Query 001675
Match_columns 1033
No_of_seqs 261 out of 1690
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 5E-166 1E-170 1399.6 98.3 998 1-1020 1-1009(1010)
2 COG5656 SXM1 Importin, protein 100.0 3E-123 6E-128 1012.8 80.9 954 3-1010 2-969 (970)
3 KOG1992 Nuclear export recepto 100.0 2E-102 5E-107 860.3 71.4 906 2-1011 3-959 (960)
4 KOG1993 Nuclear transport rece 100.0 6.7E-79 1.4E-83 670.4 65.4 903 6-1010 2-976 (978)
5 KOG2274 Predicted importin 9 [ 100.0 2.3E-74 5E-79 644.8 68.6 915 1-1009 1-1004(1005)
6 COG5657 CSE1 CAS/CSE protein i 100.0 1.6E-58 3.4E-63 520.5 61.6 902 1-1009 1-944 (947)
7 KOG2023 Nuclear transport rece 100.0 1.8E-52 3.9E-57 453.1 44.8 761 3-872 12-837 (885)
8 KOG2171 Karyopherin (importin) 100.0 1.3E-46 2.7E-51 437.2 66.0 675 1-778 1-694 (1075)
9 PF08506 Cse1: Cse1; InterPro 100.0 6.2E-48 1.3E-52 423.7 25.3 349 150-524 1-370 (370)
10 PF03378 CAS_CSE1: CAS/CSE pro 100.0 7.3E-41 1.6E-45 375.1 30.3 404 533-1008 16-435 (435)
11 KOG1241 Karyopherin (importin) 100.0 2.9E-35 6.3E-40 325.7 48.2 672 5-772 2-728 (859)
12 COG5215 KAP95 Karyopherin (imp 100.0 2E-30 4.3E-35 277.4 50.9 690 1-774 1-730 (858)
13 COG5101 CRM1 Importin beta-rel 99.9 4.3E-22 9.2E-27 215.8 50.0 712 2-774 12-834 (1053)
14 KOG2022 Nuclear transport rece 99.9 3.3E-17 7.1E-22 186.0 63.1 637 3-683 6-751 (982)
15 KOG2171 Karyopherin (importin) 99.7 4.4E-11 9.5E-16 141.8 68.1 470 14-588 47-569 (1075)
16 KOG2021 Nuclear mRNA export fa 99.7 2.5E-11 5.3E-16 136.1 54.3 500 5-552 4-585 (980)
17 KOG1241 Karyopherin (importin) 99.5 1.7E-10 3.8E-15 130.2 43.4 442 315-797 230-711 (859)
18 KOG2020 Nuclear transport rece 99.5 3.4E-11 7.3E-16 145.8 39.3 171 4-185 10-200 (1041)
19 KOG1991 Nuclear transport rece 99.5 1.7E-08 3.7E-13 117.9 57.7 541 100-735 16-693 (1010)
20 KOG2081 Nuclear transport regu 99.5 2.6E-10 5.6E-15 125.9 39.1 499 22-583 2-551 (559)
21 PF03810 IBN_N: Importin-beta 99.3 2.7E-12 5.8E-17 109.7 7.8 75 24-98 1-76 (77)
22 KOG2023 Nuclear transport rece 99.3 9.5E-08 2.1E-12 106.6 42.3 674 15-806 59-826 (885)
23 COG5215 KAP95 Karyopherin (imp 99.3 4.1E-07 8.9E-12 99.8 45.9 454 315-808 234-722 (858)
24 KOG1824 TATA-binding protein-i 99.0 0.00017 3.6E-09 84.5 51.6 648 8-778 9-745 (1233)
25 KOG1824 TATA-binding protein-i 98.9 0.00067 1.5E-08 79.7 54.9 486 97-669 183-724 (1233)
26 PF08389 Xpo1: Exportin 1-like 98.7 1.2E-07 2.6E-12 92.8 11.7 108 101-209 1-115 (148)
27 KOG0213 Splicing factor 3b, su 98.2 0.0038 8.3E-08 71.6 32.6 278 502-808 718-1001(1172)
28 KOG1410 Nuclear transport rece 98.1 0.034 7.4E-07 63.4 38.4 145 1-155 1-160 (1082)
29 PF01602 Adaptin_N: Adaptin N 98.0 0.067 1.5E-06 64.3 40.1 502 4-665 7-522 (526)
30 KOG1020 Sister chromatid cohes 97.9 0.023 5E-07 70.8 34.0 386 387-802 794-1259(1692)
31 KOG0212 Uncharacterized conser 97.9 0.0067 1.5E-07 67.9 26.2 378 383-796 13-405 (675)
32 KOG0915 Uncharacterized conser 97.8 0.061 1.3E-06 67.3 34.6 326 429-809 970-1319(1702)
33 KOG1242 Protein containing ada 97.8 0.0083 1.8E-07 68.6 25.4 236 496-760 212-449 (569)
34 PF01602 Adaptin_N: Adaptin N 97.8 0.02 4.4E-07 68.8 30.6 203 429-668 92-297 (526)
35 KOG0212 Uncharacterized conser 97.6 0.14 3.1E-06 57.7 31.1 286 494-808 78-376 (675)
36 KOG1059 Vesicle coat complex A 97.5 0.078 1.7E-06 61.4 28.2 138 462-624 146-284 (877)
37 PF10508 Proteasom_PSMB: Prote 97.5 0.031 6.8E-07 66.0 26.6 204 462-686 79-294 (503)
38 PTZ00429 beta-adaptin; Provisi 97.5 0.48 1E-05 58.1 44.5 127 385-531 383-509 (746)
39 PLN03200 cellulose synthase-in 97.5 0.92 2E-05 60.8 53.6 373 386-825 546-933 (2102)
40 PF10508 Proteasom_PSMB: Prote 97.4 0.05 1.1E-06 64.3 26.4 358 465-854 43-419 (503)
41 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.001 2.3E-08 58.6 8.9 79 477-557 3-82 (97)
42 KOG2274 Predicted importin 9 [ 97.3 0.73 1.6E-05 55.2 59.2 269 496-789 445-729 (1005)
43 PTZ00429 beta-adaptin; Provisi 97.3 0.27 5.7E-06 60.2 30.5 91 429-531 118-210 (746)
44 PLN03200 cellulose synthase-in 97.3 1.6 3.5E-05 58.6 54.7 598 4-707 13-680 (2102)
45 KOG1943 Beta-tubulin folding c 97.3 0.91 2E-05 55.6 42.6 349 84-531 337-707 (1133)
46 KOG1060 Vesicle coat complex A 97.2 0.28 6.1E-06 57.6 28.5 91 429-531 121-211 (968)
47 KOG1242 Protein containing ada 97.2 0.45 9.8E-06 54.9 29.8 323 386-736 33-384 (569)
48 KOG0915 Uncharacterized conser 97.0 1.8 3.9E-05 55.1 40.0 304 428-777 1051-1366(1702)
49 KOG1248 Uncharacterized conser 97.0 1.8 3.9E-05 53.8 55.3 325 496-857 514-858 (1176)
50 PF03378 CAS_CSE1: CAS/CSE pro 96.9 0.077 1.7E-06 60.9 20.7 223 572-825 17-252 (435)
51 KOG0166 Karyopherin (importin) 96.9 0.0079 1.7E-07 68.3 11.9 223 429-668 165-394 (514)
52 COG5181 HSH155 U2 snRNP splice 96.8 0.65 1.4E-05 53.1 25.6 294 499-822 520-826 (975)
53 COG5096 Vesicle coat complex, 96.8 2 4.2E-05 52.0 32.1 124 456-588 88-211 (757)
54 KOG0213 Splicing factor 3b, su 96.7 2 4.3E-05 50.4 54.8 173 436-626 778-957 (1172)
55 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0014 3.1E-08 51.4 2.9 54 474-527 1-55 (55)
56 KOG0166 Karyopherin (importin) 96.7 0.31 6.8E-06 55.8 22.3 299 498-817 107-413 (514)
57 PF12719 Cnd3: Nuclear condens 96.6 0.11 2.5E-06 56.9 18.7 176 456-649 23-208 (298)
58 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.0091 2E-07 52.7 7.3 92 432-528 2-95 (97)
59 COG5181 HSH155 U2 snRNP splice 96.3 1.3 2.8E-05 50.8 23.8 191 386-592 297-493 (975)
60 PF12717 Cnd1: non-SMC mitotic 96.1 0.073 1.6E-06 53.5 12.4 150 431-592 3-157 (178)
61 KOG1058 Vesicle coat complex C 96.0 1.7 3.7E-05 51.2 23.3 82 461-550 100-181 (948)
62 KOG1248 Uncharacterized conser 96.0 6.8 0.00015 49.0 57.8 396 352-778 502-922 (1176)
63 KOG1993 Nuclear transport rece 96.0 5 0.00011 47.8 27.1 233 457-710 523-772 (978)
64 KOG1062 Vesicle coat complex A 96.0 5.3 0.00011 47.7 28.3 105 429-547 83-187 (866)
65 PF08167 RIX1: rRNA processing 95.9 0.098 2.1E-06 51.7 11.8 132 456-588 22-162 (165)
66 PF05918 API5: Apoptosis inhib 95.7 3.7 8E-05 48.1 25.1 188 472-685 34-226 (556)
67 cd00020 ARM Armadillo/beta-cat 95.7 0.014 3E-07 54.1 4.7 98 429-528 20-119 (120)
68 KOG1058 Vesicle coat complex C 95.6 1.6 3.4E-05 51.4 21.1 189 368-597 110-329 (948)
69 KOG1061 Vesicle coat complex A 95.4 3.8 8.2E-05 48.8 23.8 149 428-588 98-246 (734)
70 KOG1992 Nuclear export recepto 95.4 8.8 0.00019 46.1 53.3 185 465-668 503-710 (960)
71 KOG1240 Protein kinase contain 95.4 1.2 2.6E-05 55.2 20.0 56 475-531 438-493 (1431)
72 KOG1062 Vesicle coat complex A 95.3 9.1 0.0002 45.9 29.5 91 429-531 120-210 (866)
73 PF12348 CLASP_N: CLASP N term 95.2 0.36 7.8E-06 50.8 14.1 166 382-558 19-192 (228)
74 COG5064 SRP1 Karyopherin (impo 95.1 0.14 3.1E-06 54.0 10.1 119 429-554 170-296 (526)
75 PF12348 CLASP_N: CLASP N term 95.1 1 2.2E-05 47.3 17.1 102 428-531 19-125 (228)
76 PF14500 MMS19_N: Dos2-interac 94.9 0.75 1.6E-05 49.1 15.3 236 465-730 4-256 (262)
77 KOG1240 Protein kinase contain 94.8 0.49 1.1E-05 58.3 14.7 234 385-669 438-687 (1431)
78 PF02985 HEAT: HEAT repeat; I 94.7 0.03 6.5E-07 37.8 2.7 30 501-530 1-30 (31)
79 KOG2022 Nuclear transport rece 94.7 14 0.00031 44.8 31.8 140 499-652 503-650 (982)
80 PF13513 HEAT_EZ: HEAT-like re 94.5 0.037 7.9E-07 43.3 3.1 55 430-487 1-55 (55)
81 PRK09687 putative lyase; Provi 94.0 0.3 6.5E-06 52.8 9.9 115 384-527 105-219 (280)
82 KOG1060 Vesicle coat complex A 93.8 20 0.00043 43.1 24.1 113 464-587 112-227 (968)
83 PRK09687 putative lyase; Provi 93.7 0.43 9.4E-06 51.6 10.6 151 384-569 68-218 (280)
84 KOG0168 Putative ubiquitin fus 93.6 22 0.00047 43.1 25.2 78 498-576 209-291 (1051)
85 PF04931 DNA_pol_phi: DNA poly 93.4 0.78 1.7E-05 57.6 13.6 14 796-809 545-558 (784)
86 KOG0211 Protein phosphatase 2A 93.3 26 0.00057 43.1 31.5 416 6-530 238-665 (759)
87 PF04826 Arm_2: Armadillo-like 93.1 1.5 3.3E-05 46.4 13.1 183 468-668 20-206 (254)
88 PF10521 DUF2454: Protein of u 92.9 10 0.00023 41.1 19.8 103 429-532 15-151 (282)
89 KOG1077 Vesicle coat complex A 92.9 25 0.00054 41.7 23.8 168 407-587 278-451 (938)
90 cd00020 ARM Armadillo/beta-cat 92.7 0.1 2.3E-06 48.1 3.5 86 467-556 14-104 (120)
91 PF04931 DNA_pol_phi: DNA poly 92.6 0.13 2.8E-06 64.5 5.0 25 92-116 7-31 (784)
92 PF05804 KAP: Kinesin-associat 92.5 2.4 5.3E-05 51.5 15.3 117 432-554 265-383 (708)
93 PF12717 Cnd1: non-SMC mitotic 92.4 6.8 0.00015 39.2 16.3 76 473-556 1-76 (178)
94 PF13646 HEAT_2: HEAT repeats; 92.3 0.26 5.7E-06 42.7 5.3 76 428-525 12-88 (88)
95 PF05004 IFRD: Interferon-rela 92.1 15 0.00032 40.4 19.7 137 388-531 104-259 (309)
96 PF08767 CRM1_C: CRM1 C termin 92.0 23 0.0005 39.2 22.2 120 541-669 73-196 (319)
97 PF13646 HEAT_2: HEAT repeats; 91.8 0.097 2.1E-06 45.5 1.9 49 470-527 10-58 (88)
98 PF08167 RIX1: rRNA processing 91.4 5 0.00011 39.6 13.7 101 220-354 63-163 (165)
99 KOG0946 ER-Golgi vesicle-tethe 90.7 46 0.00099 40.2 40.6 160 385-556 38-221 (970)
100 KOG1020 Sister chromatid cohes 90.7 65 0.0014 42.0 45.5 110 429-547 790-900 (1692)
101 PF12460 MMS19_C: RNAPII trans 90.5 39 0.00085 39.0 32.8 281 388-684 115-412 (415)
102 COG5096 Vesicle coat complex, 89.8 58 0.0012 39.9 26.5 90 429-530 105-196 (757)
103 PF10363 DUF2435: Protein of u 89.4 1.5 3.3E-05 38.2 7.1 72 500-574 3-77 (92)
104 PF10274 ParcG: Parkin co-regu 89.1 1.4 2.9E-05 43.6 7.3 89 498-587 36-130 (183)
105 KOG1943 Beta-tubulin folding c 89.0 72 0.0016 40.0 48.7 137 384-530 355-501 (1133)
106 KOG1832 HIV-1 Vpr-binding prot 89.0 0.17 3.8E-06 59.6 1.3 9 476-484 760-768 (1516)
107 KOG4653 Uncharacterized conser 88.7 18 0.00038 43.9 17.1 184 499-704 726-915 (982)
108 PF12460 MMS19_C: RNAPII trans 88.3 55 0.0012 37.8 27.9 48 503-553 2-52 (415)
109 KOG0943 Predicted ubiquitin-pr 87.7 0.45 9.8E-06 57.7 3.5 14 720-733 1530-1543(3015)
110 KOG1059 Vesicle coat complex A 87.1 76 0.0016 38.0 33.0 286 459-793 108-397 (877)
111 KOG4653 Uncharacterized conser 86.2 19 0.00041 43.7 15.4 140 389-541 787-928 (982)
112 KOG1832 HIV-1 Vpr-binding prot 85.8 0.61 1.3E-05 55.3 3.2 13 317-329 624-636 (1516)
113 PF08506 Cse1: Cse1; InterPro 84.9 74 0.0016 35.9 24.6 236 384-654 110-362 (370)
114 PF12719 Cnd3: Nuclear condens 84.8 32 0.0007 37.6 16.2 146 11-158 34-187 (298)
115 PF01603 B56: Protein phosphat 84.8 13 0.00029 42.7 13.5 258 496-808 105-381 (409)
116 COG5240 SEC21 Vesicle coat com 84.5 88 0.0019 36.4 33.0 65 463-528 490-554 (898)
117 PRK13800 putative oxidoreducta 83.9 4.5 9.8E-05 51.8 10.2 78 429-527 788-865 (897)
118 KOG2549 Transcription initiati 83.4 7.3 0.00016 44.7 10.1 106 317-446 262-371 (576)
119 KOG2956 CLIP-associating prote 83.4 59 0.0013 36.9 16.8 209 360-585 272-494 (516)
120 COG5064 SRP1 Karyopherin (impo 83.0 0.96 2.1E-05 48.0 3.0 123 430-557 299-428 (526)
121 PF14500 MMS19_N: Dos2-interac 82.2 76 0.0016 33.9 17.9 220 428-667 11-237 (262)
122 PF05536 Neurochondrin: Neuroc 81.9 1.2E+02 0.0026 36.4 20.2 153 639-796 99-260 (543)
123 PF01603 B56: Protein phosphat 81.2 1.1E+02 0.0023 35.3 19.1 160 387-556 150-310 (409)
124 KOG4224 Armadillo repeat prote 81.0 17 0.00038 39.4 11.2 65 466-531 214-282 (550)
125 PF10521 DUF2454: Protein of u 80.7 23 0.00049 38.5 12.8 101 428-530 87-204 (282)
126 PF04826 Arm_2: Armadillo-like 80.7 23 0.00049 37.7 12.3 132 429-568 26-159 (254)
127 PF05804 KAP: Kinesin-associat 80.1 1.6E+02 0.0034 36.3 22.3 214 429-666 344-563 (708)
128 PF03224 V-ATPase_H_N: V-ATPas 79.6 88 0.0019 34.5 17.3 165 34-209 53-227 (312)
129 PF05004 IFRD: Interferon-rela 79.4 1E+02 0.0023 33.8 20.7 162 498-668 41-216 (309)
130 KOG2051 Nonsense-mediated mRNA 79.1 1.9E+02 0.0041 36.6 28.7 36 30-66 31-66 (1128)
131 KOG0414 Chromosome condensatio 78.2 2.1E+02 0.0045 36.7 33.8 160 385-553 290-453 (1251)
132 PF08064 UME: UME (NUC010) dom 78.1 3.9 8.3E-05 37.0 4.8 76 474-553 29-106 (107)
133 KOG0414 Chromosome condensatio 78.1 28 0.0006 43.9 13.2 136 390-543 897-1039(1251)
134 KOG1078 Vesicle coat complex C 77.2 1.8E+02 0.004 35.4 28.8 129 383-530 405-533 (865)
135 KOG1967 DNA repair/transcripti 76.9 13 0.00029 45.2 9.9 140 635-779 864-1007(1030)
136 KOG2160 Armadillo/beta-catenin 76.8 84 0.0018 34.5 15.1 101 429-532 96-199 (342)
137 PF11865 DUF3385: Domain of un 76.4 25 0.00055 34.4 10.4 127 407-557 9-142 (160)
138 PF10363 DUF2435: Protein of u 76.2 10 0.00022 33.1 6.7 67 465-531 8-74 (92)
139 cd08050 TAF6 TATA Binding Prot 75.7 20 0.00043 40.1 10.6 123 293-445 211-340 (343)
140 PF08161 NUC173: NUC173 domain 75.3 27 0.00059 35.5 10.6 94 558-666 18-126 (198)
141 PF03224 V-ATPase_H_N: V-ATPas 75.1 1.1E+02 0.0025 33.6 16.5 126 402-552 70-200 (312)
142 PF11705 RNA_pol_3_Rpc31: DNA- 74.2 3.1 6.6E-05 43.7 3.6 8 925-932 206-214 (233)
143 PF00514 Arm: Armadillo/beta-c 74.1 3.8 8.3E-05 29.5 3.0 29 500-528 12-40 (41)
144 PF08767 CRM1_C: CRM1 C termin 73.6 1.5E+02 0.0033 32.8 20.4 137 139-307 88-225 (319)
145 KOG2933 Uncharacterized conser 72.6 23 0.00049 37.9 9.3 135 384-531 102-236 (334)
146 KOG0392 SNF2 family DNA-depend 72.6 23 0.0005 44.8 10.6 171 387-571 750-927 (1549)
147 KOG2956 CLIP-associating prote 72.2 23 0.0005 40.0 9.6 155 383-553 343-500 (516)
148 KOG1061 Vesicle coat complex A 71.6 52 0.0011 39.7 12.9 101 460-569 86-186 (734)
149 KOG1525 Sister chromatid cohes 70.9 3.5E+02 0.0075 35.8 21.7 82 723-808 181-262 (1266)
150 PF02985 HEAT: HEAT repeat; I 69.8 12 0.00026 25.0 4.5 28 91-118 3-30 (31)
151 PF05918 API5: Apoptosis inhib 69.2 79 0.0017 37.5 13.7 57 472-531 71-127 (556)
152 PF13251 DUF4042: Domain of un 69.0 1.3E+02 0.0028 30.1 14.4 122 509-669 49-176 (182)
153 PF12054 DUF3535: Domain of un 68.9 1.4E+02 0.0031 34.7 15.8 98 429-531 100-199 (441)
154 PF04510 DUF577: Family of unk 68.6 1E+02 0.0022 30.2 12.0 50 88-137 3-57 (174)
155 KOG0211 Protein phosphatase 2A 67.5 3.2E+02 0.0069 34.0 26.1 167 365-546 274-444 (759)
156 PF05536 Neurochondrin: Neuroc 67.0 2.8E+02 0.0061 33.2 26.1 167 580-760 94-266 (543)
157 PF08064 UME: UME (NUC010) dom 66.7 29 0.00063 31.3 7.7 88 720-809 7-96 (107)
158 smart00802 UME Domain in UVSB 66.1 25 0.00053 31.8 7.0 87 720-808 7-95 (107)
159 PF07571 DUF1546: Protein of u 65.4 15 0.00033 32.1 5.5 58 382-445 18-78 (92)
160 smart00802 UME Domain in UVSB 64.1 70 0.0015 28.9 9.5 87 498-586 9-101 (107)
161 PF12231 Rif1_N: Rap1-interact 63.7 2.6E+02 0.0057 31.7 25.8 244 406-668 37-304 (372)
162 COG5116 RPN2 26S proteasome re 63.4 21 0.00046 41.0 7.3 109 431-556 567-675 (926)
163 KOG1967 DNA repair/transcripti 61.6 52 0.0011 40.5 10.4 92 496-589 905-1003(1030)
164 PF10274 ParcG: Parkin co-regu 61.4 67 0.0015 32.0 9.6 72 614-687 58-129 (183)
165 PF14911 MMS22L_C: S-phase gen 59.3 3E+02 0.0066 31.0 18.6 204 453-669 66-289 (373)
166 KOG2062 26S proteasome regulat 59.2 92 0.002 37.5 11.5 110 431-557 570-679 (929)
167 KOG4535 HEAT and armadillo rep 59.0 36 0.00078 38.5 7.9 120 429-552 497-622 (728)
168 PF08389 Xpo1: Exportin 1-like 56.5 74 0.0016 30.2 9.3 47 474-524 100-148 (148)
169 PF04821 TIMELESS: Timeless pr 56.4 2.8E+02 0.0061 29.7 14.7 152 636-796 43-207 (266)
170 PF13925 Katanin_con80: con80 56.0 53 0.0012 32.3 8.1 49 107-155 45-101 (164)
171 cd00256 VATPase_H VATPase_H, r 55.2 3.8E+02 0.0083 30.9 24.7 283 35-372 52-347 (429)
172 PF11865 DUF3385: Domain of un 54.3 1.1E+02 0.0024 30.0 9.9 52 612-666 105-156 (160)
173 PF08569 Mo25: Mo25-like; Int 53.9 3.2E+02 0.007 30.4 14.5 151 36-208 76-237 (335)
174 KOG4524 Uncharacterized conser 53.4 5.7E+02 0.012 32.3 20.8 106 481-586 569-679 (1014)
175 PLN03076 ARF guanine nucleotid 52.4 8.3E+02 0.018 33.9 43.5 218 51-301 1150-1402(1780)
176 PF12612 TFCD_C: Tubulin foldi 52.4 1.3E+02 0.0028 30.5 10.5 34 497-530 4-37 (193)
177 COG5218 YCG1 Chromosome conden 52.2 2.9E+02 0.0064 32.5 13.7 73 457-531 89-163 (885)
178 PRK13800 putative oxidoreducta 51.6 1.3E+02 0.0028 38.8 12.7 77 429-526 820-896 (897)
179 KOG2025 Chromosome condensatio 50.5 5.5E+02 0.012 31.3 24.3 73 459-531 84-157 (892)
180 PF10350 DUF2428: Putative dea 50.1 3.3E+02 0.0072 28.9 13.7 120 431-551 112-248 (255)
181 PF09026 CENP-B_dimeris: Centr 50.0 5.4 0.00012 34.2 0.0 13 964-976 41-54 (101)
182 TIGR02270 conserved hypothetic 49.7 68 0.0015 36.8 8.7 76 429-527 130-205 (410)
183 PF04118 Dopey_N: Dopey, N-ter 48.8 4E+02 0.0087 29.2 14.7 95 613-707 27-126 (307)
184 KOG3961 Uncharacterized conser 48.0 1.4E+02 0.0031 30.2 9.3 88 498-587 112-205 (262)
185 PF08569 Mo25: Mo25-like; Int 47.8 97 0.0021 34.4 9.3 78 456-535 206-289 (335)
186 KOG1077 Vesicle coat complex A 47.3 6E+02 0.013 30.9 30.3 61 91-154 114-179 (938)
187 COG5656 SXM1 Importin, protein 45.9 6.5E+02 0.014 30.8 50.6 159 606-774 428-587 (970)
188 PF01465 GRIP: GRIP domain; I 44.5 44 0.00096 24.9 4.1 36 84-119 3-38 (46)
189 KOG1851 Uncharacterized conser 44.4 3E+02 0.0064 36.6 13.5 150 34-206 1524-1678(1710)
190 smart00185 ARM Armadillo/beta- 44.2 18 0.00038 25.6 2.0 28 501-528 13-40 (41)
191 KOG2160 Armadillo/beta-catenin 44.1 1.6E+02 0.0035 32.4 10.0 112 731-858 88-200 (342)
192 PF12231 Rif1_N: Rap1-interact 43.7 5.3E+02 0.012 29.2 25.2 276 475-799 61-354 (372)
193 KOG3036 Protein involved in ce 43.6 3.5E+02 0.0075 28.4 11.4 64 779-856 136-199 (293)
194 PF04388 Hamartin: Hamartin pr 41.7 5.5E+02 0.012 31.7 15.3 133 502-666 6-139 (668)
195 PF04118 Dopey_N: Dopey, N-ter 41.2 5.2E+02 0.011 28.4 17.6 34 101-134 2-35 (307)
196 PF13001 Ecm29: Proteasome sta 40.6 6.9E+02 0.015 29.6 29.4 83 6-100 25-114 (501)
197 PF10487 Nup188: Nucleoporin s 40.2 4.8E+02 0.01 33.6 14.9 118 720-856 545-670 (931)
198 PF04078 Rcd1: Cell differenti 40.2 1.7E+02 0.0038 30.9 9.1 161 409-595 40-218 (262)
199 COG5098 Chromosome condensatio 40.0 7.6E+02 0.017 30.0 21.8 137 384-531 277-417 (1128)
200 KOG2062 26S proteasome regulat 39.6 3.1E+02 0.0067 33.4 11.8 54 471-531 566-620 (929)
201 KOG2032 Uncharacterized conser 39.6 6.7E+02 0.014 29.2 16.7 91 496-588 254-349 (533)
202 PF00514 Arm: Armadillo/beta-c 39.3 88 0.0019 22.2 5.0 26 92-117 16-41 (41)
203 KOG2759 Vacuolar H+-ATPase V1 39.2 6.3E+02 0.014 28.7 24.3 120 389-532 65-189 (442)
204 PF13817 DDE_Tnp_IS66_C: IS66 38.9 33 0.00071 24.5 2.6 28 966-993 8-35 (39)
205 KOG2549 Transcription initiati 38.6 4.8E+02 0.01 30.7 12.9 142 498-652 205-353 (576)
206 smart00755 Grip golgin-97, Ran 38.5 56 0.0012 24.4 3.8 34 85-119 3-36 (46)
207 PF04078 Rcd1: Cell differenti 37.1 5.4E+02 0.012 27.4 12.1 63 780-856 108-170 (262)
208 KOG1820 Microtubule-associated 36.7 2.7E+02 0.0058 35.0 11.4 134 384-531 309-445 (815)
209 KOG0889 Histone acetyltransfer 36.0 1.7E+03 0.038 33.0 44.4 256 428-686 1045-1327(3550)
210 KOG0168 Putative ubiquitin fus 35.7 9.7E+02 0.021 29.9 18.0 162 636-806 209-376 (1051)
211 PF14225 MOR2-PAG1_C: Cell mor 35.2 5.9E+02 0.013 27.2 14.0 143 498-669 109-256 (262)
212 PF14911 MMS22L_C: S-phase gen 34.9 3.9E+02 0.0085 30.1 11.4 111 472-587 224-347 (373)
213 PF14668 RICTOR_V: Rapamycin-i 34.5 1E+02 0.0022 25.7 5.1 55 432-489 3-58 (73)
214 smart00567 EZ_HEAT E-Z type HE 34.4 53 0.0012 21.5 3.0 14 475-488 2-15 (30)
215 KOG2213 Apoptosis inhibitor 5/ 34.3 7.2E+02 0.016 28.0 18.4 52 476-530 40-91 (460)
216 PF07571 DUF1546: Protein of u 33.7 1.3E+02 0.0029 26.2 6.2 50 102-152 20-78 (92)
217 PF11698 V-ATPase_H_C: V-ATPas 33.6 35 0.00075 31.3 2.5 59 472-530 56-116 (119)
218 PF05327 RRN3: RNA polymerase 32.5 7.9E+02 0.017 29.7 14.6 24 865-888 199-222 (563)
219 KOG0567 HEAT repeat-containing 31.7 1.4E+02 0.0031 31.5 6.7 50 471-529 231-280 (289)
220 smart00288 VHS Domain present 31.6 4.3E+02 0.0093 24.8 9.8 37 496-532 33-69 (133)
221 KOG1525 Sister chromatid cohes 31.3 1.4E+03 0.031 30.5 24.0 59 743-802 276-334 (1266)
222 PF12830 Nipped-B_C: Sister ch 31.2 2E+02 0.0043 29.0 7.9 67 462-531 10-76 (187)
223 KOG0889 Histone acetyltransfer 30.5 2.1E+03 0.045 32.2 24.5 90 483-572 30-126 (3550)
224 PF02084 Bindin: Bindin; Inte 29.9 4.2E+02 0.009 27.1 9.4 40 965-1010 121-161 (238)
225 PF08713 DNA_alkylation: DNA a 29.3 2.1E+02 0.0046 29.2 8.1 129 386-543 67-196 (213)
226 KOG4224 Armadillo repeat prote 29.2 88 0.0019 34.3 5.0 87 471-557 178-265 (550)
227 smart00638 LPD_N Lipoprotein N 28.9 3.8E+02 0.0081 32.5 11.3 94 429-531 410-511 (574)
228 PF14225 MOR2-PAG1_C: Cell mor 28.8 5.5E+02 0.012 27.4 11.0 109 456-573 150-258 (262)
229 KOG1078 Vesicle coat complex C 28.6 1.2E+03 0.026 28.9 20.8 212 499-736 281-515 (865)
230 PF04388 Hamartin: Hamartin pr 28.6 96 0.0021 38.2 6.0 77 475-553 83-162 (668)
231 PF05327 RRN3: RNA polymerase 28.6 8E+02 0.017 29.6 13.7 31 848-879 187-217 (563)
232 COG5657 CSE1 CAS/CSE protein i 28.5 1.3E+03 0.028 29.1 16.6 57 496-554 529-586 (947)
233 PF05285 SDA1: SDA1; InterPro 28.2 76 0.0017 35.1 4.6 15 996-1010 189-203 (324)
234 PF11698 V-ATPase_H_C: V-ATPas 27.5 1.5E+02 0.0033 27.3 5.6 75 37-120 44-118 (119)
235 PF14664 RICTOR_N: Rapamycin-i 27.0 9.5E+02 0.021 27.2 13.1 150 498-666 23-175 (371)
236 KOG3241 Uncharacterized conser 26.7 47 0.001 32.0 2.2 10 840-849 131-140 (227)
237 KOG2025 Chromosome condensatio 26.6 4.8E+02 0.011 31.7 10.6 90 429-524 98-188 (892)
238 KOG2038 CAATT-binding transcri 26.5 63 0.0014 38.9 3.6 69 889-970 877-945 (988)
239 PF02194 PXA: PXA domain; Int 26.2 6.5E+02 0.014 24.9 11.3 69 49-138 3-72 (185)
240 PF13324 GCIP: Grap2 and cycli 25.9 2.7E+02 0.0058 30.1 8.3 27 860-886 116-142 (275)
241 KOG1048 Neural adherens juncti 25.7 1.8E+02 0.0039 35.4 7.2 201 470-677 243-463 (717)
242 cd08050 TAF6 TATA Binding Prot 25.6 9.3E+02 0.02 26.9 12.7 141 498-649 176-320 (343)
243 KOG4524 Uncharacterized conser 25.2 1.5E+03 0.033 28.8 23.7 106 396-510 574-684 (1014)
244 PF13251 DUF4042: Domain of un 25.0 7.1E+02 0.015 25.0 12.1 143 386-531 2-176 (182)
245 PF12830 Nipped-B_C: Sister ch 24.9 1.8E+02 0.004 29.2 6.4 64 6-71 10-78 (187)
246 KOG1820 Microtubule-associated 24.8 7.3E+02 0.016 31.3 12.4 138 429-574 308-448 (815)
247 cd03572 ENTH_epsin_related ENT 24.6 2.4E+02 0.0052 26.2 6.4 47 485-531 23-69 (122)
248 PF14664 RICTOR_N: Rapamycin-i 24.5 1.1E+03 0.023 26.8 14.0 73 730-804 72-144 (371)
249 PF12765 Cohesin_HEAT: HEAT re 24.4 69 0.0015 23.3 2.3 25 499-523 17-41 (42)
250 COG5116 RPN2 26S proteasome re 24.4 8.5E+02 0.018 28.8 11.6 108 469-588 561-669 (926)
251 PRK02922 glycogen synthesis pr 24.3 3.7E+02 0.008 21.7 6.2 53 966-1018 6-59 (67)
252 KOG2256 Predicted protein invo 24.2 1.3E+03 0.029 27.9 15.6 51 497-548 279-329 (661)
253 cd07064 AlkD_like_1 A new stru 24.2 3.7E+02 0.008 27.6 8.6 129 386-543 62-191 (208)
254 PF04281 Tom22: Mitochondrial 24.2 2.3E+02 0.0051 26.8 6.3 17 1013-1029 115-131 (137)
255 PF08623 TIP120: TATA-binding 24.1 5E+02 0.011 25.7 8.8 100 745-854 46-146 (169)
256 PRK11546 zraP zinc resistance 23.9 1E+02 0.0022 29.4 3.8 33 988-1020 35-67 (143)
257 PF12783 Sec7_N: Guanine nucle 23.5 6.1E+02 0.013 24.7 9.8 63 744-807 91-155 (168)
258 smart00145 PI3Ka Phosphoinosit 23.4 1.3E+02 0.0028 30.2 4.8 59 477-548 61-119 (184)
259 KOG1517 Guanine nucleotide bin 23.3 6.8E+02 0.015 32.1 11.3 178 340-530 529-733 (1387)
260 PF08161 NUC173: NUC173 domain 23.3 1.5E+02 0.0032 30.2 5.3 79 727-808 3-82 (198)
261 PF04147 Nop14: Nop14-like fam 23.1 77 0.0017 40.2 3.9 53 894-961 338-390 (840)
262 KOG3036 Protein involved in ce 23.1 6.9E+02 0.015 26.3 9.7 96 317-443 94-195 (293)
263 PF11841 DUF3361: Domain of un 23.1 7.2E+02 0.016 24.3 11.4 44 627-670 90-134 (160)
264 COG5218 YCG1 Chromosome conden 23.0 3.3E+02 0.0072 32.1 8.2 88 429-521 104-191 (885)
265 KOG2933 Uncharacterized conser 22.9 3.5E+02 0.0075 29.4 7.9 109 429-544 101-213 (334)
266 PF12333 Ipi1_N: Rix1 complex 22.7 2E+02 0.0044 25.6 5.4 55 534-588 2-60 (102)
267 KOG2259 Uncharacterized conser 22.6 1.4E+03 0.031 27.7 13.8 195 476-698 389-586 (823)
268 cd00872 PI3Ka_I Phosphoinositi 22.4 1.3E+02 0.0028 29.8 4.5 59 477-548 56-114 (171)
269 KOG2973 Uncharacterized conser 22.4 1E+03 0.023 25.9 13.4 31 4-34 3-33 (353)
270 PF01347 Vitellogenin_N: Lipop 22.2 1.5E+02 0.0033 36.2 6.3 94 429-531 448-555 (618)
271 smart00638 LPD_N Lipoprotein N 22.1 2.8E+02 0.0062 33.6 8.5 121 386-526 413-542 (574)
272 PF09324 DUF1981: Domain of un 22.0 4.1E+02 0.0089 22.8 7.0 50 99-148 29-84 (86)
273 KOG2032 Uncharacterized conser 21.9 1.3E+03 0.028 26.9 18.2 99 456-557 255-356 (533)
274 PF02724 CDC45: CDC45-like pro 21.3 65 0.0014 39.3 2.6 18 740-757 9-26 (622)
275 KOG2021 Nuclear mRNA export fa 21.3 1.6E+03 0.035 27.8 40.4 70 473-544 206-275 (980)
276 PF03130 HEAT_PBS: PBS lyase H 21.2 50 0.0011 21.2 0.9 14 476-489 1-14 (27)
277 KOG0262 RNA polymerase I, larg 21.0 4.1E+02 0.009 34.3 9.1 12 798-809 1150-1161(1640)
278 KOG2137 Protein kinase [Signal 21.0 1.1E+03 0.024 28.9 12.3 112 397-527 377-494 (700)
279 KOG1517 Guanine nucleotide bin 21.0 4.7E+02 0.01 33.3 9.4 96 430-531 571-673 (1387)
280 KOG0392 SNF2 family DNA-depend 20.5 2E+03 0.043 28.9 14.6 76 475-554 144-219 (1549)
281 KOG4364 Chromatin assembly fac 20.4 2.6E+02 0.0056 33.3 6.8 96 901-1012 518-617 (811)
282 PLN03076 ARF guanine nucleotid 20.1 2.5E+03 0.054 29.6 24.1 130 638-772 1344-1507(1780)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-166 Score=1399.65 Aligned_cols=998 Identities=46% Similarity=0.779 Sum_probs=914.5
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCC-CcCC
Q 001675 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQ 79 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~-~~~~ 79 (1033)
||.+.+.++|.+|+++|++.|+.||++|++++++|||...|++|+.+++++.+|||+|||||||+|.++|+..+. ..+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998642 2456
Q ss_pred CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhcc
Q 001675 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (1033)
Q Consensus 80 ~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~ 156 (1033)
.+++++|+.||++|+..+...|..||.|+..|+..|.+.|||++||++++.+...++++ .++|||.||++++|.|+|
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999998 589999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 001675 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (1033)
Q Consensus 157 ~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l~~~ 236 (1033)
|+.+.|.++..++..+||.+++++.+++..+ +.++.++.++|+|||++++++++|..+.+.+.|..||++|+++++++
T Consensus 161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~--s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rp 238 (1010)
T KOG1991|consen 161 KKDEERQPLGEAVEELFPDILQIFNGLLSQE--SYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRP 238 (1010)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998764 46788999999999999999999999988999999999999999999
Q ss_pred CCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 001675 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (1033)
Q Consensus 237 ~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~d 316 (1033)
+|.++++.|+++|..|+|||||||++++++|+|+|||+|+++.+++++|+++|..++++.+++.+++++..++.+.|+++
T Consensus 239 vP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~ 318 (1010)
T KOG1991|consen 239 VPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSD 318 (1010)
T ss_pred CChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999877889999
Q ss_pred HHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHHH
Q 001675 317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE 396 (1033)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~ 396 (1033)
+++++++.|+..|++.+.+|++++||+..++..+|||.||++++|+|+|++||.||+|+.+|.++|.+||+.||.+++..
T Consensus 319 rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~ 398 (1010)
T KOG1991|consen 319 RVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT 398 (1010)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccc
Q 001675 397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476 (1033)
Q Consensus 397 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~l 476 (1033)
++++||+++++.+++|+.+++++|..++.+..+.|++||||+++|++++.+.+..+|+..++.|+.+||+|+|+++.++|
T Consensus 399 ~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~L 478 (1010)
T KOG1991|consen 399 LVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYL 478 (1010)
T ss_pred HHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHH
Confidence 99999999999999999999999988765567999999999999999999999889999999999999999999999999
Q ss_pred hHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc-ccchhhcchHHHHHHHHHHhhh
Q 001675 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNE 554 (1033)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-d~~~~Vr~~Aa~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~ 554 (1033)
|+||||++++|++..|+++..+.+++..+.++|. |.++|||+.||.||+.|+.++. .++.++|+++++|+.|++++++
T Consensus 479 rarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 479 RARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 8999999999999999999886 5577999999999999999999
Q ss_pred hchhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHH
Q 001675 555 VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ 634 (1033)
Q Consensus 555 ~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~ 634 (1033)
+++|.+..+|+++|..|+++++||+.+++++|..+|++++.+.+++.+.++++.+.++|+++||++|+.+++++|+++.+
T Consensus 559 ~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 559 VENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred cchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999998755555566789999999999999999999999999999
Q ss_pred HHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCccccc
Q 001675 635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL 714 (1033)
Q Consensus 635 l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l 714 (1033)
+++.++|++.++|.++..+|+++++++..++++.++.+||.||+++|.+++++.+++.+|++++++.|+||+.+|...++
T Consensus 639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~ 718 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL 718 (1010)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Q 001675 715 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIA 793 (1033)
Q Consensus 715 ~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~-~~~~~~~~~~l~v~~ 793 (1033)
++|.|++.++.++++++.++..+++|+..||+|++.++++|+|.+++|+|.+++.++.|+.. .++..++..++.|++
T Consensus 719 --s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvi 796 (1010)
T KOG1991|consen 719 --SNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVI 796 (1010)
T ss_pred --ccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 78899999999999999988888999999999999999999999999999999999999987 789999999999999
Q ss_pred HHhhhChHHHHHHHHhhCchHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcc-ccCCCChhhHHHHHHHH
Q 001675 794 DALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL-TADQLPGEALGRVFRAT 872 (1033)
Q Consensus 794 ~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~-~~~~l~~~~~~~~~~~~ 872 (1033)
++++|||..++++|+..|++..||..|++... .+.+.||||+|++||++|++. +.+++|....+++++++
T Consensus 797 nalyynP~ltL~iLe~~~~~~~ff~~wf~~~~---------~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~l 867 (1010)
T KOG1991|consen 797 NALYYNPKLTLGILENQGFLNNFFTLWFQFIN---------QFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPAL 867 (1010)
T ss_pred HHHHcCcHHHHHHHHHcCCcccHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999 888899999999999999999 45667766778999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCC
Q 001675 873 LDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDS 952 (1033)
Q Consensus 873 ~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 952 (1033)
+.++.+||++++++++..++.++++ +++ ++++|++..++ ++|+++ .+++|.+.+..-+....+..+++||+
T Consensus 868 v~L~~~Lp~ala~ra~~~ee~~~e~---~~~--~~~~~e~~~~d-~dD~d~---~d~d~~~~~~~~~~~~~~~~~~ddd~ 938 (1010)
T KOG1991|consen 868 VELLLSLPEALAERAQVEEEDSEEG---EEE--DDDEEEDFIDD-EDDIDE---DDQDYLDEYGELALEKEDSLDDDDDF 938 (1010)
T ss_pred HHHHHHHHHHHHHHHHhhccccccc---cCC--CCcchhhccCc-cccccc---cchhHHHhhccccccccccccccccc
Confidence 9999999999999987554321111 111 11111111111 111111 11233444433211111112222222
Q ss_pred -CC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHHHHHHHhHHHHH
Q 001675 953 -DD--DFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIE 1020 (1033)
Q Consensus 953 -~~--~~~dd~~~~~pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~ 1020 (1033)
+| +.+||+.++||||+||+|.+|+++++.++.+++++|+.|+++|++++|+.||.+++++++||++++
T Consensus 939 d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~yq~l~~~L~~~q~~~lq~I~~~~~~r~a~~~ 1009 (1010)
T KOG1991|consen 939 DEDELDLEEDELFETPLDQVDPFQLFKEAITNLQSSDAVRYQKLISTLTPEQQDSLQTILTHAEQRRAVAE 1009 (1010)
T ss_pred cchhccccccccccCcccccchHHHHHHHHHhhhccChHHHHHHHhcCCHHHHHHHHHHHHhHHHHHHHhc
Confidence 22 446789999999999999999999999999999999999999999999999999999999998764
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-123 Score=1012.76 Aligned_cols=954 Identities=24% Similarity=0.417 Sum_probs=847.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCC-CcCCCC
Q 001675 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQKI 81 (1033)
Q Consensus 3 ~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~-~~~~~l 81 (1033)
.+++.||+.+|+++|+++|+.||++|++++++|||..+|++|..+++.++++|++|||||||+|.+.|+...+ ...+-.
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~De 81 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADE 81 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcc
Confidence 4789999999999999999999999999999999999999999998899999999999999999999997322 112224
Q ss_pred ChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhccC
Q 001675 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFK 157 (1033)
Q Consensus 82 ~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~ 157 (1033)
+.+.|..++++++.....+|...|+.+..++..|...||| +.|| +.|...+++.++ .++.||.|+.+++|.||||
T Consensus 82 k~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRwk 160 (970)
T COG5656 82 KSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRWK 160 (970)
T ss_pred cHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhhh
Confidence 4445555555555555678899999999999999999999 8899 999999999988 6899999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCC
Q 001675 158 SDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV 237 (1033)
Q Consensus 158 ~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l~~~~ 237 (1033)
.++.|..+..++.++||.+.++.+.+.+.+ +....+++++++|+|++.+++++|.++...+.+..|+++++.+++.+.
T Consensus 161 ~ndeq~di~~li~alfpile~~g~nl~s~~--ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 161 YNDEQVDILMLITALFPILEKVGGNLESQG--NYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred ccchHhhHHHHHHHhhHHHHHHhhccccCC--chhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 887777888999999999999999887643 356789999999999999999999999888999999999999999999
Q ss_pred CCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhC-CcccCH
Q 001675 238 PSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRV-GGYLPD 316 (1033)
Q Consensus 238 p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~-~~~~~d 316 (1033)
|.+.+..|++.|+.++|.|||||++.+++|+++||+++.+.. .+..|...|.. ..|.|++.+++.+..+.+ ..|++|
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~-~y~~f~~~f~t-~vp~il~tffkqie~wgqgqLWlsd 316 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKK-SYLSFYITFMT-RVPMILATFFKQIEEWGQGQLWLSD 316 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCeecch
Confidence 988888899999999999999999999999999999876532 56678888876 889999999999998765 469999
Q ss_pred HHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHHH
Q 001675 317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE 396 (1033)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~ 396 (1033)
..++.+..|+..|+..+.+|++++||+.-++.++|||.+|++++++|.||+||+||+|+.+|.+++.+++..||..++..
T Consensus 317 ~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~ 396 (970)
T COG5656 317 IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLII 396 (970)
T ss_pred HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccc
Q 001675 397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476 (1033)
Q Consensus 397 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~l 476 (1033)
+..++++.+++.+++|+..+|+++.++|.+.+|.++.|||+++++++...+++.++....++.|+.+||.|.++++++||
T Consensus 397 ~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL 476 (970)
T COG5656 397 SKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFL 476 (970)
T ss_pred HhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccch
Confidence 99999999999999999999999988887777999999999999999997777777788899999999999999999999
Q ss_pred hHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhc
Q 001675 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 556 (1033)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 556 (1033)
|+|||.++++| +..|++...+.++|+.+.+||++.++||++.||.|++.|+.+.+.++.++.|+|.+|+.|+.+.++++
T Consensus 477 ~Srace~is~~-eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fe 555 (970)
T COG5656 477 KSRACEFISTI-EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFE 555 (970)
T ss_pred HHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccccc
Confidence 99999999999 56888988899999999999999999999999999999999888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCC----CCChhHHHHHHHHHHHHHHHHhccCChHHH
Q 001675 557 NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADED----ADDPGALAAVGCLRAISTILESVSRLPHLF 632 (1033)
Q Consensus 557 ~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~----~~~~~~~~~~~~l~~i~~li~~~~~~~~~~ 632 (1033)
.+.+..+|+++|+.|++++.||+++|+..|+++|+++..+--++++ .-|++.+.+.|+++|+++++.++++.|.++
T Consensus 556 iD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vL 635 (970)
T COG5656 556 IDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVL 635 (970)
T ss_pred chHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 9999999999999999999999999999999999998754322221 135799999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHhhhhH-hhhhhhhhhhhhhhhccCcc
Q 001675 633 VQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWA-IDFFPNILVPLDNYISRGTA 711 (1033)
Q Consensus 633 ~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~-~~~~~~~~~~L~~~i~~~~~ 711 (1033)
..++..++|++..++.++..+|+.++++++...++.++.++|.+|.+|+.+.++..+.+ .+|+.+....++||+.+|..
T Consensus 636 k~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 636 KYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999986655 48999999999999999999
Q ss_pred cccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC-chhchHHHHHHHHHHHHh-hhhhHHHHHHH
Q 001675 712 HFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRR-AEKSYLKCLLV 789 (1033)
Q Consensus 712 ~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~-~~~~l~~il~~~~~~l~~-~~~~~~~~~~l 789 (1033)
+|. +++.|+..++.|.++.+.++.+..+|...+|++++.+++++++. .++|+|-++..+-..+.. .+.+......+
T Consensus 716 ef~--~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~al 793 (970)
T COG5656 716 EFM--DAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYAL 793 (970)
T ss_pred ccc--cccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhHH
Confidence 998 67789999999999999877655577899999999999999986 678999888877766654 45667888889
Q ss_pred HHHHHHhhhChHHHHHHHHhhCchHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcccc-CCCChhhHHHH
Q 001675 790 QVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTA-DQLPGEALGRV 868 (1033)
Q Consensus 790 ~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~~-~~l~~~~~~~~ 868 (1033)
.++.++++++|-.++++|+..|++..||..|++..+ +|+|+||||++++|+.+++..+. +.+++..|+++
T Consensus 794 eliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ip---------kfkrvhdkKLsvlaIltii~l~~v~~~~e~lv~nL 864 (970)
T COG5656 794 ELIINNLILRPKETLQILEEQGYLQSFFEKWFSQIP---------KFKRVHDKKLSVLAILTIIRLQEVGALPELLVHNL 864 (970)
T ss_pred HHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhcCc---------chhhhhhhHhHHHHHHHHHHhcccccchhhhhhHH
Confidence 999999999999999999999999999999999999 99999999999999999999873 33444589999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCC
Q 001675 869 FRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDED 948 (1033)
Q Consensus 869 ~~~~~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 948 (1033)
...++.+...||+|++.|+|+.+++ ++.+ +| ...+ +++-.|+++.
T Consensus 865 g~vlv~l~~sLPeAir~rake~d~e------~f~e---~d----lt~e---y~e~vD~~D~------------------- 909 (970)
T COG5656 865 GEVLVALVTSLPEAIRLRAKEKDDE------DFPE---PD----LTTE---YDECVDASDI------------------- 909 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHhhcccC------CCCC---cc----cchh---hhccccccch-------------------
Confidence 9999999999999999998655322 1110 00 0000 0000011110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHHH
Q 001675 949 DDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQ 1010 (1033)
Q Consensus 949 ~~~~~~~~~dd~~~~~pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~ 1010 (1033)
-+. ..+|||+.++|-||+||+|.+|+.++..++..++.+|+.++++|++++|..||.+++
T Consensus 910 -~et-fileEDplfeT~LDqvdpf~~f~ef~~nLq~~s~~~yekIi~~Lt~s~qdslq~iln 969 (970)
T COG5656 910 -SET-FILEEDPLFETELDQVDPFGYFSEFLSNLQPASGTYYEKIISTLTDSQQDSLQTILN 969 (970)
T ss_pred -hhh-hhhcccchhhhhhhhcchHHHHHHHHHhCCCCCchhHHHHHHhcCHHHHHHHHHHhc
Confidence 000 125778999999999999999999999999999999999999999999999999885
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-102 Score=860.34 Aligned_cols=906 Identities=20% Similarity=0.344 Sum_probs=767.7
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCC
Q 001675 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1033)
Q Consensus 2 d~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l 81 (1033)
|++.|.++|++|++|||++||.||..|++++.++||...+++++.+.+.|..+|.+|+++|||+|||+|.+..+. +..+
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~-~~~i 81 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS-PIKI 81 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC-cccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999987653 5679
Q ss_pred ChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhcc--
Q 001675 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF-- 156 (1033)
Q Consensus 82 ~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~-- 156 (1033)
++++|..||..++.+|.+++..|+.|++++++.|+++|||+.||+|+|+++..++++ .+.|.|.+.+.++|+||+
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ef 161 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEF 161 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999999999999999999988 568899999999999985
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHhhcc---CCCh----hHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 001675 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIV---NPSL----EVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229 (1033)
Q Consensus 157 ~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~---~~~~----~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~ 229 (1033)
|+++.+.++..++..+..++..+|.+..... .++. ....++.+++|+|++++.+++|++|+ +++..||+.|
T Consensus 162 rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFE--dnm~~wM~~F 239 (960)
T KOG1992|consen 162 RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFE--DNMKTWMGAF 239 (960)
T ss_pred ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHH--hhHHHHHHHH
Confidence 7888899999999988888999887765321 1121 24567889999999999999999997 8999999999
Q ss_pred HHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 001675 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309 (1033)
Q Consensus 230 ~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~ 309 (1033)
+..++...|.. .+|++ +...+.++|..+|++++.+.+||.+ ++ ..|+|.|++.+|+++...+
T Consensus 240 ~k~l~~~~p~l--e~~~e--e~~~l~~lka~ICEi~~LY~~kYeE------ef--------~~fl~~fv~~~W~LL~~~s 301 (960)
T KOG1992|consen 240 HKLLTYDNPLL--ESDEE--EATVLDKLKAQICEIFNLYATKYEE------EF--------QPFLPDFVTATWNLLVSTS 301 (960)
T ss_pred HHHHhccCccc--ccCcc--cccHHHHHHHHHHHHHHHHHHhhHH------HH--------HhhHHHHHHHHHHHHHhcC
Confidence 99999988842 23333 3455689999999999999999854 32 3478999999999998855
Q ss_pred CCcccCHHHHHHHHHHHHhhcCChhhhhhh--hhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHH
Q 001675 310 VGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 387 (1033)
Q Consensus 310 ~~~~~~d~~~~~~l~fl~~~~~~~~~~~~~--~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R 387 (1033)
+. ...|.+++.++.||+.+++.+.+..++ ...+.+|+..+++|+++++++|+|+|||||.||+|++.++ .|.+|+|
T Consensus 302 ~~-~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEG-sDvdTRR 379 (960)
T KOG1992|consen 302 PD-TKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEG-SDVDTRR 379 (960)
T ss_pred CC-ccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhccc-CCcchhH
Confidence 43 345899999999999998887666566 4578999999999999999999999999999999999996 4789999
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhh-------cCCcchhHHHHH
Q 001675 388 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK-------QTEPYKSELERM 460 (1033)
Q Consensus 388 ~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~-------~~~~~~~~l~~~ 460 (1033)
++|+++++.|++++...+++.+...++..+++|..+|.. ||+.||.+++++.+++..-. ..++ ..++..|
T Consensus 380 R~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~--nWk~kd~aiyL~talaik~~t~~~Gvtstn~-lvdv~~F 456 (960)
T KOG1992|consen 380 RAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSG--NWKKKDRAIYLVTALAIKGQTAKHGVTSTNE-LVDVVDF 456 (960)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCc--cccccchhhhhhHHHHhhcchhhcceeeccc-cccHHHH
Confidence 999999999999999899999999999999999999875 99999999999999997632 2333 2478899
Q ss_pred HHHhhcccCCC----CcccchHHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-
Q 001675 461 LVQHVFPEFSS----PVGHLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR- 532 (1033)
Q Consensus 461 l~~~v~p~l~~----~~~~lr~ra~~~l~~~~~~~~~~~---~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~- 532 (1033)
+.++++|+|.+ ++|+||+.+++++ +.|+++ +.+..+++.++.+|..+..+|..|||.|++.++..++
T Consensus 457 f~~~ilp~L~s~~vn~~pilka~aIKy~-----~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 457 FANQILPDLLSPNVNEFPILKADAIKYI-----YTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred HHHHhhHHhccCccccccchhhccccee-----eeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 99999999986 4899999999999 666665 7899999999999999999999999999999987663
Q ss_pred ------ccchhhcchHHHHHHHHHHhhhhc---hhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCC
Q 001675 533 ------DLNEIRPILPQLLDEFFKLMNEVE---NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDA 603 (1033)
Q Consensus 533 ------~~~~l~p~l~~il~~L~~ll~~~~---~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~ 603 (1033)
.++.+.||+..++..|++.++..+ ++.++.++..++....+.+.|+++.++.+|.+.++.+.++ |
T Consensus 532 ~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KN----P-- 605 (960)
T KOG1992|consen 532 SNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKN----P-- 605 (960)
T ss_pred ccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcC----C--
Confidence 467899999999999998876544 4445555555555567889999999999999977766654 4
Q ss_pred CChhHHHHHHHHHHHHHHHHhcc-CChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcC-CCCCHhHHHHHH
Q 001675 604 DDPGALAAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWP 681 (1033)
Q Consensus 604 ~~~~~~~~~~~l~~i~~li~~~~-~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~-~~isp~l~~l~~ 681 (1033)
.++.+.|+++|+++.+++..+ .+|....+++..++|+++.||.+|..+|++++|++++.++..+ +++++.+|.+||
T Consensus 606 --s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~ 683 (960)
T KOG1992|consen 606 --SNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFP 683 (960)
T ss_pred --CCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 357899999999999999974 6788899999999999999999999999999999999999876 468889999999
Q ss_pred HHHHHhhhhH-hhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc-
Q 001675 682 LMMEALADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG- 759 (1033)
Q Consensus 682 ~l~~~~~~~~-~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~- 759 (1033)
.++.-- -|+ .++++.++++|.+|+..|+..+.+. +.+..|++++++++.++.++.. |+.|+..|+.+++.
T Consensus 684 ~lLsp~-lW~r~gNipalvrLl~aflk~g~~~~~~~---~~l~~iLGifqkLiaSka~Dh~----GF~LLn~i~~~~~~~ 755 (960)
T KOG1992|consen 684 PLLSPN-LWKRSGNIPALVRLLQAFLKTGSQIVEAA---DKLSGILGIFQKLIASKANDHH----GFYLLNTIIESIPPN 755 (960)
T ss_pred HhcCHH-HHhhcCCcHHHHHHHHHHHhcCchhhccc---ccchhHHHHHHHHhcCcccchh----HHHHHHHHHhcCCHh
Confidence 887652 355 6799999999999999999988743 5689999999999999988876 99999999999875
Q ss_pred CchhchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhChHHHHHHHHhh--CchHHHH-HHHHHHHHHHHhhccccc
Q 001675 760 QVDHWVEPYLRITVERLRRAE-KSYLKCLLVQVIADALYYNSSLTLSILHKL--GVATEVF-NLWFQMLQQVKKNGLRVN 835 (1033)
Q Consensus 760 ~~~~~l~~il~~~~~~l~~~~-~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~--~~~~~~~-~~w~~~~~~~~~~~~~~~ 835 (1033)
.+.||+.+|+..+++|+++++ .++++..++.+...++-+......+.++.+ |.+.+++ +.|+..++ +
T Consensus 756 ~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ii~~l~---------~ 826 (960)
T KOG1992|consen 756 ELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENFIIPELP---------K 826 (960)
T ss_pred hhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHhccccch---------h
Confidence 478999999999999999976 455666667777777778888888888854 4555565 55666667 9
Q ss_pred ccchhhhHHHHHHHHHHhccccCCCChh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCC
Q 001675 836 FKREHDKKVCCLGLTSLLALTADQLPGE---ALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDG 912 (1033)
Q Consensus 836 ~~~~~d~Kl~~lal~~ll~~~~~~l~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~ 912 (1033)
+.+..+||++.+|.++++...+..+.+. .|+.++.+++.+++ .+.. ++- .|++ +
T Consensus 827 i~~~~~rk~~avg~~~l~~e~~~~~d~~y~~l~~~ll~sii~lfe---~p~~-~~~------~~e~------~------- 883 (960)
T KOG1992|consen 827 IILRVDRKIMAVGATGLLTETPELLDQKYAKLWGPLLFSIIVLFE---LPSE-RTV------LDEE------E------- 883 (960)
T ss_pred hhhhhhHHHHHHHHhhhhhhcHHhhhHHHHhhhhhHHHHHHHHHh---CChh-hhc------cCch------h-------
Confidence 9999999999999999999887765333 78999999988888 2211 110 1110 0
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhChHHHH
Q 001675 913 SDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEV-DPFVFFVDTIKVMQASDPLRFQ 991 (1033)
Q Consensus 913 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dd~~~~~pl~~v-d~~~~~~~~l~~~~~~~~~~~~ 991 (1033)
+ -.+.+++.+|... |.+|+.++++. .||+.++ |++.|+.+.+..+.+..|++|.
T Consensus 884 ---e-~~~i~e~~~f~~~-F~~L~~a~~k~--------------------~Dpl~~i~~~k~y~a~sl~~~~~~~~g~~~ 938 (960)
T KOG1992|consen 884 ---E-MAEIEEDPGFQAA-FSRLAYAGKKP--------------------HDPLAQIKDPKQYLAQSLNKLSTASPGRFP 938 (960)
T ss_pred ---h-hhhhhcccchhHH-HHHHHcCCCCC--------------------CCchhhhhhHHHHHHHHHHHHhhcCCCCch
Confidence 0 0012233478777 78888765443 3899997 9999999999999999999998
Q ss_pred HHhcC-CCHHHHHHHHHHHHH
Q 001675 992 NLTQT-LEFQYQALANGVAQH 1011 (1033)
Q Consensus 992 ~l~~~-l~~~~~~~l~~~~~~ 1011 (1033)
++++. |++|.|+.||++++.
T Consensus 939 ~~i~~~l~~e~q~~Lq~~~~~ 959 (960)
T KOG1992|consen 939 QTISTSLPPENQTYLQSYLQA 959 (960)
T ss_pred hhhcccCCHHHHHHHHHHhhc
Confidence 88775 999999999999874
No 4
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-79 Score=670.37 Aligned_cols=903 Identities=19% Similarity=0.288 Sum_probs=676.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhH
Q 001675 6 LALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVD 85 (1033)
Q Consensus 6 L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~ 85 (1033)
++++|+++.|||+.++|.||++|++|+++|||...|..|+.+.+.+..+|++|+|||||.|.++|++.. ...+|+|+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~---~~sl~~EE 78 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNT---KMSLPPEE 78 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCC---cccCCHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999653 46799999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh-------hHHHHHHHHHHHHHHhccCC
Q 001675 86 KDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEFKS 158 (1033)
Q Consensus 86 k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~-------~~~~~L~~L~~i~k~~~~~~ 158 (1033)
|+.||.+++..+.++.+++..|.|.++++|||.|||.+||+|++++.+.+++. ..++.|.+++.++|....+|
T Consensus 79 K~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~R 158 (978)
T KOG1993|consen 79 KDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKR 158 (978)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999886 46899999999999998766
Q ss_pred -cccchHHHHHHHHHHHHHHHHHHHHh--------hccCCC--hhHHHHHHHHHHHhHHhhhhcCCcccCCh--hhHHHH
Q 001675 159 -DEERTPVYRIVEETFHHLLNIFNRLV--------QIVNPS--LEVADLIKLICKIFWSSIYLEIPKQLLDP--NVFNAW 225 (1033)
Q Consensus 159 -~~~~~~l~~i~~~~~p~l~~l~~~~~--------~~~~~~--~~~~~~~~~~lki~~~l~~~~lp~~~~~~--~~l~~w 225 (1033)
...|+.+.+..+.+++.+..++-+.+ .++.+. ..+.+..++.+|.++.++..+...+..++ +.+..+
T Consensus 159 L~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F 238 (978)
T KOG1993|consen 159 LLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQF 238 (978)
T ss_pred HhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH
Confidence 55567777777777775444432221 111111 23567788999999999987765544321 233333
Q ss_pred HHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHH
Q 001675 226 MILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLL 305 (1033)
Q Consensus 226 ~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l 305 (1033)
+.+....+-.... ++....+ ...+.|.-+...+.+..+++|..- ++. . ...+|..+..++..+
T Consensus 239 ~e~~~~~~~~~~s----~~~~~vk-~di~ek~~i~l~K~l~~l~~rhpf-sF~---~--------~~~~~~~l~f~~~yI 301 (978)
T KOG1993|consen 239 LELHQRKLLSSLS----TGTQSVK-SDILEKFCIKLMKVLAFLFNRHPF-SFS---F--------YSPCPVKLEFSIDYI 301 (978)
T ss_pred HHHHHHHHHhhcc----cccchhh-hHHHHHHHHHHHHHHHHHhcCCCc-ccc---c--------ccccceeeehhhhhh
Confidence 3332221111111 1111000 000223333344555555554211 000 0 001111222222211
Q ss_pred Hhh-------hCCcccCHHHHHHHHHHHHhhcCCh-------------------h----hh-hhh-hhhHHHHHHHHhhh
Q 001675 306 NRI-------RVGGYLPDRVTNLILQYLSNSISKN-------------------S----MY-NLL-QPRLDVLLFEIVFP 353 (1033)
Q Consensus 306 ~~~-------~~~~~~~d~~~~~~l~fl~~~~~~~-------------------~----~~-~~~-~~~l~~li~~~i~p 353 (1033)
... ......-++.+.+|+..+..++..+ . .+ +.+ .+.+..||..+|..
T Consensus 302 f~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~ 381 (978)
T KOG1993|consen 302 FDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTH 381 (978)
T ss_pred hcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 110 0011112345555555555332211 0 00 111 35688999999999
Q ss_pred cccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCC-CCCCchhh
Q 001675 354 LMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETP-VEYKPYRQ 432 (1033)
Q Consensus 354 ~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~~~~w~~ 432 (1033)
|+.+|++|+|+|.+||++|+.++... +=.|..|+||+.++..+.+.|++-.+++++.++.+..+...-.+ ++......
T Consensus 382 YflLt~~eLEeW~~dPE~~~~Eq~~~-dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~ 460 (978)
T KOG1993|consen 382 YFLLTEEELEEWTQDPEGWVLEQSGG-DWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLL 460 (978)
T ss_pred HHhcCHHHHHHHhcChHHhhhhcccc-cceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHH
Confidence 99999999999999999999988643 12489999999999999999998888888888877655432111 22346789
Q ss_pred HhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCC---cccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 001675 433 KDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP---VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 509 (1033)
Q Consensus 433 keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~---~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 509 (1033)
|||++.++|..+..+.+.- ++..|+.+..+|+++.. ..++|+|.+|++|+|.+..++. +.-..+|.++++.+
T Consensus 461 KDAiYaa~g~~a~~l~~~~----dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~-e~k~l~Y~a~lnLL 535 (978)
T KOG1993|consen 461 KDAIYAAFGLAAYELSNIL----DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKL-ELKPLLYCAFLNLL 535 (978)
T ss_pred HHHHHHHHHHHHHHHHhcC----CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechH-hHHHHHHHHHHHhc
Confidence 9999999999999987754 57899999999999854 4689999999999999876544 56688999999999
Q ss_pred CCC-CCchHHHHHHHHHHHHHhcc-ccchhhcchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhhcccccccHHHHH
Q 001675 510 RDP-ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGEEMAPYALGLC 583 (1033)
Q Consensus 510 ~d~-~~~Vr~~Aa~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~----l~~~l~~iv~~~~~~i~p~~~~l~ 583 (1033)
+|. +.+||++|+.+++..+++++ .++.+.||++.+...+++++..++..+ +..+|.+++++.++.|.||+..++
T Consensus 536 ~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~iv 615 (978)
T KOG1993|consen 536 QDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIV 615 (978)
T ss_pred CccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 987 99999999999999999998 788999999999999999998876543 789999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCc---hhHHHHHHH
Q 001675 584 QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG---QEVFEEVLE 660 (1033)
Q Consensus 584 ~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~---~~~~~~~l~ 660 (1033)
+.|+. +|+..+. .++.++.++.++..++.+++..+. .+.+.++|+++.+.++.. ..+.|++++
T Consensus 616 q~lp~----LWe~s~~-------e~lLr~alL~~L~~lV~alg~qS~---~~~~fL~pVIel~~D~~sP~hv~L~EDgme 681 (978)
T KOG1993|consen 616 QYLPL----LWEESEE-------EPLLRCALLATLRNLVNALGAQSF---EFYPFLYPVIELSTDPSSPEHVYLLEDGME 681 (978)
T ss_pred HHHHH----HHhhhcc-------CcHHHHHHHHHHHHHHHHhccCCc---cchHHHHHHHHHhcCCCCCceeehhhhHHH
Confidence 99886 6765442 358889999999999999986553 355789999999886543 478999999
Q ss_pred HHHHhhhcCCCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCC
Q 001675 661 IVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLED 740 (1033)
Q Consensus 661 ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~ 740 (1033)
||..++.+++.++|.+..+||.+...++ ..+++++.++.++++|+..+...|++ .|...+++.+.+++.+-+ .
T Consensus 682 LW~~~L~n~~~l~p~ll~L~p~l~~~iE-~ste~L~t~l~Ii~sYilLd~~~fl~----~y~~~i~k~~~~~l~dvr--~ 754 (978)
T KOG1993|consen 682 LWLTTLMNSQKLTPELLLLFPHLLYIIE-QSTENLPTVLMIISSYILLDNTVFLN----DYAFGIFKKLNDLLDDVR--N 754 (978)
T ss_pred HHHHHHhcccccCHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhccHHHHH----HHHHHHHHHHHHHHHHhh--H
Confidence 9999999999999999999999999885 46889999999999999999888886 799999999999986542 2
Q ss_pred CccCchhHHHHHHHHHcccCch-hchHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhhhChHHHHHHHHhhC---c-hH
Q 001675 741 GDIEPAPKLIEVVFQNCKGQVD-HWVEPYLRITVERLR-RAEKSYLKCLLVQVIADALYYNSSLTLSILHKLG---V-AT 814 (1033)
Q Consensus 741 ~~~~~a~~ll~~il~~~~~~~~-~~l~~il~~~~~~l~-~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~---~-~~ 814 (1033)
......+++++.++..-+ .++ -+.++++..++..+. +.+.+++...++.|++|..+.||+.++.+++..+ . ..
T Consensus 755 egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~ 833 (978)
T KOG1993|consen 755 EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA 833 (978)
T ss_pred HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence 224567888888777643 122 244556666665553 4679999999999999999999999999999875 3 45
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 001675 815 EVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAED 894 (1033)
Q Consensus 815 ~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 894 (1033)
.++..|+..++ ++..+.+||+.++|+++||..+.+.+.+ .++.|++.++++|.+. + |. +.
T Consensus 834 ~li~~WI~~~~---------~I~~~k~rKl~~LalsSll~t~~~~ila-~~~~I~nl~~e~L~eV---~-ed---~~--- 893 (978)
T KOG1993|consen 834 MLIGNWILLFD---------HINHPKDRKLNTLALSSLLRTNNPDILA-VLDSIMNLWFEVLSEV---M-ED---AN--- 893 (978)
T ss_pred HHHHHHHHHcc---------cCCCHHHhhHHHHHHHHHhccCCcHHHH-HHhHHHHHHHHHHHHH---h-hh---cc---
Confidence 78899999999 9999999999999999999987654332 6888999999999833 2 11 11
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Q 001675 895 DDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVF 974 (1033)
Q Consensus 895 ~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dd~~~~~pl~~vd~~~~ 974 (1033)
+|.. ++.. .||- .+-+.-+|+. .+++.+-.++ ...||++.|....|
T Consensus 894 g~~~-~~~~---~d~~----~e~~~~~d~t-teq~~r~k~l-------------------------~lkDPVh~vsl~~f 939 (978)
T KOG1993|consen 894 GDAT-DYHL---NDDL----SEQGVYEDET-TEQDTRHKQL-------------------------LLKDPVHSVSLRSF 939 (978)
T ss_pred CchH-HHHh---hhhh----hccccCCchh-hHHHHHHHHH-------------------------hccCCcccccHHHH
Confidence 1111 1110 0010 0001111111 2223332222 12489999999999
Q ss_pred HHHHHHHHHhhCh-HHHHHHhcCCCHHHHHHHHHHHH
Q 001675 975 FVDTIKVMQASDP-LRFQNLTQTLEFQYQALANGVAQ 1010 (1033)
Q Consensus 975 ~~~~l~~~~~~~~-~~~~~l~~~l~~~~~~~l~~~~~ 1010 (1033)
+.+.|..++.+.+ ++|++.++..+|+-.+.+|.+++
T Consensus 940 i~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~ 976 (978)
T KOG1993|consen 940 IISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLS 976 (978)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHc
Confidence 9999999998777 58999999999999999998875
No 5
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=2.3e-74 Score=644.81 Aligned_cols=915 Identities=18% Similarity=0.272 Sum_probs=676.2
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCC-Cc-C
Q 001675 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NE-Q 78 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~-~~-~ 78 (1033)
|+.+.|..+|.+++|||+++|.+||.+|++++..+||..+|.+++.++..+.+.||+|.|+||++|.+||++..+ +. +
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 566789999999999999999999999999999999999999999998889999999999999999999998765 33 3
Q ss_pred CCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhc
Q 001675 79 QKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYE 155 (1033)
Q Consensus 79 ~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~ 155 (1033)
...+++.|..||+.|+.++..++++||+..+++|+.||+.|||++||+|++.+..+++++ .++|+|.+|.++..+.-
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 348899999999999999999999999999999999999999999999999999999976 68999999999997641
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhc--CCcccC------ChhhHHHHHH
Q 001675 156 FKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLE--IPKQLL------DPNVFNAWMI 227 (1033)
Q Consensus 156 ~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~--lp~~~~------~~~~l~~w~~ 227 (1033)
-+.+..+.+...|.+..+|..... ++. ...++...+|.|++|..+- ..+.-+ -...+.+||.
T Consensus 161 ------~ee~~~~~~~~l~~m~~~f~~~~~---~s~-~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 161 ------VEEMFFVGPVSLAEMYRIFALTIV---YSI-ITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred ------HHHHhcccccchhhhhhhhhhccc---cch-hHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012223334445555555543221 111 1122222257777765421 100000 0134556666
Q ss_pred HHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 001675 228 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 307 (1033)
Q Consensus 228 ~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~ 307 (1033)
.+...++...+ ..|..+..+.++++.+++.|.. +. .+++-.++..+|+.+.+
T Consensus 231 ~l~h~l~~~~g--------------~~~~~~~eilk~~t~l~~nfp~--~~------------~~~~~~~~~~vw~~~~~ 282 (1005)
T KOG2274|consen 231 ILEHPLQRNDG--------------SDFSLRMEILKCLTQLVENFPS--LI------------NPFMMGMFSIVWQTLEK 282 (1005)
T ss_pred HHhhhhccccc--------------chHHHHHHHHHHHHHHHHhhHH--hh------------hHHHHhhhhHHHHHHHH
Confidence 65555554321 1267888899999999988743 21 22233334444554433
Q ss_pred h-----------hC-----------CcccCHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhh
Q 001675 308 I-----------RV-----------GGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLW 365 (1033)
Q Consensus 308 ~-----------~~-----------~~~~~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~w 365 (1033)
. .+ ..+..+.++.++++|++.+++.....+.++..+..++..++ -|++++++.++.|
T Consensus 283 ~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v-~y~Qlseeqie~w 361 (1005)
T KOG2274|consen 283 ILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLV-AYLQLSEEQIEVW 361 (1005)
T ss_pred HHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhHHHHHHH
Confidence 1 00 01223578889999999999888777778778888888877 4789999999999
Q ss_pred hhCHHHHHHHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCC--CCCCCchhhHhHHHHHHHHH
Q 001675 366 DEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDET--PVEYKPYRQKDGALLAIGAL 443 (1033)
Q Consensus 366 e~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~--~~~~~~w~~keaal~~lg~l 443 (1033)
.+||++||.++++. ++.|.++.+++..+...++...+.++.+.....++...++ .++..||+..++.+++.+..
T Consensus 362 ~sD~~~fV~dEd~~----~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~ 437 (1005)
T KOG2274|consen 362 TSDVNQFVADEDDG----YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESV 437 (1005)
T ss_pred hccHHHhhccCCCC----chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhc
Confidence 99999999988653 7889999999999999999888888888755555443221 12234899999999998876
Q ss_pred HHhhhcCCcchhHHHHHHHHhhcccCC-CCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHH
Q 001675 444 CDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSV 521 (1033)
Q Consensus 444 a~~l~~~~~~~~~l~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-d~~~~Vr~~Aa 521 (1033)
.. .+..++.-..+...+...+. +..|+|-.||+|++++|++...-+++.+..++...++.+. +...++|+.|+
T Consensus 438 ~~-----~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~ 512 (1005)
T KOG2274|consen 438 RI-----DDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAV 512 (1005)
T ss_pred cc-----CcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHH
Confidence 62 22233444555555555555 4568888899999999988644466778888999888886 66778999999
Q ss_pred HHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhc--ccccc-cHHHHHHHHHHHHHHHHhhcc
Q 001675 522 FALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG--EEMAP-YALGLCQNLAAAFWRCMNTAE 598 (1033)
Q Consensus 522 ~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~--~~i~p-~~~~l~~~L~~~~~~~~~~~~ 598 (1033)
+++..+| ....+.|+.|.++.+|.++....+.+.+..+|+++..+++ .+.+- .-..++......|.. ..
T Consensus 513 ~~~~~~~----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k----~s 584 (1005)
T KOG2274|consen 513 RAFCGYC----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK----YS 584 (1005)
T ss_pred HHHHhcc----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH----hc
Confidence 9999888 3688999999999999999999999988888888765543 11111 111233333333333 22
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCc----hhHHHHHHHHHHHhhhcCC-CCC
Q 001675 599 ADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG----QEVFEEVLEIVSYMTFFSP-TIS 673 (1033)
Q Consensus 599 ~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~----~~~~~~~l~ll~~l~~~~~-~is 673 (1033)
.|| ..+...-+++..+++ ..++++++.+.++|.+-.+++.+. .....-++++++.++++.| +++
T Consensus 585 ~DP-------~V~~~~qd~f~el~q----~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~ 653 (1005)
T KOG2274|consen 585 EDP-------QVASLAQDLFEELLQ----IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP 653 (1005)
T ss_pred CCc-------hHHHHHHHHHHHHHH----HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence 344 223333344444444 456677888999999999997655 5788899999999999875 455
Q ss_pred HhH-HHHHHHHHHH-hhhhHhhhhhhhhhhhhhhhccCcccccccCCcch--HHHHHHHHHHHhcCCCCCCCccCchhHH
Q 001675 674 LEM-WSLWPLMMEA-LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDY--QQSLWSMVSSIMADKNLEDGDIEPAPKL 749 (1033)
Q Consensus 674 p~l-~~l~~~l~~~-~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~--~~~il~i~~~~l~~~~~~~~~~~~a~~l 749 (1033)
..+ -..||.+.+| +++++.+.++...+||++||..+.+++++|++.+. +..|+++..++|+ +..+++.+.+++++
T Consensus 654 ~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd-p~~sds~a~~VG~l 732 (1005)
T KOG2274|consen 654 NLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD-PETSDSAAAFVGPL 732 (1005)
T ss_pred HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC-CccchhHHHHHhHH
Confidence 444 4789999999 46777889999999999999999999999976543 4599999999996 45778888899999
Q ss_pred HHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhChHHHHHHHHhh------CchHHHHHHHHHH
Q 001675 750 IEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKL------GVATEVFNLWFQM 823 (1033)
Q Consensus 750 l~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~------~~~~~~~~~w~~~ 823 (1033)
+..++.+++..+++-+++|+.+++.||+.+++..+.++++.||+.+++.+++.++++|.+. ..++.++..|+++
T Consensus 733 V~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~sr 812 (1005)
T KOG2274|consen 733 VLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSR 812 (1005)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999994 3578999999999
Q ss_pred HHHHHhhcccccccchhhhHHHHHHHHHHhccc----cCCCChh-------------------------hHH--HHHHHH
Q 001675 824 LQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT----ADQLPGE-------------------------ALG--RVFRAT 872 (1033)
Q Consensus 824 ~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~----~~~l~~~-------------------------~~~--~~~~~~ 872 (1033)
+. -|.|.|++|+++.++|++|... ..+|... .|. .++.++
T Consensus 813 qh---------l~~g~ye~kv~i~alc~al~~~~~~ddkrLq~V~VkGelI~s~d~~I~TRSka~k~Perwt~IPl~vKI 883 (1005)
T KOG2274|consen 813 QH---------LYFGEYEGKVSIKALCKALQHLISTDDKRLQKVRVKGELIYSMDEGIITRSKAKKNPERWTNIPLLVKI 883 (1005)
T ss_pred hh---------hhhhhhhchhhHHHHHHHHHhhhccCChhhceeeECCeecccCCCCeeehhhhccCchheeeccHHHHH
Confidence 98 9999999999999999988664 2222211 121 234566
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCC
Q 001675 873 LDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDS 952 (1033)
Q Consensus 873 ~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 952 (1033)
++||. .++.+-.|+.... ++...++..|+.+|+|||.+++. +++ |+-. .+.+... +. .|.|..
T Consensus 884 lkLli---~Els~~~e~~~~~-qa~p~e~sqdd~nD~wdD~~~~~---e~~-d~l~---g~~lsD~---l~---~d~D~~ 946 (1005)
T KOG2274|consen 884 LKLLI---SELSNVSEQNAAR-QAIPSEWSQDDGNDMWDDQPEEE---EEE-DGLA---GQLLSDI---LE---TDVDEY 946 (1005)
T ss_pred HHHHH---HHHHHHhhccccc-ccCCchhhhhccccccccCCcCc---ccc-cchh---hhhHHHH---Hh---cccccc
Confidence 77777 6776665543322 33334455555667776544321 111 2211 1122211 11 122222
Q ss_pred CCCC-CCCCCCCCCCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHH
Q 001675 953 DDDF-SDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVA 1009 (1033)
Q Consensus 953 ~~~~-~dd~~~~~pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~ 1009 (1033)
+||+ ||-+...||++++|+..|+.+||.++.++|...|..+.++|+.++|..|+.+.
T Consensus 947 eDDe~dd~~~lkd~~yq~dlq~yL~dFl~efa~~d~~~f~~~~~~L~d~ER~VL~~i~ 1004 (1005)
T KOG2274|consen 947 EDDEEDDPDLLKDPLYQIDLQAYLTDFLKEFASQDRPCFIMFYEHLTDNERRVLQTIL 1004 (1005)
T ss_pred ccccccchhhccCcchhhhHHHHHHHHHHHHHhcCCcchhHHHhccCHHHHHHHHHhh
Confidence 2323 33446689999999999999999999999999999999999999999998764
No 6
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.6e-58 Score=520.53 Aligned_cols=902 Identities=18% Similarity=0.208 Sum_probs=606.8
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCC
Q 001675 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~ 80 (1033)
|+.-..+..+..+.|+|+.++|.||+.|++|++++||...|++|..+...+.++|++|+|+|||+|++||+... ...
T Consensus 1 M~~~~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~---~~~ 77 (947)
T COG5657 1 MEDLPVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREEN---GNS 77 (947)
T ss_pred CCchHHHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhc---ccC
Confidence 66556667778889999999999999999999999999999999999889999999999999999999999643 345
Q ss_pred CChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhccC
Q 001675 81 ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFK 157 (1033)
Q Consensus 81 l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~ 157 (1033)
+.++++..||..++.++.++++.+..|.|+|++.||+.|||.+||+|+|++...+++. ...+.|.+++.++|+++.
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~- 156 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR- 156 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh-
Confidence 7778888999999999999999999999999999999999999999999999999986 468999999999999972
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhhccC---C-C---hhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHH
Q 001675 158 SDEERTPVYRIVEETFHHLLNIFNRLVQIVN---P-S---LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFL 230 (1033)
Q Consensus 158 ~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~---~-~---~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~ 230 (1033)
-...++.+..+.+.+.+.+.+++-+....++ + . ....++....||.|+...+.+.|++++ +++..||..|.
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfE--d~l~~~m~~F~ 234 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFE--DNLDKFMEHFC 234 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHH--HHHHHHHHHHH
Confidence 1222345556666666655555544332211 0 0 123444555667777777788888886 89999999999
Q ss_pred HHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhC
Q 001675 231 NVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRV 310 (1033)
Q Consensus 231 ~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~ 310 (1033)
..++...|. . ..|. .+...+.++|..++.+++.+.++|.+ ....+.-.|++.+|+.++...+
T Consensus 235 klls~~~~~-l-q~~~--le~~~~~~l~~~i~e~f~ly~t~yp~--------------~it~li~dfv~~vw~~lttit~ 296 (947)
T COG5657 235 KLLSYSNPV-L-QKDC--LEDCVYFKLKGSICEIFNLYTTKYPE--------------VITYLIYDFVEIVWNLLTTITR 296 (947)
T ss_pred HHHhhcchh-h-hhhh--cccceeeeecccHHHHHHHHhhccHH--------------HhhHHHHHHHHHHHHHHHhhcC
Confidence 999865441 1 1111 11134678888899999988888743 1122556788899999988654
Q ss_pred CcccCHHHHHHHHHHHHhhcC--Chhhhhhhh----hhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccC
Q 001675 311 GGYLPDRVTNLILQYLSNSIS--KNSMYNLLQ----PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLY 384 (1033)
Q Consensus 311 ~~~~~d~~~~~~l~fl~~~~~--~~~~~~~~~----~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~ 384 (1033)
.+..|.++...+.++..+.+ .+++...+. ..+.+++..++.|+++++++|+|.|++||.||+|+..... -.+
T Consensus 297 -~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~d-ye~ 374 (947)
T COG5657 297 -PYIRDYLVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTD-YEV 374 (947)
T ss_pred -ccccchhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhcccc-chh
Confidence 35678899999999999887 455665543 3678899999999999999999999999999999776532 135
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHh
Q 001675 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (1033)
Q Consensus 385 s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~ 464 (1033)
..|.++.+.+..+...++.-+ ..++..++.++...|......+.++|++...|...+.+.. ..++..|+.+.
T Consensus 375 ~vr~~~~~~l~~~f~~~~~i~----~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~----~~~~v~~~~~~ 446 (947)
T COG5657 375 NVRPCIENELKDLFDVFGRIA----VGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNR----MVDFVKFLGSI 446 (947)
T ss_pred hhhHHHHHHHHHHHHHHhhHh----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHh
Confidence 789999999999988887433 4444455555555663334678888888888755555543 23577889999
Q ss_pred hcccCCCC----cc-cchHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhccccc-
Q 001675 465 VFPEFSSP----VG-HLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLN- 535 (1033)
Q Consensus 465 v~p~l~~~----~~-~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~L~d~-~~~Vr~~Aa~al~~~~~~~~~~~- 535 (1033)
+.|++.++ |+ ++|+|+..++..+... ++.+ +.---.++..+..+.+. +.+|-.....|....++.+....
T Consensus 447 ~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l-~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~ 525 (947)
T COG5657 447 IYPDLLSPNEIIHLRILRSRIAYILTFRNQL-DSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC 525 (947)
T ss_pred cCccccCcccCceeEEehhccchheechhhh-hhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc
Confidence 99999874 33 5666666666555432 2222 11011111222333221 22333444445555565554222
Q ss_pred hhhcchHHHHHHHHHHhhhhch----hhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHH
Q 001675 536 EIRPILPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAA 611 (1033)
Q Consensus 536 ~l~p~l~~il~~L~~ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~ 611 (1033)
..-+..++++-.+++++...+. +.++.++.+++..-++.+.|...++++.|.+ +|.....|| ..+.+.
T Consensus 526 ~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~----lv~~~~knp----s~p~~~ 597 (947)
T COG5657 526 SKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDN----LVEINAKNP----SNPQFA 597 (947)
T ss_pred cccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHH----HHHHHccCC----ccHHHH
Confidence 3334445555555565554433 3467777788887889999988899998886 344334455 356688
Q ss_pred HHHHHHHHHHHHhccC-ChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCC-C-CCHhHHHHHHHHHHHhh
Q 001675 612 VGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-T-ISLEMWSLWPLMMEALA 688 (1033)
Q Consensus 612 ~~~l~~i~~li~~~~~-~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~-~-isp~l~~l~~~l~~~~~ 688 (1033)
+..++.|+.++..... -+...+.+...+.|.+..+++.|..++..+.+++++.+..... . +++-...+....... +
T Consensus 598 h~~fe~I~al~~~~~~~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~~~t-~ 676 (947)
T COG5657 598 HYTFEDIGALVFLKSGMCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPSLAT-E 676 (947)
T ss_pred HHHHHHHHHHHHhhhcccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhcccCch-H
Confidence 9999999999887643 2223344555566655555555555666666666666654321 1 221111100000000 0
Q ss_pred hhH-hhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC--chhch
Q 001675 689 DWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ--VDHWV 765 (1033)
Q Consensus 689 ~~~-~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~--~~~~l 765 (1033)
-|. ...+..+...+++.+..+++.|-. .+...++.++++++.++.. +. .|.+....+..+..+ ..+++
T Consensus 677 ll~~~~~I~~~~~Ll~~~~~~~~~if~~----s~~~~vL~i~~~ll~~e~~-~~----~~f~~~~~v~~l~~~~i~~~~v 747 (947)
T COG5657 677 LLPTKLEILKSYRLLDNPILTTGYIFKS----SGFQPVLGILQYLLGSEPH-DA----LCFLNLTVVETLYLENIYEPYV 747 (947)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccccc----cchhhhHHHHHHHHhcchH-HH----HHHhhHHHHHHhHHHHHHhhcH
Confidence 011 235556667788877777776653 5678899999999976532 22 566666666664432 46889
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh-----ChHHHHHHHHh--hCchHHHHHHHHHHHHHHHhhcccccccc
Q 001675 766 EPYLRITVERLRRAEKSYLKCLLVQVIADALYY-----NSSLTLSILHK--LGVATEVFNLWFQMLQQVKKNGLRVNFKR 838 (1033)
Q Consensus 766 ~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~-----~~~~~l~~L~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 838 (1033)
..|...+++|+++++++.+...++.+|+....- +++.++...++ .+....++..|+-..+ .+..
T Consensus 748 ~~i~~lll~rl~ns~~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g~~Il~~~---------~i~~ 818 (947)
T COG5657 748 NLIFVLLLSRLKNSKTERFVIKIIHVFSLVSFKDSLTVGCDNLISKINQTKNILIVQLYGNWILGFD---------EIHD 818 (947)
T ss_pred HHHHHHHHHHhhcccchHHHHHhheeeEEechhhccccCChHHHHHHHHHHHHHHHHHHhceeeccc---------hhcc
Confidence 999999999999988888888777666654322 34455555543 2556778899988888 7888
Q ss_pred hhhhHHHHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCC
Q 001675 839 EHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMG 918 (1033)
Q Consensus 839 ~~d~Kl~~lal~~ll~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~ 918 (1033)
+.+||+.++|+.+++.+..+..-+ ...+.+.++.+|. ++.+... +|..-+.-.|+..|+|
T Consensus 819 ~~drKi~~ig~snllrt~~~~vls--~~sv~~li~~lLs----ei~et~~------~da~i~~~~dd~~d~~-------- 878 (947)
T COG5657 819 SKDRKIHLIGLSNLLRTLHPEVLS--YVSVTNLIISLLS----EIFETAS------GDAIIYELNDDYADDW-------- 878 (947)
T ss_pred HHHHHHHHHhHHhhhhhcCchhhh--HHHHHHHHHHHHH----HHHHhcc------Ccceehhhccchhhhc--------
Confidence 999999999999999775433221 2344455556665 2222221 1110000000111121
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCC
Q 001675 919 VDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLE 998 (1033)
Q Consensus 919 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dd~~~~~pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~ 998 (1033)
++++.+ .++ +.+++.-..+ .||+.++|...+|-.+...+..+|.+.-+.+...|+
T Consensus 879 -~~~~is--~~~-f~r~~~~~~k---------------------~Dp~~~i~~~~~~is~~m~~~~sn~g~~n~~~~~L~ 933 (947)
T COG5657 879 -FDGEIS--AEE-FSRLAQLEFK---------------------VDPVHDIDNTKYFISFFMEAMNSNLGNENEIVFRLP 933 (947)
T ss_pred -cccCcc--HHH-HHHHHHhhcc---------------------CCCccccchHHHHHHHHHHHHHhcccchhHHHHhcC
Confidence 111222 222 5555553222 389999988555656666667778887778888999
Q ss_pred HHHHHHHHHHH
Q 001675 999 FQYQALANGVA 1009 (1033)
Q Consensus 999 ~~~~~~l~~~~ 1009 (1033)
.+.|..|+++.
T Consensus 934 ~~nq~~L~q~~ 944 (947)
T COG5657 934 TENQSLLEQLQ 944 (947)
T ss_pred CcCHHHHHHHh
Confidence 99999988764
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-52 Score=453.11 Aligned_cols=761 Identities=18% Similarity=0.241 Sum_probs=583.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhc-CcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCC
Q 001675 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDN-NCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1033)
Q Consensus 3 ~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~-~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l 81 (1033)
++++.++|+.+.|||+++|+.+..+|.++...|+|..+|..|+.+. +.+.++|.+|+.+|||.|+.+|.. +
T Consensus 12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~--------~ 83 (885)
T KOG2023|consen 12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNS--------I 83 (885)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccC--------C
Confidence 5789999999999999999999999999999999999999998753 457899999999999999999984 8
Q ss_pred ChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhcc--
Q 001675 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF-- 156 (1033)
Q Consensus 82 ~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~-- 156 (1033)
+.+.+.+||+..++++..+++.||...+.+|+.|+...+-..||+++|.+.+++.++ ...||+.+|.+||++-.-
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l 163 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL 163 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH
Confidence 889999999999999999999999999999999999999999999999999999988 468999999999987531
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 001675 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (1033)
Q Consensus 157 ~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l~~~ 236 (1033)
.++-..+++ +.+.|.+++++++. ++.+|..+++|.+..+. ..+..+. .++..+++.+...-+
T Consensus 164 ds~~~~rpl----~~mipkfl~f~~h~---------spkiRs~A~~cvNq~i~-~~~qal~--~~iD~Fle~lFalan-- 225 (885)
T KOG2023|consen 164 DSDVLTRPL----NIMIPKFLQFFKHP---------SPKIRSHAVGCVNQFII-IQTQALY--VHIDKFLEILFALAN-- 225 (885)
T ss_pred hhhcccCch----HHhHHHHHHHHhCC---------ChhHHHHHHhhhhheee-cCcHHHH--HHHHHHHHHHHHHcc--
Confidence 222222344 45567777777642 36789999999876542 1122221 344555544333221
Q ss_pred CCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 001675 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (1033)
Q Consensus 237 ~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~d 316 (1033)
|++ -.++|.+|+.+.-+.+.-.+ . ..+|++.+++.++.... -..+
T Consensus 226 --------D~~-------~eVRk~vC~alv~Llevr~d--k------------l~phl~~IveyML~~tq------d~dE 270 (885)
T KOG2023|consen 226 --------DED-------PEVRKNVCRALVFLLEVRPD--K------------LVPHLDNIVEYMLQRTQ------DVDE 270 (885)
T ss_pred --------CCC-------HHHHHHHHHHHHHHHHhcHH--h------------cccchHHHHHHHHHHcc------Ccch
Confidence 222 15788899998877764211 1 12367778877765432 2356
Q ss_pred HHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHH-HHH-------H--------------
Q 001675 317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPH-EYV-------R-------------- 374 (1033)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~-efi-------~-------------- 374 (1033)
.+...+.+||...++.+-....+.|++..|+..++ ..|.+++.|+-+..++.+ +++ +
T Consensus 271 ~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl-~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~ 349 (885)
T KOG2023|consen 271 NVALEACEFWLALAEQPICKEVLQPYLDKLIPVLL-SGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGED 349 (885)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH-ccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccc
Confidence 78899999999999999777889999999988554 899999999888773222 111 1
Q ss_pred --Hh---cC--cccc---cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHH
Q 001675 375 --KG---YD--IIED---LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC 444 (1033)
Q Consensus 375 --~~---~d--~~~d---~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la 444 (1033)
++ +| +.+| .|+.|.|++..|..|+..+|+++++.+++++.+.|.+ +.|+.|||+..++|++|
T Consensus 350 ~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~--------~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 350 ADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS--------EEWKVREAGVLALGAIA 421 (885)
T ss_pred cccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--------chhhhhhhhHHHHHHHH
Confidence 00 01 0011 3889999999999999999999999999999999875 38999999999999999
Q ss_pred HhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHH
Q 001675 445 DKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVF 522 (1033)
Q Consensus 445 ~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~L~d~~~~Vr~~Aa~ 522 (1033)
+++.+. +.+.+. -+..++++.|.+..|.+|.-+||++|||+.+.+..+ +++..++..++..+-|.+..|+.+||.
T Consensus 422 EGcM~g--~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcs 498 (885)
T KOG2023|consen 422 EGCMQG--FVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACS 498 (885)
T ss_pred HHHhhh--cccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 998653 222332 234666777888999999999999999999876554 689999999999999999999999999
Q ss_pred HHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccccc--cHHHHHHHHHHHHHHHHhhc
Q 001675 523 ALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWRCMNTA 597 (1033)
Q Consensus 523 al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~ 597 (1033)
|+..+-+. ..+.+.||+..|++.|...++.+.... +..++.++.+..+..+.. |..-|+..|.+ -|+.-
T Consensus 499 AfAtleE~--A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~----KW~~l 572 (885)
T KOG2023|consen 499 AFATLEEE--AGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIE----KWELL 572 (885)
T ss_pred HHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHH----HHHhc
Confidence 99999887 468999999999999999998876653 678999999888877643 45555555554 56543
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHhccC--ChHHHHHHHhhHHHHHHHHcc------c------CchhHHHHHHHHHH
Q 001675 598 EADEDADDPGALAAVGCLRAISTILESVSR--LPHLFVQIEPTLLPIMRRMLT------T------DGQEVFEEVLEIVS 663 (1033)
Q Consensus 598 ~~d~~~~~~~~~~~~~~l~~i~~li~~~~~--~~~~~~~l~~~~~p~i~~il~------~------~~~~~~~~~l~ll~ 663 (1033)
+++ |+.++ -++||++++..+++. -| ....+.++++.++.++++ + ...+|+--++++++
T Consensus 573 sd~-----DKdLf--PLLEClSsia~AL~~gF~P-~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~S 644 (885)
T KOG2023|consen 573 SDS-----DKDLF--PLLECLSSIASALGVGFLP-YAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLS 644 (885)
T ss_pred Ccc-----cchHH--HHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHh
Confidence 322 35555 589999999999863 23 223455677777776543 1 12378888999999
Q ss_pred HhhhcCC-CCCHhHH--HHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCC
Q 001675 664 YMTFFSP-TISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLED 740 (1033)
Q Consensus 664 ~l~~~~~-~isp~l~--~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~ 740 (1033)
.+.+..+ .+.|.+. .+...++.|+++.-.+..+..+.+|.-+.....+.+. +++..++.++..-++.. .-
T Consensus 645 GLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~-----p~~~~fl~~lg~Nl~~~--~i 717 (885)
T KOG2023|consen 645 GLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI-----PNLADFLPILGANLNPE--NI 717 (885)
T ss_pred HHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHhhcCChh--hc
Confidence 9987653 3433332 4777788888765567778877777776666666665 67777777777666544 23
Q ss_pred CccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhChHHHHHHHHhhCchHHHHHH
Q 001675 741 GDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE-KSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNL 819 (1033)
Q Consensus 741 ~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~-~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 819 (1033)
+.+..|+..+..|..+++....+|+++++..++..++... .+++....-..+.++-+++|+.+-..++ .|++.
T Consensus 718 sv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~------~f~~p 791 (885)
T KOG2023|consen 718 SVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLD------SFMRP 791 (885)
T ss_pred hHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHH------HHHHH
Confidence 4467899999999999998889999999999999888644 5567777778899999999999988776 68999
Q ss_pred HHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccccCCCChh--hHHHHHHHH
Q 001675 820 WFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGE--ALGRVFRAT 872 (1033)
Q Consensus 820 w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~~~~l~~~--~~~~~~~~~ 872 (1033)
||..+. ++....+|--...|+|.++..++..+-.. .+.+++.++
T Consensus 792 Wc~sl~---------~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw 837 (885)
T KOG2023|consen 792 WCTSLR---------NIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASW 837 (885)
T ss_pred HHHHhc---------ccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcc
Confidence 999999 99999999999999999999877654333 445555443
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-46 Score=437.16 Aligned_cols=675 Identities=18% Similarity=0.273 Sum_probs=476.3
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCC
Q 001675 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~ 80 (1033)
||.++|.|++++.+|||+.+|++||+.|+.....+..+..|.+|+.. +.++.+||+|||.+|+.+.++|+.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~~-------- 71 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWSR-------- 71 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhc--------
Confidence 88999999999999999999999999999776666677788888776 569999999999999999999985
Q ss_pred CChhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhcc
Q 001675 81 ISQVDKDMVRDHILVFV-AQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (1033)
Q Consensus 81 l~~~~k~~ir~~Ll~~l-~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~ 156 (1033)
++++.|+.||+.|+.++ .++.+.||+.+|.+|+.||+.+.|++||+|++.++++.+|+ ..+.|+++|..+...+.
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~- 150 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG- 150 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc-
Confidence 99999999999999997 56889999999999999999999999999999999999998 35789999999887652
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 001675 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (1033)
Q Consensus 157 ~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l~~~ 236 (1033)
+. ...+++.++.+|.+.++.++ ..++..+++.+...... ++..-.....+...++-++.++...
T Consensus 151 --~~--------~~~~~~~l~~lf~q~~~d~s-----~~vr~~a~rA~~a~~~~-~~~~~~~~~~~~~llP~~l~vl~~~ 214 (1075)
T KOG2171|consen 151 --NT--------LQPHLDDLLRLFSQTMTDPS-----SPVRVAAVRALGAFAEY-LENNKSEVDKFRDLLPSLLNVLQEV 214 (1075)
T ss_pred --cc--------cchhHHHHHHHHHHhccCCc-----chHHHHHHHHHHHHHHH-hccchHHHHHHHHHhHHHHHHhHhh
Confidence 11 12345667777777776432 22666666766554321 1100001134555555555566543
Q ss_pred CCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 001675 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (1033)
Q Consensus 237 ~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~d 316 (1033)
++ ..|+ +.-+.+++.++.+.... |+ +.++++..+++..+++..+ ..+.+
T Consensus 215 i~----~~d~---------~~a~~~l~~l~El~e~~--pk------------~l~~~l~~ii~~~l~Ia~n----~~l~~ 263 (1075)
T KOG2171|consen 215 IQ----DGDD---------DAAKSALEALIELLESE--PK------------LLRPHLSQIIQFSLEIAKN----KELEN 263 (1075)
T ss_pred hh----ccch---------HHHHHHHHHHHHHHhhc--hH------------HHHHHHHHHHHHHHHHhhc----ccccH
Confidence 32 2222 22356888888888753 32 4455677777877777654 24568
Q ss_pred HHHHHHHHHHHhhcCChhhh-hhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHH
Q 001675 317 RVTNLILQYLSNSISKNSMY-NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (1033)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~-~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~ 395 (1033)
..++.+++|+.++++.++.. +...+....|+..++ . ++++.+. | +||...+..+.++..++...|.+.+.
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l-~--~mte~~~-----D-~ew~~~d~~ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLL-A--MMTEEED-----D-DEWSNEDDLDEDDEETPYRAAEQALD 334 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHH-H--hcCCccc-----c-hhhccccccccccccCcHHHHHHHHH
Confidence 89999999999998874322 222333344443322 1 2344332 2 44544333222345789999999999
Q ss_pred HHHHhcc-cchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcc
Q 001675 396 ELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVG 474 (1033)
Q Consensus 396 ~L~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~ 474 (1033)
.++.+.| +.+++++++++..++++ .+|+.|.|+|++++++++++.+. +..+++++ .++|++.|+++||
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S--------~~w~~R~AaL~Als~i~EGc~~~--m~~~l~~I-l~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQS--------TEWKERHAALLALSVIAEGCSDV--MIGNLPKI-LPIVLNGLNDPHP 403 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHcccHHH--HHHHHHHH-HHHHHhhcCCCCH
Confidence 9999975 78999999999999976 38999999999999999998763 34466665 4789999999999
Q ss_pred cchHHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHH
Q 001675 475 HLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 550 (1033)
Q Consensus 475 ~lr~ra~~~l~~~~~~~~~~~---~~~~~~~~~l~~~L~d~-~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ 550 (1033)
.+|..||.++||++. .|.+. .+...+.++++..+.++ ++.|+.+||.|+-+|.+.+ .++.+.||++.+|+.++.
T Consensus 404 rVr~AA~naigQ~st-dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMST-DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred HHHHHHHHHHHhhhh-hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence 999999999999987 45443 34666777888888876 5679999999999999998 589999999999998777
Q ss_pred Hhhhhch----hhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhcc
Q 001675 551 LMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 626 (1033)
Q Consensus 551 ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~ 626 (1033)
.+.+.+. +.++.++.++....++.+.||.+.++..|... +.+..++ +....+...++|++.+-.+++
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~----L~n~~~~-----d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNF----LQNADDK-----DLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH----HhCCCch-----hhHHHHhhHHHHHHHHHHHhh
Confidence 7755443 34778888888999999999999999999873 3333321 355677788999999999997
Q ss_pred CChHHHHHHHhhHHHHHHHHcc---cCchhHHHHHHHHHHHhhhcC-CCCCHhHHHHHHHHHHHhhhhH-hhhhhhhhhh
Q 001675 627 RLPHLFVQIEPTLLPIMRRMLT---TDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWA-IDFFPNILVP 701 (1033)
Q Consensus 627 ~~~~~~~~l~~~~~p~i~~il~---~~~~~~~~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~~~~~~~-~~~~~~~~~~ 701 (1033)
..+ +..+.+.++.++...-. .+.....++.+..|+.+.+-. +.+.|.+..++|.++....-.. ...+.+ ..
T Consensus 553 ke~--F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--~d 628 (1075)
T KOG2171|consen 553 KEK--FLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--ED 628 (1075)
T ss_pred hhh--hhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--hh
Confidence 532 33333444444333211 223356788888888887643 5677777777777766542110 000000 00
Q ss_pred hhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHh
Q 001675 702 LDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (1033)
Q Consensus 702 L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~ 778 (1033)
..++-..+.-.+..-++.+ -++|-.. ...+...||..+..+...++..+.||+.+.+...+..+.-
T Consensus 629 ~e~~~~~~~~e~~~~~~~e----~~~I~Ts-------vl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f 694 (1075)
T KOG2171|consen 629 EEEEQDLDGWEVVELGDKE----NIGIRTS-------VLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKF 694 (1075)
T ss_pred hhhccccccchhhccCCce----eeeeeeh-------hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 0000000000000000111 2222222 2223466999999999999999999999999966666654
No 9
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=6.2e-48 Score=423.70 Aligned_cols=349 Identities=26% Similarity=0.435 Sum_probs=279.3
Q ss_pred HHHHhcc--CCcccchHHHHHHHHHHHHHHHHHHHHhhc---cCCC----hhHHHHHHHHHHHhHHhhhhcCCcccCChh
Q 001675 150 LSRKYEF--KSDEERTPVYRIVEETFHHLLNIFNRLVQI---VNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPN 220 (1033)
Q Consensus 150 i~k~~~~--~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~---~~~~----~~~~~~~~~~lki~~~l~~~~lp~~~~~~~ 220 (1033)
|+|+||+ ++++.+.+++.++..+..+|+.++..+.+. ...+ ....+++++++|||++++++++|++|+ +
T Consensus 1 ifkr~r~~~~s~~l~~eik~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fe--d 78 (370)
T PF08506_consen 1 IFKRYRYQFRSDELYTEIKYVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFE--D 78 (370)
T ss_dssp HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHH--H
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHH--H
Confidence 6788985 678888999999999999999998876532 1111 245678999999999999999999986 8
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHH
Q 001675 221 VFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 300 (1033)
Q Consensus 221 ~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~ 300 (1033)
++..||+.|+.+|+.++|... ..|++ +.++++|+|+|++++++++.+||++ +..+|+|.|++.
T Consensus 79 ~l~~wm~~f~~~L~~~~p~l~-~~d~~--e~~~l~kvK~~i~~~~~ly~~kY~e--------------~f~~~l~~fv~~ 141 (370)
T PF08506_consen 79 NLSEWMEIFHKYLTYPNPALE-EDDDD--EPGLLEKVKAWICENLNLYAEKYEE--------------EFEPFLPTFVQA 141 (370)
T ss_dssp THHHHHHHHHHHHH--SGGG--TT-SS--S--HHHHHHHHHHHHHHHHHHH-HH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccC-CCCcc--cccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 999999999999999887432 23333 3556899999999999999999853 124588999999
Q ss_pred HHHHHHhhhCCcccCHHHHHHHHHHHHhhcCChhhhhhh--hhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcC
Q 001675 301 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYD 378 (1033)
Q Consensus 301 ~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~~--~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d 378 (1033)
+|++|.+...+ +..|.++..+++||+++++.+.++..+ ++++.+||.++|+|+|+++++|+|+|++||.||||++.|
T Consensus 142 vw~lL~~~~~~-~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e 220 (370)
T PF08506_consen 142 VWNLLTKISQQ-PKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLE 220 (370)
T ss_dssp HHHHHTC--SS-GGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSC
T ss_pred HHHHHHHhhhc-ccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcc
Confidence 99999885543 446899999999999998877655565 689999999999999999999999999999999999998
Q ss_pred cccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhc-------CC
Q 001675 379 IIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-------TE 451 (1033)
Q Consensus 379 ~~~d~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~-------~~ 451 (1033)
+ +|.+|+|+||.+|+++|++++++.+.+.+++++++++++|.++|.. +|+.||||++++|+++..... .+
T Consensus 221 ~-sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~--~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~ 297 (370)
T PF08506_consen 221 G-SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSN--NWRSKDGALYLIGALASKGSTTKSGVTQTN 297 (370)
T ss_dssp S-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT---HHHHHHHHHHHHHHHBSS--BTTB-S-B-
T ss_pred c-cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcc--cHHHHHHHHHHHHHHHhhhccccCCccccc
Confidence 6 5789999999999999999999999999999999999999888764 999999999999999988632 11
Q ss_pred cchhHHHHHHHHhhcccCC---CCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 001675 452 PYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFAL 524 (1033)
Q Consensus 452 ~~~~~l~~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al 524 (1033)
+ ..++++|+.++|+|+|+ +.+|+||+||||++..|.... +++.+..+++.++++|++++.+|+.+||.||
T Consensus 298 ~-~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l--~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 298 E-LVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL--PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp T-TS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred c-cccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2 34899999999999998 568999999999999998864 5678999999999999999999999999986
No 10
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=7.3e-41 Score=375.11 Aligned_cols=404 Identities=20% Similarity=0.353 Sum_probs=303.0
Q ss_pred ccchhhcchHHHHHHHHHHhhh---hchhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHH
Q 001675 533 DLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 609 (1033)
Q Consensus 533 ~~~~l~p~l~~il~~L~~ll~~---~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 609 (1033)
.++++.|++++++++|+.++.. .++|.++.++..++..+++.+.|++..++++|..++..+.++ | +++.
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kN----P----snP~ 87 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKN----P----SNPR 87 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-----------HH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----C----CCcc
Confidence 5789999999999999999977 556667777777777789999999999999999988777664 4 3789
Q ss_pred HHHHHHHHHHHHHHhcc-CChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCC--CCCHhHHHHHHHHHHH
Q 001675 610 AAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEA 686 (1033)
Q Consensus 610 ~~~~~l~~i~~li~~~~-~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~--~isp~l~~l~~~l~~~ 686 (1033)
+.|++||+++.+++.+. .+|+.+.++|+.++|++..||++|+.+|++|+|||++.++...+ .+++.++++||.++..
T Consensus 88 FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p 167 (435)
T PF03378_consen 88 FNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSP 167 (435)
T ss_dssp HHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSG
T ss_pred hhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCc
Confidence 99999999999999974 67888899999999999999999999999999999999998765 7888999999999876
Q ss_pred hhhhH-hhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC-chhc
Q 001675 687 LADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHW 764 (1033)
Q Consensus 687 ~~~~~-~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~-~~~~ 764 (1033)
. -|. .++++.++++|.+|+.+++..+... ++++.++++|+++++++..+.+ |++|+++|+++++.. +++|
T Consensus 168 ~-lWe~~gniPalvrLL~a~i~k~~~~i~~~---~~l~~iLgvFQkLi~sk~~D~~----gF~LL~~iv~~~p~~~l~~y 239 (435)
T PF03378_consen 168 A-LWERRGNIPALVRLLQAYIKKDPSFIVAN---NQLEPILGVFQKLIASKANDHY----GFDLLESIVENLPPEALEPY 239 (435)
T ss_dssp G-GGGSTTTHHHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTCHHH----HHHHHHHHHHHS-HHHHGGG
T ss_pred c-hhccCCCcCcHHHHHHHHHHhCchhhcch---hhHHHHHHHHHHHHCCCCcchH----HHHHHHHHHHHCCHHHHHHH
Confidence 3 355 6799999999999999999998754 7899999999999998876654 999999999999874 8999
Q ss_pred hHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhChHHHHHHHHhh--CchHHHH-HHHHHHHHHHHhhcccccccchh
Q 001675 765 VEPYLRITVERLRRAEKS-YLKCLLVQVIADALYYNSSLTLSILHKL--GVATEVF-NLWFQMLQQVKKNGLRVNFKREH 840 (1033)
Q Consensus 765 l~~il~~~~~~l~~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~L~~~--~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~ 840 (1033)
++.|+..+++||+++++. +++..++.+...+..++|+.+++.++++ |++.+++ +.|++..+ ++.+..
T Consensus 240 l~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~---------k~~~~~ 310 (435)
T PF03378_consen 240 LKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQ---------KVSGPI 310 (435)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGG---------G--SHH
T ss_pred HHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchh---------hcCCcc
Confidence 999999999999986644 4555555555555678999999999987 7788888 67999988 999999
Q ss_pred hhHHHHHHHHHHhccccCCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCC
Q 001675 841 DKKVCCLGLTSLLALTADQLPG--EALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMG 918 (1033)
Q Consensus 841 d~Kl~~lal~~ll~~~~~~l~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~ 918 (1033)
|||++++|++++|+..+..+.+ ..|+.++.++++++..-+ +.. . +++ | +. .++
T Consensus 311 erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~--------~~~-~-~~~--------e-~~----~~~-- 365 (435)
T PF03378_consen 311 ERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPP--------EAS-A-ADE--------E-DF----IDE-- 365 (435)
T ss_dssp HHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTS--------TT--S--------------S----------
T ss_pred hhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCc--------ccc-c-ccc--------c-cc----ccc--
Confidence 9999999999999876432222 279999999999888211 100 0 000 0 00 000
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhChHHHHHHhcC-
Q 001675 919 VDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEV-DPFVFFVDTIKVMQASDPLRFQNLTQT- 996 (1033)
Q Consensus 919 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dd~~~~~pl~~v-d~~~~~~~~l~~~~~~~~~~~~~l~~~- 996 (1033)
+|.++.+|+.. +.+|+.++.+. .||+.+| |+..|+++.|+++.+++|+++..+++.
T Consensus 366 -~d~~~~gy~~~-fs~L~~a~~~~--------------------~Dp~~~i~d~~~~~~~~L~~~~~~~~G~~~~~i~~~ 423 (435)
T PF03378_consen 366 -EDVEDIGYQVS-FSKLAFAGKKP--------------------RDPLPEIPDPKQYLAQSLSKLSQAHPGKIPPLIQQQ 423 (435)
T ss_dssp --------TT-G-GG--GGG--------------------------S-TTTTCHHHHHHHHHHHHHHHTTSSHHHHHGGG
T ss_pred -ccchhcccchh-hHHHHhCCCCC--------------------CCCCCCCCCHHHHHHHHHHHHHHhCCCchHHHHHhh
Confidence 11122367666 57887754433 2799999 999999999999999999999887776
Q ss_pred CCHHHHHHHHHH
Q 001675 997 LEFQYQALANGV 1008 (1033)
Q Consensus 997 l~~~~~~~l~~~ 1008 (1033)
|+++.|+.|+++
T Consensus 424 l~~~~~~~L~~y 435 (435)
T PF03378_consen 424 LPPEAQQALQQY 435 (435)
T ss_dssp S-HHHHHHHHH-
T ss_pred CCHHHHHHhccC
Confidence 999999999875
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-35 Score=325.73 Aligned_cols=672 Identities=16% Similarity=0.248 Sum_probs=436.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhC--CCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCC---CcCC
Q 001675 5 SLALILQGALSPNPEERKAAEHSLNQFQY--TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP---NEQQ 79 (1033)
Q Consensus 5 ~L~~~L~~tls~d~~~r~~AE~~L~~~~~--~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~---~~~~ 79 (1033)
++.++|..++|||+++|++||.+|++++. -|+|+..|.+++.+.+.+...|++|++.|||.+..+=...+. .+|.
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 46788888999999999999999999986 689999999999999889999999999999999754322111 2455
Q ss_pred CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhchh-h---HHHHHHHHHHHHHHh
Q 001675 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-Q---VYGALFVLRILSRKY 154 (1033)
Q Consensus 80 ~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~-~---~~~~L~~L~~i~k~~ 154 (1033)
.++.+.|.+||++++..|..+.+..++..+.+++.||+.+.| ++||+|+..++....+. . -.++|.++.-+|...
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 799999999999999999999999999999999999999999 78999999999998776 2 378999999999775
Q ss_pred ccCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhc
Q 001675 155 EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE 234 (1033)
Q Consensus 155 ~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l~ 234 (1033)
.. + .+ ....--.|..+++.....+ .+..++..++++++.+.-+.- ..|.++..-.-.|+ ++.
T Consensus 162 ~p---e---vl---~~~sN~iLtaIv~gmrk~e----~s~~vRLaa~~aL~nsLef~~-~nF~~E~ern~iMq----vvc 223 (859)
T KOG1241|consen 162 DP---E---VL---EQQSNDILTAIVQGMRKEE----TSAAVRLAALNALYNSLEFTK-ANFNNEMERNYIMQ----VVC 223 (859)
T ss_pred CH---H---HH---HHHHhHHHHHHHhhccccC----CchhHHHHHHHHHHHHHHHHH-HhhccHhhhceeee----eee
Confidence 31 1 12 2222233444444433322 234567788888876542210 01111111111221 111
Q ss_pred CCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCccc
Q 001675 235 RPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYL 314 (1033)
Q Consensus 235 ~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (1033)
. ..+..| .+++..++.||+++..-|- +|.+.+. .+.++...+.... ..
T Consensus 224 E----atq~~d---------~~i~~aa~~ClvkIm~LyY----------~~m~~yM---~~alfaitl~amk------s~ 271 (859)
T KOG1241|consen 224 E----ATQSPD---------EEIQVAAFQCLVKIMSLYY----------EFMEPYM---EQALFAITLAAMK------SD 271 (859)
T ss_pred e----cccCCc---------HHHHHHHHHHHHHHHHHHH----------HHHHHHH---HHHHHHHHHHHHc------CC
Confidence 1 111222 3677889999999998762 1211111 1112222222211 12
Q ss_pred CHHHHHHHHHHHHhhcCChhh-----------------hhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhc
Q 001675 315 PDRVTNLILQYLSNSISKNSM-----------------YNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGY 377 (1033)
Q Consensus 315 ~d~~~~~~l~fl~~~~~~~~~-----------------~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~ 377 (1033)
.|.+..++++||+++++.+.- +.+.+..+..++ |.+ ++.... .+.
T Consensus 272 ~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~-----P~L------l~~L~k-------qde 333 (859)
T KOG1241|consen 272 NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVV-----PVL------LELLTK-------QDE 333 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhh-----HHH------HHHHHh-------CCC
Confidence 579999999999988764311 001111122222 322 122211 111
Q ss_pred CcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHH
Q 001675 378 DIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 457 (1033)
Q Consensus 378 d~~~d~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l 457 (1033)
+..+|.|+|..||+.+|.-+++.-+..+++.+++|+.+.+++ ++|+.||++.+++|++-++-.... ...-+
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~--------pdwr~reaavmAFGSIl~gp~~~~-Lt~iV 404 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN--------PDWRNREAAVMAFGSILEGPEPDK-LTPIV 404 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC--------cchhhhhHHHHHHHhhhcCCchhh-hhHHH
Confidence 222457999999999999999999999999999999998865 389999999999999988754321 11111
Q ss_pred HHHHHHhhcccCCCCcccchHHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--
Q 001675 458 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-- 532 (1033)
Q Consensus 458 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~---~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~-- 532 (1033)
.+ ..+.++....++.-++|..+.|.+|+.++.. ..++.++...++.++..|+|. +.|..-+|+|+.++.+...
T Consensus 405 ~q-alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 405 IQ-ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred hh-hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHh
Confidence 12 1233444456778889999999999998753 224467888889999888874 5688899999999997763
Q ss_pred -----ccchhhcchHHHHHHHHHHhhhhc-hh-----hHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCC
Q 001675 533 -----DLNEIRPILPQLLDEFFKLMNEVE-NE-----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADE 601 (1033)
Q Consensus 533 -----~~~~l~p~l~~il~~L~~ll~~~~-~~-----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~ 601 (1033)
..+...|+.+.|+..|++.....+ ++ ....+|..+|....+.+.|....+......-+.+.+++...+-
T Consensus 483 ~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~ 562 (859)
T KOG1241|consen 483 AVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSL 562 (859)
T ss_pred ccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 112345899999999999887654 33 2567888888887777666544433332222222333111111
Q ss_pred CCCChhHH-HHHHHHHHHHHHHHhccC-ChHHHHHHHhhHHHHHHHHccc-CchhHHHHHHHHHHHhhhcC-CCCCHhHH
Q 001675 602 DADDPGAL-AAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTT-DGQEVFEEVLEIVSYMTFFS-PTISLEMW 677 (1033)
Q Consensus 602 ~~~~~~~~-~~~~~l~~i~~li~~~~~-~~~~~~~l~~~~~p~i~~il~~-~~~~~~~~~l~ll~~l~~~~-~~isp~l~ 677 (1033)
+ |..+-. .-.-+..++..+++.++. .++ ..+.++-.+-.+++. .+.-.-+++|--+++++.+. +.+...|-
T Consensus 563 ~-dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~----~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~ 637 (859)
T KOG1241|consen 563 A-DRAQLNELQSLLCNTLQSIIRKVGSDIRE----VSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP 637 (859)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHccccchh----HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH
Confidence 0 001111 122445678888888753 333 344555555556655 34455678887777777653 44444555
Q ss_pred HHHHHHHHHhhhh--------HhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHH
Q 001675 678 SLWPLMMEALADW--------AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKL 749 (1033)
Q Consensus 678 ~l~~~l~~~~~~~--------~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~l 749 (1033)
.+.|.+...+++. ..+.+.++.+.|+. .|+ +|...+.+.+.+.|+++...-+-.-..+.+
T Consensus 638 ~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~-------~i~-----py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 638 AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED-------DIL-----PYCDELMTVLVQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-------hhh-----hHHHHHHHHHHHHccCccccccccchHHHH
Confidence 5566555444211 12233344444432 344 677778888888887776555445567888
Q ss_pred HHHHHHHcccCchhchHHHHHHH
Q 001675 750 IEVVFQNCKGQVDHWVEPYLRIT 772 (1033)
Q Consensus 750 l~~il~~~~~~~~~~l~~il~~~ 772 (1033)
...|....+.++.+|+..++..+
T Consensus 706 FgDIAlaIg~~F~~Yl~~vm~ll 728 (859)
T KOG1241|consen 706 FGDIALAIGADFEPYLEMVMPLL 728 (859)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888888888888887776655
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-30 Score=277.37 Aligned_cols=690 Identities=14% Similarity=0.179 Sum_probs=410.0
Q ss_pred CChHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhCC--CChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCC-C-
Q 001675 1 MDLPSLALILQG-ALSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHE-P- 75 (1033)
Q Consensus 1 Md~~~L~~~L~~-tls~d~~~r~~AE~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~-~- 75 (1033)
|...++.++.+. .+|||+++|..||.+|.++++. ..|...|.+.+.+....+..|..|++.|||.+..+-.... +
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 566667766654 4999999999999999999863 3688899999999888899999999999999975433211 1
Q ss_pred -CcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhchh----hHHHHHHHHHH
Q 001675 76 -NEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLRI 149 (1033)
Q Consensus 76 -~~~~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~----~~~~~L~~L~~ 149 (1033)
..|..+++|.|++||.+.+++|.++.+.+.+..+.+++.||+.+.| +.||+|+..++.....+ ....+|.++..
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHH
Confidence 2455699999999999999999999999999999999999999999 67999999999988766 24567777777
Q ss_pred HHHHhccCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHH-hhhhcCCcccCChhhHHHHHHH
Q 001675 150 LSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWS-SIYLEIPKQLLDPNVFNAWMIL 228 (1033)
Q Consensus 150 i~k~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~-l~~~~lp~~~~~~~~l~~w~~~ 228 (1033)
.|..-. + ..++...--.|..++.....++. ...++..++|++.. +... -..|..++.-..+|+.
T Consensus 161 ~ces~~---P------e~li~~sN~il~aiv~ga~k~et----~~avRLaaL~aL~dsl~fv--~~nf~~E~erNy~mqv 225 (858)
T COG5215 161 HCESEA---P------EDLIQMSNVILFAIVMGALKNET----TSAVRLAALKALMDSLMFV--QGNFCYEEERNYFMQV 225 (858)
T ss_pred HhhccC---H------HHHHHHhhHHHHHHHHhhcccCc----hHHHHHHHHHHHHHHHHHH--HHhhcchhhhchhhee
Confidence 775421 1 23333334455556655544332 34568888999876 4321 1112222333334433
Q ss_pred HHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 001675 229 FLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRI 308 (1033)
Q Consensus 229 ~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~ 308 (1033)
....- +..| ..+...++.|++++..-|-+ |++.+++..+-.+...
T Consensus 226 vceat--------q~~d---------~e~q~aafgCl~kim~LyY~------------------fm~~ymE~aL~alt~~ 270 (858)
T COG5215 226 VCEAT--------QGND---------EELQHAAFGCLNKIMMLYYK------------------FMQSYMENALAALTGR 270 (858)
T ss_pred eehhc--------cCCc---------HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence 22211 1122 24667799999999886521 2334444443333221
Q ss_pred hCCcccCHHHHHHHHHHHHhhcCChhhhhh----h-----hhh-H-HHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhc
Q 001675 309 RVGGYLPDRVTNLILQYLSNSISKNSMYNL----L-----QPR-L-DVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGY 377 (1033)
Q Consensus 309 ~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~----~-----~~~-l-~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~ 377 (1033)
. -+...|++..++++||+++++.+.--.. + ..| + ..-+.. |+|.+ +.+.+ ++..
T Consensus 271 ~-mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~d-vlP~l------L~LL~-------~q~e 335 (858)
T COG5215 271 F-MKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVAD-VLPEL------LSLLE-------KQGE 335 (858)
T ss_pred H-hcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHH-HHHHH------HHHHH-------hcCC
Confidence 0 0112589999999999988764321111 0 000 0 000111 11221 11111 1112
Q ss_pred CcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHH
Q 001675 378 DIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 457 (1033)
Q Consensus 378 d~~~d~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l 457 (1033)
|..+|.|++..+|..+|.-.++..|..++.+++.|+.+.+++ ++|+.+|++..++|++-++-.+. ....+
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~--------~~w~nreaavmAfGSvm~gp~~~--~lT~~ 405 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS--------ESWANREAAVMAFGSVMHGPCED--CLTKI 405 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC--------chhhhHHHHHHHhhhhhcCccHH--HHHhh
Confidence 223467999999999999999988889999999999998864 48999999999999988763221 01111
Q ss_pred HHHHHHhhcccCCCCcccchHHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--
Q 001675 458 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-- 532 (1033)
Q Consensus 458 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~---~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~-- 532 (1033)
.+-..+-+..+..++.-+++.++.|++|++++.. .++..++....+..+..|.|. +.+....++++.++.++..
T Consensus 406 V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a 484 (858)
T COG5215 406 VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKA 484 (858)
T ss_pred HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhh
Confidence 1111222333444677899999999999998742 233345566666666666553 3456677889999988753
Q ss_pred ---ccchhhcchHHHHHHHHHHhhhhchhh-----HHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhcc--CCCC
Q 001675 533 ---DLNEIRPILPQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAE--ADED 602 (1033)
Q Consensus 533 ---~~~~l~p~l~~il~~L~~ll~~~~~~~-----l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~--~d~~ 602 (1033)
.++.+.||-+.|+..|++-.+...+|. ...+|.+++...++.+.|....+......-+-+.++-.+ -+-+
T Consensus 485 ~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~e 564 (858)
T COG5215 485 VREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATE 564 (858)
T ss_pred hccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 356688999999999998887766653 678899999888777766443333322221111111000 0000
Q ss_pred CCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCch-hHHHHHHHHHHHhhhcC-CCCCHhHHHHH
Q 001675 603 ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS-PTISLEMWSLW 680 (1033)
Q Consensus 603 ~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~-~~~~~~l~ll~~l~~~~-~~isp~l~~l~ 680 (1033)
|.-...-....++..+..|++.-+.+ ....+..++.++-.+++.... -..++++--++.+.... +.+....-.+.
T Consensus 565 D~~~~~elqSN~~~vl~aiir~~~~~---ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fi 641 (858)
T COG5215 565 DQLLVEELQSNYIGVLEAIIRTRRRD---IEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFI 641 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---cccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00001112234445555555554321 223445555555556654432 33445554444443211 11111111222
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC
Q 001675 681 PLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (1033)
Q Consensus 681 ~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~ 760 (1033)
|.+.+.+...+.......+.++.-....-...|. .|...+...+.+.++++.....-.-....+...|..+.+..
T Consensus 642 Pyl~~aln~~d~~v~~~avglvgdlantl~~df~-----~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~ 716 (858)
T COG5215 642 PYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN-----IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGAN 716 (858)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhh
Confidence 2222222111111111111111111111111233 45666666667777655433222344567777888888777
Q ss_pred chhchHHHHHHHHH
Q 001675 761 VDHWVEPYLRITVE 774 (1033)
Q Consensus 761 ~~~~l~~il~~~~~ 774 (1033)
+.+|+..|+....+
T Consensus 717 F~~YL~~im~L~qq 730 (858)
T COG5215 717 FESYLDMIMMLFQQ 730 (858)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877665533
No 13
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.94 E-value=4.3e-22 Score=215.76 Aligned_cols=712 Identities=13% Similarity=0.156 Sum_probs=400.1
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCC
Q 001675 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1033)
Q Consensus 2 d~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l 81 (1033)
|.+-+-++.+....+|...+++|++-|.+++..|+.|...-+|+.+.. -++.+..|...|-..|++.|+ .+
T Consensus 12 diallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-~pqskyiALs~LdklIttkWk--------ll 82 (1053)
T COG5101 12 DIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSK-LPQSKYIALSLLDKLITTKWK--------LL 82 (1053)
T ss_pred CHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-CcchhhhHHHHHHHHHHhhhh--------hC
Confidence 456677888888999999999999999999999999999999998754 668899999999999999998 59
Q ss_pred ChhHHHHHHHHHHHHHhc--CChHHH-------HHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh-h----HHHHHHHH
Q 001675 82 SQVDKDMVRDHILVFVAQ--VPPLLR-------VQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q----VYGALFVL 147 (1033)
Q Consensus 82 ~~~~k~~ir~~Ll~~l~~--~~~~ir-------~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~-~----~~~~L~~L 147 (1033)
|++.|..||.-+++.+.+ ++..+| +.+-.++..|++.|||.+||+++|++++.-+++ . ....|..|
T Consensus 83 p~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklL 162 (1053)
T COG5101 83 PEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLL 162 (1053)
T ss_pred CcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHh
Confidence 999999999999999853 444444 456778889999999999999999999988776 2 24455666
Q ss_pred HHHHHHhccCC-ccc-chHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHh-HHhhhhcCCcccCChhhHH-
Q 001675 148 RILSRKYEFKS-DEE-RTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIF-WSSIYLEIPKQLLDPNVFN- 223 (1033)
Q Consensus 148 ~~i~k~~~~~~-~~~-~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~-~~l~~~~lp~~~~~~~~l~- 223 (1033)
++-+=.|+... ... ...+..-+..-||.++.++.+.+..+. ...++...+..+ +.|.+..+.-.+++ +.+.
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~----~~SLi~ATLesllrfl~wiPl~yIfeT-nIieL 237 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSR----DESLIEATLESLLRFLEWIPLDYIFET-NIIEL 237 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHhhCchhHHHHH-HHHHH
Confidence 65554443100 001 234556666778888888888886532 122344444444 33333322211110 1111
Q ss_pred -------------HHHHHHHHHhcC-CCCCCCCCCChhhhhhcchhHHHHH----HH-HHHHHHHHHhCCCCCCChhhHH
Q 001675 224 -------------AWMILFLNVLER-PVPSEGEPADPEQRKSWGWWKVKKW----TV-HILNRLYTRFGDLKLQNPENRA 284 (1033)
Q Consensus 224 -------------~w~~~~~~~l~~-~~p~~~~~~d~~~~~~~~~~k~kk~----~~-~~l~~l~~~y~~~~~~~~~~~~ 284 (1033)
.-+..+..+.+. ..| +..++-+|.......+-.. .. -.-.++.+.||.... .-+.
T Consensus 238 v~~~f~s~pd~r~~tl~CLtEi~~L~~~p---q~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~---neq~ 311 (1053)
T COG5101 238 VLEHFNSMPDTRVATLSCLTEIVDLGRHP---QENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDK---NEQI 311 (1053)
T ss_pred HHHHhccCCchhHHHHHHHHHHHhhccCc---ccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccCh---hHHH
Confidence 111112222221 122 1112212211111111000 00 011245666766432 1122
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhh-------CCccc-------CHHHHHHHHHHHHhhcCCh-------------h---
Q 001675 285 FAQMFQKNYAGKILECHLNLLNRIR-------VGGYL-------PDRVTNLILQYLSNSISKN-------------S--- 334 (1033)
Q Consensus 285 f~~~f~~~~~~~~~~~~~~~l~~~~-------~~~~~-------~d~~~~~~l~fl~~~~~~~-------------~--- 334 (1033)
|.... ..++..+...+...+++.. ...|+ ...+...++++|...+..- +
T Consensus 312 Fvq~L-A~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ 390 (1053)
T COG5101 312 FVQKL-AQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQ 390 (1053)
T ss_pred HHHHH-HHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchh
Confidence 22221 2244455555555554310 01121 2367788999998765310 0
Q ss_pred -------------h--hhhhh-----hhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHH
Q 001675 335 -------------M--YNLLQ-----PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV 394 (1033)
Q Consensus 335 -------------~--~~~~~-----~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll 394 (1033)
. .+.++ ..+.+ +..+++.+| .+||+.-.-++|-.|-||+...++ |.-+.-.....+|
T Consensus 391 ls~~s~~istnpn~~~~~pLrkhiY~~ilsq-LrlvlienM-vrPEEVliVendegEivRefvket-DtI~lYksmRevL 467 (1053)
T COG5101 391 LSVGSQAISTNPNQDSTKPLRKHIYIGILSQ-LRLVLIENM-VRPEEVLIVENDEGEIVREFVKET-DTIELYKSMREVL 467 (1053)
T ss_pred ccccchhccCCcchhcccchHHHHHHHHHHH-HHHHHHHcC-CCcceEEEEECCCcHHHHHHhccc-cHhHHHHHHhhHH
Confidence 0 00011 12334 344555666 578887778899999999876654 3445556666677
Q ss_pred HHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhccc------
Q 001675 395 SELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPE------ 468 (1033)
Q Consensus 395 ~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~------ 468 (1033)
..|+.-.-.++-..+.+-+...+ .+..++|......++|+|+++..+.+... ..|+.+.+--.
T Consensus 468 vyLthL~v~Dte~~mi~Klarq~------dg~EWsw~nlNtLcWAIGSISGamsE~~E-----krF~VnviKdLL~Lcem 536 (1053)
T COG5101 468 VYLTHLIVDDTEKYMIGKLARQL------DGKEWSWNNLNTLCWAIGSISGAMSEVNE-----KRFFVNVIKDLLALCEM 536 (1053)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHh------cCCccchhhHhHHHHHHhcccchhhhHHH-----HHHHHHHHHHHHHHHHH
Confidence 77765443333222232222222 12347899999999999999999876432 23343332222
Q ss_pred --CCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc------ccchhhcc
Q 001675 469 --FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------DLNEIRPI 540 (1033)
Q Consensus 469 --l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~------~~~~l~p~ 540 (1033)
.++....+.+...+++|||..+.-.+-..++.++..+...|+..+-.|+..||.++-.+++.|+ ....-.||
T Consensus 537 KrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpF 616 (1053)
T COG5101 537 KRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPF 616 (1053)
T ss_pred hhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcH
Confidence 2345678888999999999886533336789999999999998888999999999999999985 34445799
Q ss_pred hHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHH
Q 001675 541 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEM-----APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 615 (1033)
Q Consensus 541 l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i-----~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 615 (1033)
+..|+..|-+.-.+.+....+...+++.-..++.- .....++++....++..+...+..++ +.+ +--
T Consensus 617 I~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~-----~~L---~d~ 688 (1053)
T COG5101 617 IVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENI-----NRL---SDT 688 (1053)
T ss_pred HHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhh-----hhh---cch
Confidence 99999998877766655544444444433332211 11233444444444444333222221 000 000
Q ss_pred HHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCC---CCCHhHHHHHHHHHHHhhhhHh
Q 001675 616 RAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP---TISLEMWSLWPLMMEALADWAI 692 (1033)
Q Consensus 616 ~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~---~isp~l~~l~~~l~~~~~~~~~ 692 (1033)
.+..-+...+..+...+.++...++|.+...-- .....+-.+...++..+...+ .-+|....+-
T Consensus 689 ~tvki~an~~ktnVa~ctslg~~fyPq~~~~y~-~ml~ly~avs~~Is~~vaaeg~iatktp~vrglr------------ 755 (1053)
T COG5101 689 MTVKIDANKMKTNVAKCTSLGYRFYPQTCSSYC-IMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLR------------ 755 (1053)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccchHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccccCccccchH------------
Confidence 111111111223334444555555665443210 011111112222222221111 1122222111
Q ss_pred hhhhhhhhhhhhhhccCcc-cccccCCcchHHHHHHHH-HHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHH
Q 001675 693 DFFPNILVPLDNYISRGTA-HFLTCKEPDYQQSLWSMV-SSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLR 770 (1033)
Q Consensus 693 ~~~~~~~~~L~~~i~~~~~-~~l~~~~~~~~~~il~i~-~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~ 770 (1033)
..-.+++.++..||++..+ .++++ ..++++++.+ ...+++ ..+.--..+..+..+++++.+.-+-.-.+-++.
T Consensus 756 tiKkEIlkLv~tyIska~dl~~V~n---~lv~~l~eaVl~DY~nN--vPdardaevLnl~ttiV~~v~~~i~~~~~l~l~ 830 (1053)
T COG5101 756 TIKKEILKLVATYISKARDLKFVQN---DLVNMLCEAVLFDYKNN--VPDARDAEVLNLGTTIVRNVESVIYLQRELFLI 830 (1053)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHhcC--CCccccHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 1335667778888887754 23332 4556665543 222322 122212347889999999987544444455555
Q ss_pred HHHH
Q 001675 771 ITVE 774 (1033)
Q Consensus 771 ~~~~ 774 (1033)
.++.
T Consensus 831 svf~ 834 (1053)
T COG5101 831 SVFI 834 (1053)
T ss_pred HHHh
Confidence 5543
No 14
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.3e-17 Score=186.03 Aligned_cols=637 Identities=15% Similarity=0.205 Sum_probs=392.0
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCC
Q 001675 3 LPSLALILQGALSP-NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1033)
Q Consensus 3 ~~~L~~~L~~tls~-d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l 81 (1033)
.+++.+++..++++ +.+....++++|.+.+..|..|..-.+++..+. ...+|.++|+.|.-.|.++|.. +
T Consensus 6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k-~~evqyFGAltL~~ki~~~~e~--------~ 76 (982)
T KOG2022|consen 6 IATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDK-SSEVQYFGALTLHDKINTRWEE--------C 76 (982)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCc-hhHHHHHhHHHHHHHHHhhhcc--------C
Confidence 46788888888886 888889999999999999998888888887754 4577999999999999999985 9
Q ss_pred ChhHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh--h-H---HHH---HHHHHH
Q 001675 82 SQVDKDMVRDHILVFVA---QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--Q-V---YGA---LFVLRI 149 (1033)
Q Consensus 82 ~~~~k~~ir~~Ll~~l~---~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~-~---~~~---L~~L~~ 149 (1033)
|+++...++..++..+. ..++.|-+.++.+++..+-+.-|+.||+-+.+++..++.+ . + .++ |..|.-
T Consensus 77 ~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~ 156 (982)
T KOG2022|consen 77 PANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSF 156 (982)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhcc
Confidence 99999999999998873 2456677777888888888888999999999999999875 1 1 122 233322
Q ss_pred HHHHhccC------CcccchHHHHHHHHHHHHHHHHHHHHhhccCCC---hhHHHHHHHHHHHhHHhhh-hcCCcccCCh
Q 001675 150 LSRKYEFK------SDEERTPVYRIVEETFHHLLNIFNRLVQIVNPS---LEVADLIKLICKIFWSSIY-LEIPKQLLDP 219 (1033)
Q Consensus 150 i~k~~~~~------~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~---~~~~~~~~~~lki~~~l~~-~~lp~~~~~~ 219 (1033)
+-.+++.. ++..|..+.......++ ++...+..+.++ .........++||+...+. ..+|.
T Consensus 157 ~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~----l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~----- 227 (982)
T KOG2022|consen 157 MPAEFQHVTLPLTRRSVLRGELAKFSENVIS----LLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG----- 227 (982)
T ss_pred CcHhhhhccchhHHHHHHHHHHHHHHHHHhH----HHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc-----
Confidence 22233221 12223344333444444 344444333322 1223445667888877664 44542
Q ss_pred hhHHHHHHHHHHHhcCCCCCC------CC-------CCCh------------hh--hh-hcchhHHHHHHHHHHHHHHHH
Q 001675 220 NVFNAWMILFLNVLERPVPSE------GE-------PADP------------EQ--RK-SWGWWKVKKWTVHILNRLYTR 271 (1033)
Q Consensus 220 ~~l~~w~~~~~~~l~~~~p~~------~~-------~~d~------------~~--~~-~~~~~k~kk~~~~~l~~l~~~ 271 (1033)
.....|.+..+.++....-+. .+ ..|+ .. +. ..-+|+.--|.+...++....
T Consensus 228 ~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~ 307 (982)
T KOG2022|consen 228 MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQE 307 (982)
T ss_pred ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555554211000 00 0000 00 10 112334444444444444444
Q ss_pred hCCCCCCChhhHHH---HHHHHHHhHHHHHHHH-----H-------HHHHh--hhCCc-ccCHHHHHHHHHHHHhhcCC-
Q 001675 272 FGDLKLQNPENRAF---AQMFQKNYAGKILECH-----L-------NLLNR--IRVGG-YLPDRVTNLILQYLSNSISK- 332 (1033)
Q Consensus 272 y~~~~~~~~~~~~f---~~~f~~~~~~~~~~~~-----~-------~~l~~--~~~~~-~~~d~~~~~~l~fl~~~~~~- 332 (1033)
..+++-..++...| ...+..+++|.++... + +.+.. ..+|. ++.+.+-...+.||.+....
T Consensus 308 ~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei 387 (982)
T KOG2022|consen 308 EENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEI 387 (982)
T ss_pred HhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHH
Confidence 43433212222222 2234466777777655 1 11111 11232 33445556778888876321
Q ss_pred -------hhhh-hhh-hhhHHHHHHHHhhhcccC-ChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHHHHHHhcc
Q 001675 333 -------NSMY-NLL-QPRLDVLLFEIVFPLMCF-NDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG 402 (1033)
Q Consensus 333 -------~~~~-~~~-~~~l~~li~~~i~p~l~l-~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~L~~~~~ 402 (1033)
-+.+ ..+ ++-...+++..+ |.+.+ +++..-.|+.|.- +.+.+-|..-.+++.+.-+-.|
T Consensus 388 ~~~~~e~~~~~~~i~~~qIy~qlvei~l-~K~~~Ps~e~~~~W~S~s~----------e~F~~YR~diSD~~~~~Y~ilg 456 (982)
T KOG2022|consen 388 MQTINETQQIKKQILSQQIYAQLVEILL-KKLALPSKEIWLSWSSDSR----------EQFESYRKDISDLLMSSYSILG 456 (982)
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHH-HHhcCCCHHHhccCCcchH----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 0111 122 355666666555 55555 4555566776532 1244568888888888877777
Q ss_pred cchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCC--CCcccchHHH
Q 001675 403 KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS--SPVGHLRAKA 480 (1033)
Q Consensus 403 ~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~--~~~~~lr~ra 480 (1033)
...+..+...+.+++.....+| ..|...|++++.+.++++.+.... ...+...+. +.+..+ ..+|-+-+.+
T Consensus 457 d~ll~~L~~~l~q~~aa~d~~p---~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~--~~asik~S~~n~ql~~Ts 529 (982)
T KOG2022|consen 457 DGLLDFLIDTLEQALAAGDEDP---DSLNRTEACIFQFQSVAEYLGETE--STWIPRLFE--TSASIKLSAPNPQLLSTS 529 (982)
T ss_pred HHHHHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHH--hccccccccCChhHHHHH
Confidence 7777767766666666544333 479999999999999999987643 223333332 223333 2377888899
Q ss_pred HHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhh--hchh
Q 001675 481 AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--VENE 558 (1033)
Q Consensus 481 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~~~~ 558 (1033)
.-.+|-++.+.-.+|-++...++.+++.|+.+. -...|...++.+|+.| ++.+.||+.+++..+-..++. ....
T Consensus 530 s~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C--~~~L~py~d~~~a~~~e~l~~~~~~~S 605 (982)
T KOG2022|consen 530 SDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETC--PESLDPYADQFSAVCYEVLNKSNAKDS 605 (982)
T ss_pred HHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhh--hhhCchHHHHHHHHHHHHhcccccCch
Confidence 999999998765667788999999999997554 3457888899999998 699999999999988887765 2222
Q ss_pred h---HHHHHHHHHHhhc-ccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccC-C-----
Q 001675 559 D---LVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-L----- 628 (1033)
Q Consensus 559 ~---l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~-~----- 628 (1033)
+ ++..++-++.+.. +++..|...|+..+...+......+.+++ .+.....-.+.+++++..++-. .
T Consensus 606 ~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~----e~~l~~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 606 DRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQ----ENHLRIAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred HHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHHHHHHhccCCCCccccc
Confidence 3 4444444454443 55666888888877776655544444333 3445555667889999888731 1
Q ss_pred --hH---------HHHHHHhhHHHHHHHHccc--CchhHHHHHHHHHHHhhhc-CCCC-CHhHHHHHHHH
Q 001675 629 --PH---------LFVQIEPTLLPIMRRMLTT--DGQEVFEEVLEIVSYMTFF-SPTI-SLEMWSLWPLM 683 (1033)
Q Consensus 629 --~~---------~~~~l~~~~~p~i~~il~~--~~~~~~~~~l~ll~~l~~~-~~~i-sp~l~~l~~~l 683 (1033)
|. ....+.+.++|+|+++++. ...++.+-++.+...-+.. .+++ -|.+.++++-+
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi 751 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFI 751 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence 10 2345667889999998763 2335555555444332322 1234 33344555544
No 15
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.4e-11 Score=141.85 Aligned_cols=470 Identities=18% Similarity=0.220 Sum_probs=285.0
Q ss_pred cCCCHHHHHHHHHHHHHhhCC----------CChHHHHHHHHHhcCcChhhhH----HHHHHHHHHHhhcCCCCCCCcCC
Q 001675 14 LSPNPEERKAAEHSLNQFQYT----------PQHLVRLLQIIVDNNCDLSVRQ----VASIHFKNFIAKNWAPHEPNEQQ 79 (1033)
Q Consensus 14 ls~d~~~r~~AE~~L~~~~~~----------p~f~~~Ll~i~~~~~~~~~vRq----~Aai~lKn~I~~~W~~~~~~~~~ 79 (1033)
.++|+++|+-|--.++.+... ..--+.|+.++.... ...+|. ..|-..||-+...|.
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~-~~~vr~k~~dviAeia~~~l~e~WP-------- 117 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSET-EPSVRHKLADVIAEIARNDLPEKWP-------- 117 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccchH--------
Confidence 358888998887777765431 123456666666643 456665 446777888877775
Q ss_pred CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCch----hHHHHHHHHhchh--hH-HHHHHHHHHHHH
Q 001675 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWP----HLLDWVKHNLQDQ--QV-YGALFVLRILSR 152 (1033)
Q Consensus 80 ~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp----~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k 152 (1033)
.+-+.|+++..+++...|-..-.+++.+. ..|++.-. ++++-+.+.++++ .+ ..+++++..++.
T Consensus 118 --------ell~~L~q~~~S~~~~~rE~al~il~s~~-~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 118 --------ELLQFLFQSTKSPNPSLRESALLILSSLP-ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred --------HHHHHHHHHhcCCCcchhHHHHHHHHhhh-hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 36677888888999999988888888876 45666554 4555555555544 33 467788888887
Q ss_pred HhccCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHH
Q 001675 153 KYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNV 232 (1033)
Q Consensus 153 ~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~ 232 (1033)
..+. . ......+..++|.+++++......++ ......++++|..+.. ..|..+. ..+...+++.+.+
T Consensus 189 ~~~~----~-~~~~~~~~~llP~~l~vl~~~i~~~d-----~~~a~~~l~~l~El~e-~~pk~l~--~~l~~ii~~~l~I 255 (1075)
T KOG2171|consen 189 YLEN----N-KSEVDKFRDLLPSLLNVLQEVIQDGD-----DDAAKSALEALIELLE-SEPKLLR--PHLSQIIQFSLEI 255 (1075)
T ss_pred Hhcc----c-hHHHHHHHHHhHHHHHHhHhhhhccc-----hHHHHHHHHHHHHHHh-hchHHHH--HHHHHHHHHHHHH
Confidence 6531 1 11223445778988888888876543 2234556666655532 2244443 6677777777777
Q ss_pred hcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHh-hhCC
Q 001675 233 LERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR-IRVG 311 (1033)
Q Consensus 233 l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~-~~~~ 311 (1033)
.... ..|+ ..|-.++.++..+.+. -|... +. ..++.++++..++....- ....
T Consensus 256 a~n~------~l~~---------~~R~~ALe~ivs~~e~--Ap~~~----k~-----~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 256 AKNK------ELEN---------SIRHLALEFLVSLSEY--APAMC----KK-----LALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred hhcc------cccH---------HHHHHHHHHHHHHHHh--hHHHh----hh-----chhhhccHHHHHHHhcCCcccch
Confidence 6542 2233 3445677887766553 22110 00 011333333333332211 0001
Q ss_pred cc------------cCHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCc
Q 001675 312 GY------------LPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDI 379 (1033)
Q Consensus 312 ~~------------~~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~ 379 (1033)
.| .+.....++++++...+..+.....+.+++.. | .-
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~---------~---------------------l~- 358 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEA---------M---------------------LQ- 358 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH---------H---------------------hc-
Confidence 11 23467788899988776544321111111111 1 00
Q ss_pred ccccCCHHHHHHHHHHHHHHhccc---chHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhH
Q 001675 380 IEDLYSPRTASMDFVSELVRKRGK---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSE 456 (1033)
Q Consensus 380 ~~d~~s~R~aa~~ll~~L~~~~~~---~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~ 456 (1033)
+..|.-|+||.-.|..+++.-++ ..++.+++.+...|+ +| ..+.|.||+.++|.++..+. +.
T Consensus 359 -S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~----Dp----hprVr~AA~naigQ~stdl~------p~ 423 (1075)
T KOG2171|consen 359 -STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN----DP----HPRVRYAALNAIGQMSTDLQ------PE 423 (1075)
T ss_pred -CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC----CC----CHHHHHHHHHHHHhhhhhhc------HH
Confidence 12467799999888888775443 245566666555554 33 67999999999999998653 35
Q ss_pred HHHHHHHhhcccCC----C-CcccchHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHH
Q 001675 457 LERMLVQHVFPEFS----S-PVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGL-RDPELPVRVDSVFALRSFV 528 (1033)
Q Consensus 457 l~~~l~~~v~p~l~----~-~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~L-~d~~~~Vr~~Aa~al~~~~ 528 (1033)
+.......|.|.|- + .++.+.+.|+-.+=.|.+...++. .++..+++..+..| ++..+.|+..|+.||....
T Consensus 424 iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 424 IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 66666666666653 2 467777777777766654321221 34444555333333 4566779999999999999
Q ss_pred HhccccchhhcchHHHHHHHHHHhhhhchhhH----HHHHHH---HHHhh-cccccccHHHHHHHHHH
Q 001675 529 EACRDLNEIRPILPQLLDEFFKLMNEVENEDL----VFTLET---IVDKF-GEEMAPYALGLCQNLAA 588 (1033)
Q Consensus 529 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l----~~~l~~---iv~~~-~~~i~p~~~~l~~~L~~ 588 (1033)
+.. .+.+.||.+.+|..|.+.+...+.+++ -.+|++ +.... ++.+.|++.++++.+..
T Consensus 504 ~AA--~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~ 569 (1075)
T KOG2171|consen 504 DAA--QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLE 569 (1075)
T ss_pred HHH--hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHh
Confidence 984 699999999999999999988764431 233443 33333 36777777777765553
No 16
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.5e-11 Score=136.11 Aligned_cols=500 Identities=15% Similarity=0.239 Sum_probs=278.7
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCC
Q 001675 5 SLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKIS 82 (1033)
Q Consensus 5 ~L~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~ 82 (1033)
.+.|++.++..| |+..|+||-+.+.+++..|..|..+..++...+.++.+|..+...|-..++..++. .+
T Consensus 4 diEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne--------~n 75 (980)
T KOG2021|consen 4 DIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNE--------AN 75 (980)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhcc--------CC
Confidence 566777777665 89999999999999999999999999999887678899999999999998766653 67
Q ss_pred hhHHHHHHHHHHHHHh-----c----CChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh-h---HHHHHHHHHH
Q 001675 83 QVDKDMVRDHILVFVA-----Q----VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q---VYGALFVLRI 149 (1033)
Q Consensus 83 ~~~k~~ir~~Ll~~l~-----~----~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~-~---~~~~L~~L~~ 149 (1033)
..+.+.||..+...+. . .|.-|++.++.+++.+.-.+||..||.++.++...++-+ + +.--+++|..
T Consensus 76 l~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 76 LNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 7899999999998762 2 266799999999999999999999999999999999866 2 2222333333
Q ss_pred ----HHHHhccCCccc-c--hHHHHHH-HHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhh-hhcCCcccC---
Q 001675 150 ----LSRKYEFKSDEE-R--TPVYRIV-EETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSI-YLEIPKQLL--- 217 (1033)
Q Consensus 150 ----i~k~~~~~~~~~-~--~~l~~i~-~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~-~~~lp~~~~--- 217 (1033)
++...-.|+++. + ..++..+ .+-.|.+.+.|-+.+....+. ....+...++.|+.+.+ |.++.-...
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~-~npgl~~~cLdc~g~fVSWIdInLIaNd~f 234 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI-VNPGLINSCLDCIGSFVSWIDINLIANDYF 234 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHhhhhhhhhhhchhH
Confidence 332221233222 1 1222222 334666666666655321111 01345566677776554 333221100
Q ss_pred --------C-hhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHH
Q 001675 218 --------D-PNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQM 288 (1033)
Q Consensus 218 --------~-~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~ 288 (1033)
. ++.-..-.+.++.+++.... + ..|+ ..+..++...+.+|..+.-..+-..|++.
T Consensus 235 ~nLLy~fl~ieelR~aac~cilaiVsKkMk-------P-------~dKL--~lln~L~q~l~lfg~~s~dq~~d~df~e~ 298 (980)
T KOG2021|consen 235 LNLLYKFLNIEELRIAACNCILAIVSKKMK-------P-------MDKL--ALLNMLNQTLELFGYHSADQMDDLDFWES 298 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCC-------h-------hHHH--HHHHHHHHHHHHHhhhccccccCchHHHH
Confidence 0 01111112233333333211 1 1111 12222222222222111000011122222
Q ss_pred HH--------------------------HHhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcC----Chhhhhh
Q 001675 289 FQ--------------------------KNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS----KNSMYNL 338 (1033)
Q Consensus 289 f~--------------------------~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~----~~~~~~~ 338 (1033)
+. .+.+..+++.+--++....+. .|.+-...+.||+..+. .+.....
T Consensus 299 vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e---~ddit~~ifpFlsdyl~~LKkl~~ls~~ 375 (980)
T KOG2021|consen 299 VSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE---FDDITAKIFPFLSDYLAFLKKLKALSSP 375 (980)
T ss_pred HHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc---chhhHHHHHHHHHHHHHHHhhcccccch
Confidence 21 111111111111111110011 12222333344433221 1111112
Q ss_pred hhhhHHHHHHHHhhhcccCChhhHhhhhhC-HHHHHHHhcCcccc-cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHh
Q 001675 339 LQPRLDVLLFEIVFPLMCFNDNDQKLWDED-PHEYVRKGYDIIED-LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGI 416 (1033)
Q Consensus 339 ~~~~l~~li~~~i~p~l~l~~~d~e~we~D-p~efi~~~~d~~~d-~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~ 416 (1033)
-+.++..++.. |+..+|+.+. ..|.+| |. +| .++ +.+.|.-=-.+++++..--++ .++..+.+.
T Consensus 376 qk~~l~~illa-i~kqicydem--y~nddn~tg------~E-eEa~f~e~RkkLk~fqdti~~idps----l~l~~Ir~s 441 (980)
T KOG2021|consen 376 QKVPLHKILLA-IFKQICYDEM--YFNDDNVTG------DE-EEAFFEEVRKKLKNFQDTIVVIDPS----LFLNNIRQS 441 (980)
T ss_pred hhccHHHHHHH-HHHHHhccHH--hhcccCCCC------ch-HHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHH
Confidence 23456665553 4466766443 345555 21 01 111 235666656666666655443 345555555
Q ss_pred hccccCCCCCCCchhhHhHHHHHHHHHHHhhhcC------Ccch-----hHHHHHHHHhhcccCCCCcccchHHHHHHHH
Q 001675 417 FKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT------EPYK-----SELERMLVQHVFPEFSSPVGHLRAKAAWVAG 485 (1033)
Q Consensus 417 l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~------~~~~-----~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 485 (1033)
+++...+.. ..+|..-|.|++.+-.+++.++.. .+.. ..++.++.+.- ....+|+.+.---+..+-
T Consensus 442 lS~al~ns~-e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsq--v~~h~h~lVqLlfmE~iv 518 (980)
T KOG2021|consen 442 LSAALMNSK-EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQ--VLAHDHELVQLLFMELIV 518 (980)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcc--cccCCchHHHHHHHHHHH
Confidence 555433322 248999999999999999987631 1111 12333332221 123578888887788888
Q ss_pred hhhccccCCh-hHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHh
Q 001675 486 QYAHINFSDQ-NNFRKALHSVVSG--LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (1033)
Q Consensus 486 ~~~~~~~~~~-~~~~~~~~~l~~~--L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (1033)
||..+ |..+ +....++.+.+.. |++.+..||..|..-+.+|+... +..+.||+..+++.+-.++
T Consensus 519 RY~kf-f~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL--kkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 519 RYNKF-FSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL--KKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHH-HhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 88764 3322 3333333333322 34567889999999999999874 6889999999999999988
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.7e-10 Score=130.17 Aligned_cols=442 Identities=12% Similarity=0.189 Sum_probs=264.7
Q ss_pred CHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhh------HhhhhhCHHHHHHHhcCcc--cccCCH
Q 001675 315 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND------QKLWDEDPHEYVRKGYDII--EDLYSP 386 (1033)
Q Consensus 315 ~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d------~e~we~Dp~efi~~~~d~~--~d~~s~ 386 (1033)
..++...++..|..++ .-+|+.+++++.+-+..+-+..|. ++.| +|.|..=.+|-+--..+.. -|.+.+
T Consensus 230 d~~i~~aa~~ClvkIm--~LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIM--SLYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3588889999998887 357888999887744433335555 5554 6778754444333111111 122333
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhc
Q 001675 387 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 466 (1033)
Q Consensus 387 R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~ 466 (1033)
++ +.+|-++.++.+++.+.+.|.+...++.+ ++|...-||=-+++..+..+.+. +..++-+|+.+++
T Consensus 307 -p~--------~~~fa~~a~~~v~P~Ll~~L~kqde~~d~-DdWnp~kAAg~CL~l~A~~~~D~--Iv~~Vl~Fiee~i- 373 (859)
T KOG1241|consen 307 -PS--------SKYFARQALQDVVPVLLELLTKQDEDDDD-DDWNPAKAAGVCLMLFAQCVGDD--IVPHVLPFIEENI- 373 (859)
T ss_pred -ch--------hhHHHHHHHhHhhHHHHHHHHhCCCCccc-ccCcHHHHHHHHHHHHHHHhccc--chhhhHHHHHHhc-
Confidence 22 12333445555666666777775544433 57999999988898888876553 4456667766655
Q ss_pred ccCCCCcccchHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchH
Q 001675 467 PEFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (1033)
Q Consensus 467 p~l~~~~~~lr~ra~~~l~~~~~~~~~~~----~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~ 542 (1033)
++++..=|-.|...+|..-+.. ++ ....+.++.+++.+.|+++.||.+|+.+|.++++.....-.-.-+++
T Consensus 374 ---~~pdwr~reaavmAFGSIl~gp--~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~ 448 (859)
T KOG1241|consen 374 ---QNPDWRNREAAVMAFGSILEGP--EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQ 448 (859)
T ss_pred ---CCcchhhhhHHHHHHHhhhcCC--chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhh
Confidence 5677666777777777764422 22 45788889999999999999999999999999998641111123445
Q ss_pred HHHHHHHHHhhh----hchh--hHHHHHHHHHHhh-----cccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHH
Q 001675 543 QLLDEFFKLMNE----VENE--DLVFTLETIVDKF-----GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAA 611 (1033)
Q Consensus 543 ~il~~L~~ll~~----~~~~--~l~~~l~~iv~~~-----~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~ 611 (1033)
.+++.+..-+++ ..+. ....+.+.+-+.. ++..+||...|+..|.. .....+.+ ....+
T Consensus 449 ~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~----~tdr~dgn------qsNLR 518 (859)
T KOG1241|consen 449 SKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK----VTDRADGN------QSNLR 518 (859)
T ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh----hccccccc------hhhHH
Confidence 555555544433 2221 1233333332222 12456888888888876 22222222 22356
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHhhHHHHHH----HHcc-----cCchhHHHHHHHHHHHh----hhcC-CCCCHhHH
Q 001675 612 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMR----RMLT-----TDGQEVFEEVLEIVSYM----TFFS-PTISLEMW 677 (1033)
Q Consensus 612 ~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~----~il~-----~~~~~~~~~~l~ll~~l----~~~~-~~isp~l~ 677 (1033)
...++++.++|.... ..++. +...+.+++. .+++ .+.-+-..+.-+++++. ++.. +.+.+..-
T Consensus 519 ~AAYeALmElIk~st--~~vy~-~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d 595 (859)
T KOG1241|consen 519 SAAYEALMELIKNST--DDVYP-MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD 595 (859)
T ss_pred HHHHHHHHHHHHcCc--HHHHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Confidence 688999999998752 22222 2233333333 2333 22222233333344433 3322 23333444
Q ss_pred HHHHHHHHHhhhhHhhhh-hhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCc-cCchhHHHHHHHH
Q 001675 678 SLWPLMMEALADWAIDFF-PNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGD-IEPAPKLIEVVFQ 755 (1033)
Q Consensus 678 ~l~~~l~~~~~~~~~~~~-~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~-~~~a~~ll~~il~ 755 (1033)
+++..++..++......+ .+.+-.+...+..-..+|. .|++.+.....+-|++. .++- +..|..++..+.+
T Consensus 596 ~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~-----kym~~f~pyL~~gL~n~--~e~qVc~~aVglVgdl~r 668 (859)
T KOG1241|consen 596 QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA-----KYMPAFKPYLLMGLSNF--QEYQVCAAAVGLVGDLAR 668 (859)
T ss_pred HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH-----HHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHH
Confidence 455555555543222222 3344444444443344566 67888888777777422 2332 4567899999999
Q ss_pred HcccCchhchHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhh
Q 001675 756 NCKGQVDHWVEPYLRITVERLRRA-EKSYLKCLLVQVIADALY 797 (1033)
Q Consensus 756 ~~~~~~~~~l~~il~~~~~~l~~~-~~~~~~~~~l~v~~~~~~ 797 (1033)
.++..+-||...+++.+++.|++. ..+.+|..++.+|.-...
T Consensus 669 aL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAl 711 (859)
T KOG1241|consen 669 ALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIAL 711 (859)
T ss_pred HHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHH
Confidence 999999999999999999999984 477888888888877653
No 18
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.4e-11 Score=145.80 Aligned_cols=171 Identities=16% Similarity=0.310 Sum_probs=132.3
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCC
Q 001675 4 PSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1033)
Q Consensus 4 ~~L~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l 81 (1033)
.++..++..+++| ++..|.+|.+.+.+++..|+.+.....|+... ....+|.+|.-+|-|.|+.+|+. +
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-~~~~~k~f~Lqlle~vik~~W~~--------~ 80 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-TNPILKYFALQLLENVIKFRWNS--------L 80 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-CCchhheeeHHHHHHHHHHhccc--------C
Confidence 3567777777775 78899999999999999999999888888875 46789999999999999999984 9
Q ss_pred ChhHHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh--hH---HHHHHHH
Q 001675 82 SQVDKDMVRDHILVFVAQ---------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QV---YGALFVL 147 (1033)
Q Consensus 82 ~~~~k~~ir~~Ll~~l~~---------~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~---~~~L~~L 147 (1033)
|.++|..+|..++..+.. +.+.++.+++.++..|++.|||+.||++++++.+....+ .- ...+..|
T Consensus 81 ~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 81 PVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLL 160 (1041)
T ss_pred CccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHH
Confidence 999999999999998732 235688999999999999999999999999999998876 22 3444445
Q ss_pred HHHHHHhccCCcc---cc-hHHHHHHHHHHHHHHHHHHHHhh
Q 001675 148 RILSRKYEFKSDE---ER-TPVYRIVEETFHHLLNIFNRLVQ 185 (1033)
Q Consensus 148 ~~i~k~~~~~~~~---~~-~~l~~i~~~~~p~l~~l~~~~~~ 185 (1033)
.+-+=.| .+.. .+ ..++..+...|..+..++.....
T Consensus 161 sEdvf~~--ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~ 200 (1041)
T KOG2020|consen 161 SEEVFDF--SSSELTQQKIIILKNLLENEFQQIFTLCSYIKE 200 (1041)
T ss_pred HHHHhcc--cchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4444333 2221 12 23455555567777777776544
No 19
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.7e-08 Score=117.94 Aligned_cols=541 Identities=16% Similarity=0.224 Sum_probs=257.8
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh------hHHHHHHHHHHHHHHhccCC---------cccchH
Q 001675 100 VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ------QVYGALFVLRILSRKYEFKS---------DEERTP 164 (1033)
Q Consensus 100 ~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~------~~~~~L~~L~~i~k~~~~~~---------~~~~~~ 164 (1033)
+++..|+..-.-+..+ ++=|+++..+.+.+.++ +.-+++..=+.|.|.++.+. +++|..
T Consensus 16 ~d~~~R~~AE~~L~q~------~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~ 89 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQL------EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAV 89 (1010)
T ss_pred CChHHHHHHHHHHHHh------hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHH
Confidence 4577776655444443 35678999999988776 34577777788888776441 111221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHH-HHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCCCCCCC
Q 001675 165 VYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIK-LICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEP 243 (1033)
Q Consensus 165 l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~-~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l~~~~p~~~~~ 243 (1033)
+ -..+.+.+.+ . .++.| ..--|++..+..+.|+.. +.+..|...+ ++.+
T Consensus 90 i---renIl~~iv~-------~-------p~~iRvql~~~l~~Ii~~D~p~~W---p~l~d~i~~~---Lqs~------- 139 (1010)
T KOG1991|consen 90 I---RENILETIVQ-------V-------PELIRVQLTACLNTIIKADYPEQW---PGLLDKIKNL---LQSQ------- 139 (1010)
T ss_pred H---HHHHHHHHHh-------C-------chHHHHHHHHHHHHHHhcCCcccc---hhHHHHHHHH---hcCc-------
Confidence 1 1222332221 1 11222 222334445566777443 3344444333 3321
Q ss_pred CChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCHHHHHHHH
Q 001675 244 ADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLIL 323 (1033)
Q Consensus 244 ~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~l 323 (1033)
|. ...--++-++..++..|.=.+ ..+..+....+ ..+.|.+++.+.+++... .+-+-.+...++
T Consensus 140 -~~---------~~vy~aLl~l~qL~k~ye~k~--~eeR~~l~~~v-~~~fP~il~~~~~ll~~~---s~~s~el~klIl 203 (1010)
T KOG1991|consen 140 -DA---------NHVYGALLCLYQLFKTYEWKK--DEERQPLGEAV-EELFPDILQIFNGLLSQE---SYQSVELQKLIL 203 (1010)
T ss_pred -ch---------hhHHHHHHHHHHHHHHHhhcc--ccccccHHHHH-HHHHHHHHHHHHhhcccc---chHHHHHHHHHH
Confidence 10 111235667777887773111 12222333322 446688888877776552 233445556666
Q ss_pred HHHHhhcCChhhhhhhhh-hH---HHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHHHHHH
Q 001675 324 QYLSNSISKNSMYNLLQP-RL---DVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVR 399 (1033)
Q Consensus 324 ~fl~~~~~~~~~~~~~~~-~l---~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~L~~ 399 (1033)
..+.+++-..--..++.+ .+ .+|+..++-. ....|. ...||+. |.. . -+|-.+.-|...+-.+++
T Consensus 204 Kifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~r--pvP~E~---l~~d~e~--R~~-~---~wwK~KKWa~~~L~Rlf~ 272 (1010)
T KOG1991|consen 204 KIFKSLIYYELPLELSAPETFTSWMELFLSILNR--PVPVEV---LSLDPED--RSS-W---PWWKCKKWALHILNRLFE 272 (1010)
T ss_pred HHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcC--CCChhc---ccCChhh--ccc-c---cchhhHHHHHHHHHHHHH
Confidence 655554422111112211 11 2233333321 122222 2335543 211 1 256778888888888888
Q ss_pred hcccch-----------------HHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCc---chhHHHH
Q 001675 400 KRGKEN-----------------LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP---YKSELER 459 (1033)
Q Consensus 400 ~~~~~~-----------------~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~---~~~~l~~ 459 (1033)
+||+.. .+.+++.....+.++.+ .-|..-+..++++..+...+....- +.+++.-
T Consensus 273 Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~-----~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ 347 (1010)
T KOG1991|consen 273 RYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ-----QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQV 347 (1010)
T ss_pred HhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHH
Confidence 876521 12222322233333321 1355566666666655554432211 2346666
Q ss_pred HHHHhhcccCCC-----------Ccccch---------------------------------------------------
Q 001675 460 MLVQHVFPEFSS-----------PVGHLR--------------------------------------------------- 477 (1033)
Q Consensus 460 ~l~~~v~p~l~~-----------~~~~lr--------------------------------------------------- 477 (1033)
++..+|+|.+.- |+-++|
T Consensus 348 ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~ 427 (1010)
T KOG1991|consen 348 IIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASP 427 (1010)
T ss_pred HHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCC
Confidence 666666776541 222222
Q ss_pred --------HHHHHHHHhhhccccCChh----HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc-cccchhhcchHHH
Q 001675 478 --------AKAAWVAGQYAHINFSDQN----NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC-RDLNEIRPILPQL 544 (1033)
Q Consensus 478 --------~ra~~~l~~~~~~~~~~~~----~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~-~~~~~l~p~l~~i 544 (1033)
--|+.++|..++..-++.. .=.-+.+.++..++++---.|..||..+..|++.. +.+. .+..+
T Consensus 428 ~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~----~l~~a 503 (1010)
T KOG1991|consen 428 PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPN----NLSEA 503 (1010)
T ss_pred CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChH----HHHHH
Confidence 2233333333322111110 00111223333334444446666777777666432 1112 23344
Q ss_pred HHHHHHHhhhhchh-----hHHHHHHHHHHhhc---ccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHH
Q 001675 545 LDEFFKLMNEVENE-----DLVFTLETIVDKFG---EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (1033)
Q Consensus 545 l~~L~~ll~~~~~~-----~l~~~l~~iv~~~~---~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (1033)
++...+.|.+ +++ +...+|++++.... +.+.|+.+.+++.|.. +.++-+.| .+-.
T Consensus 504 le~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~----L~ne~End------------~Lt~ 566 (1010)
T KOG1991|consen 504 LELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK----LSNEVEND------------DLTN 566 (1010)
T ss_pred HHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH----HHHhcchh------------HHHH
Confidence 4444444442 222 34567888886654 4588888888888875 33332211 2335
Q ss_pred HHHHHHHhccC-ChHHHHHHHhhHHHHHHHHccc--Cc----hhHHHHHHHHH---HHhhhcCCCCCHhHHHHH----HH
Q 001675 617 AISTILESVSR-LPHLFVQIEPTLLPIMRRMLTT--DG----QEVFEEVLEIV---SYMTFFSPTISLEMWSLW----PL 682 (1033)
Q Consensus 617 ~i~~li~~~~~-~~~~~~~l~~~~~p~i~~il~~--~~----~~~~~~~l~ll---~~l~~~~~~isp~l~~l~----~~ 682 (1033)
+|.++|...++ -......+.+.+...+-.+++. +. .+=.--+..++ ++++..-...+.-+.++- |.
T Consensus 567 vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v 646 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56666666532 1222344556666666666653 11 11111233333 333322222222333443 44
Q ss_pred HHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcC
Q 001675 683 MMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD 735 (1033)
Q Consensus 683 l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~ 735 (1033)
+-.++++...++.++++.++.++-...++ +. +.+..+++++..++.+
T Consensus 647 i~~iL~~~i~dfyeE~~ei~~~~t~~~~~-Is-----p~mW~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 647 IGFILKNDITDFYEELLEIVSSLTFLSKE-IS-----PIMWGLLELILEVFQD 693 (1010)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhhhhcc-cC-----HHHHHHHHHHHHHHhh
Confidence 44445666788999998888776544432 21 4556666666666643
No 20
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.6e-10 Score=125.85 Aligned_cols=499 Identities=15% Similarity=0.218 Sum_probs=283.0
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhHHHHHHHHHHHHHh---
Q 001675 22 KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVA--- 98 (1033)
Q Consensus 22 ~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~k~~ir~~Ll~~l~--- 98 (1033)
..|-.+|.++++.+..|..+-.|+... .+...-.+|+-.+||+|++..+. +|+..-...|+.+++.+.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-~~~~~~~FaaqTlr~Ki~~~F~~--------Lp~~~~~slrdsl~thl~~l~ 72 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-CDVEALLFAAQTLRNKIQYDFSE--------LPPLTHASLRDSLITHLKELH 72 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhhHHh--------cCcchhHHHHHHHHHHHHHHH
Confidence 368899999999999999999988774 78999999999999999999974 888888899998887763
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh--h---HHHHHHHHHHHHHHhccC-CcccchHHHHHHHHH
Q 001675 99 QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--Q---VYGALFVLRILSRKYEFK-SDEERTPVYRIVEET 172 (1033)
Q Consensus 99 ~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~---~~~~L~~L~~i~k~~~~~-~~~~~~~l~~i~~~~ 172 (1033)
+.+..|++|++.+|+.+|-+ +| +|.+-++++++.+++. . ....|.++-+-.+..+.. +...|..+..-+..-
T Consensus 73 ~~~~~i~tQL~vavA~Lal~-~~-~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 73 DHPDVIRTQLAVAVAALALH-MP-EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQ 150 (559)
T ss_pred hCCchHHHHHHHHHHHHHHH-hH-hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHh
Confidence 33349999999999999966 45 7999888888888766 2 223333333333333211 111223332222333
Q ss_pred HHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhh-cCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhh---
Q 001675 173 FHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL-EIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQ--- 248 (1033)
Q Consensus 173 ~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~-~lp~~~~~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~--- 248 (1033)
.+.++..+..++...+ ......+..++|||.+.... .+|..+. .+..+.+......++.. .. ..+..+
T Consensus 151 ~~~~L~~l~~lLe~~~--l~~~~~l~~Vl~~l~SWl~~~~~~~d~v--~a~~pLi~l~F~sl~~~---~l-he~At~cic 222 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSD--LKSSDDLEQVLRCLGSWLRLHVFPPDQV--LASFPLITLAFRSLSDD---EL-HEEATECIC 222 (559)
T ss_pred HHHHHHHHHHHHhhcC--CChhhHHHHHHHHHhhhhhhccCCHHHH--HhhhHHHHHHHHHcccc---hh-hHHHHHHHH
Confidence 4455555555555322 22255678888999876552 3332110 11112222222222210 00 000000
Q ss_pred --------hhhc-chhHHHHH-------------------HHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHH
Q 001675 249 --------RKSW-GWWKVKKW-------------------TVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 300 (1033)
Q Consensus 249 --------~~~~-~~~k~kk~-------------------~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~ 300 (1033)
++.. ++-.+.-. -...++|+|..-|+.. ...... -...++..
T Consensus 223 ~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf---------~~~i~~-np~~~l~~ 292 (559)
T KOG2081|consen 223 ALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAF---------VVLIST-NPEEFLRI 292 (559)
T ss_pred HHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHH---------HHHHhh-CCCcchhH
Confidence 0000 00000000 0011122222111100 000000 00011111
Q ss_pred HHHHHHhhhCCcccCHHHHHHHHHHHHhhcCC------hhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHH
Q 001675 301 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISK------NSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVR 374 (1033)
Q Consensus 301 ~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~------~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~ 374 (1033)
+-.++.-.... ..+++...+.||...-+. ...+..++|++..++.-+ .+..++.+ |.+..-+
T Consensus 293 vellLl~~~h~---~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l-~~h~qlp~-~~~~l~E------- 360 (559)
T KOG2081|consen 293 VELLLLVAGHN---DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLL-KRHVQLPP-DQFDLPE------- 360 (559)
T ss_pred HHHHHHhccCC---chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHH-HHHccCCC-ccccCcc-------
Confidence 11111111111 237888999999876432 234456789999988754 47777766 3222211
Q ss_pred HhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcch
Q 001675 375 KGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYK 454 (1033)
Q Consensus 375 ~~~d~~~d~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~ 454 (1033)
+.+++...|...++++++++.-.|+... +..+...+.+ + +..|..-||+++.+..++..+....+
T Consensus 361 ----e~~~f~~fR~~v~dvl~Dv~~iigs~e~---lk~~~~~l~e----~--~~~We~~EAaLF~l~~~~~~~~~~e~-- 425 (559)
T KOG2081|consen 361 ----EESEFFEFRLKVGDVLKDVAFIIGSDEC---LKQMYIRLKE----N--NASWEEVEAALFILRAVAKNVSPEEN-- 425 (559)
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHhCcHHH---HHHHHHHHcc----C--CCchHHHHHHHHHHHHHhccCCcccc--
Confidence 1223556788899999999887776432 2222223332 2 23899999999999999988765432
Q ss_pred hHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc
Q 001675 455 SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL 534 (1033)
Q Consensus 455 ~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~ 534 (1033)
..+...+. .+. .+.-+.| +|+.++.++|.|+++.-+.++.+..++..+...++... ....|+.|+..++..+ .
T Consensus 426 ~i~pevl~-~i~-nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c--~ 498 (559)
T KOG2081|consen 426 TIMPEVLK-LIC-NLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC--R 498 (559)
T ss_pred chHHHHHH-HHh-CCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH--H
Confidence 12333322 222 1222344 99999999999999876677888888888888887655 7788999999999887 3
Q ss_pred chhhcchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhc-ccccccHHHHH
Q 001675 535 NEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG-EEMAPYALGLC 583 (1033)
Q Consensus 535 ~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~-~~i~p~~~~l~ 583 (1033)
....++++.+..-+..+....-+++ +...+..++.+.. .++.+...+++
T Consensus 499 ~~~~~l~~~~~~l~~~l~~~~~~~e~a~l~~~~s~i~~~lp~~k~~~~~~el~ 551 (559)
T KOG2081|consen 499 VQMTCLIPSLLELIRSLDSTQINEEAACLLQGISLIISNLPAHKAKIALEELC 551 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHhhhhHHHHHHh
Confidence 5556666666655554444322222 3444444555543 23333333333
No 21
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.34 E-value=2.7e-12 Score=109.74 Aligned_cols=75 Identities=36% Similarity=0.602 Sum_probs=66.4
Q ss_pred HHHHHHHhhCC-CChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhHHHHHHHHHHHHHh
Q 001675 24 AEHSLNQFQYT-PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVA 98 (1033)
Q Consensus 24 AE~~L~~~~~~-p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~k~~ir~~Ll~~l~ 98 (1033)
||++|++++.+ |||+..|++|+.+++.+..+|++|+++|||.|+++|+......+..+|+++|..||+.|+++|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 9999999999988888999999999999999999998322222345999999999999999874
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=9.5e-08 Score=106.63 Aligned_cols=674 Identities=14% Similarity=0.150 Sum_probs=362.2
Q ss_pred CCCHHHHHHHHHHHHHh-hC-CCChHH--------HHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChh
Q 001675 15 SPNPEERKAAEHSLNQF-QY-TPQHLV--------RLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQV 84 (1033)
Q Consensus 15 s~d~~~r~~AE~~L~~~-~~-~p~f~~--------~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~ 84 (1033)
+-|-.+|..|.--|+.- .. .+.+.+ .+++-+.+. ++-+|--.+|..-..+. .|.-.
T Consensus 59 ~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~--~~lIr~tvGivITTI~s-~~~~~----------- 124 (885)
T KOG2023|consen 59 SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDA--SPLIRATVGIVITTIAS-TGGLQ----------- 124 (885)
T ss_pred ccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCc--hHHHHhhhhheeeeeec-ccccc-----------
Confidence 44556788888888843 22 222222 233333332 45788777766544433 33211
Q ss_pred HHHHHHHHHHHHHhcCChHHH-------HHHHHHHHHHHHhhCCCC-chhHHHHHHHHhchh--hH-HHHHHHHHHHHHH
Q 001675 85 DKDMVRDHILVFVAQVPPLLR-------VQLGECLKTIIHADYPEQ-WPHLLDWVKHNLQDQ--QV-YGALFVLRILSRK 153 (1033)
Q Consensus 85 ~k~~ir~~Ll~~l~~~~~~ir-------~~la~~i~~Ia~~d~P~~-Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~ 153 (1033)
....+-..|.++|.+++.... ..+++=.+.+...|++.+ -.-++|..++.++++ .+ --|+.|+++++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 112355667788866553333 334444455555666633 224889999998877 33 3578888887732
Q ss_pred hccCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHh
Q 001675 154 YEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVL 233 (1033)
Q Consensus 154 ~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l 233 (1033)
....+..-+..+...++. +.+ ++..++++.+|+.|..+.... |+.+. .++...++.++...
T Consensus 205 -------~~qal~~~iD~Fle~lFa----lan-----D~~~eVRk~vC~alv~Llevr-~dkl~--phl~~IveyML~~t 265 (885)
T KOG2023|consen 205 -------QTQALYVHIDKFLEILFA----LAN-----DEDPEVRKNVCRALVFLLEVR-PDKLV--PHLDNIVEYMLQRT 265 (885)
T ss_pred -------CcHHHHHHHHHHHHHHHH----Hcc-----CCCHHHHHHHHHHHHHHHHhc-HHhcc--cchHHHHHHHHHHc
Confidence 111222222333322222 222 334789999999998876543 33332 45666666665544
Q ss_pred cCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHH----------
Q 001675 234 ERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLN---------- 303 (1033)
Q Consensus 234 ~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~---------- 303 (1033)
+. .|++ +--.+++....+.+. | .++....+|++.++...++
T Consensus 266 qd--------~dE~---------VALEACEFwla~aeq---p---------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 266 QD--------VDEN---------VALEACEFWLALAEQ---P---------ICKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred cC--------cchh---------HHHHHHHHHHHHhcC---c---------CcHHHHHHHHHHHHHHHHccCccccccHH
Confidence 32 2222 222355544444442 1 1122333344444443322
Q ss_pred HHHhhhCCc-------------------------------------------ccCHHHHHHHHHHHHhhcCChhhhhhhh
Q 001675 304 LLNRIRVGG-------------------------------------------YLPDRVTNLILQYLSNSISKNSMYNLLQ 340 (1033)
Q Consensus 304 ~l~~~~~~~-------------------------------------------~~~d~~~~~~l~fl~~~~~~~~~~~~~~ 340 (1033)
++.+..... |.-.++-..+++.++++
T Consensus 317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv----------- 385 (885)
T KOG2023|consen 317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV----------- 385 (885)
T ss_pred HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh-----------
Confidence 122100000 11112222223333222
Q ss_pred hhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHhh
Q 001675 341 PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG---KENLQKFIQFIVGIF 417 (1033)
Q Consensus 341 ~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~L~~~~~---~~~~~~l~~~i~~~l 417 (1033)
+..=+..+++|.+. +.. +.+.|-.|.|+.-.+.++++.-- -+.++.+.+|+.+.|
T Consensus 386 --f~~elL~~l~PlLk------------------~~L--~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L 443 (885)
T KOG2023|consen 386 --FGDELLPILLPLLK------------------EHL--SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLL 443 (885)
T ss_pred --hHHHHHHHHHHHHH------------------HHc--CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHh
Confidence 21112233445431 111 12356678888888888887422 245667888888887
Q ss_pred ccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCC---CCcccchHHHHHHHHhhhccccCC
Q 001675 418 KRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSD 494 (1033)
Q Consensus 418 ~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~~~~ 494 (1033)
..- +...|--.++.++..+..+..... ..+|...+.+.++ +++..++-.||-.+.-+.+-- -+
T Consensus 444 ~DK--------kplVRsITCWTLsRys~wv~~~~~-----~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A-~~ 509 (885)
T KOG2023|consen 444 DDK--------KPLVRSITCWTLSRYSKWVVQDSR-----DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA-GE 509 (885)
T ss_pred ccC--------ccceeeeeeeeHhhhhhhHhcCCh-----HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc-cc
Confidence 642 445555566667766666543321 1222332222222 678889999999888776521 11
Q ss_pred h--hHHHHHHHHHHhcCC---CCCCchHHHHHHHHHHHHHhc-cccchhhcchHHHHHHHHHHhhhhchh--hHHHHHHH
Q 001675 495 Q--NNFRKALHSVVSGLR---DPELPVRVDSVFALRSFVEAC-RDLNEIRPILPQLLDEFFKLMNEVENE--DLVFTLET 566 (1033)
Q Consensus 495 ~--~~~~~~~~~l~~~L~---d~~~~Vr~~Aa~al~~~~~~~-~~~~~l~p~l~~il~~L~~ll~~~~~~--~l~~~l~~ 566 (1033)
+ +++..++..++.+++ ..++.+-+-|..++..-+.+. ..+.+++-.+|+++++.-.+.++ +.+ .+..++.+
T Consensus 510 eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~-DKdLfPLLEClSs 588 (885)
T KOG2023|consen 510 ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS-DKDLFPLLECLSS 588 (885)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc-cchHHHHHHHHHH
Confidence 1 577888888887775 468888878877777666432 24566777788888886554432 222 37889999
Q ss_pred HHHhhcccccccHHHHHHHHHHHHHHHHh---hccCCCCC-CChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHH
Q 001675 567 IVDKFGEEMAPYALGLCQNLAAAFWRCMN---TAEADEDA-DDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPI 642 (1033)
Q Consensus 567 iv~~~~~~i~p~~~~l~~~L~~~~~~~~~---~~~~d~~~-~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~ 642 (1033)
++...+..+.||+..+.++-+..+.+..+ ....++.. .-++. +..-.++.++-+++.++.+-+-+. ....+..+
T Consensus 589 ia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkd-fiI~sLDL~SGLaegLg~~ie~Lv-a~snl~~l 666 (885)
T KOG2023|consen 589 IASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKD-FIIVSLDLLSGLAEGLGSHIEPLV-AQSNLLDL 666 (885)
T ss_pred HHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcc-eEEEeHHHHhHHHHHhhhchHHHh-hhccHHHH
Confidence 99999999999998887766654443221 11111110 11122 222346777777777765432221 12346777
Q ss_pred HHHHcccCchhHHHHHHHHHHHhhhcC-CCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhh-ccCcccccccCCcc
Q 001675 643 MRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYI-SRGTAHFLTCKEPD 720 (1033)
Q Consensus 643 i~~il~~~~~~~~~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i-~~~~~~~l~~~~~~ 720 (1033)
+-.|+.....+.-..+|.++.-+++.. ..+-|.+-.++|.+..-+.........+.+-.+.-.. ..|. .+..
T Consensus 667 ll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~------~~~~ 740 (885)
T KOG2023|consen 667 LLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGL------KMKQ 740 (885)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhch------hhhh
Confidence 888888888899999999999999875 4567777777776654432222222222222222211 1111 1124
Q ss_pred hHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhCh
Q 001675 721 YQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNS 800 (1033)
Q Consensus 721 ~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~ 800 (1033)
++..++.-+-..++.+...-.=.....-.+..+-..+|..+.|+++.+++--+.++.+-....-+.+...=+|..+-.||
T Consensus 741 ~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp 820 (885)
T KOG2023|consen 741 YVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNP 820 (885)
T ss_pred HHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCc
Confidence 55555554444444331110000001111222334456678899999999999999864444444444445667777788
Q ss_pred HHHHHH
Q 001675 801 SLTLSI 806 (1033)
Q Consensus 801 ~~~l~~ 806 (1033)
..++..
T Consensus 821 ~~vv~~ 826 (885)
T KOG2023|consen 821 SGVVSS 826 (885)
T ss_pred hhhhhh
Confidence 766543
No 23
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.29 E-value=4.1e-07 Score=99.84 Aligned_cols=454 Identities=13% Similarity=0.135 Sum_probs=263.3
Q ss_pred CHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhh-----HhhhhhCHHHHHHHhcCcccccCCHHHH
Q 001675 315 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND-----QKLWDEDPHEYVRKGYDIIEDLYSPRTA 389 (1033)
Q Consensus 315 ~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d-----~e~we~Dp~efi~~~~d~~~d~~s~R~a 389 (1033)
...+...++-.+..++ .-+|+.+++++++-+..+....|.-+.++ +|-|..=.+|-+.-+++ +.+-|..-
T Consensus 234 d~e~q~aafgCl~kim--~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e---~~~~pe~p 308 (858)
T COG5215 234 DEELQHAAFGCLNKIM--MLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEME---DKYLPEVP 308 (858)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHH---HhhcccCc
Confidence 3567777777777765 34678888888887776665655443333 56675544443332222 11111000
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccC
Q 001675 390 SMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF 469 (1033)
Q Consensus 390 a~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l 469 (1033)
+.+ ..++..--+++++.++ .+|.+...++.+ ++|...-||--++...+....++ +..++-.|+. ..+
T Consensus 309 ~qn--~~fa~aav~dvlP~lL----~LL~~q~ed~~~-DdWn~smaA~sCLqlfaq~~gd~--i~~pVl~FvE----qni 375 (858)
T COG5215 309 AQN--HGFARAAVADVLPELL----SLLEKQGEDYYG-DDWNPSMAASSCLQLFAQLKGDK--IMRPVLGFVE----QNI 375 (858)
T ss_pred hhh--cchHHHHHHHHHHHHH----HHHHhcCCCccc-cccchhhhHHHHHHHHHHHhhhH--hHHHHHHHHH----Hhc
Confidence 000 0000000022344444 455554444432 58999888888888877765443 2223444444 445
Q ss_pred CCCcccchHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhc--chHH
Q 001675 470 SSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP--ILPQ 543 (1033)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~----~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p--~l~~ 543 (1033)
++++..=|-.|...+|..-+-. +. ....+.+|.+.+.+.|+.+-|+..+|.|+..+.++. +..+.| |++.
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp--~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl~~ 451 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGP--CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHLVL 451 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCc--cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccccccH
Confidence 6666666777777776653321 22 357888999999999999999999999999999875 344443 4444
Q ss_pred HHHHHH-HHhhh---hchh--hHHHHHHHHHHhh---cccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHH
Q 001675 544 LLDEFF-KLMNE---VENE--DLVFTLETIVDKF---GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGC 614 (1033)
Q Consensus 544 il~~L~-~ll~~---~~~~--~l~~~l~~iv~~~---~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 614 (1033)
..+.++ .+++. .-++ ......+.+.... ..-+.|+...|+..|+..-.+ ..|+ ...+.+.
T Consensus 452 ~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~-----~~Ne------~n~R~s~ 520 (858)
T COG5215 452 EVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL-----ALNE------SNLRVSL 520 (858)
T ss_pred HHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh-----hccc------hhHHHHH
Confidence 444433 22221 1122 2333444443333 334677888888888763222 1232 2345688
Q ss_pred HHHHHHHHHhccC-ChHHHHHHHhhHHHHHHHHcc-------cC----chhHHHHHHHHHHHhhhcC-CCCCHhHHHHHH
Q 001675 615 LRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLT-------TD----GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWP 681 (1033)
Q Consensus 615 l~~i~~li~~~~~-~~~~~~~l~~~~~p~i~~il~-------~~----~~~~~~~~l~ll~~l~~~~-~~isp~l~~l~~ 681 (1033)
++++++++....+ ..++...+...++.-+..+++ .+ ..++....+.++..+++.. +.+.+.-.+++.
T Consensus 521 fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~ 600 (858)
T COG5215 521 FSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLME 600 (858)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 9999999998743 234444455555444444433 22 2355666777888888755 334333233444
Q ss_pred HHHHHhhhhH-hhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC
Q 001675 682 LMMEALADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (1033)
Q Consensus 682 ~l~~~~~~~~-~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~ 760 (1033)
.++..+++.. .-...++.-.+.+....-.++|- .|.+.+.....+.++.. +..-...|..++..+...++..
T Consensus 601 Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe-----~y~~~fiPyl~~aln~~--d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 601 LFIRILESTKPTTAFGDVYTAISALSTSLEERFE-----QYASKFIPYLTRALNCT--DRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHhcch--hHHHHHHHHHHHHHHHHHhhhh
Confidence 4444443321 22334444445444333334454 57777777777777432 2222355788889999889988
Q ss_pred chhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhChHHHHHHHH
Q 001675 761 VDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILH 808 (1033)
Q Consensus 761 ~~~~l~~il~~~~~~l~~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~ 808 (1033)
+.+|.+.++..+.+.|++ ...+.++..++.||......=...+..+|+
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~ 722 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLD 722 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999987 457788888888887765433334555554
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.00 E-value=0.00017 Score=84.50 Aligned_cols=648 Identities=14% Similarity=0.165 Sum_probs=320.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HhhC---------CCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCc
Q 001675 8 LILQGALSPNPEERKAAEHSLN-QFQY---------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNE 77 (1033)
Q Consensus 8 ~~L~~tls~d~~~r~~AE~~L~-~~~~---------~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~ 77 (1033)
+++....|+|...|=-|..-|- ++++ .+.-...+++.+.+. +.+|.++|.=.+--.+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~--ngEVQnlAVKClg~lvs---------- 76 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK--NGEVQNLAVKCLGPLVS---------- 76 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHh----------
Confidence 7788888999888887766553 4443 455677888888764 34556665544443331
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCC----CchhHHHHHHHHhchh-----hH----HHHH
Q 001675 78 QQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPE----QWPHLLDWVKHNLQDQ-----QV----YGAL 144 (1033)
Q Consensus 78 ~~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~----~Wp~Ll~~l~~~l~s~-----~~----~~~L 144 (1033)
.++++.-..+-++|...|.+...+.|-.-+..+..+...--|. -=|+.++.+...+.+. .. --+|
T Consensus 77 --Kvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~l 154 (1233)
T KOG1824|consen 77 --KVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVL 154 (1233)
T ss_pred --hchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHH
Confidence 2666777777788888776666666655555555544433341 1233444443333332 11 2344
Q ss_pred HHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHH
Q 001675 145 FVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNA 224 (1033)
Q Consensus 145 ~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~ 224 (1033)
..+..+..+|. .+++.+-+.++....-.+. .....+++.++-++..+.... + .+.+..
T Consensus 155 Dil~d~lsr~g-----------~ll~~fh~~il~~l~~ql~-----s~R~aVrKkai~~l~~la~~~-~-----~~ly~~ 212 (1233)
T KOG1824|consen 155 DILADVLSRFG-----------TLLPNFHLSILKCLLPQLQ-----SPRLAVRKKAITALGHLASSC-N-----RDLYVE 212 (1233)
T ss_pred HHHHHHHHhhc-----------ccCcchHHHHHHHHhhccc-----ChHHHHHHHHHHHHHHHHHhc-C-----HHHHHH
Confidence 44555554442 1222222222222211111 112456777777766554321 1 234444
Q ss_pred HHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHH
Q 001675 225 WMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNL 304 (1033)
Q Consensus 225 w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~ 304 (1033)
.++.++.-+..+ .++ . .+ +.-++++..+...-|.. |. ++++.++..+.+.
T Consensus 213 li~~Ll~~L~~~----~q~--~---------~~-rt~Iq~l~~i~r~ag~r---------~~-----~h~~~ivp~v~~y 262 (1233)
T KOG1824|consen 213 LIEHLLKGLSNR----TQM--S---------AT-RTYIQCLAAICRQAGHR---------FG-----SHLDKIVPLVADY 262 (1233)
T ss_pred HHHHHHhccCCC----Cch--H---------HH-HHHHHHHHHHHHHhcch---------hh-----cccchhhHHHHHH
Confidence 454444444332 111 1 11 22445666555543331 11 1333333333333
Q ss_pred HHhhhCCcccCHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHh---h--hcccCCh-hh-HhhhhhCHHHHH-HHh
Q 001675 305 LNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIV---F--PLMCFND-ND-QKLWDEDPHEYV-RKG 376 (1033)
Q Consensus 305 l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i---~--p~l~l~~-~d-~e~we~Dp~efi-~~~ 376 (1033)
..... ..+|.+..++++-+...+.+-+ +-+.||.++++...+ . |+.-... || .+.+.+|-+++- .++
T Consensus 263 ~~~~e---~~dDELrE~~lQale~fl~rcp--~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de 337 (1233)
T KOG1824|consen 263 CNKIE---EDDDELREYCLQALESFLRRCP--KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE 337 (1233)
T ss_pred hcccc---cCcHHHHHHHHHHHHHHHHhCh--hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc
Confidence 32211 2357787777777666553221 345666666554333 1 4443322 22 233333332221 111
Q ss_pred cCcccc-cCCHHHHHHHHHHHHHHhcccchHHHHHHHH----HHhhccccCC----------------CCC---------
Q 001675 377 YDIIED-LYSPRTASMDFVSELVRKRGKENLQKFIQFI----VGIFKRYDET----------------PVE--------- 426 (1033)
Q Consensus 377 ~d~~~d-~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i----~~~l~~~~~~----------------~~~--------- 426 (1033)
+.+.+| .|-+|+||...+..+...+.+ .++.+.+-+ ...+..-.++ +.-
T Consensus 338 YsDDeD~SWkVRRaAaKcl~a~IsSR~E-~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~ 416 (1233)
T KOG1824|consen 338 YSDDEDMSWKVRRAAAKCLEAVISSRLE-MLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDA 416 (1233)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccHH-HHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchh
Confidence 111122 488999999999998776643 232222211 1111110000 000
Q ss_pred -------CCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccC-ChhHH
Q 001675 427 -------YKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS-DQNNF 498 (1033)
Q Consensus 427 -------~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~-~~~~~ 498 (1033)
..-|..++...+++.+ +-+.+.....--|-.++..+......... -.++.
T Consensus 417 ~e~~g~~s~~~~L~~~~~~iVka----------------------i~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~ 474 (1233)
T KOG1824|consen 417 MEQGGTPSDLSMLSDQVPLIVKA----------------------IQKQLREKSVKTRQGCFLLLTELINVLPGALAQHI 474 (1233)
T ss_pred hhccCCccchHHHHhhhHHHHHH----------------------HHHHHhhccccchhhHHHHHHHHHHhCcchhhhcc
Confidence 0011122222222222 22222211111233344444443322100 01456
Q ss_pred HHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhh----hchhhHHHHHHHHHHhhc
Q 001675 499 RKALHSVVSGLRDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE----VENEDLVFTLETIVDKFG 572 (1033)
Q Consensus 499 ~~~~~~l~~~L~d~--~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~----~~~~~l~~~l~~iv~~~~ 572 (1033)
..+++++...|+|. .--.+..|-..+...+..+ .++.+.|+++.+..-+.....+ +..| ...+...++++..
T Consensus 475 ~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~-~p~~fhp~~~~Ls~~v~~aV~d~fyKisaE-AL~v~~~lvkvir 552 (1233)
T KOG1824|consen 475 PSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH-PPEVFHPHLSALSPPVVAAVGDPFYKISAE-ALLVCQQLVKVIR 552 (1233)
T ss_pred cccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC-ChhhcccchhhhhhHHHHHhcCchHhhhHH-HHHHHHHHHHHhc
Confidence 77888888889874 3346777777777777665 4788888888877776665554 2223 3344555665542
Q ss_pred -------ccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHH
Q 001675 573 -------EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRR 645 (1033)
Q Consensus 573 -------~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~ 645 (1033)
-...||+..+.....+ ..+..+.| .-.+...+.|++.++..+++ .....-+.++|++..
T Consensus 553 pl~~~~~~d~~~~v~~m~~~tl~----rL~a~d~D-------qeVkeraIscmgq~i~~fgD---~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 553 PLQPPSSFDASPYVKTMYDCTLQ----RLKATDSD-------QEVKERAISCMGQIIANFGD---FLGNELPRTLPILLE 618 (1233)
T ss_pred ccCCCccCCCChhHHHHHHHHHH----HHhccccc-------HHHHHHHHHHHHHHHHHHhh---hhhhhhHHHHHHHHH
Confidence 2355676666544333 23322211 12344678889999888763 334455778888887
Q ss_pred HcccCchhHH-HHHHHHHHHhhhcCC--CCCHhHHHHHHHHHHHhhh----hHhhhhhhhhhhhhhhhccCcccccccCC
Q 001675 646 MLTTDGQEVF-EEVLEIVSYMTFFSP--TISLEMWSLWPLMMEALAD----WAIDFFPNILVPLDNYISRGTAHFLTCKE 718 (1033)
Q Consensus 646 il~~~~~~~~-~~~l~ll~~l~~~~~--~isp~l~~l~~~l~~~~~~----~~~~~~~~~~~~L~~~i~~~~~~~l~~~~ 718 (1033)
-+.++..-+. -.++-+ +....- ..+|.+.+++|.+...+.. .....+..+..++++|...++...
T Consensus 619 Rl~nEiTRl~AvkAlt~---Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~----- 690 (1233)
T KOG1824|consen 619 RLGNEITRLTAVKALTL---IAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAEL----- 690 (1233)
T ss_pred HHhchhHHHHHHHHHHH---HHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH-----
Confidence 7777655432 123322 222211 3467778888877665522 234566667777888866655443
Q ss_pred cchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHh
Q 001675 719 PDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (1033)
Q Consensus 719 ~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~ 778 (1033)
++.++.=+..+++.. +..-...+..++.+++...+......-.+++..++.-+++
T Consensus 691 ---~e~vL~el~~Lises--dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 691 ---LEAVLVELPPLISES--DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS 745 (1233)
T ss_pred ---HHHHHHHhhhhhhHH--HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC
Confidence 344444444444211 1111234777777777776655444444555555555443
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.86 E-value=0.00067 Score=79.68 Aligned_cols=486 Identities=14% Similarity=0.180 Sum_probs=269.7
Q ss_pred HhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh----hHHHHHHHHHHHHHHhccCCcccchHHHHHHHHH
Q 001675 97 VAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEET 172 (1033)
Q Consensus 97 l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~ 172 (1033)
+.++-..||+....+++.++..---.-+-++++.+..-+..+ .++....||.+|++.-.++ +..-+..+
T Consensus 183 l~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r-------~~~h~~~i 255 (1233)
T KOG1824|consen 183 LQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR-------FGSHLDKI 255 (1233)
T ss_pred ccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcch-------hhcccchh
Confidence 444556799999999999987643345677777777777655 4677889999999864332 12223456
Q ss_pred HHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCCCC-CCCCCh-----
Q 001675 173 FHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSE-GEPADP----- 246 (1033)
Q Consensus 173 ~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l~~~~p~~-~~~~d~----- 246 (1033)
.|.+.+.++.. +. +-.+++..++..+..+... -|.... ...+...++++..++.+..-. ....|+
T Consensus 256 vp~v~~y~~~~-e~-----~dDELrE~~lQale~fl~r-cp~ei~--p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 256 VPLVADYCNKI-EE-----DDDELREYCLQALESFLRR-CPKEIL--PHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred hHHHHHHhccc-cc-----CcHHHHHHHHHHHHHHHHh-Chhhhc--ccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 67777777654 11 1245666666666554432 122211 334556677778787642100 000000
Q ss_pred -----hh------hhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHH---------------HHHH
Q 001675 247 -----EQ------RKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGK---------------ILEC 300 (1033)
Q Consensus 247 -----~~------~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~---------------~~~~ 300 (1033)
++ -+..-=||+|+.+.+++..++..- .++ ...|.....|. ++..
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR-------~E~---L~~~~q~l~p~lI~RfkEREEnVk~dvf~~ 396 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR-------LEM---LPDFYQTLGPALISRFKEREENVKADVFHA 396 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhcc-------HHH---HHHHHHHhCHHHHHHHHHHhhhHHHHHHHH
Confidence 00 011223899999999998876531 121 11111112222 2223
Q ss_pred HHHHHHhhhCC-ccc-C-HHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhc
Q 001675 301 HLNLLNRIRVG-GYL-P-DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGY 377 (1033)
Q Consensus 301 ~~~~l~~~~~~-~~~-~-d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~ 377 (1033)
|..++.+++.- .+. + |+.-. -..+.....++.....|+. .|-+.| |
T Consensus 397 yi~ll~qt~~~~~~~~d~d~~e~---------~g~~s~~~~L~~~~~~iVk-ai~~ql------------------r--- 445 (1233)
T KOG1824|consen 397 YIALLKQTRPVIEVLADNDAMEQ---------GGTPSDLSMLSDQVPLIVK-AIQKQL------------------R--- 445 (1233)
T ss_pred HHHHHHcCCCCcccccCchhhhc---------cCCccchHHHHhhhHHHHH-HHHHHH------------------h---
Confidence 33333221100 000 0 01000 0111111223333333332 121221 1
Q ss_pred CcccccCCHHHHHHHHHHHHHHhcccchHH---HHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcch
Q 001675 378 DIIEDLYSPRTASMDFVSELVRKRGKENLQ---KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYK 454 (1033)
Q Consensus 378 d~~~d~~s~R~aa~~ll~~L~~~~~~~~~~---~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~ 454 (1033)
++.--.|..+..+|..+...++....+ .+++-|...|+..+ ..+-.++++.-++.+.+...-.+. +.
T Consensus 446 ---~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkS-----sss~~ki~~L~fl~~~L~s~~p~~--fh 515 (1233)
T KOG1824|consen 446 ---EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKS-----SSSNLKIDALVFLYSALISHPPEV--FH 515 (1233)
T ss_pred ---hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCcc-----chHHHHHHHHHHHHHHHhcCChhh--cc
Confidence 112226778888999998887654333 33333333333221 124578888888888777654332 11
Q ss_pred hHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccc--------cCChhHHHHHHHHHHhcCC--CCCCchHHHHHHHH
Q 001675 455 SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--------FSDQNNFRKALHSVVSGLR--DPELPVRVDSVFAL 524 (1033)
Q Consensus 455 ~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~--------~~~~~~~~~~~~~l~~~L~--d~~~~Vr~~Aa~al 524 (1033)
+..+-+.+.|.-...++.+-+-+-|+.+.++|.++. |.......+++...++.|. |.+.-||..|..++
T Consensus 516 -p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscm 594 (1233)
T KOG1824|consen 516 -PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCM 594 (1233)
T ss_pred -cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 122333343433445667778899999999997743 3233578999999999885 67888999999999
Q ss_pred HHHHHhccccchhhcchHHHHHHHHHHhhh-hchhhHHHHHHHHHHh-hcccccccHHHHHHHHHHHHHHHHhhccCCCC
Q 001675 525 RSFVEACRDLNEIRPILPQLLDEFFKLMNE-VENEDLVFTLETIVDK-FGEEMAPYALGLCQNLAAAFWRCMNTAEADED 602 (1033)
Q Consensus 525 ~~~~~~~~~~~~l~p~l~~il~~L~~ll~~-~~~~~l~~~l~~iv~~-~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~ 602 (1033)
..++-.- .+.++..++.++..++.-+++ +..-....++.-|+.. ..=.+.|...++...|.+ |.+-..
T Consensus 595 gq~i~~f--gD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~-flrK~~------- 664 (1233)
T KOG1824|consen 595 GQIIANF--GDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELAS-FLRKNQ------- 664 (1233)
T ss_pred HHHHHHH--hhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHH-HHHHHH-------
Confidence 9999874 577888888888888766643 2222334444444432 223456777788888876 333211
Q ss_pred CCChhHHHHHHHHHHHHHHHHhccC--ChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcC
Q 001675 603 ADDPGALAAVGCLRAISTILESVSR--LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (1033)
Q Consensus 603 ~~~~~~~~~~~~l~~i~~li~~~~~--~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~ 669 (1033)
.-.+...+.++..++...+. .++.+..+-..+.|+|.. ..-...+.++.++++++...
T Consensus 665 -----r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise----sdlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 665 -----RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE----SDLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred -----HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHhcc
Confidence 12344677788888877643 344444444444454432 33457788899998887643
No 26
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.70 E-value=1.2e-07 Score=92.77 Aligned_cols=108 Identities=27% Similarity=0.459 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh--hHHHHHHHHHHHHHHhc-cCC----cccchHHHHHHHHHH
Q 001675 101 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKYE-FKS----DEERTPVYRIVEETF 173 (1033)
Q Consensus 101 ~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i~k~~~-~~~----~~~~~~l~~i~~~~~ 173 (1033)
|+.|+++++.+++.|+.+|||++||++++++++.++++ +...+|.+|..+.+++. +++ .+.|..+...+...+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999986 56677888887777774 221 223566777888888
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhh
Q 001675 174 HHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY 209 (1033)
Q Consensus 174 p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~ 209 (1033)
|.+++++.+.++.... ....++...+++|+.+++.
T Consensus 81 ~~i~~~l~~~l~~~~~-~~~~~~~~~~L~~l~s~i~ 115 (148)
T PF08389_consen 81 PDILEILSQILSQSSS-EANEELVKAALKCLKSWIS 115 (148)
T ss_dssp HHHHHHHHHHHHHHCH-CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHH
Confidence 9999998888765321 1126778899999988765
No 27
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.22 E-value=0.0038 Score=71.56 Aligned_cols=278 Identities=15% Similarity=0.204 Sum_probs=154.4
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchh--hHHHHHHHHHHhhcccccccH
Q 001675 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE--DLVFTLETIVDKFGEEMAPYA 579 (1033)
Q Consensus 502 ~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~--~l~~~l~~iv~~~~~~i~p~~ 579 (1033)
+..++.-+.|...+-|-.++.++.+++......+.=...-..++.+++..+++-+.+ .+...+.+++..++..+.||.
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpyl 797 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYL 797 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccch
Confidence 344455556677778888888888888766422222334456777777777664443 356888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHH
Q 001675 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVL 659 (1033)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l 659 (1033)
++||.... +++ ++.. +..+.....+++.+...++...+ ..+...+--++-.-|..+..+.+..++
T Consensus 798 pqi~stiL---~rL-nnks---------a~vRqqaadlis~la~Vlktc~e--e~~m~~lGvvLyEylgeeypEvLgsIL 862 (1172)
T KOG0213|consen 798 PQICSTIL---WRL-NNKS---------AKVRQQAADLISSLAKVLKTCGE--EKLMGHLGVVLYEYLGEEYPEVLGSIL 862 (1172)
T ss_pred HHHHHHHH---HHh-cCCC---------hhHHHHHHHHHHHHHHHHHhccH--HHHHHHhhHHHHHhcCcccHHHHHHHH
Confidence 99987654 332 3221 12233334444444443322111 112233333344445555667777777
Q ss_pred HHHHHhhhcC--CCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCC
Q 001675 660 EIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKN 737 (1033)
Q Consensus 660 ~ll~~l~~~~--~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~ 737 (1033)
.-+.+++... .+..|...+++|.+..++++...-...+++.++......|++.+-.. +.+..-|+.+.-+-..+
T Consensus 863 gAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aR---EWMRIcfeLlelLkahk- 938 (1172)
T KOG0213|consen 863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAR---EWMRICFELLELLKAHK- 938 (1172)
T ss_pred HHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHHH-
Confidence 7777766532 34566677888888888766555566777888888778888754321 34444444443332211
Q ss_pred CCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhh-hhHHHHHH-HHHHHHHhhhChHHHHHHHH
Q 001675 738 LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE-KSYLKCLL-VQVIADALYYNSSLTLSILH 808 (1033)
Q Consensus 738 ~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~-~~~~~~~~-l~v~~~~~~~~~~~~l~~L~ 808 (1033)
.+ -+..|..-...|....+. .+++..++..|...+ ...+-..+ +.+++- ++.|-.++..|-
T Consensus 939 K~--iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE--~c~pFtVLPalm 1001 (1172)
T KOG0213|consen 939 KE--IRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAE--TCGPFTVLPALM 1001 (1172)
T ss_pred HH--HHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhh--hcCchhhhHHHH
Confidence 00 012244444444444332 267777777775432 22222222 333332 245655554443
No 28
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.034 Score=63.44 Aligned_cols=145 Identities=18% Similarity=0.272 Sum_probs=112.7
Q ss_pred CC-hHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcC
Q 001675 1 MD-LPSLALILQGAL-SPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (1033)
Q Consensus 1 Md-~~~L~~~L~~tl-s~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~ 78 (1033)
|+ +++|..+-...+ |.|+..|.+||..|.++...|++++.+.-++.+.+. +.-..+|+..|-+.|.++=
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-pYs~mlAst~L~Klvs~~t-------- 71 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-PYSQMLASTCLMKLVSRKT-------- 71 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHcCCC--------
Confidence 44 556666666654 589999999999999999999999999888888654 4556677888877776643
Q ss_pred CCCChhHHHHHHHHHHHHHhc-CC---hHHHHHHHHHHHHHHHhhCCC------CchhHHHHHHHHhchh---hHHHHHH
Q 001675 79 QKISQVDKDMVRDHILVFVAQ-VP---PLLRVQLGECLKTIIHADYPE------QWPHLLDWVKHNLQDQ---QVYGALF 145 (1033)
Q Consensus 79 ~~l~~~~k~~ir~~Ll~~l~~-~~---~~ir~~la~~i~~Ia~~d~P~------~Wp~Ll~~l~~~l~s~---~~~~~L~ 145 (1033)
++|-+.|-.||+-+++.+.. .| +-+-..+...+++|-+..|-+ .+-+.+.++...++.+ +-..|+.
T Consensus 72 -~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~ 150 (1082)
T KOG1410|consen 72 -PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQ 150 (1082)
T ss_pred -CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHH
Confidence 49999999999999999976 22 346677888889998887752 2457888888888766 3456788
Q ss_pred HHHHHHHHhc
Q 001675 146 VLRILSRKYE 155 (1033)
Q Consensus 146 ~L~~i~k~~~ 155 (1033)
.|.+++.+..
T Consensus 151 iLsqLvqemN 160 (1082)
T KOG1410|consen 151 ILSQLVQEMN 160 (1082)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.97 E-value=0.067 Score=64.34 Aligned_cols=502 Identities=16% Similarity=0.200 Sum_probs=262.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhC---CC-ChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCC
Q 001675 4 PSLALILQGALSPNPEERKAAEHSLNQFQY---TP-QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (1033)
Q Consensus 4 ~~L~~~L~~tls~d~~~r~~AE~~L~~~~~---~p-~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~ 79 (1033)
+++..++...- .|...|+.|=..|-.+.. .. .+.....+.+. +.+...|.++=+++.... .
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~----~-------- 71 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYL----H-------- 71 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHT----T--------
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHh----h--------
Confidence 45666665544 566677777666665542 11 22333344443 447889999988886554 2
Q ss_pred CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh--hH-HHHHHHHHHHHHHhcc
Q 001675 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEF 156 (1033)
Q Consensus 80 ~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~ 156 (1033)
-.++.--.+-+.+.+-|.++++.+|...-.+++.|. -|+-.|.+++.+.+.+.++ .+ ..|+.++.++++.+.
T Consensus 72 -~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p- 146 (526)
T PF01602_consen 72 -EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP- 146 (526)
T ss_dssp -TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-
T ss_pred -cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-
Confidence 233444455666666677888888877766666666 4456889999999999877 33 578899999998742
Q ss_pred CCcccchHHHHHHHH-HHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCc-ccCChhhHHHHHHHHHHHhc
Q 001675 157 KSDEERTPVYRIVEE-TFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QLLDPNVFNAWMILFLNVLE 234 (1033)
Q Consensus 157 ~~~~~~~~l~~i~~~-~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~-~~~~~~~l~~w~~~~~~~l~ 234 (1033)
+ .++. ++|.+.++ +.+.+ ..++..++.++..+ ..++ ... ..+......+..++.
T Consensus 147 ---~-------~~~~~~~~~l~~l----L~d~~-----~~V~~~a~~~l~~i---~~~~~~~~--~~~~~~~~~L~~~l~ 202 (526)
T PF01602_consen 147 ---D-------LVEDELIPKLKQL----LSDKD-----PSVVSAALSLLSEI---KCNDDSYK--SLIPKLIRILCQLLS 202 (526)
T ss_dssp ---C-------CHHGGHHHHHHHH----TTHSS-----HHHHHHHHHHHHHH---HCTHHHHT--THHHHHHHHHHHHHT
T ss_pred ---H-------HHHHHHHHHHhhh----ccCCc-----chhHHHHHHHHHHH---ccCcchhh--hhHHHHHHHhhhccc
Confidence 1 1112 34444433 33221 34556666666655 1111 111 234444444444442
Q ss_pred CCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCccc
Q 001675 235 RPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYL 314 (1033)
Q Consensus 235 ~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (1033)
.+ .| |....+-+++.+|+... +... .. ..+++.+...+.+ .
T Consensus 203 ~~---------------~~------~~q~~il~~l~~~~~~~---~~~~-------~~--~~~i~~l~~~l~s------~ 243 (526)
T PF01602_consen 203 DP---------------DP------WLQIKILRLLRRYAPME---PEDA-------DK--NRIIEPLLNLLQS------S 243 (526)
T ss_dssp CC---------------SH------HHHHHHHHHHTTSTSSS---HHHH-------HH--HHHHHHHHHHHHH------H
T ss_pred cc---------------ch------HHHHHHHHHHHhcccCC---hhhh-------hH--HHHHHHHHHHhhc------c
Confidence 21 12 22223334555554321 1110 00 2344444444443 2
Q ss_pred CHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHH
Q 001675 315 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV 394 (1033)
Q Consensus 315 ~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll 394 (1033)
+..++..++..+..+..... . +..++..++ ..+. ......|..|.+.|
T Consensus 244 ~~~V~~e~~~~i~~l~~~~~---~----~~~~~~~L~-~lL~------------------------s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 244 SPSVVYEAIRLIIKLSPSPE---L----LQKAINPLI-KLLS------------------------SSDPNVRYIALDSL 291 (526)
T ss_dssp HHHHHHHHHHHHHHHSSSHH---H----HHHHHHHHH-HHHT------------------------SSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhcchH---H----HHhhHHHHH-HHhh------------------------cccchhehhHHHHH
Confidence 35677777777776554433 1 111121111 1110 01134677788888
Q ss_pred HHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCC-CCc
Q 001675 395 SELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPV 473 (1033)
Q Consensus 395 ~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~-~~~ 473 (1033)
..++...+..+.. ..+....+.. + .+...|--++.++..++..- ++..++ +.+...+. .+.
T Consensus 292 ~~l~~~~~~~v~~--~~~~~~~l~~---~----~d~~Ir~~~l~lL~~l~~~~--------n~~~Il-~eL~~~l~~~~d 353 (526)
T PF01602_consen 292 SQLAQSNPPAVFN--QSLILFFLLY---D----DDPSIRKKALDLLYKLANES--------NVKEIL-DELLKYLSELSD 353 (526)
T ss_dssp HHHCCHCHHHHGT--HHHHHHHHHC---S----SSHHHHHHHHHHHHHH--HH--------HHHHHH-HHHHHHHHHC--
T ss_pred HHhhcccchhhhh--hhhhhheecC---C----CChhHHHHHHHHHhhccccc--------chhhHH-HHHHHHHHhccc
Confidence 8887766332221 1111122221 1 13445666666666666531 122221 22222232 224
Q ss_pred ccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhh
Q 001675 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 553 (1033)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~ 553 (1033)
+-+|..++..++..+... +.....++..+++.+...+..+...+...+..++...+ .. -..++..++..+.
T Consensus 354 ~~~~~~~i~~I~~la~~~---~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~---~~---~~~~l~~L~~~l~ 424 (526)
T PF01602_consen 354 PDFRRELIKAIGDLAEKF---PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP---EL---REKILKKLIELLE 424 (526)
T ss_dssp HHHHHHHHHHHHHHHHHH---GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST---TT---HHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHhcc---CchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh---hh---hHHHHHHHHHHHH
Confidence 458888888888887632 22346677777878776666678888888988887642 11 2345777777777
Q ss_pred hhchhhHHHHHHHHHHhhcccccc--cHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHH
Q 001675 554 EVENEDLVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHL 631 (1033)
Q Consensus 554 ~~~~~~l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~ 631 (1033)
+.+...+..++--++..|++.+.. .+.++...+...| . ++ .......++.++..+....... +.
T Consensus 425 ~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~----~----~~-----~~~vk~~ilt~~~Kl~~~~~~~-~~ 490 (526)
T PF01602_consen 425 DISSPEALAAAIWILGEYGELIENTESAPDILRSLIENF----I----EE-----SPEVKLQILTALAKLFKRNPEN-EV 490 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHH----T----TS-----HHHHHHHHHHHHHHHHHHSCST-TH
T ss_pred HhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhh----c----cc-----cHHHHHHHHHHHHHHHhhCCch-hh
Confidence 766665544444444445444433 4556666555432 1 11 2345556777777776554321 12
Q ss_pred HHHHHhhHHHHHHHHcc--cCchhHHHHHHHHHHHh
Q 001675 632 FVQIEPTLLPIMRRMLT--TDGQEVFEEVLEIVSYM 665 (1033)
Q Consensus 632 ~~~l~~~~~p~i~~il~--~~~~~~~~~~l~ll~~l 665 (1033)
. +.+.+.+..... ....+.-+.+...+.-+
T Consensus 491 ~----~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 491 Q----NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp H----HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 2 244444444444 33556777777666544
No 30
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.93 E-value=0.023 Score=70.82 Aligned_cols=386 Identities=15% Similarity=0.167 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHHhcc-cchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhh
Q 001675 387 RTASMDFVSELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 465 (1033)
Q Consensus 387 R~aa~~ll~~L~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v 465 (1033)
+..|......|+.+++ ...+.+++..|...+.+ .....|--|+.++..+.+.=...- ...++ ...|
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e--------~~ialRtkAlKclS~ive~Dp~vL-~~~dv----q~~V 860 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGE--------NAIALRTKALKCLSMIVEADPSVL-SRPDV----QEAV 860 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHhcChHhh-cCHHH----HHHH
Confidence 4455555556665542 12334444444444432 256778889999988876522110 01122 3345
Q ss_pred cccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHH
Q 001675 466 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (1033)
Q Consensus 466 ~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il 545 (1033)
..-+.+++..+|-.|..++|+|.-+ .++...++|..+.+.+.|+...||-.|.+-++.+|...+ -++.+.
T Consensus 861 h~R~~DssasVREAaldLvGrfvl~---~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p-------df~~i~ 930 (1692)
T KOG1020|consen 861 HGRLNDSSASVREAALDLVGRFVLS---IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP-------DFSKIV 930 (1692)
T ss_pred HHhhccchhHHHHHHHHHHhhhhhc---cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-------ChhhHH
Confidence 5566788899999999999999642 567889999999999999999999999999999998742 222223
Q ss_pred HHHHHHhhhhchhh-------------------------------------------------HHHHHHHHHHhh-----
Q 001675 546 DEFFKLMNEVENED-------------------------------------------------LVFTLETIVDKF----- 571 (1033)
Q Consensus 546 ~~L~~ll~~~~~~~-------------------------------------------------l~~~l~~iv~~~----- 571 (1033)
..+.+++..++.|+ +..++..|+...
T Consensus 931 ~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~ 1010 (1692)
T KOG1020|consen 931 DMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTM 1010 (1692)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhh
Confidence 33333333222111 111111121111
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhcc--CCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHH-HHHhhHHHHHHHH-c
Q 001675 572 GEEMAPYALGLCQNLAAAFWRCMNTAE--ADEDADDPGALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRM-L 647 (1033)
Q Consensus 572 ~~~i~p~~~~l~~~L~~~~~~~~~~~~--~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~-~l~~~~~p~i~~i-l 647 (1033)
...+.|.+...+.+....+.....+.. -+. ++..+.-....++.+++++.......|..+. .....+.|++..- =
T Consensus 1011 ~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~-~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~ 1089 (1692)
T KOG1020|consen 1011 KESVKPVALAKVTHVLNLLTHCLVEKISEVES-DDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKAS 1089 (1692)
T ss_pred hhhhhHHHHhhcchHHHHHHHHHHHHHHhhhh-HhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhcccc
Confidence 112233332222222221111111000 000 0000011123456677777666666777666 6677888888764 2
Q ss_pred ccCchhHHHHHHHHHHHhhhcCCCCCHhH-HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHH
Q 001675 648 TTDGQEVFEEVLEIVSYMTFFSPTISLEM-WSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLW 726 (1033)
Q Consensus 648 ~~~~~~~~~~~l~ll~~l~~~~~~isp~l-~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il 726 (1033)
+.....|..++++++...+-..+.++..+ ..+=..++..+-..+...+.++++||.+.+.+-... ...+..++
T Consensus 1090 t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~------~~~v~~cf 1163 (1692)
T KOG1020|consen 1090 TIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDG------AKVVKACF 1163 (1692)
T ss_pred chHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccc------hHHHHHHH
Confidence 23456899999999999885555555553 455556666665566777888899998877653332 24677788
Q ss_pred HHHHHHhcC-CC--CCCCcc------CchhHHHHHHHHHccc--C------chhchHHHHHHHHHHHH---hhhhhHHHH
Q 001675 727 SMVSSIMAD-KN--LEDGDI------EPAPKLIEVVFQNCKG--Q------VDHWVEPYLRITVERLR---RAEKSYLKC 786 (1033)
Q Consensus 727 ~i~~~~l~~-~~--~~~~~~------~~a~~ll~~il~~~~~--~------~~~~l~~il~~~~~~l~---~~~~~~~~~ 786 (1033)
+.|.+.+.- +. .+..+. ...+.++..+.++..- . ..+....+...++..|. ..+...++.
T Consensus 1164 ~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~ 1243 (1692)
T KOG1020|consen 1164 SCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRR 1243 (1692)
T ss_pred HHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHH
Confidence 888777742 11 122111 1234556666665321 1 11223345555554443 333466776
Q ss_pred HHHHHHHHHhhhChHH
Q 001675 787 LLVQVIADALYYNSSL 802 (1033)
Q Consensus 787 ~~l~v~~~~~~~~~~~ 802 (1033)
..+.-+.+....+|..
T Consensus 1244 ~al~~Lg~~ci~hp~l 1259 (1692)
T KOG1020|consen 1244 KALINLGFICIQHPSL 1259 (1692)
T ss_pred HHHHHHHHHHhhCchh
Confidence 6666666666666653
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0067 Score=67.90 Aligned_cols=378 Identities=15% Similarity=0.175 Sum_probs=204.4
Q ss_pred cCCHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHH
Q 001675 383 LYSPRTASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (1033)
Q Consensus 383 ~~s~R~aa~~ll~~L~~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l 461 (1033)
.|..|.||+--+..+++.+ .+.-...+-.++.+....|.-+|.. + .+-|++..+.+.+-++..... .-++.++
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~--n--~rkGgLiGlAA~~iaLg~~~~--~Y~~~iv 86 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHA--N--MRKGGLIGLAAVAIALGIKDA--GYLEKIV 86 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccc--c--cccchHHHHHHHHHHhccccH--HHHHHhh
Confidence 4778999988888888754 2223344445555555555444432 2 233999888888777654321 1233332
Q ss_pred HHhhcccCCCCcccchHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhc
Q 001675 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (1033)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p 539 (1033)
.-|++.+.++...+|.-||.-+=..+..- +.. .++..++..+.....|++.-|| .++.-+.+++.+--....-.=
T Consensus 87 -~Pv~~cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 87 -PPVLNCFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTESASTF 163 (675)
T ss_pred -HHHHHhccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcccccccc
Confidence 33556677788888998888775544421 222 4678888888888889988888 567778888766421111122
Q ss_pred chHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHH
Q 001675 540 ILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (1033)
Q Consensus 540 ~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (1033)
.++.+++-|-.-+...+..+ +..=+..+-.+-.-++..|.+.+...|.+. .+ |+ ..-.+.-+=.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~----Ls----D~-----s~eVr~~~~t 230 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNM----LS----DS-----SDEVRTLTDT 230 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHH----hc----CC-----cHHHHHHHHH
Confidence 33344333333333233222 222222222222223445667777766652 22 11 1111222334
Q ss_pred HHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcC-CCCCHhHHHHHHHHHHHhhhhHhhhh
Q 001675 617 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFF 695 (1033)
Q Consensus 617 ~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~~~~~~~~~~~ 695 (1033)
+++..+..+.+.|..+. .....+++..=++......-.-++--+..+++-. +.+-+.+-.++..++.|+.+.....+
T Consensus 231 ~l~~fL~eI~s~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHHHHHhcCccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH
Confidence 57777777766665431 1233343333232223333444554445555433 23344455566666666533222111
Q ss_pred hh--------hhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHH
Q 001675 696 PN--------ILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEP 767 (1033)
Q Consensus 696 ~~--------~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~ 767 (1033)
.+ ++.....+ .+.++ + + ...++++..+.+.+. .+..+.++.+-+..+.++.|+.+--+..+
T Consensus 309 ~~~a~~~n~~l~~l~s~~--~~~~~-i-----d-~~~ii~vl~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~ 377 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSE--RLKEE-I-----D-YGSIIEVLTKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDS 377 (675)
T ss_pred HHHHHHHHHHHHHHHhhh--hhccc-c-----c-hHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccH
Confidence 11 11122221 11111 1 2 246778888888755 23336788899999999999998888889
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001675 768 YLRITVERLRRAEKSYLKCLLVQVIADAL 796 (1033)
Q Consensus 768 il~~~~~~l~~~~~~~~~~~~l~v~~~~~ 796 (1033)
|+..++..|.+.. ..+....+.+++...
T Consensus 378 if~tLL~tLsd~s-d~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 378 IFLTLLKTLSDRS-DEVVLLALSLLASIC 405 (675)
T ss_pred HHHHHHHhhcCch-hHHHHHHHHHHHHHh
Confidence 9988888776533 334444455555554
No 32
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.061 Score=67.34 Aligned_cols=326 Identities=12% Similarity=0.192 Sum_probs=185.7
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCC---CCcccchHHHHHHHHhhhccccCCh-----hHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQ-----NNFRK 500 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~~~~~-----~~~~~ 500 (1033)
.|..|-||-+.+|.++..-.+ .+++++.+.|.-.+. +|.+-++.. +--+ |.... .+. +++..
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~------kl~p~l~kLIPrLyRY~yDP~~~Vq~a-M~sI--W~~Li-~D~k~~vd~y~ne 1039 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGE------KLEPYLKKLIPRLYRYQYDPDKKVQDA-MTSI--WNALI-TDSKKVVDEYLNE 1039 (1702)
T ss_pred hhhcccchhhchHHHHHHHHH------hhhhHHHHhhHHHhhhccCCcHHHHHH-HHHH--HHHhc-cChHHHHHHHHHH
Confidence 699999999999999986532 567777664433433 455545442 2222 32222 221 67899
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchh------hHHHHHHHHHHhhccc
Q 001675 501 ALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE------DLVFTLETIVDKFGEE 574 (1033)
Q Consensus 501 ~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~------~l~~~l~~iv~~~~~~ 574 (1033)
++.-++..|.+..-.||.++|.|+..+++.. ..+.+...++.+...+|+.|+++... -...++..++-+..+-
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~-~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGR-PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999986 36778889999999999999876542 1445666665555443
Q ss_pred ccc-cHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchh
Q 001675 575 MAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQE 653 (1033)
Q Consensus 575 i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~ 653 (1033)
..+ -+.+.+..+.+. +|..+.... ..-.+...+.++..++.+.+ ..+...-+.++|.+..+++.-...
T Consensus 1119 ~~~~~~~~~l~~iLPf---Ll~~gims~-----v~evr~~si~tl~dl~Kssg---~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPF---LLDEGIMSK-----VNEVRRFSIGTLMDLAKSSG---KELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred CCcccHHHHHHHHHHH---HhccCcccc-----hHHHHHHHHHHHHHHHHhch---hhhcchhhHHHHHHHHHccccchH
Confidence 333 244555555543 455443211 12223345666667766643 333444566777776665432111
Q ss_pred HHHHH-HH-------HHHHhhhcCCCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHH
Q 001675 654 VFEEV-LE-------IVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSL 725 (1033)
Q Consensus 654 ~~~~~-l~-------ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i 725 (1033)
.+.|. +. -+.++=....+ +..||+-...+++.+ +. ..++.+
T Consensus 1188 vLnYls~r~~~~e~ealDt~R~s~ak-sspmmeTi~~ci~~i---D~---------------------------~vLeel 1236 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEALDTLRASAAK-SSPMMETINKCINYI---DI---------------------------SVLEEL 1236 (1702)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhc-CCcHHHHHHHHHHhh---hH---------------------------HHHHHH
Confidence 11110 00 00010000001 112232222222111 11 122222
Q ss_pred HHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh-hChHHHH
Q 001675 726 WSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALY-YNSSLTL 804 (1033)
Q Consensus 726 l~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~-~~~~~~l 804 (1033)
..-+.+++.. ..+-.....+...+..+...++..+.||...++.+++..+.+ +....+..+-.-...++. ..|+.+.
T Consensus 1237 ip~l~el~R~-sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~Ss~dq~q 1314 (1702)
T KOG0915|consen 1237 IPRLTELVRG-SVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFSSPDQMQ 1314 (1702)
T ss_pred HHHHHHHHhc-cCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcCChHHHH
Confidence 2333333321 123333444667777788889989999999999999998876 444444444333333332 3566777
Q ss_pred HHHHh
Q 001675 805 SILHK 809 (1033)
Q Consensus 805 ~~L~~ 809 (1033)
.+++.
T Consensus 1315 KLie~ 1319 (1702)
T KOG0915|consen 1315 KLIET 1319 (1702)
T ss_pred HHHHH
Confidence 77663
No 33
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.0083 Score=68.59 Aligned_cols=236 Identities=14% Similarity=0.156 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccc
Q 001675 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEM 575 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i 575 (1033)
.++..+++.++.+..|....||..|..|.+.+.+.- ....++-+++.++..+... .--+......++.+++......+
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~-~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL-SAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc-CcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHH
Confidence 578999999999999999999999999999988765 3555666777777777654 22233456677777777777777
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHH
Q 001675 576 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVF 655 (1033)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~ 655 (1033)
.-++++++..|...+ |.. ++..+..-.+||..+-..+ ++|++ +.++|.+-.++.+ .....
T Consensus 290 s~~lp~iiP~lsevl---~DT----------~~evr~a~~~~l~~~~svi-dN~dI-----~~~ip~Lld~l~d-p~~~~ 349 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVL---WDT----------KPEVRKAGIETLLKFGSVI-DNPDI-----QKIIPTLLDALAD-PSCYT 349 (569)
T ss_pred HHHHhHhhHHHHHHH---ccC----------CHHHHHHHHHHHHHHHHhh-ccHHH-----HHHHHHHHHHhcC-cccch
Confidence 777788888887743 421 3334444556666555444 45653 4678888888854 34456
Q ss_pred HHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccC--cccccccCCcchHHHHHHHHHHHh
Q 001675 656 EEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRG--TAHFLTCKEPDYQQSLWSMVSSIM 733 (1033)
Q Consensus 656 ~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~--~~~~l~~~~~~~~~~il~i~~~~l 733 (1033)
+++++.+....+-.--..|.+--+.|.+...+...+.+.-.....+++|....- +..+. +|+..++.-+.+.+
T Consensus 350 ~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la-----pfl~~Llp~lk~~~ 424 (569)
T KOG1242|consen 350 PECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA-----PFLPSLLPGLKENL 424 (569)
T ss_pred HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh-----hhHHHHhhHHHHHh
Confidence 666666665554432335777778888888776655555555566666654433 44333 68888888888887
Q ss_pred cCCCCCCCccCchhHHHHHHHHHcccC
Q 001675 734 ADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (1033)
Q Consensus 734 ~~~~~~~~~~~~a~~ll~~il~~~~~~ 760 (1033)
.+. . .+-+..+.+.+..+++.++..
T Consensus 425 ~d~-~-PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 425 DDA-V-PEVRAVAARALGALLERLGEV 449 (569)
T ss_pred cCC-C-hhHHHHHHHHHHHHHHHHHhh
Confidence 654 2 222566778888888887754
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.75 E-value=0.02 Score=68.82 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=121.5
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHH-HHHHHHh
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRK-ALHSVVS 507 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~-~~~~l~~ 507 (1033)
|...+-.|+.+++.++.. .+-+-+.+.|...+.+++|++|..|+.++.++... .++.... +++.+.+
T Consensus 92 n~~~~~lAL~~l~~i~~~---------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~~ 159 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIRTP---------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDELIPKLKQ 159 (526)
T ss_dssp SHHHHHHHHHHHHHH-SH---------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGGHHHHHHH
T ss_pred CHHHHHHHHhhhhhhccc---------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhh
Confidence 678888999999887732 23333456677777899999999999999998763 3444455 7899999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccH--HHHHHH
Q 001675 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYA--LGLCQN 585 (1033)
Q Consensus 508 ~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~--~~l~~~ 585 (1033)
.|.|+++.|+..|+.++..+ .. .+....+.++.++..|.+++...+.-....+++.+....... .... ..+++.
T Consensus 160 lL~d~~~~V~~~a~~~l~~i-~~--~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~-~~~~~~~~~i~~ 235 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEI-KC--NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME-PEDADKNRIIEP 235 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHH-HC--THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS-HHHHHHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHH-cc--CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC-hhhhhHHHHHHH
Confidence 99999999999999999988 22 122323677777777777764433323334444333221111 1111 234444
Q ss_pred HHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHh
Q 001675 586 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM 665 (1033)
Q Consensus 586 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l 665 (1033)
+.. ...+. . ..-.++++..++.... .+. +...+++.+...+.......---+++.+..+
T Consensus 236 l~~----~l~s~---------~---~~V~~e~~~~i~~l~~-~~~----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 236 LLN----LLQSS---------S---PSVVYEAIRLIIKLSP-SPE----LLQKAINPLIKLLSSSDPNVRYIALDSLSQL 294 (526)
T ss_dssp HHH----HHHHH---------H---HHHHHHHHHHHHHHSS-SHH----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHH----Hhhcc---------c---cHHHHHHHHHHHHhhc-chH----HHHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence 433 33211 1 1234666666664332 332 3455666677777655554555566666666
Q ss_pred hhc
Q 001675 666 TFF 668 (1033)
Q Consensus 666 ~~~ 668 (1033)
...
T Consensus 295 ~~~ 297 (526)
T PF01602_consen 295 AQS 297 (526)
T ss_dssp CCH
T ss_pred hcc
Confidence 543
No 35
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.14 Score=57.75 Aligned_cols=286 Identities=12% Similarity=0.132 Sum_probs=147.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchh--hHHHHHHHHHHhh
Q 001675 494 DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE--DLVFTLETIVDKF 571 (1033)
Q Consensus 494 ~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~--~l~~~l~~iv~~~ 571 (1033)
+..+.+.+++-++.|++|++..||.+||.++.+++... +..+.+|.+.|...++++....+.. .-...+..++...
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~--k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdI 155 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA--KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDI 155 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh--ccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHh
Confidence 33589999999999999999999999999999999885 6888899999999999998765432 2333333333221
Q ss_pred -cccc-cccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHccc
Q 001675 572 -GEEM-APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT 649 (1033)
Q Consensus 572 -~~~i-~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~ 649 (1033)
.+.- +=..+.+++-|... +.. . +++.+..+++.+..+-.. . +--+-..-+.+++-+-..|+.
T Consensus 156 Vte~~~tFsL~~~ipLL~er---iy~---~-------n~~tR~flv~Wl~~Lds~-P--~~~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRER---IYV---I-------NPMTRQFLVSWLYVLDSV-P--DLEMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred ccccccccCHHHHHHHHHHH---Hhc---C-------CchHHHHHHHHHHHHhcC-C--cHHHHhcchHHHHHHHHHhcC
Confidence 1111 11234454444431 110 1 235566677777555332 1 111223345566666666654
Q ss_pred Cchh---HHHHHHH-HHHHhhhcCCCCCHhHHHHHHHHHHHhhhhHhhhhh-hhhhhhhhhhccCcccccccCCcchHHH
Q 001675 650 DGQE---VFEEVLE-IVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFP-NILVPLDNYISRGTAHFLTCKEPDYQQS 724 (1033)
Q Consensus 650 ~~~~---~~~~~l~-ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~~~-~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 724 (1033)
...+ ..+.++. ++.. +.+.|. +-.+.+..+.+..-.++.. ..++ ..+.-+..|+..++..++ .+...
T Consensus 220 ~s~eVr~~~~t~l~~fL~e-I~s~P~-s~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~l-----~~~s~ 291 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAE-IRSSPS-SMDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDLL-----LYLSG 291 (675)
T ss_pred CcHHHHHHHHHHHHHHHHH-HhcCcc-ccCcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcchh-----hhhhh
Confidence 4433 3333332 2222 222221 1122233333332222211 2222 234556777877777777 56777
Q ss_pred HHHHHHHHhcCCCCCCCccCchhHHHHHHHHH-cccCc-h--hchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhCh
Q 001675 725 LWSMVSSIMADKNLEDGDIEPAPKLIEVVFQN-CKGQV-D--HWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNS 800 (1033)
Q Consensus 725 il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~-~~~~~-~--~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~ 800 (1033)
++..+..++.+. +..........+...+.. +.... . =-+..|+..+...+... .-..+...+.-+..+....|
T Consensus 292 il~~iLpc~s~~--e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 292 ILTAILPCLSDT--EEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAP 368 (675)
T ss_pred hhhhcccCCCCC--ccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCc
Confidence 776666666433 221111122222222222 22211 1 12346777766665532 22334444444444444455
Q ss_pred HHHHHHHH
Q 001675 801 SLTLSILH 808 (1033)
Q Consensus 801 ~~~l~~L~ 808 (1033)
..++....
T Consensus 369 ~ql~~h~~ 376 (675)
T KOG0212|consen 369 GQLLVHND 376 (675)
T ss_pred chhhhhcc
Confidence 55555444
No 36
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.078 Score=61.42 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=95.3
Q ss_pred HHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcch
Q 001675 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (1033)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l 541 (1033)
..-|+..+++..||+|-||+.++=+.. .+=|+.++..++.+..-|.|+++.|+.+|+..|..+.+.. +....|+.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvF---LkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn--PknyL~LA 220 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVF---LKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN--PQNYLQLA 220 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHH---HhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC--Cccccccc
Confidence 455666778899999999998884421 1234678999999999999999999999999999988764 34444554
Q ss_pred HHHHHHHHHHhhhhchh-hHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHH
Q 001675 542 PQLLDEFFKLMNEVENE-DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 620 (1033)
Q Consensus 542 ~~il~~L~~ll~~~~~~-~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ 620 (1033)
|. ++++|....+. .+..++.-+. .++|+-+.|-.+|...+.+++++. .+..-+.||+.+
T Consensus 221 P~----ffkllttSsNNWmLIKiiKLF~-----aLtplEPRLgKKLieplt~li~sT-----------~AmSLlYECvNT 280 (877)
T KOG1059|consen 221 PL----FYKLLVTSSNNWVLIKLLKLFA-----ALTPLEPRLGKKLIEPITELMEST-----------VAMSLLYECVNT 280 (877)
T ss_pred HH----HHHHHhccCCCeehHHHHHHHh-----hccccCchhhhhhhhHHHHHHHhh-----------HHHHHHHHHHHH
Confidence 44 45566554433 3444444332 467777777777777777776532 223356788888
Q ss_pred HHHh
Q 001675 621 ILES 624 (1033)
Q Consensus 621 li~~ 624 (1033)
++..
T Consensus 281 VVa~ 284 (877)
T KOG1059|consen 281 VVAV 284 (877)
T ss_pred heee
Confidence 8776
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.52 E-value=0.031 Score=66.00 Aligned_cols=204 Identities=19% Similarity=0.265 Sum_probs=117.4
Q ss_pred HHhhcccCCCCcccchHHHHHHHHhhhccccCChh--HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc-chhh
Q 001675 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN--NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL-NEIR 538 (1033)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~--~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~-~~l~ 538 (1033)
..++...|.++++.+|.-+|+.+++.....-.-.+ .-..+++.++.+|.+++.-|...|+.+|..++.....- ..+.
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~ 158 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD 158 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence 44555667889999999999999998653200001 11567899999999999999999999999999765311 1222
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHH--HHHHHHHHHhhccCCCCCCChhHHHHHHHHH
Q 001675 539 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQN--LAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (1033)
Q Consensus 539 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~--L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (1033)
+.+ +..|-.++...+...-..+++.++...+. .|...+.+.. +.+.+.+..++ + ..+....+++
T Consensus 159 ~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~~--S~~~~~~~~~sgll~~ll~eL~~---d------DiLvqlnale 224 (503)
T PF10508_consen 159 SNL---LSKLKSLMSQSSDIVRCRVYELLVEIASH--SPEAAEAVVNSGLLDLLLKELDS---D------DILVQLNALE 224 (503)
T ss_pred cch---HHHHHHHHhccCHHHHHHHHHHHHHHHhc--CHHHHHHHHhccHHHHHHHHhcC---c------cHHHHHHHHH
Confidence 322 66666666553333445667766655432 1222222221 33322222221 1 2466778888
Q ss_pred HHHHHHHhccCChHHHHHHH-hhHHHHHHHHcccCch------hHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHH
Q 001675 617 AISTILESVSRLPHLFVQIE-PTLLPIMRRMLTTDGQ------EVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEA 686 (1033)
Q Consensus 617 ~i~~li~~~~~~~~~~~~l~-~~~~p~i~~il~~~~~------~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~ 686 (1033)
+++.+... +....-+. ..+++.+...+..... -+++..+.....+.... ++..-..||.++..
T Consensus 225 ll~~La~~----~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~---~~~v~~~~p~~~~~ 294 (503)
T PF10508_consen 225 LLSELAET----PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS---PQEVLELYPAFLER 294 (503)
T ss_pred HHHHHHcC----hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC---hHHHHHHHHHHHHH
Confidence 88888763 22222232 3466666666543221 24556666666666432 22334556655544
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=97.51 E-value=0.48 Score=58.05 Aligned_cols=127 Identities=11% Similarity=0.125 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHh
Q 001675 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (1033)
Q Consensus 385 s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~ 464 (1033)
..|..+..-+..++.+++. ....++.++.+++... . +. ..+ ++..+-.+ +.+.+. ..-+..+....
T Consensus 383 ef~r~aIrAIg~lA~k~~~-~a~~cV~~Ll~ll~~~----~---~~-v~e-~i~vik~I---lrkyP~-~~il~~L~~~~ 448 (746)
T PTZ00429 383 VFVVEVVRAIASLAIKVDS-VAPDCANLLLQIVDRR----P---EL-LPQ-VVTAAKDI---VRKYPE-LLMLDTLVTDY 448 (746)
T ss_pred HHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHhcCC----c---hh-HHH-HHHHHHHH---HHHCcc-HHHHHHHHHhh
Confidence 3566677788888887754 4556666666666431 1 22 223 23333333 333221 11122221111
Q ss_pred hcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
....+ .+|-.|+..+|++|+|++.. +....++..+++.+.+.+..||.....|.-+++-..
T Consensus 449 ~~~~i--~e~~AKaaiiWILGEy~~~I----~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~ 509 (746)
T PTZ00429 449 GADEV--VEEEAKVSLLWMLGEYCDFI----ENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD 509 (746)
T ss_pred ccccc--ccHHHHHHHHHHHHhhHhhH----hhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC
Confidence 11222 45778999999999998753 124556666667777777889999888888877664
No 39
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.49 E-value=0.92 Score=60.80 Aligned_cols=373 Identities=15% Similarity=0.159 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHH---HHHHH
Q 001675 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL---ERMLV 462 (1033)
Q Consensus 386 ~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l---~~~l~ 462 (1033)
.+..|...|..|+....+..+..+. .++.. ++.+.+.-++.++|.+....... +..... ..- .
T Consensus 546 ~q~~Aa~AL~nLi~~~d~~~I~~Lv----~LLls--------dd~~~~~~aL~vLgnIlsl~~~~-d~~~~g~~~~gg-L 611 (2102)
T PLN03200 546 GQEIAAKTLTKLVRTADAATISQLT----ALLLG--------DLPESKVHVLDVLGHVLSVASLE-DLVREGSAANDA-L 611 (2102)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHH----HHhcC--------CChhHHHHHHHHHHHHHhhcchh-HHHHHhhhcccc-H
Confidence 3555677777777665555444433 33432 13456666888888875533221 000000 011 1
Q ss_pred HhhcccCCCCcccchHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcc
Q 001675 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 540 (1033)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~ 540 (1033)
..+...+.++++-.|..|+|+++.+........ -.....++-++..|.+.+..++..||.||.++..... .+....+
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~ 690 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSY 690 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 234445567888999999999999976321100 1234567888889988888899999999999997432 2222222
Q ss_pred h-HHHHHHHHHHhhhhchhhHHHHHHHHHHhhccc-cc-cc-HHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHH
Q 001675 541 L-PQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE-MA-PY-ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (1033)
Q Consensus 541 l-~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~-i~-p~-~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (1033)
+ ...+..|+++++..+.+....++..+..-+.+. .. -. ....+. .+.++++++... .+ .....
T Consensus 691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~----~Lv~lLr~G~~~-----~k----~~Aa~ 757 (2102)
T PLN03200 691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIIL----PLTRVLREGTLE-----GK----RNAAR 757 (2102)
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHH----HHHHHHHhCChH-----HH----HHHHH
Confidence 2 235666777776655544444444443222210 00 00 011223 333455543311 12 22333
Q ss_pred HHHHHHHhccCChH--HHHHHHhhHHHHHHHHcccCchhHH--HHHHHHHHHhhhcC--CCCCHhHHHHHHHHHHHhhhh
Q 001675 617 AISTILESVSRLPH--LFVQIEPTLLPIMRRMLTTDGQEVF--EEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADW 690 (1033)
Q Consensus 617 ~i~~li~~~~~~~~--~~~~l~~~~~p~i~~il~~~~~~~~--~~~l~ll~~l~~~~--~~isp~l~~l~~~l~~~~~~~ 690 (1033)
++..+.+.-..+.. .+.+....+.|++. .|+..+.+-. -++++.+..+.+.. ...++..|..|-
T Consensus 758 AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~-~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~--------- 827 (2102)
T PLN03200 758 ALAQLLKHFPVDDVLKDSVQCRGTVLALVD-LLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLA--------- 827 (2102)
T ss_pred HHHHHHhCCChhHHHHHHHHHhCcHHHHHH-HHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHH---------
Confidence 44444443221111 12223445555544 4544443333 35888888888642 345556666552
Q ss_pred HhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHH
Q 001675 691 AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLR 770 (1033)
Q Consensus 691 ~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~ 770 (1033)
+. +..+.+|-.++.. .+|...+.-++++.++-.+. ..++..++-+.+ .-+.
T Consensus 828 --e~-p~~l~~l~~~l~~--------~~p~~~~kai~il~~~~~~~----------~~~~~~~~~~~~--------~~~~ 878 (2102)
T PLN03200 828 --EV-PSSLEPLVRCLAE--------GHPLVQDKAIEILSRLCRDQ----------PVVLGDLIANAS--------KCIS 878 (2102)
T ss_pred --hc-cCchHHHHHHHHc--------CChHHHHHHHHHHHHHhccC----------hhHHHHHHhccc--------chHH
Confidence 11 1112222122222 33455566677777765432 123333333322 2344
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhChHHHHHHHHhhCchHHHHHHHHHHHH
Q 001675 771 ITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQ 825 (1033)
Q Consensus 771 ~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~ 825 (1033)
.+-.|..++.+..++.--..++..+...+.+..+..|+..|.+..++....+.+.
T Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (2102)
T PLN03200 879 SLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLK 933 (2102)
T ss_pred HHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 4555555554455554333334444556778888899888888777777777665
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.41 E-value=0.05 Score=64.34 Aligned_cols=358 Identities=14% Similarity=0.127 Sum_probs=181.3
Q ss_pred hcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhc-chHH
Q 001675 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP-ILPQ 543 (1033)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p-~l~~ 543 (1033)
++..|+..++=.-.-+|.++.++-+.. .......++.+.+...|.+++..||..|+.+|.+++++.. ....- .=..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~--~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE--GAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH--HHHHHhcCcc
Confidence 444444333222345667777765422 2234578888999999999999999999999999987653 11111 1145
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHH-HHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 001675 544 LLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 622 (1033)
Q Consensus 544 il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li 622 (1033)
++..++.++...+.+....++..+..-.+. .+....++ ..+...+.++..+. +...+..+++++..+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~---------~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQS---------SDIVRCRVYELLVEIA 188 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhcc---------CHHHHHHHHHHHHHHH
Confidence 667777777665544333333333322221 12222231 11122222333321 1234456667666654
Q ss_pred HhccCChHHHHHHH-hhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhHH--HHHHHHHHHhhhhHhh------
Q 001675 623 ESVSRLPHLFVQIE-PTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAID------ 693 (1033)
Q Consensus 623 ~~~~~~~~~~~~l~-~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l~--~l~~~l~~~~~~~~~~------ 693 (1033)
. .+++....+. .-+++.+...+..++.-+--.+++++..+... +.-...+. .+++.+.+.+.+...+
T Consensus 189 ~---~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 189 S---HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred h---cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 3 3455544333 23667766667665555667999999999863 22223332 4677777776433222
Q ss_pred hhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC--chhchHHHHHH
Q 001675 694 FFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ--VDHWVEPYLRI 771 (1033)
Q Consensus 694 ~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~--~~~~l~~il~~ 771 (1033)
+++..+....+....++..+.. ....+++.+..++.+. +......|+..+..|-....|. +...-++-+..
T Consensus 265 ~l~g~~~f~g~la~~~~~~v~~-----~~p~~~~~l~~~~~s~--d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~ 337 (503)
T PF10508_consen 265 LLPGRMKFFGNLARVSPQEVLE-----LYPAFLERLFSMLESQ--DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKH 337 (503)
T ss_pred hhhhHHHHHHHHHhcChHHHHH-----HHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHH
Confidence 4455555555544445555542 2233333333444332 3332455666666665444332 10111223333
Q ss_pred HHHHHHh---hhhhHHHHHHHHHHHHHhhhChH-HHHHHHHhhCchHHHHHHHHHHHHHHHhh-cccccccch-hhhHHH
Q 001675 772 TVERLRR---AEKSYLKCLLVQVIADALYYNSS-LTLSILHKLGVATEVFNLWFQMLQQVKKN-GLRVNFKRE-HDKKVC 845 (1033)
Q Consensus 772 ~~~~l~~---~~~~~~~~~~l~v~~~~~~~~~~-~~l~~L~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~-~d~Kl~ 845 (1033)
++..+.. .....++...+..+++.+...+. ..-+++ .+...|++.+...+.+ -.....+.+ -|.|..
T Consensus 338 ~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~-------~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a 410 (503)
T PF10508_consen 338 VLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL-------SITESWYESLSGSPLSNLLMSLLKQPFPELRCA 410 (503)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH-------HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHH
Confidence 4443332 22445777777777777643332 111121 3456777765521111 011123333 456666
Q ss_pred HHHHHHHhc
Q 001675 846 CLGLTSLLA 854 (1033)
Q Consensus 846 ~lal~~ll~ 854 (1033)
++.+.+-|.
T Consensus 411 ~~~~l~~l~ 419 (503)
T PF10508_consen 411 AYRLLQALA 419 (503)
T ss_pred HHHHHHHHh
Confidence 665555554
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.37 E-value=0.001 Score=58.60 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=64.8
Q ss_pred hHHHHHHHHhhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhh
Q 001675 477 RAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (1033)
Q Consensus 477 r~ra~~~l~~~~~~~~~-~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 555 (1033)
|..+++.++..+...-. -.+++..+++-++.++.|++..||.+||.||.+++... ++.+.||.+.|+..|++++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 55667777776543311 22689999999999999999999999999999999874 6788899999999999999876
Q ss_pred ch
Q 001675 556 EN 557 (1033)
Q Consensus 556 ~~ 557 (1033)
+.
T Consensus 81 d~ 82 (97)
T PF12755_consen 81 DE 82 (97)
T ss_pred ch
Confidence 54
No 42
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.29 E-value=0.73 Score=55.23 Aligned_cols=269 Identities=10% Similarity=0.077 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhh-HHHHHHHHHHhhcc
Q 001675 496 NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVDKFGE 573 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~-~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~-l~~~l~~iv~~~~~ 573 (1033)
+.+...+..+.+.+... .+..-..|..++..|.... ....+.+..++...+..+..-.... -..++.++....+.
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~---~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~ 521 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSST---VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV 521 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc
Confidence 45667777777777654 4445557777887766542 2333444555555555444322222 34556655555543
Q ss_pred c-ccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccC--
Q 001675 574 E-MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD-- 650 (1033)
Q Consensus 574 ~-i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~-- 650 (1033)
+ +.|+.+.++..|.+ +....+ .-...-++|+++.++.. +|+...+.+..+.|.+-.++...
T Consensus 522 ~vl~~~~p~ild~L~q----las~~s---------~evl~llmE~Ls~vv~~---dpef~as~~skI~P~~i~lF~k~s~ 585 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQ----LASKSS---------DEVLVLLMEALSSVVKL---DPEFAASMESKICPLTINLFLKYSE 585 (1005)
T ss_pred eeccccchHHHHHHHH----Hccccc---------HHHHHHHHHHHHHHhcc---ChhhhhhhhcchhHHHHHHHHHhcC
Confidence 3 44555566555553 332221 11334567888777654 67777888888999887776432
Q ss_pred chhHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHhhhhH----hhhhhhhhhhhhhhhccCcccccccCCcchHHHHH
Q 001675 651 GQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWA----IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLW 726 (1033)
Q Consensus 651 ~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~----~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il 726 (1033)
.......+-+++..+++......|....+.|.++++++..+ .+-..-.+.+|..++++++..+-+ ..+...|
T Consensus 586 DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~----~l~~~~F 661 (1005)
T KOG2274|consen 586 DPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPN----LLICYAF 661 (1005)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccH----HHHHHHh
Confidence 22445555556666655444455667788899998875432 223334467888899999887553 4666677
Q ss_pred HHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCc-----hhc--hHHHHHHHHHHHHhhhhhHHHHHHH
Q 001675 727 SMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQV-----DHW--VEPYLRITVERLRRAEKSYLKCLLV 789 (1033)
Q Consensus 727 ~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~-----~~~--l~~il~~~~~~l~~~~~~~~~~~~l 789 (1033)
..+.++.-.. -+......|..++..++.+...++ .|- +..|++.+- +|-+.++..+...++
T Consensus 662 paVak~tlHs-dD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~s-qLLdp~~sds~a~~V 729 (1005)
T KOG2274|consen 662 PAVAKITLHS-DDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLS-QLLDPETSDSAAAFV 729 (1005)
T ss_pred HHhHhheeec-CChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHH-HHcCCccchhHHHHH
Confidence 6666654211 122224567888888887743322 222 335555544 555444444443333
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=97.26 E-value=0.27 Score=60.22 Aligned_cols=91 Identities=13% Similarity=0.031 Sum_probs=65.6
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhH--HHHHHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVV 506 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~--~~~~~~~l~ 506 (1033)
|...|--|++.++++... .+-+.+...|...+.+++|++|..|+.++.+.... +++. -...++.+.
T Consensus 118 Np~IRaLALRtLs~Ir~~---------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~---~pelv~~~~~~~~L~ 185 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRVS---------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD---DMQLFYQQDFKKDLV 185 (746)
T ss_pred CHHHHHHHHHHHHcCCcH---------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---CcccccccchHHHHH
Confidence 678888888888765431 23344455566667889999999999999997542 2222 123456666
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 507 SGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 507 ~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
.+|.|+++.|...|..+|..+....
T Consensus 186 ~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 186 ELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHhC
Confidence 7788999999999999999997654
No 44
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.26 E-value=1.6 Score=58.57 Aligned_cols=598 Identities=12% Similarity=0.077 Sum_probs=295.4
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhC-----------CCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcC
Q 001675 4 PSLALILQGALSP--NPEERKAAEHSLNQFQY-----------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNW 70 (1033)
Q Consensus 4 ~~L~~~L~~tls~--d~~~r~~AE~~L~~~~~-----------~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W 70 (1033)
..+..+++..-+. +++.|++|-..|..+.+ ..|+...|..++.+. +..+|..|+-.+.|.-..
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg--~~~vk~nAaaaL~nLS~~-- 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG--TLGAKVNAAAVLGVLCKE-- 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC--
Confidence 4566777766644 67888888888887765 256777888888653 567888777555555322
Q ss_pred CCCCCCcCCCCChhHHH-HH----HHHHHHHHhcCChHHHHHHHHHHHHHHHhhC-CCCc------hhHHHHHHHHhchh
Q 001675 71 APHEPNEQQKISQVDKD-MV----RDHILVFVAQVPPLLRVQLGECLKTIIHADY-PEQW------PHLLDWVKHNLQDQ 138 (1033)
Q Consensus 71 ~~~~~~~~~~l~~~~k~-~i----r~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~-P~~W------p~Ll~~l~~~l~s~ 138 (1033)
++-|. .+ -.-|+.+|.+.+...|...+.+|..|+...- ...| +..+|.|+..++++
T Consensus 89 ------------e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 89 ------------EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred ------------HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 11111 11 1246677777778889999999999987521 1234 56788899988876
Q ss_pred -h----H-HHHHHHHHHHHHHhccCCcccchHHHHHH-HHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhh-
Q 001675 139 -Q----V-YGALFVLRILSRKYEFKSDEERTPVYRIV-EETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL- 210 (1033)
Q Consensus 139 -~----~-~~~L~~L~~i~k~~~~~~~~~~~~l~~i~-~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~- 210 (1033)
. + ..+..+|..++..- +.+.. .++ ....|.+..++.+ ++ ...+.-++.++..+...
T Consensus 157 sk~d~~L~~~Av~AL~nLs~~~-----en~~~--~IIeaGaVp~LV~LLsS----~d-----~~lQ~eAa~aLa~Lass~ 220 (2102)
T PLN03200 157 NKQDKVVEGLLTGALRNLCGST-----DGFWS--ATLEAGGVDILVKLLSS----GN-----SDAQANAASLLARLMMAF 220 (2102)
T ss_pred chhhHHHHHHHHHHHHHHhcCc-----cchHH--HHHHcCCHHHHHHHHcC----CC-----HHHHHHHHHHHHHHHcCC
Confidence 1 2 23456777777532 21111 111 1245666665542 21 12233333333222111
Q ss_pred cCCc-ccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHH
Q 001675 211 EIPK-QLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 289 (1033)
Q Consensus 211 ~lp~-~~~~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f 289 (1033)
+-+. ...+... ++.++.++....+ . ++|..+...|..+.. ++ ++++. ..
T Consensus 221 ee~~~aVIeaGa----VP~LV~LL~sg~~-------~---------~VRE~AA~AL~nLAs--~s-----~e~r~---~I 270 (2102)
T PLN03200 221 ESSISKVLDAGA----VKQLLKLLGQGNE-------V---------SVRAEAAGALEALSS--QS-----KEAKQ---AI 270 (2102)
T ss_pred hHHHHHHHHCCC----HHHHHHHHccCCC-------h---------HHHHHHHHHHHHHhc--CC-----HHHHH---HH
Confidence 0010 0011122 3455555543211 1 233333333333332 11 12111 11
Q ss_pred HH-HhHHHHHHHHHHHHHhhhC---CcccCHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhh
Q 001675 290 QK-NYAGKILECHLNLLNRIRV---GGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLW 365 (1033)
Q Consensus 290 ~~-~~~~~~~~~~~~~l~~~~~---~~~~~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~w 365 (1033)
.. .-+|.+++ .+..... .......+..+++--+.+++.... .+-+.+.+++. +..|.+.-
T Consensus 271 v~aGgIp~LI~----lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~---~ll~~L~~ll~---------s~rd~~~~ 334 (2102)
T PLN03200 271 ADAGGIPALIN----ATVAPSKEFMQGEFAQALQENAMGALANICGGMS---ALILYLGELSE---------SPRSPAPI 334 (2102)
T ss_pred HHCCCHHHHHH----HHhCcchhhhccccchHHHHHHHHHHHHHhCCch---hhHHHHHHhhc---------ccchHHHH
Confidence 11 12333333 3321100 001233456667777777664431 11112221110 11111100
Q ss_pred hh--CHHHHHHHhcCcccccCCHH---HHHHHHHHHHHHhccc-chHHHHHHHH---------HHhhccccCCCC-----
Q 001675 366 DE--DPHEYVRKGYDIIEDLYSPR---TASMDFVSELVRKRGK-ENLQKFIQFI---------VGIFKRYDETPV----- 425 (1033)
Q Consensus 366 e~--Dp~efi~~~~d~~~d~~s~R---~aa~~ll~~L~~~~~~-~~~~~l~~~i---------~~~l~~~~~~~~----- 425 (1033)
.+ ..-.|+....+... ..... ..+...|..|+++... .+...+.+.+ ...+.....-+.
T Consensus 335 ada~gALayll~l~d~~~-~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL 413 (2102)
T PLN03200 335 ADTLGALAYALMVFDSSA-ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI 413 (2102)
T ss_pred HHHHhhHHHHHHhcCCch-hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh
Confidence 00 11223322222111 11111 1234456666665422 1122222222 111211000000
Q ss_pred CCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhH----HHHH
Q 001675 426 EYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN----FRKA 501 (1033)
Q Consensus 426 ~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~----~~~~ 501 (1033)
...+-..++.+..++..++..-.+.. ..-...-..+.++..|.++.+-+|..|+|.++..+... +.+. -...
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~--~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n--denr~aIieaGa 489 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLW--EALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV--DESKWAITAAGG 489 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHH--HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCC
Confidence 01134567777777777774311100 00000001233444556677889999999999987532 2211 1356
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchH--HHHHHHHHHhhhhchhh---HHHHHHHHHHhhccccc
Q 001675 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP--QLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMA 576 (1033)
Q Consensus 502 ~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~--~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~i~ 576 (1033)
++.+++.|.+++..+|..|+.||.+++.+. +..+..+. ..+..|+++++..+.+. ...+|..++.....+
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~---~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-- 564 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHS---EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-- 564 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh--
Confidence 889999999888899999999999998753 22233231 34555666666544333 334444444332221
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHH-HHHhhHHHHHHHHcccCchhHH
Q 001675 577 PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTTDGQEVF 655 (1033)
Q Consensus 577 p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~-~l~~~~~p~i~~il~~~~~~~~ 655 (1033)
.+..|+. ++... + +.....+++.+..++.....+..... ......+|.+...++++.....
T Consensus 565 -----~I~~Lv~----LLlsd--d-------~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ik 626 (2102)
T PLN03200 565 -----TISQLTA----LLLGD--L-------PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQ 626 (2102)
T ss_pred -----HHHHHHH----HhcCC--C-------hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHH
Confidence 2233332 23211 1 12233567788888776543221111 1123567899999988888999
Q ss_pred HHHHHHHHHhhhcCCCCCHhH--HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhc
Q 001675 656 EEVLEIVSYMTFFSPTISLEM--WSLWPLMMEALADWAIDFFPNILVPLDNYIS 707 (1033)
Q Consensus 656 ~~~l~ll~~l~~~~~~isp~l--~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~ 707 (1033)
+++..++..+....+.+...+ -...|.++..+...+.+...+....|.+...
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 999999999986554432222 3567777877765556666677777766654
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.91 Score=55.59 Aligned_cols=349 Identities=17% Similarity=0.175 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhch---h-----hHHHHHHHHHHHHHHhc
Q 001675 84 VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD---Q-----QVYGALFVLRILSRKYE 155 (1033)
Q Consensus 84 ~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s---~-----~~~~~L~~L~~i~k~~~ 155 (1033)
+--+.+-+.|++++.+.+..||...|..+++|+.+. | ++|.++++...-+ + .+||++.+|.++.++=
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG- 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-P---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG- 411 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-c---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-
Confidence 345577788888889999999999999999999887 4 4566655554432 1 6899999999998641
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHH-HHHHHhc
Q 001675 156 FKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI-LFLNVLE 234 (1033)
Q Consensus 156 ~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~-~~~~~l~ 234 (1033)
- .+...+..+.|.+..-+..-...+..+ .--.++-.+|=+.+++....-| ..+.+..+ ++..++.
T Consensus 412 ----l---Llps~l~dVvplI~kaL~Yd~~~G~~s-~G~~VRDaAcY~~WAf~Rays~------~~l~p~l~~L~s~LL~ 477 (1133)
T KOG1943|consen 412 ----L---LLPSLLEDVVPLILKALHYDVRRGQHS-VGQHVRDAACYVCWAFARAYSP------SDLKPVLQSLASALLI 477 (1133)
T ss_pred ----C---cchHHHHHHHHHHHHHhhhhhhhcccc-cccchHHHHHHHHHHHHhcCCh------hhhhHHHHHHHHHHHH
Confidence 0 122334445555443222111111100 0012344444344443321112 23344333 2222222
Q ss_pred CCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCccc
Q 001675 235 RPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYL 314 (1033)
Q Consensus 235 ~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (1033)
..+ . |.+ ..||+.+...+...+.|.|+... -+ .++.. ..|.
T Consensus 478 ~Al----F--Dre-------vncRRAAsAAlqE~VGR~~n~p~-------------------Gi----~Lis~---~dy~ 518 (1133)
T KOG1943|consen 478 VAL----F--DRE-------VNCRRAASAALQENVGRQGNFPH-------------------GI----SLIST---IDYF 518 (1133)
T ss_pred HHh----c--Cch-------hhHhHHHHHHHHHHhccCCCCCC-------------------ch----hhhhh---cchh
Confidence 211 0 111 46888888888888888776210 00 00000 0000
Q ss_pred CHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHH
Q 001675 315 PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV 394 (1033)
Q Consensus 315 ~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll 394 (1033)
+=.....|..=+...+ +.+..+...++.+++...++ -|+ -..|--|+.-|
T Consensus 519 sV~~rsNcy~~l~~~i------a~~~~y~~~~f~~L~t~Kv~-------HWd-----------------~~irelaa~aL 568 (1133)
T KOG1943|consen 519 SVTNRSNCYLDLCVSI------AEFSGYREPVFNHLLTKKVC-------HWD-----------------VKIRELAAYAL 568 (1133)
T ss_pred hhhhhhhHHHHHhHHH------HhhhhHHHHHHHHHHhcccc-------ccc-----------------HHHHHHHHHHH
Confidence 0011111111111000 11122233334444433322 231 12344455556
Q ss_pred HHHHHhcccchHHH-HHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchh----HHHHHHHHhhcccC
Q 001675 395 SELVRKRGKENLQK-FIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKS----ELERMLVQHVFPEF 469 (1033)
Q Consensus 395 ~~L~~~~~~~~~~~-l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~----~l~~~l~~~v~p~l 469 (1033)
..|...+++..... +.+++-..+. .+...+.|+..+.|.+...+....+... +-...+.+ ++|.+
T Consensus 569 ~~Ls~~~pk~~a~~~L~~lld~~ls---------~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~-ii~~~ 638 (1133)
T KOG1943|consen 569 HKLSLTEPKYLADYVLPPLLDSTLS---------KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLS-IIPPI 638 (1133)
T ss_pred HHHHHhhHHhhcccchhhhhhhhcC---------CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhh-hccHH
Confidence 66777766543311 2222222222 2668899999999988887765432111 11111111 23333
Q ss_pred CC---Ccc---cchHHHHHHHHhhhccccC-ChhHHHHHH-HHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 470 SS---PVG---HLRAKAAWVAGQYAHINFS-DQNNFRKAL-HSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 470 ~~---~~~---~lr~ra~~~l~~~~~~~~~-~~~~~~~~~-~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
.+ ..+ ++|...|.++-+++....+ .++.+..-+ ..+.+++.+++ .+|..|..|+..++...
T Consensus 639 ~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y 707 (1133)
T KOG1943|consen 639 CDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTY 707 (1133)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHH
Confidence 22 123 7788888888887653211 112333323 33344455666 78999999999998654
No 46
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.28 Score=57.59 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=67.0
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
|...|-.||+++..|--. .+.++..-.|-....++.|++|..|...+-+..+. +++...++...+=..
T Consensus 121 N~LiRasALRvlSsIRvp---------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL---d~e~k~qL~e~I~~L 188 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRVP---------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL---DPEQKDQLEEVIKKL 188 (968)
T ss_pred cHHHHHHHHHHHHhcchh---------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC---ChhhHHHHHHHHHHH
Confidence 668888888888765432 12333344454555688999999999999887653 333445777777778
Q ss_pred CCCCCCchHHHHHHHHHHHHHhc
Q 001675 509 LRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
|.|.++.|--.|+.|+..+|.+.
T Consensus 189 LaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 189 LADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred hcCCCCcchhHHHHHHHHhchhH
Confidence 89999999999999999998764
No 47
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.45 Score=54.89 Aligned_cols=323 Identities=14% Similarity=0.238 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhh
Q 001675 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 465 (1033)
Q Consensus 386 ~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v 465 (1033)
+|....+-........|.+-...+++.-.+.+++. .+-..|++.....|.++.++....+- .-.+ ...+
T Consensus 33 v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-------~~~~~~~~~~v~~~~~a~~~~~~d~~---~~~~-~~~~ 101 (569)
T KOG1242|consen 33 VRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-------HNDNLRNNVVVLEGTLAFHLQIVDPR---PISI-IEIL 101 (569)
T ss_pred hHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-------hhHHHhhhhHHHHHHHHHhccccCcc---hhHH-HHHH
Confidence 33333333444445556655556666666666542 25688999999999999998653221 1122 2223
Q ss_pred cccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHH
Q 001675 466 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (1033)
Q Consensus 466 ~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il 545 (1033)
+..+..|.+.+|.....|+.-+.-. ... ..-..+.+.+.++|......-|..|+..+..++.... ...++++ .++
T Consensus 102 ~~~~~tps~~~q~~~~~~l~~~~~~-~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~-i~~~~~~--~~l 176 (569)
T KOG1242|consen 102 LEELDTPSKSVQRAVSTCLPPLVVL-SKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG-IESLKEF--GFL 176 (569)
T ss_pred HHhcCCCcHHHHHHHHHHhhhHHHH-hhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH-Hhhhhhh--hHH
Confidence 3345567788888877777665432 111 1235566677777776666778888888888887752 4555553 456
Q ss_pred HHHHHHhhhhch----hhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh---hccC----------CCC------
Q 001675 546 DEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN---TAEA----------DED------ 602 (1033)
Q Consensus 546 ~~L~~ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~---~~~~----------d~~------ 602 (1033)
..+...+..-.+ +....+.++.....+....||...+...+...|....+ .+.. ++.
T Consensus 177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll 256 (569)
T KOG1242|consen 177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL 256 (569)
T ss_pred HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh
Confidence 666655543221 12333444455556666777766666666554411110 0000 000
Q ss_pred ------CCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhH
Q 001675 603 ------ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM 676 (1033)
Q Consensus 603 ------~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l 676 (1033)
-.+.++......++.++.+... .|..+....+.++|.+..++.+...+.-..+.+.+..+.... =.|.+
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~---ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi--dN~dI 331 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADC---APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI--DNPDI 331 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHh---chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh--ccHHH
Confidence 0001222223334444433322 355566677888999999997777777776666555544221 14567
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCC
Q 001675 677 WSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADK 736 (1033)
Q Consensus 677 ~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~ 736 (1033)
..+.|.+++++.+ ...+.++++..| +...|+..-+++-+..+..++.+-+...
T Consensus 332 ~~~ip~Lld~l~d-p~~~~~e~~~~L------~~ttFV~~V~~psLalmvpiL~R~l~eR 384 (569)
T KOG1242|consen 332 QKIIPTLLDALAD-PSCYTPECLDSL------GATTFVAEVDAPSLALMVPILKRGLAER 384 (569)
T ss_pred HHHHHHHHHHhcC-cccchHHHHHhh------cceeeeeeecchhHHHHHHHHHHHHhhc
Confidence 7888888888743 222445544333 2333443334467788888888888654
No 48
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=1.8 Score=55.05 Aligned_cols=304 Identities=13% Similarity=0.178 Sum_probs=148.9
Q ss_pred CchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHh--hcccCCCCcccchHHHHHHHHhhhccc--cCCh----hHHH
Q 001675 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH--VFPEFSSPVGHLRAKAAWVAGQYAHIN--FSDQ----NNFR 499 (1033)
Q Consensus 428 ~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~--v~p~l~~~~~~lr~ra~~~l~~~~~~~--~~~~----~~~~ 499 (1033)
..||.|||++.|+.-+-.+- +...+...+..++... +.-+...+-.-.--+++.++++.+-.. ..+. +.+.
T Consensus 1051 kewRVReasclAL~dLl~g~-~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGR-PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence 47999999999987655431 1111222333322221 111221111223345677777764211 1122 3444
Q ss_pred HHHHHHHhc-CCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhccccccc
Q 001675 500 KALHSVVSG-LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPY 578 (1033)
Q Consensus 500 ~~~~~l~~~-L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~ 578 (1033)
.++|.++.- +.+.-.-||..+..++-.+... ....++||++.++..|+...++.+..-+.++--.. .+.
T Consensus 1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~---~~~----- 1199 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL---INI----- 1199 (1702)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHHHHHHhh---hhh-----
Confidence 455544422 2233344787777777777766 46799999999999999988877664443332221 110
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCch-hHHHH
Q 001675 579 ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEE 657 (1033)
Q Consensus 579 ~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~-~~~~~ 657 (1033)
..+.+..+-. +.... . -+++||..++..+. -.++ +.+.|.+...+...+. .---.
T Consensus 1200 e~ealDt~R~-------s~aks------s-----pmmeTi~~ci~~iD--~~vL----eelip~l~el~R~sVgl~Tkvg 1255 (1702)
T KOG0915|consen 1200 ETEALDTLRA-------SAAKS------S-----PMMETINKCINYID--ISVL----EELIPRLTELVRGSVGLGTKVG 1255 (1702)
T ss_pred HHHHHHHHHH-------hhhcC------C-----cHHHHHHHHHHhhh--HHHH----HHHHHHHHHHHhccCCCCcchh
Confidence 1122222211 11110 1 35788888888863 2223 3455665555433221 11122
Q ss_pred HHHHHHHhhh-cCCCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcc-hHHHHHHHHHHHhcC
Q 001675 658 VLEIVSYMTF-FSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPD-YQQSLWSMVSSIMAD 735 (1033)
Q Consensus 658 ~l~ll~~l~~-~~~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~-~~~~il~i~~~~l~~ 735 (1033)
+-.+++.++. ....++|..-.++-.++..+++... .+.-.+..=..|+.+. ..|+ ....+......++.+
T Consensus 1256 ~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNe-sv~kafAsAmG~L~k~-------Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1256 CASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNE-SVRKAFASAMGYLAKF-------SSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred HHHHHHHHHHHhccccCcchhHHHHHHhhccccccH-HHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHhcc
Confidence 3334444443 3356677766777666666654322 1111111111222111 2222 333344444555543
Q ss_pred CCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHH
Q 001675 736 KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLR 777 (1033)
Q Consensus 736 ~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~ 777 (1033)
. ++....+|..+..|..+.++.+..|...|+..++-...
T Consensus 1328 ~---es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ 1366 (1702)
T KOG0915|consen 1328 D---ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMH 1366 (1702)
T ss_pred C---CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHh
Confidence 2 11124577777766666666667777777776654443
No 49
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=1.8 Score=53.79 Aligned_cols=325 Identities=10% Similarity=0.121 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc----c---ccchhhcchHHHHHHHHHHhhhhchhh--HHHHHHH
Q 001675 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC----R---DLNEIRPILPQLLDEFFKLMNEVENED--LVFTLET 566 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~----~---~~~~l~p~l~~il~~L~~ll~~~~~~~--l~~~l~~ 566 (1033)
+.+..+.+.+...+.-.. -.|..-|.+|+.+++.+ . .++.+..+..+.|+.+|++-....... ......+
T Consensus 514 ~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~ 592 (1176)
T KOG1248|consen 514 ESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRST 592 (1176)
T ss_pred HHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHH
Confidence 346777777777765332 47888899999999874 1 567788899999999999887643332 2222222
Q ss_pred HHHhhc-ccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHH
Q 001675 567 IVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRR 645 (1033)
Q Consensus 567 iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~ 645 (1033)
...... +.+.--..+++..|...........+ + .-.......+|.-+..+..+....+ +..+. .+.|.+..
T Consensus 593 ~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~--~---s~~~~~~~slLdl~~~~a~~~~e~~--vs~l~-~v~~~~e~ 664 (1176)
T KOG1248|consen 593 VLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD--E---SVASFKTLSLLDLLIALAPVQTESQ--VSKLF-TVDPEFEN 664 (1176)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhHhccch--h---hhhhHHHHHHHHHHHhhhccccchh--HHHHH-HhhHHhhc
Confidence 222222 22222334666666665444332111 1 1112222344555554444432211 22222 33343332
Q ss_pred HcccCchhHHHHHHHHHHHhhhcC---CCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchH
Q 001675 646 MLTTDGQEVFEEVLEIVSYMTFFS---PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQ 722 (1033)
Q Consensus 646 il~~~~~~~~~~~l~ll~~l~~~~---~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~ 722 (1033)
+...-.---++.++..+.... ..+...+..+|..+.+.++.......-.-+.+|...+..-+.++ .
T Consensus 665 ---~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~--------~ 733 (1176)
T KOG1248|consen 665 ---SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH--------C 733 (1176)
T ss_pred ---cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH--------H
Confidence 223345566777777776541 01122234555555555543322222333455555444333222 2
Q ss_pred HHHHHHHHH-HhcCCCCCCCccCchhHHHHHHH--HHcccC-chh---chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001675 723 QSLWSMVSS-IMADKNLEDGDIEPAPKLIEVVF--QNCKGQ-VDH---WVEPYLRITVERLRRAEKSYLKCLLVQVIADA 795 (1033)
Q Consensus 723 ~~il~i~~~-~l~~~~~~~~~~~~a~~ll~~il--~~~~~~-~~~---~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~ 795 (1033)
..+...+-. +|..+..++..+..++.||..|. ...-.. -+| .+..++..+...+.+..+.-.... | |-+++
T Consensus 734 ~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-I-vai~~ 811 (1176)
T KOG1248|consen 734 DLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-I-VAITH 811 (1176)
T ss_pred HHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-H-HHHHH
Confidence 222222222 22233344555677899988887 332111 122 445555555444443332222222 1 12222
Q ss_pred hhhChHHHHHHHHhhCchHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcccc
Q 001675 796 LYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTA 857 (1033)
Q Consensus 796 ~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~~ 857 (1033)
++++- -+.+.. ..+..++++.+..+. .+..+..-.++|+++.+...-
T Consensus 812 il~e~---~~~ld~-~~l~~li~~V~~~L~-----------s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 812 ILQEF---KNILDD-ETLEKLISMVCLYLA-----------SNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHH---hccccH-HHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHHHHcC
Confidence 22211 111110 223455555555544 345667778888888887643
No 50
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.93 E-value=0.077 Score=60.87 Aligned_cols=223 Identities=17% Similarity=0.263 Sum_probs=124.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccC-ChHHHHHHHhhHHHHHHHHcccC
Q 001675 572 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTD 650 (1033)
Q Consensus 572 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~-~~~~~~~l~~~~~p~i~~il~~~ 650 (1033)
++.+.|++..++++|...+ ..+...+ +. +++.|+-.++..+++ .......+.+.+..++..+..|.
T Consensus 17 ~~di~p~~~~ll~~Lf~~i----~~~~s~E-----Ne----ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP 83 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALI----EKPGSAE-----NE----YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP 83 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHH----HTT-STC------H----HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-
T ss_pred HHHhhhhHHHHHHHHHHHH----hcCCCcc-----ch----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4679999999999999743 3222111 22 567777777777643 23345566677777777776654
Q ss_pred c-hhHHHHHHHHHHHhhhcCCCCCHh-----HHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCc-ccccccCCcchHH
Q 001675 651 G-QEVFEEVLEIVSYMTFFSPTISLE-----MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGT-AHFLTCKEPDYQQ 723 (1033)
Q Consensus 651 ~-~~~~~~~l~ll~~l~~~~~~isp~-----l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~-~~~l~~~~~~~~~ 723 (1033)
. ..|..+.|+-++.++++...-.|. --.+||.+..+++++-.++++-++.+|...+...+ +.+-+ .|.
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~----~y~- 158 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPD----AYK- 158 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--T----TTG-
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcH----HHH-
Confidence 4 578999999999999875433343 24678887778777667888888877766665555 22221 222
Q ss_pred HHHHHHHHHhcCCCCCCC-c-cCchhHHHHHHHHHcccCc--hhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhh
Q 001675 724 SLWSMVSSIMADKNLEDG-D-IEPAPKLIEVVFQNCKGQV--DHWVEPYLRITVERLRR-AEKSYLKCLLVQVIADALYY 798 (1033)
Q Consensus 724 ~il~i~~~~l~~~~~~~~-~-~~~a~~ll~~il~~~~~~~--~~~l~~il~~~~~~l~~-~~~~~~~~~~l~v~~~~~~~ 798 (1033)
+++.-++.. ...+. + .-...+++.+++.+.+..+ .+.+.+++... ++|-. +.+....-.++..+... .
T Consensus 159 ---~L~~~Ll~p-~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvF-QkLi~sk~~D~~gF~LL~~iv~~--~ 231 (435)
T PF03378_consen 159 ---QLFPPLLSP-ALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVF-QKLIASKANDHYGFDLLESIVEN--L 231 (435)
T ss_dssp ---GGHHHHTSG-GGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHH-HHHHT-TTCHHHHHHHHHHHHHH--S
T ss_pred ---HHHHHHcCc-chhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHH-HHHHCCCCcchHHHHHHHHHHHH--C
Confidence 222223322 11111 1 1224578888888876654 36777777765 44433 32222222233333222 2
Q ss_pred ChHHHHHHHHhhCchHHHHHHHHHHHH
Q 001675 799 NSSLTLSILHKLGVATEVFNLWFQMLQ 825 (1033)
Q Consensus 799 ~~~~~l~~L~~~~~~~~~~~~w~~~~~ 825 (1033)
.+...-++ +..++...+.++.
T Consensus 232 p~~~l~~y------l~~I~~lll~RLq 252 (435)
T PF03378_consen 232 PPEALEPY------LKQIFTLLLTRLQ 252 (435)
T ss_dssp -HHHHGGG------HHHHHHHHHHHHH
T ss_pred CHHHHHHH------HHHHHHHHHHHHh
Confidence 22233333 3467777777777
No 51
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0079 Score=68.32 Aligned_cols=223 Identities=14% Similarity=0.212 Sum_probs=124.0
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcc-cchHHHHHHHHhhhccc-cCCh-hHHHHHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHIN-FSDQ-NNFRKALHSV 505 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~-~lr~ra~~~l~~~~~~~-~~~~-~~~~~~~~~l 505 (1033)
+-..+|-|.+++|.++.....-.++. +..=....++..++.+.+ -+.+.+.|+++.++... ..++ +....+++.+
T Consensus 165 ~~~v~eQavWALgNIagds~~~Rd~v--l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPDCRDYV--LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred cHHHHHHHHHHHhccccCChHHHHHH--HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 55789999999999997543211111 000011112223344444 46788999999998765 2233 6789999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHhccccchhhcch-HHHHHHHHHHhhhhchhhHHHHHHHHHHhh-c-ccccccHHHH
Q 001675 506 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLLDEFFKLMNEVENEDLVFTLETIVDKF-G-EEMAPYALGL 582 (1033)
Q Consensus 506 ~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~~~l~~~l~~iv~~~-~-~~i~p~~~~l 582 (1033)
..++.+.+.-|...||.|+..+.+... +.+.-.+ -.++..|..++...+.....-+|.++.... + +.-+. +. +
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~n--e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq-~v-i 318 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSN--EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ-VV-I 318 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCh--HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH-HH-H
Confidence 999999999999999999999988763 2222111 234555666665544444444554443211 1 11111 00 0
Q ss_pred HHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHH-HHHhhHHHHHHHHcccCchhHHHHHHHH
Q 001675 583 CQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTTDGQEVFEEVLEI 661 (1033)
Q Consensus 583 ~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~-~l~~~~~p~i~~il~~~~~~~~~~~l~l 661 (1033)
-..+...|..+..+... +.. ...+.=+|+.| ...+++... -+...++|.+-.+++....+.--++.=.
T Consensus 319 ~~~~L~~l~~ll~~s~~-------~~i-kkEAcW~iSNI---tAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 319 NSGALPVLSNLLSSSPK-------ESI-KKEACWTISNI---TAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred hcChHHHHHHHhccCcc-------hhH-HHHHHHHHHHh---hcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 01122233333332111 111 11122233333 223443333 3456789999999987776666677766
Q ss_pred HHHhhhc
Q 001675 662 VSYMTFF 668 (1033)
Q Consensus 662 l~~l~~~ 668 (1033)
+++++..
T Consensus 388 IsN~ts~ 394 (514)
T KOG0166|consen 388 ISNLTSS 394 (514)
T ss_pred HHhhccc
Confidence 6766643
No 52
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.82 E-value=0.65 Score=53.06 Aligned_cols=294 Identities=12% Similarity=0.124 Sum_probs=149.4
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchh-hcchHHHHHHHHHHhhhhchh--hHHHHHHHHHHhhcccc
Q 001675 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI-RPILPQLLDEFFKLMNEVENE--DLVFTLETIVDKFGEEM 575 (1033)
Q Consensus 499 ~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l-~p~l~~il~~L~~ll~~~~~~--~l~~~l~~iv~~~~~~i 575 (1033)
..+...+++.+.|+..|-|..+|.+..+++.... ...+ ......++..++..+++-+.. -+..+..+++...+-..
T Consensus 520 ~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg-~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~ 598 (975)
T COG5181 520 PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLG-RLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRG 598 (975)
T ss_pred hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcc-cccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhcc
Confidence 4566777888888888889999999888887653 1122 223345566666666553332 24455555554455556
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHH
Q 001675 576 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVF 655 (1033)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~ 655 (1033)
.||...|+..... .+++.. | +....+..+...++.++.++++.. .+. .+--++-.-|..+..+.+
T Consensus 599 kp~l~~ivStiL~----~L~~k~--p----~vR~~aadl~~sl~~vlk~c~e~~-~l~----klg~iLyE~lge~ypEvL 663 (975)
T COG5181 599 KPHLSMIVSTILK----LLRSKP--P----DVRIRAADLMGSLAKVLKACGETK-ELA----KLGNILYENLGEDYPEVL 663 (975)
T ss_pred CcchHHHHHHHHH----HhcCCC--c----cHHHHHHHHHHHHHHHHHhcchHH-HHH----HHhHHHHHhcCcccHHHH
Confidence 7888777765553 344322 1 123344455666666666665422 122 222233334445555666
Q ss_pred HHHHHHHHHhhhcC--CCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHh
Q 001675 656 EEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIM 733 (1033)
Q Consensus 656 ~~~l~ll~~l~~~~--~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l 733 (1033)
..++.-++++.... .+..|...++.|.+..++.+...-...+.+.++...-..+++.+-.. +.+..-|+.+..+-
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~r---EWMRIcfeLvd~Lk 740 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVR---EWMRICFELVDSLK 740 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHH
Confidence 66666666655322 23445556666666666644333344455555555555566543211 34444444443332
Q ss_pred cCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhh-hhHHHHHH-HHHHHHHhhhChHHHHHHHHhh-
Q 001675 734 ADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE-KSYLKCLL-VQVIADALYYNSSLTLSILHKL- 810 (1033)
Q Consensus 734 ~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~-~~~~~~~~-l~v~~~~~~~~~~~~l~~L~~~- 810 (1033)
+-+ .+- +..|-.-...|.+..+. .+++.+++..|...+ ...+-..+ +.+++- +.+|-.++..|-+-
T Consensus 741 s~n-Kei--RR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae--~cgpfsVlP~lm~dY 809 (975)
T COG5181 741 SWN-KEI--RRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAE--YCGPFSVLPTLMSDY 809 (975)
T ss_pred Hhh-HHH--HHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHh--hcCchhhHHHHHhcc
Confidence 211 010 12233333444443332 257777777775432 22222222 333332 35666666555442
Q ss_pred -----CchHHHHHHHHH
Q 001675 811 -----GVATEVFNLWFQ 822 (1033)
Q Consensus 811 -----~~~~~~~~~w~~ 822 (1033)
++...++...+-
T Consensus 810 ~TPe~nVQnGvLkam~f 826 (975)
T COG5181 810 ETPEANVQNGVLKAMCF 826 (975)
T ss_pred cCchhHHHHhHHHHHHH
Confidence 344555544433
No 53
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.81 E-value=2 Score=52.00 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=90.8
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 001675 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 535 (1033)
Q Consensus 456 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~ 535 (1033)
+..-...+.+..++++++|.+|+-|+.++|.. +.++.+..+++.+..++.|++.-||-.|+.|+..+.+..+ +
T Consensus 88 ~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--~ 160 (757)
T COG5096 88 ELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--D 160 (757)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--h
Confidence 34445567788899999999999999999553 4557889999999999999999999999999999997642 2
Q ss_pred hhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 001675 536 EIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (1033)
Q Consensus 536 ~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (1033)
..... ..+..+-.++.+.+..-+..++-++.+...+...+|...++..+.+
T Consensus 161 l~~~~--g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~ 211 (757)
T COG5096 161 LYHEL--GLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQ 211 (757)
T ss_pred hhhcc--cHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhh
Confidence 22221 1233334445555555577777777776666677787777766664
No 54
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.70 E-value=2 Score=50.44 Aligned_cols=173 Identities=14% Similarity=0.221 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhc-CCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccC--ChhHHHHHHHHHHhcCCCC
Q 001675 436 ALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS--DQNNFRKALHSVVSGLRDP 512 (1033)
Q Consensus 436 al~~lg~la~~l~~-~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~--~~~~~~~~~~~l~~~L~d~ 512 (1033)
.+..+|.++..+.. .++|.. .+...++-.|+++.|-+|-+|..++|..+.+.-. .+..+..+=..+...|...
T Consensus 778 ml~gfg~V~~~lg~r~kpylp----qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgee 853 (1172)
T KOG0213|consen 778 MLLGFGTVVNALGGRVKPYLP----QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEE 853 (1172)
T ss_pred hhhhHHHHHHHHhhccccchH----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcc
Confidence 45567777776654 234433 2355677788999999999999999999874311 2234455555666777754
Q ss_pred CCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhccccccc-HHHHHHHHHH
Q 001675 513 ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMAPY-ALGLCQNLAA 588 (1033)
Q Consensus 513 ~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~i~p~-~~~l~~~L~~ 588 (1033)
.+-|--.-..||+.+++... -....|=+.+|+..|..+++.-... .-..++..|..+..+.+.+- -..||=.|..
T Consensus 854 ypEvLgsILgAikaI~nvig-m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLle 932 (1172)
T KOG0213|consen 854 YPEVLGSILGAIKAIVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLE 932 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhcc-ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 43344344444444444331 2334555677777777777653322 23456666777666654431 1234434443
Q ss_pred HHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhcc
Q 001675 589 AFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 626 (1033)
Q Consensus 589 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~ 626 (1033)
. ++.|+ +.+.+ ...++++-|.++++
T Consensus 933 l-Lkahk-----------K~iRR-aa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 933 L-LKAHK-----------KEIRR-AAVNTFGYIAKAIG 957 (1172)
T ss_pred H-HHHHH-----------HHHHH-HHHhhhhHHHHhcC
Confidence 1 12233 22322 45567777777765
No 55
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.66 E-value=0.0014 Score=51.36 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHhhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001675 474 GHLRAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (1033)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~-~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~ 527 (1033)
|-+|..|+|.+|+++..... -..+...+++.++.+|.|++..||..||.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45899999999997653211 1157889999999999998889999999999864
No 56
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.31 Score=55.77 Aligned_cols=299 Identities=13% Similarity=0.155 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc--ccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhccc
Q 001675 498 FRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE 574 (1033)
Q Consensus 498 ~~~~~~~l~~~L~-d~~~~Vr~~Aa~al~~~~~~~~--~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~ 574 (1033)
...+++.++.+|. +.++-++..||.||.+++.... .+-.+..-.-++ +..++...+.+-...++-++....++.
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~---fi~Ll~s~~~~v~eQavWALgNIagds 183 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI---FIQLLSSPSADVREQAVWALGNIAGDS 183 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH---HHHHhcCCcHHHHHHHHHHHhccccCC
Confidence 3467888899986 5567799999999999998653 222222222223 445555444332333333333222222
Q ss_pred ccccHHHHH--HHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCch
Q 001675 575 MAPYALGLC--QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 652 (1033)
Q Consensus 575 i~p~~~~l~--~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~ 652 (1033)
|-.-+++ ...+..++++..... +......+.=+++.+.+.-...|. +.. ...++|++...+...+.
T Consensus 184 --~~~Rd~vl~~g~l~pLl~~l~~~~--------~~~~lRn~tW~LsNlcrgk~P~P~-~~~-v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 184 --PDCRDYVLSCGALDPLLRLLNKSD--------KLSMLRNATWTLSNLCRGKNPSPP-FDV-VAPILPALLRLLHSTDE 251 (514)
T ss_pred --hHHHHHHHhhcchHHHHHHhcccc--------chHHHHHHHHHHHHHHcCCCCCCc-HHH-HHHHHHHHHHHHhcCCH
Confidence 1111111 112223333443211 111111333344444444322332 232 35678999999988888
Q ss_pred hHHHHHHHHHHHhhhcCCCCCHhHH--HHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHH
Q 001675 653 EVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVS 730 (1033)
Q Consensus 653 ~~~~~~l~ll~~l~~~~~~isp~l~--~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~ 730 (1033)
+...+++-.++.++..+..-...+. .+.|.+.+++.....-.....++.+.| |-.|.+...+. -.....+..+.
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN-IvtG~d~QTq~---vi~~~~L~~l~ 327 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN-IVTGSDEQTQV---VINSGALPVLS 327 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc-eeeccHHHHHH---HHhcChHHHHH
Confidence 9999999999988866543333332 467788887753322234455666666 55555443221 01123445555
Q ss_pred HHhcCCCCCCCccCchhHHHHHHHHHcccCchhchH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhChHHHHHHHHh
Q 001675 731 SIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVE-PYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHK 809 (1033)
Q Consensus 731 ~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~-~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~ 809 (1033)
.++... ..+.-...||..+..|.--.+.+++.++. .++..++..|+..+. ..+.-..-.+.++...+...-+.+|-+
T Consensus 328 ~ll~~s-~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef-~~rKEAawaIsN~ts~g~~~qi~yLv~ 405 (514)
T KOG0166|consen 328 NLLSSS-PKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEF-DIRKEAAWAISNLTSSGTPEQIKYLVE 405 (514)
T ss_pred HHhccC-cchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccch-HHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 555421 12212344888888777644444544433 466666666665442 233333445556655544455555555
Q ss_pred hCchHHHH
Q 001675 810 LGVATEVF 817 (1033)
Q Consensus 810 ~~~~~~~~ 817 (1033)
.|+...|.
T Consensus 406 ~giI~plc 413 (514)
T KOG0166|consen 406 QGIIKPLC 413 (514)
T ss_pred cCCchhhh
Confidence 56554443
No 57
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.64 E-value=0.11 Score=56.94 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=113.8
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 001675 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 535 (1033)
Q Consensus 456 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~ 535 (1033)
.++.++.+.|.|.+++.++-+|.+|..++|-++-. +.+...+.++.+.+.+...+..|+..|..++--++.... ..
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll---d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g-~~ 98 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL---DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG-ID 98 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-ch
Confidence 56688999999999999999999999999999854 335667778888888865578899999999998887643 12
Q ss_pred hh--------hcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhh-cccccccHHHHHHHHHHHHHHHHhhccCCCCCCCh
Q 001675 536 EI--------RPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF-GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP 606 (1033)
Q Consensus 536 ~l--------~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~-~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 606 (1033)
.+ ......+++.+.+.+...+.+....+.+.+..-+ ...+.+ .+.++..|.- .|-++...+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll----~yF~p~t~~----- 168 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLL----LYFNPSTED----- 168 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH----HHcCcccCC-----
Confidence 22 1234567777777776554444455666666553 333443 3455555553 344333211
Q ss_pred hHHHHHHHHHHHHHHHHhc-cCChHHHHHHHhhHHHHHHHHccc
Q 001675 607 GALAAVGCLRAISTILESV-SRLPHLFVQIEPTLLPIMRRMLTT 649 (1033)
Q Consensus 607 ~~~~~~~~l~~i~~li~~~-~~~~~~~~~l~~~~~p~i~~il~~ 649 (1033)
+. .+-++++..+... ..++..-..+...++|++..+...
T Consensus 169 ~~----~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 169 NQ----RLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred cH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 11 2334555555554 244545566777888888776643
No 58
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.53 E-value=0.0091 Score=52.69 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=69.7
Q ss_pred hHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcC
Q 001675 432 QKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGL 509 (1033)
Q Consensus 432 ~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~L 509 (1033)
.|.|++.++.+++..+.+. ....++.+ .+.|+..+.++++.+|.-||..+...+... +.. .++.+++..+...+
T Consensus 2 ~R~ggli~Laa~ai~l~~~--~~~~l~~I-l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~-~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD--ISKYLDEI-LPPVLKCFDDQDSRVRYYACEALYNISKVA-RGEILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHh--HHHHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999888654 23334333 445667778899999999999999987642 333 57899999999999
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 001675 510 RDPELPVRVDSVFALRSFV 528 (1033)
Q Consensus 510 ~d~~~~Vr~~Aa~al~~~~ 528 (1033)
.|++.-||..| ..|.+++
T Consensus 78 ~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred cCCchhHHHHH-HHHHHHh
Confidence 99999999665 5555544
No 59
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.31 E-value=1.3 Score=50.79 Aligned_cols=191 Identities=14% Similarity=0.175 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCC-cchhHHHHHHHHh
Q 001675 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PYKSELERMLVQH 464 (1033)
Q Consensus 386 ~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~-~~~~~l~~~l~~~ 464 (1033)
+|..........++.+|- +.+++|+.....+ -.+|..|.+++.++..|+..+.... ++..++...
T Consensus 297 VRnvt~ra~~vva~algv---~~llpfl~a~c~S-------rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c---- 362 (975)
T COG5181 297 VRNVTGRAVGVVADALGV---EELLPFLEALCGS-------RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC---- 362 (975)
T ss_pred HHHHHHHHHHHHHHhhCc---HHHHHHHHHHhcC-------ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH----
Confidence 444445556666777753 3455666555433 1489999999999999998764321 122233232
Q ss_pred hcccCCCCcccchHHHHHHHHhhhcccc-CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHH
Q 001675 465 VFPEFSSPVGHLRAKAAWVAGQYAHINF-SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (1033)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~-~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~ 543 (1033)
+--.+.+.+.++|-.+...+|..++... -..+.+..++.-+-...+..--.+-.+=-.|...++... .+++...+-..
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm-~peYa~h~tre 441 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLM-SPEYACHDTRE 441 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccC-ChHhhhhhHHH
Confidence 3334466788888888888888766321 011344445444444333221112222333444444333 46777888899
Q ss_pred HHHHHHHHhhhhchhh--HHHHHHHHHHhhcccccc--cHHHHHHHHHHHHHH
Q 001675 544 LLDEFFKLMNEVENED--LVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWR 592 (1033)
Q Consensus 544 il~~L~~ll~~~~~~~--l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~ 592 (1033)
.++.++..++..+.+- ...+...++... +.++| +-.++...+.+.||+
T Consensus 442 ~m~iv~ref~spdeemkk~~l~v~~~C~~v-~~~tp~~lr~~v~pefF~~fw~ 493 (975)
T COG5181 442 HMEIVFREFKSPDEEMKKDLLVVERICDKV-GTDTPWKLRDQVSPEFFSPFWR 493 (975)
T ss_pred HHHHHHHHhCCchhhcchhHHHHHHHHhcc-CCCCHHHHHHhhcHHhhchHHH
Confidence 9999999888766542 223333344333 34555 355666666666655
No 60
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.13 E-value=0.073 Score=53.47 Aligned_cols=150 Identities=14% Similarity=0.188 Sum_probs=99.6
Q ss_pred hhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 001675 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (1033)
Q Consensus 431 ~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 510 (1033)
..|-.++.++|-++.... .-++++ ...+...|++++|.+|..|+.++++.....+-. .-..++..++.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~------~~ve~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik--~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP------NLVEPY-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK--VKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCc------HHHHhH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee--ehhhhhHHHHHHHc
Confidence 456666777776655432 234555 456777889999999999999999975432211 12445567777889
Q ss_pred CCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhh-----hhchhhHHHHHHHHHHhhcccccccHHHHHHH
Q 001675 511 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN-----EVENEDLVFTLETIVDKFGEEMAPYALGLCQN 585 (1033)
Q Consensus 511 d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~-----~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~ 585 (1033)
|++..||..|..++..+.... .++.+..++++++..|-.... ..+.+....++.-+...+.+ ......++++
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~-~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~k 150 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKR-NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVEK 150 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHHH
Confidence 999999999999999999874 367777777777776554432 12333456666666666653 1234467777
Q ss_pred HHHHHHH
Q 001675 586 LAAAFWR 592 (1033)
Q Consensus 586 L~~~~~~ 592 (1033)
|++-+..
T Consensus 151 l~~~~~~ 157 (178)
T PF12717_consen 151 LCQRFLN 157 (178)
T ss_pred HHHHHHH
Confidence 7765433
No 61
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=1.7 Score=51.20 Aligned_cols=82 Identities=15% Similarity=0.272 Sum_probs=70.7
Q ss_pred HHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcc
Q 001675 461 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 540 (1033)
Q Consensus 461 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~ 540 (1033)
+.+.+-.+|++|+-|+|+..+.|+ +..+.++.+..++|.+..||...+.-||-.|..|+-.+... .+.+-|-
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFL-----ckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~pD 171 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFL-----CKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIPD 171 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhh-----hhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcCC
Confidence 345567788999999999999999 56678899999999999999999999999999999998876 4678888
Q ss_pred hHHHHHHHHH
Q 001675 541 LPQLLDEFFK 550 (1033)
Q Consensus 541 l~~il~~L~~ 550 (1033)
.|.++...+.
T Consensus 172 apeLi~~fL~ 181 (948)
T KOG1058|consen 172 APELIESFLL 181 (948)
T ss_pred hHHHHHHHHH
Confidence 8888887653
No 62
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=6.8 Score=49.02 Aligned_cols=396 Identities=13% Similarity=0.118 Sum_probs=214.2
Q ss_pred hhcccCChhhHhh-hhhCHHHHHHHhcCcccccCCHHHHHHHHHHHHHHhcc--c------chH-HHHHHHHHHhhcccc
Q 001675 352 FPLMCFNDNDQKL-WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG--K------ENL-QKFIQFIVGIFKRYD 421 (1033)
Q Consensus 352 ~p~l~l~~~d~e~-we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~L~~~~~--~------~~~-~~l~~~i~~~l~~~~ 421 (1033)
+|-+|-.|-|.+. |.+- +-..-.-. ...-..|.+-++-|..|++... . +++ ..--+|+...++-|.
T Consensus 502 LP~FC~~P~Dl~~sF~~l---a~~l~~al-~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~yt 577 (1176)
T KOG1248|consen 502 LPGFCNYPVDLAESFTDL---APILGAAL-LKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYT 577 (1176)
T ss_pred ChhhhCCCccHHHHHHHH---HHHHHHHH-hcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 4777877777654 4321 10000000 0112567777888888877641 1 111 111223334444454
Q ss_pred CCCCCC-CchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCC----CCcccchHHHHHHHHhhhccccCChh
Q 001675 422 ETPVEY-KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS----SPVGHLRAKAAWVAGQYAHINFSDQN 496 (1033)
Q Consensus 422 ~~~~~~-~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~----~~~~~lr~ra~~~l~~~~~~~~~~~~ 496 (1033)
+.+.+. .....+.+.|..+.. ..+.... . ++..-|...+--... +..++.+.+-+..+-..+.+. ++.
T Consensus 578 q~~~~~~~~l~~~~~~L~~i~~--~~~~~t~--~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~--~e~ 650 (1176)
T KOG1248|consen 578 QTVAAGRKILASRSTVLEIIRV--DYFTVTP--T-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQ--TES 650 (1176)
T ss_pred CCCccccccHHHHHHHHHHHHH--HHhhccc--H-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccc--cch
Confidence 444332 234445555544432 2232221 1 222222222211111 123567777776665555543 555
Q ss_pred HHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhc
Q 001675 497 NFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG 572 (1033)
Q Consensus 497 ~~~~~~~~l~~~L-~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~ 572 (1033)
...+++ .+.+.. +..+..||-.|-.-|..++......-....++..|.+.|+.-++.+.... -..++..+++..+
T Consensus 651 ~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~ 729 (1176)
T KOG1248|consen 651 QVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS 729 (1176)
T ss_pred hHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc
Confidence 556666 344444 34467799999999999998743344556777888888887777665543 4567777777666
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhc--cCChHHHHHHHhhHHHHHHHHcccC
Q 001675 573 EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV--SRLPHLFVQIEPTLLPIMRRMLTTD 650 (1033)
Q Consensus 573 ~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~--~~~~~~~~~l~~~~~p~i~~il~~~ 650 (1033)
.+..-+ +...+.+.++-. +.. |. .....+..++-.|+.+-.+. ++.| .....+.++++|..-+..+
T Consensus 730 ~e~~~~---i~k~I~EvIL~~-Ke~--n~----~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd 797 (1176)
T KOG1248|consen 730 AEHCDL---IPKLIPEVILSL-KEV--NV----KARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGD 797 (1176)
T ss_pred HHHHHH---HHHHHHHHHHhc-ccc--cH----HHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhccc
Confidence 332222 222333332221 211 11 12233445666666544444 3344 1222345566666656555
Q ss_pred chhHHHH-HHHHHHHhhh-cCCCC-CHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHH
Q 001675 651 GQEVFEE-VLEIVSYMTF-FSPTI-SLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWS 727 (1033)
Q Consensus 651 ~~~~~~~-~l~ll~~l~~-~~~~i-sp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~ 727 (1033)
....... ++.+ +.+++ ...-+ ++.+.+++..+.-++.+...+.....+..+..++...|+..+. ++.+.++.
T Consensus 798 ~~~~~as~Ivai-~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~----~~~~~LL~ 872 (1176)
T KOG1248|consen 798 STRVVASDIVAI-THILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS----PHLEELLP 872 (1176)
T ss_pred HHHHHHHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh----hhHHHHHH
Confidence 5544443 3333 33443 33333 4456677777777765555667788889999999999998876 57777777
Q ss_pred HHHHHhcCCCCCCCccCchhHHHHHHHHHccc-CchhchHHHHHHHHHHHHh
Q 001675 728 MVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG-QVDHWVEPYLRITVERLRR 778 (1033)
Q Consensus 728 i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~-~~~~~l~~il~~~~~~l~~ 778 (1033)
-+..+..+... .-+..+-.|++.+++.++. .+..++|.-...+++++..
T Consensus 873 sll~ls~d~k~--~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK 922 (1176)
T KOG1248|consen 873 SLLALSHDHKI--KVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRK 922 (1176)
T ss_pred HHHHHHHhhhH--HHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHH
Confidence 66666543221 1145577889999999885 3777888666666666543
No 63
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=5 Score=47.78 Aligned_cols=233 Identities=18% Similarity=0.224 Sum_probs=124.9
Q ss_pred HHHHHHHhhcccCCCC-cccchHHHHHHHHhh-hccccCCh---hHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHh
Q 001675 457 LERMLVQHVFPEFSSP-VGHLRAKAAWVAGQY-AHINFSDQ---NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 457 l~~~l~~~v~p~l~~~-~~~lr~ra~~~l~~~-~~~~~~~~---~~~~~~~~~l~~~L~d-~~~~Vr~~Aa~al~~~~~~ 530 (1033)
+.+.+-......++++ ...+|-.+...+.-. -++.|+.. .+++.++..+...+.. ++.--|.+--..+..++..
T Consensus 523 ~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r 602 (978)
T KOG1993|consen 523 LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER 602 (978)
T ss_pred HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4444444555666665 445555555544332 33556543 3456666666666653 2333566777788888876
Q ss_pred ccccchhhcchHHHHHHHHHHhhhhchhh-----HHHHHHHHHHhhccc---ccccHHHHHHHHHHHHHHHHhhccCCCC
Q 001675 531 CRDLNEIRPILPQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEE---MAPYALGLCQNLAAAFWRCMNTAEADED 602 (1033)
Q Consensus 531 ~~~~~~l~p~l~~il~~L~~ll~~~~~~~-----l~~~l~~iv~~~~~~---i~p~~~~l~~~L~~~~~~~~~~~~~d~~ 602 (1033)
..+.+.|+...+++-+=.+=.+.+.+. +..+|..+|...+.. .-|++..+++. ....+ .|
T Consensus 603 --~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel--------~~D~~-sP- 670 (978)
T KOG1993|consen 603 --VSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIEL--------STDPS-SP- 670 (978)
T ss_pred --HHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHH--------hcCCC-CC-
Confidence 468899999998887766666655553 667888888887654 33443333322 11111 12
Q ss_pred CCChhHHHHHHHHHHHHHHHHhc-cCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCC-C-CHhHHHH
Q 001675 603 ADDPGALAAVGCLRAISTILESV-SRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT-I-SLEMWSL 679 (1033)
Q Consensus 603 ~~~~~~~~~~~~l~~i~~li~~~-~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~-i-sp~l~~l 679 (1033)
+...+..-| ++.=.+.+... .-.|+. -.+.+.+.|.|+. ..+-++.+++|+.+...-..+ + +.....+
T Consensus 671 --~hv~L~EDg-meLW~~~L~n~~~l~p~l-l~L~p~l~~~iE~-----ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i 741 (978)
T KOG1993|consen 671 --EHVYLLEDG-MELWLTTLMNSQKLTPEL-LLLFPHLLYIIEQ-----STENLPTVLMIISSYILLDNTVFLNDYAFGI 741 (978)
T ss_pred --ceeehhhhH-HHHHHHHHhcccccCHHH-HHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 111111111 12222223322 223433 2334444444443 345678888888876543221 1 2223355
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhccCc
Q 001675 680 WPLMMEALADWAIDFFPNILVPLDNYISRGT 710 (1033)
Q Consensus 680 ~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~ 710 (1033)
|..+...+.+-..+-++.++++++..+...+
T Consensus 742 ~k~~~~~l~dvr~egl~avLkiveili~t~~ 772 (978)
T KOG1993|consen 742 FKKLNDLLDDVRNEGLQAVLKIVEILIKTNP 772 (978)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH
Confidence 6666666554445667777788877766554
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=5.3 Score=47.73 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
+...|.-.|.+...+-+ +.. ++--++++.+..+|++++.++.+-|+..+|+.+ ++|+.+.++|-+-..
T Consensus 83 ~f~dKRiGYLaamLlLd---E~q----dvllLltNslknDL~s~nq~vVglAL~alg~i~-----s~EmardlapeVe~L 150 (866)
T KOG1062|consen 83 NFLDKRIGYLAAMLLLD---ERQ----DLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC-----SPEMARDLAPEVERL 150 (866)
T ss_pred CchHHHHHHHHHHHHhc---cch----HHHHHHHHHHHhhccCCCeeehHHHHHHhhccC-----CHHHhHHhhHHHHHH
Confidence 55666655554443322 332 455677888999999999999999999998864 457889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHH
Q 001675 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDE 547 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~ 547 (1033)
|+.+++-||-.|+.|..+|++.. ++...-|++..-+.
T Consensus 151 l~~~~~~irKKA~Lca~r~irK~--P~l~e~f~~~~~~l 187 (866)
T KOG1062|consen 151 LQHRDPYIRKKAALCAVRFIRKV--PDLVEHFVIAFRKL 187 (866)
T ss_pred HhCCCHHHHHHHHHHHHHHHHcC--chHHHHhhHHHHHH
Confidence 99999999999999999999874 45555555444333
No 65
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.90 E-value=0.098 Score=51.66 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=98.3
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccc-cCCh-hHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHHhcc
Q 001675 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQ-NNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEACR 532 (1033)
Q Consensus 456 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-~~~~-~~~~~~~~~l~~~L~d~~-~~Vr~~Aa~al~~~~~~~~ 532 (1033)
.+..| ...+...++++.+.-|..++.+++...+.. +.-- +....-+..+++.|+.++ ..+...|+.++..++..-.
T Consensus 22 ~l~~l-~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 22 ALHKL-VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHH-HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34344 455777778888888888888887765532 1000 345777888888888654 4588999999999997643
Q ss_pred -----ccchhhcchHHHHHHHHHHhhh-hchhhHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 001675 533 -----DLNEIRPILPQLLDEFFKLMNE-VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (1033)
Q Consensus 533 -----~~~~l~p~l~~il~~L~~ll~~-~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (1033)
.++...|+++.+++.++++++. ...+....++..++..+..-+.||...+-..+..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 4567899999999999999984 3345678889999999999999998887666554
No 66
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.71 E-value=3.7 Score=48.11 Aligned_cols=188 Identities=13% Similarity=0.201 Sum_probs=101.8
Q ss_pred CcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHH
Q 001675 472 PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 551 (1033)
Q Consensus 472 ~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~l 551 (1033)
..+-.+.=|.-+|.+|... | |+.-...+.+++.+..|.+..||..|.+.|..+|.+.+ .+++.+...|.++
T Consensus 34 g~~k~K~Laaq~I~kffk~-F--P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~------~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH-F--PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP------EHVSKVADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh-C--hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH------HHHhHHHHHHHHH
Confidence 3456788888899998653 3 35678899999999999999999999999999997632 3667777778888
Q ss_pred hhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccC---C
Q 001675 552 MNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR---L 628 (1033)
Q Consensus 552 l~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~---~ 628 (1033)
++.-+..++..+=.+++.-+.-+-. ..|...|-++......| ...+..++..|..-+..+.. .
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~d-------e~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGD-------EQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS--------HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred HhcccHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCc-------hHHHHHHHHHHHHHHhhCcHHHhh
Confidence 8754444444333444433322211 11222222332111111 13445667777666665532 1
Q ss_pred hHHHHHHHhhHHHHHHHHcccCch-hHHHHHHHHHHHhhhcC-CCCCHhHHHHHHHHHH
Q 001675 629 PHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMME 685 (1033)
Q Consensus 629 ~~~~~~l~~~~~p~i~~il~~~~~-~~~~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~ 685 (1033)
|. ..++..+.-.+..+|+ ++. +=++-.+++|.++-.+. ..-.+...++++.+.+
T Consensus 171 p~--~E~e~~i~~~ikkvL~-DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~e 226 (556)
T PF05918_consen 171 PQ--KEMEEFIVDEIKKVLQ-DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEE 226 (556)
T ss_dssp ----HHHHHHHHHHHHHHCT-T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHH
T ss_pred ch--HHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHH
Confidence 11 4578889999999995 322 33344455555543321 1122345566665554
No 67
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.70 E-value=0.014 Score=54.14 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=66.0
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHH--HHHHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVV 506 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~ 506 (1033)
+|..++.++.+++.++....+.. ..-+..-..+.+.+.+.++++-++..|+|++++++.........+ ..+++.++
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~ 97 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNI--QAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence 68999999999999987521110 000110112233444556788999999999999976421111211 23688899
Q ss_pred hcCCCCCCchHHHHHHHHHHHH
Q 001675 507 SGLRDPELPVRVDSVFALRSFV 528 (1033)
Q Consensus 507 ~~L~d~~~~Vr~~Aa~al~~~~ 528 (1033)
+.|++.+..++..|+.+|.+++
T Consensus 98 ~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 98 NLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHhh
Confidence 9999888889999999999876
No 68
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=1.6 Score=51.41 Aligned_cols=189 Identities=14% Similarity=0.220 Sum_probs=99.9
Q ss_pred CHHHHHHHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhh
Q 001675 368 DPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL 447 (1033)
Q Consensus 368 Dp~efi~~~~d~~~d~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l 447 (1033)
-|+||||-- .|+-||+-...+.++++++.+.+.|.-- ..+-.| -|++|++.|....
T Consensus 110 HPNEyiRG~----------------TLRFLckLkE~ELlepl~p~IracleHr-------hsYVRr-NAilaifsIyk~~ 165 (948)
T KOG1058|consen 110 HPNEYIRGS----------------TLRFLCKLKEPELLEPLMPSIRACLEHR-------HSYVRR-NAILAIFSIYKNF 165 (948)
T ss_pred CchHhhcch----------------hhhhhhhcCcHHHhhhhHHHHHHHHhCc-------chhhhh-hhheeehhHHhhh
Confidence 599998731 3566777777889999999998888642 133444 4555666665442
Q ss_pred hcCCcchhHHHHHHHHhhcccCCCCcccc------------hHHHHHHHHhhhc-cc------------------cCChh
Q 001675 448 KQTEPYKSELERMLVQHVFPEFSSPVGHL------------RAKAAWVAGQYAH-IN------------------FSDQN 496 (1033)
Q Consensus 448 ~~~~~~~~~l~~~l~~~v~p~l~~~~~~l------------r~ra~~~l~~~~~-~~------------------~~~~~ 496 (1033)
.. ..++...++..++..+. .|-- +.||..+++.-.. +. .+++.
T Consensus 166 ~~---L~pDapeLi~~fL~~e~---DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~ 239 (948)
T KOG1058|consen 166 EH---LIPDAPELIESFLLTEQ---DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA 239 (948)
T ss_pred hh---hcCChHHHHHHHHHhcc---CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH
Confidence 21 11122233333333222 2222 3344443332111 10 12333
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhccccc
Q 001675 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMA 576 (1033)
Q Consensus 497 ~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~ 576 (1033)
.-...+..+++.|.+++..|+..||.+|.++... +..+++-...++.-+.+ +.++..-.-++..+++ ++
T Consensus 240 ~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~l~~k---esdnnvklIvldrl~~-l~---- 308 (948)
T KOG1058|consen 240 EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYIDLLVK---ESDNNVKLIVLDRLSE-LK---- 308 (948)
T ss_pred HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHHHHHh---ccCcchhhhhHHHHHH-Hh----
Confidence 4456677777888888888999999999887765 45565555444443332 2222221122222221 11
Q ss_pred ccHHHHHHHHHHHHHHHHhhc
Q 001675 577 PYALGLCQNLAAAFWRCMNTA 597 (1033)
Q Consensus 577 p~~~~l~~~L~~~~~~~~~~~ 597 (1033)
+--..+++.|..-+++++..+
T Consensus 309 ~~~~~il~~l~mDvLrvLss~ 329 (948)
T KOG1058|consen 309 ALHEKILQGLIMDVLRVLSSP 329 (948)
T ss_pred hhhHHHHHHHHHHHHHHcCcc
Confidence 222345666666666766543
No 69
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=3.8 Score=48.83 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=96.0
Q ss_pred CchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 001675 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (1033)
Q Consensus 428 ~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (1033)
++|..|--|++.+|++--. .+-..+..-+...+++.+|++|..|..++.++....- +...-..++..+-.
T Consensus 98 ~np~iR~lAlrtm~~l~v~---------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~~~~~gl~~~L~~ 167 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVD---------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DLVEDSGLVDALKD 167 (734)
T ss_pred CCHHHHHHHhhceeeEeeh---------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hhccccchhHHHHH
Confidence 4899888888888765431 1222333444556678999999999999988865321 11223445556666
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHH
Q 001675 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 587 (1033)
Q Consensus 508 ~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 587 (1033)
.+.|+++.|-..|..|+..+.+... .....-..++++..++..+++...=.-..+|++........-.+ +.++++.+.
T Consensus 168 ll~D~~p~VVAnAlaaL~eI~e~~~-~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e-a~~i~~r~~ 245 (734)
T KOG1061|consen 168 LLSDSNPMVVANALAALSEIHESHP-SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE-AEDICERLT 245 (734)
T ss_pred HhcCCCchHHHHHHHHHHHHHHhCC-CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh-HHHHHHHhh
Confidence 6679998899899999999887652 12444456777888887777655444556667666655443222 445666555
Q ss_pred H
Q 001675 588 A 588 (1033)
Q Consensus 588 ~ 588 (1033)
.
T Consensus 246 p 246 (734)
T KOG1061|consen 246 P 246 (734)
T ss_pred h
Confidence 4
No 70
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=8.8 Score=46.10 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=105.5
Q ss_pred hcccCCCCcccchHHHHHHHHhhhcc-------ccCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc
Q 001675 465 VFPEFSSPVGHLRAKAAWVAGQYAHI-------NFSDQ---NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL 534 (1033)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~-------~~~~~---~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~ 534 (1033)
+...++++.+.+-.=|..++-+.-.+ .|..+ .....++..++.++.-+...=-.+-.+||-+++... .
T Consensus 503 li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~--~ 580 (960)
T KOG1992|consen 503 LIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL--Q 580 (960)
T ss_pred HHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC--H
Confidence 33345566677776677777665321 23332 234566666667766554455668888999998874 6
Q ss_pred chhhcchHHHHHHHHHHhhhhc----hh-hHHHHHHHH---HHhhcccccc-cHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 001675 535 NEIRPILPQLLDEFFKLMNEVE----NE-DLVFTLETI---VDKFGEEMAP-YALGLCQNLAAAFWRCMNTAEADEDADD 605 (1033)
Q Consensus 535 ~~l~p~l~~il~~L~~ll~~~~----~~-~l~~~l~~i---v~~~~~~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~ 605 (1033)
+.+.|+.+.++.+|.+++.++. +. ..+++.+++ +....+ ..| -...+...|...|..+..+.
T Consensus 581 ~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~-~~~~~vs~~e~aL~p~fq~Il~eD-------- 651 (960)
T KOG1992|consen 581 SAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK-ANPSAVSSLEEALFPVFQTILSED-------- 651 (960)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHH--------
Confidence 8888999999999999886532 21 244444444 433322 233 23345555665555555432
Q ss_pred hhHHHHHHHHHHHHHHHHhccC-ChHHHHHHHhhHHHHHHHHcccCc---hhHHHHHHHHHHHhhhc
Q 001675 606 PGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTDG---QEVFEEVLEIVSYMTFF 668 (1033)
Q Consensus 606 ~~~~~~~~~l~~i~~li~~~~~-~~~~~~~l~~~~~p~i~~il~~~~---~~~~~~~l~ll~~l~~~ 668 (1033)
-.-+.-+.+..++.+++..+. .|+ .+.|++..+|++.. ..-++....++.++++.
T Consensus 652 -I~EfiPYvfQlla~lve~~~~~ip~-------~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 652 -IQEFIPYVFQLLAVLVEHSSGTIPD-------SYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKT 710 (960)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCch-------hHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhc
Confidence 233455778888888777543 333 33444444444322 23344455555555543
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.36 E-value=1.2 Score=55.17 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=47.3
Q ss_pred cchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 475 HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 475 ~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
-.|..|+.++..++.+. .++..+..++|.+++++.|+..-||..|..+|..++..-
T Consensus 438 ~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V 493 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALV 493 (1431)
T ss_pred hhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 35778888888887754 355679999999999999999999999999999998764
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=9.1 Score=45.87 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=63.3
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
+...-=.||.++|.++..=. ..+..+++|. .+++++|++|..|..|+-+|.. +.|+....+++..-+.
T Consensus 120 nq~vVglAL~alg~i~s~Em-ardlapeVe~--------Ll~~~~~~irKKA~Lca~r~ir---K~P~l~e~f~~~~~~l 187 (866)
T KOG1062|consen 120 NQYVVGLALCALGNICSPEM-ARDLAPEVER--------LLQHRDPYIRKKAALCAVRFIR---KVPDLVEHFVIAFRKL 187 (866)
T ss_pred CeeehHHHHHHhhccCCHHH-hHHhhHHHHH--------HHhCCCHHHHHHHHHHHHHHHH---cCchHHHHhhHHHHHH
Confidence 44555667777777664310 1122333333 3456889999999999988754 4667778888888888
Q ss_pred CCCCCCchHHHHHHHHHHHHHhc
Q 001675 509 LRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
|.+.+..|-..+..-+..+|...
T Consensus 188 L~ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 188 LCEKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred HhhcCCceeeeHHHHHHHHHhcC
Confidence 99888888888888888888763
No 73
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.23 E-value=0.36 Score=50.76 Aligned_cols=166 Identities=14% Similarity=0.205 Sum_probs=96.1
Q ss_pred ccCCHHHHHHHHHHHHHHhc-ccchHHHHHHHHH---HhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHH
Q 001675 382 DLYSPRTASMDFVSELVRKR-GKENLQKFIQFIV---GIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 457 (1033)
Q Consensus 382 d~~s~R~aa~~ll~~L~~~~-~~~~~~~l~~~i~---~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l 457 (1033)
..|+.|..|..-|..++... +....+.+.+.+. ..+.....+ .+-..--.|+.+++.++..+... +...+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~~~--~~~~~ 92 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLGSH--FEPYA 92 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHGGG--GHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHh--HHHHH
Confidence 35889999999999998876 2333333444433 122111111 12345566677888888887653 22223
Q ss_pred HHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHH-HHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-ccc
Q 001675 458 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLN 535 (1033)
Q Consensus 458 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~-~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~-~~~ 535 (1033)
..+.+.++.-+.++..++|.+|..++..+.... + ....+ .+.+...+.+.++.||..++..+..++..+. ...
T Consensus 93 -~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~--~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 93 -DILLPPLLKKLGDSKKFIREAANNALDAIIESC--S--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp -HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred -HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC--C--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 333344555556778899999999998887643 2 22444 6777778889999999999999999998874 235
Q ss_pred hhhc--chHHHHHHHHHHhhhhchh
Q 001675 536 EIRP--ILPQLLDEFFKLMNEVENE 558 (1033)
Q Consensus 536 ~l~p--~l~~il~~L~~ll~~~~~~ 558 (1033)
.+.. .++.+.+.+.+++++.+.+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHH
Confidence 5544 3477888888887776554
No 74
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.14 Score=53.96 Aligned_cols=119 Identities=16% Similarity=0.249 Sum_probs=75.9
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcch---hHHHHHHHHhhcccCCCC--cccchHHHHHHHHhhhccccCCh--hHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYK---SELERMLVQHVFPEFSSP--VGHLRAKAAWVAGQYAHINFSDQ--NNFRKA 501 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~---~~l~~~l~~~v~p~l~~~--~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~ 501 (1033)
+--.+|-+.+++|.++..-..-.+|. .-++++ +..+.++ |--+-+.+-|+++..+.-.-.+| ....+.
T Consensus 170 ~~~V~eQavWALGNiAGDS~~~RD~vL~~galepl-----L~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqa 244 (526)
T COG5064 170 EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL-----LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQA 244 (526)
T ss_pred hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHH-----HHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHH
Confidence 34689999999999987533222221 122232 2233333 44567789999999976541122 568999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcch-HHHHHHHHHHhhh
Q 001675 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLLDEFFKLMNE 554 (1033)
Q Consensus 502 ~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~ 554 (1033)
++.+.+.+...++-|-+-||.||.-+.+... +.+.-.+ ..+..+|+.++..
T Consensus 245 lpiL~KLiys~D~evlvDA~WAiSYlsDg~~--E~i~avld~g~~~RLvElLs~ 296 (526)
T COG5064 245 LPILAKLIYSRDPEVLVDACWAISYLSDGPN--EKIQAVLDVGIPGRLVELLSH 296 (526)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhccCcH--HHHHHHHhcCCcHHHHHHhcC
Confidence 9999999987777788899999998887653 3332222 1334456665544
No 75
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.09 E-value=1 Score=47.30 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=66.0
Q ss_pred CchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHH---HhhcccCCCCcccchHHHHHHHHhhhccccCCh--hHHHHHH
Q 001675 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV---QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKAL 502 (1033)
Q Consensus 428 ~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~---~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~ 502 (1033)
.+|..+..++--+..+..+-. .......+-+.+. ..+...+.+...-+...||.+++.++... .+. .+...++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~-~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNA-PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hHhHHHHHHHHH
Confidence 489999999988887776541 1112223333333 33444555556678889999999987643 121 4678899
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 503 HSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 503 ~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
+.++..+.++...++..|..||..++..+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999876
No 76
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.92 E-value=0.75 Score=49.06 Aligned_cols=236 Identities=12% Similarity=0.131 Sum_probs=122.8
Q ss_pred hcccCCCCcccchHHHHHHHHhhhccccC---ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcch
Q 001675 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (1033)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~---~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l 541 (1033)
+-+.|++..+..|+||..+++..-+...+ +.+....++....+.|.|... -..|..++..++.... .-....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~--~~~~l~gl~~L~~~~~---~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC--VQPALKGLLALVKMKN---FSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh--HHHHHHHHHHHHhCcC---CChhhH
Confidence 44567888999999999999886543211 234456677777777765432 3344777777775432 122235
Q ss_pred HHHHHHHHHHhhh---h--chhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHH
Q 001675 542 PQLLDEFFKLMNE---V--ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (1033)
Q Consensus 542 ~~il~~L~~ll~~---~--~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (1033)
..+++.+++-..- . .--.+..+++.+++.+.+.+.....+.+..+++ .+ +++.|| +. ...+++
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~----~~-~gEkDP-----Rn--Ll~~F~ 146 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ----LI-DGEKDP-----RN--LLLSFK 146 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH----Hh-ccCCCH-----HH--HHHHHH
Confidence 5666666543321 1 112367888888888877775555565555543 33 234455 22 224555
Q ss_pred HHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCch---hHH-HHHHHHHHHhhhcCCCCCHhH-HHHHHHHHHHhhhhH
Q 001675 617 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ---EVF-EEVLEIVSYMTFFSPTISLEM-WSLWPLMMEALADWA 691 (1033)
Q Consensus 617 ~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~---~~~-~~~l~ll~~l~~~~~~isp~l-~~l~~~l~~~~~~~~ 691 (1033)
.+..++..... ++....+.+.+..++--.+.+... ... ++.-.-+...+.. +|.+ ...+|.+++-+.+..
T Consensus 147 l~~~i~~~~~~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s----~~~fa~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 147 LLKVILQEFDI-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS----TPLFAPFAFPLLLEKLDSTS 221 (262)
T ss_pred HHHHHHHhccc-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC----cHhhHHHHHHHHHHHHcCCC
Confidence 55555555442 333444444444443333443221 111 2222222222222 2333 346777777664332
Q ss_pred ----hhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHH
Q 001675 692 ----IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVS 730 (1033)
Q Consensus 692 ----~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~ 730 (1033)
.|.+..+..|+.+| |++.+. +|...+.+.+.
T Consensus 222 ~~~K~D~L~tL~~c~~~y---~~~~~~-----~~~~~iw~~lk 256 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIENY---GADSLS-----PHWSTIWNALK 256 (262)
T ss_pred cHHHHHHHHHHHHHHHHC---CHHHHH-----HHHHHHHHHHH
Confidence 23344444444433 555444 56666665554
No 77
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.81 E-value=0.49 Score=58.35 Aligned_cols=234 Identities=18% Similarity=0.258 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHHHHhccc-chHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHH
Q 001675 385 SPRTASMDFVSELVRKRGK-ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (1033)
Q Consensus 385 s~R~aa~~ll~~L~~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~ 463 (1033)
..|.+|.++|..|+..... ..+..+++|+...++.. ....+-+|+..+..+-..+++..+.. ..+|..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds--------~a~Vra~Al~Tlt~~L~~Vr~~~~~d---aniF~e 506 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDS--------EADVRATALETLTELLALVRDIPPSD---ANIFPE 506 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCc--------hHHHHHHHHHHHHHHHhhccCCCccc---chhhHh
Confidence 3577899999999887653 45778888888887642 34677777777766555555443322 245678
Q ss_pred hhcccCC----C-CcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc--CCCCCC---c--hHHHHHHHHHHHHHhc
Q 001675 464 HVFPEFS----S-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG--LRDPEL---P--VRVDSVFALRSFVEAC 531 (1033)
Q Consensus 464 ~v~p~l~----~-~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~d~~~---~--Vr~~Aa~al~~~~~~~ 531 (1033)
+++|.|+ + ...++|..-.-++++++..-. .+...-+.+-.. +++++- + -...-..+|.
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~------ 576 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH------ 576 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccccccccccchHHHHHH------
Confidence 8888876 2 456888888888888876321 111111111111 233221 0 0001111111
Q ss_pred cccchhhcchHHHHHHHHHHhhhhch---hhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhH
Q 001675 532 RDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 608 (1033)
Q Consensus 532 ~~~~~l~p~l~~il~~L~~ll~~~~~---~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 608 (1033)
.-+.+.+. .++...+. ..++..+--++.-|+.+=. -+-|+.+|+. |++ |. ..
T Consensus 577 -------~~V~~~v~---sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks--ND~iLshLiT-fLN-------Dk-----Dw 631 (1431)
T KOG1240|consen 577 -------HTVEQMVS---SLLSDSPPIVKRALLESIIPLCVFFGKEKS--NDVILSHLIT-FLN-------DK-----DW 631 (1431)
T ss_pred -------HHHHHHHH---HHHcCCchHHHHHHHHHHHHHHHHhhhccc--ccchHHHHHH-Hhc-------Cc-----cH
Confidence 11111111 22222111 1122222223333443211 1245677774 332 21 24
Q ss_pred HHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcC
Q 001675 609 LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (1033)
Q Consensus 609 ~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~ 669 (1033)
+.+...+++|.-+--.++. .++++.++|++.+.|+......+..+++-++.+++..
T Consensus 632 ~LR~aFfdsI~gvsi~VG~-----rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 632 RLRGAFFDSIVGVSIFVGW-----RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred HHHHHHHhhccceEEEEee-----eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 5677788888766555543 2357899999999997666667899999999988754
No 78
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.71 E-value=0.03 Score=37.77 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001675 501 ALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 501 ~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
++|.++++++|++..||..|+.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 79
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=14 Score=44.82 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCC-----CCCchHHHHHHHHHHHHHhcc-ccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhc
Q 001675 499 RKALHSVVSGLRD-----PELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG 572 (1033)
Q Consensus 499 ~~~~~~l~~~L~d-----~~~~Vr~~Aa~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~ 572 (1033)
...++.++..... .++-.--.+...|..++.-.. .+-.+-|+++-++++|- +.-.+......+.++++.++
T Consensus 503 ~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh---~sk~s~q~i~tl~tlC~~C~ 579 (982)
T KOG2022|consen 503 STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH---NSKESEQAISTLKTLCETCP 579 (982)
T ss_pred hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc---CchHHHHHHHHHHHHHHhhh
Confidence 4456666655432 233344456666666665432 56777888888777764 11122345556999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhcc--CChHHHHHHHhhHHHHHHHHcccC
Q 001675 573 EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS--RLPHLFVQIEPTLLPIMRRMLTTD 650 (1033)
Q Consensus 573 ~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~--~~~~~~~~l~~~~~p~i~~il~~~ 650 (1033)
+++.||+..++...-..++.. . .+......++.+|+-++.... +.|..+..+..-++.-++.++.++
T Consensus 580 ~~L~py~d~~~a~~~e~l~~~----~-------~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~ 648 (982)
T KOG2022|consen 580 ESLDPYADQFSAVCYEVLNKS----N-------AKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPG 648 (982)
T ss_pred hhCchHHHHHHHHHHHHhccc----c-------cCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999887766544331 1 122344567888888887765 223233333333444445555555
Q ss_pred ch
Q 001675 651 GQ 652 (1033)
Q Consensus 651 ~~ 652 (1033)
..
T Consensus 649 i~ 650 (982)
T KOG2022|consen 649 ID 650 (982)
T ss_pred CC
Confidence 43
No 80
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.49 E-value=0.037 Score=43.27 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=38.1
Q ss_pred hhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhh
Q 001675 430 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 487 (1033)
Q Consensus 430 w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~ 487 (1033)
|..|.+|++++|.++....+. ....+ +-+...+.+.++++++-+|..|||.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~--~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL--LQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH--HHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH--HHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999877554331 11122 22234455677778889999999999863
No 81
>PRK09687 putative lyase; Provisional
Probab=93.97 E-value=0.3 Score=52.80 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHH
Q 001675 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (1033)
Q Consensus 384 ~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~ 463 (1033)
..+|.+|...|..++...... .+.+...+...+.. .+|..|.++..++|.+... .-+ .
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D--------~~~~VR~~a~~aLg~~~~~--------~ai-----~ 162 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFD--------KSTNVRFAVAFALSVINDE--------AAI-----P 162 (280)
T ss_pred HHHHHHHHHHHhccccccccc-chHHHHHHHHHhhC--------CCHHHHHHHHHHHhccCCH--------HHH-----H
Confidence 467888888887775432111 11222222222221 3799999999999865421 011 3
Q ss_pred hhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001675 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (1033)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~ 527 (1033)
.+++.++++++.+|..|.+.+|++.. .+ ..+.+.++..|.|++..||..|+.+|..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~---~~----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKY---DN----PDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCC---CC----HHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 34455678888999999999998732 13 45677888888999999999999999873
No 82
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=20 Score=43.07 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=68.6
Q ss_pred hhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHH
Q 001675 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (1033)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~ 543 (1033)
.+.-.|.++++.+|+.|+.+++-.. =+-...-++-++-.+..|+.+.||-.||.||..+-.... .-.+ +
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR-----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~---e~k~---q 180 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR-----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP---EQKD---Q 180 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh---hhHH---H
Confidence 3445678899999999999985542 222234444555566789999999999999999887642 2222 4
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHHhhccc---ccccHHHHHHHHH
Q 001675 544 LLDEFFKLMNEVENEDLVFTLETIVDKFGEE---MAPYALGLCQNLA 587 (1033)
Q Consensus 544 il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~---i~p~~~~l~~~L~ 587 (1033)
+++.+-.||.+-+.--+-.++.++-+.+.+. |-++.-.+|+.|.
T Consensus 181 L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~ 227 (968)
T KOG1060|consen 181 LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLP 227 (968)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhcc
Confidence 4444444555443333334444444444443 3455555665544
No 83
>PRK09687 putative lyase; Provisional
Probab=93.73 E-value=0.43 Score=51.60 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHH
Q 001675 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (1033)
Q Consensus 384 ~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~ 463 (1033)
...|..|...|..|...... ....++.+..++.+ .++|..+.++..++|.++..-.. . .... ..
T Consensus 68 ~~vR~~A~~aLg~lg~~~~~--~~~a~~~L~~l~~~-------D~d~~VR~~A~~aLG~~~~~~~~---~---~~~a-~~ 131 (280)
T PRK09687 68 PIERDIGADILSQLGMAKRC--QDNVFNILNNLALE-------DKSACVRASAINATGHRCKKNPL---Y---SPKI-VE 131 (280)
T ss_pred HHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhcccccccc---c---chHH-HH
Confidence 35788888888776542211 11233333334221 13789999999999987532111 1 1111 22
Q ss_pred hhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHH
Q 001675 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (1033)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~ 543 (1033)
.+.+.+.++++.+|..|.+.+|++. + ...++.++..|.|++.-||..|+.||..+-. .-+.
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~~-----~----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~----------~~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVIN-----D----EAAIPLLINLLKDPNGDVRNWAAFALNSNKY----------DNPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhccC-----C----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC----------CCHH
Confidence 2334456778899999999997653 2 4477888999999988999999999998721 1234
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHH
Q 001675 544 LLDEFFKLMNEVENEDLVFTLETIVD 569 (1033)
Q Consensus 544 il~~L~~ll~~~~~~~l~~~l~~iv~ 569 (1033)
+.+.|..++.+.+.+.-..++..+..
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 55556666655444434445554443
No 84
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=22 Score=43.10 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcc-ccchhhc--chHHHHHHHHHHhhhhc-hhhHHHHHHHHHHhhc
Q 001675 498 FRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACR-DLNEIRP--ILPQLLDEFFKLMNEVE-NEDLVFTLETIVDKFG 572 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~-~~~Vr~~Aa~al~~~~~~~~-~~~~l~p--~l~~il~~L~~ll~~~~-~~~l~~~l~~iv~~~~ 572 (1033)
...++|.++..|+++ +.-+...||+||..+|+.++ ....+.. -+|-++++|+.+ .-++ -|....+++.|-++.+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI-EYIDVAEQSLQALEKISRRHP 287 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence 578899999999876 44599999999999999876 2222222 455556665432 1122 1346677777776665
Q ss_pred cccc
Q 001675 573 EEMA 576 (1033)
Q Consensus 573 ~~i~ 576 (1033)
..+.
T Consensus 288 ~AiL 291 (1051)
T KOG0168|consen 288 KAIL 291 (1051)
T ss_pred HHHH
Confidence 5443
No 85
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.41 E-value=0.78 Score=57.56 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.0
Q ss_pred hhhChHHHHHHHHh
Q 001675 796 LYYNSSLTLSILHK 809 (1033)
Q Consensus 796 ~~~~~~~~l~~L~~ 809 (1033)
++.+|.....+|+.
T Consensus 545 ~~~~~~~~~~~l~d 558 (784)
T PF04931_consen 545 LYNGPEEAVDVLDD 558 (784)
T ss_pred HhcCChHHHHHHHH
Confidence 45567777777764
No 86
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.29 E-value=26 Score=43.05 Aligned_cols=416 Identities=17% Similarity=0.129 Sum_probs=208.6
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhC-------CCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCc
Q 001675 6 LALILQGA-LSPNPEERKAAEHSLNQFQY-------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNE 77 (1033)
Q Consensus 6 L~~~L~~t-ls~d~~~r~~AE~~L~~~~~-------~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~ 77 (1033)
+....+.. ..-++.+|+.++..+-.+.+ ..+....+.++..+.+ ..+|.+|. -=-..+-...+.
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Ddq--dsVr~~a~-~~~~~l~~l~~~----- 309 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQ--DSVREAAV-ESLVSLLDLLDD----- 309 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcch--hhHHHHHH-HHHHHHHHhcCC-----
Confidence 44444433 23557788888888776654 2345666666666643 57888653 333444444432
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCC-CCchhHHHHHHHHhchh--hHHHHHH-HHHHHHHH
Q 001675 78 QQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ--QVYGALF-VLRILSRK 153 (1033)
Q Consensus 78 ~~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~--~~~~~L~-~L~~i~k~ 153 (1033)
+.+....+-..+++...+..-.+|...+.....+...--| ..|+++.+.....+... ..+.+.. -..+++..
T Consensus 310 ----~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 310 ----DDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred ----chhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 1156666777777777778888888888888887776666 46999999998888766 2222221 11222222
Q ss_pred hccCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHh
Q 001675 154 YEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVL 233 (1033)
Q Consensus 154 ~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l 233 (1033)
.++ +.+. .-..+.++|.+..+... .+ ..++ .+...+ .+.+-+.+-....+....+.++..+
T Consensus 386 l~~---~~~~--~i~~~~ilp~~~~lv~d----~~-----~~vr-~a~a~~----~~~~~p~~~k~~ti~~llp~~~~~l 446 (759)
T KOG0211|consen 386 LNA---SCYP--NIPDSSILPEVQVLVLD----NA-----LHVR-SALASV----ITGLSPILPKERTISELLPLLIGNL 446 (759)
T ss_pred cCc---cccc--ccchhhhhHHHHHHHhc----cc-----chHH-HHHhcc----ccccCccCCcCcCccccChhhhhhc
Confidence 211 1011 01122334544433322 11 1111 111111 1111111111122333333333333
Q ss_pred cCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcc
Q 001675 234 ERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGY 313 (1033)
Q Consensus 234 ~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~ 313 (1033)
+...| .++-.+...+..+-...+... .....+..+|.+.... ..
T Consensus 447 ~de~~-----------------~V~lnli~~ls~~~~v~~v~g---------~~~~s~slLp~i~el~----------~d 490 (759)
T KOG0211|consen 447 KDEDP-----------------IVRLNLIDKLSLLEEVNDVIG---------ISTVSNSLLPAIVELA----------ED 490 (759)
T ss_pred chhhH-----------------HHHHhhHHHHHHHHhccCccc---------chhhhhhhhhhhhhhc----------cc
Confidence 32111 111111111111111100000 0001122222221110 01
Q ss_pred cCHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHH
Q 001675 314 LPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDF 393 (1033)
Q Consensus 314 ~~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~l 393 (1033)
..-++...+++++-..+.... ...+.+.+..++. .|.. +-.++.|.+|...
T Consensus 491 ~~wRvr~ail~~ip~la~q~~-~~~~~~~~~~l~~---------------~~l~-------------d~v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 491 LLWRVRLAILEYIPQLALQLG-VEFFDEKLAELLR---------------TWLP-------------DHVYSIREAAARN 541 (759)
T ss_pred hhHHHHHHHHHHHHHHHHhhh-hHHhhHHHHHHHH---------------hhhh-------------hhHHHHHHHHHHH
Confidence 123555555555554432211 1222333222221 1211 1247899999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCc
Q 001675 394 VSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPV 473 (1033)
Q Consensus 394 l~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~ 473 (1033)
+..++..+|.... ....+.+.+....+ .+|+.|-+.++++..++..+.... +..++- ..+.....++.
T Consensus 542 l~~l~~~~G~~w~--~~~~i~k~L~~~~q-----~~y~~R~t~l~si~~la~v~g~ei-~~~~Ll----p~~~~l~~D~v 609 (759)
T KOG0211|consen 542 LPALVETFGSEWA--RLEEIPKLLAMDLQ-----DNYLVRMTTLFSIHELAEVLGQEI-TCEDLL----PVFLDLVKDPV 609 (759)
T ss_pred hHHHHHHhCcchh--HHHhhHHHHHHhcC-----cccchhhHHHHHHHHHHHHhccHH-HHHHHh----HHHHHhccCCc
Confidence 9999999984321 11122233322111 279999999999999998875421 111222 22222334677
Q ss_pred ccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001675 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
|-+|-++++.+-.+....- .+..=..++|++...-.|++.-||+.|..|+..+-..
T Consensus 610 anVR~nvak~L~~i~~~L~-~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 610 ANVRINVAKHLPKILKLLD-ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred hhhhhhHHHHHHHHHhhcc-hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 8899999999988877542 2233456666666666799999999999999877654
No 87
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.10 E-value=1.5 Score=46.42 Aligned_cols=183 Identities=16% Similarity=0.199 Sum_probs=104.8
Q ss_pred cCC-CCcccchHHHHHHHHhhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHH
Q 001675 468 EFS-SPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (1033)
Q Consensus 468 ~l~-~~~~~lr~ra~~~l~~~~~~~~~~~-~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il 545 (1033)
.|. +..|+++.+|+..+|..+.+.+... -.-...++.+.+.|.++++-||..|..|+.++....+....++.|++.++
T Consensus 20 lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc 99 (254)
T PF04826_consen 20 LLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVC 99 (254)
T ss_pred HHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 444 4679999999999999877554222 12235678888999999999999999999999877656677888888887
Q ss_pred HHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhc
Q 001675 546 DEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV 625 (1033)
Q Consensus 546 ~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~ 625 (1033)
+..... ..+++.=...+..+.. +. +++....++..-+..|.+++..++. + ....++.+ +..+
T Consensus 100 ~~~~s~--~lns~~Q~agLrlL~n-Lt--v~~~~~~~l~~~i~~ll~LL~~G~~-------~--~k~~vLk~----L~nL 161 (254)
T PF04826_consen 100 EETVSS--PLNSEVQLAGLRLLTN-LT--VTNDYHHMLANYIPDLLSLLSSGSE-------K--TKVQVLKV----LVNL 161 (254)
T ss_pred HHHhcC--CCCCHHHHHHHHHHHc-cC--CCcchhhhHHhhHHHHHHHHHcCCh-------H--HHHHHHHH----HHHh
Confidence 776542 1122211223332221 11 2222222222223345567765431 1 22233333 3334
Q ss_pred cCChHHHHHH-HhhHHHHHHHHcccC-chhHHHHHHHHHHHhhhc
Q 001675 626 SRLPHLFVQI-EPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFF 668 (1033)
Q Consensus 626 ~~~~~~~~~l-~~~~~p~i~~il~~~-~~~~~~~~l~ll~~l~~~ 668 (1033)
+.+|.....+ ...+.+-+...++.+ ..+.+-.++.++.++.++
T Consensus 162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 4556544332 333444444555443 346677777777666543
No 88
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.94 E-value=10 Score=41.09 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=64.2
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCC---------------------------------ccc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP---------------------------------VGH 475 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~---------------------------------~~~ 475 (1033)
.|...+++-.+-..+.............++.++..++.|.|... ++.
T Consensus 15 ~Wtt~~s~~ia~~il~~~~~~~~~~~~~~~~~L~~~lrPlf~k~~~~~~t~~gr~~l~P~~~~~~~~~~~~~~~WK~~~~ 94 (282)
T PF10521_consen 15 PWTTEESAQIATSILEQFLSLSESPESIIERILIDTLRPLFSKSKNPRITSSGRKGLRPKLGFSFDDDELQRQPWKSNPG 94 (282)
T ss_pred CCccHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHhHHhcCCCCcccccccccccCCCCcccccccccccCCcccCCc
Confidence 56666666655555443332122223355666666666665421 122
Q ss_pred ch-HHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 001675 476 LR-AKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (1033)
Q Consensus 476 lr-~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~ 532 (1033)
++ ..-+|++.+-.+.. .-.+++.-++|.++..+.|.+..+|..++.++..|+....
T Consensus 95 ~~~~~l~w~v~~~~~~~-~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRP-WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred ccHHHHHHHHHhcCCcc-hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 33 34477776222111 0115688899999999999999999999999999999764
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=25 Score=41.66 Aligned_cols=168 Identities=17% Similarity=0.268 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhccccCCCCC--CCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHH
Q 001675 407 QKFIQFIVGIFKRYDETPVE--YKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVA 484 (1033)
Q Consensus 407 ~~l~~~i~~~l~~~~~~~~~--~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l 484 (1033)
..+.+.+..+|+.....|.. ...-..+.|.|+-.-.++-++...... +.. -.+.+-..+.+..+=+|+=|+.-.
T Consensus 278 ~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~l---l~~-~~~~Lg~fls~rE~NiRYLaLEsm 353 (938)
T KOG1077|consen 278 ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPEL---LSR-AVNQLGQFLSHRETNIRYLALESM 353 (938)
T ss_pred HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHH---HHH-HHHHHHHHhhcccccchhhhHHHH
Confidence 33445555566554433321 112356778887666666666443221 111 122233344555666888888877
Q ss_pred HhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhch---hhH
Q 001675 485 GQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---EDL 560 (1033)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~~L~-d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~---~~l 560 (1033)
.+.+...|. .+.++.....+++.|. +.+.-||-.|..-|..+|+.. ....|++.|++.+...+. +++
T Consensus 354 ~~L~ss~~s-~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~--------Nak~IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 354 CKLASSEFS-IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS--------NAKQIVAELLQYLETADYSIREEI 424 (938)
T ss_pred HHHHhccch-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh--------hHHHHHHHHHHHHhhcchHHHHHH
Confidence 777766553 3456777888999998 788899999999999999874 466788888888876554 344
Q ss_pred HHHHHHHHHhhcccccccHHHHHHHHH
Q 001675 561 VFTLETIVDKFGEEMAPYALGLCQNLA 587 (1033)
Q Consensus 561 ~~~l~~iv~~~~~~i~p~~~~l~~~L~ 587 (1033)
..-+.-+.+.|..++.-|...+++.+.
T Consensus 425 vlKvAILaEKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 425 VLKVAILAEKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 444445568888888878776666443
No 90
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.70 E-value=0.1 Score=48.13 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=59.0
Q ss_pred ccCCCCcccchHHHHHHHHhhhccccCCh---hHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcch-
Q 001675 467 PEFSSPVGHLRAKAAWVAGQYAHINFSDQ---NNFR-KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL- 541 (1033)
Q Consensus 467 p~l~~~~~~lr~ra~~~l~~~~~~~~~~~---~~~~-~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l- 541 (1033)
..+.++++.+|..|+++++.++... ++ .... .+++.++..|.+++..|+..|+.+|.+++.... ....-+.
T Consensus 14 ~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~ 89 (120)
T cd00020 14 SLLSSSDENVQREAAWALSNLSAGN--NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIVLE 89 (120)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHHHH
Confidence 3445566889999999999987631 11 2233 778889999999899999999999999998652 1111111
Q ss_pred HHHHHHHHHHhhhhc
Q 001675 542 PQLLDEFFKLMNEVE 556 (1033)
Q Consensus 542 ~~il~~L~~ll~~~~ 556 (1033)
..++..+.++++..+
T Consensus 90 ~g~l~~l~~~l~~~~ 104 (120)
T cd00020 90 AGGVPKLVNLLDSSN 104 (120)
T ss_pred CCChHHHHHHHhcCC
Confidence 235666666665543
No 91
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.57 E-value=0.13 Score=64.47 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHH
Q 001675 92 HILVFVAQVPPLLRVQLGECLKTII 116 (1033)
Q Consensus 92 ~Ll~~l~~~~~~ir~~la~~i~~Ia 116 (1033)
+|+.+|.++-..-|.-.+.+++.|.
T Consensus 7 RLirGl~S~r~~aR~Gfs~~Lte~l 31 (784)
T PF04931_consen 7 RLIRGLASSRESARLGFSLALTELL 31 (784)
T ss_pred HHhcccCCChHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=92.51 E-value=2.4 Score=51.47 Aligned_cols=117 Identities=9% Similarity=0.007 Sum_probs=64.3
Q ss_pred hHhHHHHHHHHHHHhhhcCCc-chhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChh-HHHHHHHHHHhcC
Q 001675 432 QKDGALLAIGALCDKLKQTEP-YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN-NFRKALHSVVSGL 509 (1033)
Q Consensus 432 ~keaal~~lg~la~~l~~~~~-~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~-~~~~~~~~l~~~L 509 (1033)
....+++++..+++...-... .+.++-..|.. .|.+.+.-+..-+..++.+.+-+...... .-..+++.++..+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~----~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVK----CLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHH----HHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 344667777777765421100 01122223332 33445555666677777777643211111 2345788888888
Q ss_pred CCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhh
Q 001675 510 RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (1033)
Q Consensus 510 ~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 554 (1033)
.+++..++..|..+|.++..+......+.. ..++..|..++..
T Consensus 341 ~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d 383 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKD 383 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCC
Confidence 888777888899999988876542232221 1244455555554
No 93
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.40 E-value=6.8 Score=39.23 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=57.0
Q ss_pred cccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHh
Q 001675 473 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (1033)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (1033)
||.+|..++.++|-++. . -+..+....+.+..+|.|+++.||..|..+|..++... .+ ..-+.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~-r--~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d----~i-k~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCI-R--YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED----MI-KVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHH-h--CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC----ce-eehhhhhHHHHHHH
Confidence 57889999999998764 2 33567889999999999999999999999999998753 22 22245556666666
Q ss_pred hhhc
Q 001675 553 NEVE 556 (1033)
Q Consensus 553 ~~~~ 556 (1033)
.+.+
T Consensus 73 ~D~~ 76 (178)
T PF12717_consen 73 VDEN 76 (178)
T ss_pred cCCC
Confidence 4433
No 94
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.35 E-value=0.26 Score=42.67 Aligned_cols=76 Identities=24% Similarity=0.219 Sum_probs=54.6
Q ss_pred CchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 001675 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (1033)
Q Consensus 428 ~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (1033)
.+|..|..++.++|.+.. ....+.+ ...++++++.+|..|++.+|++.+ ...++.+..
T Consensus 12 ~~~~vr~~a~~~L~~~~~---------~~~~~~L----~~~l~d~~~~vr~~a~~aL~~i~~---------~~~~~~L~~ 69 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGD---------PEAIPAL----IELLKDEDPMVRRAAARALGRIGD---------PEAIPALIK 69 (88)
T ss_dssp SSHHHHHHHHHHHHCCTH---------HHHHHHH----HHHHTSSSHHHHHHHHHHHHCCHH---------HHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC---------HhHHHHH----HHHHcCCCHHHHHHHHHHHHHhCC---------HHHHHHHHH
Confidence 378999999999983322 1233333 334478899999999999998752 446677777
Q ss_pred cCCC-CCCchHHHHHHHHH
Q 001675 508 GLRD-PELPVRVDSVFALR 525 (1033)
Q Consensus 508 ~L~d-~~~~Vr~~Aa~al~ 525 (1033)
.+.+ ++..||..|+.||.
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 7765 46678999999874
No 95
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.08 E-value=15 Score=40.44 Aligned_cols=137 Identities=14% Similarity=0.087 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcc-----cchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCC-cch---hHHH
Q 001675 388 TASMDFVSELVRKRG-----KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PYK---SELE 458 (1033)
Q Consensus 388 ~aa~~ll~~L~~~~~-----~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~-~~~---~~l~ 458 (1033)
..|..++.-++-..| ..++..+.+.+.+.+... . ...+.|-+++.++|.++-...... .+. ..++
T Consensus 104 ~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~----s--~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le 177 (309)
T PF05004_consen 104 ALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDS----S--ASPKARAACLEALAICTFVGGSDEEETEELMESLE 177 (309)
T ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCC----c--cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Confidence 345555555555543 234455555555665532 1 245678888889988776543321 222 2333
Q ss_pred HHHHHhhcccCCC--------CcccchHHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 001675 459 RMLVQHVFPEFSS--------PVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 528 (1033)
Q Consensus 459 ~~l~~~v~p~l~~--------~~~~lr~ra~~~l~~~~~~~~~~--~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~ 528 (1033)
.+|...+ +.... +.+-+.+.|+..-|-........ ...+...++.+...|.+++.-||+.|..+|.-+.
T Consensus 178 ~if~~~~-~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 178 SIFLLSI-LKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHh-cCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3332222 22111 13456666655444444322110 1456778899999999999999999999999888
Q ss_pred Hhc
Q 001675 529 EAC 531 (1033)
Q Consensus 529 ~~~ 531 (1033)
+..
T Consensus 257 E~~ 259 (309)
T PF05004_consen 257 ELA 259 (309)
T ss_pred HHh
Confidence 765
No 96
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.99 E-value=23 Score=39.17 Aligned_cols=120 Identities=14% Similarity=0.187 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHH
Q 001675 541 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 620 (1033)
Q Consensus 541 l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ 620 (1033)
+..++..+-+........++..++.+++.+.++.+.|+.+.++..+.........+.- .+-|-.+...+..+..
T Consensus 73 ~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~------~~yPe~r~~ff~LL~~ 146 (319)
T PF08767_consen 73 LDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDF------EEYPEHRVNFFKLLRA 146 (319)
T ss_dssp HHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTS------SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh------hhChHHHHHHHHHHHH
Confidence 3334444443333444557999999999999999999999999999988777765322 1345566677777777
Q ss_pred HHHhccCChHHHHHHH----hhHHHHHHHHcccCchhHHHHHHHHHHHhhhcC
Q 001675 621 ILESVSRLPHLFVQIE----PTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (1033)
Q Consensus 621 li~~~~~~~~~~~~l~----~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~ 669 (1033)
+++.. +..+.++. ..++..+...+.+...+..+.+++++..++.+.
T Consensus 147 i~~~~---f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 147 INEHC---FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHH---THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh---HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 77764 11222221 233344445566777789999999888887543
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.80 E-value=0.097 Score=45.46 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=41.4
Q ss_pred CCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001675 470 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (1033)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~ 527 (1033)
+++++.+|..|++++|++.. ..+++.++..++|+++.||..|+.+|..+
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGD---------PEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 57889999999999985532 36677888888999999999999999976
No 98
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.42 E-value=5 Score=39.60 Aligned_cols=101 Identities=18% Similarity=0.299 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHH
Q 001675 220 NVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILE 299 (1033)
Q Consensus 220 ~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~ 299 (1033)
+.-..|+..+..+++.+-| ..+++.++..+.+++.+-+. +..+...+..+.+|.|++
T Consensus 63 ~~~~~W~~~Ll~~L~~~~~----------------~~~~~~ai~~L~~l~~~~~~-------~p~l~Rei~tp~l~~~i~ 119 (165)
T PF08167_consen 63 SHGSQWLRALLSILEKPDP----------------PSVLEAAIITLTRLFDLIRG-------KPTLTREIATPNLPKFIQ 119 (165)
T ss_pred HHHHHHHHHHHHHHcCCCC----------------HHHHHHHHHHHHHHHHHhcC-------CCchHHHHhhccHHHHHH
Confidence 5668999999999997432 25777899999999986432 223444566778999999
Q ss_pred HHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhc
Q 001675 300 CHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPL 354 (1033)
Q Consensus 300 ~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~ 354 (1033)
.++++++. ......+++.+..++..- -..++|+... ++..+.++
T Consensus 120 ~ll~l~~~--------~~~~~~~l~~L~~ll~~~--ptt~rp~~~k-i~~~l~~l 163 (165)
T PF08167_consen 120 SLLQLLQD--------SSCPETALDALATLLPHH--PTTFRPFANK-IESALLSL 163 (165)
T ss_pred HHHHHHhc--------cccHHHHHHHHHHHHHHC--CccccchHHH-HHHHHHHH
Confidence 99888753 345567778888777521 1245565555 33334343
No 99
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=46 Score=40.20 Aligned_cols=160 Identities=13% Similarity=0.193 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhc--------CCcchhH
Q 001675 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ--------TEPYKSE 456 (1033)
Q Consensus 385 s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~--------~~~~~~~ 456 (1033)
.-|+.|..-|++++++|+..+...=|..+.+.|+.- .-.-|+.=+++-.+.-.+.. .+.-.++
T Consensus 38 eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D---------~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd 108 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD---------YMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDD 108 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc---------cCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhH
Confidence 347778888999999987655433333333445431 11222222222222222211 1111234
Q ss_pred HHHHHHHhhc----------ccCCCCcccchHHHHHHHHhhhccccCChh------HHHHHHHHHHhcCCCCCCchHHHH
Q 001675 457 LERMLVQHVF----------PEFSSPVGHLRAKAAWVAGQYAHINFSDQN------NFRKALHSVVSGLRDPELPVRVDS 520 (1033)
Q Consensus 457 l~~~l~~~v~----------p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~------~~~~~~~~l~~~L~d~~~~Vr~~A 520 (1033)
+..|+....+ ..+..-.-.+|.-++.+++..-.+. +.+ .++.-+..++..|.|..-|+|-.|
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r--~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR--PTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC--CHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 4444433221 1111123568999999998875543 332 234445667778889999999999
Q ss_pred HHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhc
Q 001675 521 VFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 556 (1033)
Q Consensus 521 a~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 556 (1033)
..-|..+...+..-..+.. ...++++||.++.+-+
T Consensus 187 iLlL~eL~k~n~~IQKlVA-FENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVA-FENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHccCchHHHHHH-HHHHHHHHHHHHHhcC
Confidence 9999999887642233333 3788899999987633
No 100
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.69 E-value=65 Score=41.95 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=78.0
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCCh-hHHHHHHHHHHh
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVS 507 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~-~~~~~~~~~l~~ 507 (1033)
.....+.+-.+.-.++..- ++...++.++ ++|+..+..+.+-||.+|+.|++...+.. +. -....+-.++-.
T Consensus 790 ~~~d~~~a~li~~~la~~r----~f~~sfD~yL-k~Il~~l~e~~ialRtkAlKclS~ive~D--p~vL~~~dvq~~Vh~ 862 (1692)
T KOG1020|consen 790 RFADDDDAKLIVFYLAHAR----SFSQSFDPYL-KLILSVLGENAIALRTKALKCLSMIVEAD--PSVLSRPDVQEAVHG 862 (1692)
T ss_pred ccccchhHHHHHHHHHhhh----HHHHhhHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHhcC--hHhhcCHHHHHHHHH
Confidence 4566777777776666542 2333565555 55666777788899999999999998753 11 123556667777
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHH
Q 001675 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDE 547 (1033)
Q Consensus 508 ~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~ 547 (1033)
-+.|++.-||.+|..-+.+|+-.. ++.+..|-..|.++
T Consensus 863 R~~DssasVREAaldLvGrfvl~~--~e~~~qyY~~i~er 900 (1692)
T KOG1020|consen 863 RLNDSSASVREAALDLVGRFVLSI--PELIFQYYDQIIER 900 (1692)
T ss_pred hhccchhHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHhh
Confidence 889999999999999999998763 45555666666554
No 101
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.48 E-value=39 Score=39.05 Aligned_cols=281 Identities=19% Similarity=0.260 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhhcc-ccCCCCCC-Cc---hhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHH
Q 001675 388 TASMDFVSELVRKRGKENLQKFIQFIVGIFKR-YDETPVEY-KP---YRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (1033)
Q Consensus 388 ~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~-~~~~~~~~-~~---w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~ 462 (1033)
..+++++..++++.+.+--+.++.-+...+.. ....|-.. .+ +..+......-+.++ .+.+...+. +...++.
T Consensus 115 ~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~-~l~~~~~~~-~~~~ll~ 192 (415)
T PF12460_consen 115 ELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILC-SLRKDVSLP-DLEELLQ 192 (415)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHH-cCCcccCcc-CHHHHHH
Confidence 34566777777766543333334333333321 00111110 11 233333333333333 343322221 4445544
Q ss_pred HhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhccccchhhcch
Q 001675 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (1033)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l 541 (1033)
..+--..+..+++.|..++.+++-+.. ++.+.+.+..++......+ .......+..+...+--+....-.+ -.|..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN-K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R--~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN-KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR--GHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc--CCchH
Confidence 433222344568999999999988876 3545556778888877777 3333334444443332222211001 12667
Q ss_pred HHHHHHHHHHhhhhchh-hHHHHHHHHHHhh--------cccccc-cHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHH
Q 001675 542 PQLLDEFFKLMNEVENE-DLVFTLETIVDKF--------GEEMAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAA 611 (1033)
Q Consensus 542 ~~il~~L~~ll~~~~~~-~l~~~l~~iv~~~--------~~~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~ 611 (1033)
..+++.|+.+++..+.. .....++-++.-. ...+.+ |-..+...+.+.+.+-.++..+ ...
T Consensus 270 ~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~---------~~k 340 (415)
T PF12460_consen 270 TELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD---------EIK 340 (415)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh---------hhH
Confidence 77888888888763322 2334444444221 122344 3334444444444333333221 134
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCC-CCCHhHHHHHHHHH
Q 001675 612 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-TISLEMWSLWPLMM 684 (1033)
Q Consensus 612 ~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~-~isp~l~~l~~~l~ 684 (1033)
..++.+++.+++.+. ..++..--+.++|++-..|+.+..+....+++.+..++...+ .+++.+..+.|.++
T Consensus 341 ~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 341 SNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 467888999998874 445555557899999999988888888899999998886553 23444445555444
No 102
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.79 E-value=58 Score=39.94 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=61.7
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHH-HHHHHh
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVVS 507 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~-~~~l~~ 507 (1033)
|...|-.|++.++.+-.. .+ ++. +..-|...++++|+++|..|..++.++-.. +++.+... .-.+..
T Consensus 105 N~~iR~~AlR~ls~l~~~-----el---~~~-~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~ 172 (757)
T COG5096 105 NEEIRGFALRTLSLLRVK-----EL---LGN-IIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILK 172 (757)
T ss_pred CHHHHHHHHHHHHhcChH-----HH---HHH-HHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHH
Confidence 678899999998876542 12 222 233455567899999999999999887653 33344444 333333
Q ss_pred -cCCCCCCchHHHHHHHHHHHHHh
Q 001675 508 -GLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 508 -~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
.+.|+++.|...|..++..+...
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 44689999998888888877654
No 103
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.39 E-value=1.5 Score=38.25 Aligned_cols=72 Identities=26% Similarity=0.445 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHH---HHHHHHHHhhccc
Q 001675 500 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEE 574 (1033)
Q Consensus 500 ~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~---~~l~~iv~~~~~~ 574 (1033)
..++.++..++|+.+|||.+|-..|.+++.... .....++.++..++..+++.++=... ..+.+++..+++.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 456778888999999999999999999998752 33445678888777777654432233 4444455555543
No 104
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=89.06 E-value=1.4 Score=43.65 Aligned_cols=89 Identities=27% Similarity=0.428 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhH---HHHHHHH---HHhh
Q 001675 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDL---VFTLETI---VDKF 571 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l---~~~l~~i---v~~~ 571 (1033)
+..+++..+..|...+-|-+.-|...+..++... ..+.+.|.+|+++..+-..++.-+.+.. ..+|..+ ....
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~-~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG-GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4778899999999988899999999999999983 5788999999999999999987666654 4455555 3446
Q ss_pred cccccccHHHHHHHHH
Q 001675 572 GEEMAPYALGLCQNLA 587 (1033)
Q Consensus 572 ~~~i~p~~~~l~~~L~ 587 (1033)
++.+.||..+|+..+.
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7888999888877665
No 105
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=72 Score=40.04 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCC-CCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHH
Q 001675 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVE-YKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (1033)
Q Consensus 384 ~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~-~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~ 462 (1033)
.-+|-+|+.=+..+..+.+......+++-+.+.++ |.+ ...|. +++.+++-+|..---......++.+.+.
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~-----p~e~~~aWH---gacLaLAELA~rGlLlps~l~dVvplI~ 426 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFN-----PAEDDSAWH---GACLALAELALRGLLLPSLLEDVVPLIL 426 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcC-----cCCchhHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 44888888888888888776554444444444332 222 23576 8888998888652211111123333333
Q ss_pred HhhcccCC----CCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHh-----cCCCCCCchHHHHHHHHHHHHHh
Q 001675 463 QHVFPEFS----SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS-----GLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 463 ~~v~p~l~----~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~-----~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
.-+.-+-. +....+|-.||+++-.|+..- ++..+..+++.+.. .+-|+++-+|.+|+.|++..+--
T Consensus 427 kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray--s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 427 KALHYDVRRGQHSVGQHVRDAACYVCWAFARAY--SPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhcC--ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 22221111 122468999999887776532 33333444443333 34589999999999999988754
No 106
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.01 E-value=0.17 Score=59.63 Aligned_cols=9 Identities=44% Similarity=0.420 Sum_probs=5.0
Q ss_pred chHHHHHHH
Q 001675 476 LRAKAAWVA 484 (1033)
Q Consensus 476 lr~ra~~~l 484 (1033)
+|+-||.++
T Consensus 760 IRalAc~~L 768 (1516)
T KOG1832|consen 760 IRALACRVL 768 (1516)
T ss_pred HHHHHHHHH
Confidence 555555555
No 107
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.73 E-value=18 Score=43.90 Aligned_cols=184 Identities=13% Similarity=0.187 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHH---HHHHhhcccc
Q 001675 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLE---TIVDKFGEEM 575 (1033)
Q Consensus 499 ~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~---~iv~~~~~~i 575 (1033)
.+.++..+..+.|+.+|+|.+|...+..+++.......+. ...++...+..+..-++=...+++. ++++.+.+.+
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~--~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ--GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh--HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 4557888889999999999999999999999654333333 3567777776665544333456666 6667777665
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCC-CCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhH
Q 001675 576 APYALGLCQNLAAAFWRCMNTAEAD-EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 654 (1033)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~~~~~d-~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~ 654 (1033)
.| .|...+.. ..... + +. ....| |+|..++++.++ .+....+.+..++-+.+...+..+
T Consensus 804 l~-------dL~e~Y~s---~k~k~~~----d~-~lkVG--Eai~k~~qa~Ge---l~~~y~~~Li~tfl~gvrepd~~~ 863 (982)
T KOG4653|consen 804 LP-------DLSEEYLS---EKKKLQT----DY-RLKVG--EAILKVAQALGE---LVFKYKAVLINTFLSGVREPDHEF 863 (982)
T ss_pred HH-------HHHHHHHh---cccCCCc----cc-eehHH--HHHHHHHHHhcc---HHHHHHHHHHHHHHHhcCCchHHH
Confidence 54 33332211 11111 1 11 12223 788888888654 334444556666666665555567
Q ss_pred HHHHHHHHHHhhhcC-CCCCHhHHHHHHHHHHHhhhhHhhhh-hhhhhhhhh
Q 001675 655 FEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFF-PNILVPLDN 704 (1033)
Q Consensus 655 ~~~~l~ll~~l~~~~-~~isp~l~~l~~~l~~~~~~~~~~~~-~~~~~~L~~ 704 (1033)
-..++..+..+.+.. ..++..+.+++..+......++...+ .+.+.++..
T Consensus 864 RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~ 915 (982)
T KOG4653|consen 864 RASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAE 915 (982)
T ss_pred HHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHH
Confidence 777777777766543 45666667777777766544433222 444444443
No 108
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.34 E-value=55 Score=37.82 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHhcCCCCCC---chHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhh
Q 001675 503 HSVVSGLRDPEL---PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 553 (1033)
Q Consensus 503 ~~l~~~L~d~~~---~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~ 553 (1033)
|.++..|.|.+. .-....-.+|..++.. +..+.-.++.+++.+....+
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~---~~i~~~~~~~ll~kl~~~~~ 52 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTS---PQILETLSIRLLNKLSIVCQ 52 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHhc
Confidence 556677765433 3344555566666654 45555566677777766654
No 109
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=0.45 Score=57.72 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHHh
Q 001675 720 DYQQSLWSMVSSIM 733 (1033)
Q Consensus 720 ~~~~~il~i~~~~l 733 (1033)
.|++.++++|..+.
T Consensus 1530 Rf~qat~qVFhaL~ 1543 (3015)
T KOG0943|consen 1530 RFLQATAQVFHALS 1543 (3015)
T ss_pred HHHHHHHHHHhhee
Confidence 47777777776553
No 110
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.07 E-value=76 Score=38.03 Aligned_cols=286 Identities=13% Similarity=0.112 Sum_probs=150.1
Q ss_pred HHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhh
Q 001675 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 538 (1033)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~ 538 (1033)
-+.++.+--++++++.+=-+-|+-.+|+|. .+...+.+.+-++..|+++-+-||-.|...+-+++-.. ++.++
T Consensus 108 mL~tn~~rkdl~S~n~ye~giAL~GLS~fv-----TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY--PeAlr 180 (877)
T KOG1059|consen 108 MLTTNLLRKDLNSSNVYEVGLALSGLSCIV-----TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY--PEALR 180 (877)
T ss_pred HHHHHHHHHHhccCccchhhheeccccccc-----CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh--hHhHh
Confidence 344555666777777777777777787664 44577889999999999988889999999999998774 79999
Q ss_pred cchHHHHHHHHHHhhhhchhhH---HHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHH
Q 001675 539 PILPQLLDEFFKLMNEVENEDL---VFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 615 (1033)
Q Consensus 539 p~l~~il~~L~~ll~~~~~~~l---~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 615 (1033)
|-.|.+.+.| .+.+...+ +.++..+.++-.....|.++.+...|+. .. .+++.. .++
T Consensus 181 ~~FprL~EkL----eDpDp~V~SAAV~VICELArKnPknyL~LAP~ffklltt--------Ss-------NNWmLI-Kii 240 (877)
T KOG1059|consen 181 PCFPRLVEKL----EDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVT--------SS-------NNWVLI-KLL 240 (877)
T ss_pred hhHHHHHHhc----cCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhc--------cC-------CCeehH-HHH
Confidence 9888887764 33333333 3444444444455556666665554442 11 133322 222
Q ss_pred HHHHHHHHhcc-CChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHhhhhHhhh
Q 001675 616 RAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDF 694 (1033)
Q Consensus 616 ~~i~~li~~~~-~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~ 694 (1033)
. |+.++. -.| .+..-++|.+...+...+. +.-.++.+.+++.. .++..+-+-+..+.-|++.-. .+
T Consensus 241 K----LF~aLtplEP----RLgKKLieplt~li~sT~A--mSLlYECvNTVVa~--s~s~g~~d~~asiqLCvqKLr-~f 307 (877)
T KOG1059|consen 241 K----LFAALTPLEP----RLGKKLIEPITELMESTVA--MSLLYECVNTVVAV--SMSSGMSDHSASIQLCVQKLR-IF 307 (877)
T ss_pred H----HHhhccccCc----hhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheee--hhccCCCCcHHHHHHHHHHHh-hh
Confidence 2 222321 122 2334455555555433221 11112233333322 222232222222222221100 01
Q ss_pred hhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHH
Q 001675 695 FPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVE 774 (1033)
Q Consensus 695 ~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~ 774 (1033)
+.+--+-|+..-...-.-++. .+|..++.--+++.++|.++ +++-+..|..|+..|+.. .-+..|++.++.
T Consensus 308 iedsDqNLKYlgLlam~KI~k-tHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVsk------kNl~eIVk~LM~ 378 (877)
T KOG1059|consen 308 IEDSDQNLKYLGLLAMSKILK-THPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVSK------KNLMEIVKTLMK 378 (877)
T ss_pred hhcCCccHHHHHHHHHHHHhh-hCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhhh------hhHHHHHHHHHH
Confidence 111001111000000000111 34566777778888889765 666678899999888765 224455555555
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 001675 775 RLRRAEKSYLKCLLVQVIA 793 (1033)
Q Consensus 775 ~l~~~~~~~~~~~~l~v~~ 793 (1033)
.+..++...++..++..+.
T Consensus 379 ~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 379 HVEKAEGTNYRDELLTRII 397 (877)
T ss_pred HHHhccchhHHHHHHHHHH
Confidence 5544443445555444333
No 111
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=19 Score=43.67 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhccc
Q 001675 389 ASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPE 468 (1033)
Q Consensus 389 aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~ 468 (1033)
.|.+.+..||+.|++.+++-+..+..+.=.+ .. ...--+..||.+..+.+.++-+.+ |...+..- .+..
T Consensus 787 naI~gv~~Lcevy~e~il~dL~e~Y~s~k~k---~~-~d~~lkVGEai~k~~qa~Gel~~~---y~~~Li~t----fl~g 855 (982)
T KOG4653|consen 787 NAIRGVVSLCEVYPEDILPDLSEEYLSEKKK---LQ-TDYRLKVGEAILKVAQALGELVFK---YKAVLINT----FLSG 855 (982)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcccC---CC-ccceehHHHHHHHHHHHhccHHHH---HHHHHHHH----HHHh
Confidence 4566677899999998888777643332211 11 112456778888777776665543 33333333 3333
Q ss_pred CCCCcccchHHHHHHHHhhhccc-cCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhccccchhhcch
Q 001675 469 FSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (1033)
Q Consensus 469 l~~~~~~lr~ra~~~l~~~~~~~-~~~~~~~~~~~~~l~~~L~-d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l 541 (1033)
..+|....|+.+|-.+|+.+... |.-.+.+.+++..+++... |..+.||.+|+.-+..++... ...+.|+.
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t--g~dlLpil 928 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT--GEDLLPIL 928 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc--chhhHHHH
Confidence 45677789999999999987643 3333567888888888765 778889999999999998864 34555533
No 112
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.79 E-value=0.61 Score=55.32 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhh
Q 001675 317 RVTNLILQYLSNS 329 (1033)
Q Consensus 317 ~~~~~~l~fl~~~ 329 (1033)
.++.+++..|.-+
T Consensus 624 d~~~~Al~vL~i~ 636 (1516)
T KOG1832|consen 624 DLLQYALGVLHIV 636 (1516)
T ss_pred HHHHHHHhheeee
Confidence 3455555555443
No 113
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.92 E-value=74 Score=35.95 Aligned_cols=236 Identities=12% Similarity=0.223 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcc--hhHHH
Q 001675 384 YSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY--KSELE 458 (1033)
Q Consensus 384 ~s~R~aa~~ll~~L~~~~~~~---~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~--~~~l~ 458 (1033)
+..+.++++.+.-.+++|++. .++.+++.+.++|.+....+. .++ .-..++..++.++....-...+ ...+.
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~--~D~-lv~~al~FL~~v~~~~~~~~lf~~~~~L~ 186 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPK--YDI-LVSKALQFLSSVAESPHHKNLFENKPHLQ 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGG--GHH-HHHHHHHHHHHHHTSHHHHTTT-SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--ccH-HHHHHHHHHHHHHcchhHHHHhCCHHHHH
Confidence 567888888888888888653 344455555556655322211 122 2233444455544433211112 35677
Q ss_pred HHHHHhhcccCCCCcccchHHHHHHHHhhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchh
Q 001675 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI 537 (1033)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~-~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l 537 (1033)
+++.+.|+|.+. .|-.- ...|.+ +| |+.+.- +.. .|. .-.|.+|+.-++.++... ...+
T Consensus 187 ~Iie~VI~Pnl~-------~~e~D-~ElfEd----dP~EYIrrd----~e~-sd~-~TrR~AA~dfl~~L~~~~--~~~v 246 (370)
T PF08506_consen 187 QIIEKVIFPNLC-------LREED-EELFED----DPEEYIRRD----LEG-SDS-DTRRRAACDFLRSLCKKF--EKQV 246 (370)
T ss_dssp HHHHHTHHHHHS---------HHH-HHHHHH----SHHHHHHHH----SCS-S----SHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHhccCccC-------CCHHH-HHHHcc----CHHHHHHhh----ccc-ccc-CCcHHHHHHHHHHHHHHH--hHHH
Confidence 888888887654 11111 111111 22 343331 121 232 346889999999998774 3444
Q ss_pred hcchHHHHHHHHHHhhh------hchhhHHHHHHHHHHhhc---ccccc--cHHHHHHHHHHHHHHHHhhccCCCCCCCh
Q 001675 538 RPILPQLLDEFFKLMNE------VENEDLVFTLETIVDKFG---EEMAP--YALGLCQNLAAAFWRCMNTAEADEDADDP 606 (1033)
Q Consensus 538 ~p~l~~il~~L~~ll~~------~~~~~l~~~l~~iv~~~~---~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 606 (1033)
.+.+...++.++.-... -..+....++.++..+.. ..++. -..++.+-+.+.+..-+. ++.+ .
T Consensus 247 ~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~-----~ 320 (370)
T PF08506_consen 247 TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVN-----S 320 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS------S
T ss_pred HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCC-----C
Confidence 44444444444432211 112345566666654431 11111 111233333222111122 1111 2
Q ss_pred hHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhH
Q 001675 607 GALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 654 (1033)
Q Consensus 607 ~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~ 654 (1033)
.++....++..+.+.-..+. ++ ....++|.+...|..+..-.
T Consensus 321 ~piLka~aik~~~~Fr~~l~--~~----~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 321 HPILKADAIKFLYTFRNQLP--KE----QLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp -HHHHHHHHHHHHHHGGGS---HH----HHHHHHHHHHHHTTSS-HHH
T ss_pred CcchHHHHHHHHHHHHhhCC--HH----HHHHHHHHHHHHhCCCCcch
Confidence 56666666666655544432 22 33457788888887655433
No 114
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.83 E-value=32 Score=37.64 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=96.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhH
Q 001675 11 QGALSPNPEERKAAEHSLNQFQY-----TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVD 85 (1033)
Q Consensus 11 ~~tls~d~~~r~~AE~~L~~~~~-----~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~ 85 (1033)
-+..++|+.+|..|=.-|--+.- ...++..+.+.+.. + +..+|-.|.-.+=..+..|=...-+.....-....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 35678999999999888875543 22456667777743 3 77888877655545554332110000000012334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhccCC
Q 001675 86 KDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKS 158 (1033)
Q Consensus 86 k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~ 158 (1033)
...+-+.+.+.+.+.+..+|...++.++++.-.+--..||+++..++-..=++ .....-.||.-++..|.+.+
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence 56677778888877788999999999999998876666799888887665544 23455678888888887644
No 115
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=84.77 E-value=13 Score=42.67 Aligned_cols=258 Identities=11% Similarity=0.162 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcch-HHHHHHHHHHhhhhchhh---HHHHHHHHHHhh
Q 001675 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLLDEFFKLMNEVENED---LVFTLETIVDKF 571 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l-~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~ 571 (1033)
.++.-+|..+...+.+++.- . .+.++ ...+..|+.+++..+..+ +..++-.+...+
T Consensus 105 pHL~~vY~il~~~i~~~~~~-------------------~-~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~ 164 (409)
T PF01603_consen 105 PHLQLVYEILLRFIESPPFD-------------------P-AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKF 164 (409)
T ss_dssp HHHHHHHHHHHHHHTSTT---------------------C-CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHCcccc-------------------H-HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 46777777777666554321 1 22333 366777887777654433 444444444433
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhcc--CChHHHHHHHhhHHHHHHHHccc
Q 001675 572 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS--RLPHLFVQIEPTLLPIMRRMLTT 649 (1033)
Q Consensus 572 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~--~~~~~~~~l~~~~~p~i~~il~~ 649 (1033)
..+-.-+...+...|.+...+.. ...-...+|+.+++++.... -.++...-+...++|+... +
T Consensus 165 ----~~~r~~Ir~~i~~~~~~fi~e~~--------~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~---~ 229 (409)
T PF01603_consen 165 ----PNLRSFIRKSINNIFYRFIYETE--------RHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKS---P 229 (409)
T ss_dssp ----TTTHHHHHHHHHHHHHHHHHTTS----------STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGS---T
T ss_pred ----hhhHHHHHHHHHHHHHHHhcCcc--------cccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcC---C
Confidence 33444565666666666665322 22234478899999998754 2344444455677775542 3
Q ss_pred CchhHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHhh-h---hHhhhhhhhhhhhhhhhccCcccccccCCcchHHHH
Q 001675 650 DGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALA-D---WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSL 725 (1033)
Q Consensus 650 ~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~-~---~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i 725 (1033)
....|......++..++.+.+.++.. ++..+++.+= + -...++.++..++.. ..+++|. .....+
T Consensus 230 ~~~~y~~~L~~~~~~f~~kdp~l~~~---~i~~llk~WP~t~s~Kev~FL~el~~il~~---~~~~~f~-----~i~~~l 298 (409)
T PF01603_consen 230 HLSSYHQQLSYCVVQFLEKDPSLAEP---VIKGLLKHWPKTNSQKEVLFLNELEEILEV---LPPEEFQ-----KIMVPL 298 (409)
T ss_dssp GGGGTHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHS-SS-HHHHHHHHHHHHHHHTT-----HHHHH-----HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCchhHHH---HHHHHHHhCCCCCchhHHHHHHHHHHHHHh---cCHHHHH-----HHHHHH
Confidence 34467777777777777665444322 2223333320 0 123355555555543 2334444 678889
Q ss_pred HHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc-----CchhchHHHHHHHHHHHHh-hh---hhHHHHHHHHHHHHHh
Q 001675 726 WSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG-----QVDHWVEPYLRITVERLRR-AE---KSYLKCLLVQVIADAL 796 (1033)
Q Consensus 726 l~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~-----~~~~~l~~il~~~~~~l~~-~~---~~~~~~~~l~v~~~~~ 796 (1033)
+..+.+.+++... ++.+..+.-... -+...-..++..++..|.. ++ .+.++.....++..++
T Consensus 299 f~~la~ci~S~h~---------qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 299 FKRLAKCISSPHF---------QVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp HHHHHHHHTSSSH---------HHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCH---------HHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999976532 122222211111 1234455677777777654 22 5667776666667666
Q ss_pred hhChHHHHHHHH
Q 001675 797 YYNSSLTLSILH 808 (1033)
Q Consensus 797 ~~~~~~~l~~L~ 808 (1033)
-.||+.+-+...
T Consensus 370 ~~d~~lf~~~~~ 381 (409)
T PF01603_consen 370 EMDPKLFDKCAQ 381 (409)
T ss_dssp TTSHHHHHHHHH
T ss_pred HhCHHHHHHHHH
Confidence 778887766554
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=84.46 E-value=88 Score=36.40 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=47.4
Q ss_pred HhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 001675 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 528 (1033)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~ 528 (1033)
.||.+-+--.+.++|+.|..++++|+- ...++-..+.+-.++-.|++|.+--||..|+.+++.+=
T Consensus 490 rhIyNR~iLEN~ivRsaAv~aLskf~l-n~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 490 RHIYNRLILENNIVRSAAVQALSKFAL-NISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcc-CccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 334333333567899999999999974 22343334666777778899999999999999999764
No 117
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.91 E-value=4.5 Score=51.77 Aligned_cols=78 Identities=26% Similarity=0.259 Sum_probs=47.0
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
++..|.+|+.++|.+... . .+ ...+...+.++++.+|..|.+.++.+.. ...++.++.+
T Consensus 788 d~~VR~aA~~aLg~~g~~----~----~~----~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------~~a~~~L~~~ 846 (897)
T PRK13800 788 DPLVRAAALAALAELGCP----P----DD----VAAATAALRASAWQVRQGAARALAGAAA---------DVAVPALVEA 846 (897)
T ss_pred CHHHHHHHHHHHHhcCCc----c----hh----HHHHHHHhcCCChHHHHHHHHHHHhccc---------cchHHHHHHH
Confidence 566777777777655321 0 01 1113334556677777777777765432 2234666677
Q ss_pred CCCCCCchHHHHHHHHHHH
Q 001675 509 LRDPELPVRVDSVFALRSF 527 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa~al~~~ 527 (1033)
|.|++..||..|+.+|..+
T Consensus 847 L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hcCCCHHHHHHHHHHHhcc
Confidence 7777777888888777764
No 118
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=83.41 E-value=7.3 Score=44.73 Aligned_cols=106 Identities=11% Similarity=0.231 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhcCChhhhhhhhhh----HHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHH
Q 001675 317 RVTNLILQYLSNSISKNSMYNLLQPR----LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMD 392 (1033)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~----l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ 392 (1033)
.++.++++...+...++..+ +.|+ ++.++.-++-++|+.+++. ++.|..|.-|..
T Consensus 262 ~lL~~lm~m~rSLl~Np~i~--lepYlh~L~PSvlTCvVsk~l~~~p~~-------------------dnhwaLRDfAA~ 320 (576)
T KOG2549|consen 262 ELLIYLMRMVRSLLDNPNIF--LEPYLHQLVPSVLTCVVSKNLCLRPEL-------------------DNHWALRDFAAR 320 (576)
T ss_pred HHHHHHHHHHHHHhcCCccc--hhhHHHHHhhHHHHhhhhhhccCCccc-------------------cchHHHHHHHHH
Confidence 56677778877777777532 3444 4555555666888877632 235788999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHh
Q 001675 393 FVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 446 (1033)
Q Consensus 393 ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~ 446 (1033)
++..+|++++...- .+-.-+.+.+.+.-.++. ..|...+|++..+..+...
T Consensus 321 ll~~i~k~f~~~y~-~L~~Rit~tl~k~l~D~~--~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 321 LLAQICKNFSTLYN-NLQPRITRTLSKALLDNK--KPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred HHHHHHHhhhhHHH-HHHHHHHHHHHHHhcCCC--CCchhhhhHHHHHHHhhhh
Confidence 99999999876432 233334444433322332 3789999999998887763
No 119
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=83.40 E-value=59 Score=36.91 Aligned_cols=209 Identities=14% Similarity=0.160 Sum_probs=120.0
Q ss_pred hhHhhhhhCH---HHHHHHhcCcc--cccCCHHHHHHH-HHHHHHHh-cc--cchHHHHHHHHHHhhccccCCCCCCCch
Q 001675 360 NDQKLWDEDP---HEYVRKGYDII--EDLYSPRTASMD-FVSELVRK-RG--KENLQKFIQFIVGIFKRYDETPVEYKPY 430 (1033)
Q Consensus 360 ~d~e~we~Dp---~efi~~~~d~~--~d~~s~R~aa~~-ll~~L~~~-~~--~~~~~~l~~~i~~~l~~~~~~~~~~~~w 430 (1033)
++.+.|..|+ ..||++..... .+.-+-|..|.. +...+|.. ++ .+.+..++..+.++|... .+.
T Consensus 272 ~~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-------~~~ 344 (516)
T KOG2956|consen 272 DSMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-------EDE 344 (516)
T ss_pred cchhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-------hhh
Confidence 3444554433 34666543211 122344555544 66666653 22 345566677777787652 255
Q ss_pred hhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcc-cchHHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 001675 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 509 (1033)
Q Consensus 431 ~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~-~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 509 (1033)
..|.-||+.++-+...-... +.+.-|-- ...++-.-.+.++ .+|..+=.++.-.+.+. +......+-+.++.
T Consensus 345 ~~k~laLrvL~~ml~~Q~~~--l~DstE~a-i~K~Leaa~ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Ilt-- 417 (516)
T KOG2956|consen 345 IIKKLALRVLREMLTNQPAR--LFDSTEIA-ICKVLEAAKDSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLILT-- 417 (516)
T ss_pred HHHHHHHHHHHHHHHhchHh--hhchHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHhc--
Confidence 67888888887655432111 11111212 2223333344443 55554444343344432 22233333333333
Q ss_pred CCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhc-ccccccHHHHHHH
Q 001675 510 RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFG-EEMAPYALGLCQN 585 (1033)
Q Consensus 510 ~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~-~~i~p~~~~l~~~ 585 (1033)
.+.+.-+.+...+.+++... ..+.+.+.++.++..+++.-+..++. +.+.+|-+++.+.+ +++.||...|...
T Consensus 418 --~D~~~~~~~iKm~Tkl~e~l-~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 418 --ADEPRAVAVIKMLTKLFERL-SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred --CcchHHHHHHHHHHHHHhhc-CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 55566667777899999876 47888899999999988877665554 47788888888888 8999998887753
No 120
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=83.04 E-value=0.96 Score=48.01 Aligned_cols=123 Identities=14% Similarity=0.252 Sum_probs=73.1
Q ss_pred hhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHH-----HHHHH
Q 001675 430 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALHS 504 (1033)
Q Consensus 430 w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~-----~~~~~ 504 (1033)
.+..--+++++|.+..+-........+. .+ .+.+.+.|.++..-+|--|||.++...-- +.+..+ .++|-
T Consensus 299 a~iqtPalR~vGNIVTG~D~QTqviI~~-G~-L~a~~~lLs~~ke~irKEaCWTiSNITAG---nteqiqavid~nliPp 373 (526)
T COG5064 299 AKIQTPALRSVGNIVTGSDDQTQVIINC-GA-LKAFRSLLSSPKENIRKEACWTISNITAG---NTEQIQAVIDANLIPP 373 (526)
T ss_pred ccccCHHHHhhcCeeecCccceehheec-cc-HHHHHHHhcChhhhhhhhhheeecccccC---CHHHHHHHHhcccchH
Confidence 3456667888887765432111111011 11 12334456666668999999999887432 223333 34577
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcch--HHHHHHHHHHhhhhch
Q 001675 505 VVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL--PQLLDEFFKLMNEVEN 557 (1033)
Q Consensus 505 l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~ 557 (1033)
+++.|...+.-.+-.||.|+.+....+...+++..|+ +..+..|+.++.-.++
T Consensus 374 Li~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 374 LIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 8888888889999999999999887764333333332 2345555555554444
No 121
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=82.15 E-value=76 Score=33.95 Aligned_cols=220 Identities=13% Similarity=0.175 Sum_probs=118.7
Q ss_pred CchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 001675 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (1033)
Q Consensus 428 ~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~ 507 (1033)
+++..|.-|+.+++.+-..+....=-..++ .++..+...-+.+ ++-+... +..+.....+.--+.+....++..+.+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev-~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEV-QVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILRSLFQ 87 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHH-HHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHH
Confidence 377889999988888777765321001122 2333333333332 3333222 333333332221123456778888877
Q ss_pred cCCCC--CCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhh-chhh---HHHHHHHHHHhhcccccccHHH
Q 001675 508 GLRDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV-ENED---LVFTLETIVDKFGEEMAPYALG 581 (1033)
Q Consensus 508 ~L~d~--~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~-~~~~---l~~~l~~iv~~~~~~i~p~~~~ 581 (1033)
..+-+ ...+|...-.-+..++++. .+.+...-...+.+++++++.- +... +..++..++..+. +.+++.+
T Consensus 88 ~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~ 163 (262)
T PF14500_consen 88 NVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAED 163 (262)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHH
Confidence 66533 3448888888888888874 4666666778888888877532 2222 3455566666665 3555555
Q ss_pred HHHHHHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHH
Q 001675 582 LCQNLAAAFWRCM-NTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLE 660 (1033)
Q Consensus 582 l~~~L~~~~~~~~-~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ 660 (1033)
+...+.- +-.+- +.+.+|| ....+..+-..+...+. .+| .+.+.++|.+-.-|..+....-.++++
T Consensus 164 lFd~~~c-YFPI~F~pp~~dp-----~~IT~edLk~~L~~cl~---s~~----~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 164 LFDVFSC-YFPITFRPPPNDP-----YGITREDLKRALRNCLS---STP----LFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred HHHHhhh-eeeeeeeCCCCCC-----CCCCHHHHHHHHHHHhc---CcH----hhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 5544431 22221 2222233 11222222223332222 233 355788898888887776667777777
Q ss_pred HHHHhhh
Q 001675 661 IVSYMTF 667 (1033)
Q Consensus 661 ll~~l~~ 667 (1033)
.+...+.
T Consensus 231 tL~~c~~ 237 (262)
T PF14500_consen 231 TLKACIE 237 (262)
T ss_pred HHHHHHH
Confidence 7766653
No 122
>PF05536 Neurochondrin: Neurochondrin
Probab=81.91 E-value=1.2e+02 Score=36.38 Aligned_cols=153 Identities=11% Similarity=0.118 Sum_probs=88.3
Q ss_pred HHHHHHHHcccCch-hHHHHHHHHHHHhhhcCCCCCHhHHH--HHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccc
Q 001675 639 LLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFSPTISLEMWS--LWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLT 715 (1033)
Q Consensus 639 ~~p~i~~il~~~~~-~~~~~~l~ll~~l~~~~~~isp~l~~--l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~ 715 (1033)
-+|++-.++..... ...+++++++..+..+. .-...+.+ ..+.+.+.+.+ ..-..+..+.++.+.+.......+.
T Consensus 99 ~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~ 176 (543)
T PF05536_consen 99 RIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWA 176 (543)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhh
Confidence 46888888876666 89999999999998432 21222322 34445544432 1223445555665555544433332
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc---C---chhchHHHHHHHHHHHHhhhhhHHHHHHH
Q 001675 716 CKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG---Q---VDHWVEPYLRITVERLRRAEKSYLKCLLV 789 (1033)
Q Consensus 716 ~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~---~---~~~~l~~il~~~~~~l~~~~~~~~~~~~l 789 (1033)
..+..+..++.-+.+.+... ...++..+|.++..++...+. . -..|+..+...+-..|++.-++.-|...+
T Consensus 177 -~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al 253 (543)
T PF05536_consen 177 -EDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPAL 253 (543)
T ss_pred -hhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 23345566666666666533 333356678888888887741 1 12477777777777777654555555554
Q ss_pred HHHHHHh
Q 001675 790 QVIADAL 796 (1033)
Q Consensus 790 ~v~~~~~ 796 (1033)
.+.+.++
T Consensus 254 ~Laa~Ll 260 (543)
T PF05536_consen 254 NLAASLL 260 (543)
T ss_pred HHHHHHH
Confidence 4444443
No 123
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=81.21 E-value=1.1e+02 Score=35.29 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhc
Q 001675 387 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 466 (1033)
Q Consensus 387 R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~ 466 (1033)
|.....++..+-.++.. .-..+...+...+.+|.... ....-..-+|-.+|++..++.. +.+.....|+.+.++
T Consensus 150 R~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e~---~~~~gI~elLeil~sii~gf~~--plk~eh~~fl~~vll 223 (409)
T PF01603_consen 150 RDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYET---ERHNGIAELLEILGSIINGFAV--PLKEEHKQFLRKVLL 223 (409)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHTT---S--STHHHHHHHHHHHHTT--S--S--HHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHH
Confidence 33344455554444322 22333444444444432211 1334456667777777766532 345567789999999
Q ss_pred ccCCCCc-ccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHH
Q 001675 467 PEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (1033)
Q Consensus 467 p~l~~~~-~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il 545 (1033)
|....++ +.-...-..++.+|.+ +++.....++.+++.+=--.+..-.+.-..=+..++... .++.+.+...++.
T Consensus 224 PLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~-~~~~f~~i~~~lf 299 (409)
T PF01603_consen 224 PLHKSPHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL-PPEEFQKIMVPLF 299 (409)
T ss_dssp GGGGSTGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 9988664 3345566677777765 256677888888888865555555556666666666655 3667777777888
Q ss_pred HHHHHHhhhhc
Q 001675 546 DEFFKLMNEVE 556 (1033)
Q Consensus 546 ~~L~~ll~~~~ 556 (1033)
..+...++...
T Consensus 300 ~~la~ci~S~h 310 (409)
T PF01603_consen 300 KRLAKCISSPH 310 (409)
T ss_dssp HHHHHHHTSSS
T ss_pred HHHHHHhCCCC
Confidence 87777776533
No 124
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.96 E-value=17 Score=39.39 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=49.5
Q ss_pred cccCCCCcccchHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 466 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 466 ~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~----~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
+..+.+.++-+|.+||-.+|.++--. +.- +.-..+++.++..+.+++..|+..|..||+.+..+.
T Consensus 214 Vsll~s~d~dvqyycttaisnIaVd~-~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 214 VSLLKSGDLDVQYYCTTAISNIAVDR-RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred hhhhccCChhHHHHHHHHhhhhhhhH-HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 34456778889999999999886311 111 222458899999999999999999999999998764
No 125
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.72 E-value=23 Score=38.49 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=56.6
Q ss_pred CchhhHhHHH-HHHHHHHH-hhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccc-------cCChhHH
Q 001675 428 KPYRQKDGAL-LAIGALCD-KLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-------FSDQNNF 498 (1033)
Q Consensus 428 ~~w~~keaal-~~lg~la~-~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-------~~~~~~~ 498 (1033)
+.||...+.. ..+..+.. .+ +...+..++ +++...++..+-+..+-.|.++|.++..+.... ++.....
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~-~~~~i~~~~-~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~ 164 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQL-DRPWISQHW-PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLF 164 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcC-CcchHHHhh-hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChH
Confidence 3788877544 34443333 22 222121122 334444444444667889999999999986532 1222234
Q ss_pred HHHHHHHHhcCC--------CCCCchHHHHHHHHHHHHHh
Q 001675 499 RKALHSVVSGLR--------DPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 499 ~~~~~~l~~~L~--------d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
..+..++.+++. +.++.+-..|--|+..++..
T Consensus 165 ~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 165 SVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 555566666665 34555666777777777654
No 126
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=80.71 E-value=23 Score=37.68 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=80.6
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
+...++.++.++|..+..-... ++..++.. ...|...+.+++|-+|-+|++++..++.. ..+....+.+++.++..
T Consensus 26 dp~i~e~al~al~n~aaf~~nq-~~Ir~~Gg--i~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 26 DPFIQEKALIALGNSAAFPFNQ-DIIRDLGG--ISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIKMYIPQVCEE 101 (254)
T ss_pred ChHHHHHHHHHHHhhccChhHH-HHHHHcCC--HHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHH
Confidence 6788999999999876642211 11111111 12344556778999999999999988753 23445566667777765
Q ss_pred CC-C-CCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHH
Q 001675 509 LR-D-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIV 568 (1033)
Q Consensus 509 L~-d-~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv 568 (1033)
+. + -+..|+..+.++|.++.-....+..+.+++ ..++.++..-+...=..++..++
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i----~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYI----PDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhH----HHHHHHHHcCChHHHHHHHHHHH
Confidence 43 2 367899999999988854332344455554 44556665533334445665554
No 127
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=80.12 E-value=1.6e+02 Score=36.34 Aligned_cols=214 Identities=13% Similarity=0.137 Sum_probs=98.2
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHH-HHHHhhcccCCCCcccchHHHHHHHHhhhccc-cCChhHHHHHHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELER-MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVV 506 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~-~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-~~~~~~~~~~~~~l~ 506 (1033)
+-...+.++.++..+|..-. .+..|.. =+.+.+.+.+.+++ .+.-|+.++...+.-. .+..=....+++.++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~----~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPE----LRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHH----HHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 44678888888888875421 1111110 00122333444332 3344555555544311 111101234566666
Q ss_pred hcCC-CCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHH
Q 001675 507 SGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQN 585 (1033)
Q Consensus 507 ~~L~-d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~ 585 (1033)
..|. .++..|...+...+.++..+....+.+.. ...++.|+...-.....-++.++..+...-+ .......+.+..
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~--g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~-~~k~~f~~~i~~ 494 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCE--GNGLQSLMKRALKTRDPLLLKLIRNISQHDG-PLKELFVDFIGD 494 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh--cCcHHHHHHHHHhcccHHHHHHHHHHHhcCc-hHHHHHHHHHHH
Confidence 6653 35666777666666666665432233322 1223333333222333334555555543321 111111122222
Q ss_pred HHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHH-hhHHHHHHHHcccCch--hHHHHHHHHH
Q 001675 586 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIE-PTLLPIMRRMLTTDGQ--EVFEEVLEIV 662 (1033)
Q Consensus 586 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~-~~~~p~i~~il~~~~~--~~~~~~l~ll 662 (1033)
|+ ++..+.+ ++ ...++|++++-...-.+.....-+. ..++|.+...|.+... ++.-++..++
T Consensus 495 L~----~~v~~~~-~e----------e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~ 559 (708)
T PF05804_consen 495 LA----KIVSSGD-SE----------EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILL 559 (708)
T ss_pred HH----HHhhcCC-cH----------HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 22 2333221 11 1456777777655322222222232 4789999999976533 6666677666
Q ss_pred HHhh
Q 001675 663 SYMT 666 (1033)
Q Consensus 663 ~~l~ 666 (1033)
+++.
T Consensus 560 gtla 563 (708)
T PF05804_consen 560 GTLA 563 (708)
T ss_pred HHHH
Confidence 6665
No 128
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.62 E-value=88 Score=34.51 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=86.7
Q ss_pred CCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001675 34 TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLK 113 (1033)
Q Consensus 34 ~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~ 113 (1033)
.+++...++.++...+.+..+.+...+.+=..+...=...+-. ...+..+....=..++..+..++..|+.+.+.+++
T Consensus 53 ~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~--~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 53 GDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELF--LELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp ---------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHH--HHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHH--HHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3467777777776653477888888888888776543210000 00111111113355666677789999999999999
Q ss_pred HHHHhhCCCCch---hHHHHHHHHhchh-------hHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHHHHH
Q 001675 114 TIIHADYPEQWP---HLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRL 183 (1033)
Q Consensus 114 ~Ia~~d~P~~Wp---~Ll~~l~~~l~s~-------~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~ 183 (1033)
.++...-+..=. +.++.+++.+++. .+..++.+|..+.+.= +-|..+-. ...++.+.+++...
T Consensus 131 ~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-----~~R~~f~~--~~~v~~l~~iL~~~ 203 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-----EYRQVFWK--SNGVSPLFDILRKQ 203 (312)
T ss_dssp HHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-----HHHHHHHT--HHHHHHHHHHHH--
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-----hhHHHHHh--cCcHHHHHHHHHhh
Confidence 999887554444 6788888887753 2478899999988542 22222211 34455555555321
Q ss_pred hhccCCChhHHHHHHHHHHHhHHhhh
Q 001675 184 VQIVNPSLEVADLIKLICKIFWSSIY 209 (1033)
Q Consensus 184 ~~~~~~~~~~~~~~~~~lki~~~l~~ 209 (1033)
... .+....++++.++-|+|-++.
T Consensus 204 ~~~--~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 204 ATN--SNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHTT
T ss_pred ccc--CCCCchhHHHHHHHHHHHHhc
Confidence 111 112346788888889887754
No 129
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=79.45 E-value=1e+02 Score=33.85 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHH---HHHHHHHHhhccc
Q 001675 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEE 574 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~---~~l~~iv~~~~~~ 574 (1033)
+..-+...+..+.+...-.|..|-.++..++......+.+......++..+.+.++.-..++.. .++.-++-.++.
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~- 119 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA- 119 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC-
Confidence 3444556666666666778999999999999776567778888899999999999765444432 334434433331
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHH-Hcc-----
Q 001675 575 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRR-MLT----- 648 (1033)
Q Consensus 575 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~-il~----- 648 (1033)
..-..++...+.+.+.+++..... ....+..++.+++-+.-..+..++.+..+.+.+=-++.. +..
T Consensus 120 -g~~~~ei~~~~~~~L~~~l~d~s~-------~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~ 191 (309)
T PF05004_consen 120 -GEDSEEIFEELKPVLKRILTDSSA-------SPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNA 191 (309)
T ss_pred -CccHHHHHHHHHHHHHHHHhCCcc-------chHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 122446666666666666653321 222345667776655433344444333111111111111 111
Q ss_pred -----cCchhHHHHHHHHHHHhhhc
Q 001675 649 -----TDGQEVFEEVLEIVSYMTFF 668 (1033)
Q Consensus 649 -----~~~~~~~~~~l~ll~~l~~~ 668 (1033)
++...+...+++-|+.++-.
T Consensus 192 ~~~~~~~~~~l~~aAL~aW~lLlt~ 216 (309)
T PF05004_consen 192 PVVAAEDDAALVAAALSAWALLLTT 216 (309)
T ss_pred ccccCCCccHHHHHHHHHHHHHHhc
Confidence 12235888899999888743
No 130
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=79.07 E-value=1.9e+02 Score=36.56 Aligned_cols=36 Identities=8% Similarity=0.394 Sum_probs=26.8
Q ss_pred HhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHH
Q 001675 30 QFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFI 66 (1033)
Q Consensus 30 ~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I 66 (1033)
.++++.+|..-|= .+...+.|.-+|=+....|+.+|
T Consensus 31 slKknTaF~KklK-~~t~~~~dsli~els~lnLsKyi 66 (1128)
T KOG2051|consen 31 SLKKNTAFMKKLK-LLTAEQYDSLIKELSTLNLSKYI 66 (1128)
T ss_pred HhhhhhHHHHHHH-HHhhhhhHHHHHHHHhccHHHHH
Confidence 4556777777766 56666778888888888888887
No 131
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.21 E-value=2.1e+02 Score=36.65 Aligned_cols=160 Identities=15% Similarity=0.157 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCc---chhHHHHHH
Q 001675 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP---YKSELERML 461 (1033)
Q Consensus 385 s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~---~~~~l~~~l 461 (1033)
+.......+|..++...|+-+++-+-.++ ..+. .++...|.+.+-++|.+......... ....+..-+
T Consensus 290 ~g~k~v~~fL~elS~~~P~l~~~~l~~lv-~lld--------~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~ 360 (1251)
T KOG0414|consen 290 AGPKIVGNFLVELSERVPKLMLRQLTLLV-DLLD--------SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDEL 360 (1251)
T ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHHHH-HhcC--------CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 34445567888888877665443332222 2332 24788999999888866544322111 111222212
Q ss_pred HHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchh-hcc
Q 001675 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI-RPI 540 (1033)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l-~p~ 540 (1033)
..++..-+.+-++++|.+++.+..+.....-.+......++..++..+.|.+..||..|+.-+..++...+..... ..-
T Consensus 361 le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~ 440 (1251)
T KOG0414|consen 361 LELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDD 440 (1251)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 2333334456789999999999998776543344678999999999999999999999999999999875311111 112
Q ss_pred hHHHHHHHHHHhh
Q 001675 541 LPQLLDEFFKLMN 553 (1033)
Q Consensus 541 l~~il~~L~~ll~ 553 (1033)
+...++...+.++
T Consensus 441 ~~~~~E~~~~~~e 453 (1251)
T KOG0414|consen 441 LRAKLEKELQKLE 453 (1251)
T ss_pred hhhhHHHHHHhhh
Confidence 2333555555554
No 132
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=78.11 E-value=3.9 Score=37.01 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=57.9
Q ss_pred ccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHH
Q 001675 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 551 (1033)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d--~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~l 551 (1033)
..-|.|++..++.+-+. .......+.+.++.+|+. ....+|..|+.+-..|+... ..+.+.|++++++..+++.
T Consensus 29 ~~ek~~~l~si~~lI~~---~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L-~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 29 IPEKKRALRSIEELIKL---GGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTL-DEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHh
Confidence 35788999999888762 234567777777777764 23368999999999999887 4789999999998888776
Q ss_pred hh
Q 001675 552 MN 553 (1033)
Q Consensus 552 l~ 553 (1033)
.+
T Consensus 105 ~~ 106 (107)
T PF08064_consen 105 WD 106 (107)
T ss_pred cc
Confidence 53
No 133
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.09 E-value=28 Score=43.91 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=91.5
Q ss_pred HHHHHHHHHHh---cc-cchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHH---HhhhcCCcchhHHHHHHH
Q 001675 390 SMDFVSELVRK---RG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC---DKLKQTEPYKSELERMLV 462 (1033)
Q Consensus 390 a~~ll~~L~~~---~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la---~~l~~~~~~~~~l~~~l~ 462 (1033)
=.+++..+|++ +| +.++..+.+++....... +-..+.-.+-||..++|-+. ..+.+ .++.-++
T Consensus 897 ~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~----~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llf- 966 (1251)
T KOG0414|consen 897 LADLISGICEKELLYGEKSLLGRFAPIVVEGCRNP----GLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLF- 966 (1251)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCC----CcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHH-
Confidence 35677777775 56 778888888888887642 22235678888888888443 33322 2343333
Q ss_pred HhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchH
Q 001675 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (1033)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~ 542 (1033)
+.+- ++|.|.+|+.+...+|-++- .|. +.+...-+.+...|+|+++-||..|...+..++-+.. -.++.+++
T Consensus 967 time---ksp~p~IRsN~VvalgDlav-~fp--nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm--iKVKGql~ 1038 (1251)
T KOG0414|consen 967 TIME---KSPSPRIRSNLVVALGDLAV-RFP--NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM--IKVKGQLS 1038 (1251)
T ss_pred HHHh---cCCCceeeecchheccchhh-hcc--cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh--hHhcccHH
Confidence 3221 37899999999888887763 233 3455666677788999999999999999999987642 33444444
Q ss_pred H
Q 001675 543 Q 543 (1033)
Q Consensus 543 ~ 543 (1033)
.
T Consensus 1039 e 1039 (1251)
T KOG0414|consen 1039 E 1039 (1251)
T ss_pred H
Confidence 3
No 134
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.17 E-value=1.8e+02 Score=35.40 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHH
Q 001675 383 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (1033)
Q Consensus 383 ~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~ 462 (1033)
.+.-+++..+.+..+.+..+.. -+..+..+.+.+. +....+-+.+.++.++........ ......+
T Consensus 405 g~e~K~aivd~Ii~iie~~pds-Ke~~L~~LCefIE----------Dce~~~i~~rILhlLG~EgP~a~~-Pskyir~-- 470 (865)
T KOG1078|consen 405 GFEFKRAIVDAIIDIIEENPDS-KERGLEHLCEFIE----------DCEFTQIAVRILHLLGKEGPKAPN-PSKYIRF-- 470 (865)
T ss_pred CchHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHH----------hccchHHHHHHHHHHhccCCCCCC-cchhhHH--
Confidence 3556677777777777654321 1112222222322 122344455555555544433211 1122222
Q ss_pred HhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001675 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
+.+..--.+.++|+.|.-++.+|+- .++.....+...+..|+.|++.-||..|..++..+-+.
T Consensus 471 --iyNRviLEn~ivRaaAv~alaKfg~---~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 471 --IYNRVILENAIVRAAAVSALAKFGA---QDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred --HhhhhhhhhhhhHHHHHHHHHHHhc---CCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 3322223567899999999999872 24444567777888888999888999999999887743
No 135
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=76.94 E-value=13 Score=45.21 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=83.3
Q ss_pred HHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCC--CCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCccc
Q 001675 635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAH 712 (1033)
Q Consensus 635 l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~--~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~ 712 (1033)
+...++|.+..-+......--..-+..++.++.+.| .+-|.+..++|.+++++.-.+.+.--....++.-++...+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t- 942 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET- 942 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc-
Confidence 445566777665542222222333455566665543 46788889999999987433333323344555555444433
Q ss_pred ccccCCcchHHHHHHHHHHHhcCCCC-CCCccCchhHHHHHHHHHccc-CchhchHHHHHHHHHHHHhh
Q 001675 713 FLTCKEPDYQQSLWSMVSSIMADKNL-EDGDIEPAPKLIEVVFQNCKG-QVDHWVEPYLRITVERLRRA 779 (1033)
Q Consensus 713 ~l~~~~~~~~~~il~i~~~~l~~~~~-~~~~~~~a~~ll~~il~~~~~-~~~~~l~~il~~~~~~l~~~ 779 (1033)
+.. .++..++..+..+=.+..+ ...-+..|.++++++.+..|. .+.+|-+.+++++...|.++
T Consensus 943 L~t----~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 943 LQT----EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred cch----HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 221 4555555544433222222 133356789999999997665 57899999999999888754
No 136
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.83 E-value=84 Score=34.54 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=68.2
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHH--HHHHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVV 506 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~ 506 (1033)
+...|++|+--+-.+.+.+...+++. .+.. +.. ++..++++++-||..|.|++|..+.-..+.++.+ ...++.++
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~-~~gg-l~~-ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLI-SLGG-LVP-LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHh-hccC-HHH-HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 67889999999988888876544332 1211 222 3336678889999999999999875322122111 11455666
Q ss_pred hcCC-CCCCchHHHHHHHHHHHHHhcc
Q 001675 507 SGLR-DPELPVRVDSVFALRSFVEACR 532 (1033)
Q Consensus 507 ~~L~-d~~~~Vr~~Aa~al~~~~~~~~ 532 (1033)
..+. +.+.-||..|-.|+..++++.+
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 6665 4566799999999999999853
No 137
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=76.36 E-value=25 Score=34.41 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCC-----CCcccchHHHH
Q 001675 407 QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-----SPVGHLRAKAA 481 (1033)
Q Consensus 407 ~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~-----~~~~~lr~ra~ 481 (1033)
+.+++.+.+++.+- .+|..|..++.++|.++.-= ++ -.+.+..... ....-......
T Consensus 9 P~LL~~L~~iLk~e-------~s~~iR~E~lr~lGilGALD----P~-------~~k~~~~~~~~~~~~~~~~~~~~~~l 70 (160)
T PF11865_consen 9 PELLDILLNILKTE-------QSQSIRREALRVLGILGALD----PY-------KHKSIQKSLDSKSSENSNDESTDISL 70 (160)
T ss_pred HHHHHHHHHHHHhC-------CCHHHHHHHHHHhhhccccC----cH-------HHhcccccCCccccccccccchhhHH
Confidence 44566666676542 36999999999999887521 11 1111211111 11111111111
Q ss_pred HHHHhhhccccCChh-HHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhch
Q 001675 482 WVAGQYAHINFSDQN-NFRKALHSVVSGLRDPELP-VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 557 (1033)
Q Consensus 482 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~d~~~~-Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 557 (1033)
. ... .....++ +..-++..++..|+|+.+. -+..+..|+-.++... ...-.||++.++..++..+++.+.
T Consensus 71 ~-~~~---~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l--~~~cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 71 P-MMG---ISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL--GLKCVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred h-hcc---CCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc--CcCchhHHHHHhHHHHHHHHhCCH
Confidence 1 111 1111223 3556678888888988666 4557888888888654 233489999999999999986554
No 138
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=76.20 E-value=10 Score=33.14 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=54.4
Q ss_pred hcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
++..++++.+=+|+.++..+++.....-........++..++..|.|++.=|...|..++..+++..
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 4445677777799999999999866431123557899999999999999999999999999999875
No 139
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=75.70 E-value=20 Score=40.14 Aligned_cols=123 Identities=11% Similarity=0.182 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHh----hhcccCChhhHhhhhhC
Q 001675 293 YAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIV----FPLMCFNDNDQKLWDED 368 (1033)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i----~p~l~l~~~d~e~we~D 368 (1033)
.+|-|++.+-+.+.....+ .-..+.+.++.....+.++.. .+.+++-.|+..++ -+.++-++.
T Consensus 211 LlPyf~~fI~~~v~~n~~~---nl~~L~~lm~~v~ALl~N~~l--~le~Ylh~Lip~vltclv~~~l~~~~~-------- 277 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQ---NLALLIYLMRMVRALLDNPNL--HLEPYLHQLIPSVLTCLVAKQLCSRPP-------- 277 (343)
T ss_pred hhhHHHHHHHHHHHhhhcc---cHHHHHHHHHHHHHHhcCCCC--chHHhHHHHHHHHHHHhhhHhhcCCCC--------
Confidence 4555555554444331111 235567778888888877754 24555555444333 233332221
Q ss_pred HHHHHHHhcCcccccCCHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHH
Q 001675 369 PHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 445 (1033)
Q Consensus 369 p~efi~~~~d~~~d~~s~R~aa~~ll~~L~~~~~~~---~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~ 445 (1033)
.++.|..|.-|++++..+|++++.. +-+.+...+...+. +|.. ....++||+..++.++.
T Consensus 278 -----------~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~----d~~~--~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 278 -----------DDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL----DPKK--PLTTHYGAIVGLSALGP 340 (343)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc----CCCC--CcchhhHHHHHHHHhCc
Confidence 1246889999999999999998753 33344443333333 2321 34559999999988764
No 140
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=75.30 E-value=27 Score=35.47 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHH-----
Q 001675 558 EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLF----- 632 (1033)
Q Consensus 558 ~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~----- 632 (1033)
+.+..++.++.++++..-.|+...++..|.+ +.+..+ ......+=+++++.+++++ |+.+
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~-----lr~~~~--------f~~~~~~e~~lgaAi~amG--pe~vL~~lP 82 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGD-----LRESED--------FSFRKELEQVLGAAIRAMG--PEQVLSILP 82 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHH-----HHcCCC--------cchHHHHHHHHHHHHHHCC--HHHHHHHCC
Confidence 4577788888888887767777677666664 322211 1122345567777777775 2111
Q ss_pred ---------HHHHhhHHHHHHHHcccCc-hhHHHHHHHHHHHhh
Q 001675 633 ---------VQIEPTLLPIMRRMLTTDG-QEVFEEVLEIVSYMT 666 (1033)
Q Consensus 633 ---------~~l~~~~~p~i~~il~~~~-~~~~~~~l~ll~~l~ 666 (1033)
..=..-++|++.....+.. ..|.++.+-+...+-
T Consensus 83 Lnl~~~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~ 126 (198)
T PF08161_consen 83 LNLDNADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLR 126 (198)
T ss_pred CCccCCCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 1111346888887665543 356666666655543
No 141
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.05 E-value=1.1e+02 Score=33.63 Aligned_cols=126 Identities=11% Similarity=0.156 Sum_probs=65.3
Q ss_pred ccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHH
Q 001675 402 GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAA 481 (1033)
Q Consensus 402 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~ 481 (1033)
..+++..++..+.+++..- |. +...+ -..+..-.. ..+.+|+. .+..+..+++..|+
T Consensus 70 ~~d~v~yvL~li~dll~~~---~~-------~~~~~---~~~~~~~~~-----~~~~~fl~-----ll~~~D~~i~~~a~ 126 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDD---PS-------RVELF---LELAKQDDS-----DPYSPFLK-----LLDRNDSFIQLKAA 126 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-S---SS-------SHHHH---HHHHH-TTH-------HHHHHH-----H-S-SSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC---HH-------HHHHH---HHhcccccc-----hhHHHHHH-----HhcCCCHHHHHHHH
Confidence 4577888888888888652 11 11111 111211111 12444443 34567889999999
Q ss_pred HHHHhhhccccC-ChhHHHHHHHHHHhcC----CCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHh
Q 001675 482 WVAGQYAHINFS-DQNNFRKALHSVVSGL----RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (1033)
Q Consensus 482 ~~l~~~~~~~~~-~~~~~~~~~~~l~~~L----~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (1033)
.+++.+....-. .......+++.+++.+ ++++..++..|+.++..++.....+..+.. ...++.+..++
T Consensus 127 ~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL 200 (312)
T PF03224_consen 127 FILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHH
Confidence 999998654311 1111124445554444 444556778999999999977653333322 45555555555
No 142
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=74.25 E-value=3.1 Score=43.72 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.6
Q ss_pred chh-hHHHH
Q 001675 925 DEA-DSIRL 932 (1033)
Q Consensus 925 ~~~-~~~~~ 932 (1033)
++| ...||
T Consensus 206 ~DYna~~YF 214 (233)
T PF11705_consen 206 DDYNAENYF 214 (233)
T ss_pred CCcchhccC
Confidence 455 44443
No 143
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=74.10 E-value=3.8 Score=29.48 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 001675 500 KALHSVVSGLRDPELPVRVDSVFALRSFV 528 (1033)
Q Consensus 500 ~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~ 528 (1033)
..++.++++|.+++..|+..|+.||.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35788899999999999999999999876
No 144
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=73.63 E-value=1.5e+02 Score=32.77 Aligned_cols=137 Identities=19% Similarity=0.188 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCccc-C
Q 001675 139 QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQL-L 217 (1033)
Q Consensus 139 ~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~-~ 217 (1033)
+-...|.++..+++++..... ..+..++..+|-..+.+... +- .+.++.+.-..+.++.++....+..+ .
T Consensus 88 r~~evL~l~~~ii~kl~~~~~---~~v~~I~~~vf~~Tl~MI~~----d~--~~yPe~r~~ff~LL~~i~~~~f~~l~~l 158 (319)
T PF08767_consen 88 REPEVLSLMATIINKLGELIQ---PQVPQILEAVFECTLPMINK----DF--EEYPEHRVNFFKLLRAINEHCFPALLQL 158 (319)
T ss_dssp S-HHHHHHHHHHHHHHGGGCC---CCHHHHHHHHHHHHHHHHSS----TS--SSSHHHHHHHHHHHHHHHHHHTHHHHHS
T ss_pred cChhHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh----hh--hhChHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 456789999999998853222 23556666666665555432 11 11234444444444433322111111 1
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHH
Q 001675 218 DPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKI 297 (1033)
Q Consensus 218 ~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~ 297 (1033)
..+.+...+..+...+.... ..+-..+++++..+++.... ...+++..|.+.|.-.+
T Consensus 159 p~~~f~~~idsi~wg~kh~~-----------------~~I~~~~L~~l~~ll~~~~~------~~~~~~~~F~~~y~~~i 215 (319)
T PF08767_consen 159 PPEQFKLVIDSIVWGFKHTN-----------------REISETGLNILLELLNNVSK------TNPEFANQFYQQYYLDI 215 (319)
T ss_dssp -HHHHHHHHHHHHHHHTSSS-----------------HHHHHHHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCc-----------------HHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHH
Confidence 13556666666665555431 12334567777777776532 11345555666666667
Q ss_pred HHHHHHHHHh
Q 001675 298 LECHLNLLNR 307 (1033)
Q Consensus 298 ~~~~~~~l~~ 307 (1033)
++.++..+.-
T Consensus 216 l~~if~vltD 225 (319)
T PF08767_consen 216 LQDIFSVLTD 225 (319)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHC
Confidence 7777766543
No 145
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.65 E-value=23 Score=37.93 Aligned_cols=135 Identities=12% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHH
Q 001675 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (1033)
Q Consensus 384 ~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~ 463 (1033)
|-...-+.+++..|+...+..+...+-..|..+..+.. |+ .-..--+|+.+++.+...+... +...++..+.
T Consensus 102 W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslK-Nl----RS~VsraA~~t~~difs~ln~~--i~~~ld~lv~- 173 (334)
T KOG2933|consen 102 WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLK-NL----RSAVSRAACMTLADIFSSLNNS--IDQELDDLVT- 173 (334)
T ss_pred HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc-Ch----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-
Confidence 44556677788888877665444444455555554431 22 2234556666776666655432 1122333322
Q ss_pred hhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
.++---...+.|+|..|-..+-...... . -..+++.+..++......+|..|+.++.+++...
T Consensus 174 ~Ll~ka~~dnrFvreda~kAL~aMV~~v--t---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 174 QLLHKASQDNRFVREDAEKALVAMVNHV--T---PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHhcc--C---hHHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 2221112357899999999987765532 3 3667888888888888889999998887766543
No 146
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=72.59 E-value=23 Score=44.83 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhcccchH---HHHHHHHHHhhccccCCC-CCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHH
Q 001675 387 RTASMDFVSELVRKRGKENL---QKFIQFIVGIFKRYDETP-VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (1033)
Q Consensus 387 R~aa~~ll~~L~~~~~~~~~---~~l~~~i~~~l~~~~~~~-~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~ 462 (1033)
|..|.-+|..+++.+|.... +.+.+++...++.+.... ........-.+++-.+|.-.+ . +-+. .
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~---------~-~~~~-l 818 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLH---------P-LGSL-L 818 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhh---------h-hhhh-h
Confidence 77788899999999987544 334555555565542211 000011111111111111111 0 1111 1
Q ss_pred HhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchH
Q 001675 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (1033)
Q Consensus 463 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~ 542 (1033)
..++....+.++.+|..|..+++-+.... ..+....++..++..+.+.+..+|-.++..+-..+... ....+.||.+
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~-l~~~l~~~~~ 895 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSA--TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV-LMVGLVPYNP 895 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh-hcccccccce
Confidence 23333445788999999999999886643 34678899999999999887777766666555544433 3567788998
Q ss_pred HHHHHHHHHhhhhch---hhHHHHHHHHHHhh
Q 001675 543 QLLDEFFKLMNEVEN---EDLVFTLETIVDKF 571 (1033)
Q Consensus 543 ~il~~L~~ll~~~~~---~~l~~~l~~iv~~~ 571 (1033)
-++.-|+..|..... +....+...++-..
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIPLL 927 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhccc
Confidence 888888888865332 23445555555444
No 147
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=72.22 E-value=23 Score=40.03 Aligned_cols=155 Identities=12% Similarity=0.133 Sum_probs=92.1
Q ss_pred cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHH
Q 001675 383 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (1033)
Q Consensus 383 ~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~ 462 (1033)
..+.|.-|..+|..+++.-+...+....-.+...|.... ++ .+-..+.|+=.++..++...... .+
T Consensus 343 ~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~-ds---~~~v~~~Aeed~~~~las~~P~~-----~I----- 408 (516)
T KOG2956|consen 343 DEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK-DS---QDEVMRVAEEDCLTTLASHLPLQ-----CI----- 408 (516)
T ss_pred hhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh-CC---chhHHHHHHHHHHHHHHhhCchh-----HH-----
Confidence 357899999999999987765544444444445554321 11 23334444444444444443221 11
Q ss_pred HhhcccC-CCCcccchHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhc
Q 001675 463 QHVFPEF-SSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (1033)
Q Consensus 463 ~~v~p~l-~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p 539 (1033)
..+.|.+ +..+|.. ..++.++.+..+-.-..+ ..+..+.|.+++.-++++--||-.|+.||-.+.... ..+.+.|
T Consensus 409 ~~i~~~Ilt~D~~~~-~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v-G~~~meP 486 (516)
T KOG2956|consen 409 VNISPLILTADEPRA-VAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV-GMEEMEP 486 (516)
T ss_pred HHHhhHHhcCcchHH-HHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH-hHHhhhh
Confidence 1122222 2344432 224447777654331111 457788888888888988899999999999998765 2478999
Q ss_pred chHHHHHHHHHHhh
Q 001675 540 ILPQLLDEFFKLMN 553 (1033)
Q Consensus 540 ~l~~il~~L~~ll~ 553 (1033)
|+.++-..-++|++
T Consensus 487 hL~~Lt~sk~~Llq 500 (516)
T KOG2956|consen 487 HLEQLTSSKLNLLQ 500 (516)
T ss_pred HhhhccHHHHHHHH
Confidence 99887665555543
No 148
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.60 E-value=52 Score=39.71 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=68.0
Q ss_pred HHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhc
Q 001675 460 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (1033)
Q Consensus 460 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p 539 (1033)
...+.++-+..+++|.+|+-|+...|... -......+..-+..+++|.++.||..|+.+...+..... +...+
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~-----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~--~~~~~ 158 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLR-----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP--DLVED 158 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEe-----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh--hhccc
Confidence 34455666778899999999998885543 224567777888899999999999999999999987642 22221
Q ss_pred chHHHHHHHHHHhhhhchhhHHHHHHHHHH
Q 001675 540 ILPQLLDEFFKLMNEVENEDLVFTLETIVD 569 (1033)
Q Consensus 540 ~l~~il~~L~~ll~~~~~~~l~~~l~~iv~ 569 (1033)
..++..|-.++...+...+..++.++.+
T Consensus 159 --~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 159 --SGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred --cchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 3444455555553333445555555543
No 149
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.90 E-value=3.5e+02 Score=35.78 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhChHH
Q 001675 723 QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSL 802 (1033)
Q Consensus 723 ~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~~~ 802 (1033)
+.+.-++.+++... .+....|..|...++..+..++.+.+..++...+..-. +.....+..+..++..+-.+.|+.
T Consensus 181 e~L~~ll~~lv~~~---~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~-s~~~~~~~~~he~i~~L~~~~p~l 256 (1266)
T KOG1525|consen 181 ELLDVLLENLVKPG---RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYK-SRQSSLKIKYHELILELWRIAPQL 256 (1266)
T ss_pred HHHHHHHHHhccCC---CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhcc-ccccchhhHHHHHHHHHHHhhHHH
Confidence 34444456666432 23345689999999999988887777777666644322 244556677788888888889998
Q ss_pred HHHHHH
Q 001675 803 TLSILH 808 (1033)
Q Consensus 803 ~l~~L~ 808 (1033)
++.++.
T Consensus 257 l~~vip 262 (1266)
T KOG1525|consen 257 LLAVIP 262 (1266)
T ss_pred HHHHHH
Confidence 887775
No 150
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=69.78 E-value=12 Score=25.00 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 001675 91 DHILVFVAQVPPLLRVQLGECLKTIIHA 118 (1033)
Q Consensus 91 ~~Ll~~l~~~~~~ir~~la~~i~~Ia~~ 118 (1033)
..+++++.+++..+|...+.+++.|+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4567788889999999999999998864
No 151
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=69.20 E-value=79 Score=37.45 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 472 PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 472 ~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
...-+|..|+.-+..++.. +++++..+...++++|+..+.......-.||..++...
T Consensus 71 ed~~iR~~aik~lp~~ck~---~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d 127 (556)
T PF05918_consen 71 EDVQIRKQAIKGLPQLCKD---NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD 127 (556)
T ss_dssp SSHHHHHHHHHHGGGG--T-----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-
T ss_pred ccHHHHHHHHHhHHHHHHh---HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 3445788888888777652 45788999999999999877777778888898888765
No 152
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=68.98 E-value=1.3e+02 Score=30.11 Aligned_cols=122 Identities=16% Similarity=0.296 Sum_probs=64.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 001675 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (1033)
+.|++..||..|+.++..+++.. ++|+.. ..+.+ .-...++|+...+...+.+
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gs------k~~L~~--------Ae~~~-------------~~~~sFtslS~tLa~~i~~ 101 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGS------KPFLAQ--------AEESK-------------GPSGSFTSLSSTLASMIME 101 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHcc------HHHHHH--------HHhcC-------------CCCCCcccHHHHHHHHHHH
Confidence 47999999999999999999874 233322 11111 0112345555444443332
Q ss_pred ---HHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhcc---CChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHH
Q 001675 589 ---AFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS---RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIV 662 (1033)
Q Consensus 589 ---~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~---~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll 662 (1033)
.+...++... +.-....++.|++.++.+.. -.++....+...+.|.+. +.+.+....++..+
T Consensus 102 lH~~Ll~~L~~E~--------~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~----~~d~~v~v~~l~~~ 169 (182)
T PF13251_consen 102 LHRGLLLALQAEK--------SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLR----HRDPNVRVAALSCL 169 (182)
T ss_pred HHHHHHHHHhccc--------ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHh----cCCCcHHHHHHHHH
Confidence 3333333211 12234478888888887752 133444333333333333 34445556666666
Q ss_pred HHhhhcC
Q 001675 663 SYMTFFS 669 (1033)
Q Consensus 663 ~~l~~~~ 669 (1033)
..++...
T Consensus 170 ~~l~s~~ 176 (182)
T PF13251_consen 170 GALLSVQ 176 (182)
T ss_pred HHHHcCC
Confidence 6666443
No 153
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=68.93 E-value=1.4e+02 Score=34.68 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=65.4
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhH--HHHHHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVV 506 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~--~~~~~~~l~ 506 (1033)
-++.|=++-.++|.+...+... .+..++.+.+.+.|++++..=|--|+.++..|+...-..... ...+.+.+.
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~-----~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPES-----SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 4688999999999999988543 344555556788889999888999999999998743111111 245556666
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 507 SGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 507 ~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
.+|.++.++....-+..+..+-..|
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec 199 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTEC 199 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 6677555555445555555544444
No 154
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=68.60 E-value=1e+02 Score=30.22 Aligned_cols=50 Identities=8% Similarity=0.073 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhc--CChHHHHHHHHHHHHHHHhh--CC-CCchhHHHHHHHHhch
Q 001675 88 MVRDHILVFVAQ--VPPLLRVQLGECLKTIIHAD--YP-EQWPHLLDWVKHNLQD 137 (1033)
Q Consensus 88 ~ir~~Ll~~l~~--~~~~ir~~la~~i~~Ia~~d--~P-~~Wp~Ll~~l~~~l~s 137 (1033)
.||..|+.+|.+ +....-+.++.+++.+|..- +| +.|++|.+-|.+...+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~ 57 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN 57 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc
Confidence 478889999854 34456667777777777643 46 6799999988886543
No 155
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=67.54 E-value=3.2e+02 Score=34.03 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=88.2
Q ss_pred hhhCHHHHHHHhcCcccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHH
Q 001675 365 WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC 444 (1033)
Q Consensus 365 we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la 444 (1033)
+...+..|+.-..| +..++|-+|.+-+..+...+.... .+...+.+.+-+... ..+|+.++..--....++
T Consensus 274 ~s~v~~~~~~L~~D---dqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~----d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 274 KSEVLPTLIQLLRD---DQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVE----DGSWRVSYMVADKFSELS 344 (759)
T ss_pred HhhccHHHhhhhhc---chhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhc----ChhHHHHHHHhhhhhhHH
Confidence 44445555544433 347899999999999988875442 111111122211111 137888887776666666
Q ss_pred HhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccC----ChhHHHHHHHHHHhcCCCCCCchHHHH
Q 001675 445 DKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS----DQNNFRKALHSVVSGLRDPELPVRVDS 520 (1033)
Q Consensus 445 ~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~----~~~~~~~~~~~l~~~L~d~~~~Vr~~A 520 (1033)
..+... .........+.. .+.+...-.|..+..=...+..+. + ..-....+++.+-.+..|.+..||.+.
T Consensus 345 ~~~~~~-~~~~~~~~~~~~----l~~~~~~e~r~a~a~~~~~l~~~l-~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~ 418 (759)
T KOG0211|consen 345 SAVGPS-ATRTQLVPPVSN----LLKDEEWEVRYAIAKKVQKLACYL-NASCYPNIPDSSILPEVQVLVLDNALHVRSAL 418 (759)
T ss_pred HHhccc-cCcccchhhHHH----HhcchhhhhhHHhhcchHHHhhhc-CcccccccchhhhhHHHHHHHhcccchHHHHH
Confidence 665441 122222222222 223333333444443344443322 1 112345567888888889999999888
Q ss_pred HHHHHHHHHhccccchhhcchHHHHH
Q 001675 521 VFALRSFVEACRDLNEIRPILPQLLD 546 (1033)
Q Consensus 521 a~al~~~~~~~~~~~~l~p~l~~il~ 546 (1033)
|.-+.......+....+.+.++..+.
T Consensus 419 a~~~~~~~p~~~k~~ti~~llp~~~~ 444 (759)
T KOG0211|consen 419 ASVITGLSPILPKERTISELLPLLIG 444 (759)
T ss_pred hccccccCccCCcCcCccccChhhhh
Confidence 87776665544333444444444443
No 156
>PF05536 Neurochondrin: Neurochondrin
Probab=67.02 E-value=2.8e+02 Score=33.24 Aligned_cols=167 Identities=12% Similarity=0.155 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHH
Q 001675 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVL 659 (1033)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l 659 (1033)
++++.+++ .+.+++.+.++ ......+++|+..+. +....+. .-+....+|.+..++.+ .....+.++
T Consensus 94 ~~~~~~IP-~Lle~l~~~s~--------~~~v~dalqcL~~Ia-s~~~G~~--aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 94 PQMVSRIP-LLLEILSSSSD--------LETVDDALQCLLAIA-SSPEGAK--ALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHHHHHHH-HHHHHHHcCCc--------hhHHHHHHHHHHHHH-cCcHhHH--HHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 45666555 35555554321 123346778887777 3222222 22344566777766644 455689999
Q ss_pred HHHHHhhhcCC-----CCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCccc-ccccCCcchHHHHHHHHHHHh
Q 001675 660 EIVSYMTFFSP-----TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAH-FLTCKEPDYQQSLWSMVSSIM 733 (1033)
Q Consensus 660 ~ll~~l~~~~~-----~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~-~l~~~~~~~~~~il~i~~~~l 733 (1033)
.+|..++.... .-+..+..+.+.+...+......---+++..|..|+...+-. .....++.....+...+..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 99999886532 112223345555544443211112223466777776665311 111145578888888888888
Q ss_pred cCCCCCCCccCchhHHHHHHHHHcccC
Q 001675 734 ADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (1033)
Q Consensus 734 ~~~~~~~~~~~~a~~ll~~il~~~~~~ 760 (1033)
.++ .....+..+..+..+++...+..
T Consensus 241 ~sr-~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 241 QSR-LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hcC-CCHHHHHHHHHHHHHHHHHhChH
Confidence 775 44555778899999999998765
No 157
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=66.66 E-value=29 Score=31.34 Aligned_cols=88 Identities=9% Similarity=-0.012 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHhcC--CCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001675 720 DYQQSLWSMVSSIMAD--KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALY 797 (1033)
Q Consensus 720 ~~~~~il~i~~~~l~~--~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~ 797 (1033)
+++=.++..+...+.+ ...+..+...+.+-++.++...++.+..+.|+|+..+-..+....-..........|.+.
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~-- 84 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKT-- 84 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH--
Confidence 3444555666666655 223444467788999999997667788888887766655554443333333334444444
Q ss_pred hChHHHHHHHHh
Q 001675 798 YNSSLTLSILHK 809 (1033)
Q Consensus 798 ~~~~~~l~~L~~ 809 (1033)
.++..+-.++.+
T Consensus 85 L~~~~l~~ll~~ 96 (107)
T PF08064_consen 85 LDEEDLGPLLDQ 96 (107)
T ss_pred CCHHHHHHHHHH
Confidence 355666666653
No 158
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=66.09 E-value=25 Score=31.75 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHhcCCC--CCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001675 720 DYQQSLWSMVSSIMADKN--LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALY 797 (1033)
Q Consensus 720 ~~~~~il~i~~~~l~~~~--~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~ 797 (1033)
++.=.+++.+...+.+.. .+..++..+.+-++.++..+++++..++|+|..-+...|...+-.........++...
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~-- 84 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKT-- 84 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh--
Confidence 344455666666665543 2234467788999999998887788888887777666665443222222333334443
Q ss_pred hChHHHHHHHH
Q 001675 798 YNSSLTLSILH 808 (1033)
Q Consensus 798 ~~~~~~l~~L~ 808 (1033)
.+++.+-.+++
T Consensus 85 L~~~~l~~ll~ 95 (107)
T smart00802 85 LKEEELGPLLD 95 (107)
T ss_pred CCHHHHHHHHH
Confidence 34555555554
No 159
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=65.39 E-value=15 Score=32.07 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=41.2
Q ss_pred ccCCHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHH
Q 001675 382 DLYSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 445 (1033)
Q Consensus 382 d~~s~R~aa~~ll~~L~~~~~~~---~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~ 445 (1033)
+.|..|.-|++++..++++++.. .-+.+...+...+. +|. .++..++||+..+..++.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~----d~~--~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALL----DPK--KPLGTHYGAIVGLSALGP 78 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHHHH
Confidence 45789999999999999998753 22334443333333 343 378899999999998865
No 160
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=64.10 E-value=70 Score=28.88 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCCCC--Cch--HHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchh-hHHHHHHHHHHhhc
Q 001675 498 FRKALHSVVSGLRDPE--LPV--RVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE-DLVFTLETIVDKFG 572 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~--~~V--r~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~-~l~~~l~~iv~~~~ 572 (1033)
+-.+++.+-+.++|.+ .++ |..|..|+..++... ...+..+.|+|+..|-..+...+.. .-..+-..++....
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~--g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM--GKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 3444455555555543 444 899999999999974 5888899999988888777654433 24456666776665
Q ss_pred c-cccccHHHHHHHH
Q 001675 573 E-EMAPYALGLCQNL 586 (1033)
Q Consensus 573 ~-~i~p~~~~l~~~L 586 (1033)
+ ++.|....++..+
T Consensus 87 ~~~l~~ll~~~~~~i 101 (107)
T smart00802 87 EEELGPLLDQIFAAI 101 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 4555444444333
No 161
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=63.68 E-value=2.6e+02 Score=31.69 Aligned_cols=244 Identities=9% Similarity=0.158 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCC--cccchHHHHHH
Q 001675 406 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP--VGHLRAKAAWV 483 (1033)
Q Consensus 406 ~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~--~~~lr~ra~~~ 483 (1033)
++.+.++++.-+.+... .++..+-+.--.|+.++|.+-..-.=...+..+...|+..+.+-.+.++ +.-+..+++|+
T Consensus 37 ~~~l~~~i~rDi~~~~~-~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ 115 (372)
T PF12231_consen 37 MSLLLQFIQRDISSSSS-KGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWC 115 (372)
T ss_pred HHHHHHHHHHHHhcccC-CCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45566666666553211 1111256778888888887765432111122344555666666566533 44688889999
Q ss_pred HHh--hhccccCChhHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHHhccccchhhc----chHHHHHHHHHHhhhh
Q 001675 484 AGQ--YAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALRSFVEACRDLNEIRP----ILPQLLDEFFKLMNEV 555 (1033)
Q Consensus 484 l~~--~~~~~~~~~~~~~~~~~~l~~~L~d--~~~~Vr~~Aa~al~~~~~~~~~~~~l~p----~l~~il~~L~~ll~~~ 555 (1033)
++. |..... +.+.... +-.++..+.+ ++..|-.++..++++++... ++.+.. .++.++..++...+.+
T Consensus 116 ls~Q~f~~~~~-~~~~~~~-l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~--p~~M~~~~~~W~~~l~~~l~~~~k~i 191 (372)
T PF12231_consen 116 LSDQKFSPKIM-TSDRVER-LLAALHNIKNRFPSKSIISERLNIYKRLLSQF--PQQMIKHADIWFPILFPDLLSSAKDI 191 (372)
T ss_pred HHcCCCCCccc-chhhHHH-HHHHHHHhhccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 976 322111 2223233 3333334443 45567788999999999875 333333 4455666665544432
Q ss_pred chhhHHHHHHH--------------HHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHH
Q 001675 556 ENEDLVFTLET--------------IVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621 (1033)
Q Consensus 556 ~~~~l~~~l~~--------------iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~l 621 (1033)
.... ..+... +.+.++..+.+- .+++.+.+.+.++....+ ....+..+...+..+
T Consensus 192 r~~a-~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~--------~~~~a~~iW~~~i~L 260 (372)
T PF12231_consen 192 RTKA-ISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKD--------EYKLAMQIWSVVILL 260 (372)
T ss_pred HHHH-HHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcC--------CcchHHHHHHHHHHH
Confidence 2211 111111 111122222211 122223332323333211 112344555555555
Q ss_pred HHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhc
Q 001675 622 LESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 668 (1033)
Q Consensus 622 i~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~ 668 (1033)
+..-. ----.+....+.+.+.|++......--.++.-|..+++.
T Consensus 261 L~~~~---~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 261 LGSSR---LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred hCCch---hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 54311 011223456777778888777777777888888888874
No 162
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.38 E-value=21 Score=40.99 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=66.1
Q ss_pred hhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 001675 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (1033)
Q Consensus 431 ~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 510 (1033)
-.|.||..++|.++- +..+ .+...|.+.-.+-++++|+.....+|-++.-. . .+.+...+-..+.
T Consensus 567 DVrRAAViAlGfvc~---~D~~-------~lv~tvelLs~shN~hVR~g~AvaLGiacag~--G---~~~a~diL~~L~~ 631 (926)
T COG5116 567 DVRRAAVIALGFVCC---DDRD-------LLVGTVELLSESHNFHVRAGVAVALGIACAGT--G---DKVATDILEALMY 631 (926)
T ss_pred HHHHHHHHheeeeEe---cCcc-------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC--c---cHHHHHHHHHHhh
Confidence 456666666665432 2211 12222333323446778888888888775432 1 1333333344456
Q ss_pred CCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhc
Q 001675 511 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 556 (1033)
Q Consensus 511 d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 556 (1033)
|+.--||-.|+.|+..++-.+ .+.+.|.+..|.+++.+++.+-.
T Consensus 632 D~~dfVRQ~AmIa~~mIl~Q~--n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 632 DTNDFVRQSAMIAVGMILMQC--NPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred CcHHHHHHHHHHHHHHHHhhc--CcccChhHHHHHHHHHHHHhhhh
Confidence 777778888888888887775 47788888888888877775533
No 163
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=61.59 E-value=52 Score=40.46 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhch------hhHHHHHHHHHH
Q 001675 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN------EDLVFTLETIVD 569 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~------~~l~~~l~~iv~ 569 (1033)
..+..++|.++++|.-+++.||+++-.+|..++... +..+..|+..++..++.+-...++ +...++|..+-+
T Consensus 905 p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~--~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 905 PQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES--ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred cchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc--cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999999999873 577778999999999888765443 224456666666
Q ss_pred hh-cccccccHHHHHHHHHHH
Q 001675 570 KF-GEEMAPYALGLCQNLAAA 589 (1033)
Q Consensus 570 ~~-~~~i~p~~~~l~~~L~~~ 589 (1033)
+. ...+.||-++++..|...
T Consensus 983 ~~P~~~l~~fr~~Vl~al~k~ 1003 (1030)
T KOG1967|consen 983 RLPTKSLLSFRPLVLRALIKI 1003 (1030)
T ss_pred cCCCcccccccHHHHHHhhhc
Confidence 44 467889999998888763
No 164
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=61.41 E-value=67 Score=32.02 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHh
Q 001675 614 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEAL 687 (1033)
Q Consensus 614 ~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~ 687 (1033)
..+.+..++.. ..++..-.+.+.+++.+...|+....+.+..++.++..++..++.+.+.+...+..++..+
T Consensus 58 A~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 58 ARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 34556666666 2333445566788888899998888999999999999998777666666554444444443
No 165
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=59.31 E-value=3e+02 Score=30.97 Aligned_cols=204 Identities=14% Similarity=0.192 Sum_probs=88.7
Q ss_pred chhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhcc---ccCChhHHHHHHHHHHhcCC-------CCCCc--hHHHH
Q 001675 453 YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI---NFSDQNNFRKALHSVVSGLR-------DPELP--VRVDS 520 (1033)
Q Consensus 453 ~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~---~~~~~~~~~~~~~~l~~~L~-------d~~~~--Vr~~A 520 (1033)
|..+++.| |.|.++...+-...+..|++|..... .+-........+..++.++- +..++ +-..-
T Consensus 66 Y~g~~~k~----i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai 141 (373)
T PF14911_consen 66 YFGDFEKW----IKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAI 141 (373)
T ss_pred HHHHHHHH----cCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHH
Confidence 33345444 55555555666778888888885431 11111123445555555541 22222 11122
Q ss_pred HHHHHHHHHhc----c-ccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh
Q 001675 521 VFALRSFVEAC----R-DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN 595 (1033)
Q Consensus 521 a~al~~~~~~~----~-~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~ 595 (1033)
-+.+..+++.- . ....+...+.+++.+++....-..+.....-+..+..........+..-+++.+...|++.-.
T Consensus 142 ~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~ 221 (373)
T PF14911_consen 142 RKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKG 221 (373)
T ss_pred HHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 22222222221 0 233444445555555544433222111100011111111222223344555556665555322
Q ss_pred hccCCCCCCChhHHHHHHHHHHHHHHHHhcc-CChHHHHHHHhhHH-HHHHHHcc-cCchhHHHHHHHHHHHhhhcC
Q 001675 596 TAEADEDADDPGALAAVGCLRAISTILESVS-RLPHLFVQIEPTLL-PIMRRMLT-TDGQEVFEEVLEIVSYMTFFS 669 (1033)
Q Consensus 596 ~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~-~~~~~~~~l~~~~~-p~i~~il~-~~~~~~~~~~l~ll~~l~~~~ 669 (1033)
.... + ....++..|..+++.+. .+......+...+. |+++..+- ++....-.-+.+++..++..+
T Consensus 222 -~~p~-------p-~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~ 289 (373)
T PF14911_consen 222 -SAPP-------P-RLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESC 289 (373)
T ss_pred -CCCC-------C-cHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcc
Confidence 1111 1 23366777778887752 12222233334444 44444432 324445556777777777665
No 166
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.15 E-value=92 Score=37.48 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=68.1
Q ss_pred hhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 001675 431 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (1033)
Q Consensus 431 ~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 510 (1033)
-.|.||..++|.+.. +.++ .+ ...|-+.-.+=+|++|+-|...+|-++.-. -....+..+=..+.
T Consensus 570 DVrRaAVialGFVl~---~dp~---~~----~s~V~lLses~N~HVRyGaA~ALGIaCAGt-----G~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLF---RDPE---QL----PSTVSLLSESYNPHVRYGAAMALGIACAGT-----GLKEAINLLEPLTS 634 (929)
T ss_pred HHHHHHHHHheeeEe---cChh---hc----hHHHHHHhhhcChhhhhhHHHHHhhhhcCC-----CcHHHHHHHhhhhc
Confidence 567777777775543 2211 11 122222222446888888888888876432 12334444444445
Q ss_pred CCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhch
Q 001675 511 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 557 (1033)
Q Consensus 511 d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 557 (1033)
|+.--||-.|+.|+.-+.-.+ .+.+.|.+..+-+.+.+.+.+-..
T Consensus 635 D~~~fVRQgAlIa~amIm~Q~--t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 635 DPVDFVRQGALIALAMIMIQQ--TEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred ChHHHHHHHHHHHHHHHHHhc--ccccCchHHHHHHHHHHHhhhhhh
Confidence 776668888888888777654 577888888888888888776433
No 167
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=58.99 E-value=36 Score=38.48 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=71.4
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCc--chhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhc---cccCChhHHHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEP--YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH---INFSDQNNFRKALH 503 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~--~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~---~~~~~~~~~~~~~~ 503 (1033)
+.|.++-+..++|.+...+....+ +..-++.=..+-+--.......-+|..||+.+|..-+ ..|.+-.....+++
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~ 576 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFN 576 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHH
Confidence 568888888888888876652211 1111111111111001112234589999999999754 23444456788899
Q ss_pred HHHhcCCC-CCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHh
Q 001675 504 SVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (1033)
Q Consensus 504 ~l~~~L~d-~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll 552 (1033)
.++..+.+ .+.-||+.||.||..-- .++....+.+-....++..+
T Consensus 577 ~L~~Lv~~~~NFKVRi~AA~aL~vp~----~re~~~d~~~Lsw~~lv~aL 622 (728)
T KOG4535|consen 577 ALTSLVTSCKNFKVRIRAAAALSVPG----KREQYGDQYALSWNALVTAL 622 (728)
T ss_pred HHHHHHHHhccceEeehhhhhhcCCC----CcccchhHHhHHHHHHHHHH
Confidence 99988875 68899999999986422 23444444555555555444
No 168
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=56.46 E-value=74 Score=30.21 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHH
Q 001675 474 GHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFAL 524 (1033)
Q Consensus 474 ~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~L~d~~~~Vr~~Aa~al 524 (1033)
+-+...++.+++.|..+. +.+.. ..+++.+++.|++++. +..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 678889999999998754 44222 2378888888876654 88888875
No 169
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=56.38 E-value=2.8e+02 Score=29.72 Aligned_cols=152 Identities=12% Similarity=0.163 Sum_probs=71.6
Q ss_pred HhhHHHHHHHHcccCchhHHHHHHHHHHHhhhc------CCCCCHhHHHHHHHHHHHhhhhHh-----hhhhhhhhhhhh
Q 001675 636 EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF------SPTISLEMWSLWPLMMEALADWAI-----DFFPNILVPLDN 704 (1033)
Q Consensus 636 ~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~------~~~isp~l~~l~~~l~~~~~~~~~-----~~~~~~~~~L~~ 704 (1033)
..-++|++... .+...++..++.|+..++.- ..+-++.-+..++.+.+.+...-. ..+..++..+..
T Consensus 43 ~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~ 120 (266)
T PF04821_consen 43 QKDLIPILISY--KDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLP 120 (266)
T ss_pred hhhHHHHHHhc--cCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 44677877653 33567888899999888741 111234455556655554432211 223333333333
Q ss_pred hhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCcc--CchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhh
Q 001675 705 YISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDI--EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKS 782 (1033)
Q Consensus 705 ~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~--~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~ 782 (1033)
.+.......-. .+...++.++..+..++.-+....... .....+-..++..+.. ..++..++...++....
T Consensus 121 ~l~~~~~~rt~-~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~------~~v~~lLL~l~s~~~~~ 193 (266)
T PF04821_consen 121 PLEKDWEDRTE-RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFE------SGVLDLLLTLASSPQES 193 (266)
T ss_pred HhhcccccCCH-HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHH------cCHHHHHHHHHhCcccc
Confidence 33322221111 122466777777777775322111111 1222333333333321 13444444444443334
Q ss_pred HHHHHHHHHHHHHh
Q 001675 783 YLKCLLVQVIADAL 796 (1033)
Q Consensus 783 ~~~~~~l~v~~~~~ 796 (1033)
.+...++++|..++
T Consensus 194 ~f~~~lLEIi~ll~ 207 (266)
T PF04821_consen 194 DFNLLLLEIIYLLF 207 (266)
T ss_pred chhhHHHHHHHHHH
Confidence 45556777777665
No 170
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=55.96 E-value=53 Score=32.28 Aligned_cols=49 Identities=29% Similarity=0.441 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhCCCCch-----hHHHHHHHHhchh---hHHHHHHHHHHHHHHhc
Q 001675 107 QLGECLKTIIHADYPEQWP-----HLLDWVKHNLQDQ---QVYGALFVLRILSRKYE 155 (1033)
Q Consensus 107 ~la~~i~~Ia~~d~P~~Wp-----~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~ 155 (1033)
.++.+++.+....=|+.|+ .++|.+..+++|. ++..||.+|..+++.|.
T Consensus 45 vlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred HHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 3577777777666677785 7999999999998 67899999999999884
No 171
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=55.16 E-value=3.8e+02 Score=30.89 Aligned_cols=283 Identities=12% Similarity=0.133 Sum_probs=137.7
Q ss_pred CChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001675 35 PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKT 114 (1033)
Q Consensus 35 p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~ 114 (1033)
|.+...++.++...+ ...+.|...+.+--.+...=.....+...... +...=...+..|...+.-|....+.+++.
T Consensus 52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~---~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALL---KKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhc---cccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 678888889887644 66777777777766665421100000000000 00111334445667788899999999999
Q ss_pred HHHhhCCCCchh----HHHHHHHHhchh----hHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 001675 115 IIHADYPEQWPH----LLDWVKHNLQDQ----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQI 186 (1033)
Q Consensus 115 Ia~~d~P~~Wp~----Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~ 186 (1033)
++...--..=.. +++.+.+.++++ .+..|+.||..+.+.=++ |..+-. ...++.|.+++....
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~-----R~~f~~--~~~v~~L~~~L~~~~-- 198 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEY-----RFAFVL--ADGVPTLVKLLSNAT-- 198 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchH-----HHHHHH--ccCHHHHHHHHhhcc--
Confidence 987542111112 444455555432 467788899888864322 211111 123455555554311
Q ss_pred cCCChhHHHHHHHHHHHhHHhhhhcC-CcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHH
Q 001675 187 VNPSLEVADLIKLICKIFWSSIYLEI-PKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHIL 265 (1033)
Q Consensus 187 ~~~~~~~~~~~~~~lki~~~l~~~~l-p~~~~~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l 265 (1033)
...++++-++=|++-+.+.+- -+.+.. ...++.+..++.... -.|+-+-++.++
T Consensus 199 -----~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~----~~~i~~l~~i~k~s~----------------KEKvvRv~l~~l 253 (429)
T cd00256 199 -----LGFQLQYQSIFCIWLLTFNPHAAEVLKR----LSLIQDLSDILKEST----------------KEKVIRIVLAIF 253 (429)
T ss_pred -----ccHHHHHHHHHHHHHHhccHHHHHhhcc----ccHHHHHHHHHHhhh----------------hHHHHHHHHHHH
Confidence 124667777777776653211 011110 123444445554321 125555555555
Q ss_pred HHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHH-HHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCChh-hhhhhhhhH
Q 001675 266 NRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILE-CHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNS-MYNLLQPRL 343 (1033)
Q Consensus 266 ~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~-~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~-~~~~~~~~l 343 (1033)
..+...-.+. . .. ..+.+.++. .+...+......+|. |.=+..-++++...++... ....+..+.
T Consensus 254 ~Nll~~~~~~---~-~~--------~~~~~~mv~~~l~~~l~~L~~rk~~-DedL~edl~~L~e~L~~~~k~ltsfD~Y~ 320 (429)
T cd00256 254 RNLISKRVDR---E-VK--------KTAALQMVQCKVLKTLQSLEQRKYD-DEDLTDDLKFLTEELKNSVQDLSSFDEYK 320 (429)
T ss_pred HHHhhccccc---c-hh--------hhHHHHHHHcChHHHHHHHhcCCCC-cHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555431100 0 00 112333443 334444443445564 4445677888877664321 111234455
Q ss_pred HHHHHHHhhhcccCCh--hhHhhhhhCHHHH
Q 001675 344 DVLLFEIVFPLMCFND--NDQKLWDEDPHEY 372 (1033)
Q Consensus 344 ~~li~~~i~p~l~l~~--~d~e~we~Dp~ef 372 (1033)
.++-. +.+..+| .+...|.++...|
T Consensus 321 ~El~s----g~L~WSp~H~se~FW~EN~~kf 347 (429)
T cd00256 321 SELRS----GRLHWSPVHKSEKFWRENADRL 347 (429)
T ss_pred HHHhc----CCccCCCCCCCchHHHHHHHHH
Confidence 55333 3333333 3456777776555
No 172
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=54.29 E-value=1.1e+02 Score=29.95 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhh
Q 001675 612 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 666 (1033)
Q Consensus 612 ~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~ 666 (1033)
..+++++..|+.+++.. + .++-+.++|.+-.++..-...+.|..|+-++.++
T Consensus 105 ~~vv~ai~~If~~l~~~--c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 105 TAVVQAIMYIFKSLGLK--C-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHhcCcC--c-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 36778888888776432 2 4456778888887776544577777777776665
No 173
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=53.89 E-value=3.2e+02 Score=30.40 Aligned_cols=151 Identities=14% Similarity=0.205 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhHHHHHH---HHHHHHHhc--CChHHHHHHHH
Q 001675 36 QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVR---DHILVFVAQ--VPPLLRVQLGE 110 (1033)
Q Consensus 36 ~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~k~~ir---~~Ll~~l~~--~~~~ir~~la~ 110 (1033)
+.+..|+.-+. ..+.+.|.-++..+.|.+++.-... .++. ...+- ..++..|.. ..+.+...++.
T Consensus 76 dll~~Li~~L~--~L~fEsrKdv~~if~~llr~~~~~~-------~~p~-v~yl~~~~peil~~L~~gy~~~dial~~g~ 145 (335)
T PF08569_consen 76 DLLYLLIRNLP--KLDFESRKDVAQIFSNLLRRQIGSR-------SPPT-VDYLERHRPEILDILLRGYENPDIALNCGD 145 (335)
T ss_dssp THHHHHHHTGG--GS-HHHHHHHHHHHHHHHT--BTTB---------HH-HHHHHT--THHHHHHHHGGGSTTTHHHHHH
T ss_pred CHHHHHHHHhh--hCCCcccccHHHHHHHHHhhccCCC-------CCch-HHHHHhCCHHHHHHHHHHhcCccccchHHH
Confidence 44444444332 3578999999999999997765532 2111 22231 235554432 34556777777
Q ss_pred HHHHHHHhhCCCC---chhHHHHHHHHhchh--hH-HHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHHHHHh
Q 001675 111 CLKTIIHADYPEQ---WPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLV 184 (1033)
Q Consensus 111 ~i~~Ia~~d~P~~---Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~ 184 (1033)
.++..++++--.+ +++.+..+.+.++.+ .+ --|+.++++++.... ....+.+..-+..+...+..++
T Consensus 146 mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-------~~~a~fl~~n~d~ff~~~~~Ll 218 (335)
T PF08569_consen 146 MLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-------KLVAEFLSNNYDRFFQKYNKLL 218 (335)
T ss_dssp HHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-------HHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHHHHc
Confidence 7777666542100 122333355555555 22 456777777775421 2234445555666667777777
Q ss_pred hccCCChhHHHHHHHHHHHhHHhh
Q 001675 185 QIVNPSLEVADLIKLICKIFWSSI 208 (1033)
Q Consensus 185 ~~~~~~~~~~~~~~~~lki~~~l~ 208 (1033)
.+++ ...++..+|.+..+.
T Consensus 219 ~s~N-----YvtkrqslkLL~ell 237 (335)
T PF08569_consen 219 ESSN-----YVTKRQSLKLLGELL 237 (335)
T ss_dssp T-SS-----HHHHHHHHHHHHHHH
T ss_pred cCCC-----eEeehhhHHHHHHHH
Confidence 6543 556788888887765
No 174
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.40 E-value=5.7e+02 Score=32.31 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=58.2
Q ss_pred HHHHHhhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc---ccchhhcchHHHHHHHHHHhhhhc
Q 001675 481 AWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---DLNEIRPILPQLLDEFFKLMNEVE 556 (1033)
Q Consensus 481 ~~~l~~~~~~~~~~~-~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~---~~~~l~p~l~~il~~L~~ll~~~~ 556 (1033)
+.-+|.++......- ..+..++--++..+.+++..|+..|..|+..+++.++ .+..++..+.=++..+-..++..+
T Consensus 569 ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~ 648 (1014)
T KOG4524|consen 569 LDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSG 648 (1014)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCC
Confidence 344555554321111 2233333444555678888899999999999999875 233345555555566555555322
Q ss_pred -hhhHHHHHHHHHHhhcccccccHHHHHHHH
Q 001675 557 -NEDLVFTLETIVDKFGEEMAPYALGLCQNL 586 (1033)
Q Consensus 557 -~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L 586 (1033)
+..+..++.-+...-.....|+..++++..
T Consensus 649 ~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i 679 (1014)
T KOG4524|consen 649 MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTI 679 (1014)
T ss_pred CCchhHHHHHHHhhcCCCCchhhHHHHHHHH
Confidence 234445555444444444555555544433
No 175
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=52.41 E-value=8.3e+02 Score=33.94 Aligned_cols=218 Identities=13% Similarity=0.176 Sum_probs=119.0
Q ss_pred ChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCCh--hHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHhhCC---CCc
Q 001675 51 DLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQ--VDKDMVRDHILVFVA-QVPPLLRVQLGECLKTIIHADYP---EQW 124 (1033)
Q Consensus 51 ~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~--~~k~~ir~~Ll~~l~-~~~~~ir~~la~~i~~Ia~~d~P---~~W 124 (1033)
+..+|..|.-.||..-.+.-...+ ++. -.|..+|- +...|. .....+|..+..|+..|...-.. ..|
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE------L~~f~FQkefLkP-fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGW 1222 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE------LANYNFQNEFMKP-FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW 1222 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh------hhchhHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 456788888878777666554311 211 13444433 223333 45568999999999988765433 579
Q ss_pred hhHHHHHHHHhchh---hHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHHHHHhhccC---CChhHHHHHH
Q 001675 125 PHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVN---PSLEVADLIK 198 (1033)
Q Consensus 125 p~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~---~~~~~~~~~~ 198 (1033)
+..+.-+-...... -+..|..++..|++++-. .+...-...|..+...+....++.. -+..+...++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~-------~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP-------YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLR 1295 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh-------hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHH
Confidence 99998887766554 356788888888876421 0000002445555555555543321 1222333333
Q ss_pred HHHHHh-HHhh-hhcC---------------------CcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchh
Q 001675 199 LICKIF-WSSI-YLEI---------------------PKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWW 255 (1033)
Q Consensus 199 ~~lki~-~~l~-~~~l---------------------p~~~~~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~ 255 (1033)
.+..-+ ...+ .... +......+...-|++++..+...- .|+ | .
T Consensus 1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~-------~D~--R-----l 1361 (1780)
T PLN03076 1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELS-------FDP--R-----P 1361 (1780)
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHh-------cCC--c-----H
Confidence 322212 1100 0000 000011233567998877654421 121 1 3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHH
Q 001675 256 KVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECH 301 (1033)
Q Consensus 256 k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~ 301 (1033)
.+|+.+++.|-+++..||..- ...||.......+.+++..+
T Consensus 1362 EVR~~ALqtLF~iL~~yG~~F-----s~~~W~~if~~VLFPIFd~l 1402 (1780)
T PLN03076 1362 EIRKSALQVLFDTLRNHGHLF-----SLPLWERVFESVLFPIFDYV 1402 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhccC-----CHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999998731 13577766666666665544
No 176
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=52.38 E-value=1.3e+02 Score=30.53 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001675 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 497 ~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
...+++..+++.-...--.||..|+.++..++..
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~ 37 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHS 37 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555443333345899999999999843
No 177
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=52.16 E-value=2.9e+02 Score=32.52 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=55.9
Q ss_pred HHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 457 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 457 l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~--~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
+.++ ..|++-.+.++..-+|.|+|..+....++. +. +.....++..+...+-|.+..||..|..+|..+-...
T Consensus 89 V~~~-~~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 89 VAGT-FYHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHH-HHHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 3344 467777777888889999999999988754 22 3455666777777777899999999999999987654
No 178
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.59 E-value=1.3e+02 Score=38.82 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=55.4
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
+|..|.+|..++|.+... + -+ ..+.+.|.++++.+|..|.+.|+++.. + ....+.+...
T Consensus 820 d~~VR~~Aa~aL~~l~~~--~------a~-----~~L~~~L~D~~~~VR~~A~~aL~~~~~----~----~~a~~~L~~a 878 (897)
T PRK13800 820 AWQVRQGAARALAGAAAD--V------AV-----PALVEALTDPHLDVRKAAVLALTRWPG----D----PAARDALTTA 878 (897)
T ss_pred ChHHHHHHHHHHHhcccc--c------hH-----HHHHHHhcCCCHHHHHHHHHHHhccCC----C----HHHHHHHHHH
Confidence 788999998888865421 1 11 334556678889999999999988621 2 3345566677
Q ss_pred CCCCCCchHHHHHHHHHH
Q 001675 509 LRDPELPVRVDSVFALRS 526 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa~al~~ 526 (1033)
++|++.-||..|+.||..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 888888899999999863
No 179
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.45 E-value=5.5e+02 Score=31.27 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=57.3
Q ss_pred HHHHHhhcccCCCCcccchHHHHHHHHhhhccc-cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
+.+..|++-...++..-+|.|+|..+....+.. -.+...+..+...+...+.|..+.||..|..||.++-.+.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 334466776667778889999999999987632 1244567888888888889999999999999999987554
No 180
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=50.10 E-value=3.3e+02 Score=28.93 Aligned_cols=120 Identities=14% Similarity=0.142 Sum_probs=68.7
Q ss_pred hhHhHHHHHHHHHHHhhhcC--CcchhHHHHHHHHhhcccCCCC-cc---cchHHH---HHHHHhhhccccCChhHHHHH
Q 001675 431 RQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEFSSP-VG---HLRAKA---AWVAGQYAHINFSDQNNFRKA 501 (1033)
Q Consensus 431 ~~keaal~~lg~la~~l~~~--~~~~~~l~~~l~~~v~p~l~~~-~~---~lr~ra---~~~l~~~~~~~~~~~~~~~~~ 501 (1033)
-.-++++-.+..++..+... ..+..-...|+... +..+.+. .. +.|+.| ..+.+-+....-.....+...
T Consensus 112 GAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~-l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~ 190 (255)
T PF10350_consen 112 GAFESVYPGFTALCRRLWSSNNPELSELPEEWLDEL-LEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRT 190 (255)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHH-HHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHH
Confidence 45677777777777777632 22333334555443 3333333 11 444443 222222322111111456777
Q ss_pred HHHHHhcCCCCCC--------chHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHH
Q 001675 502 LHSVVSGLRDPEL--------PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 551 (1033)
Q Consensus 502 ~~~l~~~L~d~~~--------~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~l 551 (1033)
+..+++.-..+.. .-|+.|...|+.++.+....+.+.||+.+.+.--+.-
T Consensus 191 ~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~ 248 (255)
T PF10350_consen 191 MKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKG 248 (255)
T ss_pred HHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 7777766554322 4788999999999998877788889988887655443
No 181
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=50.04 E-value=5.4 Score=34.17 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=3.4
Q ss_pred CCCCCC-chHHHHH
Q 001675 964 SPIDEV-DPFVFFV 976 (1033)
Q Consensus 964 ~pl~~v-d~~~~~~ 976 (1033)
-|+..+ -.+.||.
T Consensus 41 ~p~p~fgea~~~~~ 54 (101)
T PF09026_consen 41 VPVPEFGEAMAYFT 54 (101)
T ss_dssp -----HHHHHHHHH
T ss_pred ccchhHHHHHhhcc
Confidence 466654 3444443
No 182
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.74 E-value=68 Score=36.80 Aligned_cols=76 Identities=20% Similarity=0.104 Sum_probs=52.0
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
++..+.+++-++|... ..+ . ..+.+.+++++|.+|+.|+.++|.+.... ..+.+...
T Consensus 130 ~p~vR~aal~al~~r~-----~~~----~-----~~L~~~L~d~d~~Vra~A~raLG~l~~~~---------a~~~L~~a 186 (410)
T TIGR02270 130 EPPGRAIGLAALGAHR-----HDP----G-----PALEAALTHEDALVRAAALRALGELPRRL---------SESTLRLY 186 (410)
T ss_pred ChHHHHHHHHHHHhhc-----cCh----H-----HHHHHHhcCCCHHHHHHHHHHHHhhcccc---------chHHHHHH
Confidence 5677878886666511 111 1 22444567889999999999999876421 22234455
Q ss_pred CCCCCCchHHHHHHHHHHH
Q 001675 509 LRDPELPVRVDSVFALRSF 527 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa~al~~~ 527 (1033)
+.|.+..||..|+.++..+
T Consensus 187 l~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 187 LRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HcCCCHHHHHHHHHHHHHc
Confidence 8899999999999999654
No 183
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=48.84 E-value=4e+02 Score=29.24 Aligned_cols=95 Identities=12% Similarity=0.159 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcc-CCh-HHHHHHHhhHHHHHHHHcccCch-hHHHHHHHHHHHhhhcCC--CCCHhHHHHHHHHHHHh
Q 001675 613 GCLRAISTILESVS-RLP-HLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEAL 687 (1033)
Q Consensus 613 ~~l~~i~~li~~~~-~~~-~~~~~l~~~~~p~i~~il~~~~~-~~~~~~l~ll~~l~~~~~--~isp~l~~l~~~l~~~~ 687 (1033)
.+..+++.+.+++. .++ -.+-.--..+.-.+..||++... ..-.-++++...+....+ .+..++.-..|.++..+
T Consensus 27 D~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~ 106 (307)
T PF04118_consen 27 DYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLF 106 (307)
T ss_pred HHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHH
Confidence 34555556655554 211 11111123455667777776532 222333333333332211 12222222223333333
Q ss_pred hhhHhhhhhhhhhhhhhhhc
Q 001675 688 ADWAIDFFPNILVPLDNYIS 707 (1033)
Q Consensus 688 ~~~~~~~~~~~~~~L~~~i~ 707 (1033)
.--....-+.++.+++.|+.
T Consensus 107 ~~asi~Vkp~lL~i~e~~~l 126 (307)
T PF04118_consen 107 SYASIQVKPQLLDIYEKYYL 126 (307)
T ss_pred HHHHHhhHHHHHHHHHHHhc
Confidence 22234455667777777654
No 184
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.03 E-value=1.4e+02 Score=30.24 Aligned_cols=88 Identities=23% Similarity=0.321 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHH---HHHh---h
Q 001675 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLET---IVDK---F 571 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~---iv~~---~ 571 (1033)
.-.+++.....|.+.+-|-|..|-.-+..++... .+.+.|.+|+++-.|-..+...+.+.+..+|+. ++.. .
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~--g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAG--GEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc--ccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 3456777777788878888999999988888775 588999999999998888877776655444444 3322 5
Q ss_pred cccccccHHHHHHHHH
Q 001675 572 GEEMAPYALGLCQNLA 587 (1033)
Q Consensus 572 ~~~i~p~~~~l~~~L~ 587 (1033)
+..+.||.-+|+..+-
T Consensus 190 G~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLN 205 (262)
T ss_pred chhhhhHHHHhhhhhh
Confidence 6789999988887654
No 185
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=47.83 E-value=97 Score=34.42 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChh------HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHH
Q 001675 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN------NFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 529 (1033)
Q Consensus 456 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~------~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~ 529 (1033)
+.+.|+. +.-..+.+++-+.|+.++.++|.+-.-. .+.+ .-..-+..++..|.|++..+|..|-+.++-|+.
T Consensus 206 n~d~ff~-~~~~Ll~s~NYvtkrqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 206 NYDRFFQ-KYNKLLESSNYVTKRQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp THHHHHH-HHHHHCT-SSHHHHHHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHccCCCeEeehhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 4556665 4555678888889999999999974210 0000 114456788899999999999999999999999
Q ss_pred hccccc
Q 001675 530 ACRDLN 535 (1033)
Q Consensus 530 ~~~~~~ 535 (1033)
++..+.
T Consensus 284 Np~K~~ 289 (335)
T PF08569_consen 284 NPNKPP 289 (335)
T ss_dssp -SS-BH
T ss_pred CCCCCh
Confidence 875333
No 186
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.34 E-value=6e+02 Score=30.87 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=36.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh----h-HHHHHHHHHHHHHHh
Q 001675 91 DHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ----Q-VYGALFVLRILSRKY 154 (1033)
Q Consensus 91 ~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~----~-~~~~L~~L~~i~k~~ 154 (1033)
+.+..-|.+.++.-....-.+|+.|+.+|+-+. +-++|-.+|-|+ - -..+-.||..++|..
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~re~~ea---~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s 179 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGSREMAEA---FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS 179 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHH---hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC
Confidence 333344455566656666678888888887654 344444555555 1 245556666777764
No 187
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=45.87 E-value=6.5e+02 Score=30.84 Aligned_cols=159 Identities=11% Similarity=0.120 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHH
Q 001675 606 PGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMME 685 (1033)
Q Consensus 606 ~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~ 685 (1033)
+++..+.|++.+++++...+...+..-..++..++|.+.-.++.....+...++++++.+ .-.-+....+-++|...++
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~n 506 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHN 506 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHH
Confidence 466778899999999988554433333445555555555455555556677888888887 2222233456788999999
Q ss_pred HhhhhHhhhhhhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhc-CCCCCCCccCchhHHHHHHHHHcccCchhc
Q 001675 686 ALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMA-DKNLEDGDIEPAPKLIEVVFQNCKGQVDHW 764 (1033)
Q Consensus 686 ~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~-~~~~~~~~~~~a~~ll~~il~~~~~~~~~~ 764 (1033)
|+++......-+....+..|+... ++ ++..-+.+-.+.++++. ++..+ ....-.+++.++.+.+..+.|+
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~--q~----h~k~sahVp~tmekLLsLSn~fe---iD~LS~vMe~fVe~fseELspf 577 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNE--QS----HEKFSAHVPETMEKLLSLSNTFE---IDPLSMVMESFVEYFSEELSPF 577 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhch--hh----hHHHHhhhhHHHHHHHHhccccc---chHHHHHHHHHHHHhHHhhchh
Confidence 987644333333445666666544 11 12333444445555553 22122 1235677788888888777777
Q ss_pred hHHHHHHHHH
Q 001675 765 VEPYLRITVE 774 (1033)
Q Consensus 765 l~~il~~~~~ 774 (1033)
-+.+.+.+.+
T Consensus 578 a~eLa~~Lv~ 587 (970)
T COG5656 578 APELAGSLVR 587 (970)
T ss_pred HHHHHHHHHH
Confidence 7766666655
No 188
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=44.47 E-value=44 Score=24.89 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 001675 84 VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHAD 119 (1033)
Q Consensus 84 ~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d 119 (1033)
.+..++|+-+++.|...++.-|.++..+|+.|.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 467789999999998877888889999999887543
No 189
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.41 E-value=3e+02 Score=36.57 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=98.2
Q ss_pred CCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001675 34 TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLK 113 (1033)
Q Consensus 34 ~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~ 113 (1033)
+|.|+..+.... ..+..-.+|.++.-+|+-.|=.+=- ...+..|.-|+..+...+.+....+|...+.+++
T Consensus 1524 ~~e~l~~l~~~~-~~~~tw~vr~avl~fl~~~vy~n~F--------v~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Ls 1594 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLT-ADSSTWRVRSAVLKFLQTVVYSNIF--------VSQELRRDDIRKLLESLLNDDQIEVREEAAKCLS 1594 (1710)
T ss_pred HHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 566777776633 3345678898877777777755433 2467789999999999998888889999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHhchh-----hHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q 001675 114 TIIHADYPEQWPHLLDWVKHNLQDQ-----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVN 188 (1033)
Q Consensus 114 ~Ia~~d~P~~Wp~Ll~~l~~~l~s~-----~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~ 188 (1033)
.+.+.-|-.-=++-........++. ..|||...|..++-.+- ..++..+|..+....+...+
T Consensus 1595 gl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafP-----------y~vP~wip~~L~~Ls~fa~e-- 1661 (1710)
T KOG1851|consen 1595 GLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFP-----------YVVPLWIPKPLMNLSSFARE-- 1661 (1710)
T ss_pred HHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcc-----------ccchhhhHHHHHHHHhhcCC--
Confidence 9998765432232222222223322 56999999999996553 45566788777766665432
Q ss_pred CChhHHHHHHHHHHHhHH
Q 001675 189 PSLEVADLIKLICKIFWS 206 (1033)
Q Consensus 189 ~~~~~~~~~~~~lki~~~ 206 (1033)
+....+..+-++.-|+.
T Consensus 1662 -~~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1662 -SAAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred -chHHHHHHHHHHHHHHH
Confidence 22233334444444544
No 190
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=44.24 E-value=18 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 001675 501 ALHSVVSGLRDPELPVRVDSVFALRSFV 528 (1033)
Q Consensus 501 ~~~~l~~~L~d~~~~Vr~~Aa~al~~~~ 528 (1033)
+++.++.+|.+++..++..|+.||.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667777777778889999999998875
No 191
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.10 E-value=1.6e+02 Score=32.42 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=73.7
Q ss_pred HHhcCCCCCCCccCchhHHHHHHHHHcccCchhchH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhChHHHHHHHHh
Q 001675 731 SIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVE-PYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHK 809 (1033)
Q Consensus 731 ~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~-~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~ 809 (1033)
..+++...+..+...++.-++.+++++....+ .++ ..+..++. .-+.....+|..-..|+..|+-.||..-.++++.
T Consensus 88 ~~~~~~s~~le~ke~ald~Le~lve~iDnAnd-l~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 88 VILNSSSVDLEDKEDALDNLEELVEDIDNAND-LISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred hccCcccCCHHHHHHHHHHHHHHHHhhhhHHh-HhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 33444444555567788888888888764321 000 11222222 2335567888888999999999999998899886
Q ss_pred hCchHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccccC
Q 001675 810 LGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTAD 858 (1033)
Q Consensus 810 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~~~ 858 (1033)
| +++..+..+. +=...+.|+=...|+++++....+
T Consensus 166 -~----~L~~Ll~~ls---------~~~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 166 -G----ALSKLLKILS---------SDDPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred -c----cHHHHHHHHc---------cCCCchHHHHHHHHHHHHHhcCcH
Confidence 2 4455555555 555667777788899999987654
No 192
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=43.67 E-value=5.3e+02 Score=29.20 Aligned_cols=276 Identities=11% Similarity=0.111 Sum_probs=125.8
Q ss_pred cchHHHHHHHHhhhcc----ccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHH
Q 001675 475 HLRAKAAWVAGQYAHI----NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 550 (1033)
Q Consensus 475 ~lr~ra~~~l~~~~~~----~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ 550 (1033)
-|-..|+.++|-|-.. ..-+.+...-++...+..+.++..+ +..+..++..+....-.+..+.......+-..+.
T Consensus 61 ~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~-K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~ 139 (372)
T PF12231_consen 61 RLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSP-KSICTHYLWCLSDQKFSPKIMTSDRVERLLAALH 139 (372)
T ss_pred HHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHH
Confidence 4777888888887421 0112234455888888888776544 2233333333332221223333333333333333
Q ss_pred Hhhh-hchh----hHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhc
Q 001675 551 LMNE-VENE----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV 625 (1033)
Q Consensus 551 ll~~-~~~~----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~ 625 (1033)
-+.+ +..- +-..++..++..+++.....+..=+..+.. .+.... +. .+..+......+...+
T Consensus 140 ~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~---~l~~~~---------k~-ir~~a~~l~~~~~~~l 206 (372)
T PF12231_consen 140 NIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFP---DLLSSA---------KD-IRTKAISLLLEAKKCL 206 (372)
T ss_pred HhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcc---------hH-HHHHHHHHHHHHHHHh
Confidence 3332 3332 244566666666655444333222222222 112111 11 1112222222333333
Q ss_pred cCChHHHHHHHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhc--CCCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Q 001675 626 SRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF--SPTISLEMWSLWPLMMEALADWAIDFFPNILVPLD 703 (1033)
Q Consensus 626 ~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~--~~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~ 703 (1033)
+.+.. +...+...+...+.++ .+.+...+-+..++.. .....|.+|..+-.++.
T Consensus 207 ~~~~~----~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~------------------ 262 (372)
T PF12231_consen 207 GPNKE----LSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG------------------ 262 (372)
T ss_pred ChhHH----HHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC------------------
Confidence 33222 2233334444333332 5777777777777765 23445666655532221
Q ss_pred hhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC--c-hhchHHHHHHHHHHHHhh-
Q 001675 704 NYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ--V-DHWVEPYLRITVERLRRA- 779 (1033)
Q Consensus 704 ~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~--~-~~~l~~il~~~~~~l~~~- 779 (1033)
...+-.| +++...+.+.++.+++. +...+..|...-..++-..... . ...+.-+..-+...+...
T Consensus 263 ------~~~~~~w---~~~n~wL~v~e~cFn~~--d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~ 331 (372)
T PF12231_consen 263 ------SSRLDSW---EHLNEWLKVPEKCFNSS--DPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREK 331 (372)
T ss_pred ------Cchhhcc---HhHhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccc
Confidence 0112233 67777888888887654 3333455555544444432211 1 122222222222222222
Q ss_pred --hhh-HHHHHHHHHHHHHhhhC
Q 001675 780 --EKS-YLKCLLVQVIADALYYN 799 (1033)
Q Consensus 780 --~~~-~~~~~~l~v~~~~~~~~ 799 (1033)
+.+ .++..++.-++..++|.
T Consensus 332 ~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 332 SSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred cccccHHHHHHHHHHHhchHHHH
Confidence 222 67777788788877663
No 193
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=43.60 E-value=3.5e+02 Score=28.36 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhChHHHHHHHHhhCchHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccc
Q 001675 779 AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT 856 (1033)
Q Consensus 779 ~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~ 856 (1033)
....+++..-++||+.++-.+-+.++.+|-+.++.+..++ .+ .+.+...|++.+.=+-++|...
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr----im----------e~GSelSKtvA~fIlqKIlldD 199 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR----IM----------ESGSELSKTVATFILQKILLDD 199 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH----HH----------hcccHHHHHHHHHHHHHHhhcc
Confidence 4477899999999999999888889999887665443333 22 3445666777777777777654
No 194
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=41.66 E-value=5.5e+02 Score=31.75 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=65.7
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHH
Q 001675 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALG 581 (1033)
Q Consensus 502 ~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~ 581 (1033)
+.-++..|.+++.-|...+-..+...+.... + +.++..|+..--+.++..+..+|-.+ + .|+...
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~--~------~~l~~~l~~y~~~t~s~~~~~il~~~----~---~P~~K~ 70 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDR--E------PWLVNGLVDYYLSTNSQRALEILVGV----Q---EPHDKH 70 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccc--h------HHHHHHHHHHHhhcCcHHHHHHHHhc----C---CccHHH
Confidence 3445666777777787777777777776532 1 24566666554444544444444322 1 355556
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCch-hHHHHHHH
Q 001675 582 LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLE 660 (1033)
Q Consensus 582 l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~-~~~~~~l~ 660 (1033)
++..|-..|.+ + -.+..++..++.+|+. ..+.++.-....+++-+-.||..|.. -.+..++-
T Consensus 71 ~~~~l~~~~~~--------~-------~~Rl~~L~Ll~~~v~~--qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~ 133 (668)
T PF04388_consen 71 LFDKLNDYFVK--------P-------SYRLQALTLLGHFVRS--QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALL 133 (668)
T ss_pred HHHHHHHHHcC--------c-------hhHHHHHHHHHHHHhc--CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHH
Confidence 66655543211 1 1222344444444443 22333333344555555555554433 23344444
Q ss_pred HHHHhh
Q 001675 661 IVSYMT 666 (1033)
Q Consensus 661 ll~~l~ 666 (1033)
++..++
T Consensus 134 ~LimlL 139 (668)
T PF04388_consen 134 VLIMLL 139 (668)
T ss_pred HHHHHh
Confidence 444444
No 195
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=41.20 E-value=5.2e+02 Score=28.37 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 001675 101 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHN 134 (1033)
Q Consensus 101 ~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~ 134 (1033)
+++-|+-.+.+-..+...|..++|.+++..+..+
T Consensus 2 d~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL 35 (307)
T PF04118_consen 2 DSKYKKYNAEVEKALKSFESSSEWADYISFLGKL 35 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3455666677777777888888999866555443
No 196
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=40.63 E-value=6.9e+02 Score=29.65 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhC----CCCh---HHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcC
Q 001675 6 LALILQGALSPNPEERKAAEHSLNQFQY----TPQH---LVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (1033)
Q Consensus 6 L~~~L~~tls~d~~~r~~AE~~L~~~~~----~p~f---~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~ 78 (1033)
|.-+|....||+..+|+..-+-|+++-+ .|.. +..|++.+.+++.+.-+|.++.+|++..+.|
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R---------- 94 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR---------- 94 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc----------
Confidence 4556667779999999999888887654 3543 5688888888776789999999999988855
Q ss_pred CCCChhHHHHHHHHHHHHHhcC
Q 001675 79 QKISQVDKDMVRDHILVFVAQV 100 (1033)
Q Consensus 79 ~~l~~~~k~~ir~~Ll~~l~~~ 100 (1033)
++.++|..+=-.+++++..-
T Consensus 95 --l~~~e~~~llP~ll~~is~~ 114 (501)
T PF13001_consen 95 --LDDEERRELLPSLLKGISKK 114 (501)
T ss_pred --CCHHHHHHHHHHHHHhhccC
Confidence 88999999999999998643
No 197
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=40.20 E-value=4.8e+02 Score=33.64 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=79.6
Q ss_pred chHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHh
Q 001675 720 DYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR---AEKSYLKCLLVQVIADAL 796 (1033)
Q Consensus 720 ~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~---~~~~~~~~~~l~v~~~~~ 796 (1033)
+.+..+++.+.+++......+ .+..+++.+-..+.+. +|++.++..+.. ...-.+...++.++..++
T Consensus 545 ~~v~~ii~Ll~~l~~~~~~~~----~~~~iL~~~S~~l~~~------DIisvI~~ile~~L~~~~v~ll~scl~fL~aL~ 614 (931)
T PF10487_consen 545 ERVAEIIDLLASLLSSDNSIE----DSKEILEEASAYLDHS------DIISVIFDILERSLQSRNVELLTSCLRFLTALL 614 (931)
T ss_pred HHHHHHHHHHHHHHccCcchh----HHHHHHHHHhhccccC------cHHHHHHHHHHHHcccCChHHHHHHHHHHHHHh
Confidence 567777888888885432111 2445555544444332 666767666654 223446667788888888
Q ss_pred hhChHHHHHHHHhhCch-----HHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccc
Q 001675 797 YYNSSLTLSILHKLGVA-----TEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT 856 (1033)
Q Consensus 797 ~~~~~~~l~~L~~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~ 856 (1033)
-..|..+-..|.+.+++ .++....+...+ ...|.|+--++++-|.+.|-.+
T Consensus 615 p~~p~rVW~~L~rS~LL~~~g~~G~~s~ilgs~E---------~~~G~Y~ftls~lkL~~~Lv~~ 670 (931)
T PF10487_consen 615 PIFPGRVWSYLSRSSLLGSDGKGGLASVILGSIE---------MVSGRYDFTLSLLKLFSALVDD 670 (931)
T ss_pred ccChHHHHHHHhhCcCcccCCccchHHHhhhhhh---------ccCCcchHHHHHHHHHHHHHHH
Confidence 88899999999887543 446677676777 8899999999999998877543
No 198
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=40.19 E-value=1.7e+02 Score=30.90 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=86.1
Q ss_pred HHHHHHHhhccccC-CCCCC--CchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHh----hcccCC--C---Ccccc
Q 001675 409 FIQFIVGIFKRYDE-TPVEY--KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH----VFPEFS--S---PVGHL 476 (1033)
Q Consensus 409 l~~~i~~~l~~~~~-~~~~~--~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~----v~p~l~--~---~~~~l 476 (1033)
+..+++++++-|.. +|... ..-..--.|+.++.++|.+-. .+ ..|+..+ +.|.|+ + +.-+|
T Consensus 40 i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpe----tr---~~Fl~a~iplyLyPfL~tt~k~r~~E~L 112 (262)
T PF04078_consen 40 IAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPE----TR---MPFLKAHIPLYLYPFLNTTSKTRPFEYL 112 (262)
T ss_dssp HHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TT----TH---HHHHHTTGGGGGHHHHH----SHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChH----HH---HHHHHcCchhhehhhhhccccccccchh
Confidence 34455677777743 12110 112445556667777776421 11 1333333 334443 1 24579
Q ss_pred hHHHHHHHHhhhccccCChhH-----HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHH
Q 001675 477 RAKAAWVAGQYAHINFSDQNN-----FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 551 (1033)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~-----~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~l 551 (1033)
|-.++-++|...+.. +++. -..++|..+..|...+...+.-|..-+++++.+.. +|--.
T Consensus 113 RLtsLGVIgaLvK~d--~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~--------------GL~yi 176 (262)
T PF04078_consen 113 RLTSLGVIGALVKTD--DPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDV--------------GLNYI 176 (262)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHH--------------HHHHH
T ss_pred hHhHHHHHHHHHcCC--cHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchh--------------HHHHH
Confidence 999999999887632 3321 23456777777765566677778888887776532 11111
Q ss_pred hhhhc-hhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh
Q 001675 552 MNEVE-NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN 595 (1033)
Q Consensus 552 l~~~~-~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~ 595 (1033)
-...+ .-.+..++..+|....++- .+.++.+...++.|+..
T Consensus 177 C~t~eRf~av~~vL~~mV~~l~~~p---S~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 177 CQTAERFFAVAMVLNKMVEQLVKQP---SPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHHHHccCC---ChhHHHHHHHHHHHHcc
Confidence 11111 1235566777776654433 44788888888888754
No 199
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.01 E-value=7.6e+02 Score=29.96 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCc----chhHHHH
Q 001675 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP----YKSELER 459 (1033)
Q Consensus 384 ~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~----~~~~l~~ 459 (1033)
..||.. ..++..|.+-.|.-++..+ ..+...|.+ +.+..|-+.+-+.+.+...+.+... |+..+..
T Consensus 277 ~Gpk~i-slFl~kls~l~p~i~lrq~-~~~~~LLds--------es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~ 346 (1128)
T COG5098 277 SGPKDI-SLFLNKLSELSPGIMLRQY-EHFDELLDS--------ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLND 346 (1128)
T ss_pred cChHHH-HHHHHHHhhcCchHHHHHH-HHHHHHhcc--------cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHH
Confidence 445554 4577777776665444322 223344432 3678888888888888777654331 2223322
Q ss_pred HHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 460 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 460 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
+...+.--|.+.+|+.|..|+.++.+..+...+-+..-..+...+..+++|.+.+||--|..-+..++-..
T Consensus 347 -Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 347 -LVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred -HHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 23334445678899999999999999866433333456888999999999999999999999988887654
No 200
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.63 E-value=3.1e+02 Score=33.37 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhc
Q 001675 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d-~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
+.+-=+|+.|...+|- +.|++++.+..++. .|.. -++-||..||.||.-.|...
T Consensus 566 D~nDDVrRaAVialGF---Vl~~dp~~~~s~V~----lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGF---VLFRDPEQLPSTVS----LLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred ccchHHHHHHHHHhee---eEecChhhchHHHH----HHhhhcChhhhhhHHHHHhhhhcCC
Confidence 3444466666666654 34566655444443 3432 35568888888888777654
No 201
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.57 E-value=6.7e+02 Score=29.16 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhh-hchhhHHHHHHHH---HHhh
Q 001675 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE-VENEDLVFTLETI---VDKF 571 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~-~~~~~l~~~l~~i---v~~~ 571 (1033)
..+..++..+.+-..||+-.+|-.||..|.+..... +...+.|.+.++..+..-+-+ ...+-...+|.++ .+..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~--P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA--PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC--cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 567888988888889999899999999999998874 677777777777776655433 3333344444444 3333
Q ss_pred -cccccccHHHHHHHHHH
Q 001675 572 -GEEMAPYALGLCQNLAA 588 (1033)
Q Consensus 572 -~~~i~p~~~~l~~~L~~ 588 (1033)
...+.||...+.-.+.+
T Consensus 332 ~~~~l~~~~l~ialrlR~ 349 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRT 349 (533)
T ss_pred hhcchhhhchhHHHHHHH
Confidence 46788888888877775
No 202
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=39.34 E-value=88 Score=22.25 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=20.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHH
Q 001675 92 HILVFVAQVPPLLRVQLGECLKTIIH 117 (1033)
Q Consensus 92 ~Ll~~l~~~~~~ir~~la~~i~~Ia~ 117 (1033)
.|+++|.+++..++...+-+++.|++
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45566677889999999999988874
No 203
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=39.19 E-value=6.3e+02 Score=28.74 Aligned_cols=120 Identities=11% Similarity=0.076 Sum_probs=67.7
Q ss_pred HHHHHHHHHHH-hcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcc
Q 001675 389 ASMDFVSELVR-KRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP 467 (1033)
Q Consensus 389 aa~~ll~~L~~-~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p 467 (1033)
++..++..|.. ....++...++.++..+|++. +.+.. +++-.+....+.. .++|+ +
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d----------~sr~~---lf~~~a~~~k~~~-----~~~fl-----~ 121 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED----------RSRVD---LFHDYAHKLKRTE-----WLSFL-----N 121 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC----------chHHH---HHHHHHHhhhccc-----hHHHH-----H
Confidence 33444444444 455678888999999999764 22332 2333333332221 22332 3
Q ss_pred cCCCCcccchHHHHHHHHhhhcc---ccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcc
Q 001675 468 EFSSPVGHLRAKAAWVAGQYAHI---NFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACR 532 (1033)
Q Consensus 468 ~l~~~~~~lr~ra~~~l~~~~~~---~~~~~~~~~~~~~~l~~~L~d-~~~~Vr~~Aa~al~~~~~~~~ 532 (1033)
.+..+++++-.-+.|++++++.+ .... ..+.-....+-..|++ .+.--+..|+.+|+.++..++
T Consensus 122 ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e 189 (442)
T KOG2759|consen 122 LLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE 189 (442)
T ss_pred HHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc
Confidence 44567788888777887776543 2222 1223333444444554 344466789999999998865
No 204
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=38.90 E-value=33 Score=24.54 Aligned_cols=28 Identities=14% Similarity=0.493 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHHHHhhChHHHHHH
Q 001675 966 IDEVDPFVFFVDTIKVMQASDPLRFQNL 993 (1033)
Q Consensus 966 l~~vd~~~~~~~~l~~~~~~~~~~~~~l 993 (1033)
+..||++.|+..+|..+.+.....+..+
T Consensus 8 ~ngv~P~~yL~~vL~~i~~~~~~~~~~L 35 (39)
T PF13817_consen 8 LNGVNPYAYLTDVLERIPNHPANDIDEL 35 (39)
T ss_pred HcCCCHHHHHHHHHHHHccCCHHHHHHh
Confidence 5678999999999999988554555443
No 205
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.56 E-value=4.8e+02 Score=30.66 Aligned_cols=142 Identities=13% Similarity=0.208 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhh---hchhhHHHHHHHHHHh----
Q 001675 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDK---- 570 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~---~~~~~l~~~l~~iv~~---- 570 (1033)
++-+|.-+.+.+.+.+.+.|-.|-.+|+ .+ .-+.+++|-++..+..-... ..+-.+...+..+++.
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~---TD----sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLE---TD----SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhc---cC----ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 3566666666666677777766665555 23 23333333333332222211 0111222222223333
Q ss_pred hcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccC
Q 001675 571 FGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD 650 (1033)
Q Consensus 571 ~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~ 650 (1033)
-.=.+.||..+|+..+..++.. ++-...|..|+ ....+-...+.+..|+ +..+..|..+..++..++..++..+
T Consensus 278 p~i~lepYlh~L~PSvlTCvVs--k~l~~~p~~dn-hwaLRDfAA~ll~~i~---k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVS--KNLCLRPELDN-HWALRDFAARLLAQIC---KNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhh--hhccCCccccc-hHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 2334889999999988876422 22222332222 2223333344444443 3445667778888888888888655
Q ss_pred ch
Q 001675 651 GQ 652 (1033)
Q Consensus 651 ~~ 652 (1033)
..
T Consensus 352 ~~ 353 (576)
T KOG2549|consen 352 KK 353 (576)
T ss_pred CC
Confidence 43
No 206
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=38.52 E-value=56 Score=24.37 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 001675 85 DKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHAD 119 (1033)
Q Consensus 85 ~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d 119 (1033)
+..++|+-+++.|...+.. |.++..+|+.+.+.+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4568999999999776655 889988888887654
No 207
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=37.13 E-value=5.4e+02 Score=27.36 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHHHHhhhChHHHHHHHHhhCchHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhccc
Q 001675 780 EKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT 856 (1033)
Q Consensus 780 ~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~~ 856 (1033)
...++|...++||+.++-.+-..++++|-+.. ++-.++..+. +.+..-|.+++.=+-|+|...
T Consensus 108 ~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tE----iiplcLr~me----------~GselSKtvAtfIlqKIL~dd 170 (262)
T PF04078_consen 108 PFEYLRLTSLGVIGALVKTDDPEVISFLLQTE----IIPLCLRIME----------FGSELSKTVATFILQKILLDD 170 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTT----HHHHHHHHHH----------HS-HHHHHHHHHHHHHHHHSH
T ss_pred ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhc----hHHHHHHHHH----------hccHHHHHHHHHHHHHHHcch
Confidence 46789999999999999888888999887643 4444455554 345667777777777888654
No 208
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=36.69 E-value=2.7e+02 Score=34.99 Aligned_cols=134 Identities=10% Similarity=0.155 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHH
Q 001675 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (1033)
Q Consensus 384 ~s~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~ 463 (1033)
..+-.-|...|..++...+.............+|.... ...-..+|+++-++-.++... .+..+ ..
T Consensus 309 ~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lk-----ekk~~l~d~l~~~~d~~~ns~--------~l~~~-~~ 374 (815)
T KOG1820|consen 309 INVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLK-----EKKSELRDALLKALDAILNST--------PLSKM-SE 374 (815)
T ss_pred hhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhh-----hccHHHHHHHHHHHHHHHhcc--------cHHHH-HH
Confidence 45666677888888887665433322222222222211 124567888887777766621 12222 34
Q ss_pred hhcccCCCCcccchHHHHHHHHhhhc-cccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 464 HVFPEFSSPVGHLRAKAAWVAGQYAH-INFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 464 ~v~p~l~~~~~~lr~ra~~~l~~~~~-~~~~~--~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
.|+-.+.+.+|-.|..+.-++++.-. ..... ......+.+.++.+.+|.+..||..|..++..+....
T Consensus 375 ~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 375 AILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 45555678899999997766666533 22111 2568999999999999999999999999999888763
No 209
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.99 E-value=1.7e+03 Score=32.96 Aligned_cols=256 Identities=17% Similarity=0.174 Sum_probs=117.7
Q ss_pred CchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHH--hhcccCCCCcccchHHHHHHHHhh------hccccCCh--hH
Q 001675 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ--HVFPEFSSPVGHLRAKAAWVAGQY------AHINFSDQ--NN 497 (1033)
Q Consensus 428 ~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~--~v~p~l~~~~~~lr~ra~~~l~~~------~~~~~~~~--~~ 497 (1033)
+.|..|.|....|+++.+.+.... ..+....++.. +++-.+.+..+-...+-+..+..+ .+..+... ..
T Consensus 1045 ~~wy~k~gG~~gI~~l~~~~~~~~-l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~ 1123 (3550)
T KOG0889|consen 1045 STWYAKDGGVNGIKCLIESMPSLW-LLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKS 1123 (3550)
T ss_pred HhHHHHcCCCceeeeehhhchHHH-HHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 379999999999999988765211 11111111111 122233332233223333222221 11111111 23
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--ccchhhcchHHHHHHHHHH-hhhhchhhHHHHHHHHHHh--hc
Q 001675 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDEFFKL-MNEVENEDLVFTLETIVDK--FG 572 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~--~~~~l~p~l~~il~~L~~l-l~~~~~~~l~~~l~~iv~~--~~ 572 (1033)
...++..++..|.+++..||..+..+|..+.+... ..+.+.|+-+-++..++.- +...........++.+..- .+
T Consensus 1124 ~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1124 AMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC
Confidence 55666677777888988999999999999987752 1222223222221111110 0111111233334433322 23
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhcc---------CCCCCCChhHHHHHHHHHHHHHHHHhccC-ChHHHHHHHhhHHHH
Q 001675 573 EEMAPYALGLCQNLAAAFWRCMNTAE---------ADEDADDPGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPI 642 (1033)
Q Consensus 573 ~~i~p~~~~l~~~L~~~~~~~~~~~~---------~d~~~~~~~~~~~~~~l~~i~~li~~~~~-~~~~~~~l~~~~~p~ 642 (1033)
...--+..++...... +..+....+ .+......-...+..|++.+.+....... .|. ...+.+.++-+
T Consensus 1204 p~~f~~~~~l~~l~~~-~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~-~~~~r~kii~v 1281 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRF-LIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQ-HAELREKIIAV 1281 (3550)
T ss_pred CcccCchHHHHHHHHH-HHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchh-hhhhhhHHHHH
Confidence 3333344444332111 111111000 00000000011234556665555555433 233 23344555555
Q ss_pred HHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhHHH--HHHHHHHH
Q 001675 643 MRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWS--LWPLMMEA 686 (1033)
Q Consensus 643 i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~--l~~~l~~~ 686 (1033)
+-..+..+..++.+-+...+...+.....++-+.|+ +-|.++++
T Consensus 1282 ~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1282 FFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 555666777788888888777776554555556553 33555444
No 210
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.71 E-value=9.7e+02 Score=29.94 Aligned_cols=162 Identities=16% Similarity=0.181 Sum_probs=79.8
Q ss_pred HhhHHHHHHHHcccCc-hhHHHHHHHHHHHhhhcCCCCCHhHHH--HHHHHHHHhhh-hHhhhhhhhhhhhhhhhccCcc
Q 001675 636 EPTLLPIMRRMLTTDG-QEVFEEVLEIVSYMTFFSPTISLEMWS--LWPLMMEALAD-WAIDFFPNILVPLDNYISRGTA 711 (1033)
Q Consensus 636 ~~~~~p~i~~il~~~~-~~~~~~~l~ll~~l~~~~~~isp~l~~--l~~~l~~~~~~-~~~~~~~~~~~~L~~~i~~~~~ 711 (1033)
...++|++..+|+.+. .+++--++.-++.+....|.-+..+.. ..|.++.-+.. ...|.-+..+..|+-.-+..+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 3678899988887654 477777888777777665533333333 45555444321 1234445556666544344454
Q ss_pred cccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhh--HHHHHHH
Q 001675 712 HFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKS--YLKCLLV 789 (1033)
Q Consensus 712 ~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~--~~~~~~l 789 (1033)
.+++. ..+..++..+.-. + -..+..|+.+...+-.+++..-..++-..+..+.++|+....+ ..+...+
T Consensus 289 AiL~A---G~l~a~LsylDFF-S-----i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 289 AILQA---GALSAVLSYLDFF-S-----IHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICL 359 (1051)
T ss_pred HHHhc---ccHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 55542 3444444433211 1 1101224444444444444332344555556666666643322 2333333
Q ss_pred HHHHHHhhhChHHHHHH
Q 001675 790 QVIADALYYNSSLTLSI 806 (1033)
Q Consensus 790 ~v~~~~~~~~~~~~l~~ 806 (1033)
.-++-.+..+|+.+-++
T Consensus 360 ~ri~d~f~h~~~kLdql 376 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQL 376 (1051)
T ss_pred HHHHHhcccChHHHHHH
Confidence 33444444556544433
No 211
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.17 E-value=5.9e+02 Score=27.24 Aligned_cols=143 Identities=18% Similarity=0.226 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCCCC----CchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcc
Q 001675 498 FRKALHSVVSGLRDPE----LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 573 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~----~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~ 573 (1033)
+-..+|.+++.+.++. ..-....|.+|...++..+ .+.+..++..+.+ +++ .+....+..++..+.+
T Consensus 109 ~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-----~~~La~il~~ya~--~~f--r~~~dfl~~v~~~l~~ 179 (262)
T PF14225_consen 109 LLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-----LPNLARILSSYAK--GRF--RDKDDFLSQVVSYLRE 179 (262)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-----CccHHHHHHHHHh--cCC--CCHHHHHHHHHHHHHH
Confidence 4556777777777665 1345577888888886532 2345555555432 122 3334444444544444
Q ss_pred cccc-cHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCch
Q 001675 574 EMAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 652 (1033)
Q Consensus 574 ~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~ 652 (1033)
...| |..+++..|.. +..++. ......+++.+..++..+.-.... -.+.+.|+++..- .
T Consensus 180 ~f~P~~~~~~l~~Ll~----lL~n~~---------~w~~~~~L~iL~~ll~~~d~~~~~---~~dlispllrlL~----t 239 (262)
T PF14225_consen 180 AFFPDHEFQILTFLLG----LLENGP---------PWLRRKTLQILKVLLPHVDMRSPH---GADLISPLLRLLQ----T 239 (262)
T ss_pred HhCchhHHHHHHHHHH----HHhCCc---------HHHHHHHHHHHHHHhccccCCCCc---chHHHHHHHHHhC----C
Confidence 4443 44455555554 444321 235567888899998887532211 1234455555443 3
Q ss_pred hHHHHHHHHHHHhhhcC
Q 001675 653 EVFEEVLEIVSYMTFFS 669 (1033)
Q Consensus 653 ~~~~~~l~ll~~l~~~~ 669 (1033)
++..+|++++...+..+
T Consensus 240 ~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 240 DLWMEALEVLDEIVTRS 256 (262)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 68889999998887654
No 212
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=34.94 E-value=3.9e+02 Score=30.11 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=62.8
Q ss_pred CcccchHHHHHHHHhhhccc-----cCChhHHHHHHHHHHhcC--CCCCCchHHHHHHHHHHHHHhcc------ccchhh
Q 001675 472 PVGHLRAKAAWVAGQYAHIN-----FSDQNNFRKALHSVVSGL--RDPELPVRVDSVFALRSFVEACR------DLNEIR 538 (1033)
Q Consensus 472 ~~~~lr~ra~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~L--~d~~~~Vr~~Aa~al~~~~~~~~------~~~~l~ 538 (1033)
++|.+ +.++|++-++-+-. -.....+..+.+.++.|+ .+..++||..|...++.+++.+. .++.+.
T Consensus 224 p~p~l-~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~ 302 (373)
T PF14911_consen 224 PPPRL-ASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLT 302 (373)
T ss_pred CCCcH-HHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHH
Confidence 34433 55778887765431 011134677888888885 36678899999999999999875 222233
Q ss_pred cchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHH
Q 001675 539 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 587 (1033)
Q Consensus 539 p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 587 (1033)
+.+...++..+. .....+...|+++...-++-+.+..+.+-+.+.
T Consensus 303 s~lrsfvqk~l~----~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 303 SVLRSFVQKYLA----HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLK 347 (373)
T ss_pred HHHHHHHHHHhh----hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 333333333221 122346667777665444444444444444443
No 213
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=34.53 E-value=1e+02 Score=25.68 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=32.2
Q ss_pred hHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccC-CCCcccchHHHHHHHHhhhc
Q 001675 432 QKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF-SSPVGHLRAKAAWVAGQYAH 489 (1033)
Q Consensus 432 ~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l-~~~~~~lr~ra~~~l~~~~~ 489 (1033)
+.-++++++|.++..-... .+..+ .++ ...++... +++..-+|+.|++++|-++.
T Consensus 3 ~lKaaLWaighIgss~~G~-~lL~~-~~i-v~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI-QLLDE-SDI-VEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHH-HHHhh-cCH-HHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 5679999999988642110 00000 011 11122222 35677899999999999876
No 214
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=34.43 E-value=53 Score=21.49 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=11.5
Q ss_pred cchHHHHHHHHhhh
Q 001675 475 HLRAKAAWVAGQYA 488 (1033)
Q Consensus 475 ~lr~ra~~~l~~~~ 488 (1033)
.+|.+|.+.+|++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 57899999998874
No 215
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=34.30 E-value=7.2e+02 Score=27.99 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=40.7
Q ss_pred chHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001675 476 LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 476 lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
-++-|..++++|-.+ | |+..-..+.+-+.+..|.++.||..|..-|-.||..
T Consensus 40 ~k~lasq~ip~~fk~-f--p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKH-F--PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHhh-C--chhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 355677788887553 2 245677788888888999999999999999999976
No 216
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=33.66 E-value=1.3e+02 Score=26.19 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---------hHHHHHHHHHHHHH
Q 001675 102 PLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---------QVYGALFVLRILSR 152 (1033)
Q Consensus 102 ~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---------~~~~~L~~L~~i~k 152 (1033)
-.+|...|.+++.|++. |-...|+|-+.+...+... ..+||+..|.++-.
T Consensus 20 ~~LRd~AA~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 20 WALRDFAASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred HHHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999865 6667777777776666433 46899998888743
No 217
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=33.61 E-value=35 Score=31.35 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=41.5
Q ss_pred CcccchHHHHHHHHhhhccccCChhHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001675 472 PVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 472 ~~~~lr~ra~~~l~~~~~~~~~~~~~~--~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
..|...+-||.=+|+|+.........+ ..+=..++.+|.+++.-||..|-.|++.++-+
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 456777889999999987531111111 22346788899999999999999999998753
No 218
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=32.51 E-value=7.9e+02 Score=29.70 Aligned_cols=24 Identities=4% Similarity=0.142 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001675 865 LGRVFRATLDLLVAYKEQVAEAAK 888 (1033)
Q Consensus 865 ~~~~~~~~~~ll~~l~~~~~~~~~ 888 (1033)
-..++..+++-|..+.-+++-..+
T Consensus 199 ~~~Il~lIi~rLi~iDVeiq~~~d 222 (563)
T PF05327_consen 199 RSDILSLIIERLIKIDVEIQIELD 222 (563)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCcc
Confidence 345666666666666555554443
No 219
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=31.68 E-value=1.4e+02 Score=31.46 Aligned_cols=50 Identities=24% Similarity=0.160 Sum_probs=39.6
Q ss_pred CCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHH
Q 001675 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 529 (1033)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~ 529 (1033)
..||.+|.-|...+|..++ ..+++.+...++|++.+||..+..||.-.-.
T Consensus 231 ~E~pMVRhEaAeALGaIa~---------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD---------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hcchHHHHHHHHHHHhhcC---------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3689999999999987764 4456677778899999999999888886543
No 220
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=31.63 E-value=4.3e+02 Score=24.82 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 001675 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~ 532 (1033)
.....++.++...|.++++.|+..|...+..++.+|.
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg 69 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG 69 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC
Confidence 3457788888899999999999999999999999985
No 221
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.25 E-value=1.4e+03 Score=30.47 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=41.0
Q ss_pred cCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhChHH
Q 001675 743 IEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSL 802 (1033)
Q Consensus 743 ~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~~~ 802 (1033)
+.-|.+++..|+......++.--++++.+-+.|+.. ....++...+...-.|+..+|..
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D-~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFND-ISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhcc-CChhhhhhHHHHhHHHHhcCchh
Confidence 566778887777765544445556777777777653 34567777888888888888764
No 222
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=31.25 E-value=2e+02 Score=28.95 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=53.1
Q ss_pred HHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 462 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
.+.|+....++.+-+|..|+.+++.....-+-+| .+++|.++....|++..+|..|...+..+.+..
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3445555557788899999999988766555566 668899998888999999999999998887763
No 223
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.55 E-value=2.1e+03 Score=32.24 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=54.0
Q ss_pred HHHhhhccccCChh--HHHHHHHHHHhcCCCCCCc-hHHHHHH----HHHHHHHhccccchhhcchHHHHHHHHHHhhhh
Q 001675 483 VAGQYAHINFSDQN--NFRKALHSVVSGLRDPELP-VRVDSVF----ALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (1033)
Q Consensus 483 ~l~~~~~~~~~~~~--~~~~~~~~l~~~L~d~~~~-Vr~~Aa~----al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 555 (1033)
=++.+-+..|.+++ .++.++|.+++.+.+..+. .+..+.. ++-.++..+...+.++||...++..++.++..-
T Consensus 30 E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e~~~~~~~~~~~~~~~vl~~d 109 (3550)
T KOG0889|consen 30 EIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNEVFKPFSQELLKVLMRVLTND 109 (3550)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333333444442 3678888888888654333 2222222 222334444467899999999999999999754
Q ss_pred chhhHHHHHHHHHHhhc
Q 001675 556 ENEDLVFTLETIVDKFG 572 (1033)
Q Consensus 556 ~~~~l~~~l~~iv~~~~ 572 (1033)
+.|...-+|+.++..++
T Consensus 110 Neen~~l~lkii~~l~r 126 (3550)
T KOG0889|consen 110 NEENAILCLKIITDLFR 126 (3550)
T ss_pred cchhhhhHHHHHHHHHH
Confidence 44455666766665543
No 224
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=29.87 E-value=4.2e+02 Score=27.14 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=20.2
Q ss_pred CCCCCchHHHHHHHHHHHHhhChHHHHHHhcCC-CHHHHHHHHHHHH
Q 001675 965 PIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTL-EFQYQALANGVAQ 1010 (1033)
Q Consensus 965 pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l-~~~~~~~l~~~~~ 1010 (1033)
|+|==|+|. |-=.|+.|..+ ++ |+.++ +|+.++.+-..||
T Consensus 121 PVDINDPYD-lGLLLRhLRHH-SN----LLAnIgdP~VreqVLsAMq 161 (238)
T PF02084_consen 121 PVDINDPYD-LGLLLRHLRHH-SN----LLANIGDPEVREQVLSAMQ 161 (238)
T ss_pred ccccCChhh-HHHHHHHHHHH-HH----HHhhcCCHHHHHHHHHHHh
Confidence 443225553 33344555432 33 33333 8888887666655
No 225
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=29.31 E-value=2.1e+02 Score=29.23 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHH-HHHHHHHHHhhhcCCcchhHHHHHHHHh
Q 001675 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGA-LLAIGALCDKLKQTEPYKSELERMLVQH 464 (1033)
Q Consensus 386 ~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaa-l~~lg~la~~l~~~~~~~~~l~~~l~~~ 464 (1033)
.|..|..++....... ....+..+...+.. ..||-..|.. -.++|.+...- +. +. ..
T Consensus 67 ~~~la~~il~~~~~~~----~~~~~~~~~~~~~~-------~~~W~~~D~~~~~~~~~~~~~~---~~----~~----~~ 124 (213)
T PF08713_consen 67 ERYLALLILDKRRKKL----TEEDLELLEKWLPD-------IDNWATCDSLCSKLLGPLLKKH---PE----AL----EL 124 (213)
T ss_dssp HHHHHHHHHHHCGGG------HHHHHHHHHCCCC-------CCCHHHHHHHTHHHHHHHHHHH---GG----HH----HH
T ss_pred HHHHHHHHhHHHhhhh----hHHHHHHHHHHhcc-------CCcchhhhHHHHHHHHHHHHhh---HH----HH----HH
Confidence 4666665554432222 22234455555542 2489998888 45556543321 11 11 22
Q ss_pred hcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHH
Q 001675 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (1033)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~ 543 (1033)
+..-..+++++.|+.++.++-.+... .....++..+...+.|++.-||-..+.+|..+.... ++.+.+|+..
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~-----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~--~~~v~~~l~~ 196 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRK-----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD--PDEVLEFLQK 196 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGG-----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT---HHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC--HHHHHHHHHH
Confidence 23334578889888887766444332 456888888888999999999999999999887663 4555555544
No 226
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.23 E-value=88 Score=34.26 Aligned_cols=87 Identities=17% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCcccchHHHHHHHHhhhccc-cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHH
Q 001675 471 SPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 549 (1033)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~-~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~ 549 (1033)
+.+-.+|+.+.-.+....... -+..-...--+|.+++.+.+.++-||++++.||.++.-+...+..+..--|.++..|.
T Consensus 178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv 257 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALV 257 (550)
T ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHH
Confidence 455566666665554443211 0000112334688899999999999999999999987655445566666678888999
Q ss_pred HHhhhhch
Q 001675 550 KLMNEVEN 557 (1033)
Q Consensus 550 ~ll~~~~~ 557 (1033)
.+|...+.
T Consensus 258 ~Lmd~~s~ 265 (550)
T KOG4224|consen 258 DLMDDGSD 265 (550)
T ss_pred HHHhCCCh
Confidence 99976543
No 227
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.87 E-value=3.8e+02 Score=32.51 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=52.4
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCc-----chhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEP-----YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALH 503 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~-----~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~ 503 (1033)
....+.+|+.++|++.+......+ ....+.+++...+-...+.....-+.-++..||..+. ...+.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~---------~~~i~ 480 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH---------PSSIK 480 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC---------hhHHH
Confidence 568899999999999986443221 1123444444443322222222223445566665442 12222
Q ss_pred HHHhcC-CCC--CCchHHHHHHHHHHHHHhc
Q 001675 504 SVVSGL-RDP--ELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 504 ~l~~~L-~d~--~~~Vr~~Aa~al~~~~~~~ 531 (1033)
.+...+ .+. ...+|..|+.||+++...+
T Consensus 481 ~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 481 VLEPYLEGAEPLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 233333 233 4559999999999887654
No 228
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=28.82 E-value=5.5e+02 Score=27.44 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=72.2
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 001675 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 535 (1033)
Q Consensus 456 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~ 535 (1033)
++...+..+.-..+++..-|++.-+-.+-..| | |++-.+++..++..|.+...-+|...-..|+.++......
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f----~--P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~- 222 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAF----F--PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR- 222 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----C--chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-
Confidence 45555666555555544555554433333222 1 1233566777777777766679999999999999875422
Q ss_pred hhhcchHHHHHHHHHHhhhhchhhHHHHHHHHHHhhcc
Q 001675 536 EIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 573 (1033)
Q Consensus 536 ~l~p~l~~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~ 573 (1033)
+|+.++++.-++++++..-..+...+++.++...+.
T Consensus 223 --~~~~~dlispllrlL~t~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 223 --SPHGADLISPLLRLLQTDLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred --CCcchHHHHHHHHHhCCccHHHHHHHHHHHHhhccc
Confidence 568889999999999765556778888888876543
No 229
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.64 E-value=1.2e+03 Score=28.86 Aligned_cols=212 Identities=13% Similarity=0.137 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-c----cchhhcch--------HHHHHHHHHHhhhhchhhHHHHHH
Q 001675 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-D----LNEIRPIL--------PQLLDEFFKLMNEVENEDLVFTLE 565 (1033)
Q Consensus 499 ~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~-~----~~~l~p~l--------~~il~~L~~ll~~~~~~~l~~~l~ 565 (1033)
...+..+-.++.++...+|.+|.+.|..+....+ . .-.+.+.+ ..-+..|++.=++.+.+.++..+.
T Consensus 281 ~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~ 360 (865)
T KOG1078|consen 281 APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQIS 360 (865)
T ss_pred chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4455555556677888889999999888876532 0 01111111 112223333223333344566666
Q ss_pred HHHHhhcccccccHHHHHHHHHHHHHHHHhhc-------cCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhh
Q 001675 566 TIVDKFGEEMAPYALGLCQNLAAAFWRCMNTA-------EADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPT 638 (1033)
Q Consensus 566 ~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~-------~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~ 638 (1033)
+++..++++..-...+-+..|+..|-+.|... -.++. .--+...++++|.+++....... +..
T Consensus 361 ~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eG----g~e~K~aivd~Ii~iie~~pdsK------e~~ 430 (865)
T KOG1078|consen 361 SFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEG----GFEFKRAIVDAIIDIIEENPDSK------ERG 430 (865)
T ss_pred HHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhcc----CchHHHHHHHHHHHHHHhCcchh------hHH
Confidence 66666666655444443344443222221100 00110 11133466777777766542222 122
Q ss_pred HHHHHHHHcccCchhHHHHHHHHHHHhhhcCC-CCCHh--HHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCcccccc
Q 001675 639 LLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-TISLE--MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLT 715 (1033)
Q Consensus 639 ~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~-~isp~--l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~ 715 (1033)
+--+..+|. +.+|-..+..++..+-.-.| ...|. ...++..++=. + .-.-.+.+.+|..|- .
T Consensus 431 L~~LCefIE---Dce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLE--n--~ivRaaAv~alaKfg-~------- 495 (865)
T KOG1078|consen 431 LEHLCEFIE---DCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILE--N--AIVRAAAVSALAKFG-A------- 495 (865)
T ss_pred HHHHHHHHH---hccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhh--h--hhhHHHHHHHHHHHh-c-------
Confidence 222223332 22455666677766654332 22333 33444332211 0 111123344454443 1
Q ss_pred cCCcchHHHHHHHHHHHhcCC
Q 001675 716 CKEPDYQQSLWSMVSSIMADK 736 (1033)
Q Consensus 716 ~~~~~~~~~il~i~~~~l~~~ 736 (1033)
+++...+.|...+.+.+.+.
T Consensus 496 -~~~~l~~sI~vllkRc~~D~ 515 (865)
T KOG1078|consen 496 -QDVVLLPSILVLLKRCLNDS 515 (865)
T ss_pred -CCCCccccHHHHHHHHhcCc
Confidence 22344566777888888765
No 230
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.58 E-value=96 Score=38.17 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=58.3
Q ss_pred cchHHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHH
Q 001675 475 HLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 551 (1033)
Q Consensus 475 ~lr~ra~~~l~~~~~~~~~~--~~~~~~~~~~l~~~L~-d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~l 551 (1033)
--|-.++-++|.|....... .-.-..+++.++.||. |.+.+|-..|..+|-.++-. .+..+.||++.++..+..+
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~--ip~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH--IPSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHH
Confidence 35777888888886532100 0112356778888886 88999999999999999987 4688999999999999999
Q ss_pred hh
Q 001675 552 MN 553 (1033)
Q Consensus 552 l~ 553 (1033)
+.
T Consensus 161 ~~ 162 (668)
T PF04388_consen 161 LS 162 (668)
T ss_pred HH
Confidence 84
No 231
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=28.57 E-value=8e+02 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=18.4
Q ss_pred HHHHHhccccCCCChhhHHHHHHHHHHHHHHH
Q 001675 848 GLTSLLALTADQLPGEALGRVFRATLDLLVAY 879 (1033)
Q Consensus 848 al~~ll~~~~~~l~~~~~~~~~~~~~~ll~~l 879 (1033)
.+.++.... +.|-...|.-++..++++=.++
T Consensus 187 NlL~l~~Y~-P~L~~~Il~lIi~rLi~iDVei 217 (563)
T PF05327_consen 187 NLLRLTEYC-PELRSDILSLIIERLIKIDVEI 217 (563)
T ss_dssp HHHHHHCC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcch-HHHHHHHHHHHHHHHHHHhccc
Confidence 334444333 3444457888888888886644
No 232
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=28.50 E-value=1.3e+03 Score=29.14 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhh
Q 001675 496 NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~-~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 554 (1033)
-.++.++-.+++.+.++ ...-|.+-..++.+++... ++.+.|....+++.|.++-..
T Consensus 529 ~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~--~~~i~pl~~~il~~L~~lv~~ 586 (947)
T COG5657 529 GLLENLILLVLSLMASPSSLEEREFLLQLISRIIIID--PELIAPLGSEILQLLDNLVEI 586 (947)
T ss_pred ccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhC--HHhhhhhHHHHHHHHHHHHHH
Confidence 34677777778888765 4447888899999999874 688889888888888877654
No 233
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=28.23 E-value=76 Score=35.13 Aligned_cols=15 Identities=13% Similarity=-0.090 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHH
Q 001675 996 TLEFQYQALANGVAQ 1010 (1033)
Q Consensus 996 ~l~~~~~~~l~~~~~ 1010 (1033)
=||+++-..|+.+-.
T Consensus 189 ILT~eDF~kI~~lr~ 203 (324)
T PF05285_consen 189 ILTPEDFAKIRELRA 203 (324)
T ss_pred CCCHHHHHHHHHHHH
Confidence 377777777666544
No 234
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=27.51 E-value=1.5e+02 Score=27.25 Aligned_cols=75 Identities=12% Similarity=0.236 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 001675 37 HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTII 116 (1033)
Q Consensus 37 f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia 116 (1033)
-+..|.+++.... |+.+-..|.==+-.+|+.+=.. -.--++-..|..++++|.++++.||.+.-.|+.++.
T Consensus 44 llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~g--------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNG--------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGG--------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcceeehhhcchHHHHHHChhH--------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3567888885533 5666666666677777665221 111256678999999999999999999999999998
Q ss_pred HhhC
Q 001675 117 HADY 120 (1033)
Q Consensus 117 ~~d~ 120 (1033)
.+-|
T Consensus 115 ~~~w 118 (119)
T PF11698_consen 115 VNNW 118 (119)
T ss_dssp HHS-
T ss_pred HhcC
Confidence 7654
No 235
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=27.01 E-value=9.5e+02 Score=27.17 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc-cchhhcchHHHHHHHHHHhhh--hchhhHHHHHHHHHHhhccc
Q 001675 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD-LNEIRPILPQLLDEFFKLMNE--VENEDLVFTLETIVDKFGEE 574 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~-~~~l~p~l~~il~~L~~ll~~--~~~~~l~~~l~~iv~~~~~~ 574 (1033)
+...++.+...+-+++.-||.+|-+.++-++.+... ....+-+++-++-.-+..-+. .+.+.....+.++++.-+ .
T Consensus 23 ~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~ 101 (371)
T PF14664_consen 23 LSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-G 101 (371)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-C
Confidence 344444444333333377999999999999987541 222222444443333322222 333456677777776522 2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCchhH
Q 001675 575 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 654 (1033)
Q Consensus 575 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~ 654 (1033)
...+-..++..++. +.+..+ | ..+..+++|+..+.-. +|+....- +.+-+++..+++ .....
T Consensus 102 ~~~~~~~vvralva----iae~~~-------D--~lr~~cletL~El~l~---~P~lv~~~-gG~~~L~~~l~d-~~~~~ 163 (371)
T PF14664_consen 102 PKEIPRGVVRALVA----IAEHED-------D--RLRRICLETLCELALL---NPELVAEC-GGIRVLLRALID-GSFSI 163 (371)
T ss_pred cccCCHHHHHHHHH----HHhCCc-------h--HHHHHHHHHHHHHHhh---CHHHHHHc-CCHHHHHHHHHh-ccHhH
Confidence 22223355555554 343311 1 2455678888777544 56654322 333344444443 22234
Q ss_pred HHHHHHHHHHhh
Q 001675 655 FEEVLEIVSYMT 666 (1033)
Q Consensus 655 ~~~~l~ll~~l~ 666 (1033)
.+.++..+-.++
T Consensus 164 ~~~l~~~lL~lL 175 (371)
T PF14664_consen 164 SESLLDTLLYLL 175 (371)
T ss_pred HHHHHHHHHHHh
Confidence 444444444444
No 236
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.69 E-value=47 Score=31.97 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=4.0
Q ss_pred hhhHHHHHHH
Q 001675 840 HDKKVCCLGL 849 (1033)
Q Consensus 840 ~d~Kl~~lal 849 (1033)
.+|+.+.-+|
T Consensus 131 r~RRt~lR~m 140 (227)
T KOG3241|consen 131 RDRRTLLRAM 140 (227)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 237
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.59 E-value=4.8e+02 Score=31.67 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=54.4
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
+-+.|.-++.++..+.+...+..+ .+-+-+...+.--+.+..|.+|..|..++++|-+.. .+++ -.+...+...
T Consensus 98 dk~VRfrvlqila~l~d~~~eidd---~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~-~dee--~~v~n~l~~l 171 (892)
T KOG2025|consen 98 DKKVRFRVLQILALLSDENAEIDD---DVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP-KDEE--CPVVNLLKDL 171 (892)
T ss_pred chhHHHHHHHHHHHHhccccccCH---HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC-CCCc--ccHHHHHHHH
Confidence 446777788888777774433322 333333344444455778999999999999997633 2332 2233334444
Q ss_pred C-CCCCCchHHHHHHHH
Q 001675 509 L-RDPELPVRVDSVFAL 524 (1033)
Q Consensus 509 L-~d~~~~Vr~~Aa~al 524 (1033)
+ +||+.-||..|-..|
T Consensus 172 iqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 172 IQNDPSDEVRRAALSNI 188 (892)
T ss_pred HhcCCcHHHHHHHHHhh
Confidence 4 377777887765443
No 238
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=26.50 E-value=63 Score=38.90 Aligned_cols=69 Identities=30% Similarity=0.499 Sum_probs=0.0
Q ss_pred hhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001675 889 DEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDE 968 (1033)
Q Consensus 889 ~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dd~~~~~pl~~ 968 (1033)
+.+..++|++|+.+.+..+++.+++++|+..+.+|.++.+.. ..++.++++|++.+++..-.--.++
T Consensus 877 d~~~deddd~d~~s~~~~e~~~~Ed~dEdi~~~~D~~~D~~d-------------~~d~~e~e~d~~~~~e~~~~~g~d~ 943 (988)
T KOG2038|consen 877 DVDADEDDDEDENSLGSEEDGGEEDDDEDIGDSDDDEDDTSD-------------AEDDFEDEDDDEVDDEDGGEGGKDD 943 (988)
T ss_pred ccccccccccchhcccCcccccccccchhccccccccccchh-------------hccccccccccccccccccccCccc
Q ss_pred Cc
Q 001675 969 VD 970 (1033)
Q Consensus 969 vd 970 (1033)
.|
T Consensus 944 ~d 945 (988)
T KOG2038|consen 944 AD 945 (988)
T ss_pred cc
No 239
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=26.18 E-value=6.5e+02 Score=24.92 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=41.5
Q ss_pred CcChhhhHHHHHHHHHHHhhcCCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhH-
Q 001675 49 NCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHL- 127 (1033)
Q Consensus 49 ~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~L- 127 (1033)
.++..+..+....+|++|.. |-. .+++++ ..+ ..++..+..+++.+..+----+|+.+
T Consensus 3 ~vd~~l~~li~~I~rdfV~s-WY~-------~Is~d~-~F~------------~ei~~~l~~~~~~l~~R~~~vD~~~ll 61 (185)
T PF02194_consen 3 EVDEALHELIDLILRDFVNS-WYS-------KISPDP-EFP------------NEIRRILRHALRELSQRLSRVDLVKLL 61 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhh-------ccCCcH-HHH------------HHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 45677888999999999988 763 366554 331 23344444444444443222357766
Q ss_pred HHHHHHHhchh
Q 001675 128 LDWVKHNLQDQ 138 (1033)
Q Consensus 128 l~~l~~~l~s~ 138 (1033)
+..+...+...
T Consensus 62 ~~~l~~~l~~H 72 (185)
T PF02194_consen 62 LDDLLPILTKH 72 (185)
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 240
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=25.89 E-value=2.7e+02 Score=30.06 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=12.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 001675 860 LPGEALGRVFRATLDLLVAYKEQVAEA 886 (1033)
Q Consensus 860 l~~~~~~~~~~~~~~ll~~l~~~~~~~ 886 (1033)
+|..+...+.+.+.+...-++++++|-
T Consensus 116 lp~~n~~av~~~~~~~~~lvkDa~~El 142 (275)
T PF13324_consen 116 LPKDNKVAVLRRLKQSRDLVKDALEEL 142 (275)
T ss_dssp S-SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433334444444444444666544
No 241
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=25.70 E-value=1.8e+02 Score=35.42 Aligned_cols=201 Identities=13% Similarity=0.130 Sum_probs=100.5
Q ss_pred CCCcccchHHHHHHHHhhhccccCChhH-----HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc-cchh-hcchH
Q 001675 470 SSPVGHLRAKAAWVAGQYAHINFSDQNN-----FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD-LNEI-RPILP 542 (1033)
Q Consensus 470 ~~~~~~lr~ra~~~l~~~~~~~~~~~~~-----~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~-~~~l-~p~l~ 542 (1033)
.++.|.++++|.-++...+. .+.+. -..=++.++..|..+..-|+..||.||++++..... .+.+ .+..+
T Consensus 243 ~~q~~~~qsnaaaylQHlcf---gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~ 319 (717)
T KOG1048|consen 243 MSQDPSVQSNAAAYLQHLCF---GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELN 319 (717)
T ss_pred hccChhhhHHHHHHHHHHHh---hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcC
Confidence 46778888888877765432 22211 122256777788888888999999999999987531 1222 12222
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHHHhhccc--ccc-cHHHHHHHHHHHHHHHHhhcc--CCCCCC-----ChhHHHHH
Q 001675 543 QLLDEFFKLMNEVENEDLVFTLETIVDKFGEE--MAP-YALGLCQNLAAAFWRCMNTAE--ADEDAD-----DPGALAAV 612 (1033)
Q Consensus 543 ~il~~L~~ll~~~~~~~l~~~l~~iv~~~~~~--i~p-~~~~l~~~L~~~~~~~~~~~~--~d~~~~-----~~~~~~~~ 612 (1033)
. +-.++.++..+...++...+..+..+++.. +.+ .+.+-+..|.. +++...+ .+++.. .+.-....
T Consensus 320 G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~---~vI~P~Sgw~~~~~~~~~~~~~vf~n~t 395 (717)
T KOG1048|consen 320 G-VPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTD---NVIIPHSGWEEEPAPRKAEDSTVFRNVT 395 (717)
T ss_pred C-hHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH---hhcccccccCCCCcccccccceeeehhh
Confidence 2 234455566666666666666666665433 332 11122222222 2221111 011000 01111223
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHcccCch--hHHHHHHHHHHHhhhcC-CCCCHhHH
Q 001675 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ--EVFEEVLEIVSYMTFFS-PTISLEMW 677 (1033)
Q Consensus 613 ~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~~~~--~~~~~~l~ll~~l~~~~-~~isp~l~ 677 (1033)
+||.-+++.-......-..+..+.+.++-.+..+++.... --+|.+..++.++-+.. ..+++...
T Consensus 396 gcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 396 GCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred hhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 4444333222111111112233445666666766654322 35788888888887643 24444433
No 242
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.57 E-value=9.3e+02 Score=26.91 Aligned_cols=141 Identities=13% Similarity=0.195 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHH-hhhhchh---hHHHHHHHHHHhhcc
Q 001675 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL-MNEVENE---DLVFTLETIVDKFGE 573 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~l-l~~~~~~---~l~~~l~~iv~~~~~ 573 (1033)
++.+|..+.+.+.+.+...|..|. ..+-.+. .-..+.||+-..+..-... +.+ +.. .++..+.+++.+-.=
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL---~sL~tD~-gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREAL---QSLRTDP-GLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH---HHhccCC-CchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCC
Confidence 466677777776655555555544 4433332 2233444443333322211 111 111 233444444444444
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHHHhhHHHHHHHHccc
Q 001675 574 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT 649 (1033)
Q Consensus 574 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~il~~ 649 (1033)
.+.||+.+|+..+..++.. +.-...++ .++....+...-+.+..|++..+.. +..+.+++...+..+|..
T Consensus 251 ~le~Ylh~Lip~vltclv~--~~l~~~~~-~~~h~~LRd~AA~ll~~i~~~f~~~---y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVA--KQLCSRPP-DDNHWALRDYAARLLAQICRKFSTS---YNTLQPRITRTLLKALLD 320 (343)
T ss_pred chHHhHHHHHHHHHHHhhh--HhhcCCCC-CchHHHHHHHHHHHHHHHHHHcCCC---CCcHHHHHHHHHHHHHcC
Confidence 5889999999888875422 11111111 1123344445556677777766432 334556777666665543
No 243
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.16 E-value=1.5e+03 Score=28.82 Aligned_cols=106 Identities=13% Similarity=0.207 Sum_probs=63.2
Q ss_pred HHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCc---chhHHHHHHHHhhcccCC-C
Q 001675 396 ELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP---YKSELERMLVQHVFPEFS-S 471 (1033)
Q Consensus 396 ~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~---~~~~l~~~l~~~v~p~l~-~ 471 (1033)
.++...|+.+-+.++.++...+.+... ++.....+|-.++..+++.+.-..+ +..+. +++.+.+--.++ +
T Consensus 574 ~~a~~~g~~F~~~L~~~ly~vl~k~a~-----~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~-DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 574 TIAAVMGEEFQPELMDYLYPVLEKLAS-----PSEAISQVAQSCALRIADALNYGSPPHLIRENV-DYLVNSLALRLNTS 647 (1014)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcC-----chHHHHHHHHHHHHHHHHHcCCCChHHHHHhhh-HHHHHHHHHHhccC
Confidence 344455667777788888888776532 2456677777777777877643221 11122 455566654444 2
Q ss_pred C-cccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 001675 472 P-VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (1033)
Q Consensus 472 ~-~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 510 (1033)
+ +|.+ -...-++++|++.. .-.++..+++.+...+.
T Consensus 648 ~~s~~~-~~Vl~vVl~~s~~~--~i~~l~dvvq~i~~~lD 684 (1014)
T KOG4524|consen 648 GMSPRV-PDVLMVVLQYSDYG--TIPNLKDVVQTIFKLLD 684 (1014)
T ss_pred CCCchh-HHHHHHHhhcCCCC--chhhHHHHHHHHHHHHH
Confidence 1 3433 23566778887654 33567888888777765
No 244
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.02 E-value=7.1e+02 Score=24.95 Aligned_cols=143 Identities=15% Similarity=0.228 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccc-----cCCCC------CCCchhhHhHHHHHHHHHHHhhh------
Q 001675 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY-----DETPV------EYKPYRQKDGALLAIGALCDKLK------ 448 (1033)
Q Consensus 386 ~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~-----~~~~~------~~~~w~~keaal~~lg~la~~l~------ 448 (1033)
.|.+|..+|.++++..++..+ .+|-..++-.. ...+. ...+.|.|-+|+.++..+-++.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l---~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSL---FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCcee---HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 689999999999999544333 22323333222 11110 12477999999999988877643
Q ss_pred ---c--CCcc---hhHHHHHHH---HhhcccCCC-CcccchHHHHHHHHhhhccc-cC--ChhHHHHHHHHHHhcCCCCC
Q 001675 449 ---Q--TEPY---KSELERMLV---QHVFPEFSS-PVGHLRAKAAWVAGQYAHIN-FS--DQNNFRKALHSVVSGLRDPE 513 (1033)
Q Consensus 449 ---~--~~~~---~~~l~~~l~---~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~-~~--~~~~~~~~~~~l~~~L~d~~ 513 (1033)
+ ...| ...+..++. ..++-.++. .++-+-...+++++-..... |. +.+.+..++..+...+.+.+
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 1 1111 112222221 122223332 34445557788887765532 11 23677888888888888888
Q ss_pred CchHHHHHHHHHHHHHhc
Q 001675 514 LPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 514 ~~Vr~~Aa~al~~~~~~~ 531 (1033)
..|++.|..++..++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 889999999999888653
No 245
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.88 E-value=1.8e+02 Score=29.19 Aligned_cols=64 Identities=25% Similarity=0.224 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhC----CCC-hHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCC
Q 001675 6 LALILQGALSPNPEERKAAEHSLNQFQY----TPQ-HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWA 71 (1033)
Q Consensus 6 L~~~L~~tls~d~~~r~~AE~~L~~~~~----~p~-f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~ 71 (1033)
+..+|+.++++|..+|..|=+-+...-+ +|. ....|..+.++ .+..+|..|.-.+|..-.+|=+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts--~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETS--PNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCC--CChHHHHHHHHHHHHHHHHhHH
Confidence 6778888999999999999998887664 664 55666666555 4689999999999888877643
No 246
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=24.78 E-value=7.3e+02 Score=31.32 Aligned_cols=138 Identities=10% Similarity=0.148 Sum_probs=90.0
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
|....--+...++.++..+.... . ++.....+.++.-+....+.+|..+..++-.|.... .+..+.+.++.+
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~~~--~-~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-----~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRPLF--R-KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST-----PLSKMSEAILEA 379 (815)
T ss_pred chhHHHHHHHHHHHHHHhcchhh--H-HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHH
Confidence 44555556667777777765421 1 111111222333344567888888888887776522 467889999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhhccc
Q 001675 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEE 574 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~~---l~~~l~~iv~~~~~~ 574 (1033)
+.+.++.++......+.+.+..........+-+..+...+....++...+- ...++.+++..++++
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999998888888887654344556677778888888777666553 445555566666654
No 247
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.63 E-value=2.4e+02 Score=26.16 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=38.4
Q ss_pred HhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 485 GQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
..++...+.++..+..++..+...|++.++.|+.-|-..|..+|...
T Consensus 23 ~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 23 EEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 34444455566678999999999999999889999999999999874
No 248
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=24.54 E-value=1.1e+03 Score=26.81 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=47.7
Q ss_pred HHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhChHHHH
Q 001675 730 SSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTL 804 (1033)
Q Consensus 730 ~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~l 804 (1033)
.+.+......+.++.+|++++-.++..-++ ....=..++.+++.... .....++...+.+++=..+.||+.+.
T Consensus 72 i~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~~~~~vvralvaiae-~~~D~lr~~cletL~El~l~~P~lv~ 144 (371)
T PF14664_consen 72 IRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKEIPRGVVRALVAIAE-HEDDRLRRICLETLCELALLNPELVA 144 (371)
T ss_pred HhhhcccCCChHHHHHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHhhCHHHHH
Confidence 444543334455678999999999887443 22222345555544333 35667888899999999999998653
No 249
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=24.39 E-value=69 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHH
Q 001675 499 RKALHSVVSGLRDPELPVRVDSVFA 523 (1033)
Q Consensus 499 ~~~~~~l~~~L~d~~~~Vr~~Aa~a 523 (1033)
..+...+...|.|+++.||.+|...
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5788888899999999999888764
No 250
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=8.5e+02 Score=28.81 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhccccchhhcchHHHHHH
Q 001675 469 FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDE 547 (1033)
Q Consensus 469 l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d-~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~ 547 (1033)
.++.+-=+|+.|...+|-.+ +++++. +...++.|.+ .+.-||...|.||.-+|.....+ ..-.+++.
T Consensus 561 vsD~nDDVrRAAViAlGfvc---~~D~~~----lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-----~a~diL~~ 628 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVC---CDDRDL----LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-----VATDILEA 628 (926)
T ss_pred cccCchHHHHHHHHheeeeE---ecCcch----hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-----HHHHHHHH
Confidence 34455567777777776543 445444 4445555554 46668988899998888765311 11233333
Q ss_pred HHHHhhhhchhhHHHHHHHHHHhhcccccccHHHHHHHHHH
Q 001675 548 FFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (1033)
Q Consensus 548 L~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (1033)
|..=-+.+-....+-++.-|.-...+++.|-...|..++.+
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~ 669 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNR 669 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHH
Confidence 32111111111222333334445667788877777666554
No 251
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=24.31 E-value=3.7e+02 Score=21.70 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=41.3
Q ss_pred CCCCchHHHHHHHHHHHHhhChH-HHHHHhcCCCHHHHHHHHHHHHHHHHhHHH
Q 001675 966 IDEVDPFVFFVDTIKVMQASDPL-RFQNLTQTLEFQYQALANGVAQHADQRRVE 1018 (1033)
Q Consensus 966 l~~vd~~~~~~~~l~~~~~~~~~-~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~ 1018 (1033)
+....-+.|+..++..+..+... -...+.++++++++..+.+=+.+..++..+
T Consensus 6 ~ys~~~~DFlAsS~A~Me~Qgr~Idvd~V~gnmsee~r~~F~eRla~Yr~~~~~ 59 (67)
T PRK02922 6 LYSLNNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQMMQ 59 (67)
T ss_pred cccccchhHHHHHHHHHHHcCCCccHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44456678899999888766554 468999999999999999888877776554
No 252
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=1.3e+03 Score=27.86 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHH
Q 001675 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (1033)
Q Consensus 497 ~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L 548 (1033)
.+..++..++..=...+.-+|+.|-.++..+|.... ...+.|.+-...-.+
T Consensus 279 ~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~-~~~l~~vlk~mY~af 329 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK-STCLDPVLKTMYLAF 329 (661)
T ss_pred HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 567777777766666677899999999999887653 444545444443333
No 253
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=24.20 E-value=3.7e+02 Score=27.56 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHH-HHHHHHHhhhcCCcchhHHHHHHHHh
Q 001675 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALL-AIGALCDKLKQTEPYKSELERMLVQH 464 (1033)
Q Consensus 386 ~R~aa~~ll~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~-~lg~la~~l~~~~~~~~~l~~~l~~~ 464 (1033)
.|.+|.+++...-....... ++.+...+... .||-..|+... ++|.+. ... + .+ ...
T Consensus 62 ~r~~al~~l~~~~~~~~~~~----~~~~~~~l~~~-------~~Wd~vD~~~~~i~g~~~---~~~-~---~~----~~~ 119 (208)
T cd07064 62 YQYVAIDLLRKYKKFLTPED----LPLLEELITTK-------SWWDTVDSLAKVVGGILL---ADY-P---EF----EPV 119 (208)
T ss_pred HHHHHHHHHHHHHhcCCHHH----HHHHHHHHcCC-------chHHHHHHHHHHHhHHHH---hCC-h---hH----HHH
Confidence 57777777766444332222 34444444431 38999887543 334322 121 1 11 222
Q ss_pred hcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHH
Q 001675 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (1033)
Q Consensus 465 v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~ 543 (1033)
+..-..+++.++|+.|+...-.|.. ......++..+..++.|++.-|+-+-..+|+.+.... ++.+.+|+..
T Consensus 120 l~~W~~s~~~W~rR~ai~~~l~~~~-----~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d--~~~V~~fl~~ 191 (208)
T cd07064 120 MDEWSTDENFWLRRTAILHQLKYKE-----KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTN--PDWVRDFVAA 191 (208)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccC--HHHHHHHHHH
Confidence 3333467888999988865433332 1223556667777888988889988899999887663 4556666533
No 254
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=24.17 E-value=2.3e+02 Score=26.79 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHHHHhcC
Q 001675 1013 DQRRVEIEKEKVEKASA 1029 (1033)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~ 1029 (1033)
++++.+++++-+..++|
T Consensus 115 EqQl~emEkeq~~qq~~ 131 (137)
T PF04281_consen 115 EQQLVEMEKEQQMQQQA 131 (137)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666655555554
No 255
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.08 E-value=5e+02 Score=25.66 Aligned_cols=100 Identities=14% Similarity=0.232 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhChHHHHHHHHhhCchHHHHHHHHH-H
Q 001675 745 PAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQ-M 823 (1033)
Q Consensus 745 ~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~-~ 823 (1033)
.|+.++.+++..+...++ +..|+..+...|.+ ....+.....++.++...+|..+.+.|++ +. .-|+.-+. +
T Consensus 46 ~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~--l~-~~l~~~L~~k 118 (169)
T PF08623_consen 46 AAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQRLDS--LV-EPLRKTLSKK 118 (169)
T ss_dssp HHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCTT--TH-HHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HH-HHHHHHhhcc
Confidence 467777777777666654 45566666555544 55566666777888888899998888774 22 22322222 2
Q ss_pred HHHHHhhcccccccchhhhHHHHHHHHHHhc
Q 001675 824 LQQVKKNGLRVNFKREHDKKVCCLGLTSLLA 854 (1033)
Q Consensus 824 ~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~ 854 (1033)
.. ...-.+.+-+..|.+.+++-++.-|.
T Consensus 119 ~k---~~AvkQE~Ek~~E~~rs~lr~~~~l~ 146 (169)
T PF08623_consen 119 LK---ENAVKQEIEKQQELIRSVLRAVKALN 146 (169)
T ss_dssp -----TTS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred CC---CCcccccHHHHHHHHHHHHHHHHHHH
Confidence 11 11111245556677777777777773
No 256
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.88 E-value=1e+02 Score=29.35 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhHHHHH
Q 001675 988 LRFQNLTQTLEFQYQALANGVAQHADQRRVEIE 1020 (1033)
Q Consensus 988 ~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~ 1020 (1033)
++++...++||+|+|+.++++.+....+-.+..
T Consensus 35 G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LR 67 (143)
T PRK11546 35 GMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALR 67 (143)
T ss_pred CCCccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778999999999998885555444443
No 257
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.53 E-value=6.1e+02 Score=24.74 Aligned_cols=63 Identities=8% Similarity=0.249 Sum_probs=39.9
Q ss_pred CchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhhChHHHHHHH
Q 001675 744 EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK--SYLKCLLVQVIADALYYNSSLTLSIL 807 (1033)
Q Consensus 744 ~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~--~~~~~~~l~v~~~~~~~~~~~~l~~L 807 (1033)
..+++++..++.+++..+..-++-++..++.++-..+. ..-+...++++.... .+|+.++++-
T Consensus 91 ~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~-~~p~~l~~lf 155 (168)
T PF12783_consen 91 SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC-KDPQFLVDLF 155 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH-hChhHHHHHH
Confidence 45678888888777766666677788888876654332 234455566555543 5776555443
No 258
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=23.42 E-value=1.3e+02 Score=30.20 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHH
Q 001675 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (1033)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L 548 (1033)
...+...+.+|+... ...+++.+..... +..||.+|+..|+.+ ..+.+.-|++++++.|
T Consensus 61 ~~e~~~ll~~W~~~~------~~~aL~LL~~~~~--~~~Vr~yAV~~L~~~-----~d~~l~~yLpQLVQaL 119 (184)
T smart00145 61 VAQALSLLKKWAPLD------PEDALELLSPKFP--DPFVRAYAVERLESA-----SDEELLLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHcCCCCC------HHHHHHHhCccCC--CHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 259
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.28 E-value=6.8e+02 Score=32.05 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHhhhcccCC-hhhHhhhhhCHHHHHHHhcCcccccC-CHHHHHHHHHHHHHHhccc---chH-HHHHHHH
Q 001675 340 QPRLDVLLFEIVFPLMCFN-DNDQKLWDEDPHEYVRKGYDIIEDLY-SPRTASMDFVSELVRKRGK---ENL-QKFIQFI 413 (1033)
Q Consensus 340 ~~~l~~li~~~i~p~l~l~-~~d~e~we~Dp~efi~~~~d~~~d~~-s~R~aa~~ll~~L~~~~~~---~~~-~~l~~~i 413 (1033)
+|.|..|...++ .+. .-+.++..+.=..|.-+..+++.... .-|..|+=+|..++..|+. .++ ..++..|
T Consensus 529 rpiLVFIWAKIL----AvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iC 604 (1387)
T KOG1517|consen 529 RPILVFIWAKIL----AVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGIC 604 (1387)
T ss_pred hhhHHHHHHHHH----hcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHH
Confidence 455555544433 222 23456666554444433333321222 4577777777888887642 222 3466677
Q ss_pred HHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccc--
Q 001675 414 VGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-- 491 (1033)
Q Consensus 414 ~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-- 491 (1033)
.+.++.. ..|..|-=++.++|.+=+...+.. + ..+...-...+...|.++-|-+|+.|...+|-|-+..
T Consensus 605 le~lnd~-------~~pLLrQW~~icLG~LW~d~~~Ar-w-~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d 675 (1387)
T KOG1517|consen 605 LEHLNDD-------PEPLLRQWLCICLGRLWEDYDEAR-W-SGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD 675 (1387)
T ss_pred HHHhcCC-------ccHHHHHHHHHHHHHHhhhcchhh-h-ccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc
Confidence 7776541 157777777888887766543211 0 0111112333555677888999999999999986531
Q ss_pred -cCCh-h-----------------HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 001675 492 -FSDQ-N-----------------NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 492 -~~~~-~-----------------~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~ 530 (1033)
|... . ...+....++..++|..+.||.+-+.++..+...
T Consensus 676 ~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 676 NFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred ccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 2211 1 1111222455556788888888888888887754
No 260
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=23.27 E-value=1.5e+02 Score=30.24 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hhChHHHHH
Q 001675 727 SMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADAL-YYNSSLTLS 805 (1033)
Q Consensus 727 ~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~l~v~~~~~-~~~~~~~l~ 805 (1033)
.++..+++.+ + ......++.++..++.+++.+..+.+.+++..+...-.+ ..-.++..+=.++..++ ..+|+.+++
T Consensus 3 ~~~e~~L~~~-y-~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~-~~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 3 ATLESLLSYR-Y-QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRES-EDFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHHhCcc-h-HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 4455555322 2 222445889999999999988778888877776553332 22345555555555555 358999998
Q ss_pred HHH
Q 001675 806 ILH 808 (1033)
Q Consensus 806 ~L~ 808 (1033)
+|.
T Consensus 80 ~lP 82 (198)
T PF08161_consen 80 ILP 82 (198)
T ss_pred HCC
Confidence 875
No 261
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=23.14 E-value=77 Score=40.22 Aligned_cols=53 Identities=30% Similarity=0.576 Sum_probs=0.0
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 001675 894 DDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEE 961 (1033)
Q Consensus 894 ~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dd~~ 961 (1033)
.++++++.+.+++|++.+|+|.+++.++.|.++.+++ +.+.++++|+.++++.
T Consensus 338 ~~~~~~~~~~~~ed~e~~ddD~e~~~ed~d~~~d~~~---------------~~~~~~d~e~~~ee~~ 390 (840)
T PF04147_consen 338 EEEEEEEEGEEDEDDEEEDDDEEEEEEDEDEDEDEED---------------EEDEESDDEDEEEEEE 390 (840)
T ss_pred ccccccccCccccccccccCccccccccccccchhhh---------------cccccccccccccccc
No 262
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=23.09 E-value=6.9e+02 Score=26.30 Aligned_cols=96 Identities=14% Similarity=0.223 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcCChhhhhhh-hhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHH
Q 001675 317 RVTNLILQYLSNSISKNSMYNLL-QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (1033)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~-~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~ 395 (1033)
.-++.++..+..+++++.++..| +.|++- .++|++..+..+ -|. ...|-++..+|.
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPl----ylYpfL~Tt~~~------r~f-------------EyLRLtsLGVIg 150 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPL----YLYPFLNTTSKS------RPF-------------EYLRLTSLGVIG 150 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChh----hhHHhhhccccC------Cch-------------HHHhHHHHHHHH
Confidence 34688999999999999988754 555544 456777554432 233 346777888888
Q ss_pred HHHHhcccchHH-----HHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHH
Q 001675 396 ELVRKRGKENLQ-----KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGAL 443 (1033)
Q Consensus 396 ~L~~~~~~~~~~-----~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~l 443 (1033)
.|++.-.+++.. .++++|..++... +-..|-.|.++++-|
T Consensus 151 aLvk~dd~eVi~fLl~TeIVPlCLrime~G--------SelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 151 ALVKNDDQEVIRFLLTTEIVPLCLRIMESG--------SELSKTVATFILQKI 195 (293)
T ss_pred HHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--------cHHHHHHHHHHHHHH
Confidence 888876555433 2445555555432 224455566665543
No 263
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.06 E-value=7.2e+02 Score=24.31 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=30.4
Q ss_pred CChHHHHHHHhhH-HHHHHHHcccCchhHHHHHHHHHHHhhhcCC
Q 001675 627 RLPHLFVQIEPTL-LPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP 670 (1033)
Q Consensus 627 ~~~~~~~~l~~~~-~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~ 670 (1033)
.++..|..+.+.+ ++-+-..|+....+.-.+++.|+.++..+++
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 4566566554333 5666666767777888899999999887653
No 264
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=23.03 E-value=3.3e+02 Score=32.12 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=51.5
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
+-+.|.-++.++..+++.+.+..+ .+-+-+...+..-+-+-.+.+|..|..++++|-+..-..++....++..+++
T Consensus 104 dk~VR~r~lqila~~~d~v~eIDe---~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vq- 179 (885)
T COG5218 104 DKKVRKRSLQILALLSDVVREIDE---VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQ- 179 (885)
T ss_pred chhHHHHHHHHHHHHHHhcchHHH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh-
Confidence 456777788888888877655321 2222222222222225678999999999999987654333333443333332
Q ss_pred CCCCCCchHHHHH
Q 001675 509 LRDPELPVRVDSV 521 (1033)
Q Consensus 509 L~d~~~~Vr~~Aa 521 (1033)
+||+--||..|.
T Consensus 180 -nDPS~EVRr~al 191 (885)
T COG5218 180 -NDPSDEVRRLAL 191 (885)
T ss_pred -cCcHHHHHHHHH
Confidence 366666776554
No 265
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=3.5e+02 Score=29.40 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=63.2
Q ss_pred chhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 001675 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1033)
+|-.+=-++..|.+++..=.+. ...++...+. .|+..++++.--+-+.||.+++-..+.. +. .+.+-+..++..
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~--l~~~L~~vii-~vvkslKNlRS~VsraA~~t~~difs~l--n~-~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPES--LNPMLHEVII-AVVKSLKNLRSAVSRAACMTLADIFSSL--NN-SIDQELDDLVTQ 174 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHH--HHHHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHH
Confidence 7888888888888888753331 2233433332 2445566665567788898888765432 21 122233333333
Q ss_pred -CC---CCCCchHHHHHHHHHHHHHhccccchhhcchHHH
Q 001675 509 -LR---DPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544 (1033)
Q Consensus 509 -L~---d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~i 544 (1033)
+. ..+-=||..|-.||..+..+-. +..+.+.+.+.
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~vt-p~~~L~~L~~~ 213 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHVT-PQKLLRKLIPI 213 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 22 2344599999999999998752 34344433333
No 266
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=22.66 E-value=2e+02 Score=25.64 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=42.1
Q ss_pred cchhhcchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhhccc-ccccHHHHHHHHHH
Q 001675 534 LNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEE-MAPYALGLCQNLAA 588 (1033)
Q Consensus 534 ~~~l~p~l~~il~~L~~ll~~~~~~---~l~~~l~~iv~~~~~~-i~p~~~~l~~~L~~ 588 (1033)
++.+.||++.++-.+...|..+..+ +-..+++.+++.+++. +..+...+++....
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ 60 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLD 60 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHH
Confidence 4678899999999998888876654 4678888999999988 55566666666554
No 267
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.63 E-value=1.4e+03 Score=27.68 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhhh
Q 001675 476 LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (1033)
Q Consensus 476 lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 555 (1033)
+|..|..-++..+.. .|......+..++..++|..-.||+.|..||..+..+.. .=...+..++..+.+
T Consensus 389 VR~AAV~Sl~~La~s---sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D- 457 (823)
T KOG2259|consen 389 VRRAAVASLCSLATS---SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-------IREEQLRQILESLED- 457 (823)
T ss_pred HHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHh-
Q ss_pred chhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHHH
Q 001675 556 ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI 635 (1033)
Q Consensus 556 ~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l 635 (1033)
.+.++...+..+.....=.-.....-++.+|...+.+ .+.-.-.++.||..|-+. ++..+.++
T Consensus 458 ~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~k--------------yPqDrd~i~~cm~~iGqn---H~~lv~s~ 520 (823)
T KOG2259|consen 458 RSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGK--------------YPQDRDEILRCMGRIGQN---HRRLVLSN 520 (823)
T ss_pred cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh--------------CCCCcHHHHHHHHHHhcc---ChhhHHHH
Q ss_pred HhhHHHHHHHHcccCch---hHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHhhhhHhhhhhhh
Q 001675 636 EPTLLPIMRRMLTTDGQ---EVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNI 698 (1033)
Q Consensus 636 ~~~~~p~i~~il~~~~~---~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~~~~~ 698 (1033)
...++-.....=+.+.+ .++--.+-++-+.....+++--.+...+..-+..+.+......+.+
T Consensus 521 m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~Pea~hrhla~Lr~sspnLv~~~ 586 (823)
T KOG2259|consen 521 MGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRPEAHHRHLAILRCSSPNLVGDG 586 (823)
T ss_pred HHHHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCeeeechHHHHHHHHHHhccCCCCCCcc
No 268
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=22.37 E-value=1.3e+02 Score=29.81 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHH
Q 001675 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (1033)
Q Consensus 477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L 548 (1033)
...+...+.+|.... ...+++.+-....| ..||.+|+..|+.+ ..+.+.-|++++++.|
T Consensus 56 v~e~~~lL~~W~~i~------~~~aLeLL~~~f~d--~~VR~yAV~~L~~~-----sd~eL~~yL~QLVQaL 114 (171)
T cd00872 56 VAQMYQLLKRWPKLK------PEQALELLDCNFPD--EHVREFAVRCLEKL-----SDDELLQYLLQLVQVL 114 (171)
T ss_pred HHHHHHHHHCCCCCC------HHHHHHHCCCcCCC--HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 269
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=1e+03 Score=25.95 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhCC
Q 001675 4 PSLALILQGALSPNPEERKAAEHSLNQFQYT 34 (1033)
Q Consensus 4 ~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~ 34 (1033)
.++.++..-+-+++|.+|+.|=+.|-.+...
T Consensus 3 s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~ 33 (353)
T KOG2973|consen 3 SELVELVELLHSLSPPVRKAAVEHLLGLTGR 33 (353)
T ss_pred hHHHHHHHHhccCChHHHHHHHHHHhhcccc
Confidence 4566777777788889999998888777665
No 270
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=22.17 E-value=1.5e+02 Score=36.25 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=51.8
Q ss_pred chhhHhHHHHHHHHHHHhhhcCC-----------cchhHHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhH
Q 001675 429 PYRQKDGALLAIGALCDKLKQTE-----------PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN 497 (1033)
Q Consensus 429 ~w~~keaal~~lg~la~~l~~~~-----------~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~ 497 (1033)
+...+.+|+.++|++.+...... .....+.+++.+.+..........-+--++..||..+.
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 45788999999999998865441 11122223333332211112222334445566665532
Q ss_pred HHHHHHHHHhcCCCC---CCchHHHHHHHHHHHHHhc
Q 001675 498 FRKALHSVVSGLRDP---ELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~---~~~Vr~~Aa~al~~~~~~~ 531 (1033)
..+++.+...+.+. ...+|..|+.||.++...+
T Consensus 520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 23556666676654 4559999999999885543
No 271
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.07 E-value=2.8e+02 Score=33.56 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhc----c---cchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHH
Q 001675 386 PRTASMDFVSELVRKR----G---KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 458 (1033)
Q Consensus 386 ~R~aa~~ll~~L~~~~----~---~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~ 458 (1033)
.|..|.--+.+++.++ + ..+...+.+++.+.|.+..+. .+-..+-.++.+||.++..- ..
T Consensus 413 l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~~---------~i 479 (574)
T smart00638 413 LRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHPS---------SI 479 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCChh---------HH
Confidence 4555554444554432 1 122345666666666543211 13345778888998776531 11
Q ss_pred HHHHHhhcccCCCCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCC--CCCchHHHHHHHHHH
Q 001675 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALRS 526 (1033)
Q Consensus 459 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d--~~~~Vr~~Aa~al~~ 526 (1033)
..+..++... ....+++|..|+|.+.+.+... + ..+.+.++..+.+ .+.-||+.|+.+|-.
T Consensus 480 ~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~--p----~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 480 KVLEPYLEGA-EPLSTFIRLAAILALRNLAKRD--P----RKVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhC--c----hHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 2233433311 2345789999999999887532 2 2233333334333 233489888877653
No 272
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.05 E-value=4.1e+02 Score=22.79 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=36.4
Q ss_pred cCChHHHHHHHHHHHHHHHhhCC---CCchhHHHHHHHHhchh---hHHHHHHHHH
Q 001675 99 QVPPLLRVQLGECLKTIIHADYP---EQWPHLLDWVKHNLQDQ---QVYGALFVLR 148 (1033)
Q Consensus 99 ~~~~~ir~~la~~i~~Ia~~d~P---~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~ 148 (1033)
.++..+|..+-.|+..|...-.. ..|+.++..+-....++ -+..|..++.
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 45678999999999998876544 57999999888877654 2455555543
No 273
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.86 E-value=1.3e+03 Score=26.91 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=70.0
Q ss_pred HHHHHHHHhhcccCCCCcccchHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcc
Q 001675 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACR 532 (1033)
Q Consensus 456 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~--~~~~~~~~~l~~~L~d-~~~~Vr~~Aa~al~~~~~~~~ 532 (1033)
.+.+++. ++..-..+|...+|+-||..+|.-++.. .+. .+...++.+++..|-| .+..|..+|..+|.......
T Consensus 255 lL~s~~~-~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~- 331 (533)
T KOG2032|consen 255 LLGSVLL-SLANKATDPSAKSRGMACRGLGNTASGA-PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA- 331 (533)
T ss_pred cHHHHHH-HHHHhccCchhHHHHHHHHHHHHHhccC-cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-
Confidence 3444432 2333445677799999999999987642 111 4567777777777765 46889999999999998876
Q ss_pred ccchhhcchHHHHHHHHHHhhhhch
Q 001675 533 DLNEIRPILPQLLDEFFKLMNEVEN 557 (1033)
Q Consensus 533 ~~~~l~p~l~~il~~L~~ll~~~~~ 557 (1033)
....+.+|.-++--++..+....+.
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~ 356 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDD 356 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcCh
Confidence 4677888888888777777655433
No 274
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=21.33 E-value=65 Score=39.27 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.9
Q ss_pred CCccCchhHHHHHHHHHc
Q 001675 740 DGDIEPAPKLIEVVFQNC 757 (1033)
Q Consensus 740 ~~~~~~a~~ll~~il~~~ 757 (1033)
+.|..+||++|..++.+-
T Consensus 9 dvDalcA~kiL~~Llk~d 26 (622)
T PF02724_consen 9 DVDALCACKILTSLLKSD 26 (622)
T ss_pred ChHHHHHHHHHHHHHHhc
Confidence 556788999999999873
No 275
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=21.31 E-value=1.6e+03 Score=27.76 Aligned_cols=70 Identities=11% Similarity=-0.051 Sum_probs=45.9
Q ss_pred cccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHH
Q 001675 473 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544 (1033)
Q Consensus 473 ~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~i 544 (1033)
+|=+-+.++.|+|+|.+|.--+--.-..+++.+..+|+- ..+|.+||.|+-.++..+-.+-.=.+++..+
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~i--eelR~aac~cilaiVsKkMkP~dKL~lln~L 275 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLNI--EELRIAACNCILAIVSKKMKPMDKLALLNML 275 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhH--HHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 677889999999999887511110113456666666663 3589999999999998764333333444444
No 276
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=21.22 E-value=50 Score=21.24 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=9.4
Q ss_pred chHHHHHHHHhhhc
Q 001675 476 LRAKAAWVAGQYAH 489 (1033)
Q Consensus 476 lr~ra~~~l~~~~~ 489 (1033)
+|..|.|.+|++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 47778888877654
No 277
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=21.04 E-value=4.1e+02 Score=34.35 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=7.2
Q ss_pred hChHHHHHHHHh
Q 001675 798 YNSSLTLSILHK 809 (1033)
Q Consensus 798 ~~~~~~l~~L~~ 809 (1033)
.+|...+.+|.+
T Consensus 1150 a~PGE~VGvlAA 1161 (1640)
T KOG0262|consen 1150 ADPGEPVGVLAA 1161 (1640)
T ss_pred cCCCCcceeeee
Confidence 566666666654
No 278
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=21.01 E-value=1.1e+03 Score=28.87 Aligned_cols=112 Identities=9% Similarity=0.140 Sum_probs=67.9
Q ss_pred HHHhcc-cchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCC-----
Q 001675 397 LVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS----- 470 (1033)
Q Consensus 397 L~~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~----- 470 (1033)
|.++.+ +.+.+.+++++..-+.. .+....+.++..+...++.+. .+++.+.|+|.+.
T Consensus 377 L~~Kt~~e~~~~~IlplL~~S~~~--------~~~~iQ~~~L~~lptv~e~iD---------~~~vk~~ilP~l~~l~~~ 439 (700)
T KOG2137|consen 377 LKEKTPPEEVKEKILPLLYRSLED--------SDVQIQELALQILPTVAESID---------VPFVKQAILPRLKNLAFK 439 (700)
T ss_pred HHhhCChHHHHHHHHHHHHHHhcC--------cchhhHHHHHHhhhHHHHhcc---------HHHHHHHHHHHhhcchhc
Confidence 444443 45667777777666543 267899999999999998763 1344555666553
Q ss_pred CCcccchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001675 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (1033)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~ 527 (1033)
.....+|-.++-|++.+.+.. +.......+.-+..+++..++.+...-......+
T Consensus 440 tt~~~vkvn~L~c~~~l~q~l--D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 440 TTNLYVKVNVLPCLAGLIQRL--DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred ccchHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 356778999999999887532 3223344444555666544444433333333333
No 279
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.95 E-value=4.7e+02 Score=33.34 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=60.8
Q ss_pred hhhHhHHHHHHHHHHHhhhc--CCcchhHHHHHHHHhhcccCCC-CcccchHHHHHHHHhh-hccc---cCChhHHHHHH
Q 001675 430 YRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQY-AHIN---FSDQNNFRKAL 502 (1033)
Q Consensus 430 w~~keaal~~lg~la~~l~~--~~~~~~~l~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~-~~~~---~~~~~~~~~~~ 502 (1033)
...|--|-+.+..+.+...- ..-+..++.. +-+..+++ ++|+||-=+|.|+|++ .++. |.. .-....
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~----iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G--~r~~Ah 644 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIG----ICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSG--RRDNAH 644 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHH----HHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcc--ccccHH
Confidence 35666666777777766431 1111222322 33334555 4799999999999995 3321 111 123344
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 001675 503 HSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (1033)
Q Consensus 503 ~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~ 531 (1033)
..++..|.|+.+-||.+|..||..|+...
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 56666778888889999999999999864
No 280
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=20.50 E-value=2e+03 Score=28.87 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=49.1
Q ss_pred cchHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhhh
Q 001675 475 HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (1033)
Q Consensus 475 ~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~Aa~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 554 (1033)
=+|..+.|.++-+-... ++......+..+...+..++--+|-.....++..+... .+.+...++.++.....-+++
T Consensus 144 pVre~caq~L~~~l~~~--~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air--~d~l~~~~~~vl~~~i~~L~d 219 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHM--DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIR--QDLLFQLLNLVLDFVIEGLED 219 (1549)
T ss_pred hhHHHHHHHHHHHHHhh--hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhh
Confidence 37889999999887654 55567777888777777666666667777777766632 233334444455554444443
No 281
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=20.38 E-value=2.6e+02 Score=33.32 Aligned_cols=96 Identities=23% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCC---CCCCCCCCCCCCCCCCCCchHHHHH
Q 001675 901 FQTDDEDDDGDGSD-KEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDD---SDDDFSDDEELQSPIDEVDPFVFFV 976 (1033)
Q Consensus 901 ~~~~~~~~d~~~~~-~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~dd~~~~~pl~~vd~~~~~~ 976 (1033)
+.+.+.|++|+++. ++.-+++|++++.+.+ +++++.+|+ ....+.||+.-++--.+.|..+..+
T Consensus 518 DYEVdSDeEWEEEepGESlS~sEddedd~~e------------Ed~edEdDgffVPhgyLSedEgv~d~~~d~D~~e~dK 585 (811)
T KOG4364|consen 518 DYEVDSDEEWEEEEPGESLSDSEDDEDDSLE------------EDCEDEDDGFFVPHGYLSEDEGVQDDRMDIDPSEQDK 585 (811)
T ss_pred cccccCcccccccCCCccccccccccccccc------------cccccccCCeecCCccccccccccccccCcchhhhhh
Q ss_pred HHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001675 977 DTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHA 1012 (1033)
Q Consensus 977 ~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 1012 (1033)
+.=..=+-.-...|-. |++-++..++.+..++
T Consensus 586 ~tek~k~r~~gp~f~d----ln~~k~~~~~A~~ah~ 617 (811)
T KOG4364|consen 586 NTEKSKQRQEGPEFCD----LNQVKQKHLQALTAHA 617 (811)
T ss_pred hhhhhhhhhcCchHhh----hcchhHHHHHHHHHHH
No 282
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=20.10 E-value=2.5e+03 Score=29.56 Aligned_cols=130 Identities=8% Similarity=0.105 Sum_probs=64.6
Q ss_pred hHHHHHHHH---cccCchhHHHHHHHHH-HHhhhcCCCCCHhHHH------HHHHHHHHhhh------------------
Q 001675 638 TLLPIMRRM---LTTDGQEVFEEVLEIV-SYMTFFSPTISLEMWS------LWPLMMEALAD------------------ 689 (1033)
Q Consensus 638 ~~~p~i~~i---l~~~~~~~~~~~l~ll-~~l~~~~~~isp~l~~------l~~~l~~~~~~------------------ 689 (1033)
.-+|++... ...+..+.-..+++.+ ..+..+...++|..|. +||. +..+..
T Consensus 1344 lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPI-Fd~l~~~~~~~~~~~~~~~~~~~~ 1422 (1780)
T PLN03076 1344 FWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPI-FDYVRHAIDPSGGDEPEGQGVDGD 1422 (1780)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH-HHHHHHhhcccccccccccccccc
Confidence 445665542 3333446666666644 3444566789999984 2332 222210
Q ss_pred ----hHhhhh-hhhhhhhhhhhccCcccccccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCch-h
Q 001675 690 ----WAIDFF-PNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVD-H 763 (1033)
Q Consensus 690 ----~~~~~~-~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~-~ 763 (1033)
.....+ ..+..+|++.+..-...|- .-...+..++..+...+..+ ++ .-+..++.++..++...+..+. .
T Consensus 1423 ~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd--~L~~~L~~~l~ll~~ci~q~-n~-~la~ig~~~l~~li~~ng~~F~~~ 1498 (1780)
T PLN03076 1423 QGELDQDAWLYETCTLALQLVVDLFVKFYP--TVNPLLKKVLMLLVSFIKRP-HQ-SLAGIGIAAFVRLMSNAGHLFSDE 1498 (1780)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCc-hH-HHHHHHHHHHHHHHHHhhccCCHH
Confidence 001122 4444555554444333221 11135566666666666432 22 2145677888888888776654 3
Q ss_pred chHHHHHHH
Q 001675 764 WVEPYLRIT 772 (1033)
Q Consensus 764 ~l~~il~~~ 772 (1033)
....|+..+
T Consensus 1499 ~W~~i~~~~ 1507 (1780)
T PLN03076 1499 KWLEVVLSL 1507 (1780)
T ss_pred HHHHHHHHH
Confidence 344444433
Done!