No 14
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-36 Score=355.17 Aligned_cols=225 Identities=24% Similarity=0.425 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEe
Q 001674 431 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVT-QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507 (1033)
Q Consensus 431 e~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~--~l~~~-q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~ 507 (1033)
.+.++.++.|++++||||||||++|.|.++.|... .++++ +.+.+..|.+.+++|.++|++|||++|+++|.+.++.
T Consensus 654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~ 733 (890)
T COG2205 654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKL 733 (890)
T ss_pred HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccc
Confidence 34567889999999999999999999999998754 34444 7889999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCe-EEEEEEEeeccccc
Q 001674 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLVEEVVDS 586 (1033)
Q Consensus 508 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~ 586 (1033)
.+..+.+++.+++.........+. +.+.+++++| .+..|...|.|||.|||+||+||++.|. |.|.+...
T Consensus 734 ~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~------ 804 (890)
T COG2205 734 DWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE------ 804 (890)
T ss_pred chhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe------
Confidence 999999999999988776655554 5566677766 5889999999999999999999998875 77766432
Q ss_pred chhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCC
Q 001674 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666 (1033)
Q Consensus 587 i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s 666 (1033)
..+++|+|.|+|+|||++++++||++||+.++.
T Consensus 805 -----------------------------------------------~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~ 837 (890)
T COG2205 805 -----------------------------------------------RENVVFSVIDEGPGIPEGELERIFDKFYRGNKE 837 (890)
T ss_pred -----------------------------------------------cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC
Confidence 135789999999999999999999999998763
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 001674 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (1033)
Q Consensus 667 ~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (1033)
.. ..|+|||||||+.||+.|||+|++.+.+++|++|+|++|....
T Consensus 838 ~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 838 SA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred CC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 33 6799999999999999999999999999999999999998643
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=5.5e-33 Score=327.40 Aligned_cols=221 Identities=26% Similarity=0.382 Sum_probs=189.8
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHH
Q 001674 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (1033)
Q Consensus 435 ~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~ 513 (1033)
+++.+|++++||||||||++|.|+++++.+... ++...++++.+.+++++|..++++++++++++.+........+++.
T Consensus 202 ~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~ 281 (430)
T PRK11006 202 GARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVP 281 (430)
T ss_pred HHHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHH
Confidence 356689999999999999999999999876543 3456778999999999999999999999999998877667789999
Q ss_pred HHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEEeecccccchhhhh
Q 001674 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 514 ~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
.+++.+...+...+ .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 282 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------ 346 (430)
T PRK11006 282 MMLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------ 346 (430)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc------------
Confidence 99988877776555 67788888776553 578999999999999999999999764 465554311
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001674 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
...+.|+|+|+|+|||++.++++|+|||+.+.+.++..+
T Consensus 347 -----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 385 (430)
T PRK11006 347 -----------------------------------------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTG 385 (430)
T ss_pred -----------------------------------------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCC
Confidence 123679999999999999999999999998877777778
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
|+||||+|||++++.|||+|.++|.+++||+|+|++|..
T Consensus 386 G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 386 GSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 999999999999999999999999999999999999863
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=8.8e-32 Score=317.52 Aligned_cols=229 Identities=25% Similarity=0.374 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001674 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (1033)
Q Consensus 422 ~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg 501 (1033)
.++++.++.++..+.+.+|++++||||||||+.|.+.++++.+. +..+. +.+.+..++|..++++++.++|++.+
T Consensus 197 ~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~ 271 (433)
T PRK10604 197 AFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARLDRP 271 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455556666677788999999999999999999999988632 22222 23778889999999999999999999
Q ss_pred CceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEee
Q 001674 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 581 (1033)
Q Consensus 502 ~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~ 581 (1033)
...+..+++++.+++++++..+......+++++.+..+ +..+.+|+..+.+|+.||++||+||++ |.|.|++...+
T Consensus 272 ~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~ 347 (433)
T PRK10604 272 QNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG 347 (433)
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC
Confidence 99888899999999999999998888888777765322 335678999999999999999999995 77777764321
Q ss_pred cccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccc
Q 001674 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (1033)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (1033)
..+.|+|+|+|+|||++.+++||+|||
T Consensus 348 -----------------------------------------------------~~~~I~V~D~G~Gi~~e~~~~if~~f~ 374 (433)
T PRK10604 348 -----------------------------------------------------NQACLIVEDDGPGIPPEERERVFEPFV 374 (433)
T ss_pred -----------------------------------------------------CEEEEEEEEcCCCCCHHHHhhcCCCCc
Confidence 136799999999999999999999999
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 662 q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+.+.++++..+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 375 r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 375 RLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred cCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 998887777789999999999999999999999999999999999999754
No 17
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=1.1e-30 Score=311.98 Aligned_cols=222 Identities=20% Similarity=0.280 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeE
Q 001674 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508 (1033)
Q Consensus 429 ~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~ 508 (1033)
+.++..+...+|++++||||||||++|.++++.|.+.... ...+....+.+...++..+++++++.++.+++...+..+
T Consensus 258 ~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~-~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~ 336 (485)
T PRK10815 258 NERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM-SVEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRE 336 (485)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Confidence 3344445557899999999999999999999988765421 223344567778889999999999999999998888888
Q ss_pred eecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccch
Q 001674 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588 (1033)
Q Consensus 509 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~ 588 (1033)
.+++..+++++++.+...+..+++++.+.+++.. .+.+|+..|.||+.||++||+||+.+ .|.|++...
T Consensus 337 ~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~-------- 405 (485)
T PRK10815 337 LHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT-------- 405 (485)
T ss_pred eecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe--------
Confidence 9999999999999999999999999998876543 57799999999999999999999965 355544321
Q ss_pred hhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC
Q 001674 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (1033)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s 668 (1033)
...+.|+|+|+|+|||++.++++|+||++.+.+
T Consensus 406 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~-- 438 (485)
T PRK10815 406 ---------------------------------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADTL-- 438 (485)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--
Confidence 124679999999999999999999999986532
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 669 ~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
.+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 439 --~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 439 --RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred --CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 35999999999999999999999999999999999999864
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.98 E-value=6.5e-31 Score=312.44 Aligned_cols=211 Identities=21% Similarity=0.341 Sum_probs=166.4
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHH
Q 001674 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELD---VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (1033)
Q Consensus 437 Ks~Fla~vSHELRTPLn~I~g~lelL~~~~l~---~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~ 513 (1033)
..++++.++|||||||++|.|+++++.+...+ ....+.+..+...+..++..++++++ ........++|+.
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~dl~ 349 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVNLN 349 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCcccccccccHH
Confidence 45678889999999999999999998765333 23334444444444444444444432 2334445789999
Q ss_pred HHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCe-----EEEEEEEeecccccch
Q 001674 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-----IFVTVYLVEEVVDSIE 588 (1033)
Q Consensus 514 ~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-----I~v~v~~~~~~~~~i~ 588 (1033)
.++++++..+...+..+++.+.+..++..| .+.+|+.+|+|||.||++||+||++.|. |.+.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--------- 419 (494)
T TIGR02938 350 QILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL--------- 419 (494)
T ss_pred HHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe---------
Confidence 999999999999999999999988877666 5789999999999999999999996652 3332211
Q ss_pred hhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC
Q 001674 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (1033)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s 668 (1033)
+...+.|+|+|||+|||++.+++||+||++.+..
T Consensus 420 --------------------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~-- 453 (494)
T TIGR02938 420 --------------------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG-- 453 (494)
T ss_pred --------------------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC--
Confidence 1124689999999999999999999999987543
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 669 ~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
..+||||||+|||.||++|||+|+++|.+++||+|+|++|+
T Consensus 454 -~~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 454 -SRKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred -CCCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 26799999999999999999999999999999999999985
No 19
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.98 E-value=3.9e-30 Score=305.53 Aligned_cols=236 Identities=25% Similarity=0.421 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001674 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 421 ~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
+.++++..+++.....+.+|++.+|||+||||+.+.+.++.+.+.... ...+.+..+...+++|..++++++++++.+.
T Consensus 224 ~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~-~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~ 302 (466)
T PRK10549 224 QDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK-FTPESVASLQAEVGTLTKLVDDLHQLSLSDE 302 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344555666667777788999999999999999999999998765322 2345678888899999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEE
Q 001674 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~ 579 (1033)
+...+...++++.+++++++..+......+++++.+++++.. .+.+|+.++.|++.||++||+||++. |.|.|.+..
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~ 380 (466)
T PRK10549 303 GALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ 380 (466)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 999999999999999999999999999999999998876543 46799999999999999999999965 566666532
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001674 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
. ...+.|+|+|+|+|||++.++++|+|
T Consensus 381 ~-----------------------------------------------------~~~~~i~V~D~G~Gi~~e~~~~lf~~ 407 (466)
T PRK10549 381 R-----------------------------------------------------DKTLRLTFADSAPGVSDEQLQKLFER 407 (466)
T ss_pred c-----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhccC
Confidence 1 12478999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
||+.+.+..+..+|+||||+||+++++.|||++.++|.+++||+|+|.+|+..
T Consensus 408 ~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 408 FYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred cccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 99988776667789999999999999999999999999999999999999854
No 20
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=6e-30 Score=324.49 Aligned_cols=223 Identities=22% Similarity=0.356 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEe
Q 001674 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL--DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 509 (1033)
Q Consensus 432 ~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l--~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~ 509 (1033)
+.++.|.+|++.+||||||||++|.|+++++..... .....++++.+.+.+.++..++++++++++++++...++..+
T Consensus 659 e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~ 738 (895)
T PRK10490 659 EREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEW 738 (895)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Confidence 345667899999999999999999999998764321 223346788899999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEEeecccccch
Q 001674 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 588 (1033)
Q Consensus 510 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~ 588 (1033)
+++.+++++++..+......+++.+. +++..| .+.+|+.+|.||+.||++||+||++.| .|.|++...
T Consensus 739 ~~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~-------- 807 (895)
T PRK10490 739 LTLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE-------- 807 (895)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe--------
Confidence 99999999999999888777766654 455544 588999999999999999999999765 566654321
Q ss_pred hhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC
Q 001674 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (1033)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s 668 (1033)
...+.|+|+|+|+|||++.+++||+||++.+..
T Consensus 808 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~-- 840 (895)
T PRK10490 808 ---------------------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE-- 840 (895)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--
Confidence 124789999999999999999999999986542
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 669 ~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 841 ~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 841 SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 34569999999999999999999999999999999999999853
No 21
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=3.2e-29 Score=287.71 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001674 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (1033)
Q Consensus 422 ~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg 501 (1033)
.+.++.++.+...+.+.+|++++||||||||++|.+.++++.+... . ..+.+....+++..++++++++++.+..
T Consensus 122 ~~n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~ 196 (356)
T PRK10755 122 ALNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQS 196 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3444455555556666789999999999999999999998765422 1 2344555677899999999999998876
Q ss_pred CceeEeEeecH-HHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEE
Q 001674 502 KLELEAVSFNL-RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579 (1033)
Q Consensus 502 ~l~l~~~~~dL-~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~ 579 (1033)
.......++++ .+++..++..+...+..+++.+.+...+ .+..+.+|+..+++|+.||++||+||+++ |.|.|++..
T Consensus 197 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~ 275 (356)
T PRK10755 197 FSSGHYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQ 275 (356)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 66666667888 9999999888988888898888774222 34568899999999999999999999965 456665532
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001674 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
. ...+.|+|+|+|+||+++.++++|+|
T Consensus 276 ~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~ 302 (356)
T PRK10755 276 E-----------------------------------------------------DGGAVLAVEDEGPGIDESKCGELSKA 302 (356)
T ss_pred c-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHhCCC
Confidence 1 12468999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEEeC
Q 001674 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 711 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g-~GStF~~~lp~~ 711 (1033)
|++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++++|..
T Consensus 303 f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 303 FVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred eEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 998643 346999999999999999999999999998 999999999863
No 22
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=3.9e-29 Score=297.00 Aligned_cols=213 Identities=26% Similarity=0.432 Sum_probs=182.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~-l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
+..+|.+++||||||||++|.|+++++.+.. .+.+.+++++.+....+++..++++++++++.. ..+..++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567999999999999999999999987643 334567788999999999999999999999843 34556899999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhhh
Q 001674 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
++++++..+...+.++++.+.+..++..+ .+.+|+.+|.|++.||++||+||+.. |.|.|++...
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~------------- 377 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES------------- 377 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-------------
Confidence 99999999999999999999998876554 57789999999999999999999754 5666665321
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001674 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
...+.|+|+|+|+|||++.++++|+||++.+ .+|
T Consensus 378 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k------~~g 411 (457)
T PRK10364 378 ----------------------------------------GAGVKISVTDSGKGIAADQLEAIFTPYFTTK------AEG 411 (457)
T ss_pred ----------------------------------------CCeEEEEEEECCCCCCHHHHHHHhCccccCC------CCC
Confidence 1137899999999999999999999998632 368
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+||||+|||++++.|||+|+++|.+++||+|++++|...
T Consensus 412 ~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 412 TGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred CcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 999999999999999999999999999999999999853
No 23
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=8.1e-29 Score=295.36 Aligned_cols=232 Identities=26% Similarity=0.425 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001674 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 422 ~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
.++++.++.++....+.+|++.+|||||||++.|.+.++.+..... ..+..+.+..+.....++..++++++++++.+.
T Consensus 247 ~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~ 326 (482)
T PRK09835 247 SFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADN 326 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556666666778899999999999999999999998765433 334456777778888999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEE
Q 001674 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 579 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~ 579 (1033)
+.......++++.++++++...+...+..+++.+.+..+ +..+.+|+.+|+||+.||++||+||++.| .|.|++..
T Consensus 327 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~ 403 (482)
T PRK09835 327 NQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQE 403 (482)
T ss_pred CCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 988888889999999999999999988899988876532 34688999999999999999999999765 46666532
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001674 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
.+ ..+.|+|+|+|+|||++.++++|+|
T Consensus 404 ~~-----------------------------------------------------~~~~i~v~d~G~gi~~~~~~~if~~ 430 (482)
T PRK09835 404 VD-----------------------------------------------------HQVQLVVENPGTPIAPEHLPRLFDR 430 (482)
T ss_pred eC-----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCC
Confidence 11 1367999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
||+.+.+.++..+|+||||+||+++++.|||+|+++|.+ .|++|++++|.
T Consensus 431 f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 431 FYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred cccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 999987766666899999999999999999999999975 69999999985
No 24
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=8.1e-29 Score=307.37 Aligned_cols=230 Identities=20% Similarity=0.314 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 001674 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503 (1033)
Q Consensus 424 ~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l 503 (1033)
+++..++++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+..++++|..++++++++++++.+..
T Consensus 472 n~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~ 551 (703)
T TIGR03785 472 AQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQ 551 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34445566666667789999999999999999999999887777777888999999999999999999999999999888
Q ss_pred eeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeec
Q 001674 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEE 582 (1033)
Q Consensus 504 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~ 582 (1033)
..+.+++|+.+++++++..+......+++.+.+..+ +..+.+|+..|.||+.||++||+||++. |.|.|++...
T Consensus 552 ~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~~---~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~-- 626 (703)
T TIGR03785 552 SAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPET---PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN-- 626 (703)
T ss_pred cccceeecHHHHHHHHHHHHHHHhhcCCEEEEecCC---CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc--
Confidence 888899999999999999999888888877765432 3368899999999999999999999965 4555554321
Q ss_pred ccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccc
Q 001674 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (1033)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (1033)
...+.|+|+|+|+||+++.+++||+||++
T Consensus 627 ---------------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~t 655 (703)
T TIGR03785 627 ---------------------------------------------------KSHALLTVSNEGPPLPEDMGEQLFDSMVS 655 (703)
T ss_pred ---------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCee
Confidence 12467999999999999999999999998
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEE
Q 001674 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 709 (1033)
Q Consensus 663 ~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g-~GStF~~~lp 709 (1033)
.+.......+|+||||+|||++++.|||+|.++|.++ .|++|++++|
T Consensus 656 ~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 656 VRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred cCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 7655555556899999999999999999999999975 8999999987
No 25
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=7.1e-29 Score=293.25 Aligned_cols=230 Identities=29% Similarity=0.447 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001674 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 422 ~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
.+.++.+++++......+|.+.+||||||||+.+.+.++.+.....+ .+..++++.+.....++..++++++++++++.
T Consensus 226 ~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 305 (457)
T TIGR01386 226 SFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADN 305 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555666666667899999999999999999999987654333 34467788888889999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEE
Q 001674 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~ 579 (1033)
.....+..++++.++++++++.+...+.++++++.+.. . ..+.+|+..|.+++.||++||+||++. |.|.|++..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~ 381 (457)
T TIGR01386 306 GQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIER 381 (457)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEe
Confidence 98888889999999999999999988889998876643 2 468899999999999999999999965 567666532
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001674 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
. ...+.|+|+|+|+|||++.++++|+|
T Consensus 382 ~-----------------------------------------------------~~~~~i~v~D~G~g~~~~~~~~~~~~ 408 (457)
T TIGR01386 382 R-----------------------------------------------------SDEVRVSVSNPGPGIPPEHLSRLFDR 408 (457)
T ss_pred c-----------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhccc
Confidence 1 12468999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 001674 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp 709 (1033)
||+.+.++++..+|+||||+||+++++.|||+|.+++ +++|++|++++|
T Consensus 409 ~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 409 FYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred cccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 9999887766778999999999999999999999999 999999999987
No 26
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=2.2e-28 Score=289.70 Aligned_cols=232 Identities=23% Similarity=0.385 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001674 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (1033)
Q Consensus 422 ~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg 501 (1033)
.+..+.+++++....+.+|++++||||||||++|.+.++++.....+. ..+..+....++|..++++++++++.+..
T Consensus 228 ~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~ 304 (461)
T PRK09470 228 SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQK 304 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555566666777788999999999999999999999876543322 24667888999999999999999998765
Q ss_pred CceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEee
Q 001674 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 581 (1033)
Q Consensus 502 ~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~ 581 (1033)
. .+..+.+++.+++++++..+...+..+++.+.+...+. +..+.+|+..|.+++.||++||+||++ +.|.|+++..+
T Consensus 305 ~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~~ 381 (461)
T PRK09470 305 N-HLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVDK 381 (461)
T ss_pred c-ccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEEC
Confidence 4 56777899999999999998888888899888874333 457889999999999999999999996 55666654211
Q ss_pred cccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccc
Q 001674 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (1033)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (1033)
..+.|+|+|+|+||+++.++++|+|||
T Consensus 382 -----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~ 408 (461)
T PRK09470 382 -----------------------------------------------------DGLTITVDDDGPGVPEEEREQIFRPFY 408 (461)
T ss_pred -----------------------------------------------------CEEEEEEEECCCCCCHHHHHHhcCCCc
Confidence 136799999999999999999999999
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 662 q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+.+...++..+|+||||+||+++++.|||++.+.|.++.||+|++++|+..
T Consensus 409 ~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 409 RVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred cCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 988777777789999999999999999999999999999999999999753
No 27
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-29 Score=287.88 Aligned_cols=236 Identities=25% Similarity=0.400 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001674 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQA 496 (1033)
Q Consensus 420 ~~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~---~l~~~q~~~l~~i~~s~~~L~~LIndlLd~s 496 (1033)
..++.+++.++|+++....+|...+||++|.||+.|.+++++|... .++.+.++++..+.+....+.+||++++.++
T Consensus 507 aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s 586 (750)
T COG4251 507 AEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYS 586 (750)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456677788899999999999999999999999999999999754 5788899999999999999999999999999
Q ss_pred HhhcCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEE
Q 001674 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 576 (1033)
Q Consensus 497 kiesg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~ 576 (1033)
++..-...+. +.|+.+++++++........+.++++.+. + +| .+.+|+.++.|++.||+.|||||..++.-.|.
T Consensus 587 ~l~~~~~~l~--~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~ 660 (750)
T COG4251 587 KLGLTEAPLQ--PTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIE 660 (750)
T ss_pred hhccccCCCC--CcchHHHHHHHHHhcccccccccceEEec--c-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceE
Confidence 9976655554 78999999999999999999999988763 3 66 58899999999999999999999866532233
Q ss_pred EEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhc
Q 001674 577 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656 (1033)
Q Consensus 577 v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~I 656 (1033)
|... .....+.++|.|+|+||+++..++|
T Consensus 661 I~~~---------------------------------------------------r~ed~~t~sV~dng~Gi~~a~~~ri 689 (750)
T COG4251 661 ISAE---------------------------------------------------RQEDEWTFSVRDNGIGIDPAYFERI 689 (750)
T ss_pred Eeee---------------------------------------------------ccCCceEEEecCCCCCcCHHHHHHH
Confidence 2211 0112367999999999999999999
Q ss_pred cCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCC
Q 001674 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (1033)
Q Consensus 657 FepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~ 714 (1033)
|..|.+..+ ...+.|||+||+|||+|++.|+|+|+|+|.+|.|+||.|++|....+
T Consensus 690 F~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 690 FVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred HHHHHhcCc--hhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 999988643 34678999999999999999999999999999999999999987644
No 28
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=3e-26 Score=262.94 Aligned_cols=211 Identities=23% Similarity=0.420 Sum_probs=182.1
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001674 438 SQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 438 s~Fla~vSHELRTPLn~I~g~le---lL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
.++.+.+||||+.||++|.++++ .|.+....++-.+.++.|..-.++|-.+..+|-.|++--... ..++.+.+
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~~ 460 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLRE 460 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHHH
Confidence 47999999999999999999986 466777777888999999999999999999999999865444 45789999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC---CCeEEEEEEEeecccccchhhh
Q 001674 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVET 591 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~i~i~~ 591 (1033)
.|++++.++....+..+..+....++ .|..|.+|+.||+|||.|||+||+..+. ++.|.|.+..
T Consensus 461 ai~~Al~ll~~R~~~~~~~l~~~~~~-~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------------ 527 (603)
T COG4191 461 AIEGALELLRGRLRAAGVELELDLPD-APLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------------ 527 (603)
T ss_pred HHHHHHHHHHHhhhccCceeeccCCC-CCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------------
Confidence 99999999999999999999887665 3568999999999999999999999974 3555554421
Q ss_pred hhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCC
Q 001674 592 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671 (1033)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~ 671 (1033)
+...+.|+|.|||+||+++...++|+||++.++ ..
T Consensus 528 -----------------------------------------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~----~~ 562 (603)
T COG4191 528 -----------------------------------------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP----VG 562 (603)
T ss_pred -----------------------------------------cCCeEEEEEccCCCCCCHHHHHhhcCCccccCc----cc
Confidence 122478999999999999999999999997542 35
Q ss_pred CcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 672 ~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
.|.||||+||+.|++-|||+|.+.+.++.|+.|+++|+.
T Consensus 563 ~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 563 KGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred CCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 699999999999999999999999999999999999974
No 29
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=4.2e-29 Score=264.52 Aligned_cols=222 Identities=23% Similarity=0.391 Sum_probs=183.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001674 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 435 ~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
++-+.+.++++|||||||.||.|.+++|.....++..++|.+.|-+.+++|.+|++.+.-++- .-..+..++|+++
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 355678999999999999999999999988777777899999999999999999998865543 3344566899999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC---C--CeEEEEEEEeecccccchh
Q 001674 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---K--GHIFVTVYLVEEVVDSIEV 589 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~---~--G~I~v~v~~~~~~~~~i~i 589 (1033)
+++.|..+.+..+ ..++.+.-++++.+|. +.+|+++|.|++.||+.||...-. . |.|.++-+..-.. .+
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~----~i 279 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL----TI 279 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE----Ec
Confidence 9999999887665 4578999999999996 789999999999999999999875 3 7777664321110 00
Q ss_pred hhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCC
Q 001674 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (1033)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~ 669 (1033)
........+.++|.|||+|||++.++++|.||...
T Consensus 280 ---------------------------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~------ 314 (363)
T COG3852 280 ---------------------------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG------ 314 (363)
T ss_pred ---------------------------------------cCceeEeeeeeEEecCCCCCChHHhhhcccccccc------
Confidence 01112334678999999999999999999999853
Q ss_pred CCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 670 ~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+.+||||||+|+++++..|||.|.|+|.||. |+|++.+|..+
T Consensus 315 r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~~ 356 (363)
T COG3852 315 REGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIRK 356 (363)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEEeccCCc-eEEEEEeeccc
Confidence 4579999999999999999999999999985 99999999865
No 30
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=3.9e-28 Score=286.01 Aligned_cols=222 Identities=20% Similarity=0.304 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001674 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 421 ~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
+.++++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....++|..++++++++++.+.
T Consensus 213 ~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~ 287 (435)
T PRK09467 213 RAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQ 287 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445566667777788899999999999999999999998877532 233456778889999999999999998765
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe
Q 001674 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~ 580 (1033)
. ....++++.+++++++.... ..+..+.+.+++. +..+.+|+..|++|+.||++||+||+ .|.|.|++...
T Consensus 288 ~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~ 358 (435)
T PRK09467 288 E---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE 358 (435)
T ss_pred C---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec
Confidence 3 34567899999999987664 3444555555443 34788999999999999999999998 57777665321
Q ss_pred ecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcc
Q 001674 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (1033)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (1033)
...+.|+|+|+|+||+++.++++|+||
T Consensus 359 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f 385 (435)
T PRK09467 359 -----------------------------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPF 385 (435)
T ss_pred -----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCc
Confidence 124679999999999999999999999
Q ss_pred cccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 661 ~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
++.+.+. ..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 386 ~~~~~~~--~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 386 TRGDSAR--GSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred ccCCCCC--CCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 9977543 347999999999999999999999999999999999999974
No 31
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=5.4e-28 Score=286.10 Aligned_cols=226 Identities=20% Similarity=0.315 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001674 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 422 ~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~-~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
.++.+..+.++......+|++.+|||||||++.+.+.++.+.....++ ...++++.+...++++..++++++++++++.
T Consensus 222 ~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~ 301 (449)
T PRK10337 222 ALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDS 301 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444555555556678999999999999999999998776544333 3457889999999999999999999999998
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEE
Q 001674 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 579 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~ 579 (1033)
+.......++++.+++++++..+...+..+++++.+..++. +..+.+|+..+.+++.||++||+||++.| .|.+++..
T Consensus 302 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~ 380 (449)
T PRK10337 302 LDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA 380 (449)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe
Confidence 87666778899999999999999988999999999887653 34568999999999999999999999764 55444310
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001674 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
..++|+|+|+|||++.++++|+|
T Consensus 381 ---------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~~ 403 (449)
T PRK10337 381 ---------------------------------------------------------RNFTVRDNGPGVTPEALARIGER 403 (449)
T ss_pred ---------------------------------------------------------eEEEEEECCCCCCHHHHHHhccc
Confidence 14899999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001674 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~l 708 (1033)
||+.+. +..+|+||||+||++++++|||+|.++|.+++|++|++++
T Consensus 404 f~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 404 FYRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred ccCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 998543 2346999999999999999999999999999999999863
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=2.7e-28 Score=274.69 Aligned_cols=218 Identities=32% Similarity=0.427 Sum_probs=190.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~--~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~ 513 (1033)
.+.+|++.++|||||||++|.++++++... ..++...++++.+...++++..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345799999999999999999999988654 344566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhh
Q 001674 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 514 ~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
++++.++..+......+++.+.+.++. +..+.+|+..|.+|+.||++||+||++. +.|.|++...
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------ 258 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------ 258 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc------------
Confidence 999999999999999999999888732 3468899999999999999999999864 5555554211
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001674 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
...+.|.|.|+|+|||++.++++|+||++.+...+...+
T Consensus 259 -----------------------------------------~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~ 297 (333)
T TIGR02966 259 -----------------------------------------GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTG 297 (333)
T ss_pred -----------------------------------------CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCC
Confidence 113679999999999999999999999987766556678
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001674 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~l 708 (1033)
|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 298 g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 298 GTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred CCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 999999999999999999999999999999999974
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=8.8e-27 Score=276.57 Aligned_cols=218 Identities=25% Similarity=0.394 Sum_probs=190.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
...+|++.++||+|||++.+.+.++++.+....+...++++.+...++++..++++++++++++.+.......++++.++
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 34578999999999999999999999887555566788999999999999999999999999999888777889999999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhhhc
Q 001674 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
++++...+...+..+++.+.+.++ +..+.+|...|.+++.||+.||+||+.+ |.|.|++...
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~-------------- 397 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD-------------- 397 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--------------
Confidence 999999999999999999988765 4468899999999999999999999954 6777766421
Q ss_pred cccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcc
Q 001674 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~Gt 674 (1033)
...+.|+|+|+|+|||++.++++|+||++.+.. ....+|+
T Consensus 398 ---------------------------------------~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~ 437 (475)
T PRK11100 398 ---------------------------------------GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKST 437 (475)
T ss_pred ---------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCc
Confidence 124789999999999999999999999976432 2345799
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 675 GLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
||||+||+++++.|||+|.++|.++.||+|.+++|.
T Consensus 438 GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~ 473 (475)
T PRK11100 438 GLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473 (475)
T ss_pred chhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeC
Confidence 999999999999999999999999999999999986
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=3.2e-27 Score=269.97 Aligned_cols=217 Identities=24% Similarity=0.434 Sum_probs=173.6
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
+..+|++.+||||||||++|.|+++++.+...++..+++++.+..+++++..++++++++.+... ..+.++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 45789999999999999999999999887666667789999999999999999999998765432 245799999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhcc--CCCeEEEEEEEeecccccchhhhhh
Q 001674 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT--EKGHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT--~~G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.|.|.|.+.......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888777554 467888877766655 478999999999999999999997 3455555442110000
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001674 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
.........+.++|.|+|+|||++.++++|+||++. +.+|
T Consensus 272 ----------------------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g 311 (348)
T PRK11073 272 ----------------------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGG 311 (348)
T ss_pred ----------------------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCC
Confidence 000011123579999999999999999999999863 2469
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
+||||+|||++++.|||+|+++|.+++ |+|++++|+
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 999999999999999999999999885 999999986
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=1e-25 Score=251.04 Aligned_cols=217 Identities=39% Similarity=0.666 Sum_probs=184.1
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ceeEeEeecHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK-LELEAVSFNLRA 514 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~-l~l~~~~~dL~~ 514 (1033)
.+..|++.++||+|||++.+.+.++++.....+ .+.+++..+...++++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478999999999999999999998865544222 267888888899999999999999999998873 344466778999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhc
Q 001674 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
++++++..+...+..+++.+....+ .+..+.+|+.++.||+.||++||+||++.|.|.|.+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999999888888888886554 2346889999999999999999999998777777664211
Q ss_pred cccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcc
Q 001674 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~Gt 674 (1033)
..+.++|.|+|+||+++.++++|+||++.+...+ |+
T Consensus 258 ----------------------------------------~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~ 293 (336)
T COG0642 258 ----------------------------------------EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GT 293 (336)
T ss_pred ----------------------------------------CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CC
Confidence 0578999999999999999999999998765322 99
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 675 GLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
||||+|||++++.|||+|.++|.++.||+|++++|...
T Consensus 294 GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 294 GLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999999999999999854
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=9e-26 Score=274.90 Aligned_cols=214 Identities=27% Similarity=0.501 Sum_probs=184.6
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
+..+|++.++|||||||+.|.++++++.....+....++++.+...++++..++++++++++.+... ..++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHH
Confidence 4568999999999999999999999987765566778999999999999999999999999876433 457999999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeecccccchhhhhhc
Q 001674 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+. .|.|.|++...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~------------- 530 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS------------- 530 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC-------------
Confidence 9999999998878899999988876655 4778999999999999999999975 456666553211
Q ss_pred cccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcc
Q 001674 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~Gt 674 (1033)
+ ..+.|+|+|+|+|||++.++++|+||++.+ .+|+
T Consensus 531 --------------------------------------~-~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~ 565 (607)
T PRK11360 531 --------------------------------------D-GQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGT 565 (607)
T ss_pred --------------------------------------C-CEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCC
Confidence 0 127899999999999999999999999643 3589
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 675 GLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
||||++|++++++|||+|+++|.+|+||+|++++|...
T Consensus 566 glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 566 GLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred chhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999854
No 37
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.93 E-value=2.8e-24 Score=267.51 Aligned_cols=203 Identities=21% Similarity=0.322 Sum_probs=162.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
+.+++.+.++||||||++.+..+++...+...+ +.++++++.+.++.+++.++++++.+.. ...+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHH
Confidence 346788999999999999999888876654433 3456788889999999998887764332 245667899999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeecccccchhhhhh
Q 001674 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
+++++.+.+... ...+++. ++++ ..+.+|+.++.||+.||++||+||++ +|.|.|++...+
T Consensus 548 ll~~~~~~~~~~--~~~~~l~--~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~------------ 609 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEVS--IDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVEREC------------ 609 (679)
T ss_pred HHHHHHHHhhhh--cCCceEE--eCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcC------------
Confidence 999998876543 2334443 3333 46889999999999999999999996 467777664211
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhh-HhhccCcccccCCCCCCCCC
Q 001674 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA-QSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-~~~IFepF~q~d~s~s~~~~ 672 (1033)
..+.|+|+|+|+|||++. ++++|+||++.+ .+
T Consensus 610 -----------------------------------------~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~ 642 (679)
T TIGR02916 610 -----------------------------------------GAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GA 642 (679)
T ss_pred -----------------------------------------CEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CC
Confidence 246899999999999999 999999998643 26
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 001674 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp 709 (1033)
|+||||+|||++++.|||+|.++|.+|+||+|++++|
T Consensus 643 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 643 GMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9999999999999999999999999999999999986
No 38
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.93 E-value=2.8e-25 Score=233.39 Aligned_cols=186 Identities=30% Similarity=0.450 Sum_probs=138.4
Q ss_pred CCCCCHHHHHHHHHH--hhhhCCCceeeeeeeccCcchHHHHHHHhCceeeeecccccCCCCCCCCCCCCcceeeeEe--
Q 001674 157 PSAIDQMTFTRYTER--TAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIF-- 232 (1033)
Q Consensus 157 ~~~id~~~f~~~t~~--~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~-- 232 (1033)
++.|++++|..|++. ++.++|++.+++|+|+|.+++|++||+++........ ...|.+.+++|+||.|
T Consensus 2 s~~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~~~~~~~f--------~i~~~~~~~~~~pv~yi~ 73 (193)
T PF03924_consen 2 SEEVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLRAEGFPDF--------RIRPDGPRDEYFPVTYIE 73 (193)
T ss_dssp S----HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT------S----------BTTS--SEE-BEEEE-
T ss_pred CCccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHhhhcccce--------EeeeCCCCCCceEEEEee
Confidence 477999999999999 9999999999999999999999999998753322211 1124558999999977
Q ss_pred eeCCCceEEeeccCCCcccHHHHHHHHHcCCceeecceeecccC--CceEEEEEeeeccCCCCCCChhHHHHhhcceeee
Q 001674 233 AQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN--RLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310 (1033)
Q Consensus 233 ~~~~~~~~~g~D~~s~~~~~~~i~~Ar~tg~~~~t~p~~l~~~~--~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~ 310 (1033)
|.+.+..++|+|++|+|.||++|.+|++||++++|+|++|++.+ +.|++++.|||..+.++..++++|...++||+.+
T Consensus 74 P~~~n~~~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~ 153 (193)
T PF03924_consen 74 PLEGNEAALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSA 153 (193)
T ss_dssp GGG--GGGBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEE
T ss_pred cchhHHhccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEE
Confidence 45667889999999999999999999999999999999999865 6999999999977666777899999999999999
Q ss_pred eeeHHHHHHHHHHhhhccccEEEEeeccCCCCCceecccc
Q 001674 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS 350 (1033)
Q Consensus 311 ~~~v~~l~~~~l~~~~~~~~i~v~~~d~~~~~~~~~~y~~ 350 (1033)
+|++++|++.++........+.+.+||.+....+..+|++
T Consensus 154 v~~~~~l~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 154 VFRVDDLFESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp EEEHHHHHHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred EEEHHHHHHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 9999999999987665446899999998777777777763
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-24 Score=273.94 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 001674 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503 (1033)
Q Consensus 424 ~~~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l 503 (1033)
+++.++++++.++|++|+++|||||||||++|.|+++++.+...++....++..+......+..+.+.++..
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 663 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS-------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 344456667778899999999999999999999999998877667777777766666666665555544322
Q ss_pred eeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC----CeEEEEEEE
Q 001674 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK----GHIFVTVYL 579 (1033)
Q Consensus 504 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~ 579 (1033)
....++++.++++++...+......+...+.+.++...+.....+...+.|||.||++||+||+.. |.|.|++..
T Consensus 664 -~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 664 -EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred -ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 233568999999999998887776666666666554443334456778899999999999999843 455555421
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001674 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
. +...+.|+|+|||+|||++..
T Consensus 743 ~----------------------------------------------------~~~~v~i~V~D~G~GI~~~~~------ 764 (807)
T PRK13560 743 Q----------------------------------------------------GDGMVNLCVADDGIGLPAGFD------ 764 (807)
T ss_pred c----------------------------------------------------CCCEEEEEEEeCCCcCCcccc------
Confidence 0 112478999999999998731
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
...|+||||+|||+||++|||+|+|+|. +||||+|+||+.
T Consensus 765 ----------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~ 804 (807)
T PRK13560 765 ----------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMS 804 (807)
T ss_pred ----------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCC
Confidence 1247889999999999999999999994 799999999974
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.90 E-value=1.3e-22 Score=245.41 Aligned_cols=195 Identities=22% Similarity=0.319 Sum_probs=136.8
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHH
Q 001674 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 516 (1033)
Q Consensus 437 Ks~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll 516 (1033)
..++++.+|||+||||++|.|++++... .+..+++..+ ++.....++++++..+ . .++
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~--~-------------~~~ 396 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK--S-------------PVI 396 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc--C-------------HHH
Confidence 3456788999999999999999986432 1223343322 2222222333332211 0 112
Q ss_pred HHHHHHHHhhhhccCcEEEEEeCCCCCceE-EecHHHHHHHHHHHHHHHHhccC---CCeEEEEEEEeecccccchhhhh
Q 001674 517 DDVLSLFSGKSQDKGVELAVYISDRVPETL-IGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 517 ~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v-~gD~~rL~QIL~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
...+......+..+++.+.+..++.+|... ..+...|.||+.||++||+||+. .|.|.|++...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------ 464 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------ 464 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc------------
Confidence 222222334567788988887766555322 22446899999999999999963 45666554321
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001674 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
...+.|+|+|+|+|||++.++++|+||++. +.+
T Consensus 465 -----------------------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~ 497 (542)
T PRK11086 465 -----------------------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGS 497 (542)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCC
Confidence 124689999999999999999999999853 236
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
|+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 498 g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 498 NRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred CCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999854
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.89 E-value=1.7e-21 Score=233.10 Aligned_cols=195 Identities=11% Similarity=0.187 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecH
Q 001674 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (1033)
Q Consensus 434 ~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL 512 (1033)
++.+.++.+.++||+||||++|.+.++++.+...+ ++.++..+.+.+.+.++.+.++++++..+-. ...++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~------~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPR------QLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCc------ccccCCH
Confidence 34567888999999999999999999988664433 3455778889999999999999998765421 2346899
Q ss_pred HHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhh
Q 001674 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 513 ~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.|++...
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 9999999988876554444444443332 22345678889999999999999999988877766421
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001674 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
...+.++|+|+|+|||+++ .
T Consensus 439 -----------------------------------------~~~i~l~V~DnG~Gi~~~~-------------------~ 458 (495)
T PRK11644 439 -----------------------------------------DERLMLVIEDDGSGLPPGS-------------------G 458 (495)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCcCC-------------------C
Confidence 1247899999999999652 3
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
|+|+||+|||++++.|||+|+++| ++||+|++++|.
T Consensus 459 ~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 459 QQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 679999999999999999999999 889999999984
No 42
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.89 E-value=6.3e-22 Score=226.12 Aligned_cols=211 Identities=22% Similarity=0.339 Sum_probs=166.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEe
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDV---TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 509 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~---~l~~---~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~ 509 (1033)
|..+-..-++|||||||+-|...+|-|... ..++ .-+++.++|.+....+.+||++.-.|+|+-.- +.++
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p----~~e~ 560 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAP----KLEK 560 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCCc
Confidence 344455569999999999999999977532 2222 23678899999999999999999999997544 3457
Q ss_pred ecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-----e-EEEEEEEeecc
Q 001674 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-----H-IFVTVYLVEEV 583 (1033)
Q Consensus 510 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-----~-I~v~v~~~~~~ 583 (1033)
.||++++++++.++.. ....+.+..+...+ |....+|+..|.|++.||+.||..+-+.- . -.++++.
T Consensus 561 ~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~---- 633 (712)
T COG5000 561 SDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL---- 633 (712)
T ss_pred chHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE----
Confidence 8999999999988764 34677888887766 77888899999999999999999986421 0 0111111
Q ss_pred cccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccccc
Q 001674 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (1033)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (1033)
......+++.|.|||.|.|.|.+.|+||||++.
T Consensus 634 -----------------------------------------------~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTt 666 (712)
T COG5000 634 -----------------------------------------------DDADGRIVVDVIDNGKGFPRENRHRALEPYVTT 666 (712)
T ss_pred -----------------------------------------------ecCCCeEEEEEecCCCCCChHHhhhhccCceec
Confidence 011234789999999999999999999999864
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC-CCceEEEEEEEe
Q 001674 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP-NIGSTFTFTAVF 710 (1033)
Q Consensus 664 d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~-g~GStF~~~lp~ 710 (1033)
. .+||||||+|||+|+|-|||.|.+...| -.|....+.+|.
T Consensus 667 r------~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 667 R------EKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred c------cccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 3 3699999999999999999999999884 359999998886
No 43
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.89 E-value=1.5e-21 Score=236.97 Aligned_cols=198 Identities=21% Similarity=0.312 Sum_probs=144.2
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHH
Q 001674 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518 (1033)
Q Consensus 439 ~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~ 518 (1033)
+.+..++||+++||++|.|++++- ...+.++.+...+..+..+++++....+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 356678999999999999988752 1234566777777778887777766432 1122222
Q ss_pred HHHHHHhhhhccCcEEEEEeCCCCC-ceEEecHHHHHHHHHHHHHHHHhcc---CCCeEEEEEEEeecccccchhhhhhc
Q 001674 519 VLSLFSGKSQDKGVELAVYISDRVP-ETLIGDPGRFRQIITNLMGNSIKFT---EKGHIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 519 v~~~~~~~a~~k~i~l~~~i~~~~p-~~v~gD~~rL~QIL~NLl~NAiKfT---~~G~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
+.. ....+.++++.+.+..+.... .....|+..|.||+.||++||+||. +.|...|.+....
T Consensus 399 l~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------- 464 (545)
T PRK15053 399 LFG-KVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------- 464 (545)
T ss_pred HHH-HHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE-------------
Confidence 222 234566788887765443321 1235699999999999999999994 3343333332211
Q ss_pred cccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcc
Q 001674 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~Gt 674 (1033)
+...+.|+|+|+|+|||++.+++||+|||+.+ ++..+|+
T Consensus 465 --------------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~ 503 (545)
T PRK15053 465 --------------------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEH 503 (545)
T ss_pred --------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCc
Confidence 11246899999999999999999999999743 3345689
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 675 GLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 504 GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 504 GIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred eeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 99999999999999999999999999999999999753
No 44
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.86 E-value=3.5e-20 Score=198.20 Aligned_cols=228 Identities=16% Similarity=0.148 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHH
Q 001674 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQM 163 (1033)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~ 163 (1033)
|+++.-++.+++++++++.++-......++.-|-.|...+|.++.+|+++++...+.+.+-.+||.++ ...|++.
T Consensus 10 ~~~~~pl~~~i~~LLltl~~~g~a~~~t~~~sr~~fe~~A~~~~nal~~rv~~~~~~l~st~a~f~s~-----~~~it~~ 84 (348)
T COG3614 10 VRVWVPLLVLIVSLLLTLTAAGLAYSLTLEQSRTLFERLADRQTNALQQRVDLDQHLLRSTRAFFRSS-----TSDITRR 84 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCcHH
Confidence 33444444477777788777777778888888889999999999999999999999999999999885 7789999
Q ss_pred HHHHHHHHhhhhCCCceeeeeeeccCcchHHHHHHHhCceeee-ecccccCCCCCCCC-CCCCcceeeeEeee--CC-Cc
Q 001674 164 TFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR-MDTFEHNPVHKDEP-SPIEEEYAPVIFAQ--DT-VS 238 (1033)
Q Consensus 164 ~f~~~t~~~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~~-~~~~~~~~~~~~~~-~~~~~~Y~pvi~~~--~~-~~ 238 (1033)
+|..|+. ++...-.+.|+.|.+.|...+++.||..+-..+.. ......+..++..| ...+++|+||-|.+ .. |.
T Consensus 85 ~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl~~~N~ 163 (348)
T COG3614 85 EFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPLNYDNR 163 (348)
T ss_pred HHHHhhh-hhcccccchhhhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCCCccch
Confidence 9999999 77777889999999999999999999754222211 11111122333456 77788999996654 44 77
Q ss_pred eEEeeccCCCcccHHHHHHHHHcCCceeecceeeccc-----CCceEEEEEeeeccCCCCCCChhHHHHhhcceeeeeee
Q 001674 239 HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKT-----NRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFD 313 (1033)
Q Consensus 239 ~~~g~D~~s~~~~~~~i~~Ar~tg~~~~t~p~~l~~~-----~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~ 313 (1033)
.++||||.|+|.||+|+..|++++++.+|+|++|+|. ...|++++.|||+...++...+. .....||++..+.
T Consensus 164 ~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~g--q~~l~Gfl~~~~~ 241 (348)
T COG3614 164 KALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPG--QAVLVGFLYLATR 241 (348)
T ss_pred hhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcc--hhhhhhhHHHHHH
Confidence 8999999999999999999999999999999999983 24789999999998765544332 3345688888877
Q ss_pred HHHHHH
Q 001674 314 IESLVE 319 (1033)
Q Consensus 314 v~~l~~ 319 (1033)
..+++.
T Consensus 242 ~~~~~q 247 (348)
T COG3614 242 FEKLVQ 247 (348)
T ss_pred Hhhhhh
Confidence 776654
No 45
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-19 Score=198.27 Aligned_cols=210 Identities=20% Similarity=0.343 Sum_probs=172.9
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001674 438 SQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 438 s~Fla~vSHELRTPLn~I~g~le---lL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
.+-+.++||||..|||++..++= ...+...+.....++..|..-.+++-.+|+.+-.|+|-.+++-.+ .|++|++
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 35678999999999999998863 233444556668999999999999999999999999988887555 4789999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC--CeEEEEEEEeecccccchhhhh
Q 001674 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK--GHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~--G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
+++.+.+++..+.+.+.+.+..-. +. .+|.||..+++||+.||+-||+..+.. ..|.+.+.
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~-------------- 592 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--DD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL-------------- 592 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--cc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee--------------
Confidence 999999999999998888876543 22 378999999999999999999998743 33433321
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001674 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
..+...+++.|.|+|.|-|-+..+++|.||... +.-
T Consensus 593 --------------------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFtts------K~v 628 (673)
T COG4192 593 --------------------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTS------KEV 628 (673)
T ss_pred --------------------------------------cCcccceEEEEecCCCCCchhHHHHhcCCcccc------ccc
Confidence 011224789999999999999999999999642 446
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
|.|||||||..|++.|.|++.+.|...+|..+.+.+..
T Consensus 629 gLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 629 GLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred ccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 99999999999999999999999999999998877644
No 46
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.82 E-value=1.1e-19 Score=195.40 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=109.9
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..||+|.++.+|.+|++.+. .. ||+|++|++||+|||+++|++||+.
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~-~dlviLD~~lP~~dG~~~~~~iR~~----------- 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-EQ-PDLVLLDLMLPDLDGLELCRRLRAK----------- 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cC-CCEEEEECCCCCCCHHHHHHHHHhh-----------
Confidence 7999999999999999999999999999999999999985 45 9999999999999999999999963
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 1028 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~~ 1028 (1033)
....+|||++||..+..++..++++|||||++|||++++|..+|+..+...
T Consensus 69 ----------~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 69 ----------KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred ----------cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 123689999999999999999999999999999999999999999887654
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.82 E-value=6.7e-19 Score=202.60 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=141.5
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
.+.+|++.++||+||||+.|.|+++++.. .....++++.+...+.+|..+++++++.++ ..++++.++
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~---~~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGR---ADDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 45678999999999999999999998762 223456788899999999999999987653 356899999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHHhc---c-CCCeEEEEEEEeecccccchhh
Q 001674 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKF---T-EKGHIFVTVYLVEEVVDSIEVE 590 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD-~~rL~QIL~NLl~NAiKf---T-~~G~I~v~v~~~~~~~~~i~i~ 590 (1033)
+++++..+... +..+.+..+ .+ .+..| ...|.||+.||+.||+|| + +.|.|.|.+...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~---------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS---------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec----------
Confidence 99999877543 344444322 11 22222 356999999999999999 4 357777765211
Q ss_pred hhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCC
Q 001674 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (1033)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~ 670 (1033)
.+...+.+.|.|+|.|++++
T Consensus 300 -----------------------------------------~~~~~~~i~v~d~G~~~~~~------------------- 319 (361)
T PRK13559 300 -----------------------------------------PEGAGFRIDWQEQGGPTPPK------------------- 319 (361)
T ss_pred -----------------------------------------CCCCeEEEEEECCCCCCCCC-------------------
Confidence 01124789999999997654
Q ss_pred CCcccchHHHHHHHHHH-cCCEEEEEEeCCCceEEEEEEEeC
Q 001674 671 HGGTGIGLSISKYLVGR-MKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 671 ~~GtGLGLsI~k~Lv~~-mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
..|+|+||.||+++++. |||+|++++. +.||+|++++|..
T Consensus 320 ~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 24789999999999987 9999999998 5799999999963
No 48
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.80 E-value=2.5e-19 Score=170.85 Aligned_cols=109 Identities=36% Similarity=0.595 Sum_probs=97.2
Q ss_pred ecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCC
Q 001674 548 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (1033)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1033)
||+.+|++|+.||++||+||+++ |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999976 88888775321
Q ss_pred CCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 001674 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706 (1033)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~ 706 (1033)
..+.|+|+|+|.|||++.++++|+||++.+. .....+|+||||++|+.++++|+|++++.|.++.||+|+|
T Consensus 36 --------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~ 106 (111)
T PF02518_consen 36 --------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTF 106 (111)
T ss_dssp --------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEE
T ss_pred --------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEE
Confidence 2578999999999999999999999999876 2334578999999999999999999999999999999999
Q ss_pred EEEe
Q 001674 707 TAVF 710 (1033)
Q Consensus 707 ~lp~ 710 (1033)
++|+
T Consensus 107 ~~p~ 110 (111)
T PF02518_consen 107 TLPL 110 (111)
T ss_dssp EEEG
T ss_pred EEEC
Confidence 9996
No 49
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.76 E-value=5.6e-17 Score=197.82 Aligned_cols=193 Identities=20% Similarity=0.204 Sum_probs=140.3
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHH----HhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecH
Q 001674 439 QFLATVSHEIRTPMNGVLGMLDM----LMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (1033)
Q Consensus 439 ~Fla~vSHELRTPLn~I~g~lel----L~~~--~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL 512 (1033)
+..+.++||+++|++.++.++.+ +.+. ...+...+.+..+.....++...+.+++...+ +...++++
T Consensus 362 ~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l 434 (565)
T PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANL 434 (565)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence 34456999999999888877653 3322 11234456667777777777777777776443 23456899
Q ss_pred HHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhh
Q 001674 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 513 ~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
.+.+++++..+.... ++.+.+......+.....++.++.|++.||+.||+||++.|.|.+.+...
T Consensus 435 ~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~------------ 499 (565)
T PRK10935 435 GSALEEMLDQLRNQT---DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN------------ 499 (565)
T ss_pred HHHHHHHHHHHHHhh---CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc------------
Confidence 999999999887542 33444333211111223355679999999999999999988877765421
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001674 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
+...+.++|.|+|+|||++. ..
T Consensus 500 ----------------------------------------~~~~~~i~V~D~G~Gi~~~~------------------~~ 521 (565)
T PRK10935 500 ----------------------------------------PDGEHTVSIRDDGIGIGELK------------------EP 521 (565)
T ss_pred ----------------------------------------CCCEEEEEEEECCcCcCCCC------------------CC
Confidence 01247899999999999631 24
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
|+||||+||+++++.|||+|+++|.+++||+|++++|..
T Consensus 522 ~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~ 560 (565)
T PRK10935 522 EGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQ 560 (565)
T ss_pred CCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCC
Confidence 789999999999999999999999999999999999975
No 50
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.74 E-value=1.7e-16 Score=182.24 Aligned_cols=194 Identities=26% Similarity=0.393 Sum_probs=140.2
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHH
Q 001674 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518 (1033)
Q Consensus 439 ~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~ 518 (1033)
+-|...+||.+|=|+.|.|++++=. -++..+|+..+.+.-+. .++.+.. ++. +..+.-
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~----yd~a~~~I~~~~~~qq~---~~~~l~~--~i~-------------~~~lAg 392 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE----YDDALDYIQQESEEQQE---LIDSLSE--KIK-------------DPVLAG 392 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHhhhhh---hHHHHHH--hcc-------------cHHHHH
Confidence 4466789999999999999998632 12334555544433322 2222211 111 123334
Q ss_pred HHHHHHhhhhccCcEEEEEeCCCCCce-EEecHHHHHHHHHHHHHHHHhccC--C--CeEEEEEEEeecccccchhhhhh
Q 001674 519 VLSLFSGKSQDKGVELAVYISDRVPET-LIGDPGRFRQIITNLMGNSIKFTE--K--GHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 519 v~~~~~~~a~~k~i~l~~~i~~~~p~~-v~gD~~rL~QIL~NLl~NAiKfT~--~--G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
.+---...|+++|+++.++.+..+|.. -.-|+.-+--|+-||++||+..+. . ..|.+.++ +
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~--~------------ 458 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS--D------------ 458 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEE--e------------
Confidence 444445678999999999877666541 234889999999999999999874 2 34444432 1
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001674 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
+...+.|+|+|||+|||++.++++|+.=|..+ ..+|
T Consensus 459 ---------------------------------------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk-----~~~~ 494 (537)
T COG3290 459 ---------------------------------------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTK-----NTGG 494 (537)
T ss_pred ---------------------------------------cCCEEEEEEeCCCCCCChHHHHHHHhcCcccc-----CCCC
Confidence 22368899999999999999999999866432 2478
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
.|.||++||++|+.+||.|+++|+++.||+|++.+|...
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999999999999999999999854
No 51
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.71 E-value=6.1e-16 Score=182.83 Aligned_cols=256 Identities=17% Similarity=0.169 Sum_probs=182.8
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++.........+...|..+..+.+..+++..+.. ..++.+++|...... .....+..++.........
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~---~g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGM---DGFEVCRRLKSDPATTHIP 78 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCC---CHHHHHHHHHcCcccCCCC
Confidence 68999999999988888898999999999999999887754 346788887654332 2233455555432222223
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCC-------CCCC----CCCCcchhhccCCCCe
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG-------NIRN----WELPSMSLRHLLLGRK 888 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~-------~~~~----~~~~~~~~~~~~~~~~ 888 (1033)
++++.............. .+...++.||+....+...+...+...... .... ...+...........+
T Consensus 79 ii~~s~~~~~~~~~~~~~-~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T PRK09581 79 VVMVTALDDPEDRVRGLE-AGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAYANKDEDGR 157 (457)
T ss_pred EEEEECCCCHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccccccccCce
Confidence 333333222111111111 255678999999988877766554311000 0000 0000001111234568
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccc
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
||||||++..+..+..+|.. ++.+..+.++.+|+..+. .+.||+|++|+.||.|||++++++||+..
T Consensus 158 vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i~~~~----------- 224 (457)
T PRK09581 158 ILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQLRSKE----------- 224 (457)
T ss_pred EEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHHHhcc-----------
Confidence 99999999999999999965 577788999999999874 57899999999999999999999999732
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001674 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
..+++|||++|++.+.+...+|+++|++||+.||++.++|...+.+
T Consensus 225 ---------~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~ 270 (457)
T PRK09581 225 ---------RTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRT 270 (457)
T ss_pred ---------ccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHH
Confidence 1347999999999999999999999999999999999999988865
No 52
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.71 E-value=2.5e-15 Score=183.79 Aligned_cols=182 Identities=18% Similarity=0.202 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHHHHHHHHh
Q 001674 448 IRTPMNGVLGMLDMLM--DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525 (1033)
Q Consensus 448 LRTPLn~I~g~lelL~--~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v~~~~~~ 525 (1033)
|..+|+.+...+..+. ....+++.++.+..+....+.+...+.+++...+.. ..+.++.+.+++++..+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 3334455554444333 223456677889999999999999999999876642 3457888999999888875
Q ss_pred hhhccCcEEEEEeCCCCCceEE-ecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCC
Q 001674 526 KSQDKGVELAVYISDRVPETLI-GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604 (1033)
Q Consensus 526 ~a~~k~i~l~~~i~~~~p~~v~-gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~ 604 (1033)
.. ++.+.+.++... ..+. .++..+.||+.|+++||+||++.+.|.|++...
T Consensus 446 ~~---~~~i~~~~~~~~-~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~------------------------ 497 (569)
T PRK10600 446 RF---GFPVKLDYQLPP-RLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN------------------------ 497 (569)
T ss_pred Hh---CCeEEEEecCCc-ccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc------------------------
Confidence 54 344444433211 1122 244569999999999999999888877765321
Q ss_pred cccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHH
Q 001674 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684 (1033)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~L 684 (1033)
...+.|+|+|+|+|||++. ..|+|+||+||+++
T Consensus 498 -----------------------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~ 530 (569)
T PRK10600 498 -----------------------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDR 530 (569)
T ss_pred -----------------------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHH
Confidence 1246899999999999852 13689999999999
Q ss_pred HHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 685 VGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 685 v~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
++.|||+|.+.|.+++||+|++++|..
T Consensus 531 ~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 531 AQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 999999999999999999999999874
No 53
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.70 E-value=9.3e-17 Score=185.21 Aligned_cols=117 Identities=33% Similarity=0.480 Sum_probs=110.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..|..+..+|...||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~---------- 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR---------- 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 4699999999999999999999999999999999999999654 79999999999999999999999974
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||+||++.+.++..+|++.||.|||.|||+.++|...|++.++
T Consensus 74 ------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~ 121 (464)
T COG2204 74 ------------DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121 (464)
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999998765
No 54
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.70 E-value=1.3e-16 Score=151.30 Aligned_cols=111 Identities=36% Similarity=0.564 Sum_probs=104.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCC-EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
||||||++..+..+...|+..|+ .|..+.++.+|++.+. ++.||+|++|+.||+++|.+++++||+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~iiid~~~~~~~~~~~~~~i~~~----------- 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-KHPPDLIIIDLELPDGDGLELLEQIRQI----------- 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-HSTESEEEEESSSSSSBHHHHHHHHHHH-----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-ccCceEEEEEeeeccccccccccccccc-----------
Confidence 79999999999999999999999 9999999999999995 5779999999999999999999999974
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 1022 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1022 (1033)
.+++|||++|+..+.....+++++|+++|+.||++.++|.++|+
T Consensus 69 -----------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 69 -----------NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp -----------TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred -----------cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 24799999999999999999999999999999999999999874
No 55
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.68 E-value=1.2e-16 Score=175.17 Aligned_cols=119 Identities=32% Similarity=0.489 Sum_probs=109.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
..+||+|||.+.++..++..|+..||.+..++||++|+++.. .+++|+||+|++||+|||+|++++|+.+.+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-~~~~dlvllD~~mp~mdg~ev~~~lk~~~p------- 85 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGAEVLNKLKAMSP------- 85 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-ccCCceEEeeccCCCccHHHHHHHHHhcCC-------
Confidence 358999999999999999999999999999999999999885 466999999999999999999999998533
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.+.++|||++||.++.++..+|+.+|++|||.||+++.+|...++..
T Consensus 86 ------------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~ 132 (360)
T COG3437 86 ------------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSH 132 (360)
T ss_pred ------------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999888643
No 56
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=7e-16 Score=150.19 Aligned_cols=119 Identities=34% Similarity=0.523 Sum_probs=105.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChH-HHHHHhCCCC-CccEEEEcCCCCCCCHHHHHHHHHhhccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPH-QFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 963 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~-eAl~~l~~~~-~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~ 963 (1033)
+.+||+|||++.++..+..+|...|+.+..+.+|. +|++.+. .+ .||+|++|++||+|||+++++++|+.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~-~~~~~dlii~D~~mp~~~G~~~~~~l~~~------- 76 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR-ELPQPDLILLDINMPGMDGIELLRRLRAR------- 76 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhC-------
Confidence 56899999999999999999999999999999996 9999995 45 59999999999999999999999973
Q ss_pred ccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHhhCCC
Q 001674 964 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ-LYREVSRFFPP 1027 (1033)
Q Consensus 964 ~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~-L~~~v~r~~~~ 1027 (1033)
...+|+|++|++.......+++++|+++|+.||+...+ |..++.++...
T Consensus 77 ---------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 77 ---------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred ---------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 23578999999999998888999999999999977666 78888876543
No 57
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.67 E-value=2.3e-16 Score=181.54 Aligned_cols=115 Identities=27% Similarity=0.413 Sum_probs=105.4
Q ss_pred eEEEEeCCHHHHHHHHHHHh--hCCCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~--~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+||||||.+..|+.++.++. .+|++|+ +|.||++|++.++ ..+||+|++||.||+|||+++++.||+.
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~-e~~pDiviTDI~MP~mdGLdLI~~ike~-------- 73 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ-ETQPDIVITDINMPGMDGLDLIKAIKEQ-------- 73 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 79999999999999999996 5688655 8999999999995 5789999999999999999999999984
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+.+-+|++|+..+=+-+.+|+++|++|||.||++.++|..++.+..
T Consensus 74 --------------~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~ 120 (475)
T COG4753 74 --------------SPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKII 120 (475)
T ss_pred --------------CCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999998764
No 58
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.63 E-value=7.6e-15 Score=168.27 Aligned_cols=123 Identities=26% Similarity=0.395 Sum_probs=113.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 885 ~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
..++||||||+..++..+..+|...|+.+..+.+|++|+..+.+ .+||+||.|+.||+||||++|+++|+.+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~------ 203 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLER------ 203 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccc------
Confidence 45799999999999999999999999999999999999999964 58999999999999999999999998542
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 1028 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~~ 1028 (1033)
...+|||++|+..+.....++++.|++||++||++..+|...+++.++..
T Consensus 204 --------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~ 253 (435)
T COG3706 204 --------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRK 253 (435)
T ss_pred --------------cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999999999999999988876543
No 59
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.63 E-value=3.2e-15 Score=150.12 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=108.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.-|-||||+...|+.+..+|...||++.+..++.+-+... ....+.++++|+.||+|+|.|+-+++++.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-~~~~pGclllDvrMPg~sGlelq~~L~~~---------- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-PLDRPGCLLLDVRMPGMSGLELQDRLAER---------- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-cCCCCCeEEEecCCCCCchHHHHHHHHhc----------
Confidence 4689999999999999999999999999999999999985 46779999999999999999999999873
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
....|||++|++.+.....+++++||-|||.|||+.+.|+++|++.+.
T Consensus 74 ------------~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 74 ------------GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred ------------CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 336899999999999999999999999999999999999999988654
No 60
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.62 E-value=4.1e-14 Score=172.27 Aligned_cols=146 Identities=18% Similarity=0.282 Sum_probs=109.5
Q ss_pred ecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHH---HHHHHHHHHhcc-------------CCCeE
Q 001674 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHI 573 (1033)
Q Consensus 510 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QI---L~NLl~NAiKfT-------------~~G~I 573 (1033)
+.+..+++..-.+.+..+...+.++.+.+... .+..|+..+.++ |.||+.||++|+ +.|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34566666666666666665555555555433 256799999999 679999999996 23555
Q ss_pred EEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhH
Q 001674 574 FVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653 (1033)
Q Consensus 574 ~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~ 653 (1033)
.+++.. +...+.|+|+|+|.||+++.+
T Consensus 420 ~l~a~~-----------------------------------------------------~~~~v~I~V~DdG~GId~e~i 446 (670)
T PRK10547 420 ILSAEH-----------------------------------------------------QGGNICIEVTDDGAGLNRERI 446 (670)
T ss_pred EEEEEE-----------------------------------------------------cCCEEEEEEEeCCCCCCHHHH
Confidence 555431 112478999999999998654
Q ss_pred ---------------------hhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 654 ---------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 654 ---------------------~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+.||+|||..... .+..+|+|+||+|||++++.|||+|.++|.+|+||+|++++|+..
T Consensus 447 ~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 447 LAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred HHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 4699997754332 234579999999999999999999999999999999999999854
No 61
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.61 E-value=6.9e-15 Score=156.70 Aligned_cols=117 Identities=30% Similarity=0.377 Sum_probs=105.9
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC-CEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYG-AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g-~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||++..|..++.+|...+ ++|+ .+.||.++++.+ ....||+|+||+.||+|||+|+++.||+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~-~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~--------- 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-RELKPDVVLLDLSMPGMDGLEALKQLRAR--------- 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh-hhcCCCEEEEcCCCCCCChHHHHHHHHHH---------
Confidence 59999999999999999998876 7755 567799999986 46789999999999999999999999963
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.++++|+++|++.+.+...+++++|+++|+.|..+.++|.++|+..+..
T Consensus 72 -------------~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 72 -------------GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred -------------CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4568999999999999999999999999999999999999999987544
No 62
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.61 E-value=4.4e-15 Score=151.96 Aligned_cols=115 Identities=27% Similarity=0.442 Sum_probs=104.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||++...++-+.+++.. ||.+. +|.++++|..++. ...|||||+|+-||+.||++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~-~~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH-hhCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999975 77655 7899999999985 5678999999999999999999999973
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
+.++-||++||..+.++..+++++|+-|||.|||..+.|.+++.+|.
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999874
No 63
>PLN03029 type-a response regulator protein; Provisional
Probab=99.56 E-value=4.3e-14 Score=152.04 Aligned_cols=118 Identities=26% Similarity=0.409 Sum_probs=103.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCC-------------------CCccEEEEcCCCCCCCH
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-------------------HQFDACFMDIQMPEMDG 946 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~-------------------~~~DlIlmDi~MP~mdG 946 (1033)
..+||||||++.++..+..+|+..||.|.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 45899999999999999999999999999999999999987321 24789999999999999
Q ss_pred HHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001674 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 947 ~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
+++++.||+.. ....+|||++|+....+...+|+++|+++|+.||++..+|...+..
T Consensus 88 ~e~l~~ir~~~--------------------~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 88 YDLLKKIKESS--------------------SLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred HHHHHHHHhcc--------------------ccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHH
Confidence 99999999732 1236899999999999999999999999999999999999766543
No 64
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.53 E-value=1.2e-13 Score=148.69 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=103.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCE-EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||||||++..+..+...|... |+. |..+.++.+|++.+. ...||+|++|+.||++||+++++.||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~-~~~pdlvllD~~mp~~~gle~~~~l~~~-------- 75 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-RFKPGLILLDNYLPDGRGINLLHELVQA-------- 75 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhc--------
Confidence 58999999999999999999864 784 678999999999985 5679999999999999999999999963
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|+++
T Consensus 76 --------------~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~ 121 (225)
T PRK10046 76 --------------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 (225)
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHH
Confidence 2347899999999999999999999999999999999999999774
No 65
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.53 E-value=1.6e-13 Score=146.47 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~----------- 70 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQW----------- 70 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcC-----------
Confidence 7999999999999999999999999999999999998874 4679999999999999999999999852
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+|||++|+....+...+++++|++||+.||++.++|...+++....
T Consensus 71 ------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 71 ------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999876643
No 66
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.52 E-value=1.9e-13 Score=161.10 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=92.1
Q ss_pred EEecHHHHHHHHHHHHHHHHhccCCCe----EEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCC
Q 001674 546 LIGDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (1033)
Q Consensus 546 v~gD~~rL~QIL~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (1033)
+.++...|.|++.|||+||++|++.++ |.|.+...+
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~---------------------------------------- 69 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD---------------------------------------- 69 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc----------------------------------------
Confidence 345678899999999999999997643 444442110
Q ss_pred CCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC--CCCCCcccchHHHHHHHHHHcCCE-EEEEEeC
Q 001674 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (1033)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~--s~~~~GtGLGLsI~k~Lv~~mgG~-I~v~S~~ 698 (1033)
.+...+.|+|+|||+||++++++++|++|++.+... ....||+||||++|+.++++|+|. |.+.|.+
T Consensus 70 ----------~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~ 139 (535)
T PRK04184 70 ----------EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISST 139 (535)
T ss_pred ----------CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEec
Confidence 011246799999999999999999999997654322 234578999999999999999997 9999999
Q ss_pred CCce-EEEEEEEeCC
Q 001674 699 NIGS-TFTFTAVFGN 712 (1033)
Q Consensus 699 g~GS-tF~~~lp~~~ 712 (1033)
+.|+ .|+|++++..
T Consensus 140 ~~g~~~~~~~l~id~ 154 (535)
T PRK04184 140 GGSKKAYYFELKIDT 154 (535)
T ss_pred CCCceEEEEEEEecc
Confidence 9998 8999998753
No 67
>PRK11173 two-component response regulator; Provisional
Probab=99.52 E-value=2.1e-13 Score=147.26 Aligned_cols=117 Identities=23% Similarity=0.366 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||.+||+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-ENDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999862
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
+.+|||++|+........+++++|+++|+.||++.++|...+...+..
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999888776543
No 68
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.51 E-value=3e-13 Score=144.31 Aligned_cols=117 Identities=28% Similarity=0.435 Sum_probs=107.8
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+. .+.||+|++|+.||.++|+++++++|+.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~lr~~----------- 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999884 5679999999999999999999999862
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|+..+.+...+++++|++||+.||++.++|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 2368999999999999999999999999999999999999999887654
No 69
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.50 E-value=4.3e-13 Score=143.55 Aligned_cols=116 Identities=28% Similarity=0.471 Sum_probs=106.9
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.|.++.++.++++.+. ...||+|++|+.||.++|+++++.+|+.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~~~~~~g~~~~~~lr~~----------- 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWDIVRMLRSA----------- 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999998874 4679999999999999999999999963
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+.+|||++|+....+...+++++|++||+.||++.++|...+...+.
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 70 -----------NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999999987664
No 70
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.49 E-value=4.9e-13 Score=141.79 Aligned_cols=116 Identities=28% Similarity=0.476 Sum_probs=106.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|+++++.+|..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~----------- 69 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-SGHYSLVVLDLGLPDEDGLHLLRRWRQK----------- 69 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999874 4679999999999999999999999862
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+..+.+...+++++|++||+.||++.++|...+.....
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 70 -----------KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999999887654
No 71
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.49 E-value=6e-13 Score=143.67 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=108.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
..+||||||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~--------- 74 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-RESFHLMVLDLMLPGEDGLSICRRLRSQ--------- 74 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999874 5679999999999999999999999962
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|+..+.+....++++|+++|+.||++.++|...+...+..
T Consensus 75 -------------~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 75 -------------NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred -------------CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999887653
No 72
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.48 E-value=5e-13 Score=142.22 Aligned_cols=115 Identities=26% Similarity=0.372 Sum_probs=105.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||+|||++..+..+...|...|+.|..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-NQHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 47999999999999999999999999999999999999874 4679999999999999999999999862
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
+++|||++|+..+.....+++++|++||+.||++.++|...+...+
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~ 117 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLL 117 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHH
Confidence 2589999999999999999999999999999999999998887654
No 73
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.47 E-value=5.9e-13 Score=144.70 Aligned_cols=114 Identities=20% Similarity=0.379 Sum_probs=101.3
Q ss_pred eEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEeChHHHHHHhCC-CCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eAl~~l~~-~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+||||||++..+..+..+|.. .|+.+. .+.++.+|++.+.. ...||+||+|+.||+|||+++++.|++.
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~-------- 74 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-------- 74 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--------
Confidence 699999999999999999986 477644 78899999987742 3569999999999999999999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|.+
T Consensus 75 --------------~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~ 119 (239)
T PRK10430 75 --------------GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 (239)
T ss_pred --------------CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 236899999999999999999999999999999999999999875
No 74
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.47 E-value=8.3e-14 Score=147.58 Aligned_cols=115 Identities=31% Similarity=0.505 Sum_probs=102.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+|+||||+...-..+..+|++.|..+-.++...+|++.+. .+.||+||+||.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 6999999999999999999999999999999999999994 688999999999999999999999998643
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+|||++|++..-+. .++..-.+||+.||++++.|-++|.|..+.
T Consensus 72 -------------~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 72 -------------AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred -------------cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 589999999865443 445555699999999999999999987654
No 75
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.47 E-value=7.6e-13 Score=143.10 Aligned_cols=116 Identities=23% Similarity=0.297 Sum_probs=106.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.+..+.++.+|+..+. .+.||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-REQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999884 5679999999999999999999999861
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+|||++|+........+++++|++||+.||++.++|...++..+..
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 246999999999999999999999999999999999999999876543
No 76
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.47 E-value=8.4e-13 Score=141.45 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=107.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
++||||||++..+..+...|+..|+.+..+.++.+|++.+. .+.||+|++|+.||.++|+++++.||+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~--------- 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGSGIQFIKHLKRES--------- 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhcc---------
Confidence 57999999999999999999999999999999999999885 46799999999999999999999998631
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
..+.+|||++|+..+.....+++++|+++|+.||++.++|...+.....
T Consensus 73 -----------~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 1246899999999999999999999999999999999999998887654
No 77
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.46 E-value=7.6e-13 Score=143.53 Aligned_cols=115 Identities=19% Similarity=0.353 Sum_probs=103.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||+|||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-SETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999884 5679999999999999999999999851
Q ss_pred ccchhhhcccCCCCCcEEEEccC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTAD-VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~-~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.++|||++|+. .......+++++|+++|+.||++.++|...++..+.
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 25899999985 466777899999999999999999999998877654
No 78
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.46 E-value=9.7e-13 Score=140.83 Aligned_cols=114 Identities=27% Similarity=0.459 Sum_probs=104.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++.||+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l~~~----------- 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKELRQT----------- 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999874 369999999999999999999999862
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
. .+|||++|+..+.....+++++|+++|+.||++.++|...+.....
T Consensus 70 -----------~-~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 70 -----------H-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred -----------C-CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 1 2899999999999999999999999999999999999999987654
No 79
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.46 E-value=1e-12 Score=139.63 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=108.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~g~~~~~~l~~~~--------- 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERGPDLILLDWMLPGTSGIELCRRLRRRP--------- 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-hcCCCEEEEECCCCCCcHHHHHHHHHccc---------
Confidence 57999999999999999999999999999999999999884 46799999999999999999999998631
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+.+|||++|+..+.....+++++|+++|+.||++.++|..++......
T Consensus 73 -----------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 73 -----------ETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred -----------cCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 12468999999999999999999999999999999999999999887643
No 80
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.45 E-value=1.5e-12 Score=138.53 Aligned_cols=116 Identities=26% Similarity=0.454 Sum_probs=106.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||+|||++..+..+...|+..|+.+.++.++.+++..+. ...||+|++|+.||+++|+++++.||+.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 6999999999999999999999999999999999999884 5679999999999999999999999862
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+|||++|+..+.+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 257999999999999999999999999999999999999999886654
No 81
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.45 E-value=1.2e-12 Score=138.58 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=106.3
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~i~~~----------- 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGRDILREWREK----------- 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999874 4679999999999999999999999863
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+.+|||++|+....+...+++++|+++|+.||++.++|..++.....
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 70 -----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999988887654
No 82
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.45 E-value=1.2e-12 Score=139.92 Aligned_cols=117 Identities=26% Similarity=0.345 Sum_probs=105.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCC--CCHHHHHHHHHhhcccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~--mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
++||||||++..+..+...|+..|+.+..+.++.+++..+. ...||++++|+.||. ++|+++++.||..
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~~~g~~~~~~i~~~-------- 71 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-QRLPDLAIIDIGLGEEIDGGFMLCQDLRSL-------- 71 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-hCCCCEEEEECCCCCCCCCHHHHHHHHHhc--------
Confidence 47999999999999999999999999999999999999884 467999999999997 5899999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+....+....++++|+++|+.||++.++|..+++....
T Consensus 72 --------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 72 --------------SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred --------------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999999999988877654
No 83
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.43 E-value=2e-12 Score=142.42 Aligned_cols=119 Identities=26% Similarity=0.332 Sum_probs=104.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||||||++..+..+...|... ++.+ .++.+|.+|++.+. ...||+|++|+.||+|||++++++||+...
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-EQQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 47999999999999999999864 5554 47899999999885 567999999999999999999999997321
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
...+|||++|+........+++++|+++|+.||++.++|...+.++..
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 224799999999999999999999999999999999999999988754
No 84
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.43 E-value=2.5e-12 Score=135.99 Aligned_cols=116 Identities=27% Similarity=0.465 Sum_probs=106.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccc
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
||++||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~------------ 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-KDDYDLIILDVMLPGMDGWQILQTLRRS------------ 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcc------------
Confidence 589999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|+..+.+...+++++|+++|+.||++.++|...+.+.+..
T Consensus 68 ----------~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 68 ----------GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred ----------CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999876544
No 85
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.43 E-value=2.5e-12 Score=119.86 Aligned_cols=109 Identities=48% Similarity=0.716 Sum_probs=92.1
Q ss_pred ecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCC
Q 001674 548 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (1033)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1033)
+|+..|.+++.|++.||+++... +.|.|.+...+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~--------------------------------------------- 35 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDG--------------------------------------------- 35 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcC---------------------------------------------
Confidence 48899999999999999999976 66666653211
Q ss_pred CCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 001674 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706 (1033)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~ 706 (1033)
..+.|.|.|+|.|++++..+++|.+++.... .....++.|+||++|+.+++.|+|++.+.+.++.|++|+|
T Consensus 36 --------~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 106 (111)
T smart00387 36 --------DHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTI 106 (111)
T ss_pred --------CEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 2367999999999999999999999987543 2334567999999999999999999999999899999999
Q ss_pred EEEe
Q 001674 707 TAVF 710 (1033)
Q Consensus 707 ~lp~ 710 (1033)
.+|+
T Consensus 107 ~~~~ 110 (111)
T smart00387 107 TLPL 110 (111)
T ss_pred EeeC
Confidence 9986
No 86
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.41 E-value=4.2e-12 Score=135.19 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.||.++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQLLAF---------- 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999874 5679999999999999999999999963
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|+.........++++|+++|+.||++.++|..++...+..
T Consensus 73 ------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 73 ------------HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred ------------CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 2368999999999999999999999999999999999999988876543
No 87
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.40 E-value=2.8e-12 Score=123.79 Aligned_cols=115 Identities=24% Similarity=0.346 Sum_probs=107.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
+..|||||+....+.+...+++.||.|.++++..||+..++ ...|...+.|+.|-+-+|+++++.||+.
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-t~~PayAvvDlkL~~gsGL~~i~~lr~~---------- 78 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-TAPPAYAVVDLKLGDGSGLAVIEALRER---------- 78 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-cCCCceEEEEeeecCCCchHHHHHHHhc----------
Confidence 46999999999999999999999999999999999999985 5789999999999999999999999984
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.....||++|+++...+..++.+.|+++|+.||-+.+++..++.+-
T Consensus 79 ------------~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 79 ------------RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred ------------CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 3357899999999999999999999999999999999999988765
No 88
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.40 E-value=3.4e-12 Score=136.36 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=103.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCC-E-EEEEeChHHHHHHhCCCCCccEEEEcCCCCC---CCHHHHHHHHHhhccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPE---MDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~-~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~---mdG~ea~~~IR~~e~~~~ 961 (1033)
.+||||||++..+..++.+|+..++ . +..+.++.++++.+. ...||+||+|+.||+ ++|++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~----- 77 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYIKRH----- 77 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH-----
Confidence 4799999999999999999988765 3 667899999999884 467999999999999 5999999999863
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+..+.....+++++|+++|+.||++.++|..+++....
T Consensus 78 -----------------~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 -----------------FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred -----------------CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 346899999999999999999999999999999999999999987654
No 89
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.39 E-value=5.8e-12 Score=135.55 Aligned_cols=116 Identities=31% Similarity=0.455 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||++||++..+..+...|...|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.|++.
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~---------- 75 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-KEQPDLVILDVMMPKLDGYGVCQEIRKE---------- 75 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 47999999999999999999999999999999999999874 4679999999999999999999999851
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
+++|||++|+....+...+++++|+++|+.||++.++|...+.....
T Consensus 76 -------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 76 -------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred -------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 25899999999999999999999999999999999999998877653
No 90
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.38 E-value=7e-12 Score=131.54 Aligned_cols=117 Identities=16% Similarity=0.297 Sum_probs=106.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
+||++||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||.++|+++++.++..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKR---------- 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 699999999999999999999999987 6899999999885 4679999999999999999999999863
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+..|||++|+........+++++|+++|+.||++.++|...++.....
T Consensus 71 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 71 ------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2357899999999999999999999999999999999999999887543
No 91
>PRK14084 two-component response regulator; Provisional
Probab=99.38 E-value=5.2e-12 Score=137.50 Aligned_cols=113 Identities=27% Similarity=0.343 Sum_probs=98.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC-C-EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYG-A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g-~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+|||+||++..+..+..+|+..+ + .+..+.++.+|+..+. .+.||++|+|++||+|||+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-~~~~dlv~lDi~m~~~~G~~~~~~i~~~--------- 71 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-INQYDIIFLDINLMDESGIELAAKIQKM--------- 71 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 69999999999999999999876 4 5778999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
...+|||++|+... ...+++++|+++|+.||++.++|.+++.++.
T Consensus 72 -------------~~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 72 -------------KEPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred -------------CCCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 22468999998754 4668999999999999999999999998864
No 92
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.37 E-value=5.3e-12 Score=150.96 Aligned_cols=116 Identities=27% Similarity=0.371 Sum_probs=107.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+..+|...|+.+..+.++.+|+..+. ...||+||+|+.||++||+++++.||+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-~~~~DlvllD~~lp~~dgl~~l~~ir~~---------- 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-SKTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEECCCCCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999985 5679999999999999999999999862
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+.+|+|++|+....+...+++++|+++|+.||++.++|...+.+.+
T Consensus 73 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 119 (469)
T PRK10923 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 (469)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHH
Confidence 23689999999999999999999999999999999999999887654
No 93
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.37 E-value=6.4e-12 Score=149.73 Aligned_cols=118 Identities=35% Similarity=0.499 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
..+||||||++..+..+...|...|+.+.++.++.+|+..+. ...||+|++|+.||+++|+++++.|++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlillD~~~p~~~g~~ll~~i~~~--------- 73 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-DIHPDVVLMDIRMPEMDGIKALKEMRSH--------- 73 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 458999999999999999999999999999999999999885 5679999999999999999999999862
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+.+|||++|+..+.+...+++++|++||+.||++.++|...+.+.+.
T Consensus 74 -------------~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 74 -------------ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 246899999999999999999999999999999999999999987654
No 94
>PRK15115 response regulator GlrR; Provisional
Probab=99.36 E-value=5.6e-12 Score=149.71 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=107.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++.++..+...|+..|+.|..+.++.+|+..+. ...||+||+|+.||+|||+++++.+++.
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-~~~~dlvilD~~lp~~~g~~ll~~l~~~---------- 74 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-REKVDLVISDLRMDEMDGMQLFAEIQKV---------- 74 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+.+|||++|+....+...+++++|+++|+.||++.++|...+.+...
T Consensus 75 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 75 ------------QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred ------------CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999999987653
No 95
>PRK09483 response regulator; Provisional
Probab=99.36 E-value=1e-11 Score=131.56 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=105.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+|||+||++..+..+...|+.. |+.+. .+.++.+++..+. ...||+|++|+.||+++|+++++.|++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~--------- 72 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-TNAVDVVLMDMNMPGIGGLEATRKILRY--------- 72 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999874 88876 6899999998885 5679999999999999999999999863
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|..........++..|+++|+.||++.++|..++.++...
T Consensus 73 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 73 -------------TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3468999999999999999999999999999999999999999887654
No 96
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.35 E-value=6.2e-12 Score=149.40 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=102.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCC-----CCHHHHHHHHHhhccccccc
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-----MDGFEATKIIREMEHNFNNR 963 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-----mdG~ea~~~IR~~e~~~~~~ 963 (1033)
||||||++.++..+...| .||.|.++.++.+|++.+. ...||+||+|+.||+ |||++++++|++.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~-~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~------- 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR-RHEPAVVTLDLGLPPDADGASEGLAALQQILAI------- 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh-------
Confidence 689999999999999988 7999999999999999985 567999999999996 9999999999863
Q ss_pred ccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 964 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 964 ~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+..+.+...+++++|++||+.||++.++|...|++.+.
T Consensus 71 ---------------~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 ---------------APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ---------------CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 346899999999999999999999999999999999999988876543
No 97
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.35 E-value=1.6e-11 Score=129.07 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=104.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+|||+||++..+..+...|+.. ++.+. .+.++.+++..+. ...||+|++|+.||+++|.++++.++..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~-------- 74 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRIKQI-------- 74 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHh--------
Confidence 47999999999999999999876 57775 6889999998874 5679999999999999999999999862
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+|||++|+........+++++|+++|+.||++.++|..++......
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 75 --------------QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred --------------CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 2358999999999999999999999999999999999999999887654
No 98
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.34 E-value=1.5e-11 Score=128.09 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=101.8
Q ss_pred eEEEEeCCHHHHHHHHHHHhhC-CCE-EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||++..+..+...|... ++. +..+.++.+++..+. .+.||+|++|+.||+++|+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999854 565 567899999999884 567999999999999999999988863
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+|||++|.....+....++++|+++|+.||++.++|..++.+....
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999987654
No 99
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.34 E-value=1.1e-11 Score=134.04 Aligned_cols=113 Identities=24% Similarity=0.290 Sum_probs=96.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCC-E-EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~-~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+|||+||++..+..+..+|+..|. . +..+.++.++++.+. ...||++|+|++||+|||+++++.++..
T Consensus 3 ~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlv~lDi~~~~~~G~~~~~~l~~~--------- 72 (238)
T PRK11697 3 KVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-RLKPDVVFLDIQMPRISGLELVGMLDPE--------- 72 (238)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHhccc---------
Confidence 799999999999999999998883 3 456889999999874 4679999999999999999999988631
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
...+||++|+.. +...++++.|+++|+.||++.++|...+.++..
T Consensus 73 --------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 --------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred --------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 134688999875 456789999999999999999999999988753
No 100
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.34 E-value=6.5e-12 Score=148.96 Aligned_cols=116 Identities=31% Similarity=0.478 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|+..|+.+.++.++.+|+..+. ...||+||+|+.||++||++++++||+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~DlvilD~~m~~~~G~~~~~~ir~~---------- 74 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIATLKEIKAL---------- 74 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999973
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+++|||++|++...+...+++++|+++|+.||++.++|...+.+.+
T Consensus 75 ------------~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l 121 (441)
T PRK10365 75 ------------NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999998887654
No 101
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.33 E-value=2.7e-11 Score=130.34 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|...|+.+..+.++.+|+..+. ...||+|++|+.||.++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 5679999999999999999999999851
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
+.+|||++|+.........++++|+++|+.||++.++|...+...+.
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 25899999999999999999999999999999999999988877654
No 102
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.33 E-value=1.2e-11 Score=141.45 Aligned_cols=114 Identities=28% Similarity=0.350 Sum_probs=98.2
Q ss_pred eEEEEeCCHHHHHHHHHHH-hhCCCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGL-KRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L-~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||++..+..+..+| +..|+.+. .+.++.+|++.+. ...||+|+||++||+|||++++++|++.
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-~~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-AQPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-ccCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 6999999999999999999 46688876 7899999999985 5679999999999999999999999862
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCc--HHHHHHHHHcCCCEEEeCCC---------CHHHHHHHHHhhC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPF---------EAEQLYREVSRFF 1025 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~--~~~~~~~l~aG~ddyl~KP~---------~~~~L~~~v~r~~ 1025 (1033)
.++|||++|+... .+...+|+++|+++|+.||+ ..++|.+.+++..
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 1479999998754 55677899999999999999 6677878777654
No 103
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.32 E-value=1.1e-11 Score=148.03 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=105.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccc
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
||||||++..+..+...|+..|+.|..+.++.+|+..+. ...||+|++|+.||++||+++++.|++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlVllD~~~p~~~g~~ll~~l~~~------------ 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-RGQPDLLITDVRMPGEDGLDLLPQIKKR------------ 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHHh------------
Confidence 689999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+.+|||++|+........+++++|+++|+.||++.++|...+.+.+
T Consensus 68 ----------~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 68 ----------HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred ----------CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 23589999999999999999999999999999999999999988754
No 104
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.32 E-value=9e-12 Score=108.02 Aligned_cols=66 Identities=38% Similarity=0.748 Sum_probs=61.8
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMD-TELDVTQ-QDYVRTAQASGKALVSLINEVLDQAKVESG 501 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~-~~l~~~q-~~~l~~i~~s~~~L~~LIndlLd~skiesg 501 (1033)
+|.+|++++||||||||++|.++++++.+ ...++++ +++++.+..+++++..+++++++++|+|+|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999998 7788887 999999999999999999999999999987
No 105
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.30 E-value=4e-11 Score=127.03 Aligned_cols=116 Identities=32% Similarity=0.494 Sum_probs=105.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||++||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|++.++.++..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~vild~~~~~~~~~~~~~~i~~~----------- 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-SEMYALAVLDINMPGMDGLEVLQRLRKR----------- 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999998874 4679999999999999999999999863
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|.....+...+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 70 -----------GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred -----------CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 235899999999999999999999999999999999999998887654
No 106
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.28 E-value=1.9e-11 Score=142.93 Aligned_cols=111 Identities=24% Similarity=0.381 Sum_probs=86.2
Q ss_pred EEecHHHHHHHHHHHHHHHHhccCC-C---eEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCC
Q 001674 546 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (1033)
Q Consensus 546 v~gD~~rL~QIL~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (1033)
+.+|...|.|++.||++||++|+.. | .|.|.+...
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~----------------------------------------- 60 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI----------------------------------------- 60 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----------------------------------------
Confidence 4568999999999999999999965 3 344443210
Q ss_pred CCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC--CCCCCcccchHHHHHHHHHHcCCE-EEEEEeC
Q 001674 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (1033)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~--s~~~~GtGLGLsI~k~Lv~~mgG~-I~v~S~~ 698 (1033)
+...+.|+|+|+|+||++++++++|++|++.+... ....||.|+||++|+.++++|+|. +.+.|..
T Consensus 61 -----------g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 61 -----------GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred -----------CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 01135799999999999999999999998765432 224578999999999999999999 9999998
Q ss_pred CCceEEEEEEE
Q 001674 699 NIGSTFTFTAV 709 (1033)
Q Consensus 699 g~GStF~~~lp 709 (1033)
+ |+.|..++.
T Consensus 130 ~-g~~~~~~~~ 139 (488)
T TIGR01052 130 G-GEIYVYKMK 139 (488)
T ss_pred C-CceEEEEEE
Confidence 7 666633333
No 107
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.28 E-value=2.9e-11 Score=151.58 Aligned_cols=401 Identities=21% Similarity=0.251 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce
Q 001674 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML-MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504 (1033)
Q Consensus 426 ~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL-~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~ 504 (1033)
.++++..+..++..++..++|..|+|++++++....+ ++..+...+.-.+++..+.+..+..+++.-.+.++...|...
T Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~ 454 (786)
T KOG0519|consen 375 AKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGL 454 (786)
T ss_pred hhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcc
Confidence 3444555566677788888899999999999998844 444444455556677788888899999999999998778777
Q ss_pred eEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHh--ccCCCeE-EEEEEEee
Q 001674 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK--FTEKGHI-FVTVYLVE 581 (1033)
Q Consensus 505 l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiK--fT~~G~I-~v~v~~~~ 581 (1033)
.+...+.+..++.............+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..|+- .+.+....
T Consensus 455 ~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 534 (786)
T KOG0519|consen 455 GESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAEL 534 (786)
T ss_pred cchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecc
Confidence 78888999999999999998888888888888888888888999999999999999999999 8877732 22332210
Q ss_pred cccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccc
Q 001674 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (1033)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (1033)
- .+.+.... +.. . .-|. ...+.....+.+.++|++.|+....++..+..|.
T Consensus 535 ~---~~~vd~~~--------~~~--~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 585 (786)
T KOG0519|consen 535 L---GISVDVSL--------SLS--L--AFWF--------------LDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHK 585 (786)
T ss_pred c---Cccccccc--------cch--h--hhhh--------------cccccccchheEEeeeccccccCCCcchhhhhhh
Confidence 0 00010000 000 0 0000 0011111357899999999999999998888887
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEE-eCCCc----eEEEEEEEeCCCCCCCCccccccccCCCCCCCccc
Q 001674 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-IPNIG----STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736 (1033)
Q Consensus 662 q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S-~~g~G----StF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1033)
+....+++...+.+++++.|++..+.++|.+++.- ..+.. +.+.+..-............. ............+
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~l 664 (786)
T KOG0519|consen 586 SLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGN-PEKLAEPRDSKLL 664 (786)
T ss_pred ccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCC-cccccCccccccc
Confidence 76655555457889999999999999999998752 11110 111111100000000000000 0000111134457
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
+|.++|+||++++.+.|....+..+|..+..+.++.+|+..+. ....+++++.|.+++..+. ......+|+.....
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG---~e~~~~irk~~~~~ 740 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDG---YEATREIRKKERWH 740 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccch---HHHHHHHHHhhcCC
Confidence 8999999999999999999999999999999999999999887 5578999999998877765 34455566544322
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l 862 (1033)
.|.+.+.|+..++ ...+... .|...++.||+....+..++++.+
T Consensus 741 ~pIvAlTa~~~~~-~~~~c~~-~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 741 LPIVALTADADPS-TEEECLE-VGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCEEEEecCCcHH-HHHHHHH-hCCceEEcccccHHHHHHHHHHHh
Confidence 3555555543332 2222222 378899999999999998888765
No 108
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.28 E-value=3.2e-11 Score=144.67 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=87.4
Q ss_pred hccCcEEEEEeCCCCCc-eEEecHHHHHHHHHHHHHHHHhccCCCe----EEEEEEEeecccccchhhhhhccccCcCCC
Q 001674 528 QDKGVELAVYISDRVPE-TLIGDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSG 602 (1033)
Q Consensus 528 ~~k~i~l~~~i~~~~p~-~v~gD~~rL~QIL~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~ 602 (1033)
..+.+.+...+..+.+. .+-.|...|.+++.|||+||++|++.++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~----------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE----------------------- 77 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE-----------------------
Confidence 44677777766654432 1223578899999999999999997654 4444321
Q ss_pred CCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCC----CCCCCCcccchH
Q 001674 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS----ISRTHGGTGIGL 678 (1033)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s----~s~~~~GtGLGL 678 (1033)
+...+.|.|+|||+||++++++++|+||++.+.- .++...|.||||
T Consensus 78 ------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLgl 127 (795)
T PRK14868 78 ------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISA 127 (795)
T ss_pred ------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHH
Confidence 0124679999999999999999999999865421 223345666666
Q ss_pred HHHHHHHHHcCCEEEEEEeCCC-ceEEEEEEEe
Q 001674 679 SISKYLVGRMKGEIGFVSIPNI-GSTFTFTAVF 710 (1033)
Q Consensus 679 sI~k~Lv~~mgG~I~v~S~~g~-GStF~~~lp~ 710 (1033)
++|...+ .+||.|.+.|..+. +..+.+.+..
T Consensus 128 ai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~I 159 (795)
T PRK14868 128 AVLYSQL-TSGKPAKITSRTQGSEEAQYFELII 159 (795)
T ss_pred HHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEE
Confidence 6666665 37888999999754 3333344443
No 109
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.26 E-value=7e-11 Score=136.17 Aligned_cols=114 Identities=25% Similarity=0.363 Sum_probs=96.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||||||++.++..+..+|... |+.+. .+.++.+|+..+. .+.||+|++|+.||.|||++++++|++.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-~~~~DlVllD~~mp~~dgle~l~~i~~~-------- 74 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-KLNPDVITLDVEMPVMDGLDALEKIMRL-------- 74 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-hhCCCEEEEeCCCCCCChHHHHHHHHHh--------
Confidence 48999999999999999999876 88877 8899999999884 5679999999999999999999999862
Q ss_pred cccccchhhhcccCCCCCcEEEEccCC--cHHHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHhh
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADV--IQATYEECLRSGMDGYVSKPFEA---------EQLYREVSRF 1024 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~--~~~~~~~~l~aG~ddyl~KP~~~---------~~L~~~v~r~ 1024 (1033)
. .+|||++|+.. ......+++++|++||+.||++. ++|...++..
T Consensus 75 --------------~-~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~ 130 (354)
T PRK00742 75 --------------R-PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAA 130 (354)
T ss_pred --------------C-CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHH
Confidence 1 28999999753 34667789999999999999953 5566666554
No 110
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.25 E-value=5.9e-11 Score=126.97 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=93.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHH-HHHHhhcccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT-KIIREMEHNFNNRI 964 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~-~~IR~~e~~~~~~~ 964 (1033)
..++++|||+|..+..++..|...--.+..+.++.+|++.+. +||+||||+.||++||++++ +.||..
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~-------- 78 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRK-------- 78 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHh--------
Confidence 357999999999999999999843234557789999998752 39999999999999999997 567763
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~--aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.++++||++|+..+. ...++. +|+++|+.|+.+.++|.++|+.....
T Consensus 79 --------------~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 79 --------------NNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred --------------CCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 346899999998763 345555 59999999999999999999865443
No 111
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.24 E-value=6e-11 Score=126.05 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=89.3
Q ss_pred HHHHHHHHhh---CCCEEEEEeChHHHHHHhCCCCCccEEE---EcCCCCCCCHHHHHHHHHhhcccccccccccccchh
Q 001674 899 LKVAAAGLKR---YGAAVVCVERGKKATELLMPPHQFDACF---MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 899 ~~vl~~~L~~---~g~~v~~a~~g~eAl~~l~~~~~~DlIl---mDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
|..+..+|.+ .|+.+.++.++.++++.+. ...||+++ +|+.||+|||++++++||+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~---------------- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-RISFSAVIFSLSAMRSERREGLSCLTELAIK---------------- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-cCCCCEEEeeccccCCCCCCHHHHHHHHHHH----------------
Confidence 5667788865 5777789999999999885 56789998 78899999999999999873
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 973 AYENVSNFHVPILAMTADVIQATYEECL-RSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l-~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+|||++|+..+.....+++ ++|+++|+.||.+.++|..+|+..+..
T Consensus 66 ------~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 66 ------FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 3468999999988777666655 799999999999999999999986554
No 112
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.24 E-value=8.2e-11 Score=121.97 Aligned_cols=118 Identities=24% Similarity=0.351 Sum_probs=106.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+.+||||||++..+..+...|...|+.+..+.++.+++..+. .+.||++++|+.||.++|+++++.|++.
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~ii~d~~~~~~~~~~~~~~l~~~--------- 72 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-GLRFGCVVTDVRMPGIDGIELLRRLKAR--------- 72 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-cCCCCEEEEeCCCCCCcHHHHHHHHHhc---------
Confidence 357999999999999999999999999999999999998874 5679999999999999999999999862
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+.........++++|+++|+.||++.++|...+.....
T Consensus 73 -------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 73 -------------GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred -------------CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999888876543
No 113
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.22 E-value=1.4e-10 Score=137.27 Aligned_cols=117 Identities=28% Similarity=0.428 Sum_probs=106.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|...|+.+.++.++.+++..+. ...||+|++|+.||+++|+++++.||+..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~l~~~i~~~~---------- 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-REQPDIILLDVMMPGMDGFEVCRRLKSDP---------- 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 7999999999999999999999999999999999999885 56799999999999999999999998631
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
..+.+|||++|+....+...+++++|+++|+.||++.++|..++.+..
T Consensus 73 ----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 120 (457)
T PRK09581 73 ----------ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred ----------ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999998887653
No 114
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.22 E-value=1.2e-10 Score=106.74 Aligned_cols=101 Identities=46% Similarity=0.594 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhccC--CCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCC
Q 001674 553 FRQIITNLMGNSIKFTE--KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 630 (1033)
Q Consensus 553 L~QIL~NLl~NAiKfT~--~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1033)
|.+++.+|++||++|.. .+.|.|.+...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~-------------------------------------------------- 30 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD-------------------------------------------------- 30 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec--------------------------------------------------
Confidence 46899999999999997 45555544311
Q ss_pred CCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001674 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (1033)
Q Consensus 631 ~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~l 708 (1033)
...+.|.|.|+|.|+++..++++|.+|.. .......++.|+||++|+++++.|||++.+.+..+.|++|++++
T Consensus 31 ---~~~~~v~i~d~g~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 31 ---GDHLEIRVEDNGPGIPEEDLERIFERFSD--GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred ---CCEEEEEEEeCCCCCCHHHHHHHhhhhhc--CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 12467999999999999999999998821 12223446899999999999999999999999988999998863
No 115
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.21 E-value=7.5e-11 Score=141.65 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=87.9
Q ss_pred EecHHHH---HHHHHHHHHHHHhccCCC----eEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCcccccc
Q 001674 547 IGDPGRF---RQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619 (1033)
Q Consensus 547 ~gD~~rL---~QIL~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 619 (1033)
.|++..+ .+|+.||++||++|+..+ .|.|.+...
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~--------------------------------------- 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL--------------------------------------- 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC---------------------------------------
Confidence 4454555 499999999999998653 455544210
Q ss_pred CCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC--CCCCCcccchHHHHHHHHHHc-CCEEEEEE
Q 001674 620 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRM-KGEIGFVS 696 (1033)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~--s~~~~GtGLGLsI~k~Lv~~m-gG~I~v~S 696 (1033)
+...+.|+|+|+|+|||++.++++|++|+..+.-. ....|+.|+||+++..+.+++ ||.+.+.|
T Consensus 69 -------------g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S 135 (659)
T PRK14867 69 -------------GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITT 135 (659)
T ss_pred -------------CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEE
Confidence 11246799999999999999999999998644321 134578999999999999886 56699999
Q ss_pred eCCCceEEEEEEEeCC
Q 001674 697 IPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 697 ~~g~GStF~~~lp~~~ 712 (1033)
.++.|++|++.+|+..
T Consensus 136 ~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 136 STGDGKIHEMEIKMSV 151 (659)
T ss_pred EcCCCEEEEEEEEEEe
Confidence 9999999999998854
No 116
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.20 E-value=7.5e-11 Score=131.73 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=90.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC--CEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g--~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||....|++++.+|...| ..|-++.||.+|++++. +..||+|.||+.||.|||++++++|-+.
T Consensus 3 rVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~-~~~PDVi~ld~emp~mdgl~~l~~im~~--------- 72 (350)
T COG2201 3 RVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK-KLKPDVITLDVEMPVMDGLEALRKIMRL--------- 72 (350)
T ss_pred EEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH-hcCCCEEEEecccccccHHHHHHHHhcC---------
Confidence 79999999999999999999998 56678999999999995 5789999999999999999999999752
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCc--HHHHHHHHHcCCCEEEeCCCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFE 1013 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~--~~~~~~~l~aG~ddyl~KP~~ 1013 (1033)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 --------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 --------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred --------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 3589999887444 466778999999999999985
No 117
>PRK13435 response regulator; Provisional
Probab=99.19 E-value=3.3e-10 Score=112.82 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=97.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCC-CCCHHHHHHHHHhhccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 963 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP-~mdG~ea~~~IR~~e~~~~~~ 963 (1033)
..+|||+||++.....+...|+..|+.+. ++.++.++++.+. ...||+|++|+.|+ .++|.+..+.+++.
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-RRQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-hcCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999877 7899999998874 45799999999998 59999999988751
Q ss_pred ccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 964 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 964 ~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.++|||+++.... ...++.+|+++|+.||++.++|.+.|.++..
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2589999997643 3567889999999999999999999988754
No 118
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.18 E-value=1.9e-10 Score=114.03 Aligned_cols=98 Identities=14% Similarity=0.297 Sum_probs=76.5
Q ss_pred ecHHHHHHHHHHHHHHHHhccC----CCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCC
Q 001674 548 GDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (1033)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (1033)
.|...+.+++.|+++||++|+- .|.|.|++...
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~------------------------------------------- 71 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIE------------------------------------------- 71 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe-------------------------------------------
Confidence 3667899999999999999852 35566655321
Q ss_pred CCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceE
Q 001674 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703 (1033)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GSt 703 (1033)
...+.++|.|+|.||++ .+++|+||+..++ ..+|+|+||++++++ .+++.++|.++.||+
T Consensus 72 ----------~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~ 131 (137)
T TIGR01925 72 ----------DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTK 131 (137)
T ss_pred ----------CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeE
Confidence 11478999999999983 6789999986432 235899999998874 579999999999999
Q ss_pred EEEEE
Q 001674 704 FTFTA 708 (1033)
Q Consensus 704 F~~~l 708 (1033)
|+++.
T Consensus 132 v~i~~ 136 (137)
T TIGR01925 132 IIMKK 136 (137)
T ss_pred EEEEe
Confidence 99863
No 119
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-10 Score=117.91 Aligned_cols=112 Identities=28% Similarity=0.373 Sum_probs=95.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEE-EEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
.++|++||++.++..+...|...||.+ .++.++.++.+... .+.||+||||+.||.-|-.+. ..+.+
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~-~~~~~---------- 73 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEA-LLLAS---------- 73 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHH-HHHhh----------
Confidence 589999999999999999999999965 47889999988874 688999999999999993332 22222
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 1022 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1022 (1033)
.+...|||++|++.+.+..+.+.++|+.+||.||++...|+-.+.
T Consensus 74 ------------~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 74 ------------ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred ------------cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 133579999999999999999999999999999999998876654
No 120
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.17 E-value=5.1e-10 Score=117.81 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=104.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~l~~~~~~~~~~~l~~~-------- 77 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREK-------- 77 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 48999999999999999999875 5654 46889999999884 4679999999999999999999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|+|++++.........++++|+++|+.||++.++|...+.+....
T Consensus 78 --------------~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 78 --------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999987654
No 121
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.16 E-value=5.6e-10 Score=116.39 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=103.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+|||+||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~-------- 74 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQLHQR-------- 74 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH--------
Confidence 47999999999999999999876 4664 47889999998774 5679999999999999999999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|+|++|+.........++++|+++|+.||++.++|...+..+...
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 75 --------------WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999876543
No 122
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.16 E-value=2e-10 Score=143.46 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=101.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++.++..+..+|...|+.|..+.++.+|+..+. ...||+|++|+.||+|+|++++++||..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l~~~---------- 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAVRQT---------- 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHHHhc----------
Confidence 47999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHH--HHHHHHHhh
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE--QLYREVSRF 1024 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~--~L~~~v~r~ 1024 (1033)
.+.+|||++|+..+.+...+++++|+++|+.||.+.. .+..++.+.
T Consensus 77 ------------~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~ 124 (665)
T PRK13558 77 ------------TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESA 124 (665)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHh
Confidence 2368999999999999999999999999999998653 555555543
No 123
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.15 E-value=1.2e-09 Score=103.30 Aligned_cols=119 Identities=32% Similarity=0.451 Sum_probs=104.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCC-EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
.+||++|+++.....+...|...|+ .+.++.++.+++..+. ...||++++|..+|.++|++..+.+++..
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~~~~-------- 76 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIRADG-------- 76 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHHhCC--------
Confidence 4799999999999999999999998 4778999999998874 46799999999999999999999998631
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
..+++|+++++.........+++++|+++|+.||++.++|...+.+.+.
T Consensus 77 ------------~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 77 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred ------------CcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1235799999998888888999999999999999999999999887653
No 124
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.15 E-value=6.7e-10 Score=116.68 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=102.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+|||+||++..+..+...|+. .++.+. .+.++.+++..+. ...||+|++|..||.++|+++++.+++.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~~~~~~~~l~~~-------- 77 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-RLDPDVILLDLNMKGMSGLDTLNALRRD-------- 77 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 4799999999999999999975 577775 6889999998874 4679999999999999999999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|++++|..........++++|+++|+.||++.++|...+.+...
T Consensus 78 --------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 78 --------------GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred --------------CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 235789999999888899999999999999999999999999987543
No 125
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.12 E-value=4.1e-09 Score=110.98 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 001674 84 WWRKVLITWLLFWTL--VSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAID 161 (1033)
Q Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id 161 (1033)
...-+|+..+-++++ .++.++...+...+++.|+...+..--.-.-|..|+|.++..|+.|+....+ .|++.
T Consensus 14 ~~s~~LPali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~~e~------~P~~~ 87 (297)
T COG3452 14 LKSNYLPALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKHWET------EPDMP 87 (297)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhheec------CCCch
Confidence 334444444333332 2333333333444444444444444444444455555555556666666555 56699
Q ss_pred HHHHHHHHHHhhhhCCCceeeeeeeccCcchHHHHHHHhCceeeeecccccCCCCCCCCCCCCcceeeeEeeeCCCceEE
Q 001674 162 QMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVI 241 (1033)
Q Consensus 162 ~~~f~~~t~~~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~ 241 (1033)
|+.|+.-+...+..+.+.+.++=+|.. . .--.||.+.|..++
T Consensus 88 Q~qw~~lA~a~~e~~~~lr~I~vaP~~--------------V------------------------V~~~yPl~~neaa~ 129 (297)
T COG3452 88 QQQWELLARAVFEDYDGLRNIAVAPSL--------------V------------------------VARVYPLPGNEAAI 129 (297)
T ss_pred HHHhHHHHHHHhhccccceeeccCccc--------------E------------------------EEEEeecCCChhhc
Confidence 999998776665555655555422211 0 11278899999999
Q ss_pred eeccCCCcccHHHHHHHHHcCCceeecceeecccCCceEEEEEeeeccCCCCCCChhHHHHhhcceeeeeeeHHHHHHHH
Q 001674 242 SLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 321 (1033)
Q Consensus 242 g~D~~s~~~~~~~i~~Ar~tg~~~~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~~ 321 (1033)
|+|+..+|.-+.++.+||+.++.++|+|+.|+| ++-|++..+|++-.. +. -+.++|+|.++||++.|.+..
T Consensus 130 gLDYrk~pqQ~~s~~~A~~~k~tvvsGpVDL~Q-GgRgfi~rvPlf~gp--~~------~dRFwGvVs~V~dvDqL~~s~ 200 (297)
T COG3452 130 GLDYRKNPQQRQSTSRARRQKETVVSGPVDLVQ-GGRGFIGRVPLFMGP--PG------GDRFWGVVSGVFDVDQLYESV 200 (297)
T ss_pred CcchhcCHHHHHHHHHHHhhcceEEecceeecc-CCceEEEEEeeeeCC--CC------CCccceEEEEEEEHHHHHHHh
Confidence 999999999999999999999999999999997 567999999998642 11 245789999999999998875
No 126
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.10 E-value=8.9e-10 Score=117.33 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=95.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCC---EEEEEeChHHHHHHhCCCCCccEEEEcCC--CCCCCHHHHHHHHHhhcccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHNFNN 962 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~---~v~~a~~g~eAl~~l~~~~~~DlIlmDi~--MP~mdG~ea~~~IR~~e~~~~~ 962 (1033)
.||||||++..+..++.+|...++ .+..+.++.+++..+. ...||+|+||+. ||.+||.+++++|++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~------ 74 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQIINQ------ 74 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHHHHH------
Confidence 489999999999999999987653 4457899999999874 567999999976 8889999999999863
Q ss_pred cccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHhhCCC
Q 001674 963 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG-YVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 963 ~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~dd-yl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+|||++|+..+..... ++..|.+. |+.|+.+.++|.++++.....
T Consensus 75 ----------------~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 75 ----------------HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred ----------------CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 3468999999987765543 55566655 899999999999999876543
No 127
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.09 E-value=1e-08 Score=125.98 Aligned_cols=140 Identities=25% Similarity=0.425 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhhhh--ccCcEEEEEeCCCCCceEEecHHHHHHH---HHHHHHHHHhcc-------------CCCeEE
Q 001674 513 RAILDDVLSLFSGKSQ--DKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHIF 574 (1033)
Q Consensus 513 ~~ll~~v~~~~~~~a~--~k~i~l~~~i~~~~p~~v~gD~~rL~QI---L~NLl~NAiKfT-------------~~G~I~ 574 (1033)
..++...-...+..+. .|.++|.+.-.+ ...|+.-|.++ |++||.||+.|. +.|.|.
T Consensus 393 ~~vf~RfpR~VRdla~~lgK~V~L~ieG~~-----telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 393 EQVFSRFPRMVRDLARKLGKQVELVIEGED-----TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred HHHHhhccHHHHHHHHHhCCeeEEEEecCC-----eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 3444433333333443 456666654222 34588888887 899999999995 136665
Q ss_pred EEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhH-
Q 001674 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ- 653 (1033)
Q Consensus 575 v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~- 653 (1033)
++..- ...++.|+|+|+|.||+.+.+
T Consensus 468 L~A~~-----------------------------------------------------~gn~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 468 LSAYH-----------------------------------------------------EGNNIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred EEEEc-----------------------------------------------------CCCeEEEEEeeCCCCCCHHHHH
Confidence 55431 223578999999999998742
Q ss_pred -----------------------hhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 654 -----------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 654 -----------------------~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
+-||.|-|.+....+ .-+|-|.||=+||+-++.+||+|.++|++|+||+|++.||+
T Consensus 495 ~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~Vt-dvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPL 573 (716)
T COG0643 495 EKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQVT-DVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL 573 (716)
T ss_pred HHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhhh-cccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCc
Confidence 348999664433322 45799999999999999999999999999999999999998
Q ss_pred C
Q 001674 711 G 711 (1033)
Q Consensus 711 ~ 711 (1033)
.
T Consensus 574 T 574 (716)
T COG0643 574 T 574 (716)
T ss_pred H
Confidence 5
No 128
>PRK03660 anti-sigma F factor; Provisional
Probab=99.08 E-value=1.2e-09 Score=109.59 Aligned_cols=101 Identities=19% Similarity=0.359 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001674 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
|...+.+++.|++.||++|... |.|.|++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-------------------------------------------- 71 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-------------------------------------------- 71 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--------------------------------------------
Confidence 6778999999999999998632 4555554311
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001674 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
...+.++|.|+|.||++ ..+.|+||++.+. ...++|+||+|+++ +.+++.+++.++.||+|
T Consensus 72 ---------~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~ 132 (146)
T PRK03660 72 ---------EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTVMES----FMDEVEVESEPGKGTTV 132 (146)
T ss_pred ---------CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHHHHH----hCCeEEEEecCCCcEEE
Confidence 11478999999999986 6689999986433 12478999999875 45689999999999999
Q ss_pred EEEEEeCC
Q 001674 705 TFTAVFGN 712 (1033)
Q Consensus 705 ~~~lp~~~ 712 (1033)
+++.++..
T Consensus 133 ~i~~~~~~ 140 (146)
T PRK03660 133 RMKKYLKK 140 (146)
T ss_pred EEEEEecc
Confidence 99998854
No 129
>PRK09191 two-component response regulator; Provisional
Probab=99.07 E-value=1.5e-09 Score=119.10 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=98.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCC-CCHHHHHHHHHhhccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNR 963 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG~ea~~~IR~~e~~~~~~ 963 (1033)
..+|||+||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||+ ++|+++++.++..
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-~~~~dlvi~d~~~~~~~~g~e~l~~l~~~------- 208 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-KTRPGLILADIQLADGSSGIDAVNDILKT------- 208 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-ccCCCEEEEecCCCCCCCHHHHHHHHHHh-------
Confidence 35799999999999999999999999887 7889999999885 467999999999995 8999999999862
Q ss_pred ccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 964 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 964 ~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
. ++|||++|+....... +...|+++|+.||++.++|...|.+....
T Consensus 209 ---------------~-~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 209 ---------------F-DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred ---------------C-CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 2 5899999997665433 44567889999999999999999886543
No 130
>PRK10693 response regulator of RpoS; Provisional
Probab=99.00 E-value=1.7e-09 Score=122.06 Aligned_cols=89 Identities=27% Similarity=0.357 Sum_probs=78.9
Q ss_pred EEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHH
Q 001674 915 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 994 (1033)
Q Consensus 915 ~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~ 994 (1033)
++.++.+|++.+. ...||+|++|+.||+|||++++++||+. .+.+|||++|+....+
T Consensus 2 ~a~~g~~al~~l~-~~~pDlVL~D~~mp~~~Gle~~~~ir~~----------------------~~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLG-GFTPDLIICDLAMPRMNGIEFVEHLRNR----------------------GDQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc----------------------CCCCcEEEEECCCCHH
Confidence 5789999999885 4679999999999999999999999963 2358999999999999
Q ss_pred HHHHHHHcCCCEEEeCCC-CHHHHHHHHHhhCC
Q 001674 995 TYEECLRSGMDGYVSKPF-EAEQLYREVSRFFP 1026 (1033)
Q Consensus 995 ~~~~~l~aG~ddyl~KP~-~~~~L~~~v~r~~~ 1026 (1033)
...+++++|++||+.||+ +.++|...+.+.+.
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 999999999999999999 58999888877653
No 131
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.99 E-value=2.2e-07 Score=107.67 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=86.4
Q ss_pred HHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCC
Q 001674 522 LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601 (1033)
Q Consensus 522 ~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~ 601 (1033)
........-++.+........+..-..-..-+-+|+.--++||+||+..-++.|++...+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~-------------------- 308 (365)
T COG4585 249 LLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTD-------------------- 308 (365)
T ss_pred HHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcC--------------------
Confidence 333333444555555443211111113456788999999999999998888877765321
Q ss_pred CCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHH
Q 001674 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSIS 681 (1033)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~ 681 (1033)
..++++|.|+|.|.+++.. +.|+||.=.
T Consensus 309 ---------------------------------~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~m 336 (365)
T COG4585 309 ---------------------------------DELRLEVIDNGVGFDPDKE-------------------GGGFGLLGM 336 (365)
T ss_pred ---------------------------------CEEEEEEEECCcCCCcccc-------------------CCCcchhhH
Confidence 2478999999999886521 168999999
Q ss_pred HHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001674 682 KYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 682 k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
|+=|+.+||++.+.|.+|+||++++++|+
T Consensus 337 reRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 337 RERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred HHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 99999999999999999999999999984
No 132
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.99 E-value=2.4e-07 Score=101.38 Aligned_cols=189 Identities=13% Similarity=0.245 Sum_probs=137.7
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
.+.+...-+-.||-.-+++|..-+.++++...++..+.....|+.-+.++-.-+..+|..-|-- ...+..+.+.
T Consensus 302 iRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP~------~LDdL~l~qa 375 (497)
T COG3851 302 IRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRPR------QLDDLTLEQA 375 (497)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccccHHHH
Confidence 3445555566788888999998888887765555556666667766666666666666544321 1234567888
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecH---HHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhh
Q 001674 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~---~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
+..++..+. ..++||...++...+.. .-|+ --+.++...+++|-+||.+...|++..+..++
T Consensus 376 i~~l~~Em~--~~ergihcq~~~~~n~~---~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e---------- 440 (497)
T COG3851 376 IRSLLREME--LEERGIHCQLDWRINET---ALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE---------- 440 (497)
T ss_pred HHHHHHHhh--hhhcCeEEEeccccCcc---cCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc----------
Confidence 888888775 45778877776543211 1122 23778999999999999999888887764322
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001674 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
.+.++|+|+|+|+|+.. +
T Consensus 441 -------------------------------------------~l~Lei~DdG~Gl~~~~-------------------~ 458 (497)
T COG3851 441 -------------------------------------------RLMLEIEDDGSGLPPGS-------------------G 458 (497)
T ss_pred -------------------------------------------EEEEEEecCCcCCCCCC-------------------C
Confidence 36799999999999641 3
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 001674 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp 709 (1033)
-+|.||.=.++=|.++||++.++| ..||...+++|
T Consensus 459 v~G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 459 VQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred ccCcCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 468999999999999999999999 67999999998
No 133
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.98 E-value=6.2e-09 Score=94.09 Aligned_cols=112 Identities=35% Similarity=0.523 Sum_probs=100.0
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccccc
Q 001674 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 890 LIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
|++|+++..+..+...++..|+.+..+.++.+++..+. .+.||++++|..++..+|++..+.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~l~~~------------- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLELLRRIRKR------------- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-hCCCCEEEEecCCCCCchHHHHHHHHHh-------------
Confidence 57899999999999999999999999999999998874 4679999999999999999999999863
Q ss_pred chhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001674 970 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.+.+|+++++.........+++..|+++|+.||++.++|...+.+.
T Consensus 67 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ---------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ---------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2357999999888788888999999999999999999999988764
No 134
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.87 E-value=9.7e-07 Score=94.78 Aligned_cols=194 Identities=22% Similarity=0.307 Sum_probs=131.8
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
.|..++.=+.|-++|-|..|..++.+-.....++ ..++++..+.-... +.++.+.|--+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~s-la~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQS-LALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHH-HHHHHHHHhcC---------CcceEcHHHH
Confidence 4667888899999999999999988765544443 33344333333332 23445554433 1234677788
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHHhcc----CCCeEEEEEEEeecccccchhh
Q 001674 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVE 590 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD-~~rL~QIL~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~i~i~ 590 (1033)
++.+...+.+....+.+.+.....+.+ .+-.| ..-|--|+.-|+.||+||. +.|.|.|+++..+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 887777776654556677776655432 22222 3457889999999999996 35777776653211
Q ss_pred hhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCC
Q 001674 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (1033)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~ 670 (1033)
.....+.|.|+|.|+|.+. ++
T Consensus 157 -------------------------------------------~~~~~l~v~deg~G~~~~~------~~---------- 177 (221)
T COG3920 157 -------------------------------------------GGRFLLTVWDEGGGPPVEA------PL---------- 177 (221)
T ss_pred -------------------------------------------CCeEEEEEEECCCCCCCCC------CC----------
Confidence 0035688999999999752 11
Q ss_pred CCcccchHHHHHHHH-HHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001674 671 HGGTGIGLSISKYLV-GRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 671 ~~GtGLGLsI~k~Lv-~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
...|+|+.+++.+| ++.||.+...+.. ||+|++++|...
T Consensus 178 -~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 -SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred -CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24699999999999 8999999887765 999999998753
No 135
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.79 E-value=2e-06 Score=99.42 Aligned_cols=184 Identities=23% Similarity=0.342 Sum_probs=128.4
Q ss_pred HHhHHhhHHHHHHHHHHHH----HHhc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001674 442 ATVSHEIRTPMNGVLGMLD----MLMD---TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 442 a~vSHELRTPLn~I~g~le----lL~~---~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
++|+-||---|.-.+.++. +|.. ....++.++.+..+....+.--.-+.++|.--|+ ...+-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 4566777777666666654 3332 1233445666666666666555666677665543 223456778
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHH---HHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhh
Q 001674 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG---RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 591 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~---rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~ 591 (1033)
-++++++.|+.. .++.+.+++. .|... -|+. .+-||+.-=++||+||+...+|.|+++...
T Consensus 447 AL~~~~~~f~~q---tg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~---------- 510 (574)
T COG3850 447 ALEQMLAEFSNQ---TGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND---------- 510 (574)
T ss_pred HHHHHHHHHHhc---cCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC----------
Confidence 888888887654 4666665543 33322 2433 466888899999999998888888875321
Q ss_pred hhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCC
Q 001674 592 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671 (1033)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~ 671 (1033)
..+.+.|+|+|+|||+.. .+
T Consensus 511 -------------------------------------------g~~~~~VeDnG~Gi~~~~-----------e~------ 530 (574)
T COG3850 511 -------------------------------------------GQVTLTVEDNGVGIDEAA-----------EP------ 530 (574)
T ss_pred -------------------------------------------CeEEEEEeeCCcCCCCcc-----------CC------
Confidence 246799999999999761 11
Q ss_pred CcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 001674 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (1033)
Q Consensus 672 ~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp 709 (1033)
+| =-||.|.+.=++.+||.+.+++.+|+||++.+++|
T Consensus 531 ~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 531 SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred CC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 23 56899999999999999999999999999999986
No 136
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.75 E-value=1e-07 Score=97.51 Aligned_cols=103 Identities=18% Similarity=0.272 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001674 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
|...++.++..++.||++|... |.|.|++...
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~-------------------------------------------- 74 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY-------------------------------------------- 74 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE--------------------------------------------
Confidence 5667889999999999999853 4566655421
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001674 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
...+.|.|+|+|+|++++.....|.||+...+.. ...+.|+||.++++|++. +.+.+ ..|++|
T Consensus 75 ---------~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v 137 (161)
T PRK04069 75 ---------EDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTV 137 (161)
T ss_pred ---------CCEEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEE
Confidence 1257899999999999999999999988654322 234679999999999986 66665 468999
Q ss_pred EEEEEeCC
Q 001674 705 TFTAVFGN 712 (1033)
Q Consensus 705 ~~~lp~~~ 712 (1033)
+++-.+..
T Consensus 138 ~~~k~~~~ 145 (161)
T PRK04069 138 SMTKYINR 145 (161)
T ss_pred EEEEEcCc
Confidence 99876644
No 137
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.74 E-value=4.7e-06 Score=99.56 Aligned_cols=65 Identities=28% Similarity=0.282 Sum_probs=54.9
Q ss_pred eEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc-ccchHHHHHHHHHHcCCE--EEEEEeCCCceEEEEEEEeC
Q 001674 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG-TGIGLSISKYLVGRMKGE--IGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G-tGLGLsI~k~Lv~~mgG~--I~v~S~~g~GStF~~~lp~~ 711 (1033)
.+.++|.|+|+||+++....+.+.- ++ .|+||+=+++.++.+-|. +.++|.+++||+..+++|..
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 5789999999999998876654321 12 599999999999999998 58999999999999999864
No 138
>PRK15029 arginine decarboxylase; Provisional
Probab=98.69 E-value=6.5e-08 Score=119.48 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=84.7
Q ss_pred eEEEEeCCHH--------HHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHH----HHHHHHHh
Q 001674 888 KILIVDDNNV--------NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF----EATKIIRE 955 (1033)
Q Consensus 888 ~ILIVDDn~~--------n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~----ea~~~IR~ 955 (1033)
+||||||+.. .++.++..|+..||+|..+.++.+|++.+.....||+|++|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 69999999999999999999999999998543579999999999999998 89999996
Q ss_pred hcccccccccccccchhhhcccCCCCCcEEEEccCCc--HHHHHHHHHcCCCEEEeCCCCHHH
Q 001674 956 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFEAEQ 1016 (1033)
Q Consensus 956 ~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~--~~~~~~~l~aG~ddyl~KP~~~~~ 1016 (1033)
. ...+|||++|+..+ ...-...+ --+++|+-+--+..+
T Consensus 82 ~----------------------~~~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 R----------------------QQNVPVFLLGDREKALAAMDRDLL-ELVDEFAWILEDTAD 121 (755)
T ss_pred h----------------------CCCCCEEEEEcCCcccccCCHHHH-HhhheEEEecCCCHH
Confidence 2 23699999999886 22222222 124677777665444
No 139
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=1.4e-07 Score=102.88 Aligned_cols=112 Identities=29% Similarity=0.362 Sum_probs=93.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC-CE-EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g-~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+|+++||++..+..+..++.... ++ +..+.++.++++.+.. ..+|++|+||+||.|+|+++.++||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-LRPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-cCCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 69999999999999999998422 22 2368899999999864 5899999999999999999999999742
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
+..+|+++|++.. ....+++..+-||+.||++.+.|...+.+.
T Consensus 74 --------------~~~~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 74 --------------PRPAIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred --------------CCCeEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 3478999998754 444566788899999999999999999764
No 140
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.57 E-value=1.6e-05 Score=90.61 Aligned_cols=129 Identities=22% Similarity=0.343 Sum_probs=91.9
Q ss_pred EeecHHHHHHHHHHHHHhhhh--ccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhcc-----CCCeEEEEEEEe
Q 001674 508 VSFNLRAILDDVLSLFSGKSQ--DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-----EKGHIFVTVYLV 580 (1033)
Q Consensus 508 ~~~dL~~ll~~v~~~~~~~a~--~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT-----~~G~I~v~v~~~ 580 (1033)
..+.|.+-++.+-...+-+-. ...+++.+++++.+-.. .=|. -++.-|+.|||||. +.|.|.|+|...
T Consensus 415 ~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~--~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~~ 489 (557)
T COG3275 415 EIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV--QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEKE 489 (557)
T ss_pred eEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhc--cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEEe
Confidence 457788888877766553322 22345555555433211 0112 35667899999996 347777777532
Q ss_pred ecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcc
Q 001674 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (1033)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (1033)
+ ..+++.|+|+|-||+++
T Consensus 490 d-----------------------------------------------------~~l~i~VeDng~li~p~--------- 507 (557)
T COG3275 490 D-----------------------------------------------------ADLRIEVEDNGGLIQPD--------- 507 (557)
T ss_pred C-----------------------------------------------------CeEEEEEecCCCCcCCC---------
Confidence 1 23789999999999986
Q ss_pred cccCCCCCCCCCcccchHHHHHHHHHHcCC---EEEEEEeCCCceEEEEEEEeCC
Q 001674 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKG---EIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 661 ~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG---~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
...|+|+||+.+.+=++.+=| -+.++|.+..||+++|.+|+..
T Consensus 508 ---------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 ---------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred ---------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 124899999999999998888 7999999999999999999854
No 141
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.51 E-value=4.3e-07 Score=76.49 Aligned_cols=64 Identities=44% Similarity=0.760 Sum_probs=57.3
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001674 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 437 Ks~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
+.+|++.++|||||||++|.++++++.+...+++..++++.+..+++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4679999999999999999999999887666666688999999999999999999999999765
No 142
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.48 E-value=1.4e-06 Score=88.81 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001674 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
+...+.-++..++.||++|+.. |.|.|.+...+
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~------------------------------------------- 75 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYE------------------------------------------- 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeC-------------------------------------------
Confidence 3446888999999999999843 56666654211
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001674 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
..+.+.|+|+|.|++++..+..|.|++..++.. ...+.|+||.|+++|++ ++.+.+ +.|+++
T Consensus 76 ----------~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l 137 (159)
T TIGR01924 76 ----------DRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTV 137 (159)
T ss_pred ----------CEEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEE
Confidence 247899999999999999988898876543322 23467999999999998 677776 467888
Q ss_pred EEEEEeC
Q 001674 705 TFTAVFG 711 (1033)
Q Consensus 705 ~~~lp~~ 711 (1033)
.++..+.
T Consensus 138 ~l~k~~~ 144 (159)
T TIGR01924 138 AMTKYLN 144 (159)
T ss_pred EEEEEEc
Confidence 8876553
No 143
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.38 E-value=3.5e-05 Score=85.71 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce------eEeEeecHHHHHHHHHHHHHhhhhccCc---EEEEEeCCCC
Q 001674 472 QDYVRTAQASGKALVSLINEVLDQAKVESGKLE------LEAVSFNLRAILDDVLSLFSGKSQDKGV---ELAVYISDRV 542 (1033)
Q Consensus 472 ~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~------l~~~~~dL~~ll~~v~~~~~~~a~~k~i---~l~~~i~~~~ 542 (1033)
+.+++.-..+=-.+.-|+|+=+-+-- +|+-+ .-...+++.++++++.+..+..+..+=+ ++.+.-+...
T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 174 QYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 34455544443334445555443332 34332 1123578999999999888877765543 3444333333
Q ss_pred CceEEecHHHHHHHHHHHHHHHHhccC-----CCe----EEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccC
Q 001674 543 PETLIGDPGRFRQIITNLMGNSIKFTE-----KGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 613 (1033)
Q Consensus 543 p~~v~gD~~rL~QIL~NLl~NAiKfT~-----~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~ 613 (1033)
...| .=|.-|..++.-|+.||.++|= .|. |.|.|..
T Consensus 252 ~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~---------------------------------- 296 (414)
T KOG0787|consen 252 SFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK---------------------------------- 296 (414)
T ss_pred cCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec----------------------------------
Confidence 3221 3478899999999999999982 232 3333321
Q ss_pred ccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC------CCCCCcccchHHHHHHHHHH
Q 001674 614 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGR 687 (1033)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~------s~~~~GtGLGLsI~k~Lv~~ 687 (1033)
+...+.|.|+|.|-||+.+..+++|.=-|...+.. ...-.|.|-||.|||...+.
T Consensus 297 -------------------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~y 357 (414)
T KOG0787|consen 297 -------------------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARY 357 (414)
T ss_pred -------------------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHH
Confidence 11236788999999999999999998655433221 22335999999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEEe
Q 001674 688 MKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 688 mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
.||.+.+.|-.|-||-..+.+-.
T Consensus 358 f~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 358 FGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred hCCCeeEEeeeccccceEEEecc
Confidence 99999999999999999998743
No 144
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.35 E-value=0.00019 Score=78.40 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEe---ecHHHHHHHHHHHHH
Q 001674 448 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS---FNLRAILDDVLSLFS 524 (1033)
Q Consensus 448 LRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~---~dL~~ll~~v~~~~~ 524 (1033)
|..-|-+..-.+++....-.++.+ .-...+.+++.+|..-|+++--+|. .+.+.. .-|..-++-.++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~L~~~f~ 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEALLEDFK 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc------ccChhhhhhhhHHHHHHHHHHHhh
Confidence 445566666777776554322222 1225667777888888888876653 122221 224444555555555
Q ss_pred hhhhccCcEEEEEeCCCCCceEE-ecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCC
Q 001674 525 GKSQDKGVELAVYISDRVPETLI-GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 603 (1033)
Q Consensus 525 ~~a~~k~i~l~~~i~~~~p~~v~-gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~ 603 (1033)
...|+++.+..+. .|..+. --...|.+|...-++|-=+|+..-.|.|...
T Consensus 335 ---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~------------------------- 385 (459)
T COG4564 335 ---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQ------------------------- 385 (459)
T ss_pred ---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEec-------------------------
Confidence 5678888877653 343332 2346788899999999889885544444331
Q ss_pred CcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHH
Q 001674 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683 (1033)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~ 683 (1033)
.....+...|.|+|+|.+.+... ..-.||||--.++
T Consensus 386 ----------------------------~~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrE 421 (459)
T COG4564 386 ----------------------------QMGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRE 421 (459)
T ss_pred ----------------------------cCCcceEEEEecCCCCccchhhc----------------cCccccccccHHH
Confidence 11234789999999998865431 1126999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001674 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 684 Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
=+...||+..++|.|. ||..++.+|..
T Consensus 422 Rma~~GG~~~v~s~p~-GTel~v~Lp~~ 448 (459)
T COG4564 422 RMAHFGGELEVESSPQ-GTELTVLLPLD 448 (459)
T ss_pred HHHHhCceEEEEecCC-CcEEEEEecch
Confidence 9999999999999998 99999999874
No 145
>PF14501 HATPase_c_5: GHKL domain
Probab=98.27 E-value=1.4e-05 Score=75.00 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001674 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
|+.-|-.+|.||++||++++.. ..|.+.+...
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~-------------------------------------------- 37 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREE-------------------------------------------- 37 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--------------------------------------------
Confidence 4566889999999999998732 3444443211
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001674 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
...+.|.|+++-.+ + .++++ +++...++.|+||.+++++++.++|.+.++++.+ .|
T Consensus 38 ---------~~~~~i~i~N~~~~---~-~~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f 93 (100)
T PF14501_consen 38 ---------NGFLVIIIENSCEK---E-IEKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IF 93 (100)
T ss_pred ---------CCEEEEEEEECCCC---c-ccccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EE
Confidence 12567889988544 1 12222 1234557899999999999999999999887754 66
Q ss_pred EEEEEe
Q 001674 705 TFTAVF 710 (1033)
Q Consensus 705 ~~~lp~ 710 (1033)
++++-+
T Consensus 94 ~~~i~i 99 (100)
T PF14501_consen 94 TVKIVI 99 (100)
T ss_pred EEEEEE
Confidence 666543
No 146
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.24 E-value=8.4e-06 Score=105.76 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=98.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccc
Q 001674 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 962 (1033)
Q Consensus 883 ~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~ 962 (1033)
.+.+++|||+||++..+..+..+|...|+.+..+.++.+ + ....||++++|..||.+++.+..........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-~~~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-PEAHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-ccCCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 356789999999999999999999999999999999888 2 2467999999999999888776555443211
Q ss_pred cccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 963 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 963 ~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
....++|+++..........+.+.|+++|+.||++..+|...+....
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 12356888899999999999999999999999999999999987654
No 147
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.07 E-value=1.5e-05 Score=66.35 Aligned_cols=62 Identities=40% Similarity=0.723 Sum_probs=53.2
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001674 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~sk 497 (1033)
.+.++.+.++|||||||+++.++++.+.+... .+...++++.+..+++++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999999998876433 456678889999999999999999998874
No 148
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.00 E-value=4.9e-06 Score=96.44 Aligned_cols=92 Identities=26% Similarity=0.429 Sum_probs=81.3
Q ss_pred CEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccC
Q 001674 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 990 (1033)
Q Consensus 911 ~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~ 990 (1033)
++|.++..|.+|+..+. .+.+|+++.|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~-~~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILL-DHKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHh-cCCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 46777999999999884 68999999999999999999999999731 238999999
Q ss_pred CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 991 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 991 ~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+...+.+++|++++++||.+..++...+..+...
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccc
Confidence 9999999999999999999999999999888766543
No 149
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=6.3e-05 Score=85.39 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCC
Q 001674 551 GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 630 (1033)
Q Consensus 551 ~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1033)
..+.+++.|||.||+++.. ..|.|.+.. .
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~------------------------------------------------ 49 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--G------------------------------------------------ 49 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--C------------------------------------------------
Confidence 3578999999999999864 456555421 0
Q ss_pred CCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC------CCCCCcccchHHHHHHHHHHcCCEEEEEEeC--CCce
Q 001674 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIP--NIGS 702 (1033)
Q Consensus 631 ~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~------s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~--g~GS 702 (1033)
....|.|.|+|.||++++++++|++|++.+... ...+|--|.||+-...+ +.+.+.|.. +.+.
T Consensus 50 ----~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~ 120 (312)
T TIGR00585 50 ----GLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGL 120 (312)
T ss_pred ----CEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcc
Confidence 023589999999999999999999999765432 12345568888644433 368898875 4455
Q ss_pred EEEEE
Q 001674 703 TFTFT 707 (1033)
Q Consensus 703 tF~~~ 707 (1033)
.+.+.
T Consensus 121 ~~~~~ 125 (312)
T TIGR00585 121 AWQAL 125 (312)
T ss_pred eEEEE
Confidence 54443
No 150
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.61 E-value=0.00051 Score=66.76 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001674 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
+...+.-++.-++.||++|+.. +.|.|.+..
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~--------------------------------------------- 62 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEV--------------------------------------------- 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE---------------------------------------------
Confidence 4457889999999999999865 345444322
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001674 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
+...+.|+|.|+|.|+++.....--..= .......|+||.|++++++.+ .+ + .+.|++.
T Consensus 63 --------~~~~l~i~v~D~G~~~d~~~~~~~~~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v 121 (125)
T PF13581_consen 63 --------DPDRLRISVRDNGPGFDPEQLPQPDPWE-------PDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTV 121 (125)
T ss_pred --------cCCEEEEEEEECCCCCChhhccCccccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEE
Confidence 1124789999999999887554322110 023356799999999999875 55 4 7889998
Q ss_pred EEE
Q 001674 705 TFT 707 (1033)
Q Consensus 705 ~~~ 707 (1033)
+++
T Consensus 122 ~l~ 124 (125)
T PF13581_consen 122 TLR 124 (125)
T ss_pred EEE
Confidence 875
No 151
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.00024 Score=80.86 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCC
Q 001674 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1033)
-...|.|++.-|+.||+.+|+..+|.=.+++.-+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~---------------------------------------------- 66 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIE---------------------------------------------- 66 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE----------------------------------------------
Confidence 3456999999999999999977544433222111
Q ss_pred CCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCC-CC-CCCCcccchHHHHHHHHHHcCCE-EEEEEeCCC-ceEE
Q 001674 629 SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS-IS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPNI-GSTF 704 (1033)
Q Consensus 629 ~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s-~s-~~~~GtGLGLsI~k~Lv~~mgG~-I~v~S~~g~-GStF 704 (1033)
..+..++.+.|+|||+|||+++.+++|-.+.-.+.- .. ...|--|||.+-|=-..++.-|+ +.|.|..+. ++..
T Consensus 67 --~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~ 144 (538)
T COG1389 67 --RIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAY 144 (538)
T ss_pred --ecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceE
Confidence 011235789999999999999999999776432211 11 12345799999998888988876 777776654 7776
Q ss_pred EEEEEeC
Q 001674 705 TFTAVFG 711 (1033)
Q Consensus 705 ~~~lp~~ 711 (1033)
.+.+-..
T Consensus 145 ~~~l~id 151 (538)
T COG1389 145 EYELKID 151 (538)
T ss_pred EEEEEec
Confidence 6666543
No 152
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.73 E-value=0.0071 Score=46.26 Aligned_cols=54 Identities=37% Similarity=0.479 Sum_probs=48.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCC
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP 942 (1033)
+++++||++..+..+...+...|+.+....++.++...+. .+.+|++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6899999999999999999999999999999999988774 45799999998765
No 153
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.62 E-value=0.018 Score=57.85 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHHHHHhccCC-----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCC
Q 001674 549 DPGRFRQIITNLMGNSIKFTEK-----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~-----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (1033)
|-.+++-++.-++.||++|..+ |.|.|.+...+
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~------------------------------------------ 74 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD------------------------------------------ 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC------------------------------------------
Confidence 7788999999999999999865 77777765322
Q ss_pred CCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCc
Q 001674 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701 (1033)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~G 701 (1033)
..+.+.|.|.|+||.+ .++.+.|-+.. ...-..-|+||.+.+++++ ++.+++.++.+
T Consensus 75 -----------~~~~i~i~D~G~~~~~--~~~~~~~~~~~----~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 75 -----------GKLEIRIWDQGPGIED--LEESLGPGDTT----AEGLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred -----------CeEEEEEEeCCCCCCC--HHHhcCCCCCC----CcccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 2378999999988764 34455554221 1111233899999999875 57888665553
No 154
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.60 E-value=0.0095 Score=73.82 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCC
Q 001674 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (1033)
Q Consensus 552 rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1033)
++..|+..||.||+.+. ...|.|.+. +.
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~--~~------------------------------------------------- 49 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIE--EG------------------------------------------------- 49 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57789999999999975 455666552 10
Q ss_pred CCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC------CCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 001674 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698 (1033)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s------~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~ 698 (1033)
....|+|+|+|.||++++++.+|.+++..+-..- ...|=-|.||+-...+ +.+.+.|..
T Consensus 50 ---g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 50 ---GLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred ---CeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 1246999999999999999999999876443211 2234456777644443 367777765
No 155
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.36 E-value=0.024 Score=54.13 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=74.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEE-EEcCCCCCCCHHHHHHHHHhhcccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC-FMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlI-lmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
||||||||..-+.-+..+|.=.|+.+..+...+-..... ....+.+ ++...++ ...+.++.+-+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~--~~~~~~~~v~~g~~~--~~~~~l~~l~~----------- 65 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADW--SSPWEACAVILGSCS--KLAELLKELLK----------- 65 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhh--hcCCcEEEEEecCch--hHHHHHHHHHh-----------
Confidence 699999999999999999999999999888765422222 2345554 4444444 33444455443
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
..+++|++.+......... ..+-+-|..|++..+|.+.+++.
T Consensus 66 -----------~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 66 -----------WAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred -----------hCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 2458999999877665111 11567799999999999999875
No 156
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=95.96 E-value=0.05 Score=50.91 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=78.6
Q ss_pred EEEECCchhhHHHHHHHHHHcCc-EEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 741 ALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 741 vlvvd~~~~~~~v~~~~l~~~Gi-~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
++++|+++..+......++..|+ .+..+++..+++..+... .++++++|..... .....++..+++.. ....
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~d~iiid~~~~~---~~~~~~~~~i~~~~--~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--PPDLIIIDLELPD---GDGLELLEQIRQIN--PSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--TESEEEEESSSSS---SBHHHHHHHHHHHT--TTSE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--CceEEEEEeeecc---cccccccccccccc--cccc
Confidence 58999999999999999999999 999999999999988654 4888998866544 22334666676655 3455
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHH
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l 858 (1033)
++++............. ..+...++.||+..+.+...+
T Consensus 74 ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 74 IIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHhh
Confidence 55554433322222222 236778999999998887654
No 157
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.59 E-value=0.011 Score=58.80 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=42.1
Q ss_pred EEEEEEcCCCCChhhHhhccCcccccCCC--CCCCCCcccch--HHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEE
Q 001674 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIG--LSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 709 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~d~s--~s~~~~GtGLG--LsI~k~Lv~~mgG~I~v~S~~g-~GStF~~~lp 709 (1033)
.|.|.|+|.||+.+.+.++|......... .....|-.|+| +|+. .++..+.|.|... ...+++|...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 58999999999999999977655433221 12234567788 4433 4678899999864 3445555554
No 158
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=95.37 E-value=0.16 Score=55.17 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=85.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC-
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 817 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 817 (1033)
+++++||+++.........|+..|++|..+.+..+++..+... ++.+++|..+...+ ....+..++.. ....
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~d---G~~~~~~iR~~-~~~~~ 73 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLD---GLELCRRLRAK-KGSGP 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCC---HHHHHHHHHhh-cCCCC
Confidence 3789999999999999999999999999999999999887665 89999987655332 34466777755 3333
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
|.+++.+.+........ -..|...++.||+...++.+-+...+..
T Consensus 74 PIi~Lta~~~~~d~v~g--l~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 74 PIIVLTARDDEEDRVLG--LEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred cEEEEECCCcHHHHHHH--HhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 55555443222111111 1225678999999999999988888754
No 159
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.02 E-value=0.044 Score=67.99 Aligned_cols=90 Identities=29% Similarity=0.453 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHHHHHhccCCC---eEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCC
Q 001674 549 DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1033)
|...+.+++.-||+||+.....| .|.|.++ +
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~--~-------------------------------------------- 67 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH--A-------------------------------------------- 67 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe--C--------------------------------------------
Confidence 67789999999999999875444 4555442 0
Q ss_pred CCCCCCCCceeEEEEEEEcCCCCChhhHhh--------ccCcccccC---CCCCCCCCc-ccchHHHHHHHHHHcCCEEE
Q 001674 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRMKGEIG 693 (1033)
Q Consensus 626 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------IFepF~q~d---~s~s~~~~G-tGLGLsI~k~Lv~~mgG~I~ 693 (1033)
+ -.|+|.|+|.|||.+..+. +|....... .......+| .|.||+.+..+-+. +.
T Consensus 68 -------d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~ 133 (631)
T PRK05559 68 -------D---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LE 133 (631)
T ss_pred -------C---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee----EE
Confidence 0 0489999999999998888 887743221 111112334 79999998888654 45
Q ss_pred EEEeC
Q 001674 694 FVSIP 698 (1033)
Q Consensus 694 v~S~~ 698 (1033)
+++..
T Consensus 134 V~s~r 138 (631)
T PRK05559 134 VEVKR 138 (631)
T ss_pred EEEEe
Confidence 55543
No 160
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=94.27 E-value=0.2 Score=64.25 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=114.0
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+.+++++|+++..+......|+.+|+.+..+++..+++..+.. ..++++++|..+...+ .......++......
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~---G~e~~~~ir~~~~~~ 598 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMT---GLDIARELRERYPRE 598 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhccccC
Confidence 46789999999999999999999999999999999999988763 4578899887654332 233455555543212
Q ss_pred C-ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCC
Q 001674 817 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895 (1033)
Q Consensus 817 ~-~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn 895 (1033)
. +.++++...... ..... -..+...++.||+....+...+.+.+........... ... ... ..++
T Consensus 599 ~~~~ii~~ta~~~~-~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~~~~~~~--~~~-----~~~-----~~~~ 664 (779)
T PRK11091 599 DLPPLVALTANVLK-DKKEY-LDAGMDDVLSKPLSVPALTAMIKKFWDTQDDEESTVT--TEE-----SSK-----ANEA 664 (779)
T ss_pred CCCcEEEEECCchH-hHHHH-HHCCCCEEEECCCCHHHHHHHHHHHhccccccccccc--ccc-----ccc-----cccc
Confidence 2 233333322211 11111 1236678999999999999999888753221110000 000 000 0344
Q ss_pred HHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHh
Q 001674 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 955 (1033)
Q Consensus 896 ~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~ 955 (1033)
..+...+..++...|.. ...+++..+....+-++-.++..++..|.-++.+....
T Consensus 665 ~l~~~~l~~~~~~~g~~-----~~~~~l~~~~~~~~~~~~~l~~~l~~~d~~~~~~~ah~ 719 (779)
T PRK11091 665 LLDIPMLEQYVELVGPK-----LITDSLAVFEKMMPGYLSVLDSNLTARDQKGIVEEAHK 719 (779)
T ss_pred ccCHHHHHHHHHhcCHH-----HHHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666667776666542 13344444422111122233445677777666444433
No 161
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=94.16 E-value=0.29 Score=58.01 Aligned_cols=179 Identities=13% Similarity=0.163 Sum_probs=113.3
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.++++|||++..+.+....|+..|+.|..+.+..+++..+... .+++++.|..+. +.+. ..++..+++.. ..-|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp--~~~G-l~ll~~i~~~~-~~~p 78 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMP--GMDG-LELLKEIKSRD-PDLP 78 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCC--CCch-HHHHHHHHhhC-CCCC
Confidence 4699999999999999999999999999999999999998876 588888876554 3332 33555555544 2224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCC----------CC-CC-cchh------
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN----------WE-LP-SMSL------ 880 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~----------~~-~~-~~~~------ 880 (1033)
.+++.+.+.-..-.+..+. |...++.||+....+...+.+++.......... .. .. +...
T Consensus 79 VI~~Tg~g~i~~AV~A~k~--GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~ 156 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRL--GAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRL 156 (464)
T ss_pred EEEEeCCCCHHHHHHHHhc--CcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHH
Confidence 4444333222111111222 456789999999999999999886432211000 00 00 0000
Q ss_pred --hccCCCCeEEEEeCCHHHHHHHHHHHhhCCC-------EEEEEeChHHHHHH
Q 001674 881 --RHLLLGRKILIVDDNNVNLKVAAAGLKRYGA-------AVVCVERGKKATEL 925 (1033)
Q Consensus 881 --~~~~~~~~ILIVDDn~~n~~vl~~~L~~~g~-------~v~~a~~g~eAl~~ 925 (1033)
+-..+.-.|||.-..-.=.+++..++.+.+- .+-|+.=..+.++.
T Consensus 157 i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 157 IAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 0012334688888888888888888876532 34455555555553
No 162
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=93.80 E-value=1.2 Score=43.20 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=73.6
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcCCCCCCCH--HHHHHHHHhhccccccccccc
Q 001674 893 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~ea~~~IR~~e~~~~~~~~~g 967 (1033)
|.+..=...+..+|+..||+|.... ..++.++... ...+|+|.+-..|+..-. -++++++|+.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~----------- 77 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLREL----------- 77 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhc-----------
Confidence 6667777888899999999998654 3556666664 568999999887753322 2233444431
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 1022 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1022 (1033)
....++ +++-+....++.++..++|+|+|+..=-+.++...-++
T Consensus 78 ----------~~~~i~-i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 78 ----------GAGDIL-VVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ----------CCCCCE-EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 111344 44555566777888999999999999888888766553
No 163
>PRK14083 HSP90 family protein; Provisional
Probab=93.42 E-value=0.056 Score=66.39 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCChhhHhhccCcccccC-------CCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 001674 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG-------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~d-------~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~ 698 (1033)
.++|+|||+||+.++..+.|-..-... .......|.-|+|..=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 589999999999999888763222100 01112346678887644332 3345555544
No 164
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.36 E-value=2.1 Score=42.56 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=85.1
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcCCCCCCC--HHHHHHHHHhh
Q 001674 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREM 956 (1033)
Q Consensus 886 ~~~ILIV----DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~md--G~ea~~~IR~~ 956 (1033)
+++||+. |.+..-..++..+|+..||+|+... ..++.++... ++.+|+|.+-..|+... --++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4678888 9999999999999999999999753 3455566653 57899999998887432 22344455442
Q ss_pred cccccccccccccchhhhcccCCCCCcEEEEccC-----CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001674 957 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD-----VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 957 e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~-----~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
....++|++--+- ...++..++.+.|+|......-+.++...-++++..
T Consensus 82 ---------------------~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 ---------------------GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred ---------------------CCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1124444433221 135566789999999999999999999999888754
No 165
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=93.26 E-value=0.1 Score=64.58 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCChhh--------Hhhcc-Cccccc--CCCCCCCCCc-ccchHHHHHHHHHH
Q 001674 638 IVSVEDTGQGIPLEA--------QSRIF-TPFMQV--GPSISRTHGG-TGIGLSISKYLVGR 687 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~--------~~~IF-epF~q~--d~s~s~~~~G-tGLGLsI~k~Lv~~ 687 (1033)
.|+|.|+|.|||.+. .+-+| .+.... +....+..+| .|.||+.+..+-+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 489999999999988 77777 332211 1111122344 79999999988874
No 166
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=93.19 E-value=0.77 Score=59.93 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=81.9
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC-
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG- 815 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 815 (1033)
.+++++++|+++..+......|+.+|+++..+.+..+++..+.. ..++.+++|..+...+ .......++.....
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~---G~~~~~~ir~~~~~~ 763 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLD---GLETTQLWRDDPNNL 763 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhchhhc
Confidence 45789999999999999999999999999999999999988754 4578899987665433 23344555543211
Q ss_pred -CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 816 -FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 -~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
....++++............ ...+...++.||+....+...+...+.
T Consensus 764 ~~~~pii~lt~~~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 764 DPDCMIVALTANAAPEEIHRC-KKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCCcEEEEeCCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 12223333222211111111 123677899999999999988877654
No 167
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=93.01 E-value=0.19 Score=62.83 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHHHhccCC---CeEEEEE
Q 001674 549 DPGRFRQIITNLMGNSIKFTEK---GHIFVTV 577 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~---G~I~v~v 577 (1033)
|+.-|.+++.-||.||+.-... ..|.|.+
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 6677999999999999983323 3555544
No 168
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=92.27 E-value=0.76 Score=60.37 Aligned_cols=121 Identities=14% Similarity=0.237 Sum_probs=84.3
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+.++++||+++..+...+..|+.+|+.|..+.+..+++..+.. ..++++++|..++..+ .......++......
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~---g~~~~~~ir~~~~~~ 775 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGD---GVTLLQQLRAIYGAK 775 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCC---HHHHHHHHHhCcccc
Confidence 34589999999999999999999999999999999999998865 5689999987664432 334555565543322
Q ss_pred C-ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 817 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~-~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
. ..++++............ -..+...++.||+....+...+...+.
T Consensus 776 ~~~pii~lta~~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 776 NEVKFIAFSAHVFNEDVAQY-LAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCCeEEEEECCCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 2 233333222221111111 123677899999999999999988774
No 169
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=92.26 E-value=0.25 Score=61.43 Aligned_cols=88 Identities=30% Similarity=0.513 Sum_probs=54.7
Q ss_pred CceEEe--cHHHHHHHHHHHHHHHHhccCCC---eEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCcccc
Q 001674 543 PETLIG--DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617 (1033)
Q Consensus 543 p~~v~g--D~~rL~QIL~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 617 (1033)
|...+| |+.-|.+++.-||.||+.-...| .|.|.++-
T Consensus 26 PgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~-------------------------------------- 67 (638)
T PRK05644 26 PGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE-------------------------------------- 67 (638)
T ss_pred CCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC--------------------------------------
Confidence 334444 67789999999999999843344 55555420
Q ss_pred ccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhh--------ccCccccc---CCCCCCCCCc-ccchHHHHHHHH
Q 001674 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLV 685 (1033)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------IFepF~q~---d~s~s~~~~G-tGLGLsI~k~Lv 685 (1033)
+. .|+|.|+|.|||.+..+. ||.-.... +....+..+| -|.||+.+..+-
T Consensus 68 ---------------~g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS 129 (638)
T PRK05644 68 ---------------DG---SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALS 129 (638)
T ss_pred ---------------CC---cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhhee
Confidence 00 489999999999974332 44332111 1111222233 699999888877
Q ss_pred H
Q 001674 686 G 686 (1033)
Q Consensus 686 ~ 686 (1033)
+
T Consensus 130 ~ 130 (638)
T PRK05644 130 T 130 (638)
T ss_pred c
Confidence 6
No 170
>PLN03029 type-a response regulator protein; Provisional
Probab=92.26 E-value=0.99 Score=48.65 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCC------------------ccceEEEeeccccccC
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS------------------KIINMILVEQEVWEKD 798 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~------------------~~~~~~~~d~~~~~~~ 798 (1033)
...++++||+++..+......|+.+|+++..+.+..+++..+.... ..++++++|..+...+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3578999999999999999999999999999999999988764321 2467888887654432
Q ss_pred ccchHHHHHHHhhcCCCCCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHH
Q 001674 799 TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (1033)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~ 860 (1033)
....+..++.........++++............. ..+...++.||+....+......
T Consensus 87 ---G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al-~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 87 ---GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCL-EEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred ---HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHH-HhCchheEECCCCHHHHHHHHHH
Confidence 23455555554322222233333222111111111 12566899999998877655443
No 171
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=91.21 E-value=2.6 Score=40.26 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=76.0
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHH-HHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL-QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~-~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
.+.+++++|+++..+......++.+|..+..+.+.. +++..+.... .++.+++|..+...+ ...+...+++. ..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~---G~~~~~~l~~~-~~ 78 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMD---GIELLRRLRAR-GP 78 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCC---HHHHHHHHHhC-CC
Confidence 467899999999999999999999999999999995 9988876542 467788887766333 34455566654 12
Q ss_pred CCceEEEEeccCCccc-cCcCCCCCCCCceeccCCchHH-HHHHHHHH
Q 001674 816 FQSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLRSSM-LAASLQRA 861 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~-~~~~~~~~~~~~~i~kPl~~s~-l~~~l~~~ 861 (1033)
..| ++++ ++..... ..... ..+...++.||+.... +...+.+.
T Consensus 79 ~~p-vv~~-t~~~~~~~~~~~~-~~g~~~~l~kP~~~~~~l~~~i~~~ 123 (130)
T COG0784 79 NIP-VILL-TAYADEADRERAL-AAGADDYLTKPIFLEEELLAALRRL 123 (130)
T ss_pred CCC-EEEE-EcCcCHHHHHHHH-HcCCCeEEcCCCCcHHHHHHHHHHH
Confidence 224 3333 3322221 11111 1245568999976655 55555543
No 172
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=91.10 E-value=0.91 Score=43.74 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=71.3
Q ss_pred HHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCC--CCHHHHHHHHHhhcccccccccccccchhhhccc
Q 001674 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 977 (1033)
Q Consensus 900 ~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~--mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~ 977 (1033)
..+...|++.|++|+.+.+..+|+..+.....+++|++|.. ++ ....+++++||+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--------------------- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER--------------------- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh---------------------
Confidence 45677888899999999999999999976677899999986 21 1234677788763
Q ss_pred CCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHH
Q 001674 978 SNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 1017 (1033)
Q Consensus 978 ~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L 1017 (1033)
+..+||.+++.....+..-...-.-.++|+-..-+-.++
T Consensus 65 -~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 65 -NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp -STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred -CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 347999999987766666556666788999887665544
No 173
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=91.05 E-value=1.5 Score=57.53 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=83.2
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 736 ~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+.++++||+++..+......|+.+|+.|..+.+..+++..+.. ..++.+++|..+...+ .......+++...
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~md---G~el~~~ir~~~~- 872 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMD---GYRLTQRLRQLGL- 872 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCC---HHHHHHHHHhcCC-
Confidence 357899999999999999999999999999999999999988754 4588899988765433 3344555554322
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001674 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l 862 (1033)
..|.+.+.+.... ...... ...|...++.||+....+...+....
T Consensus 873 ~~pII~lTa~~~~-~~~~~~-~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 873 TLPVIGVTANALA-EEKQRC-LEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred CCCEEEEECCCCH-HHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 1243333332221 111111 12367789999999999988887654
No 174
>PRK05218 heat shock protein 90; Provisional
Probab=90.77 E-value=0.77 Score=57.01 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCChhhHhhccCcccccC------------CCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC
Q 001674 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG------------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~d------------~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g 699 (1033)
.|+|+|||+||+.+++..-|...-+.+ .+.....|-.|+|+.= +=+.+-++.|.|...
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S----~f~va~~v~V~Sr~~ 143 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS----AFMVADKVTVITRSA 143 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh----hhhccCEEEEEEcCC
Confidence 489999999999999888764433211 0112234567888852 223356789988763
No 175
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=90.39 E-value=0.22 Score=62.18 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCChhhHhhcc
Q 001674 638 IVSVEDTGQGIPLEAQSRIF 657 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IF 657 (1033)
.+.|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 58999999999998866544
No 176
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=89.90 E-value=23 Score=40.87 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=63.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHc-CcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~-Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+++++|+++..+......|... |+.+. .+.+..+++..+.. ..++.+++|..+...+ ...++..++....
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~d---gle~l~~i~~~~~- 76 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMD---GLDALEKIMRLRP- 76 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCC---hHHHHHHHHHhCC-
Confidence 358999999999998888888876 88876 78899999887643 3467888876654332 2234455544332
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCc
Q 001674 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 850 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~ 850 (1033)
.+.+++..............-..+...++.||+.
T Consensus 77 -~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 -TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred -CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 3333332211111010000011245678999984
No 177
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.61 E-value=0.74 Score=45.26 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEEEEee
Q 001674 554 RQIITNLMGNSIKFTEKGHIFVTVYLVE 581 (1033)
Q Consensus 554 ~QIL~NLl~NAiKfT~~G~I~v~v~~~~ 581 (1033)
--+...|+.||+||...|.|.|..++..
T Consensus 65 gYl~NELiENAVKfra~geIvieasl~s 92 (184)
T COG5381 65 GYLANELIENAVKFRATGEIVIEASLYS 92 (184)
T ss_pred HHHHHHHHHhhhcccCCCcEEEEEEecc
Confidence 3466789999999999999999887643
No 178
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=89.33 E-value=5.2 Score=51.87 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=79.4
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
++.+++++|+++.........|..+|+.+..+.+..+++..+......+++++++ .. . .........++... .
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll~--~~--~-~~g~~l~~~l~~~~--~ 768 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLVD--DR--L-LDEEQAAAALHAAA--P 768 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEEC--CC--C-CCHHHHHHHHHhhC--C
Confidence 5678999999999999999999999999999999999999887655567888772 11 1 11223344444322 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
...++++............. ..+ ..++.||+....+...+...+..
T Consensus 769 ~ipIIvls~~~~~~~~~~~~-~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 769 TLPIILGGNSKTMALSPDLL-ASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred CCCEEEEeCCCchhhhhhHh-hcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 22233333322222221111 224 77899999999999999888753
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.19 E-value=2.9 Score=40.20 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=63.0
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcCCCCCC--CHHHHHHHHHhhccccccccccc
Q 001674 893 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
|.+..-..++..+|+..||+|.... ..++.++.+. ..+||+|.+-..+... +..++++.+|+.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~----------- 77 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEA----------- 77 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHc-----------
Confidence 6667777899999999999997643 3445556553 5689999998875543 334555566542
Q ss_pred ccchhhhcccCCC-CCcEEEEccCCcHHHHHHHHHcCCCEEEeCC
Q 001674 968 EVSIEAYENVSNF-HVPILAMTADVIQATYEECLRSGMDGYVSKP 1011 (1033)
Q Consensus 968 ~~~~~~~~~~~~~-~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP 1011 (1033)
.+ .++ |++-+.......+.+.+.|+|.|+...
T Consensus 78 -----------~~~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 78 -----------GLDDIP-VLVGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred -----------CCCCCe-EEEECCCCChhHHHHHHcCCeEEECCH
Confidence 12 344 445555555555678899998887643
No 180
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=89.04 E-value=1.9 Score=56.32 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=81.7
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+.+++++|+++..+......|+.+|+.|..+.+..+++..+.. ...++++++|..+...+ ....+..++... ..
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~---G~~~~~~lr~~~-~~ 754 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYD---GITLARQLAQQY-PS 754 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCC---HHHHHHHHHhhC-CC
Confidence 46789999999999999999999999999999999999987643 24579999988765433 223444555422 11
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.|.+++.+.. ......... ..+...++.||+....+...+...+.
T Consensus 755 ~~ii~~t~~~-~~~~~~~~~-~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 755 LVLIGFSAHV-IDETLRQRT-SSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCEEEEeCCC-chhhHHHHH-hcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 2333333222 111111111 12455789999999999999988774
No 181
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=88.98 E-value=2.7 Score=40.15 Aligned_cols=116 Identities=17% Similarity=0.303 Sum_probs=82.4
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHH--HHHHhhcccc
Q 001674 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT--KIIREMEHNF 960 (1033)
Q Consensus 883 ~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~--~~IR~~e~~~ 960 (1033)
.+.||+++.||.|.........+|..-|.+|+.-..-. .+ .++.||++++.+-.+--.-...- +-.|..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al---- 78 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----AL-PPAHYDMMLLGVAVTFRENLTMQHERLAKAL---- 78 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----cc-ChhhhceeeecccccccCCchHHHHHHHHHH----
Confidence 46789999999999999999999999999998754433 33 45679999999877654443322 111211
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHhhC
Q 001674 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR-EVSRFF 1025 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~-~v~r~~ 1025 (1033)
+..+--|+++-.. .....++..+-|+-+.+.||++...|.. .+..+-
T Consensus 79 -----------------~mtd~vilalPs~-~qv~AeqLkQ~g~~~CllKPls~~rLlptllae~~ 126 (140)
T COG4999 79 -----------------SMTDFVILALPSH-AQVNAEQLKQDGAGACLLKPLSSTRLLPTLLAEFC 126 (140)
T ss_pred -----------------hhhcceEEecCcH-HHHhHHHHhhcchHhHhhCcchhhhhHHHHHHHhh
Confidence 1113346666544 3456678889999999999999999987 555553
No 182
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=87.98 E-value=5.5 Score=41.67 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=76.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|......+ .......++........
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~---g~~~~~~l~~~~~~~~~ 77 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTS---GIELCRRLRRRPETRAI 77 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCc---HHHHHHHHHccccCCCC
Confidence 578999999999988888999999999989999888877654 3468888886654322 22344555443222222
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++............ -..+...++.||.....+...+...+.
T Consensus 78 ~ii~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 78 PIIMLTARGEEEDRVRG-LETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred CEEEEecCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 33333322111111111 112566789999999999888887764
No 183
>PTZ00130 heat shock protein 90; Provisional
Probab=87.72 E-value=0.71 Score=58.08 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCChhhHhhccCc--------ccc---cCCCCCCCCCcccchHHHHHHH
Q 001674 638 IVSVEDTGQGIPLEAQSRIFTP--------FMQ---VGPSISRTHGGTGIGLSISKYL 684 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFep--------F~q---~d~s~s~~~~GtGLGLsI~k~L 684 (1033)
.++|+|||+||+.+++..-+-. |.+ .......-.|-.|+|++=|--+
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmV 193 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 193 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeee
Confidence 5789999999999986543311 211 0011122456689998766443
No 184
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=87.39 E-value=2.3 Score=50.94 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=92.8
Q ss_pred EEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceE
Q 001674 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820 (1033)
Q Consensus 741 vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1033)
++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|..+...+ ....+..++.... ...+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~---g~~ll~~l~~~~~--~~~v 73 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGED---GLDLLPQIKKRHP--QLPV 73 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHHhCC--CCeE
Confidence 4789999998888889999999999999999999887754 3578888887654332 2234444544221 2333
Q ss_pred EEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHH
Q 001674 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900 (1033)
Q Consensus 821 ~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~ 900 (1033)
+++............. ..+...++.||+..+.+...+...+......... . ......+....++.+++.+++
T Consensus 74 Ivlt~~~~~~~~~~a~-~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~--~-----~~~~~~~~~~~lig~s~~~~~ 145 (463)
T TIGR01818 74 IVMTAHSDLDTAVAAY-QRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL--P-----ADAGEAEDSAELIGEAPAMQE 145 (463)
T ss_pred EEEeCCCCHHHHHHHH-HcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh--h-----hhhhccccccceeecCHHHHH
Confidence 3333222111111111 1256678999999998888887765422110000 0 000001122457888898888
Q ss_pred HHHHHHhhCC
Q 001674 901 VAAAGLKRYG 910 (1033)
Q Consensus 901 vl~~~L~~~g 910 (1033)
++..+.+..+
T Consensus 146 v~~~i~~~a~ 155 (463)
T TIGR01818 146 VFRAIGRLSR 155 (463)
T ss_pred HHHHHHHHhC
Confidence 8877765443
No 185
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=87.37 E-value=5.6 Score=42.09 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=76.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++++++|......+ ....+..++........
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGS---GIQFIKHLKRESMTRDI 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhccccCCC
Confidence 478999999999988889999999999999999998887653 4568888876554322 23344555543221222
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.+++++............ ..+...++.||+....+...+...+.
T Consensus 78 pvi~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 78 PVVMLTARGEEEDRVRGL-ETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CEEEEECCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 333333222111111111 12566889999999999888877664
No 186
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=87.08 E-value=18 Score=41.42 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=68.4
Q ss_pred cEEEEECCchhhHHHHHHHH-HHcCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHI-QRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l-~~~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
++++++|+++..+......+ +..|+.+. .+++..+++..+.. ..++.+++|..+...+ ....+..++....
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~---G~e~l~~l~~~~~-- 73 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMD---GVEATRRIMAERP-- 73 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCC---HHHHHHHHHHHCC--
Confidence 37899999999888888888 57788875 68899999888754 4578888886654332 2234444444211
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCC---------chHHHHHHHHHHh
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPL---------RSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl---------~~s~l~~~l~~~l 862 (1033)
.+.+++..............-..+...++.||. ....+...+....
T Consensus 74 ~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 74 CPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred CcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 233333322111110000011125567899998 3445555555444
No 187
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=87.08 E-value=8.5 Score=38.07 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=72.9
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---eChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccccc
Q 001674 893 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
|-+..-..++..+|+..||+|+-. .+.++.++... ++.+|+|.+-..|... .+.++.+.+.-++
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~-e~~adii~iSsl~~~~--~~~~~~~~~~L~~---------- 79 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV-EADVHVVGVSSLAGGH--LTLVPALRKELDK---------- 79 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCchhhh--HHHHHHHHHHHHh----------
Confidence 455556678899999999999864 35677777774 5689999886655221 2333333321100
Q ss_pred chhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001674 970 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.....++|+ +-+....++.++..++|+|+|+..=-+..+..+.+.+-
T Consensus 80 -------~g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 80 -------LGRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKK 126 (132)
T ss_pred -------cCCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 011134444 45445567788899999999999888888888777653
No 188
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=86.69 E-value=2.9 Score=47.52 Aligned_cols=115 Identities=18% Similarity=0.281 Sum_probs=78.6
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.-.++++|||.+......+..|+..|+.+..+.++..++....+. +++.++.|..+..++ ...++..++......
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~md---g~ev~~~lk~~~p~t 87 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMD---GAEVLNKLKAMSPST 87 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCcc---HHHHHHHHHhcCCcc
Confidence 346899999999999999999999999999999999888776443 388888887654433 445777777743333
Q ss_pred C--ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHH
Q 001674 817 Q--SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (1033)
Q Consensus 817 ~--~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l 858 (1033)
. |.+++.+-+-++.... ... .++..++.||++...+....
T Consensus 88 ~~ip~i~lT~~~d~~~~~~-~~~-~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 88 RRIPVILLTAYADSEDRQR-ALE-AGADDYLSKPISPKELVARV 129 (360)
T ss_pred cccceEEEeecCChHHHHH-HHH-hhHHHHhcCCCCHHHHHHHH
Confidence 3 4444433332222221 112 46778999999977665443
No 189
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=86.48 E-value=6.3 Score=41.63 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=75.6
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++.........+...|+.+..+.+..+++..+.. .++.+++|......+ ....+..++.... .+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~---g~~~~~~l~~~~~--~~- 73 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKN---GIDTLKELRQTHQ--TP- 73 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCc---HHHHHHHHHhcCC--Cc-
Confidence 68999999999998999999999999999999998887642 478888886654322 2334555554332 23
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
++++............ -..+...++.||+....+...+...+.
T Consensus 74 ii~lt~~~~~~~~~~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 74 VIMLTARGSELDRVLG-LELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred EEEEECCCCHHHHHHH-HHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 3333322111111111 122566899999999999888887764
No 190
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=86.16 E-value=2.5 Score=52.98 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=66.4
Q ss_pred eEEEEeCCH-HH-----HHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccc
Q 001674 888 KILIVDDNN-VN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 888 ~ILIVDDn~-~n-----~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~ 961 (1033)
+|+|||++- .+ .+.+...|++.|++|..+.+..+++.........++|++|.+-. ..++++.||+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 73 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQL----- 73 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHh-----
Confidence 467776662 22 45677788889999999999999999887666788999995432 24577888863
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001674 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
+..+||+++.............-.-.++|+-.
T Consensus 74 -----------------~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (713)
T PRK15399 74 -----------------NEYLPLYAFINTHSTMDVSVQDMRMALWFFEY 105 (713)
T ss_pred -----------------CCCCCEEEEcCccccccCChhHhhhcceeeee
Confidence 34699999887543332222222334555553
No 191
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=85.98 E-value=3.8 Score=46.74 Aligned_cols=85 Identities=9% Similarity=0.016 Sum_probs=58.8
Q ss_pred CCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEE-c
Q 001674 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM-T 988 (1033)
Q Consensus 910 g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIal-T 988 (1033)
|.+++.+.+..++-..+. .-.+|++|..| . ..-++..- ..+..++++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~-----~--~~~~~~~~---------------------p~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA---RAPLVLVDADM-----A--EACAAAGL---------------------PRRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhccc---cCCeEEECchh-----h--hHHHhccC---------------------CCCCCEEEEeC
Confidence 556777777776655542 36889999754 1 12222211 112335544 4
Q ss_pred cCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 989 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 989 a~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
...+.+....++++|+.||+.+|++.++|.+.+.+..
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 4557889999999999999999999999999999874
No 192
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=85.29 E-value=0.98 Score=55.94 Aligned_cols=48 Identities=38% Similarity=0.616 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCChhhHh--------hccCccccc---CCCCCCCCCc-ccchHHHHHHHH
Q 001674 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLV 685 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---d~s~s~~~~G-tGLGLsI~k~Lv 685 (1033)
.|+|.|+|.|||.+..+ -+|...... +....+..+| -|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976533 233333211 1111122233 699999888774
No 193
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=85.11 E-value=9.3 Score=40.75 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=77.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
..+++++|+++..+......+...|..+..+.+..+++..+.. ..++++++|...... .....+..++... ...
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~---~g~~~~~~lr~~~-~~~ 78 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGE---DGLSICRRLRSQN-NPT 78 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCC---CHHHHHHHHHhcC-CCC
Confidence 4579999999999999999999999999999999888877644 456788887655332 2233444554422 112
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
|.++ +............ -..+...++.||+....+.+.+...+..
T Consensus 79 pii~-ls~~~~~~~~~~~-l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 79 PIIM-LTAKGEEVDRIVG-LEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred CEEE-EECCCcHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 3333 3322111111111 1225668999999999999888877753
No 194
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=85.09 E-value=6.6 Score=40.94 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=76.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.-|.+|||+..-+......|...|+++....+..+.+.... ......++.|-.++.. ....+...+...+.. -|
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--~~~pGclllDvrMPg~---sGlelq~~L~~~~~~-~P 78 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--LDRPGCLLLDVRMPGM---SGLELQDRLAERGIR-LP 78 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--CCCCCeEEEecCCCCC---chHHHHHHHHhcCCC-CC
Confidence 45889999999999999999999999999999999887621 1223344555443322 223344455443321 25
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
.+++...+.-+..-...+. |...++.||++.+.+.+++++++..
T Consensus 79 VIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 5555433222222222222 4557899999999999999998865
No 195
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=84.27 E-value=1.2 Score=55.35 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCChhhHhhccCcccccC
Q 001674 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG 664 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~d 664 (1033)
.|.|.|||+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 489999999999999999999997643
No 196
>PRK11173 two-component response regulator; Provisional
Probab=84.18 E-value=9.2 Score=40.85 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=76.4
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++..+......|+..|..+..+.+..+++..+.. ..++++++|...... .....+..++.. ...|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~---~g~~~~~~lr~~--~~~p 76 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPGK---NGLLLARELREQ--ANVA 76 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCC---CHHHHHHHHhcC--CCCC
Confidence 479999999999998999999999999999999999887654 357888887665332 223344455542 1224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.++ +............ -..+...++.||+....+...+...+.
T Consensus 77 ii~-lt~~~~~~~~~~~-~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 77 LMF-LTGRDNEVDKILG-LEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred EEE-EECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 333 3322211111111 122566899999999988877776664
No 197
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=84.18 E-value=22 Score=37.28 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=75.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++.........++..|..+..+.+..+++..+.. ..++.+++|......+ ....+..++.... ..|
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~l~~~lr~~~~-~~p 74 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDED---GLSLIRRWRSNDV-SLP 74 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCC
Confidence 368999999998888889999999999999999999877643 3467888876543321 2234444544221 224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
.+++. ........... -..+...++.||+....+...+...+..
T Consensus 75 ii~ls-~~~~~~~~~~~-l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 75 ILVLT-ARESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEEEE-cCCCHHHHHHH-HHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 44332 22111111111 1125667899999999998888877653
No 198
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=83.89 E-value=11 Score=39.91 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=75.3
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++..+......+...|..+..+.+..+++..+.. ..++.+++|......+ ....+..++.... ..|
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~---g~~~~~~lr~~~~-~~p 74 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVN---GWDIVRMLRSANK-GMP 74 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCC
Confidence 368999999999888888999999999999999888876543 3467888876554322 2234445544321 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.+ ++............. ..+...++.||+....+...+...+.
T Consensus 75 ii-~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 75 IL-LLTALGTIEHRVKGL-ELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred EE-EEEcCCCHHHHHHHH-hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33 332221111111111 12566799999999999888887764
No 199
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=82.69 E-value=14 Score=38.35 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=75.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|......+ ...++..++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~i~~~~--~~~ 73 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD---GRDILREWREKG--QRE 73 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999998889999999999999998888876643 3468888886654321 223445554422 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++............ -..+...++.||.....+...+...+.
T Consensus 74 ~ii~lt~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 74 PVLILTARDALAERVEG-LRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred cEEEEECCCCHHHHHHH-HhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 33333322211111111 112556789999999988888877664
No 200
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=82.17 E-value=4.3 Score=51.02 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=57.7
Q ss_pred eEEEEeCC-HHH-----HHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccc
Q 001674 888 KILIVDDN-NVN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 888 ~ILIVDDn-~~n-----~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~ 961 (1033)
+||||+++ ..+ .+.+...|++.|++|..+.+..+++.........++|+.|.+- -..++++.||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----- 73 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKM----- 73 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHh-----
Confidence 35666555 222 4567778899999999999999999988666678899999532 124477777763
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCc
Q 001674 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVI 992 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~ 992 (1033)
+..+||+++.....
T Consensus 74 -----------------~~~~Pv~~~~~~~~ 87 (714)
T PRK15400 74 -----------------NENLPLYAFANTYS 87 (714)
T ss_pred -----------------CCCCCEEEEccccc
Confidence 34699999877543
No 201
>CHL00148 orf27 Ycf27; Reviewed
Probab=81.15 E-value=16 Score=38.63 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=75.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
.++++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|....... ....+..++.. ...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~--~~~ 78 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLD---GYGVCQEIRKE--SDV 78 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCC
Confidence 4689999999999998889999999999988898888876643 3467888876554322 23344445442 122
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
+.++ +............. ..+...++.||+....+...+...+.
T Consensus 79 ~ii~-ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 79 PIIM-LTALGDVSDRITGL-ELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred cEEE-EECCCCHHhHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 4333 32221111111111 12456789999999999888877664
No 202
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=81.13 E-value=16 Score=38.25 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=74.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........++..|..+..+.+..+++..+.. ..++.+++|......+ ...++..++... ..|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~~ 75 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGED---GLMLTRELRSRS--TVG 75 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhCC--CCC
Confidence 478999999998888888999999999999999998877654 3478888876543321 233445555421 223
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.+ ++............ -..+...++.||+....+...+...+.
T Consensus 76 ii-~l~~~~~~~~~~~~-l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 76 II-LVTGRTDSIDRIVG-LEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred EE-EEECCCcHHHHHHH-HHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 33 33322211111111 122566789999999988887776653
No 203
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=81.07 E-value=36 Score=35.71 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=74.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++..+......++..|..+..+.+..+++..+.. ..++.+++|......+ ....+..++.. ...|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~--~~~p 74 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQW--SAIP 74 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHcC--CCCC
Confidence 368999999999998899999999999999998888876543 3468888876554322 23344455432 1224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.+++... ........ .-..+...++.||+....+...+...+.
T Consensus 75 vi~lt~~-~~~~~~~~-~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 75 VIVLSAR-SEESDKIA-ALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred EEEEECC-CCHHHHHH-HHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3333221 11111111 1122556799999999999888877664
No 204
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=80.63 E-value=15 Score=38.44 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=75.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++..+......++..|..+..+.+..+++..+.. ..++.+++|......+ ....+..++... ..|
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~--~~~ 73 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD---GWQILQTLRTAK--QTP 73 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCC---HHHHHHHHHcCC--CCC
Confidence 368999999999988888999999999999999998877643 4578888876554322 223444454421 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.+ ++............ -..+...++.||.....+...+...+.
T Consensus 74 ii-~ls~~~~~~~~~~a-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 74 VI-CLTARDSVDDRVRG-LDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred EE-EEECCCCHHHHHHH-HhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 33 33322111111111 122566789999999999888887764
No 205
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=80.48 E-value=20 Score=37.44 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=75.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|....... ....+..++... ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~ 76 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDIS---GFELCRQLLAFH--PAL 76 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 479999999998888888899999999888898888876643 3467888876553322 233445555432 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
.++++............ -..+...++.||.....+...+...+..
T Consensus 77 ~ii~ls~~~~~~~~~~a-~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 77 PVIFLTARSDEVDRLVG-LEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred CEEEEEcCCcHHHHHHH-hhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 33333322111111111 1225667999999999998888776643
No 206
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=80.44 E-value=13 Score=38.85 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=74.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|......+ ....+..++.... ..|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~~~-~~p 74 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDED---GLHLLRRWRQKKY-TLP 74 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCc
Confidence 368999999999988899999999999999999888877654 3467888876553322 2234444444321 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.++ +............ -..+...++.||+....+...+...+.
T Consensus 75 ii~-ls~~~~~~~~~~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 75 VLI-LTARDTLEDRVAG-LDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred EEE-EECCCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 333 3222111111111 122556789999999999888877664
No 207
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=80.28 E-value=16 Score=39.02 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=75.5
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++..+......++..|+.+..+.+..+++..+.. ..++.+++|......+ .......++... ..|.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~~~~~ir~~~--~~pi 75 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKD---GMTICRDLRPKW--QGPI 75 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCCE
Confidence 68999999999999999999999999999999998887654 3467888876554322 233444554421 1243
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
++ +............ -..+...++.||+....+...+...+..
T Consensus 76 i~-l~~~~~~~~~~~~-~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 76 VL-LTSLDSDMNHILA-LEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EE-EECCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 33 3222111111111 1225668999999999988888776643
No 208
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=79.97 E-value=17 Score=39.31 Aligned_cols=117 Identities=19% Similarity=0.342 Sum_probs=72.4
Q ss_pred cEEEEECCchhhHHHHHHHHHHc-CcEE-EEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~-Gi~v-~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++..+......+.+. |+.+ ..+++..+++..+......++.+++|..+...+ ....+..+++...
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~---G~eli~~l~~~~~-- 76 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQEN---GLDLLPVLHEAGC-- 76 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCC---cHHHHHHHHhhCC--
Confidence 36899999999888888888764 6654 467888888877654445578888887654432 2234455544322
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHH
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~ 861 (1033)
...++++............. ..+...++.||.....+..++...
T Consensus 77 ~~~vI~ls~~~~~~~~~~al-~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 77 KSDVIVISSAADAATIKDSL-HYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCEEEEECCCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHH
Confidence 22344443322211111111 125667899999998888887653
No 209
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=79.80 E-value=17 Score=39.72 Aligned_cols=120 Identities=11% Similarity=0.177 Sum_probs=76.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHc-CcEE-EEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~-Gi~v-~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++.........+... ++.+ ..+.+..+++..+.. ..++.+++|..+...+ .......++......
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~d---G~~~l~~i~~~~~~~ 77 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLD---GIGVLEKLNEIELSA 77 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhhcccc
Confidence 57999999999888888888754 4554 468899999987754 4578888887654332 223444555433222
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
.+.++++............ -..+...++.||+....+...+.+.+..
T Consensus 78 ~~~iI~lt~~~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 78 RPRVIMLSAFGQEKITQRA-VALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCeEEEEeCCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 2444444322111111111 1225668999999999999999887653
No 210
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=79.02 E-value=17 Score=39.53 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=60.3
Q ss_pred HHHhhCCCEEE--EEeChHHHHHHhCCCCCccEEEEcCCCC---------C-CCHHHHHHHHHhhcccccccccccccch
Q 001674 904 AGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFNNRIRRGEVSI 971 (1033)
Q Consensus 904 ~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlIlmDi~MP---------~-mdG~ea~~~IR~~e~~~~~~~~~g~~~~ 971 (1033)
+.|-+.|+.|. |++|...|-.+. .-.+|+| || + .+ .+.++.|++.
T Consensus 117 ~~L~~~Gf~vlpyc~dd~~~ar~l~--~~G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~--------------- 173 (248)
T cd04728 117 EILVKEGFTVLPYCTDDPVLAKRLE--DAGCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER--------------- 173 (248)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHH--HcCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---------------
Confidence 34445699877 667777776654 2457777 77 1 23 6777888762
Q ss_pred hhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHH
Q 001674 972 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 1021 (1033)
Q Consensus 972 ~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~v 1021 (1033)
..+|||+=-+-...++..+|++.|+|+++ .|.-++..+.++.
T Consensus 174 --------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 174 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred --------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHH
Confidence 25899998888999999999999999996 4544444444333
No 211
>PRK00208 thiG thiazole synthase; Reviewed
Probab=78.43 E-value=18 Score=39.41 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=60.1
Q ss_pred HHHhhCCCEEE--EEeChHHHHHHhCCCCCccEEEEcCCCC---------C-CCHHHHHHHHHhhcccccccccccccch
Q 001674 904 AGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFNNRIRRGEVSI 971 (1033)
Q Consensus 904 ~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlIlmDi~MP---------~-mdG~ea~~~IR~~e~~~~~~~~~g~~~~ 971 (1033)
+.|-+.|+.|. |++|...|-.+.. -.+|+| || + .+ .+.++.|++.
T Consensus 117 ~~L~~~Gf~vlpyc~~d~~~ak~l~~--~G~~~v-----mPlg~pIGsg~gi~~-~~~i~~i~e~--------------- 173 (250)
T PRK00208 117 EILVKEGFVVLPYCTDDPVLAKRLEE--AGCAAV-----MPLGAPIGSGLGLLN-PYNLRIIIEQ--------------- 173 (250)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---------------
Confidence 34445699877 6677777766542 357877 77 1 13 6777777762
Q ss_pred hhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHH
Q 001674 972 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYRE 1020 (1033)
Q Consensus 972 ~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~ 1020 (1033)
..+|||+=-+-...++..+|++.|+|+++ .|.-++..+.++
T Consensus 174 --------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~a 219 (250)
T PRK00208 174 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARA 219 (250)
T ss_pred --------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHH
Confidence 25899998888999999999999999996 464444444433
No 212
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=78.42 E-value=33 Score=34.04 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHhhCCCEEEEE---eChHHHHHHhCCCCCccEEEEcCCCCCCC-H-HHHHHHHHhhccccccccccccc
Q 001674 895 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMD-G-FEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 895 n~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~md-G-~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
+..-..++..+|+..||+|+.. ...++-++... ++.+|+|-+-.-|-..- . -++.+++|+. |
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~~~adiVglS~l~~~~~~~~~~~~~~l~~~----------g-- 80 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-ETKADAILVSSLYGHGEIDCKGLRQKCDEA----------G-- 80 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEecccccCHHHHHHHHHHHHHC----------C--
Confidence 4445578889999999999964 45667777764 57899998887664221 1 2233444431 1
Q ss_pred chhhhcccCCCCCcEEEEccC--CcHH----HHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 970 SIEAYENVSNFHVPILAMTAD--VIQA----TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~--~~~~----~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
...++ +++-+. ...+ ...++.++|++......-..+++...+++.+
T Consensus 81 ---------l~~~~-vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 81 ---------LEGIL-LYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred ---------CCCCE-EEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 11333 445443 1122 2456889999999999999999998888765
No 213
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=77.87 E-value=22 Score=37.53 Aligned_cols=121 Identities=10% Similarity=0.137 Sum_probs=75.0
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCc-E-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi-~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
+.+++++|+++......+..|...+. . +..+.+..+++..+.. ..++.+++|.............++..++....
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~- 79 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHFP- 79 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCC-
Confidence 46899999999998888888887654 3 6678888888877654 34688888865543210112334555554321
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
..+++++............ -..|...++.||.....+..++..+..
T Consensus 80 -~~~iIvls~~~~~~~~~~a-~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 80 -SLSIIVLTMNNNPAILSAV-LDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred -CCcEEEEEecCCHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 2344444432222111111 122566889999999999888887653
No 214
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=76.39 E-value=39 Score=30.69 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=70.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCc-EEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi-~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
..+++++++++.........+...|. .+..+.+..+++..... ..++.++++..... .........++......
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~---~~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPN---MDGLELLKTIRADGAMS 79 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCC---CCHHHHHHHHHhCCCcC
Confidence 46889999999999888899999998 47778888888776543 34677777644322 12233444554432222
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l 862 (1033)
...++++............ -..+...++.||+....+...++..+
T Consensus 80 ~~~~i~~~~~~~~~~~~~~-~~~g~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 80 ALPVLMVTAEAKKENIIAA-AQAGASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred CCcEEEEECCCCHHHHHHH-HHhCCCeEEECCCCHHHHHHHHHHHH
Confidence 2223333322111111111 11245678899999888877776654
No 215
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=76.28 E-value=2 Score=53.55 Aligned_cols=51 Identities=29% Similarity=0.539 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCChhhHh--------hccCcccc---cCCCCCCCCCc-ccchHHHHHHHHHHc
Q 001674 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQ---VGPSISRTHGG-TGIGLSISKYLVGRM 688 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q---~d~s~s~~~~G-tGLGLsI~k~Lv~~m 688 (1033)
.|+|.|+|.|||-+..+ -+|.-... .|.+..+..|| .|.|++.+.-+-+.+
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 48999999999976332 23332211 11122222334 699999888777643
No 216
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=76.25 E-value=28 Score=36.55 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=74.3
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++..+......++..|+.+..+.+..+++..+.. ..++.+++|........ ....+...++.... ..|.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~-~g~~~~~~i~~~~~-~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEID-GGFMLCQDLRSLSA-TLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCC-CHHHHHHHHHhcCC-CCCE
Confidence 68999999998888889999999999989898888877654 34678888765533111 12334445544321 1243
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
++ +............ -..+...++.||.....+...++..+.
T Consensus 78 i~-ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 78 IF-LTARDSDFDTVSG-LRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EE-EECCCCHHHHHHH-HhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 33 3222111111111 122566789999999988888877664
No 217
>PRK15115 response regulator GlrR; Provisional
Probab=76.09 E-value=11 Score=44.87 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=78.0
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
..+++++|+++..+......++..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++... ..
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~---g~~ll~~l~~~~--~~ 77 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMD---GMQLFAEIQKVQ--PG 77 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhcC--CC
Confidence 3689999999999999999999999999999999999887754 3468888887653322 223444444322 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
..++++............ -..+...++.||+....+...+..++.
T Consensus 78 ~pvIvlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 78 MPVIILTAHGSIPDAVAA-TQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred CcEEEEECCCCHHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 233333322111111111 122556789999999999988887765
No 218
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=76.03 E-value=13 Score=44.16 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=76.2
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
..+++++|+++..+......+..+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++... ..
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~---G~~~~~~ir~~~--~~ 77 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMD---GIATLKEIKALN--PA 77 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 3689999999999999999999999999999999999887754 3468888887664422 223444444422 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
..++++............. ..+...++.||+....+...+..++.
T Consensus 78 ~~vi~lt~~~~~~~~~~a~-~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 78 IPVLIMTAYSSVETAVEAL-KTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CeEEEEECCCCHHHHHHHH-HhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 2333333221111111111 12455788999999888888776553
No 219
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=75.87 E-value=1.9 Score=54.49 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=23.2
Q ss_pred CceEEec--H-HHHHHHHHHHHHHHHhcc---CCCeEEEEE
Q 001674 543 PETLIGD--P-GRFRQIITNLMGNSIKFT---EKGHIFVTV 577 (1033)
Q Consensus 543 p~~v~gD--~-~rL~QIL~NLl~NAiKfT---~~G~I~v~v 577 (1033)
|...+|+ + .-|.+++.-||+|||.-. ....|.|.+
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i 65 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTI 65 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEE
Confidence 4455554 3 468999999999999832 233555554
No 220
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=75.70 E-value=47 Score=32.71 Aligned_cols=106 Identities=10% Similarity=0.065 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhhCCCEEEEE---eChHHHHHHhCCCCCccEEEEcCCCCCC-CH-HHHHHHHHhhccccccccccccc
Q 001674 895 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 895 n~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG-~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
+..-..++..+|+..||+|+-. ...++-++... ++++|+|.+-.-|... .. -++.+.+|+.
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~-~~~adiVglS~L~t~~~~~~~~~~~~l~~~------------- 77 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-ETDADAILVSSLYGHGEIDCKGLREKCDEA------------- 77 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCCHHHHHHHHHHHHHC-------------
Confidence 3445578889999999999853 45566666664 5789999888766432 22 2444555541
Q ss_pred chhhhcccCCCCCcEEEEccCC--c----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001674 970 SIEAYENVSNFHVPILAMTADV--I----QATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~--~----~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
...++||++ -+.. . .++..+..+.|++......-+++++...+++
T Consensus 78 --------gl~~v~viv-GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~~ 128 (128)
T cd02072 78 --------GLKDILLYV-GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLKK 128 (128)
T ss_pred --------CCCCCeEEE-ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHhC
Confidence 112455543 3331 1 3455678899999999988898888877653
No 221
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=75.50 E-value=23 Score=37.50 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcCCCCCC--CHHHHHHHHHhh
Q 001674 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREM 956 (1033)
Q Consensus 886 ~~~ILIV----DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~ea~~~IR~~ 956 (1033)
+.+||+. |-+..=..++..+|+..||+|.... ..++.++.+. .+.||+|-+-..|+.. +--++.+.+|+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-EHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 3578888 8888888999999999999998532 3455566663 5789999998877654 223444555542
Q ss_pred cccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001674 957 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 957 e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
. .+..++|++--+....+ -+-+.|+|.|-.=
T Consensus 161 ~--------------------~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 161 G--------------------LRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred C--------------------CCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 1 12256776655544432 4667799998753
No 222
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=75.12 E-value=13 Score=50.39 Aligned_cols=118 Identities=17% Similarity=0.281 Sum_probs=79.3
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
..++++||+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++.... ..
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~---g~~~~~~i~~~~~-~~ 1031 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMD---GFELTRKLREQNS-SL 1031 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcCC-CC
Confidence 4689999999999999999999999999999999999988754 4578888886654322 2334445544221 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
|.+++.+.. ......... ..+...++.||+....+...+.+...
T Consensus 1032 pii~lt~~~-~~~~~~~~~-~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1032 PIWGLTANA-QANEREKGL-SCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CEEEEECCC-CHHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 433332221 111111111 23567899999999999888877654
No 223
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=75.07 E-value=20 Score=36.95 Aligned_cols=117 Identities=10% Similarity=0.208 Sum_probs=74.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
++++++|+++.........++..|+.+. .+.+..+++..+.. ..++.+++|....... ...++..++.... .
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~~--~ 73 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 73 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCC---HHHHHHHHHhhCC--C
Confidence 3689999999999888899999999986 68888888877654 3568888876543322 2234444444221 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
..++++............. ..+...++.||.....+...++..+.
T Consensus 74 ~~ii~ls~~~~~~~~~~~~-~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 74 GIIIIVSAKNDHFYGKHCA-DAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CeEEEEeCCCCHHHHHHHH-HCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 2333343222211111111 22566889999999999988888764
No 224
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=75.00 E-value=16 Score=43.99 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=76.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.++++||+++..+......+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++.... ..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~d---gl~~l~~ir~~~~--~~ 76 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMD---GLALLKQIKQRHP--ML 76 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCC---HHHHHHHHHhhCC--CC
Confidence 479999999999999999999999999999999999988754 3468888887654322 2234445544221 22
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++............ -..+...++.||+....+...+...+.
T Consensus 77 pvIvlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 77 PVIIMTAHSDLDAAVSA-YQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred eEEEEECCCCHHHHHHH-HhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 23333322111111111 112566899999998888777766553
No 225
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=74.88 E-value=31 Score=36.90 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=73.9
Q ss_pred cEEEEECCchhhHHHHHHHHHH-cCcE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~-~Gi~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++..+......+.+ .|+. +..+.+..+++..+.. ..++.+++|..+...+ ....+..++....
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~---gle~~~~l~~~~~-- 77 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGR---GINLLHELVQAHY-- 77 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCc---HHHHHHHHHhcCC--
Confidence 6899999999998888888886 4774 6788999999888754 3468888887654332 2334455554221
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l 862 (1033)
...++++............. ..+...++.||.....+...++...
T Consensus 78 ~~~iivls~~~~~~~~~~al-~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 78 PGDVVFTTAASDMETVSEAV-RCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred CCCEEEEEcCCCHHHHHHHH-HcCccEEEECCcCHHHHHHHHHHHH
Confidence 22344443221111111111 2256678999999999988887653
No 226
>PRK13856 two-component response regulator VirG; Provisional
Probab=74.87 E-value=23 Score=37.93 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=74.9
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++..+......|+..|..+..+.+..+++..+.. ..++++++|......+ ...++..++... ..|.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~---g~~l~~~i~~~~--~~pi 75 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGRED---GLEIVRSLATKS--DVPI 75 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCcE
Confidence 68999999999999999999999999999999888876643 4568888876553322 223444454321 2244
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
+++............. -..+...++.||+....+...+...+.
T Consensus 76 i~lt~~~~~~~~~~~~-l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 76 IIISGDRLEEADKVVA-LELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred EEEECCCCcHHHHHHH-HhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 4332211111111111 122566899999999998888877664
No 227
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=74.30 E-value=2.5 Score=52.28 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCChhhHh-----------hccCccccc---CCCCCCCCCcccchHHHHHHHHHHc
Q 001674 638 IVSVEDTGQGIPLEAQS-----------RIFTPFMQV---GPSISRTHGGTGIGLSISKYLVGRM 688 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~-----------~IFepF~q~---d~s~s~~~~GtGLGLsI~k~Lv~~m 688 (1033)
.|+|.|+|.|||-+..+ -+|.-.... +.+..-..|-.|.|.+.|.-|-+.+
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 48999999999986542 223222111 1111112234799999988776655
No 228
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=73.54 E-value=15 Score=35.09 Aligned_cols=93 Identities=25% Similarity=0.294 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcC-CCCCCC-HHHHHHHHHhhccccccccccccc
Q 001674 895 NNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDI-QMPEMD-GFEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 895 n~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi-~MP~md-G~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
.+.-...+..+|++.|++|...+ +.++..+.+. ..+||+|.+.. ..+... ..++++.+|+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~-~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~------------- 78 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR-AERPDVVGISVSMTPNLPEAKRLARAIKER------------- 78 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH-HTTCSEEEEEESSSTHHHHHHHHHHHHHTT-------------
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh-cCCCcEEEEEccCcCcHHHHHHHHHHHHhc-------------
Confidence 35567889999999999998773 3355555553 45799999988 444332 23445555542
Q ss_pred chhhhcccCCCCCcEEEEccCCcHHHHHHHHH--cCCCEEEeCC
Q 001674 970 SIEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKP 1011 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~--aG~ddyl~KP 1011 (1033)
.++++|++==.. -....+++++ .|+|..+.-.
T Consensus 79 ---------~p~~~iv~GG~~-~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 79 ---------NPNIPIVVGGPH-ATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp ---------CTTSEEEEEESS-SGHHHHHHHHHHHTSEEEEEET
T ss_pred ---------CCCCEEEEECCc-hhcChHHHhccCcCcceecCCC
Confidence 335555544433 3444556665 7888877644
No 229
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=73.42 E-value=15 Score=39.03 Aligned_cols=114 Identities=16% Similarity=0.225 Sum_probs=70.9
Q ss_pred EEEEECCchhhHHHHHHHHHHc-CcE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 740 KALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~-Gi~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
+||++||++.-+++.+.+++.. |++ |-.+.+.+++...+..-.. +.+++|.-+. +.+.. .++..++..... .
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~p--DLILLDiYmP--d~~Gi-~lL~~ir~~~~~-~ 75 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKP--DLILLDIYMP--DGNGI-ELLPELRSQHYP-V 75 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCC--CEEEEeeccC--CCccH-HHHHHHHhcCCC-C
Confidence 6899999999999999998875 555 4578889999988875443 7888875443 33322 345555543221 1
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHH
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~ 861 (1033)
..+++ +..+..+.-...-..|+..++.||+....+..+|.+-
T Consensus 76 DVI~i--TAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y 117 (224)
T COG4565 76 DVIVI--TAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRY 117 (224)
T ss_pred CEEEE--eccchHHHHHHHHhcCchhheecceeHHHHHHHHHHH
Confidence 22332 2222111111111125678899999999988877654
No 230
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=73.38 E-value=21 Score=38.34 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=69.6
Q ss_pred CeEEEE----eCCHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcCCCCCC-CH-HHHHHHHHhhc
Q 001674 887 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREME 957 (1033)
Q Consensus 887 ~~ILIV----DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG-~ea~~~IR~~e 957 (1033)
.+|++. |.+..=..++..+|+..|++|+... ..++.++.+. +.++|+|.+-..|+.- .. -++.+++++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~-~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~- 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK-EHKADIIGLSGLLVPSLDEMVEVAEEMNRR- 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEccchhccHHHHHHHHHHHHhc-
Confidence 478888 8888888999999999999998753 3555556553 5789999999888633 22 2344455431
Q ss_pred ccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHH---HHHcCCCEEEeCCC
Q 001674 958 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---CLRSGMDGYVSKPF 1012 (1033)
Q Consensus 958 ~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~---~l~aG~ddyl~KP~ 1012 (1033)
..+++|++--+-..++...+ |-..|+|.|-.-..
T Consensus 167 ---------------------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~ 203 (213)
T cd02069 167 ---------------------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDAS 203 (213)
T ss_pred ---------------------CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHH
Confidence 22577776665555555433 34579999875433
No 231
>PRK13435 response regulator; Provisional
Probab=71.92 E-value=52 Score=32.00 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=72.6
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
..+++++|+++.........+...|+.+. .+++..+++..+.. ..++.+++|....... ....+...+++. .
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~--~~~~~~~~l~~~--~- 77 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGP--TGVEVARRLSAD--G- 77 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCC--cHHHHHHHHHhC--C-
Confidence 46899999999999989999999999876 67888888876643 3568888876543211 112233333332 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l 862 (1033)
...++++...... . .. ...+...++.||+....+...+.+..
T Consensus 78 ~~pii~ls~~~~~--~-~~-~~~ga~~~l~kp~~~~~l~~~i~~~~ 119 (145)
T PRK13435 78 GVEVVFMTGNPER--V-PH-DFAGALGVIAKPYSPRGVARALSYLS 119 (145)
T ss_pred CCCEEEEeCCHHH--H-HH-HhcCcceeEeCCCCHHHHHHHHHHHH
Confidence 2233333332111 1 11 11356688999999999988887775
No 232
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=70.41 E-value=14 Score=44.16 Aligned_cols=115 Identities=17% Similarity=0.329 Sum_probs=76.8
Q ss_pred EEEEECCchhhHHHHHHHHHH--cCcEE-EEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 740 KALVVDPRPIRAKVSRYHIQR--LGIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~--~Gi~v-~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
+|++|||.+..++-.+..+.. +|+.+ ..|.++.+|++.+.. ..+++++.|-.++..+. ..+++.++.. ..
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdG---LdLI~~ike~--~p 75 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDG---LDLIKAIKEQ--SP 75 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcH---HHHHHHHHHh--CC
Confidence 699999999988888877754 57764 578999999998865 45777888776655442 2344555542 22
Q ss_pred CceEEEEeccCCccccCcCCC--CCCCCceeccCCchHHHHHHHHHHhcC
Q 001674 817 QSKLFLLANSISSSRANTSTD--GVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~--~~~~~~~i~kPl~~s~l~~~l~~~l~~ 864 (1033)
+.+.+++. +.+ +++-.+. ..|+...+.||+....+.++|.+..+.
T Consensus 76 ~~~~IILS-Gy~--eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 76 DTEFIILS-GYD--EFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred CceEEEEe-ccc--hhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 34444442 222 2222222 235668999999999999998887753
No 233
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=69.37 E-value=62 Score=34.13 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=74.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|..+..+.+..+++..+.. ..++.+++|....... .......++.. ...|
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~--~~~p 83 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTD---GLTLCREIRRF--SDIP 83 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCCC
Confidence 379999999999999999999999999999999888887653 3467888876553322 22344444432 1223
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.+ ++............ -..+...++.||+....+...+...+.
T Consensus 84 ii-~l~~~~~~~~~~~~-~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 84 IV-MVTAKIEEIDRLLG-LEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred EE-EEEcCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 33 33322211111111 122456789999999888877776654
No 234
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=68.91 E-value=32 Score=41.09 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=76.2
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
+.+++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|..+...+ ...++..++.... ..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~---g~~ll~~i~~~~~-~~ 77 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMD---GIKALKEMRSHET-RT 77 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcCC-CC
Confidence 3579999999999998899999999999999999999887754 3468888886654322 2334455544321 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
+.+ ++............. ..+...++.||+....+...+...+.
T Consensus 78 pvI-~lt~~~~~~~~~~a~-~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 78 PVI-LMTAYAEVETAVEAL-RCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CEE-EEeCCCCHHHHHHHH-HCCccEEEecccCHHHHHHHHhhhcc
Confidence 333 332211111111111 12566789999998888887776654
No 235
>PRK14084 two-component response regulator; Provisional
Probab=68.60 E-value=44 Score=35.89 Aligned_cols=115 Identities=14% Similarity=0.307 Sum_probs=73.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHcC-c-EEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLG-I-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~G-i-~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
++++++|+++..+......+...+ + .+..+.+..+++..+.. ..++.+++|..+...+ .......++... .
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~---G~~~~~~i~~~~--~ 73 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDES---GIELAAKIQKMK--E 73 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--C
Confidence 368999999998888888898876 3 46678898888887754 3578888887664332 233444454422 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.+.++.++. .... .... -..+...++.||+....+..++.+...
T Consensus 74 ~~~iI~~t~-~~~~-~~~~-~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 74 PPAIIFATA-HDQF-AVKA-FELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred CCEEEEEec-ChHH-HHHH-HhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 233333332 2211 1111 122456789999999999988887763
No 236
>PRK09483 response regulator; Provisional
Probab=67.83 E-value=37 Score=35.26 Aligned_cols=117 Identities=9% Similarity=0.131 Sum_probs=73.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHc-CcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~-Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++..+......++.. |+.+. .+.+..+++..+.. ..++.+++|......+ ....+..++....
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~~-- 74 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIG---GLEATRKILRYTP-- 74 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHCC--
Confidence 36899999999998888888875 78765 67888888877654 4568888887654322 2234444443221
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
..+++++............. ..+...++.||.....+..++..++.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 75 DVKIIMLTVHTENPLPAKVM-QAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred CCeEEEEeCCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 23344443322211111111 12566789999999999988887764
No 237
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=67.62 E-value=37 Score=35.24 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=72.2
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++.........+...|..+..+.+..++...+.. ..++.+++|....... .......++.... ...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~---~~~~~~~i~~~~~--~~~ 74 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMD---GLEVLQRLRKRGQ--TLP 74 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCc---HHHHHHHHHhcCC--CCC
Confidence 68899999988888888899999999888888888766543 3467787776543221 2233444443321 222
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
++++............. ..+...++.||.....+...+...+.
T Consensus 75 ii~lt~~~~~~~~~~~~-~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 75 VLLLTARSAVADRVKGL-NVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred EEEEECCCCHHHHHHHH-HcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 33333221111111111 12566789999999998888877664
No 238
>PRK09191 two-component response regulator; Provisional
Probab=66.87 E-value=63 Score=34.96 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=73.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
.+++++|+++..+......++..|+.+. .+.+..+++..+.. ..++.+++|....... .....+..++... ..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~--~g~e~l~~l~~~~--~~ 211 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGS--SGIDAVNDILKTF--DV 211 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCC--CHHHHHHHHHHhC--CC
Confidence 4689999999999999999999999887 67888888877654 4578888887653211 1223344444432 22
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
|.++ +... ..... .....+...++.||+....+...+.+.+.
T Consensus 212 pii~-ls~~-~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 212 PVIF-ITAF-PERLL--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred CEEE-EeCC-CcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 4333 3221 11111 01111234578999999999998887654
No 239
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=66.09 E-value=44 Score=31.49 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=60.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeCh-HHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccc
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g-~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
.++.++|.++... ..+...|+.+...+-. .+.++.+ .-...+.+++...-. ..-+.++..+|++.
T Consensus 22 ~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~a-~i~~a~~vv~~~~~d-~~n~~~~~~~r~~~-------- 87 (116)
T PF02254_consen 22 IDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLERA-GIEKADAVVILTDDD-EENLLIALLARELN-------- 87 (116)
T ss_dssp SEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHHT-TGGCESEEEEESSSH-HHHHHHHHHHHHHT--------
T ss_pred CEEEEEECCcHHH----HHHHhcccccccccchhhhHHhhc-CccccCEEEEccCCH-HHHHHHHHHHHHHC--------
Confidence 4799999998764 3445567887765544 3445555 345689888877633 34466777888742
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+..+|++... +.+......++|+|..+.
T Consensus 88 --------------~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 88 --------------PDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp --------------TTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred --------------CCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 3467887664 345566677899988764
No 240
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=65.42 E-value=7 Score=47.84 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=28.5
Q ss_pred EEEEEEEcCCCCChhhHhhccC--------ccccc---CCCCCCCCCcccchHHHHHHHH
Q 001674 637 LIVSVEDTGQGIPLEAQSRIFT--------PFMQV---GPSISRTHGGTGIGLSISKYLV 685 (1033)
Q Consensus 637 l~i~V~DtG~GI~~e~~~~IFe--------pF~q~---d~s~s~~~~GtGLGLsI~k~Lv 685 (1033)
-.++|+||||||+.++...-.- .|.+. +...+.--|-.|+|++=|--.+
T Consensus 74 kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeee
Confidence 3689999999999987543211 12111 1111233466788988654443
No 241
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=64.75 E-value=23 Score=46.31 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=33.7
Q ss_pred CcccCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecC
Q 001674 733 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770 (1033)
Q Consensus 733 ~~~~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~ 770 (1033)
...+.|.+++++|+++..+.+....|+++|+.|..+++
T Consensus 684 ~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~ 721 (894)
T PRK10618 684 EKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDE 721 (894)
T ss_pred cccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 34578999999999999999999999999999988765
No 242
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=64.14 E-value=2.3e+02 Score=31.11 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHHHHHhc
Q 001674 549 DPGRFRQIITNLMGNSIKF 567 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKf 567 (1033)
...++...|.+..+..+.+
T Consensus 191 ~~~~i~~~l~~~~~~~v~~ 209 (246)
T TIGR03321 191 QREQIRDTIRETLGPEIRL 209 (246)
T ss_pred HHHHHHHHHHHHHCCCeeE
Confidence 4556666666666544433
No 243
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=64.08 E-value=45 Score=34.52 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=72.1
Q ss_pred EEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceE
Q 001674 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820 (1033)
Q Consensus 741 vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1033)
++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|......+ ....+..++.... ...+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~~--~~~i 73 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMD---GWQILQTLRRSGK--QTPV 73 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHccCC--CCcE
Confidence 3678888888888888889999999999999998877644 3477888876543321 2234444443221 2233
Q ss_pred EEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 821 ~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
+++............. ..+...++.||.....+...+...+.
T Consensus 74 ivls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 74 LFLTARDSVADKVKGL-DLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred EEEEcCCCHHHHHHHH-HcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 3333222211111111 12566789999999999888877664
No 244
>PRK13557 histidine kinase; Provisional
Probab=63.65 E-value=72 Score=38.42 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=78.0
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 736 ~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+.+++++++++.........++..|+.+..+.+..+++..+.. ...++++++|...... ......+..++....
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~--~~~~~~~~~l~~~~~- 488 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS-HPEVDLLFTDLIMPGG--MNGVMLAREARRRQP- 488 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-CCCceEEEEeccCCCC--CCHHHHHHHHHHhCC-
Confidence 456789999999999999999999999999999999999887643 2357788887655431 112234444444221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
...++++........... ....+...++.||+....+...+...+.
T Consensus 489 -~~~ii~~~~~~~~~~~~~-~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 489 -KIKVLLTTGYAEASIERT-DAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred -CCcEEEEcCCCchhhhhh-hccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 223333332222111111 1122445689999999999888887664
No 245
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=62.96 E-value=70 Score=34.19 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=73.9
Q ss_pred EEEEECCchhhHHHHHHHHHHcC-cEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLG-IQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~G-i~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
+++++||.+..+.-.+..|...+ ++|. .+.+..+++... .....+.+++|..+...+ ....+..+++... .
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~--~~~~pdvvl~Dl~mP~~~---G~e~~~~l~~~~p--~ 74 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA--RELKPDVVLLDLSMPGMD---GLEALKQLRARGP--D 74 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh--hhcCCCEEEEcCCCCCCC---hHHHHHHHHHHCC--C
Confidence 58999999999998888887776 6644 556688888763 335678888886554422 2334455553222 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++++............. .|...++.|......+..+++.+..
T Consensus 75 ~~vvvlt~~~~~~~v~~al~-~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 75 IKVVVLTAHDDPAYVIRALR-AGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred CcEEEEeccCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 24555544333222222222 2566789999999999999888774
No 246
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.69 E-value=46 Score=37.23 Aligned_cols=114 Identities=16% Similarity=0.256 Sum_probs=74.1
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
++++||++..........|.+.|-.+..++...+++..+... .+|.+++|-.+.... ...+++..+.... .-+.
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~n---giefaeQvr~i~~-~v~i 75 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMN---GIEFAEQVRDIES-AVPI 75 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCcc---HHHHHHHHHHhhc-cCcE
Confidence 689999999999999999999998888999999999887653 456666665543222 2235555554331 1133
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
+++. +.. +......+......++||+....|..++.+...
T Consensus 76 ifIs--sh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 76 IFIS--SHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred EEEe--cch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 3332 211 111111111224789999999999988877663
No 247
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=61.13 E-value=68 Score=34.14 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=72.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcC-cE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~G-i~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
++++++|+++..+......+..+| .. +..+.+..+++..+.. ..++++++|.++...+ .......++. ..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~---G~~~~~~l~~---~~ 73 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRIS---GLELVGMLDP---EH 73 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHhcc---cC
Confidence 478999999999998889999888 33 4567888888877654 3578889887765432 1223333321 11
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.+.+++++.. ... .... -..+...++.||+....+..++.++..
T Consensus 74 ~~~ii~vt~~-~~~-~~~a-~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 74 MPYIVFVTAF-DEY-AIKA-FEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred CCEEEEEecc-HHH-HHHH-HhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2444444322 211 1111 112455789999999999888887764
No 248
>PLN03237 DNA topoisomerase 2; Provisional
Probab=60.25 E-value=14 Score=49.61 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCChhhHh--------hccCccccc---CCCCCCCCCc-ccchHHHHHHHHHHcCC
Q 001674 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKG 690 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---d~s~s~~~~G-tGLGLsI~k~Lv~~mgG 690 (1033)
.|+|.|+|.|||-+..+ -||...... |.+..+..|| .|.|.+.|.-+-+.+--
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~V 176 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVI 176 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEE
Confidence 48999999999986432 244433321 1111223344 69999998887765533
No 249
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=58.30 E-value=61 Score=32.84 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=70.9
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
..++|||+..........+++-|+.|..+.+..+++........ ....+|..+-. ......+..++.... ...
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~P--ayAvvDlkL~~---gsGL~~i~~lr~~~~--d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPP--AYAVVDLKLGD---GSGLAVIEALRERRA--DMR 83 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCC--ceEEEEeeecC---CCchHHHHHHHhcCC--cce
Confidence 57899999999999999999999999999999999988765443 33334433222 223345555554332 244
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHH
Q 001674 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~ 861 (1033)
++++.--.+-..+-.... .|...++.||-....+...+.+.
T Consensus 84 ivvLTGy~sIATAV~AvK-lGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 84 IVVLTGYASIATAVEAVK-LGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEEEecchHHHHHHHHHH-hhhhhhcCCCCChHHHHHHHhhc
Confidence 444432111111111111 13446889999988887777654
No 250
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=57.21 E-value=88 Score=33.49 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHHhh-CCCEEE-EEeChHHHHHHhCCCCCccEEEEcCC-------CCCCCHHHHHHHHHhhcccccccccccccchh
Q 001674 902 AAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 902 l~~~L~~-~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~-------MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
+....++ .|..+. .+.+.+++.... ...+|+|..... .+.-.+++.+++|++.
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~--~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~---------------- 171 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQ--KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA---------------- 171 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHH--HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh----------------
Confidence 3444455 566554 345667775544 345888855321 1223347788888762
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.++||++..+-.+.++..++++.|+|+++.
T Consensus 172 -------~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 -------VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred -------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 158999988888899999999999998864
No 251
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=55.41 E-value=1.4e+02 Score=31.43 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=59.4
Q ss_pred hCCCEEEE-EeChHHHHHHhCCCCCccEEEEcCCCCCC--------CHHHHHHHHHhhcccccccccccccchhhhcccC
Q 001674 908 RYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEM--------DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 978 (1033)
Q Consensus 908 ~~g~~v~~-a~~g~eAl~~l~~~~~~DlIlmDi~MP~m--------dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~ 978 (1033)
..|..+-. +.+-.++.+.. ....|+|...--.|.. .|++..+++++.
T Consensus 102 ~~~~~~g~~~~t~~e~~~a~--~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------- 157 (212)
T PRK00043 102 GPDAIIGLSTHTLEEAAAAL--AAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA---------------------- 157 (212)
T ss_pred CCCCEEEEeCCCHHHHHHHh--HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------
Confidence 34444433 34555666654 2468999876555533 468888888763
Q ss_pred CCCCcEEEEccCCcHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHhh
Q 001674 979 NFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSRF 1024 (1033)
Q Consensus 979 ~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r~ 1024 (1033)
..++||++.-+- ..++..+++++|+|++.. +.-++.+..+.+.+.
T Consensus 158 ~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~ 207 (212)
T PRK00043 158 VGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAA 207 (212)
T ss_pred cCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHH
Confidence 123888877654 678899999999999985 545665555554443
No 252
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=55.35 E-value=70 Score=27.32 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=61.1
Q ss_pred EECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEE
Q 001674 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822 (1033)
Q Consensus 743 vvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 822 (1033)
++++++.........+...|..+..+.+..+++..+.. ..++.++++....... .......++.. .. ....++
T Consensus 2 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~---~~~~~~~l~~~-~~-~~~~i~ 74 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMD---GLELLRRIRKR-GP-DIPIIF 74 (113)
T ss_pred eecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCc---hHHHHHHHHHh-CC-CCCEEE
Confidence 56777777777778888889999888888888776644 3567777765543322 12233444433 11 222333
Q ss_pred EeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHH
Q 001674 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (1033)
Q Consensus 823 l~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~ 860 (1033)
+............. ..+...++.+|.....+...+..
T Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 75 LTAHGDDEDAVEAL-KAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred EEecccHHHHHHHH-HcChhhHccCCCCHHHHHHHHHh
Confidence 32211111110111 12345677888888777766653
No 253
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=54.38 E-value=63 Score=38.46 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=69.5
Q ss_pred EEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccC--ccchHHHHHHHhhcCCCCCc
Q 001674 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 741 vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++|+++..+......+ .|+.+..+.+..+++..+... .++++++|..+.... .......+..++.... ..|
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~-~~p 75 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAP-DTK 75 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCC-CCC
Confidence 468888887777666666 789999999999999887643 578888887654311 1122334444444221 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.++ ++............. .+...++.||+....+...+..++.
T Consensus 76 iI~-lt~~~~~~~~~~a~~-~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 76 VIV-ITGNDDRENAVKAIG-LGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEE-EecCCCHHHHHHHHH-CCccEEEeCCCCHHHHHHHHhhhhh
Confidence 333 322211111111111 2556789999999888877766553
No 254
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=54.12 E-value=40 Score=33.71 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=44.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEe----ChHHHHHHhCCCCCccEEEEcCCCCC
Q 001674 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE----RGKKATELLMPPHQFDACFMDIQMPE 943 (1033)
Q Consensus 884 ~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~----~g~eAl~~l~~~~~~DlIlmDi~MP~ 943 (1033)
+.|++|+|+..+....+-+..+|.+.|+.|..++ |.+++++ .-|+|+.-.--|.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh------hCCEEEEecCCCC
Confidence 5689999999999999999999999999999988 4444432 3699998887664
No 255
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=53.46 E-value=79 Score=32.15 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=69.2
Q ss_pred EEEEECCchhhHHHHHHHHHHc-CcE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001674 740 KALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~-Gi~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
+++++|+++.........+... +.. +..+++..+++..+.. ..++.+++|......+ ...++..++. .
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~-----~ 72 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDIS---GLELLSQLPK-----G 72 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHcc-----C
Confidence 6899999998888777777653 565 4677888888877653 3467888876543322 1223333321 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
..++++............. ..+...++.||+....+...+..++.
T Consensus 73 ~~vi~~s~~~~~~~~~~~~-~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 73 MATIMLSVHDSPALVEQAL-NAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCEEEEECCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 2344443322211111111 12566789999999999988887774
No 256
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=53.07 E-value=65 Score=32.44 Aligned_cols=117 Identities=14% Similarity=0.197 Sum_probs=71.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|..+..+.+..+++..+.. ..++.+++|......+ ....+..++... . ..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~---~~~~~~~l~~~~-~-~~ 76 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGID---GIELLRRLKARG-S-PL 76 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCc---HHHHHHHHHhcC-C-CC
Confidence 468999999998888888999999999988888888766543 3467777776543221 223444444322 1 22
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++............. ..+...++.||.....+...+...+.
T Consensus 77 ~ii~l~~~~~~~~~~~~~-~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 77 PVIVMTGHGDVPLAVEAM-KLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred CEEEEECCCCHHHHHHHH-HcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 233333221111111111 12445678899998888877776654
No 257
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=52.93 E-value=1.1e+02 Score=31.27 Aligned_cols=118 Identities=12% Similarity=0.213 Sum_probs=71.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHc-CcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~-Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+++++|+++.........+... ++.+. .+.+..+++..+.. ..++++++|......+ ...+...++....
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~- 76 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTD---GFTFLKRIKQIQS- 76 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHhCC-
Confidence 357899999999888888888876 57764 56777777766543 4578888876553322 2234444444221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
...++++............. ..+...++.||+....+...+...+.
T Consensus 77 -~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 77 -TVKVLFLSSKSECFYAGRAI-QAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred -CCcEEEEECCCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 12233333222111111111 12556789999999999988887764
No 258
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.91 E-value=38 Score=37.49 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=34.0
Q ss_pred CCCcEEEEccC------CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001674 980 FHVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 980 ~~iPIIalTa~------~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
..+|+++||=. ..+...++|.++|+|+.|.-.+..++....+.+
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~ 137 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAA 137 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH
Confidence 36899999843 555678999999999999987777766655543
No 259
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=52.68 E-value=19 Score=37.72 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=44.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCE---EEEEeChHHHHHHh-CCCCCccEEEEcCCCCCCCH-HHHHHHHHh
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAA---VVCVERGKKATELL-MPPHQFDACFMDIQMPEMDG-FEATKIIRE 955 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~---v~~a~~g~eAl~~l-~~~~~~DlIlmDi~MP~mdG-~ea~~~IR~ 955 (1033)
+++..||-|+.....++.-+++.|.. .+...|...++... .....||+||+|---..... .+++..|.+
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAE 139 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHH
Confidence 58999999999999999999988743 34456666677654 23568999999952222222 446666653
No 260
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=52.20 E-value=56 Score=36.60 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=51.8
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+.+-++|.+.+. ..+|+|.+| +|+.-+=-++.+.+|+. .++ .++..++..
T Consensus 191 IeVEv~tleea~ea~~--~GaDiI~lD-n~~~e~l~~~v~~l~~~----------------------~~~-~~leasGGI 244 (277)
T TIGR01334 191 ITVEADTIEQALTVLQ--ASPDILQLD-KFTPQQLHHLHERLKFF----------------------DHI-PTLAAAGGI 244 (277)
T ss_pred EEEECCCHHHHHHHHH--cCcCEEEEC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 4456789999999884 469999999 55555555555555531 112 378899999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001674 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-+.
T Consensus 245 ~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 245 NPENIADYIEAGIDLFI 261 (277)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998653
No 261
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=52.17 E-value=92 Score=32.92 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=61.6
Q ss_pred eEEEE----eCCHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcCCCCCCC-H-HHHHHHHHhhcc
Q 001674 888 KILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD-G-FEATKIIREMEH 958 (1033)
Q Consensus 888 ~ILIV----DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~md-G-~ea~~~IR~~e~ 958 (1033)
+|++. |.+..-..++..+|+..||+|.... ..++.++.+. ...||+|-+-..|+.-- . -++.+.+|+..
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~- 163 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-KEKPLMLTGSALMTTTMYGQKDINDKLKEEG- 163 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEccccccCHHHHHHHHHHHHHcC-
Confidence 55544 5666777888999999999999643 3455566663 57899999988776442 2 23445555421
Q ss_pred cccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 959 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 959 ~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
....++|++--+...+ .-|.+.|+|.|-.
T Consensus 164 -------------------~~~~v~i~vGG~~~~~---~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 -------------------YRDSVKFMVGGAPVTQ---DWADKIGADVYGE 192 (197)
T ss_pred -------------------CCCCCEEEEEChhcCH---HHHHHhCCcEEeC
Confidence 1224565544333332 3466789999965
No 262
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=52.04 E-value=97 Score=29.46 Aligned_cols=33 Identities=33% Similarity=0.298 Sum_probs=29.9
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHH
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~ 772 (1033)
|++++|++..|+.-....|.-+|.+++.+++..
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~ 33 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD 33 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH
Confidence 589999999999999999999999999988643
No 263
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=50.29 E-value=1.2e+02 Score=32.68 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=47.0
Q ss_pred HHHHHHhCCCCCcc-EEEEcCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHH
Q 001674 920 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 995 (1033)
Q Consensus 920 ~eAl~~l~~~~~~D-lIlmDi~MP~m-dG--~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~ 995 (1033)
.+.++.+. +...| ++++|+.--++ .| +++++++++. ..+||++--+-.+.++
T Consensus 148 ~~~~~~~~-~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvia~GGi~~~~d 203 (230)
T TIGR00007 148 EELAKRLE-ELGLEGIIYTDISRDGTLSGPNFELTKELVKA-----------------------VNVPVIASGGVSSIDD 203 (230)
T ss_pred HHHHHHHH-hCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 33444443 34577 77788854332 22 6777887752 2589999999999999
Q ss_pred HHHHHHcCCCEEEe
Q 001674 996 YEECLRSGMDGYVS 1009 (1033)
Q Consensus 996 ~~~~l~aG~ddyl~ 1009 (1033)
..++++.|+|+++.
T Consensus 204 i~~~~~~Gadgv~i 217 (230)
T TIGR00007 204 LIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999875
No 264
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=50.22 E-value=95 Score=38.82 Aligned_cols=95 Identities=15% Similarity=0.240 Sum_probs=63.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHH-HHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK-ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~e-Al~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+..+.++|.|+...+. +++.|+.+...+-.+. .++.. .-++.|+++.-..=++. -..+++.+|+.
T Consensus 423 g~~vvvID~d~~~v~~----~~~~g~~v~~GDat~~~~L~~a-gi~~A~~vv~~~~d~~~-n~~i~~~~r~~-------- 488 (601)
T PRK03659 423 KMRITVLERDISAVNL----MRKYGYKVYYGDATQLELLRAA-GAEKAEAIVITCNEPED-TMKIVELCQQH-------- 488 (601)
T ss_pred CCCEEEEECCHHHHHH----HHhCCCeEEEeeCCCHHHHHhc-CCccCCEEEEEeCCHHH-HHHHHHHHHHH--------
Confidence 4569999999875543 3557888888765554 34443 33567888776654332 34566777763
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
+++++||+-+. +.+..++..++|+|..+.-
T Consensus 489 --------------~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 489 --------------FPHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred --------------CCCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 34678887665 4566777889999988754
No 265
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=49.93 E-value=98 Score=39.44 Aligned_cols=110 Identities=8% Similarity=0.064 Sum_probs=74.8
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---eChHHHHHHhCCCCCccEEEEcCCCCCC--CHHHHHHHHHhhccccccccccc
Q 001674 893 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
|.+..-...+..+|+..|++|+.- .+.++.++... .+.+|+|.+-..+... ..-++++.+|+..
T Consensus 593 d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~-~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G---------- 661 (714)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV-ENDVHVVGVSSLAAGHKTLVPALIEALKKLG---------- 661 (714)
T ss_pred cchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH-HcCCCEEEEeccchhhHHHHHHHHHHHHhcC----------
Confidence 445555678889999999999643 34667777774 4678998876655432 2345666666521
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
..+++|+ +-+....++.+.+.++|+|+|+..=.+..+....+.+.+
T Consensus 662 -----------~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 662 -----------REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred -----------CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 1134333 445434555677889999999999999988888877655
No 266
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=49.52 E-value=53 Score=35.48 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=42.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCE--EEEEe--ChHHHHHHhCCCCCccEEEEcCCCC
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAA--VVCVE--RGKKATELLMPPHQFDACFMDIQMP 942 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~--v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP 942 (1033)
-+|.-+|-|+...+.+++.+++.|.. +.... +..+.++.. ....||+||+|..=+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK~ 143 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADKA 143 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCChh
Confidence 38999999999999999999999963 44544 555555542 247899999998644
No 267
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=48.97 E-value=1.8e+02 Score=31.06 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=53.7
Q ss_pred HHHhhCC-CEE-EEEeChHHHHHHhCCCCCccEEEEcCC-------CCCCCHHHHHHHHHhhcccccccccccccchhhh
Q 001674 904 AGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAY 974 (1033)
Q Consensus 904 ~~L~~~g-~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~-------MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~ 974 (1033)
..+++.| ..+ ..+.+..++..... ..+|+|..... .+...+++.++++++.
T Consensus 116 ~~~~~~g~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~------------------ 175 (219)
T cd04729 116 KRIHEEYNCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA------------------ 175 (219)
T ss_pred HHHHHHhCCeEEEECCCHHHHHHHHH--cCCCEEEccCccccccccCCCCCCHHHHHHHHHh------------------
Confidence 3344444 443 34566777766553 45888754211 1223357888888862
Q ss_pred cccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 975 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 975 ~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
..+||++..+-.+.++..++++.|+|+.+.
T Consensus 176 -----~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 176 -----LGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred -----cCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 158999988877899999999999999875
No 268
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.18 E-value=1.5e+02 Score=33.21 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=60.8
Q ss_pred eEEEEeCCHHHHHHHHHHHhh---CC---CEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKR---YG---AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~---~g---~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~ 961 (1033)
.|||-|++-... .+...+++ .. -..+.+++-+||.+.+. ...|+|.+|=..|+ +=-++.+.+++..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~--agaDiI~LDn~~~e-~l~~~v~~l~~~~---- 227 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK--AGADIIMLDNMTPE-EIREVIEALKREG---- 227 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH--cCcCEEEECCCCHH-HHHHHHHHHHhcC----
Confidence 478777775443 34444432 22 24456789999999884 46899999954332 2223333343310
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE
Q 001674 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
..++ ..+..++....+...+..+.|+|.+.
T Consensus 228 ----------------~~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 228 ----------------LRER-VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred ----------------cCCC-EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 0112 46788999999999999999998765
No 269
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.91 E-value=1.8e+02 Score=35.88 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=65.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChH-HHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~-eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+..+.++|.|+...+.+ ++.|+.+.+.+-.+ +.++.. .-++.|.++....=...+ ..++..+|+.
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a-~i~~a~~viv~~~~~~~~-~~iv~~~~~~-------- 505 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLA-HLDCARWLLLTIPNGYEA-GEIVASAREK-------- 505 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhc-CccccCEEEEEcCChHHH-HHHHHHHHHH--------
Confidence 45689999988654433 45788888776443 445544 235688777654322211 2344555653
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
+++.+||+-+.+ .+..+...++|+|..+. ..+++.+.+.+.+..
T Consensus 506 --------------~~~~~iiar~~~--~~~~~~l~~~Gad~vv~---p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 506 --------------RPDIEIIARAHY--DDEVAYITERGANQVVM---GEREIARTMLELLET 549 (558)
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHcCCCEEEC---hHHHHHHHHHHHhcC
Confidence 235788887653 45666677899997773 344555566665544
No 270
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=47.75 E-value=1.2e+02 Score=26.81 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=47.6
Q ss_pred hHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHHHHHHH
Q 001674 444 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523 (1033)
Q Consensus 444 vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v~~~~ 523 (1033)
+.|-+||-|..|.+++.+-.....+++.++.+..+......+.. +.+.|--+ + ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~-vh~~L~~~----~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIAL-VHEQLYQS----E----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcC----C----CCCeecHHHHHHHHHHHH
Confidence 57999999999999999876665666656666555555444432 33333221 1 124589999999888765
Q ss_pred H
Q 001674 524 S 524 (1033)
Q Consensus 524 ~ 524 (1033)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 271
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=47.57 E-value=34 Score=42.14 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=31.9
Q ss_pred eEEEEEEEcCCCCChhhHhhccCcccccC------CCCCCCCCcccchHH
Q 001674 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVG------PSISRTHGGTGIGLS 679 (1033)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~d------~s~s~~~~GtGLGLs 679 (1033)
...|.|.|+|.|+..+++..+=++|+..+ ..+.+.+|=-|=.|+
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeALa 98 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEALA 98 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhhh
Confidence 35689999999999999999988887643 233455554554444
No 272
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=47.56 E-value=32 Score=36.17 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=41.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcC
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi 939 (1033)
++||+||...-.---+..+|+..|++|.+..|....++.+ ....||.|++--
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~-~~~~pd~iviSP 53 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELI-EALKPDAIVISP 53 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHH-hhcCCCEEEEcC
Confidence 4799999999999999999999999999888874333334 235689999864
No 273
>PLN02591 tryptophan synthase
Probab=46.59 E-value=55 Score=36.10 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCcEEEEccCC------cHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001674 981 HVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 981 ~iPIIalTa~~------~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
++|+|+||=.. .+.-..+|.++|+|+.|.-.+..++......++
T Consensus 78 ~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 78 SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 57999888544 355688899999999999988888776655543
No 274
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.27 E-value=2.1e+02 Score=26.44 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=44.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEE------eChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhh
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCV------ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 956 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a------~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~ 956 (1033)
+||||-..+.+...++..++++|++.... ......++... ...|+|++=.. .-+-.++..+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~---~vsH~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTD---YVSHNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeC---CcChHHHHHHHHH
Confidence 48999998888899999999999998888 22222244332 34688876432 3446667777764
No 275
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=46.16 E-value=50 Score=35.28 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=42.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCC--EEE-EEeChHHHHHHhCCC---CCccEEEEcCC
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQ 940 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eAl~~l~~~---~~~DlIlmDi~ 940 (1033)
+-+|.-+|-|+...+.++..+++.|+ .|. ...++.+.+..+... .+||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 35899999999999999999999886 344 346677777765322 36999999985
No 276
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.91 E-value=2.2e+02 Score=28.67 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=77.1
Q ss_pred EeCCHHHHHHHHHHHhhCCCEEEE---EeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccc
Q 001674 892 VDDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 892 VDDn~~n~~vl~~~L~~~g~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
.|-+..-.+++...|+..|++|+. ..++.|++.... ++..|+|.+... .-...+++..+++.-++ .|
T Consensus 22 lDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~-~~dv~vIgvSsl--~g~h~~l~~~lve~lre------~G- 91 (143)
T COG2185 22 LDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV-EEDVDVIGVSSL--DGGHLTLVPGLVEALRE------AG- 91 (143)
T ss_pred ccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH-hcCCCEEEEEec--cchHHHHHHHHHHHHHH------hC-
Confidence 366666779999999999999995 568899998874 467898877542 22334555655543211 01
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
..++. +.+-+.-..++..+..+.|++.++.-=....+....|..-+
T Consensus 92 ----------~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 92 ----------VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred ----------CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 12333 35566666777888888999999988777777666655443
No 277
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=45.85 E-value=25 Score=42.45 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCChhhHhhccCccccc
Q 001674 638 IVSVEDTGQGIPLEAQSRIFTPFMQV 663 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (1033)
.+.|+|+|.||-.++++-+-++|.+.
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhh
Confidence 47899999999999999999999754
No 278
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.43 E-value=1.3e+02 Score=32.69 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=43.9
Q ss_pred ccEEEEcCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE
Q 001674 932 FDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 932 ~DlIlmDi~MP~m-dG--~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
-.+|++|+..-++ .| +++++++++. .++||++--+-.+.++..++++.|+++.+
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~-----------------------~~ipvi~~GGi~s~edi~~l~~~G~~~vi 219 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKA-----------------------TTIPVIASGGIRHQQDIQRLASLNVHAAI 219 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 3699999976544 33 5667777652 25899999999999999999999999987
Q ss_pred e
Q 001674 1009 S 1009 (1033)
Q Consensus 1009 ~ 1009 (1033)
.
T Consensus 220 v 220 (234)
T PRK13587 220 I 220 (234)
T ss_pred E
Confidence 5
No 279
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=45.14 E-value=2.7e+02 Score=29.64 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=51.9
Q ss_pred HhhCCCEEEE-EeChHHHHHHhCCCCCccEEEEc---CCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCC
Q 001674 906 LKRYGAAVVC-VERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 981 (1033)
Q Consensus 906 L~~~g~~v~~-a~~g~eAl~~l~~~~~~DlIlmD---i~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~ 981 (1033)
....|.++.. +.+-+++.+.. ...+|.+..- ..... .+++.++++++.- ...
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~--~~g~~~i~~t~~~~~~~~-~~~~~~~~l~~~~---------------------~~~ 172 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERAL--ALGAKIIGINNRDLKTFE-VDLNTTERLAPLI---------------------PKD 172 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHH--HcCCCEEEEeCCCccccC-cCHHHHHHHHHhC---------------------CCC
Confidence 3557887643 44555544444 2457776443 11112 2357778777521 125
Q ss_pred CcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 982 VPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 982 iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+|+++..+-...++..+++++|+|+++.
T Consensus 173 ~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 173 VILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 7999999999999999999999999864
No 280
>PLN03128 DNA topoisomerase 2; Provisional
Probab=44.97 E-value=30 Score=45.97 Aligned_cols=50 Identities=28% Similarity=0.552 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCChhhHh--------hccCccccc---CCCCCCCCCc-ccchHHHHHHHHHH
Q 001674 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 687 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---d~s~s~~~~G-tGLGLsI~k~Lv~~ 687 (1033)
.|+|.|+|.|||-+..+ -||...... |....+..|| .|.|.+.|.-+-+.
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~ 148 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE 148 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCe
Confidence 48999999999976432 234333221 1111222344 58999887766554
No 281
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=44.01 E-value=3.1e+02 Score=30.38 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=66.4
Q ss_pred EEEeC-CHHHHHHHHHHHhhCCCEEE-EEeChHHHHHHhCCCCCccEEEEcC---CCCCCCHHHHHHHHHhhcccccccc
Q 001674 890 LIVDD-NNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDI---QMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 890 LIVDD-n~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi---~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
|++.+ .+.....+....+.+|.++. .+.|.+|+..... ..+|+|-..- +.-.-| ++.+.++...-+
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~--~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p------ 209 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK--LGAPLIGINNRNLKTFEVD-LETTERLAPLIP------ 209 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEECCCCcccccCC-HHHHHHHHHhCC------
Confidence 44444 34445555556667887654 5777777765542 3578775431 122233 666777765211
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHH
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLY 1018 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~ 1018 (1033)
...|+|+.++-...++..++.++|+|+++ .||-++.+..
T Consensus 210 ---------------~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~ 253 (260)
T PRK00278 210 ---------------SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAAL 253 (260)
T ss_pred ---------------CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHH
Confidence 13589999999999999999999999975 4555554443
No 282
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=44.01 E-value=1.3e+02 Score=32.60 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=48.7
Q ss_pred hHHHHHHhCCCCCccEEEEcCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHH
Q 001674 919 GKKATELLMPPHQFDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 995 (1033)
Q Consensus 919 g~eAl~~l~~~~~~DlIlmDi~MP~m-dG--~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~ 995 (1033)
..+.++.+.. ..-.++++|+..-++ .| ++++++|.+. ..+||++--+-.+.++
T Consensus 148 ~~~~~~~~~~-~~~~li~~di~~~G~~~g~~~~~~~~i~~~-----------------------~~ipvi~~GGi~s~ed 203 (233)
T cd04723 148 PEELLRRLAK-WPEELIVLDIDRVGSGQGPDLELLERLAAR-----------------------ADIPVIAAGGVRSVED 203 (233)
T ss_pred HHHHHHHHHH-hCCeEEEEEcCccccCCCcCHHHHHHHHHh-----------------------cCCCEEEeCCCCCHHH
Confidence 4455555533 322589999976543 22 5677777652 2589999999999999
Q ss_pred HHHHHHcCCCEEEe
Q 001674 996 YEECLRSGMDGYVS 1009 (1033)
Q Consensus 996 ~~~~l~aG~ddyl~ 1009 (1033)
..+++++|+++.+.
T Consensus 204 i~~l~~~G~~~viv 217 (233)
T cd04723 204 LELLKKLGASGALV 217 (233)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999874
No 283
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=43.63 E-value=2e+02 Score=31.77 Aligned_cols=99 Identities=15% Similarity=0.039 Sum_probs=66.9
Q ss_pred HHHHHhhCCCE--EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCC
Q 001674 902 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 979 (1033)
Q Consensus 902 l~~~L~~~g~~--v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~ 979 (1033)
++..|+.-... +.+......+.+.+. ...||.|++|++=-.+|--++...||..+.
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~--------------------- 67 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLG-LAGFDWLVLDGEHAPNDVSTFIPQLMALKG--------------------- 67 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHH-hcCCCEEEEccccCCCCHHHHHHHHHHHhh---------------------
Confidence 55666543221 223334456666664 356999999999999998888888887431
Q ss_pred CCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHH
Q 001674 980 FHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVS 1022 (1033)
Q Consensus 980 ~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~-~~~~L~~~v~ 1022 (1033)
..++.++=....+.....+++++|+++.+.-=+ +.++..+.++
T Consensus 68 ~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 68 SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 123444445666889999999999999987555 5566666654
No 284
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=43.50 E-value=2.9e+02 Score=28.83 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=55.0
Q ss_pred HHHHHHHHhhCCCEEE----EEeChHHHHHHhCCCCCccEEEEcCC-----CCCCCHHHHHHHHHhhccccccccccccc
Q 001674 899 LKVAAAGLKRYGAAVV----CVERGKKATELLMPPHQFDACFMDIQ-----MPEMDGFEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 899 ~~vl~~~L~~~g~~v~----~a~~g~eAl~~l~~~~~~DlIlmDi~-----MP~mdG~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
...+....++.|..+. .+.+..++...+ ....|.+..... .....+.+.++++++.
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~--~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~------------- 156 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL--KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL------------- 156 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH--HCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-------------
Confidence 3445566677787654 445777777744 246788777421 1124566777777642
Q ss_pred chhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 970 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.++||++ ++....+...+++++|+|.++.
T Consensus 157 ----------~~~~i~~-~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 ----------LGVKVAV-AGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred ----------cCCCEEE-ECCcCHHHHHHHHhcCCCEEEE
Confidence 2467765 5555689999999999998764
No 285
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=43.27 E-value=3.1e+02 Score=31.53 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=62.1
Q ss_pred eEEEEe----CCHHHHHHHHHHHhhCC-CEEEE--EeChHHHHHHhCCCCCccEEEEcC-------CCC----CCC--HH
Q 001674 888 KILIVD----DNNVNLKVAAAGLKRYG-AAVVC--VERGKKATELLMPPHQFDACFMDI-------QMP----EMD--GF 947 (1033)
Q Consensus 888 ~ILIVD----Dn~~n~~vl~~~L~~~g-~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi-------~MP----~md--G~ 947 (1033)
.++++| +.....+.++.+=++++ ..|.. +.+.++|..+.. ..+|++..-+ +-+ ... ++
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 467774 33444445555544554 44443 568888877763 4688875331 111 112 45
Q ss_pred HHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 948 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 948 ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.+++.+++. .++|||+--+-....+..+|+.+|+|.+..
T Consensus 191 ~ai~~~~~~-----------------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 191 AALRWCAKA-----------------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 566666641 258999999999999999999999998754
No 286
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.47 E-value=1.1e+02 Score=30.24 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001674 89 LITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIST 150 (1033)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~ 150 (1033)
.++++++|+++++++.++......+. ..+...-++.-.-|.++=+...+|+-.-|-|+..
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~q--~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~ 61 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQKQ--AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDN 61 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999888887765332 3444555555555555555555565555555544
No 287
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.08 E-value=2.5e+02 Score=30.64 Aligned_cols=90 Identities=14% Similarity=0.016 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhCCCEEEEEeCh---HHHHHHhCCCCCccEEEEcCCCCCCC------HHHHHHHHHhhcccccccccccc
Q 001674 898 NLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMD------GFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 898 n~~vl~~~L~~~g~~v~~a~~g---~eAl~~l~~~~~~DlIlmDi~MP~md------G~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
....+...++++|..+..+-+. .+.++.+. ....++++| -.+|+-. -.+.++++|++-
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~----------- 183 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV----------- 183 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc-----------
Confidence 3455677888999877766554 34445442 244677888 5566632 234566666531
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCC
Q 001674 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 1011 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP 1011 (1033)
...||++=.+-...++..++.++|+|+++.--
T Consensus 184 -----------~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 184 -----------GNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred -----------CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 12465543333378899999999999998764
No 288
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=40.84 E-value=24 Score=47.53 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCChhhHh--------hccCcccccC---CCCCCCCCc-ccchHHHHHHHHHHc
Q 001674 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRM 688 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~d---~s~s~~~~G-tGLGLsI~k~Lv~~m 688 (1033)
.|+|.|+|.|||-+..+ -||.-....+ ....+..|| .|.|.+.|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 48999999999986432 2444333221 111222344 599999888776654
No 289
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.72 E-value=80 Score=34.94 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=33.2
Q ss_pred CCcEEEEccCCc------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001674 981 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPIIalTa~~~------~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
.+|++.|+-... +....+|.++|+|+.+.-....++..+.+..
T Consensus 87 ~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~ 135 (256)
T TIGR00262 87 NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEA 135 (256)
T ss_pred CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHH
Confidence 578888887655 6778899999999999887777766555543
No 290
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=40.19 E-value=2.6e+02 Score=30.92 Aligned_cols=97 Identities=21% Similarity=0.150 Sum_probs=68.4
Q ss_pred HHHHHHhhCCCEEEEEe--ChHHHHHHhCCCCCccEEEEcCCCCCCCHH-----HHHHHHHhhcccccccccccccchhh
Q 001674 901 VAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIEA 973 (1033)
Q Consensus 901 vl~~~L~~~g~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~-----ea~~~IR~~e~~~~~~~~~g~~~~~~ 973 (1033)
-+.+.|-+.||.|.... |..-|-++. .- =-.++|=+--|.-+|. ..++.|++
T Consensus 128 ~Aae~Lv~eGF~VlPY~~~D~v~a~rLe-d~--Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e------------------ 186 (267)
T CHL00162 128 KAAEFLVKKGFTVLPYINADPMLAKHLE-DI--GCATVMPLGSPIGSGQGLQNLLNLQIIIE------------------ 186 (267)
T ss_pred HHHHHHHHCCCEEeecCCCCHHHHHHHH-Hc--CCeEEeeccCcccCCCCCCCHHHHHHHHH------------------
Confidence 34566777899988554 444444433 21 2457888888876653 45666665
Q ss_pred hcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHh
Q 001674 974 YENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVSR 1023 (1033)
Q Consensus 974 ~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~v~r 1023 (1033)
...+|||.=.+-...++..++++.|+|+.+ .|--++.++.++++.
T Consensus 187 -----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~ 236 (267)
T CHL00162 187 -----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKL 236 (267)
T ss_pred -----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHH
Confidence 236899999999999999999999999985 566777777766653
No 291
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.05 E-value=2e+02 Score=32.29 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=49.0
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+++.+.+. ..+|+|.+| +|+..+=-++.+.++. ..+|..++..
T Consensus 196 IeVEv~slee~~ea~~--~gaDiImLD-n~s~e~l~~av~~~~~--------------------------~~~leaSGgI 246 (281)
T PRK06543 196 VEVEVDRLDQIEPVLA--AGVDTIMLD-NFSLDDLREGVELVDG--------------------------RAIVEASGNV 246 (281)
T ss_pred EEEEeCCHHHHHHHHh--cCCCEEEEC-CCCHHHHHHHHHHhCC--------------------------CeEEEEECCC
Confidence 3457899999999873 468999999 4444333344444432 1268889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001674 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-..
T Consensus 247 ~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 247 NLNTVGAIASTGVDVIS 263 (281)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998543
No 292
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=39.70 E-value=1.1e+02 Score=34.19 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=59.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhh----CCCE---EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKR----YGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 960 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~----~g~~---v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~ 960 (1033)
-|||=|.+-...-.+...+++ .++. -+.+++-+|+.+++. ..+|+|++|- |+.-.=-++.+.++.
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~--agaDiImLDN-m~~e~~~~av~~l~~----- 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE--AGADIIMLDN-MSPEELKEAVKLLGL----- 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH--cCCCEEEecC-CCHHHHHHHHHHhcc-----
Confidence 355555554444435555553 3553 346789999999884 5699999994 433222233333210
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEE
Q 001674 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 1007 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddy 1007 (1033)
..-.++-.|+....+...+..+.|+|-+
T Consensus 232 -------------------~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 232 -------------------AGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred -------------------CCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 1135788999999999999999999854
No 293
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.59 E-value=1.8e+02 Score=36.58 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=61.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHH-HHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK-ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~e-Al~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+..+.++|.|+...+.+ ++.|+.+...+-.+. .++.. .-++.|+++.-..=++.+ ..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~a-gi~~A~~vvv~~~d~~~n-~~i~~~ar~~-------- 488 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDPQTS-LQLVELVKEH-------- 488 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhc-CCCcCCEEEEEeCCHHHH-HHHHHHHHHh--------
Confidence 44689999998765444 557888877664443 34433 334688888776544443 5566777763
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE
Q 001674 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
+++++|++-+.+ .+...+..++|+|..+
T Consensus 489 --------------~p~~~iiaRa~d--~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 --------------FPHLQIIARARD--VDHYIRLRQAGVEKPE 516 (621)
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHCCCCEEe
Confidence 346788886644 5667778899999764
No 294
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=39.28 E-value=2.2e+02 Score=28.62 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=69.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcC-cE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~G-i~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+++++|+++..+......+...+ +. +..+.+..+++..... ..++.+++|......+ .......++....
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---~~~~~~~l~~~~~- 76 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMN---GLDVIPQLHQRWP- 76 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHCC-
Confidence 4679999999999888888888764 55 3467777777765433 3467777775543221 2233444444221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
...++++.............. .+...++.||.....+...+...+.
T Consensus 77 -~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 77 -AMNILVLTARQEEHMASRTLA-AGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred -CCcEEEEeCCCCHHHHHHHHH-hCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 223334433222111111111 2456789999999998888877653
No 295
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.05 E-value=1.1e+02 Score=31.26 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=73.2
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHHH
Q 001674 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519 (1033)
Q Consensus 440 Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v 519 (1033)
+.+.+.||+=.|..+|-.-+++|.+..-+ .+-++.|..++..+. +.|.|+|+--|.---.-..+|-.+.=+-+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~ad---dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGAD---DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCcc---HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 45679999999999999999999876554 455666777766654 46789998766544333456655543333
Q ss_pred HHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCe-EEEEE
Q 001674 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTV 577 (1033)
Q Consensus 520 ~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-I~v~v 577 (1033)
.+.|. .+| -++.-+. |..+ ..+.+. ..+.||+-=|--.-+.|+ +.+++
T Consensus 91 ~~~~a---~ek-pe~~W~g----~r~~-~~Kn~v-kllLNl~lia~~aiPrGG~~~vtl 139 (214)
T COG5385 91 QDFFA---NEK-PELTWNG----PRAI-LPKNRV-KLLLNLFLIAYGAIPRGGSLVVTL 139 (214)
T ss_pred HHHHh---ccC-CcccccC----Chhh-cCcchH-HHHHHHHHHHcccCCCCCeeEEEe
Confidence 33332 222 3333322 2111 233343 457788877766667664 43443
No 296
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.71 E-value=87 Score=34.27 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCcEEEEccCCc------HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001674 981 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREV 1021 (1033)
Q Consensus 981 ~iPIIalTa~~~------~~~~~~~l~aG~ddyl~KP~~~~~L~~~v 1021 (1033)
.+|+++||-... +....+|.++|+|+.+.-....+++...+
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~ 122 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFR 122 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 579888887443 66788899999999998444445544433
No 297
>PRK10651 transcriptional regulator NarL; Provisional
Probab=38.68 E-value=2.3e+02 Score=28.90 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=71.0
Q ss_pred CcEEEEECCchhhHHHHHHHHHHc-CcE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~-Gi~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+++++|+++.........+... ++. +..+.+..+++..+.. ..++.+++|....... .......++....
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~---~~~~~~~l~~~~~- 79 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMN---GLETLDKLREKSL- 79 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCc---HHHHHHHHHHhCC-
Confidence 357899999998888888888765 454 4467888888877644 3467788776543322 2234444443221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
...++++............. ..+...++.||.....+...+..++.
T Consensus 80 -~~~vi~l~~~~~~~~~~~~~-~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 80 -SGRIVVFSVSNHEEDVVTAL-KRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred -CCcEEEEeCCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 22333333222211111111 12456789999999999998888774
No 298
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=38.65 E-value=2.8e+02 Score=30.93 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=65.4
Q ss_pred HHHHHhhCCCE--EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCC
Q 001674 902 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 979 (1033)
Q Consensus 902 l~~~L~~~g~~--v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~ 979 (1033)
++..|+.-... ..+......+.+.+. ...||.|++|++=-..|--++...||....
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a-~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~--------------------- 66 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAA-TSGYDWLLIDGEHAPNTIQDLYHQLQAIAP--------------------- 66 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHH-HcCCCEEEEccccCCCCHHHHHHHHHHHHh---------------------
Confidence 45555542221 222333445666664 346999999999999988888888887531
Q ss_pred CCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHH
Q 001674 980 FHVPILAMTADVIQATYEECLRSGMDGYVSKPFE-AEQLYREVS 1022 (1033)
Q Consensus 980 ~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~-~~~L~~~v~ 1022 (1033)
..++.++=....+.....+++++|+++.+.-=++ .++..+.++
T Consensus 67 ~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 67 YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred cCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 1233444556678899999999999999987664 455555554
No 299
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=38.64 E-value=3.3e+02 Score=25.30 Aligned_cols=20 Identities=10% Similarity=0.376 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhHHh
Q 001674 428 KKAEAADVAKSQFLATVSHE 447 (1033)
Q Consensus 428 ~~ae~a~~aKs~Fla~vSHE 447 (1033)
++..+..+.|..|+.+|-..
T Consensus 61 ~r~rES~~Er~K~~~s~~~~ 80 (121)
T PF10669_consen 61 KRNRESKRERQKFIWSMNKQ 80 (121)
T ss_pred HHhhhhHHHHHhHHhhhhHH
Confidence 34445566677888877544
No 300
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=38.50 E-value=1e+02 Score=32.51 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=41.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCC--EEE-EEeChHHHHHHhCCCCCccEEEEcCCCC
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPPHQFDACFMDIQMP 942 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP 942 (1033)
.++++||-|.....+++.-++..|. .+. ...|...++..+.....||+||+|---.
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 5799999999999999998888772 333 3445557777765444599999997443
No 301
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=38.36 E-value=1.8e+02 Score=27.36 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHh
Q 001674 990 DVIQATYEECLRSGMDGYVSKPF--EAEQLYREVSR 1023 (1033)
Q Consensus 990 ~~~~~~~~~~l~aG~ddyl~KP~--~~~~L~~~v~r 1023 (1033)
....+...+|+++|.+=++.||+ +.+++.+.++.
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~ 108 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEA 108 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHH
Confidence 44456777899999999999999 77777666543
No 302
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.33 E-value=1.2e+02 Score=34.10 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=49.3
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+||.+.+. ...|+|.+| +|+.-+=-++.+.+|+. .++ ..+..++..
T Consensus 202 IeVEv~tl~ea~eal~--~gaDiI~LD-nm~~e~vk~av~~~~~~----------------------~~~-v~ieaSGGI 255 (289)
T PRK07896 202 CEVEVDSLEQLDEVLA--EGAELVLLD-NFPVWQTQEAVQRRDAR----------------------APT-VLLESSGGL 255 (289)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEeC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 4556789999999884 468999999 55422222333333321 122 367889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001674 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|.+.
T Consensus 256 ~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 256 TLDTAAAYAETGVDYLA 272 (289)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998664
No 303
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=36.67 E-value=1.9e+02 Score=30.19 Aligned_cols=78 Identities=15% Similarity=0.053 Sum_probs=54.6
Q ss_pred HhhCCCE-EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcE
Q 001674 906 LKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 984 (1033)
Q Consensus 906 L~~~g~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPI 984 (1033)
.+.+|.. +.-+.+..|+.+... ..+|+|-++- ++.. |.+..+.+++. .+++|+
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~--~Gad~i~~~p-~~~~-g~~~~~~l~~~----------------------~~~~p~ 146 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALE--LGADIVKLFP-AEAV-GPAYIKALKGP----------------------FPQVRF 146 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHH--CCCCEEEEcC-Cccc-CHHHHHHHHhh----------------------CCCCeE
Confidence 3344443 334568888888763 5689998864 4444 99999998752 235788
Q ss_pred EEEccCCcHHHHHHHHHcCCCEEEeC
Q 001674 985 LAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 985 IalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
++.-+ ...+...+++++|++....-
T Consensus 147 ~a~GG-I~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 147 MPTGG-VSLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred EEeCC-CCHHHHHHHHHCCCEEEEEc
Confidence 87655 48899999999999886543
No 304
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.26 E-value=2.4e+02 Score=27.70 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001674 92 WLLFWTLVSLWIFWYMSSQATEKRR-----EALGSMCDERARMLQDQFNVSMNHVQAMS 145 (1033)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 145 (1033)
-+++|+++.++|..........+.+ +.....-|+--+-|-+-|+.+-..+-.|+
T Consensus 14 gLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~ 72 (138)
T COG3105 14 GLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLA 72 (138)
T ss_pred HHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999988877666554222 44445555555566666666555555554
No 305
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=36.14 E-value=1.1e+02 Score=34.49 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCE------EEeCCCCHHHHHHHHHhhCCCC
Q 001674 981 HVPILAMTADVIQATYEECLRSGMDG------YVSKPFEAEQLYREVSRFFPPI 1028 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~dd------yl~KP~~~~~L~~~v~r~~~~~ 1028 (1033)
.+|||+.-+-.+.++..+++.+|+|. ++.+|.-..++.+.+.+++..+
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 48999999999999999999999996 6788977788888888876543
No 306
>PRK10742 putative methyltransferase; Provisional
Probab=35.43 E-value=4.1e+02 Score=29.32 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhC------CC----EEE-EEeChHHHHHHhCCCCCccEEEEcCCCCCCC
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRY------GA----AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD 945 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~------g~----~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~md 945 (1033)
|.+|..||-++....+++.-|++. +. .+. ...|..+.+... ...||+|++|-.-|.-.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCCcEEEECCCCCCCc
Confidence 567999999999999999999984 21 122 234556666654 23699999999998754
No 307
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.29 E-value=3.7e+02 Score=28.79 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=52.6
Q ss_pred HHHHhhCCCEEEEE-eChHHHHHHhCCCCCccEEEEcCCCCC-------CCHHHHHHHHHhhcccccccccccccchhhh
Q 001674 903 AAGLKRYGAAVVCV-ERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAY 974 (1033)
Q Consensus 903 ~~~L~~~g~~v~~a-~~g~eAl~~l~~~~~~DlIlmDi~MP~-------mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~ 974 (1033)
...+++.+..+... .+..++.... + ...|.|..+-.-++ ...++.++++|+.
T Consensus 95 ~~~~~~~~i~~i~~v~~~~~~~~~~-~-~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~------------------ 154 (236)
T cd04730 95 VERLKAAGIKVIPTVTSVEEARKAE-A-AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA------------------ 154 (236)
T ss_pred HHHHHHcCCEEEEeCCCHHHHHHHH-H-cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH------------------
Confidence 34455556554433 3445544433 2 45788877542111 2456777887752
Q ss_pred cccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001674 975 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 975 ~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
..+||++.-+-...++..+++++|+|+.+.-
T Consensus 155 -----~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 -----VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred -----hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 1479998777777789999999999988654
No 308
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=35.28 E-value=3.9e+02 Score=29.44 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=60.5
Q ss_pred eChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHH
Q 001674 917 ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 996 (1033)
Q Consensus 917 ~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~ 996 (1033)
.....+.+.+. ...||.|++|++=-.+|--++...||..+. ..++.++=....+....
T Consensus 20 ~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~---------------------~g~~~~VRvp~~~~~~i 77 (249)
T TIGR03239 20 LGNPITTEVLG-LAGFDWLLLDGEHAPNDVLTFIPQLMALKG---------------------SASAPVVRPPWNEPVII 77 (249)
T ss_pred CCCcHHHHHHH-hcCCCEEEEecccCCCCHHHHHHHHHHHhh---------------------cCCCcEEECCCCCHHHH
Confidence 44456666664 356999999999999998888888887431 12333444466788999
Q ss_pred HHHHHcCCCEEEeCCC-CHHHHHHHHH
Q 001674 997 EECLRSGMDGYVSKPF-EAEQLYREVS 1022 (1033)
Q Consensus 997 ~~~l~aG~ddyl~KP~-~~~~L~~~v~ 1022 (1033)
.+++++|+++.+.-=+ +.++..+.++
T Consensus 78 ~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 78 KRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 9999999999987555 5566666654
No 309
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=35.22 E-value=2.5e+02 Score=27.02 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhCCCEEEEEe--ChHHHHHHhCCCCCccEEEEcCCCCCC-CHHHHHHHHHhhcccccccccccccchhhh
Q 001674 898 NLKVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEM-DGFEATKIIREMEHNFNNRIRRGEVSIEAY 974 (1033)
Q Consensus 898 n~~vl~~~L~~~g~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~ 974 (1033)
....+..+|++.|+.+.... .-++.++.+.....||+|.+.+.-+.. ...++++.||+.
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~------------------ 65 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV------------------ 65 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHH------------------
Confidence 45678889999998877654 334445555332679999998854444 345677778763
Q ss_pred cccCCCCCcEEEEccCCcHHHHHH-HHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 975 ENVSNFHVPILAMTADVIQATYEE-CLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 975 ~~~~~~~iPIIalTa~~~~~~~~~-~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.++++|++--..... ..+. ....++| |+..=--...+.+.++.+.
T Consensus 66 ----~p~~~iv~GG~~~t~-~p~~~~~~~~~D-~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 66 ----LPNVIVVVGGPHATF-FPEEILEEPGVD-FVVIGEGEETFLKLLEELE 111 (127)
T ss_pred ----CCCCEEEECCcchhh-CHHHHhcCCCCC-EEEECCcHHHHHHHHHHHH
Confidence 235666654433332 2233 2345565 5554333345555555543
No 310
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.83 E-value=2.7e+02 Score=31.20 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=48.3
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+||.+.+. ..+|+|.+|= | + ++.++++-++.+. ..++ .+|..++..
T Consensus 185 I~VEv~tleea~~A~~--~GaDiI~LDn-~---~-~e~l~~~v~~~~~------------------~~~~-~~ieAsGgI 238 (273)
T PRK05848 185 IEIECESLEEAKNAMN--AGADIVMCDN-M---S-VEEIKEVVAYRNA------------------NYPH-VLLEASGNI 238 (273)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEECC-C---C-HHHHHHHHHHhhc------------------cCCC-eEEEEECCC
Confidence 3446789999999883 5689999884 3 3 3444444332110 1123 357788889
Q ss_pred cHHHHHHHHHcCCCEEEe
Q 001674 992 IQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl~ 1009 (1033)
+.+...++.+.|+|.+.+
T Consensus 239 t~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 239 TLENINAYAKSGVDAISS 256 (273)
T ss_pred CHHHHHHHHHcCCCEEEe
Confidence 999999999999987653
No 311
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.79 E-value=1.6e+02 Score=25.01 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=31.4
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 001674 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487 (1033)
Q Consensus 439 ~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~ 487 (1033)
+.+...-||+.+=|+.|.|++++ ...++..+|++.+....+....
T Consensus 14 ~~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 14 DSLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999985 2224456777777666655533
No 312
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=34.74 E-value=2.9e+02 Score=28.28 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=48.5
Q ss_pred CCCEEEEE-eChHHHHHHhCCCCCccEEEEcCCCCC--------CCHHHHHHHHHhhcccccccccccccchhhhcccCC
Q 001674 909 YGAAVVCV-ERGKKATELLMPPHQFDACFMDIQMPE--------MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 979 (1033)
Q Consensus 909 ~g~~v~~a-~~g~eAl~~l~~~~~~DlIlmDi~MP~--------mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~ 979 (1033)
.+..+-.. .+..++.+.. ...+|.|+.+.--|. -.|.+..+++++.
T Consensus 94 ~~~~~g~~~~t~~~~~~~~--~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 148 (196)
T cd00564 94 PDLIIGVSTHSLEEALRAE--ELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL----------------------- 148 (196)
T ss_pred CCCEEEeeCCCHHHHHHHh--hcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----------------------
Confidence 34444332 4555665554 245899987643332 3456777777652
Q ss_pred CCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 980 FHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 980 ~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.++||++.-+- ..+...++.++|+|++..
T Consensus 149 ~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 149 VEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 25899988665 568899999999998754
No 313
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=34.20 E-value=98 Score=32.03 Aligned_cols=72 Identities=25% Similarity=0.224 Sum_probs=47.5
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+|+.+.+. ..+|.|.+|=.-| -+=-++.+.++.. .++ ..|.+++..
T Consensus 83 I~VEv~~~ee~~ea~~--~g~d~I~lD~~~~-~~~~~~v~~l~~~----------------------~~~-v~ie~SGGI 136 (169)
T PF01729_consen 83 IEVEVENLEEAEEALE--AGADIIMLDNMSP-EDLKEAVEELREL----------------------NPR-VKIEASGGI 136 (169)
T ss_dssp EEEEESSHHHHHHHHH--TT-SEEEEES-CH-HHHHHHHHHHHHH----------------------TTT-SEEEEESSS
T ss_pred EEEEcCCHHHHHHHHH--hCCCEEEecCcCH-HHHHHHHHHHhhc----------------------CCc-EEEEEECCC
Confidence 3446788889888874 4599999996433 2222333333332 122 688899999
Q ss_pred cHHHHHHHHHcCCCEEEe
Q 001674 992 IQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl~ 1009 (1033)
..+...+..+.|+|.+.+
T Consensus 137 ~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVISV 154 (169)
T ss_dssp STTTHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHhcCCCEEEc
Confidence 999999999999987753
No 314
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.10 E-value=3.5e+02 Score=28.94 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHHHHhCCCCCcc-EEEEcCCCCCC---CHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHH
Q 001674 921 KATELLMPPHQFD-ACFMDIQMPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 996 (1033)
Q Consensus 921 eAl~~l~~~~~~D-lIlmDi~MP~m---dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~ 996 (1033)
+.++.+. ....| ++++|+..-++ --+++++++++. ..+||++--+-.+.++.
T Consensus 150 ~~~~~~~-~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvi~~GGi~~~~di 205 (234)
T cd04732 150 ELAKRFE-ELGVKAIIYTDISRDGTLSGPNFELYKELAAA-----------------------TGIPVIASGGVSSLDDI 205 (234)
T ss_pred HHHHHHH-HcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----------------------cCCCEEEecCCCCHHHH
Confidence 3444443 23344 55777643222 126777888752 25899999999999999
Q ss_pred HHHHHcCCCEEEe
Q 001674 997 EECLRSGMDGYVS 1009 (1033)
Q Consensus 997 ~~~l~aG~ddyl~ 1009 (1033)
.++++.|+|+.+.
T Consensus 206 ~~~~~~Ga~gv~v 218 (234)
T cd04732 206 KALKELGVAGVIV 218 (234)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999764
No 315
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.04 E-value=3.5e+02 Score=32.36 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=61.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHH----hhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCH--HHHHHHHHhhccc
Q 001674 886 GRKILIVDDNNVNLKVAAAGL----KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHN 959 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L----~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~ea~~~IR~~e~~ 959 (1033)
|++|++++-+. .|......| ...|..+..+.+..++.+.+. ...+|+||+|. |+... .+.+++++++...
T Consensus 252 G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 252 GKSVSLYTTDN-YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGSELILIDT--AGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred CCeEEEecccc-hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCCCEEEEeC--CCCCccCHHHHHHHHHHHHh
Confidence 56888888776 333333334 445666666666666666664 36799999996 33211 2334444432110
Q ss_pred ccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHH----cCCCEEEeCCCC
Q 001674 960 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPFE 1013 (1033)
Q Consensus 960 ~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~----aG~ddyl~KP~~ 1013 (1033)
. +...+.-.+++++|....++..+..+ .|.++.|.-=+|
T Consensus 328 ~---------------~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLD 370 (432)
T PRK12724 328 F---------------GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370 (432)
T ss_pred h---------------cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEccc
Confidence 0 00112346788888887766666544 677777654343
No 316
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=33.87 E-value=1e+02 Score=32.31 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEE
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
|||||.....-.-+..+|++.|+.+.+..+....++.+. ...||.|++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE-ALLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH-hcCCCEEEE
Confidence 899999999999999999999999988775432223232 235785554
No 317
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=33.58 E-value=2.7e+02 Score=28.99 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=47.3
Q ss_pred EEeChHHHHHHhCCCCCccEEEEcCCCC--------CCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEE
Q 001674 915 CVERGKKATELLMPPHQFDACFMDIQMP--------EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 986 (1033)
Q Consensus 915 ~a~~g~eAl~~l~~~~~~DlIlmDi~MP--------~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIa 986 (1033)
.+.+..++.+.. ....|+|+.+--.| ...|.+..+.+.+. .+.+||++
T Consensus 102 s~h~~~e~~~a~--~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~----------------------~~~~pv~a 157 (196)
T TIGR00693 102 STHNLEELAEAE--AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT----------------------SIDIPIVA 157 (196)
T ss_pred eCCCHHHHHHHh--HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------cCCCCEEE
Confidence 455666665543 34689998765443 12478888888652 12478888
Q ss_pred EccCCcHHHHHHHHHcCCCEEEe
Q 001674 987 MTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 987 lTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+-+- ..+...+++++|++++..
T Consensus 158 ~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 158 IGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred ECCc-CHHHHHHHHHcCCCEEEE
Confidence 7554 678888999999998753
No 318
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=33.48 E-value=1.4e+02 Score=32.06 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=46.0
Q ss_pred HHHHHHhCCCCCcc-EEEEcCCCCCC-CH--HHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHH
Q 001674 920 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 995 (1033)
Q Consensus 920 ~eAl~~l~~~~~~D-lIlmDi~MP~m-dG--~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~ 995 (1033)
.+..+.+. ...++ ++++|+..-++ .| ++.++++++. ..+|||+-.+-.+.++
T Consensus 149 ~e~~~~~~-~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----------------------~~ipvia~GGi~~~~d 204 (233)
T PRK00748 149 EDLAKRFE-DAGVKAIIYTDISRDGTLSGPNVEATRELAAA-----------------------VPIPVIASGGVSSLDD 204 (233)
T ss_pred HHHHHHHH-hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 34444442 23455 77777754322 33 6778888752 2489999999999999
Q ss_pred HHHHHHcC-CCEEEe
Q 001674 996 YEECLRSG-MDGYVS 1009 (1033)
Q Consensus 996 ~~~~l~aG-~ddyl~ 1009 (1033)
..++++.| +++.+.
T Consensus 205 i~~~~~~g~~~gv~v 219 (233)
T PRK00748 205 IKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHcCCccEEEE
Confidence 99999998 999875
No 319
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.39 E-value=1.3e+02 Score=33.90 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=45.9
Q ss_pred EEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCc
Q 001674 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 992 (1033)
Q Consensus 913 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~ 992 (1033)
-..++|.+||.+.+. ..+|+|.+| .|...+=-++.+.+|+. .+++| +..++...
T Consensus 200 ~VEv~tleea~eA~~--~GaD~I~LD-n~~~e~l~~av~~~~~~----------------------~~~i~-leAsGGIt 253 (288)
T PRK07428 200 EVETETLEQVQEALE--YGADIIMLD-NMPVDLMQQAVQLIRQQ----------------------NPRVK-IEASGNIT 253 (288)
T ss_pred EEECCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHHHHhc----------------------CCCeE-EEEECCCC
Confidence 345688999999883 568999999 33322212233333321 23455 55677788
Q ss_pred HHHHHHHHHcCCCEEE
Q 001674 993 QATYEECLRSGMDGYV 1008 (1033)
Q Consensus 993 ~~~~~~~l~aG~ddyl 1008 (1033)
.+...+..+.|+|...
T Consensus 254 ~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 254 LETIRAVAETGVDYIS 269 (288)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 9999999999998764
No 320
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=32.94 E-value=1.3e+02 Score=34.69 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=44.4
Q ss_pred HHHHHHhCCCCCccEEEEcCCCCCCCH-HHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHH
Q 001674 920 KKATELLMPPHQFDACFMDIQMPEMDG-FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 998 (1033)
Q Consensus 920 ~eAl~~l~~~~~~DlIlmDi~MP~mdG-~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~ 998 (1033)
+++.+++...-..|+|.+|+.-|..+. .|++++||+. .+.+|||+=.- .+.++...
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~----------------------~p~~~vi~g~V-~t~e~a~~ 156 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH----------------------LPETFVIAGNV-GTPEAVRE 156 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh----------------------CCCCeEEEEec-CCHHHHHH
Confidence 555555532113599999999875443 4567778762 23577777322 26788899
Q ss_pred HHHcCCCEEE
Q 001674 999 CLRSGMDGYV 1008 (1033)
Q Consensus 999 ~l~aG~ddyl 1008 (1033)
+.++|+|...
T Consensus 157 l~~aGad~i~ 166 (326)
T PRK05458 157 LENAGADATK 166 (326)
T ss_pred HHHcCcCEEE
Confidence 9999999965
No 321
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=32.76 E-value=1.6e+02 Score=32.16 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=25.9
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 981 HVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.+|||+.=.-.+.++..+++++|+|+...
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 48999998888999999999999998864
No 322
>PRK10403 transcriptional regulator NarP; Provisional
Probab=32.71 E-value=3e+02 Score=27.96 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=69.0
Q ss_pred cEEEEECCchhhHHHHHHHHHH-cCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~-~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++.........+.. .+..+. .+.+..+++..+.. ..++.+++|......+ ....+..++....
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---~~~~~~~l~~~~~-- 79 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMS---GLDTLNALRRDGV-- 79 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCc---HHHHHHHHHHhCC--
Confidence 5789999999888777777865 577764 57788888776543 3577888876543322 2234444443221
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l 862 (1033)
...++++............ -..+...++.||.....+...+...+
T Consensus 80 ~~~ii~l~~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~ 124 (215)
T PRK10403 80 TAQIIILTVSDASSDVFAL-IDAGADGYLLKDSDPEVLLEAIRAGA 124 (215)
T ss_pred CCeEEEEeCCCChHHHHHH-HHcCCCeEEecCCCHHHHHHHHHHHh
Confidence 1223333322111111111 11256678999999988888887765
No 323
>PRK11677 hypothetical protein; Provisional
Probab=32.58 E-value=2.7e+02 Score=27.79 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001674 89 LITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIST 150 (1033)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~ 150 (1033)
.++.+++|+++++++..+..... +.+..+...-++-...|.++=+...+|+.--|-|+..
T Consensus 6 a~i~livG~iiG~~~~R~~~~~~--~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~ 65 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRKL--RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDT 65 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447788888888777765554 3334555666666666666667777777777777655
No 324
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=31.92 E-value=2.5e+02 Score=30.64 Aligned_cols=84 Identities=21% Similarity=0.106 Sum_probs=53.8
Q ss_pred HHHHHHHhhCCCEEEEEe--ChHHHHHHhCCCCCccEEEEcCCCCCCCHH-----HHHHHHHhhcccccccccccccchh
Q 001674 900 KVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 900 ~vl~~~L~~~g~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~-----ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
-.+.+.|-+.||.|.... |.--|-++. + - =-.++|=+--|.-+|. ..++.|++.
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~D~v~akrL~-d-~-GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~---------------- 173 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYCTDDPVLAKRLE-D-A-GCAAVMPLGSPIGSGRGIQNPYNLRIIIER---------------- 173 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HHHHHHHH-H-T-T-SEBEEBSSSTTT---SSTHHHHHHHHHH----------------
T ss_pred HHHHHHHHHCCCEEeecCCCCHHHHHHHH-H-C-CCCEEEecccccccCcCCCCHHHHHHHHHh----------------
Confidence 345567778999988554 444443333 1 1 1347888888877763 466777652
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
..+|||+=.+-...++..++++.|+|+.|.
T Consensus 174 -------~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 174 -------ADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp -------GSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred -------cCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 158999999999999999999999999985
No 325
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=31.76 E-value=4.4e+02 Score=30.21 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHhhCCCEE--EEEeChHHHHHHhCCCCCccEEEEcCCCCCCCH-----HHHHHHHHhhcccccccccc
Q 001674 894 DNNVNLKVAAAGLKRYGAAV--VCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 894 Dn~~n~~vl~~~L~~~g~~v--~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-----~ea~~~IR~~e~~~~~~~~~ 966 (1033)
|.....+.. +.|-+.|+.| .|++|...|-.+.. -.+ +.+|=+--|.-.| -+.++.+++.
T Consensus 182 d~~~~v~aa-~~L~~~Gf~v~~yc~~d~~~a~~l~~--~g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~---------- 247 (326)
T PRK11840 182 DMVETLKAT-EILVKEGFQVMVYCSDDPIAAKRLED--AGA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG---------- 247 (326)
T ss_pred CHHHHHHHH-HHHHHCCCEEEEEeCCCHHHHHHHHh--cCC-EEEeeccccccCCCCCCCHHHHHHHHHc----------
Confidence 333333333 3444569987 57777777766542 233 5555433333332 4556666542
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHH
Q 001674 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVS 1022 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~v~ 1022 (1033)
..+|||.=.+-...++..++++.|+|+.+ .|-=++-.+.++.+
T Consensus 248 -------------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 248 -------------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred -------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence 35899998999999999999999999986 45556655555544
No 326
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=31.58 E-value=2.7e+02 Score=22.18 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001674 387 LAISTSIGILVIASLVGHIFQATVNRIA 414 (1033)
Q Consensus 387 ~~~~~~i~~lvi~~l~~~i~~~~~~r~~ 414 (1033)
..+..++.++.+...+|..++..+..+.
T Consensus 6 t~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 6 TTIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444445555565555543
No 327
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=31.51 E-value=1.2e+02 Score=33.59 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.2
Q ss_pred CCcEEEEccC------CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001674 981 HVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLYREV 1021 (1033)
Q Consensus 981 ~iPIIalTa~------~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v 1021 (1033)
.+|++.||=. ..+.-..+|.++|+|+.+.--...++....+
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~ 137 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLI 137 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHH
Confidence 5898889855 4466788999999999999877666655433
No 328
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.34 E-value=7.9e+02 Score=29.55 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001674 390 STSIGILVIASLVGHIFQATV-----NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPM 452 (1033)
Q Consensus 390 ~~~i~~lvi~~l~~~i~~~~~-----~r~~~~~~~~~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPL 452 (1033)
..++.++++++++.++++..+ .|..++.+...+..+.+++++++...-.+-++....|-+.=+
T Consensus 6 ~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii 73 (445)
T PRK13428 6 GQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVV 73 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433 333444444444444444544444433344555544444333
No 329
>PRK00811 spermidine synthase; Provisional
Probab=31.26 E-value=2e+02 Score=32.31 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=40.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCC------CEE-EEEeChHHHHHHhCCCCCccEEEEcCCCCC
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYG------AAV-VCVERGKKATELLMPPHQFDACFMDIQMPE 943 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g------~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~ 943 (1033)
.+|.+||=++...+.++..+...+ -.+ ....|+.+.+.. ....||+|++|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCCCCC
Confidence 479999999999999999886532 223 345677766654 2467999999986664
No 330
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=30.60 E-value=5.9e+02 Score=25.85 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH
Q 001674 388 AISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIR 449 (1033)
Q Consensus 388 ~~~~~i~~lvi~~l~~~i~~~~~~-----r~~~~~~~~~~~~~~~~~ae~a~~aKs~Fla~vSHELR 449 (1033)
.+..++.++++.+++.++++..+. |...+........+.++++++....-.+-++..-.|-.
T Consensus 11 ~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~ 77 (164)
T PRK14471 11 FFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERD 77 (164)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555544433 33344444444444444444443333334444444433
No 331
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=30.54 E-value=4.7e+02 Score=27.66 Aligned_cols=116 Identities=6% Similarity=0.019 Sum_probs=68.7
Q ss_pred EEEEECCchhhHHHHHHHHHHcCc---EEEEecCHHHHHHHHhcCCccceEEEeecc--ccccCccchHHHHHHHhhcCC
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQE--VWEKDTSVSTLFVNNLRKLGC 814 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi---~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~ 814 (1033)
.++++|+++..+...+..|...+. .+..+++..++++.+.. ..++.+++|.. +..+ +. ...+..+++..+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~--~g-~~~i~~i~~~~p 76 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDA--SN-SQRIKQIINQHP 76 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCC--Ch-HHHHHHHHHHCC
Confidence 478999999999988888987553 34567888888876643 34689999944 3222 22 235555554332
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 815 ~~~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
..+++++............... ....++.|+.....+...+..+..
T Consensus 77 --~~~iivlt~~~~~~~~~~~~~~-~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 77 --NTLFIVFMAIANIHFDEYLLVR-KNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred --CCeEEEEECCCchhHHHHHHHH-hhceeeeccCCHHHHHHHHHHHHc
Confidence 2455555432211110000000 000145789899999988888775
No 332
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=30.53 E-value=1.9e+02 Score=27.29 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=42.5
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcCCCCCCC-HHHHHHHHHh
Q 001674 893 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD-GFEATKIIRE 955 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~md-G~ea~~~IR~ 955 (1033)
|-++.....+..+|++.|+++.... ...+.++.+. ..+||+|.+.+.+.... .++.++++++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~-~~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK-EEDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH-HcCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 5566777889999999999998764 3344445443 46799999988775532 3444555554
No 333
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.07 E-value=7e+02 Score=26.57 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001674 386 LLAISTSIGILVIASLVGHIFQATV-----NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMN 453 (1033)
Q Consensus 386 ~~~~~~~i~~lvi~~l~~~i~~~~~-----~r~~~~~~~~~~~~~~~~~ae~a~~aKs~Fla~vSHELRTPLn 453 (1033)
|..+..++.++++++++.++++..+ .|...+.+......+.+++++.....-.+-++..-.|-+.=++
T Consensus 49 ~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~ 121 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIID 121 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554443 3334444444444444444444433333344444444443333
No 334
>PRK13558 bacterio-opsin activator; Provisional
Probab=29.86 E-value=1.6e+02 Score=37.05 Aligned_cols=116 Identities=12% Similarity=0.140 Sum_probs=69.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001674 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++.... ..|
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~---g~~~l~~l~~~~~-~~p 81 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFD---GLALLEAVRQTTA-VPP 81 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCc---HHHHHHHHHhcCC-CCC
Confidence 579999999998888888888899999999999999887653 4478888887654322 2345555554222 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchH--HHHHHHHHHh
Q 001674 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS--MLAASLQRAM 862 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s--~l~~~l~~~l 862 (1033)
. +++.............. .+...++.||.... .+...+...+
T Consensus 82 i-I~lt~~~~~~~~~~al~-~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 82 V-VVVPTAGDEAVARRAVD-ADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred E-EEEECCCCHHHHHHHHh-cCcceEEeccchhHHHHHHHHHHHhh
Confidence 3 33332221111111111 24556778886533 4444444444
No 335
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=29.55 E-value=49 Score=40.93 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhhHhhccCcccc
Q 001674 638 IVSVEDTGQGIPLEAQSRIFTPFMQ 662 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q 662 (1033)
.|+|+|+|.||++...+-+-.+++.
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhh
Confidence 4899999999999887766555543
No 336
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=29.50 E-value=3e+02 Score=27.73 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=40.3
Q ss_pred CCccEEEEcCCCCCCCHH-------HHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHc
Q 001674 930 HQFDACFMDIQMPEMDGF-------EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 1002 (1033)
Q Consensus 930 ~~~DlIlmDi~MP~mdG~-------ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~a 1002 (1033)
...|.+.++...+...+. ...+.++. ...+||++..+-...++..+++++
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~pi~~~GGi~~~~~~~~~~~~ 191 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----------------------GSKVPVIAGGGINDPEDAAEALAL 191 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----------------------cCCCCEEEECCCCCHHHHHHHHHh
Confidence 457999888877755432 22333332 235899998877777999999999
Q ss_pred CCCEEEe
Q 001674 1003 GMDGYVS 1009 (1033)
Q Consensus 1003 G~ddyl~ 1009 (1033)
|+|.+..
T Consensus 192 Gad~v~v 198 (200)
T cd04722 192 GADGVIV 198 (200)
T ss_pred CCCEEEe
Confidence 9998864
No 337
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.46 E-value=5e+02 Score=25.64 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001674 394 GILVIASLVGHIFQA 408 (1033)
Q Consensus 394 ~~lvi~~l~~~i~~~ 408 (1033)
..+|+.+++|+++.+
T Consensus 13 igLvvGi~IG~li~R 27 (138)
T COG3105 13 IGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445554433
No 338
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.43 E-value=1.8e+02 Score=32.82 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=51.0
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-++|.+.+. ..+|+|++| +|+..+=-++.+.+++. .++ .++..++..
T Consensus 192 IeVEv~tleqa~ea~~--agaDiI~LD-n~~~e~l~~av~~~~~~----------------------~~~-~~leaSGGI 245 (284)
T PRK06096 192 IVVEADTPKEAIAALR--AQPDVLQLD-KFSPQQATEIAQIAPSL----------------------APH-CTLSLAGGI 245 (284)
T ss_pred EEEECCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHHhhcc----------------------CCC-eEEEEECCC
Confidence 4556779999999884 469999999 55544444444444421 112 478899999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001674 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-..
T Consensus 246 ~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 246 NLNTLKNYADCGIRLFI 262 (284)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998754
No 339
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=29.29 E-value=1.3e+02 Score=34.02 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=38.9
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHHhhCCC
Q 001674 981 HVPILAMTADVIQATYEECLRSGMDGY------VSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~ddy------l~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+|||++-+-.+.++..+++.+|+|.. +..|.-..++.+.+.+|+..
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999753 45687778888888777654
No 340
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=29.17 E-value=67 Score=33.90 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=37.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEE
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
|||||.+...-.-+...|++.|+++.+..+.+..++.+. ...||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE-NMKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh-hCCCCEEEE
Confidence 899999999999999999999999998887654444332 245887776
No 341
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=28.38 E-value=3.2e+02 Score=31.58 Aligned_cols=86 Identities=28% Similarity=0.374 Sum_probs=61.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhccccccccccc
Q 001674 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
||=|-+|...-.+.++ +++..|.+..++..-.-..+-. .+|..| +++++.||+.
T Consensus 147 KIRI~~d~~kTvd~ak-~~e~aG~~~ltVHGRtr~~kg~-------------~~~pad-~~~i~~v~~~----------- 200 (358)
T KOG2335|consen 147 KIRIFVDLEKTVDYAK-MLEDAGVSLLTVHGRTREQKGL-------------KTGPAD-WEAIKAVREN----------- 200 (358)
T ss_pred EEEecCcHHHHHHHHH-HHHhCCCcEEEEecccHHhcCC-------------CCCCcC-HHHHHHHHHh-----------
Confidence 6777788888777765 7788898888776544332211 233344 7899999972
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHH-cCCCEEEeC
Q 001674 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLR-SGMDGYVSK 1010 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~-aG~ddyl~K 1010 (1033)
.+.+||||=-.-...++..+|++ -|+|+.++-
T Consensus 201 -----------~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 201 -----------VPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred -----------CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 22378887666667789999999 899999863
No 342
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.08 E-value=5.6e+02 Score=28.62 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=56.3
Q ss_pred CeEEEEeCCHH---HHHHHHHHHhhCCCEEEEEeChH---HHHHHhCCCCCccEEEEcCCCCCCC--HHHHHHHHHhhcc
Q 001674 887 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGK---KATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREMEH 958 (1033)
Q Consensus 887 ~~ILIVDDn~~---n~~vl~~~L~~~g~~v~~a~~g~---eAl~~l~~~~~~DlIlmDi~MP~md--G~ea~~~IR~~e~ 958 (1033)
+++.+++-+.. ....++...+..|+.+..+.+.. ++++.+.....+|+||+|.- +.. .-+.++++++...
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~--Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA--GKNYRASETVEEMIETMG 181 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECC--CCCcCCHHHHHHHHHHHh
Confidence 45666655432 23334455556788888776653 34444433346999999973 322 2334455544211
Q ss_pred cccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHH----HHHcCCCEEEeCCCC
Q 001674 959 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE----CLRSGMDGYVSKPFE 1013 (1033)
Q Consensus 959 ~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~----~l~aG~ddyl~KP~~ 1013 (1033)
. ..+.-.+++++|.....+..+ .-..+.++.|.-=+|
T Consensus 182 ~------------------~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 182 Q------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred h------------------hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 0 112234677777655433322 234677777654343
No 343
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=27.82 E-value=3.9e+02 Score=29.35 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=33.6
Q ss_pred CCcEEEEccCCcHHHHHHHHHcC-CCEEEe------CCCCHHHHHHHHH
Q 001674 981 HVPILAMTADVIQATYEECLRSG-MDGYVS------KPFEAEQLYREVS 1022 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG-~ddyl~------KP~~~~~L~~~v~ 1022 (1033)
.+|||+.-+-.+.++..++++.| +|+.+. +=++.+++.+.++
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 58999999999999999999988 999554 4566666665554
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=27.39 E-value=5.3e+02 Score=29.76 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=58.2
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHhhCCCEEEEEeChH-------HHHHHhCCCCCccEEEEcCCCCCC-CHHHHHHHHH
Q 001674 886 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVERGK-------KATELLMPPHQFDACFMDIQMPEM-DGFEATKIIR 954 (1033)
Q Consensus 886 ~~~ILIVDDn~---~n~~vl~~~L~~~g~~v~~a~~g~-------eAl~~l~~~~~~DlIlmDi~MP~m-dG~ea~~~IR 954 (1033)
+.++++++-+. .....+.......|..+.....|. +|++... ...+|+||+|-- +.+ .-.+...+++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~-~~~~DvVLIDTa-Gr~~~~~~lm~eL~ 245 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK-ARGIDVVLIDTA-GRMHTDANLMDELK 245 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH-hCCCCEEEEECC-CccCCcHHHHHHHH
Confidence 45787787663 333445555666787776554432 4444443 356899999974 222 1234455555
Q ss_pred hhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHH--H--HcCCCEEEeCCCC
Q 001674 955 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC--L--RSGMDGYVSKPFE 1013 (1033)
Q Consensus 955 ~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~--l--~aG~ddyl~KP~~ 1013 (1033)
.+.. ...++.-++++.+....+....+ + ..|.++.|.-=+|
T Consensus 246 ~i~~------------------~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 246 KIVR------------------VTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHH------------------hhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 4321 01234456666665554444332 2 3688887654444
No 345
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.26 E-value=4e+02 Score=30.31 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=58.3
Q ss_pred HHHHHhhCCCEEE-EEeChHHHHHHhCCCCCccEEEEcCC---C--CCCCHHHHHHHHHhhcccccccccccccchhhhc
Q 001674 902 AAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ---M--PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 975 (1033)
Q Consensus 902 l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~---M--P~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~ 975 (1033)
+-..++..|..|. .+.+.++|.... ....|.|+..-. . ....-+++++++++.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~--~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~------------------- 159 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRME--KAGADAVIAEGMESGGHIGELTTMALVPQVVDA------------------- 159 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHH--HcCCCEEEEECcccCCCCCCCcHHHHHHHHHHH-------------------
Confidence 4566777787654 456777776655 346898887332 1 122337777888752
Q ss_pred ccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 976 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 976 ~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.++|||+--+-.+.++..+++..|+|+...
T Consensus 160 ----~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 160 ----VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred ----hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 148999988888899999999999998764
No 346
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.22 E-value=7.3e+02 Score=28.62 Aligned_cols=80 Identities=11% Similarity=0.209 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001674 414 AKVEEDYHGMMEL----KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489 (1033)
Q Consensus 414 ~~~~~~~~~~~~~----~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LI 489 (1033)
.+++++++++++. ++++++.....++-.+.++|..+. |..+...+.-+... .+.+..+.++.++...++....+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhH
Confidence 3455555555443 456777778888899999999885 45555555555433 45566777778877777766666
Q ss_pred HHHHHH
Q 001674 490 NEVLDQ 495 (1033)
Q Consensus 490 ndlLd~ 495 (1033)
.|+=.+
T Consensus 85 ~DmEa~ 90 (330)
T PF07851_consen 85 FDMEAF 90 (330)
T ss_pred HHHHhh
Confidence 665544
No 347
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.76 E-value=5.6e+02 Score=30.56 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=57.7
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHhhCCCEEEEEeChHHHHH---HhCCCCCccEEEEcCCCCCCCH--HHHHHHHHhhc
Q 001674 886 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKATE---LLMPPHQFDACFMDIQMPEMDG--FEATKIIREME 957 (1033)
Q Consensus 886 ~~~ILIVDDn~~---n~~vl~~~L~~~g~~v~~a~~g~eAl~---~l~~~~~~DlIlmDi~MP~mdG--~ea~~~IR~~e 957 (1033)
++++++++-|+. ....++..-+..|+.+..+.+..+..+ .+.....+|+||+|- |+.+- .+.++++++.-
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT--aGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETM 346 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC--ccccCcCHHHHHHHHHHH
Confidence 567888887653 223344444456888877766554433 333223699999996 33322 33444454421
Q ss_pred ccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHH---H-HHcCCCEEEeCCCC
Q 001674 958 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---C-LRSGMDGYVSKPFE 1013 (1033)
Q Consensus 958 ~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~---~-l~aG~ddyl~KP~~ 1013 (1033)
.. ..++-.+++++|.....+..+ . -..|.+++|.-=+|
T Consensus 347 k~------------------~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 347 GQ------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred hh------------------cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 10 122334666776544433222 2 24588888654444
No 348
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.74 E-value=3.8e+02 Score=30.29 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=57.4
Q ss_pred eEEEEeCCHHHHHHHHHHHh----hCCC---EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccc
Q 001674 888 KILIVDDNNVNLKVAAAGLK----RYGA---AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 960 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~----~~g~---~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~ 960 (1033)
.|||=|.+-...-.+...++ +.++ ..+.+++-+||.+.+. ...|+|++|= |..-+=-++.+.++.
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~--agaDiImLDn-mspe~l~~av~~~~~----- 240 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA--AGADIIMLDN-MSLEQIEQAITLIAG----- 240 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH--cCCCEEEECC-CCHHHHHHHHHHhcC-----
Confidence 46666655443322333332 2332 3445789999999884 4689999994 433332333333321
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE
Q 001674 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
-.++..++....+...+..+.|+|-..
T Consensus 241 ---------------------~~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 241 ---------------------RSRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred ---------------------ceEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 247888999999999999999998543
No 349
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=26.64 E-value=4.5e+02 Score=28.11 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=70.0
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEE-EEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001674 738 GMKALVVDPRPIRAKVSRYHIQRLGIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v-~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
...++++|++|+.+...+..|. .++.+ ..+.+..+++..+. .++.+++|..+...+ ........++...+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~--G~~~~~~~i~~~~p-- 80 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKK--LIHYWQDTLSRKNN-- 80 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCcc--HHHHHHHHHHHhCC--
Confidence 4569999999999998888887 44443 35567777766532 378999998765432 22111233333211
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001674 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~i~kPl~~s~l~~~l~~~l~ 863 (1033)
..+++++..... ..........+...++.|+.....+..+++.+..
T Consensus 81 ~~~vvvlt~~~~-~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 81 NIKILLLNTPED-YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred CCcEEEEECCch-hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 245555544322 1111111112556789999999999999988774
No 350
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=26.28 E-value=1.2e+03 Score=28.25 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001674 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIS 149 (1033)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~ 149 (1033)
|++++.+++.+++++.++|.......+..++.+.+..+..+..+...++...+.+..++....
T Consensus 24 ~i~~~~~i~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (570)
T PRK15426 24 HVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDAQLQYNVDKLIFLRNGMR 86 (570)
T ss_pred eEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444445555556666666666777777777777777777777777777666665543
No 351
>PRK15029 arginine decarboxylase; Provisional
Probab=26.28 E-value=3.6e+02 Score=34.67 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=53.0
Q ss_pred cEEEEECCchh--------hHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCcc-chHHHHHHH
Q 001674 739 MKALVVDPRPI--------RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS-VSTLFVNNL 809 (1033)
Q Consensus 739 ~~vlvvd~~~~--------~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~ 809 (1033)
+++++||++.. ........|+..|++|..+.+..+++..+... ..++++++|..+...+.. ....++..+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 36899999884 57778889999999999999999999987542 367899998765433321 112466666
Q ss_pred hh
Q 001674 810 RK 811 (1033)
Q Consensus 810 ~~ 811 (1033)
++
T Consensus 80 R~ 81 (755)
T PRK15029 80 HE 81 (755)
T ss_pred Hh
Confidence 65
No 352
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=26.12 E-value=2.3e+02 Score=30.13 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCEEE--eCCCCHHHHHHHHHh
Q 001674 981 HVPILAMTADVIQATYEECLRSGMDGYV--SKPFEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~ddyl--~KP~~~~~L~~~v~r 1023 (1033)
.+||++...-.+....+.|.++|+|..+ ..-++.+.+...+++
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 5899987655666688999999999997 333333555444443
No 353
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=26.11 E-value=2.4e+02 Score=19.91 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=31.4
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHH
Q 001674 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~ 778 (1033)
+++++++++.........+...|..+....+..++...+
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 40 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELL 40 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHH
Confidence 578888888888877788888999988888877776654
No 354
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.10 E-value=2e+02 Score=32.30 Aligned_cols=68 Identities=22% Similarity=0.108 Sum_probs=46.5
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+||.+.+. ..+|+|.+|= |+.-+=-++.+.++ ...| +..++..
T Consensus 197 IeVEv~tleea~ea~~--~gaDiI~LDn-~s~e~l~~av~~~~-------------------------~~~~-leaSGGI 247 (281)
T PRK06106 197 IEVEVDTLDQLEEALE--LGVDAVLLDN-MTPDTLREAVAIVA-------------------------GRAI-TEASGRI 247 (281)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCC-CCHHHHHHHHHHhC-------------------------CCce-EEEECCC
Confidence 3457889999999884 4689999994 43322122222221 1233 7889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001674 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-..
T Consensus 248 ~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 248 TPETAPAIAASGVDLIS 264 (281)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 355
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=25.91 E-value=4.6e+02 Score=27.34 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEE---EeChHHHHHHhCCCCCccEEEEcCCCCCCCHH-------HHHHHHHhhcc
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEMDGF-------EATKIIREMEH 958 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~-------ea~~~IR~~e~ 958 (1033)
|.+-++...........+++.|..+.. ..+..+.++.+ ....|.++.+-.-|+..|- +.++++|++-.
T Consensus 83 v~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~--~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~ 160 (210)
T TIGR01163 83 ITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYV--LPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMID 160 (210)
T ss_pred EEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHH--HhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHH
Q ss_pred cccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 959 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 959 ~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+ ..+++| |++.+-...+...++.+.|+|.++.
T Consensus 161 ~------------------~~~~~~-i~v~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 161 E------------------NGLSIL-IEVDGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred h------------------cCCCce-EEEECCcCHHHHHHHHHcCCCEEEE
No 356
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=25.90 E-value=12 Score=47.71 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=14.3
Q ss_pred CCc-ccchHHHHHHHHHHc
Q 001674 671 HGG-TGIGLSISKYLVGRM 688 (1033)
Q Consensus 671 ~~G-tGLGLsI~k~Lv~~m 688 (1033)
.+| .|.|++.|..|-+.+
T Consensus 246 SGGLHGVG~SVVNALS~~l 264 (903)
T PTZ00109 246 SSGLHGVGLSVVNALSSFL 264 (903)
T ss_pred cCcCCCcceeeeeeccCeE
Confidence 355 799999998888766
No 357
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.77 E-value=8.4e+02 Score=26.91 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=56.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEe---ChHHHHHHhCC-CCCccEEEEcCCCCCCC---------HHHHHHHHHh
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMP-PHQFDACFMDIQMPEMD---------GFEATKIIRE 955 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~-~~~~DlIlmDi~MP~md---------G~ea~~~IR~ 955 (1033)
|+|.|--......+...++++|.....+- +..+-+..+.. ...|.+++. . + +-. -.+.++++|+
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHHHHHh
Confidence 55555555555667777888897654322 22333333322 223555433 2 1 222 3456666665
Q ss_pred hcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCC
Q 001674 956 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 1011 (1033)
Q Consensus 956 ~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP 1011 (1033)
. ...||++=-+-...++..++.++|+|+++.-.
T Consensus 196 ~-----------------------~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 196 Y-----------------------SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred h-----------------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 2 23586654444458999999999999998764
No 358
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=25.71 E-value=2.7e+02 Score=28.70 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=23.1
Q ss_pred cCCCCeEEEEeCCHHH---HHHHHHHHhhCCCEEEE
Q 001674 883 LLLGRKILIVDDNNVN---LKVAAAGLKRYGAAVVC 915 (1033)
Q Consensus 883 ~~~~~~ILIVDDn~~n---~~vl~~~L~~~g~~v~~ 915 (1033)
...+++||||||--.. ...+...|++.|..|..
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~ 140 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAG 140 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEE
Confidence 3468899999997766 44555666777766553
No 359
>PLN02335 anthranilate synthase
Probab=25.31 E-value=1.8e+02 Score=31.31 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=33.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEE
Q 001674 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
.++|||||-..-.-..+...|++.|+.+.++.+....++.+. ...||.|++
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~-~~~~d~iVi 68 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK-RKNPRGVLI 68 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-hcCCCEEEE
Confidence 468999985454556688889999999888876421123222 235776655
No 360
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=25.19 E-value=3.7e+02 Score=29.90 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=50.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 001674 86 RKVLITW-LLFWTLVSLWIFWYMSSQATEKRR--EALGSMCDERARMLQDQFNVSMNH-VQAMSILIST 150 (1033)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~-~~~l~~l~~~ 150 (1033)
|+++.-- +.+-+++.+.+....+.+...+|. |.+.+...+++..++.|++.++|- ++.+.++.+.
T Consensus 11 r~~~~s~~LPali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~ 79 (297)
T COG3452 11 RRLLKSNYLPALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKH 79 (297)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Confidence 3444333 666666666667777777776555 889999999999999999999986 9999999644
No 361
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=25.15 E-value=3.4e+02 Score=30.31 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=62.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEE-----EeChHHHHHHhCCCCCccEEEEcCCC---------CCCCH------
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVC-----VERGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 946 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~-----a~~g~eAl~~l~~~~~~DlIlmDi~M---------P~mdG------ 946 (1033)
-+||=+|-++.-.+.....-++.|..+.- -+-.+.-..++ +.+.||++++==+= -+++.
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 183 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI-EEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKY 183 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH-HHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHH
Confidence 48999999999998888888888876552 22334444555 56889998763221 01111
Q ss_pred -HHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCC
Q 001674 947 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005 (1033)
Q Consensus 947 -~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~d 1005 (1033)
.|+.+..|+.++.. + =+++-|-+-++..+..++|||+
T Consensus 184 FVeaVk~aR~y~~~~--------------------D--~LVIFAGACQS~yEall~AGAN 221 (283)
T TIGR02855 184 FVETVREARKYVPSL--------------------D--QLVIFAGACQSHFESLIRAGAN 221 (283)
T ss_pred HHHHHHHHHhcCCCc--------------------c--cEEEEcchhHHHHHHHHHcCcc
Confidence 35667777655421 1 1333456778889999999997
No 362
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=25.00 E-value=2e+02 Score=30.77 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=29.0
Q ss_pred CCcEEEEccC----------CcHHHHHHHHHcCCCEEEe-------CC--CCHHHHHHHHHh
Q 001674 981 HVPILAMTAD----------VIQATYEECLRSGMDGYVS-------KP--FEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPIIalTa~----------~~~~~~~~~l~aG~ddyl~-------KP--~~~~~L~~~v~r 1023 (1033)
.+|||.++.. ...+...+|.++|+| ++. +| -+..++.+.+++
T Consensus 56 ~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 56 DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 4788766531 235678899999999 554 45 566777777776
No 363
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=24.82 E-value=7.8e+02 Score=25.34 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 001674 391 TSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 450 (1033)
Q Consensus 391 ~~i~~lvi~~l~~~i~~~~~~-----r~~~~~~~~~~~~~~~~~ae~a~~aKs~Fla~vSHELRT 450 (1033)
.++.++++++++.++++..+. |...+.+......+.+.++++....-.+-++..-.|...
T Consensus 24 ~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 88 (173)
T PRK13453 24 TVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQK 88 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333 333344444444444444444333333334444444433
No 364
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=24.82 E-value=2.3e+02 Score=32.04 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=46.9
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+||.+.+. ..+|+|.+|-.-| |-++++-+.. ..+ .+|..++..
T Consensus 211 IeVEv~sleea~ea~~--~gaDiI~LDn~s~-----e~~~~av~~~---------------------~~~-~~ieaSGGI 261 (296)
T PRK09016 211 VEVEVENLDELDQALK--AGADIIMLDNFTT-----EQMREAVKRT---------------------NGR-ALLEVSGNV 261 (296)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCCCCh-----HHHHHHHHhh---------------------cCC-eEEEEECCC
Confidence 5567889999999884 4689999995333 2233222210 012 367789999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001674 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+.-+.|+|-..
T Consensus 262 ~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 262 TLETLREFAETGVDFIS 278 (296)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 365
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.79 E-value=5e+02 Score=29.17 Aligned_cols=96 Identities=24% Similarity=0.304 Sum_probs=62.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEe-----ChHHHHHHhCCCCCccEEEEcCCC---------CCCCH------
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVE-----RGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 946 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~-----~g~eAl~~l~~~~~~DlIlmDi~M---------P~mdG------ 946 (1033)
-|||=+|-++.-.+.....-+++|..+.-.. -.+.-.+++ +.+.||++++==+= -.++.
T Consensus 106 GkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 184 (287)
T PF05582_consen 106 GKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL-EEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKY 184 (287)
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH-HHcCCCEEEEeCchhhhcCCCChhhhhhhhccHH
Confidence 4899999999999988888888887665332 223333444 56889998763211 01111
Q ss_pred -HHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCC
Q 001674 947 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005 (1033)
Q Consensus 947 -~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~d 1005 (1033)
.|+.+..|+.++.. +- +++-|-+-++..+..++|||+
T Consensus 185 FVeaV~~aR~~ep~~--------------------D~--LVIfAGACQS~fEall~AGAN 222 (287)
T PF05582_consen 185 FVEAVKEARKYEPNL--------------------DD--LVIFAGACQSHFEALLEAGAN 222 (287)
T ss_pred HHHHHHHHHhcCCCc--------------------cc--EEEEcchhHHHHHHHHHcCcc
Confidence 35777777765432 11 223456678889999999997
No 366
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=24.52 E-value=6e+02 Score=26.41 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=49.1
Q ss_pred HHHHhhCCCEEEEEe---ChHHHHHHhCCCCCccEEEEcCCCCCCCH-------HHHHHHHHhhcccccccccccccchh
Q 001674 903 AAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 903 ~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-------~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
...+++.|..+.... +..+.++.+. . ..|.++.+.-.|+-+| .+..+++|++-.
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~-------------- 161 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYL-D-EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIP-------------- 161 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHH-h-hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHH--------------
Confidence 444556676544332 2344455442 2 2688877765566544 344455554311
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
...+++||++ .+-...+...++.++|+|+++.
T Consensus 162 ----~~~~~~pi~v-~GGI~~env~~~~~~gad~iiv 193 (211)
T cd00429 162 ----ENNLNLLIEV-DGGINLETIPLLAEAGADVLVA 193 (211)
T ss_pred ----hcCCCeEEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 0123467654 4455668889999999999875
No 367
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.36 E-value=2.2e+02 Score=32.18 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=47.9
Q ss_pred EEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001674 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+|+.+.+. ..+|+|++| +|+..+=-++.+.++. -.++-.++..
T Consensus 208 IeVEvetleea~eA~~--aGaDiImLD-nmspe~l~~av~~~~~--------------------------~~~lEaSGGI 258 (294)
T PRK06978 208 VQIEVETLAQLETALA--HGAQSVLLD-NFTLDMMREAVRVTAG--------------------------RAVLEVSGGV 258 (294)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHhhcC--------------------------CeEEEEECCC
Confidence 3456789999999884 568999999 4443333333333321 2468889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001674 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-..
T Consensus 259 t~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 259 NFDTVRAFAETGVDRIS 275 (294)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998543
No 368
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.77 E-value=6.9e+02 Score=27.83 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=57.2
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHhhCCCEEEEEeCh-------HHHHHHhCCCCCccEEEEcCCCCCCCH--HHHHHHH
Q 001674 886 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDG--FEATKII 953 (1033)
Q Consensus 886 ~~~ILIVDDn~~---n~~vl~~~L~~~g~~v~~a~~g-------~eAl~~l~~~~~~DlIlmDi~MP~mdG--~ea~~~I 953 (1033)
+++|+++|-|.. ..+.+....+..|..+.....+ .+++.... .+.||+||+|. |+... -+...++
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~-~~~~D~ViIDT--~G~~~~d~~~~~el 176 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK-ARNIDVVLIDT--AGRLQNKVNLMDEL 176 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH-HCCCCEEEEeC--CCCCcchHHHHHHH
Confidence 568999996642 2344555666777666554333 13333332 35699999996 33322 2333444
Q ss_pred HhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHH----HcCCCEEEeC
Q 001674 954 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSK 1010 (1033)
Q Consensus 954 R~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l----~aG~ddyl~K 1010 (1033)
+++........ ...++-.++++.+....+....+. ..|.++.|.=
T Consensus 177 ~~~~~~~~~~~------------~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 177 KKIKRVIKKVD------------KDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred HHHHHHHhccc------------CCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEE
Confidence 43211000000 012344578888876665444433 2567776543
No 369
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.73 E-value=4.8e+02 Score=31.12 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=59.2
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCHH--HHHHHHHhhcccc
Q 001674 886 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF--EATKIIREMEHNF 960 (1033)
Q Consensus 886 ~~~ILIVDDn~~n---~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~--ea~~~IR~~e~~~ 960 (1033)
+++|.+|+-++.- ...+...-+..|..+..+.+..+....+..-..+|+||+|. |++... ..+..++++-..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt--~G~~~~d~~~~~~L~~ll~~- 327 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT--AGRSQRDKRLIEELKALIEF- 327 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC--CCCCCCCHHHHHHHHHHHhc-
Confidence 4689999887631 12233334446777777777665555443334699999996 333322 233344432110
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHH----HcCCCEEEeCCCC
Q 001674 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 1013 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l----~aG~ddyl~KP~~ 1013 (1033)
...+.-..+++++.....+..+.. ..|.+.+|.--+|
T Consensus 328 ----------------~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlD 368 (424)
T PRK05703 328 ----------------SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLD 368 (424)
T ss_pred ----------------cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 001122367788877766655543 3466666544343
No 370
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=23.70 E-value=1.3e+02 Score=31.41 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=35.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEE
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
|||||.....-.-+...|++.|++|..+.+..--++.+. ...||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE-QLAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCeEEE
Confidence 899999999999999999999999999887642223332 235676655
No 371
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=23.63 E-value=1.2e+02 Score=34.07 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCcEE--EEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHH
Q 001674 981 HVPIL--AMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 1021 (1033)
Q Consensus 981 ~iPII--alTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~v 1021 (1033)
.+||| +.-+-.+.++...++++|+|+++ .|.-++++..+.+
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akaf 244 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAI 244 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHH
Confidence 58998 77777799999999999999985 4544555544333
No 372
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.61 E-value=1.6e+02 Score=32.77 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=26.4
Q ss_pred CCCcEEEEccCCc------HHHHHHHHHcCCCEEEeCCCCH
Q 001674 980 FHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEA 1014 (1033)
Q Consensus 980 ~~iPIIalTa~~~------~~~~~~~l~aG~ddyl~KP~~~ 1014 (1033)
..+||+.||=... +.-..+|.++|+|+.|.--+-.
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ 133 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPP 133 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCCh
Confidence 4689999985443 4557789999999999864433
No 373
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=23.30 E-value=6e+02 Score=27.91 Aligned_cols=85 Identities=16% Similarity=0.050 Sum_probs=58.6
Q ss_pred eChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHH
Q 001674 917 ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 996 (1033)
Q Consensus 917 ~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~ 996 (1033)
......++++. ...||.|+.|++=-.+|--++...|+..+. ..-.|++= ....+..+.
T Consensus 20 ~~~p~~~e~~~-~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~--------------------~g~~~~VR-v~~~~~~~i 77 (249)
T TIGR02311 20 LADPYAAEICA-GAGFDWLLIDGEHAPNDVRTILSQLQALAP--------------------YPSSPVVR-PAIGDPVLI 77 (249)
T ss_pred CCCcHHHHHHH-hcCCCEEEEeccCCCCCHHHHHHHHHHHHh--------------------cCCCcEEE-CCCCCHHHH
Confidence 33445556553 356999999999888888888887776421 11233443 445566789
Q ss_pred HHHHHcCCCEEEe-CCCCHHHHHHHHHh
Q 001674 997 EECLRSGMDGYVS-KPFEAEQLYREVSR 1023 (1033)
Q Consensus 997 ~~~l~aG~ddyl~-KP~~~~~L~~~v~r 1023 (1033)
.+++++|+++.+. |--+.++..+.++.
T Consensus 78 ~~~Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 78 KQLLDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred HHHhCCCCCEEEecCcCCHHHHHHHHHH
Confidence 9999999998864 66678887777664
No 374
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.05 E-value=1e+03 Score=26.15 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001674 387 LAISTSIGILVIASLVGHIFQATVN 411 (1033)
Q Consensus 387 ~~~~~~i~~lvi~~l~~~i~~~~~~ 411 (1033)
+.+..++-+++++.++.++++..+.
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~ 31 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPII 31 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555566555443
No 375
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.94 E-value=2.9e+02 Score=30.38 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=41.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCC--EEE-EEeChHHHHHHhCC----CCCccEEEEcCC
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP----PHQFDACFMDIQ 940 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eAl~~l~~----~~~~DlIlmDi~ 940 (1033)
-+|.-+|-++.....++..+++.|+ .|. ...+..+.+..+.. ...||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4799999999999999999999985 333 34555666655422 257999999987
No 376
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=22.94 E-value=5.7e+02 Score=32.64 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=72.5
Q ss_pred HHHHHHHhhCCCEEEE--EeChHHHHHHhCCCCCccEEEEcCCCC-CC----CHHHHHHHHHhhcccccccccccccchh
Q 001674 900 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMP-EM----DGFEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 900 ~vl~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi~MP-~m----dG~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
......|++.|+.+.. +.+|...+..+. .-++|.|=+|-..= .. ....+++.|..+..
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~-~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 745 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLV-SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQ-------------- 745 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHh-hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHH--------------
Confidence 3445578899998866 457777777774 46799999987541 11 12334444443211
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCC----EEEeCCCCHHHHHHHHHhhCC
Q 001674 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~d----dyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.-++.+| .++-.+.+....+.+.|+| .|+.||...++|...+++|.+
T Consensus 746 ------~~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~~ 796 (799)
T PRK11359 746 ------SLNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLP 796 (799)
T ss_pred ------HCCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhccc
Confidence 1134444 5677888888899999998 468999999999999998854
No 377
>PRK13566 anthranilate synthase; Provisional
Probab=22.90 E-value=2.3e+02 Score=36.25 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=40.6
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEE
Q 001674 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 883 ~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
...+++|||||-...+...+...|++.|++|..+...... +.+. ...||.|++
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~-~~~~DgVVL 575 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLD-RVNPDLVVL 575 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhh-hcCCCEEEE
Confidence 3457899999999888999999999999999988776532 2222 246898765
No 378
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.82 E-value=82 Score=25.22 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=7.8
Q ss_pred HHHhhhhHHH
Q 001674 117 EALGSMCDER 126 (1033)
Q Consensus 117 ~~~~~~~~~~ 126 (1033)
+.|.+|||+.
T Consensus 22 ~ald~~CDQg 31 (47)
T PRK10299 22 QVFNMMCDQD 31 (47)
T ss_pred HHHHHHhcCC
Confidence 5678999875
No 379
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.39 E-value=1.4e+02 Score=32.87 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=48.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCC------CEEEEEeChHHHHHHhCCCCCccEEEEcCCCCCCCH-----HHHHHHHHh
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYG------AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIRE 955 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g------~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-----~ea~~~IR~ 955 (1033)
++|-+||=++...++++..+.... ---....||.+-++.... ..||+|++|+.-|...+ .|..+.+++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDVIIVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEEEEEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccEEEEeCCCCCCCcccccCHHHHHHHHh
Confidence 579999999999999999886521 123377899988887532 27999999999887554 355555554
No 380
>PRK05637 anthranilate synthase component II; Provisional
Probab=22.32 E-value=1.6e+02 Score=31.41 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=37.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEE
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
++||++|-..-+-.-+...|++.|+.+.++.+.... +.+. ...||.|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~-~~l~-~~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPV-EEIL-AANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCH-HHHH-hcCCCEEEE
Confidence 479999998888899999999999999988775432 2221 235788777
No 381
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=22.24 E-value=9.3e+02 Score=29.51 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=61.3
Q ss_pred CeEEEEeCCH---HHHHHHHHHHhh-C-CCEEEE--EeChHHHHHHhCCCCCccEEEEcC--------------CCCCCC
Q 001674 887 RKILIVDDNN---VNLKVAAAGLKR-Y-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEMD 945 (1033)
Q Consensus 887 ~~ILIVDDn~---~n~~vl~~~L~~-~-g~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi--------------~MP~md 945 (1033)
--++++|--. .+..-.-..+++ + +..+.. +.+.++|..+.. ...|.|..-+ -.|...
T Consensus 261 ~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~ 338 (505)
T PLN02274 261 VDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCccccCccccccCCCccc
Confidence 3577776432 221123334443 4 345543 678888888763 5689887632 123333
Q ss_pred HHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 946 G~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
-+..+.++.+ ...+|||+--+-....+..+|+.+||+.++.
T Consensus 339 ~i~~~~~~~~-----------------------~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 339 AVYKVASIAA-----------------------QHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred HHHHHHHHHH-----------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444443 1258999999999999999999999998764
No 382
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=22.17 E-value=3e+02 Score=31.36 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=45.5
Q ss_pred EEEEeChHHHHHHhC----CCCCccEEEEcCCC---CCC---CHHHHHHHHHhhcccccccccccccchhhhcccCCCCC
Q 001674 913 VVCVERGKKATELLM----PPHQFDACFMDIQM---PEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 982 (1033)
Q Consensus 913 v~~a~~g~eAl~~l~----~~~~~DlIlmDi~M---P~m---dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~i 982 (1033)
.+.+++-+||.+.+. .....|+|++|= | |+- +=-++-+.++.. ....
T Consensus 207 eVEv~tleea~ea~~~~~~~~agaDiImLDn-m~~~~~~~~~~~e~l~~av~~~----------------------~~~~ 263 (308)
T PLN02716 207 EVETRTLEEVKEVLEYLSDTKTSLTRVMLDN-MVVPLENGDVDVSMLKEAVELI----------------------NGRF 263 (308)
T ss_pred EEEECCHHHHHHHHHhcccccCCCCEEEeCC-CcccccccCCCHHHHHHHHHhh----------------------CCCc
Confidence 446788999988874 014589999994 4 221 222222222211 1123
Q ss_pred cEEEEccCCcHHHHHHHHHcCCCEEE
Q 001674 983 PILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 983 PIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
.+-.++....+...+..+.|+|-..
T Consensus 264 -~lEaSGGIt~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 264 -ETEASGNVTLDTVHKIGQTGVTYIS 288 (308)
T ss_pred -eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 4888999999999999999998543
No 383
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.17 E-value=8.7e+02 Score=24.95 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001674 412 RIAKVEEDYHGMMELKKKAE 431 (1033)
Q Consensus 412 r~~~~~~~~~~~~~~~~~ae 431 (1033)
|...+........+.+++++
T Consensus 50 R~~~I~~~l~~Ae~~~~eA~ 69 (175)
T PRK14472 50 REKGIQSSIDRAHSAKDEAE 69 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 384
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=22.12 E-value=31 Score=22.84 Aligned_cols=9 Identities=22% Similarity=0.323 Sum_probs=7.5
Q ss_pred hhccccccc
Q 001674 29 SMNCFMNYE 37 (1033)
Q Consensus 29 ~~~~~~~~~ 37 (1033)
.+|||.+.|
T Consensus 5 CiNWFE~~g 13 (22)
T PF08452_consen 5 CINWFESRG 13 (22)
T ss_pred EeehhhhCC
Confidence 479999977
No 385
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.92 E-value=7.8e+02 Score=29.06 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=61.6
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEcCC--CCCCCHHHHHHHHHhhcccc
Q 001674 886 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHNF 960 (1033)
Q Consensus 886 ~~~ILIVDDn~~n---~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~--MP~mdG~ea~~~IR~~e~~~ 960 (1033)
+++|.+|+-|..- ...++.+.+..|..+..+.+..+....+.....+|+||+|-- +| .|-.. +.+++++-..
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~- 282 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSP-KDFMK-LAEMKELLNA- 282 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHh-
Confidence 5678888877531 222444444467777777776655544433357999999974 22 23332 3344432110
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHH----cCCCEEEeCCCC
Q 001674 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPFE 1013 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~----aG~ddyl~KP~~ 1013 (1033)
...+.-.+++++|.....+..+.++ .|.++.|.-=+|
T Consensus 283 ----------------~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 283 ----------------CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred ----------------cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 0111235788898888777765543 457777543333
No 386
>PRK04302 triosephosphate isomerase; Provisional
Probab=21.88 E-value=9.9e+02 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=25.6
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 981 HVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
++||++--+-...++..++.+.|+|+++.
T Consensus 173 ~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 173 DVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 58999888888899999999999999875
No 387
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=21.75 E-value=1.1e+02 Score=32.01 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=36.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEeChHHHHHHhCCCCCccEEEEc
Q 001674 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmD 938 (1033)
||+||.....-.-+...|++.|+++..+.+.+..++.+. ...||.|++-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID-ALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCEEEEc
Confidence 899999999999999999999999998877642233332 2357877663
No 388
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=21.35 E-value=4.7e+02 Score=27.38 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=43.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCE--EE-EEeChHHHHHHhCC-CCCccEEEEcCCCCCCCHHHHHHHH
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKII 953 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eAl~~l~~-~~~~DlIlmDi~MP~mdG~ea~~~I 953 (1033)
.++..||.++...+.++.-++..|.. +. ...|..+++..+.. ...+|+|++|--...-.--++.+.+
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 37999999999999999988887763 33 33455455554422 2348999999765432223344444
No 389
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=21.21 E-value=65 Score=39.67 Aligned_cols=51 Identities=35% Similarity=0.660 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCChhhHhh--------ccCcccccC---CCCCCCCCc-ccchHHHHHHHHHHc
Q 001674 638 IVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRM 688 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~--------IFepF~q~d---~s~s~~~~G-tGLGLsI~k~Lv~~m 688 (1033)
.|+|.|+|-|||-+..++ ||......+ .......|| .|.|.|.|..|-+..
T Consensus 69 sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 69 SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred eEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceE
Confidence 389999999999887443 454432211 111122234 688999888876643
No 390
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=20.86 E-value=6.8e+02 Score=30.56 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=58.2
Q ss_pred CCeEEEEeC----CHHHHHHHHHHHhhC-CCEEEE--EeChHHHHHHhCCCCCccEEEEcC--------------CCCCC
Q 001674 886 GRKILIVDD----NNVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEM 944 (1033)
Q Consensus 886 ~~~ILIVDD----n~~n~~vl~~~L~~~-g~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi--------------~MP~m 944 (1033)
|-.++++|- .....+.++.+=+.+ +..+.. +.+.++|..+.. ...|.|...+ -.|
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~Gs~~~t~~~~~~g~p-- 328 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSGSICITQEVCAVGRP-- 328 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCCcccccchhccCCCC--
Confidence 345777774 333334444444443 233333 455666666653 4578775533 223
Q ss_pred CHHHHHHHHHhhcccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001674 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 945 dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.+.++..+++.-. ...+|||+=-+-....+..+|+.+||+..+.
T Consensus 329 -~~~ai~~~~~~~~--------------------~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 329 -QASAVYHVARYAR--------------------ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred -hHHHHHHHHHHHh--------------------hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 2344444443211 1248999988888899999999999998764
No 391
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=20.75 E-value=2.3e+02 Score=27.53 Aligned_cols=34 Identities=6% Similarity=0.088 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001674 120 GSMCDERARMLQDQFNVSMNHVQAMSILISTFHH 153 (1033)
Q Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~ 153 (1033)
..-..+..+-+.++|+....-++.++..+++.++
T Consensus 76 ~~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f 109 (118)
T PRK10697 76 QPSSSELLDEVDRELAAGEQRLREMERYVTSDTF 109 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5567788889999999999999999999988543
No 392
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=20.74 E-value=1.6e+02 Score=32.97 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCcEE--EEccCCcHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHh
Q 001674 981 HVPIL--AMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPII--alTa~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r 1023 (1033)
.+||| +..+-...++..+++++|+|+++. +.-++.+..+.+.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ 243 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVE 243 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHH
Confidence 48997 777666999999999999999864 33345444444433
No 393
>PRK12704 phosphodiesterase; Provisional
Probab=20.71 E-value=81 Score=38.62 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=37.2
Q ss_pred cEEEEccCCcHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001674 983 PILAMTADVIQA--TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 983 PIIalTa~~~~~--~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+|++|+.+... ....+++.|+.|+..||+..++++..+++-+
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 478899877765 8889999999999999999999998887643
No 394
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.64 E-value=2.9e+02 Score=29.22 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=60.1
Q ss_pred HHHHHHHhhCCCEEEEE--eChHHHHHHhCCCCCccEEEEcCCCC-C----CCHHHHHHHHHhhcccccccccccccchh
Q 001674 900 KVAAAGLKRYGAAVVCV--ERGKKATELLMPPHQFDACFMDIQMP-E----MDGFEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 900 ~vl~~~L~~~g~~v~~a--~~g~eAl~~l~~~~~~DlIlmDi~MP-~----mdG~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
.-....|++.|+.+..- ..+...++.+. .-.||.|=+|..+. . ......++.|....+
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~-~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~-------------- 199 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLK-RLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH-------------- 199 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHHH-hCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH--------------
Confidence 34556678889987764 35556566664 45699999996542 1 122444555544321
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCC----EEEeCCCCHH
Q 001674 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAE 1015 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~d----dyl~KP~~~~ 1015 (1033)
...+++ +.++-.+.++...+.+.|++ .|+.||.+.+
T Consensus 200 ------~~~~~v-ia~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 200 ------SLGLKV-VAEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred ------HCCCeE-EEEecCCHHHHHHHHHcCCCeeeeceeccCCCCC
Confidence 123444 46888889999999999996 4677887653
No 395
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=20.56 E-value=3.6e+02 Score=29.27 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=41.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCE--EE-EEeChHHHHHHhCC---CCCccEEEEcCC
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQ 940 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eAl~~l~~---~~~~DlIlmDi~ 940 (1033)
.+|.-+|=++.....++..+++.|+. +. ...+..+.+..+.. ...||+||+|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 48999999999999999999998863 33 34566666665421 357999999975
No 396
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.38 E-value=6.8e+02 Score=27.31 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=35.2
Q ss_pred CCcEEEEccCCcHHHHHHHHHc-CCCEEEe------CCCCHHHHHHHHHh
Q 001674 981 HVPILAMTADVIQATYEECLRS-GMDGYVS------KPFEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~a-G~ddyl~------KP~~~~~L~~~v~r 1023 (1033)
.+|||+--+-.+.++..++++. |+++.+. .=++.+++.+.+++
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 5899999999999999999975 9998886 55777777776654
No 397
>PLN02823 spermine synthase
Probab=20.30 E-value=2.4e+02 Score=32.55 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=40.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-----CCEEE-EEeChHHHHHHhCCCCCccEEEEcCCCCC
Q 001674 887 RKILIVDDNNVNLKVAAAGLKRY-----GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE 943 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-----g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~ 943 (1033)
.+|-+||=|+...++++..+... +-.+. ...||.+.++.. ...||+||+|+.-|.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~ 188 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPV 188 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCcc
Confidence 47999999999999999988532 12333 456788877643 457999999986553
Done!