Query 001675
Match_columns 1033
No_of_seqs 252 out of 1690
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 17:00:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001675.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_971-975//hhsearch_pdb/001675hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 1.0 1 1 877.3 74.5 902 1-1010 1-958 (960)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 461.0 70.0 809 3-1009 12-850 (852)
3 3m1i_C Exportin-1; heat repeat 1.0 1 1 424.0 55.4 739 1-805 13-841 (1049)
4 2x1g_F Cadmus; transport prote 1.0 1 1 416.1 55.8 726 1-778 4-840 (971)
5 2x19_B Importin-13; nuclear tr 1.0 1 1 404.6 66.0 736 1-796 21-845 (963)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 402.7 58.6 692 1-778 1-734 (861)
7 1qgr_A Protein (importin beta 1.0 1 1 357.0 56.9 685 5-778 2-745 (876)
8 4hat_C Exportin-1; heat repeat 1.0 1 1 339.9 53.7 740 1-805 13-841 (1023)
9 3gjx_A Exportin-1; transport, 1.0 1 1 325.9 49.7 586 1-626 25-705 (1073)
10 3ibv_A Exportin-T; karyopherin 1.0 1 1 321.4 57.4 736 1-855 3-871 (980)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=877.32 Aligned_cols=902 Identities=17% Similarity=0.251 Sum_probs=741.6
Q ss_pred CC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99-47899999982399988899999999972079871999999987127680246999999998784117988888689
Q 001675 1 MD-LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (1033)
Q Consensus 1 Md-~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~~~~~ 79 (1033)
|. +++|.++|.+++|||+++| ||++|++++++|||+..|++|+.+.+.+..+|++|+++|||.|+++|+...+ ..
T Consensus 1 M~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~--~~ 76 (960)
T 1wa5_C 1 MSDLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG--NH 76 (960)
T ss_dssp CCHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS--CB
T ss_pred CCCHHHHHHHHHHHCCCCHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC--CC
T ss_conf 9759999999997659987899--9999998555998899999998657988889999999999999854887656--78
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHCC
Q ss_conf 99966799999999989712895889999999999997317999625799999972034---498899999999997046
Q 001675 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (1033)
Q Consensus 80 ~i~~~~k~~ir~~ll~~l~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~ 156 (1033)
.+++++|..||+.+++++..+++.||++++.+|+.|+++|||++||+|++.+++.++++ .++++|.+|+++++++++
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89989999999999999980879999999999999998617130157999999984789889999999999999999887
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHH---HHCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf --785462279999999989999999998---4022997----2399999999999687665138712279233889999
Q 001675 157 --KSDEERTPVYRIVEETFHHLLNIFNRL---VQIVNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI 227 (1033)
Q Consensus 157 --~~~~~~~~l~~i~~~~~p~L~~l~~~~---~~~~~~~----~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~ 227 (1033)
++++.+.++..++..++|.+++++..+ +....++ ....++++.++|+|++++..++|..+. +++..|++
T Consensus 157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~--~~~~~~~~ 234 (960)
T 1wa5_C 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVGMG 234 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHH
T ss_conf 6148477899999999989999999999999987357987999999999999999999986256559999--98999999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997258999999999946642102268999999999999998489899984349999999997399999999999996
Q 001675 228 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 307 (1033)
Q Consensus 228 ~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~ 307 (1033)
.|.+++....|.. ..|+++++..+||++|||+++++.+++++|++ . | .+|++.+++.+|+.+..
T Consensus 235 ~~~~~l~~~~p~~--~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~---------~----f-~~~~~~~~~~~~~~l~~ 298 (960)
T 1wa5_C 235 IFHKYLSYSNPLL--EDPDETEHASVLIKVKSSIQELVQLYTTRYED---------V----F-GPMINEFIQITWNLLTS 298 (960)
T ss_dssp HHHHHHSCCSCCC--C------CCCHHHHHHHHHHHHHHHHHHHCHH---------H----H-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---------H----H-HHHHHHHHHHHHHHHHH
T ss_conf 9999976899855--57855331327999999999999999999899---------9----9-99999999999999984
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCC
Q ss_conf 418863588999999999982127703366504--219998999864126679213765510989999881574344578
Q 001675 308 IRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYS 385 (1033)
Q Consensus 308 ~~~~~~~~~~~~~~~l~fl~~~v~~~~~~~~~~--~~l~~li~~ii~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s 385 (1033)
..+ .+..++++.++++||+++++.+..++.++ +++..++..+++|+|+++++|++.|++||+||++++.|. +|.++
T Consensus 299 ~~~-~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~-~d~~s 376 (960)
T 1wa5_C 299 ISN-QPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDT 376 (960)
T ss_dssp CCS-CTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----C
T ss_pred CCC-CCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCC-CCCCC
T ss_conf 377-7672899999999999996867689987685189999999968734888878998844999999863575-51237
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCH-----HHHHH
Q ss_conf 888999999999985060109999999999631156898788763568589999999877511289-624-----67999
Q 001675 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PYK-----SELER 459 (1033)
Q Consensus 386 ~R~aa~~ll~~l~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~keaal~~lg~la~~l~~~~-~~~-----~~le~ 459 (1033)
+|.+|.++|..++.++++.+++.+++++.++++++.+++. .+|+.|||+++++|+++++..... ... .++++
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~--~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 1889999999999970132789999999999987366961--21799999999999999874125677412344356999
Q ss_pred HHHHHHCCCCCCC---CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC----
Q ss_conf 9988302267898---651069999999961105668944899999999842899997358979999999997122----
Q 001675 460 MLVQHVFPEFSSP---VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---- 532 (1033)
Q Consensus 460 ~l~~~v~p~l~~~---~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~~~~---- 532 (1033)
|+.++|+|.++++ +|++|+||||++|+|+++. +++.+..+++.++++|.|++++||.+||.||.+|++...
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99997378744998888330398999999988658--9999999999999984899721999999999999844364446
Q ss_pred -----CCCHHHCCHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -----32011100299999999985211--------10149999999999604565443898999999999999840237
Q 001675 533 -----DLNEIRPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEA 599 (1033)
Q Consensus 533 -----~~~~l~p~l~~il~~L~~ll~~~--------~~e~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~ 599 (1033)
.++.+.||++++++.|+.++++. +++.++.++..++..+++++.||+..+++.|...+.+.+++
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~--- 609 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKN--- 609 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTS---
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_conf 65443598756469999999999997146787764322799999999999888861247999999999999999739---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999836889999999999999820588478998776599999997135803579999999999660399999867887
Q 001675 600 DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSL 679 (1033)
Q Consensus 600 d~~~~~~~~~~~~~~l~~i~~ii~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~is~~l~~l 679 (1033)
+ +...+.++++++++.++++ ..|+.+..+++.++|++..+++++..+|.++++++++.++...+.++|.+|++
T Consensus 610 -~----~~~~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 682 (960)
T 1wa5_C 610 -P----SNPRFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPL 682 (960)
T ss_dssp -C----CCHHHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGG
T ss_pred -C----CCCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf -8----9727889999999999963--89536999999999999999986057669999999999997354788999999
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999--9965558524522443211243127212236688605999999999976178999875573547999999972
Q 001675 680 WPLMM--EALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 757 (1033)
Q Consensus 680 ~~~l~--~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~ 757 (1033)
||.++ ..++.. ++++.+.++|.+|+..+++.|.+ ++.+++++.+++.++. . + ..++.++..++.++
T Consensus 683 ~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~-~--~-~~a~~ll~~i~~~~ 750 (960)
T 1wa5_C 683 AQPLLAPNVWELK--GNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKA-Y--E-VHGFDLLEHIMLLI 750 (960)
T ss_dssp HHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTT-T--H-HHHHHHHHHHHHHS
T ss_pred HHHHCCHHHHCCC--CCCHHHHHHHHHHHHHCHHHHHH------HHHHHHHHHHHHCCCC-C--C-CHHHHHHHHHHHHC
T ss_conf 9998099985577--87355899999999768499999------9999999999967994-2--0-35999999999979
Q ss_pred CCC-CHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHC--CHH-HHHHHHHHHHHHHHHHCC
Q ss_conf 567-3010188999999999732344899-99999999976009699999999608--449-999999998999885054
Q 001675 758 KGQ-VDHWVEPYLRITVERLRRAEKSYLK-CLLVQVIADALYYNSSLTLSILHKLG--VAT-EVFNLWFQMLQQVKKNGL 832 (1033)
Q Consensus 758 ~~~-~~~~l~~il~~~l~~l~~~~~~~~~-~~~l~v~~~~~~~~p~~~~~~L~~~~--~~~-~~~~~w~~~~~~~~~~~~ 832 (1033)
++. +.+|++.++..++++++..++..++ ..++.+...+++++|+.+++.+++.+ .+. .+++.|+..++
T Consensus 751 ~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~------- 823 (960)
T 1wa5_C 751 DMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLP------- 823 (960)
T ss_dssp CHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGG-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHH-------
T ss_conf 8777898899999999999831774749999999999999870879999999841605899999998536603-------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 444320024588899988874025589992---35878999999999999999999972000168877689899998889
Q 001675 833 RVNFKREHDKKVCCLGLTSLLALTADQLPG---EALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDD 909 (1033)
Q Consensus 833 ~~~~~~~~d~Kl~~lal~~ll~~~~~~l~~---~~~~~i~~~~~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d 909 (1033)
++.+.+|||++++||++|+..+ ...|+ ..|+.++.++++++.+.+.+.. . +|+++++ |+
T Consensus 824 --~~~~~~erk~~~~gl~~ll~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--------~-----~~~~e~~-d~- 885 (960)
T 1wa5_C 824 --TIGNLLDRKIALIGVLNMVING-QFFQSKYPTLISSTMNSIIETASSQSIANL--------K-----NDYVDLD-NL- 885 (960)
T ss_dssp --GCCSHHHHHHHHHHHHHHHHSC-HHHHHHCGGGHHHHHHHHHHHHHSCSTTCS--------C-----CSCC-------
T ss_pred --HCCCHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCC--------C-----CCCCCCC-CC-
T ss_conf --0167898999999999998651-223035788899999999999708762446--------7-----7533223-21-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHH
Q ss_conf 999997888998777614689999999998423999999999889988877788989888----3679999999999730
Q 001675 910 GDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEV----DPFVFFVDTIKVMQAS 985 (1033)
Q Consensus 910 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~pl~~v----d~~~~~~~~~~~~~~~ 985 (1033)
||.++++..| .+|... + + .-.||+.++ |++.||++++++++++
T Consensus 886 ------------~~~~~~~~~~-~~L~~~--~---------~---------~~~dp~~~i~~~~d~~~~~~~~l~~~~~~ 932 (960)
T 1wa5_C 886 ------------EEISTFGSHF-SKLVSI--S---------E---------KPFDPLPEIDVNNGVRLYVAEALNKYNAI 932 (960)
T ss_dssp ------------CCCCCTTCCC-CCCGGG--C---------C---------CCCCSCTTSCTTTHHHHHHHHHHHHHHHH
T ss_pred ------------CCCCCCCHHH-HHHHHC--C---------C---------CCCCCHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf ------------0012401688-998818--7---------8---------89998344157678899999999997513
Q ss_pred CHHHHHHH-HCCCCHHHHHHHHHHHH
Q ss_conf 90889998-63799999999999999
Q 001675 986 DPLRFQNL-TQTLEFQYQALANGVAQ 1010 (1033)
Q Consensus 986 ~~~~~~~l-~~~l~~~~~~~l~~~~~ 1010 (1033)
+|++|+.+ .++|++++++.|+++++
T Consensus 933 ~~~~~~~l~~~~l~~~~~~~l~~~~~ 958 (960)
T 1wa5_C 933 SGNTFLNTILPQLTQENQVKLNQLLV 958 (960)
T ss_dssp TTSCHHHHHGGGSCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 97248899861699999999999872
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=461.02 Aligned_cols=809 Identities=15% Similarity=0.181 Sum_probs=594.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 478999999823999888999999999720798719999999871-2768024699999999878411798888868999
Q 001675 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVD-NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (1033)
Q Consensus 3 ~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~-~~~~~~vRq~Aai~lKn~i~~~W~~~~~~~~~~i 81 (1033)
.++|.++|++++|||+++|++||++|++++.+|+|..+|+.++.+ .+.+..+|++|+++|||.|+++|.. +
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~--------~ 83 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN--------F 83 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG--------C
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC--------C
T ss_conf 99999999987394989999999999998709988999999985668898679999999999989874477--------9
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHCCCC
Q ss_conf 966799999999989712895889999999999997317999625799999972034---49889999999999704678
Q 001675 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKS 158 (1033)
Q Consensus 82 ~~~~k~~ir~~ll~~l~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~ 158 (1033)
++++|..||+.++++|.++++.||++++.+++.|++.|+|+.||++++.+.+.++++ ..++++.+|..+++.+....
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 84 PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp CHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999874998999999999999999864813568999999998709998999999999999999857875
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 54622799999999899999999984022997239999999999968766513871227923388999999997258999
Q 001675 159 DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVP 238 (1033)
Q Consensus 159 ~~~~~~l~~i~~~~~p~L~~l~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~~l~~~~p 238 (1033)
.. ..+...+..++|.+++. +.+. ...++..+++++..++.. .+..+. ..+..+++.+...++.
T Consensus 164 ~~--~~~~~~~~~il~~l~~~----l~~~-----~~~vR~~A~~aL~~~~~~-~~~~~~--~~~~~~l~~l~~~~~d--- 226 (852)
T 4fdd_A 164 DS--DVLDRPLNIMIPKFLQF----FKHS-----SPKIRSHAVACVNQFIIS-RTQALM--LHIDSFIENLFALAGD--- 226 (852)
T ss_dssp HH--CSSSSCHHHHHHHHTTT----TTCS-----SHHHHHHHHHHHHTTTTT-TCHHHH--TSHHHHHHHHHHHHTC---
T ss_pred CH--HHHCCHHHHHHHHHHHH----HCCC-----CHHHHHHHHHHHHHHHHC-CCHHHH--HHHHHHHHHHHHHCCC---
T ss_conf 63--43133299999999998----5679-----789999999999999864-638799--8899999999987179---
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 99999994664210226899999999999999848989998434999999999739999999999999641886358899
Q 001675 239 SEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRV 318 (1033)
Q Consensus 239 ~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (1033)
.+ ..++++++.++..+...++. +..++++.+++.++..+.. ..+.+
T Consensus 227 -----~~---------~~vr~~a~~~L~~l~~~~~~--------------~~~~~l~~l~~~l~~~~~~------~~~~v 272 (852)
T 4fdd_A 227 -----EE---------PEVRKNVCRALVMLLEVRMD--------------RLLPHMHNIVEYMLQRTQD------QDENV 272 (852)
T ss_dssp -----CC---------HHHHHHHHHHHHHHHHHCHH--------------HHGGGHHHHHHHHHHHHTC------SSHHH
T ss_pred -----CC---------HHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHCCC------CCHHH
T ss_conf -----97---------78999999999999985779--------------8998899999999987069------96899
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999821277033665042199989998641266792137655109899998815743445788889999999999
Q 001675 319 TNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELV 398 (1033)
Q Consensus 319 ~~~~l~fl~~~v~~~~~~~~~~~~l~~li~~ii~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~ 398 (1033)
...+++||..+++.+..++.++|++..++.. +++.|+++++|.+.|+.|+++.- +.|+..+.|++|.+|...+..++
T Consensus 273 r~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~-ll~~l~~~e~d~~~~~~d~~ed~--~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 273 ALEACEFWLTLAEQPICKDVLVRHLPKLIPV-LVNGMKYSDIDIILLKGDVEGGS--GGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTTHHHHHHH-HHHHTSCCHHHHHHHHC--------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999860365798878889889999-99875786767998669844322--24564011169999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 85060109999999999631156898788763568589999999877511289624679999988302267898651069
Q 001675 399 RKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRA 478 (1033)
Q Consensus 399 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~keaal~~lg~la~~l~~~~~~~~~le~~l~~~v~p~l~~~~~~lr~ 478 (1033)
...++.+++.+++++.+.+++ .+|+.|++++.++|.++++..+. +...++.+ ...+++.++++++.+|.
T Consensus 350 ~~~~~~~~~~l~~~l~~~l~~--------~~~~~R~aa~~alg~i~~~~~~~--~~~~l~~~-l~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 350 NVYRDELLPHILPLLKELLFH--------HEWVVKESGILVLGAIAEGCMQG--MIPYLPEL-IPHLIQCLSDKKALVRS 418 (852)
T ss_dssp HHHGGGGHHHHHHHHHHHHTC--------SSHHHHHHHHHHHHHTTTTTHHH--HGGGHHHH-HHHHHHHTTCSSHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHCCHHH--HHHHHHHH-HHHHHHHCCCCCHHHHH
T ss_conf 746187899999999998559--------98899999999999998635688--99879999-99999871799889999
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 99999996110566--8944899999999842899997358979999999997122320111002999999999852111
Q 001675 479 KAAWVAGQYAHINF--SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 556 (1033)
Q Consensus 479 ra~~~l~~~~~~~~--~~~~~~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 556 (1033)
.|||++|++++..- ....++..+++.++..+.|++..||..|+.|+..+++.. ...+.||++.+++.|+.+++..+
T Consensus 419 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~--~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA--CTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH--GGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999886110478999999999999985898889999999999999973--67667679999999999998837
Q ss_pred HHH---HHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-HH
Q ss_conf 014---999999999960456544--389899999999999984023799999836889999999999999820588-47
Q 001675 557 NED---LVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL-PH 630 (1033)
Q Consensus 557 ~e~---l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ii~~~~~~-~~ 630 (1033)
... +..++..++...++.+.. |...+++.|.+ .|+.-.++ ++.+. .++++++.+..+++.. ..
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~----~~~~l~d~-----~~~~~--~~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ----KWNMLKDE-----DKDLF--PLLECLSSVATALQSGFLP 565 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHH----HHHHSCTT-----CTTHH--HHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHCCCC-----CHHHH--HHHHHHHHHHHHHHHHHHH
T ss_conf 4799999999999999742431367899998899999----98733304-----69999--9999999999997486798
Q ss_pred HHHHHHHHHHHHHHHHCC-------------CCCHHHHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 899877659999999713-------------580357999999999966039-9999867--887999999965558524
Q 001675 631 LFVQIEPTLLPIMRRMLT-------------TDGQEVFEEVLEIVSYMTFFS-PTISLEM--WSLWPLMMEALADWAIDF 694 (1033)
Q Consensus 631 ~~~~l~~~~~p~i~~il~-------------~~~~~~~~~~l~ll~~l~~~~-~~is~~l--~~l~~~l~~~~~~~~~~~ 694 (1033)
....+.+.++.++...+. ....++...+++.+..++... ..+.|.+ -.+++.+..++.+...+.
T Consensus 566 ~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~v 645 (852)
T 4fdd_A 566 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHH
T ss_conf 89999999999999999999875338866688761199999999978999874769988367718999999838998449
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCHHHHHHHHHH
Q ss_conf 52244321124312721223668860599999999997617899987557354799999997256730101889999999
Q 001675 695 FPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVE 774 (1033)
Q Consensus 695 l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~ 774 (1033)
......++..+....+..+. .|+..++..+.+.++.. +..-+..++..+..+..+.+..+.||++.++..++.
T Consensus 646 r~~a~~~l~~l~~~~~~~~~-----~~l~~~lp~l~~~l~~~--~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~ 718 (852)
T 4fdd_A 646 RQSSFALLGDLTKACFQHVK-----PCIADFMPILGTNLNPE--FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718 (852)
T ss_dssp HHHHHHHHHHHHHHCGGGTG-----GGHHHHHHHHHHTCCTT--SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998168889-----87999999999876942--068999999999999997117678789999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 997323-4489999999999976009699999999608449999999998999885054444320024588899988874
Q 001675 775 RLRRAE-KSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLL 853 (1033)
Q Consensus 775 ~l~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll 853 (1033)
.+.+.. ...++...+..++++...+|+.+-..+ ..|+..|+..++ +.....+|..+.-|||.++
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l------~~~~~~~~~~l~---------~~~d~~e~~~a~~~l~~li 783 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYVCPQEVAPML------QQFIRPWCTSLR---------NIRDNEEKDSAFRGICTMI 783 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGH------HHHHHHHHHHHH---------TSCSSHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCH------HHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHHH
T ss_conf 8579988720778899999999986889767558------999999999865---------3666079999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 02558999235878999999999999999999972000168877689899998889999997888998777614689999
Q 001675 854 ALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQ 933 (1033)
Q Consensus 854 ~~~~~~l~~~~~~~i~~~~~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~ 933 (1033)
..+++.+.+ .++..+. ++. . |
T Consensus 784 ~~~p~~~~~--------~~~~~~~----~~~--------~-------~-------------------------------- 804 (852)
T 4fdd_A 784 SVNPSGVIQ--------DFIFFCD----AVA--------S-------W-------------------------------- 804 (852)
T ss_dssp HHCGGGTGG--------GHHHHHH----HHH--------T-------C--------------------------------
T ss_pred HHCHHHHHH--------HHHHHHH----HHH--------H-------C--------------------------------
T ss_conf 869186888--------8999999----987--------0-------6--------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCH-HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999998423999999999889988877788989888367999999999973090-8899986379999999999999
Q 001675 934 KLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDP-LRFQNLTQTLEFQYQALANGVA 1009 (1033)
Q Consensus 934 ~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~pl~~vd~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~l~~~~ 1009 (1033)
.+| .-+....|.+.++.++++-+ +.++...++++++.++.|+...
T Consensus 805 -----------------------------~~~--~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 850 (852)
T 4fdd_A 805 -----------------------------INP--KDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFY 850 (852)
T ss_dssp -----------------------------SSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTS
T ss_pred -----------------------------CCC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH
T ss_conf -----------------------------899--7899999999999998767720199998729999999999870
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=423.96 Aligned_cols=739 Identities=11% Similarity=0.144 Sum_probs=477.1
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99478999999823999888999999999720798719999999871276802469999999987841179888886899
Q 001675 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~~~~~~ 80 (1033)
||+++|.+++.++++|++++|++||++|++++++|+++..+.+|+.+. .+..+|++|+++|||.|+++|..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s-~~~~vr~~aa~~Lk~~i~~~W~~-------- 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFS-TNPQSKFIALSILDKLITRKWKL-------- 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHC-SCHHHHHHHHHHHHHHHHHTGGG--------
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCC--------
T ss_conf 659999999999868993899999999999883956999999998629-98899999999999999760704--------
Q ss_pred CCHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH--HHHHHHHHHHH
Q ss_conf 99667999999999897128---------95889999999999997317999625799999972034--49889999999
Q 001675 81 ISQVDKDMVRDHILVFVAQV---------PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (1033)
Q Consensus 81 i~~~~k~~ir~~ll~~l~~~---------~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~ 149 (1033)
+++++|..||+.+++.+... ++.||++++.+++.|+++|||++||++++.+++.++++ ...+++.+|..
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKL 163 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999862776200000289999999999999997681115479999999871585889999999999
Q ss_pred HHHHHC-CCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCC-------
Q ss_conf 999704-6785----46227999999998999999999840229972399999999999687665-1387122-------
Q 001675 150 LSRKYE-FKSD----EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY-LEIPKQL------- 216 (1033)
Q Consensus 150 i~k~~~-~~~~----~~~~~l~~i~~~~~p~L~~l~~~~~~~~~~~~~~~~~~~~~lki~~~~~~-~~lp~~~------- 216 (1033)
+++... ++++ ..+..+...+...+|.++.++.+.+.... ...++..+++++.+++. ...+..+
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~----~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~ 239 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS----SSSLIVATLESLLRYLHWIPYRYIYETNILEL 239 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999872600132689999999999999999999999998668----88999999999999986088998860559999
Q ss_pred ------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH-----------HHHCCCCCCC
Q ss_conf ------79233889999999972589999999999466421022689999999999999-----------9848989998
Q 001675 217 ------LDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLY-----------TRFGDLKLQN 279 (1033)
Q Consensus 217 ------~~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~-----------~~~~~~~~~~ 279 (1033)
.+.+....|+..+..+++...++ .+. +- ..++.+|.-.++..+. .+|+.....+
T Consensus 240 l~~~~l~~~~~~~~a~~~L~~i~~~~~~~----~~~--~~---~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d 310 (1049)
T 3m1i_C 240 LSTKFMTSPDTRAITLKCLTEVSNLKIPQ----DND--LI---KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGND 310 (1049)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHCCCCT----TCH--HH---HHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCC----CHH--HH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCH
T ss_conf 99986898767999999999999488995----034--68---8999999999999998862798541787744577102
Q ss_pred HHH-HHHHHHHH---HHHH---------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHHHH
Q ss_conf 434-99999999---9739---------9999999999996418863588999999999982127----70336650421
Q 001675 280 PEN-RAFAQMFQ---KNYA---------GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS----KNSMYNLLQPR 342 (1033)
Q Consensus 280 ~~~-~~f~~~f~---~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~v~----~~~~~~~~~~~ 342 (1033)
.++ ..+++.|. ..+. .+.+..++..+-..... ..+.+...+++||..+++ .+..+..++++
T Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~ 388 (1049)
T 3m1i_C 311 QSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEI 388 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 899999999999999999999828821479999999999998868--908999999999999999997463589999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99989998641266792137655109899998815743445788889999999999850601099999999996311568
Q 001675 343 LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDE 422 (1033)
Q Consensus 343 l~~li~~ii~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~~~~l~~~i~~~l~~~~~ 422 (1033)
+..++.. +++.|++.+ |.+.+++|+.|++++..++ +|.++.|.++.++|..++..++..+++.+++++.+.++.
T Consensus 389 l~~Lv~~-ll~~m~~~e-d~~~~~dd~~e~~r~~~~d-~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~--- 462 (1049)
T 3m1i_C 389 CSQLRLV-IIENMVRPE-EVLVVENDEGEIVREFVKE-SDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG--- 462 (1049)
T ss_dssp HHHHHHH-HHHTCCCCT-TCCEEECTTSCEEECSSCC-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHH-HHHHCCCCC-CEEEEECCCCCCHHHHHCC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC---
T ss_conf 9999999-998658996-2000057998504865312-227999999999999988369899999999999987277---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9878876356858999999987751128--96246799999883022678---986510699999999611056689448
Q 001675 423 TPVEYKPYRQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQNN 497 (1033)
Q Consensus 423 ~~~~~~~~~~keaal~~lg~la~~l~~~--~~~~~~le~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~~~~~~~ 497 (1033)
+ ..+|+.+||+++++|++++.+.+. +.+...+.+++.. +|++. +++|.+|.++||++|+|+++...++++
T Consensus 463 -~--~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~ 537 (1049)
T 3m1i_C 463 -S--EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF 537 (1049)
T ss_dssp -S--SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH
T ss_pred -C--CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -8--789899999999999986023762557999999999998--77654356654999988999999779999867899
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH--------HCCHHHHHHHHHHHHHHHCHHHHHHHHHHH--
Q ss_conf 9999999984289999735897999999999712232011--------100299999999985211101499999999--
Q 001675 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI--------RPILPQLLDEFFKLMNEVENEDLVFTLETI-- 567 (1033)
Q Consensus 498 ~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~~~~~~~~l--------~p~l~~il~~L~~ll~~~~~e~l~~~l~~i-- 567 (1033)
+..+++.++.+|.+++.+|+..||.|+.+|++.+. ..+ .||++++++.+..++.+.+.+....+++++
T Consensus 538 l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~--~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ 615 (1049)
T 3m1i_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999998618987899999999999999988--9861156778775799999989999985899999999999999
Q ss_pred -HHHHC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf -99604--5654438989999999999998402379999--983688999999999999982058847899877659999
Q 001675 568 -VDKFG--EEMAPYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPI 642 (1033)
Q Consensus 568 -v~~~~--~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~~i~~ii~~~~~~~~~~~~l~~~~~p~ 642 (1033)
+...+ +...++...+++.+.+.+.++..+...+++. +.+.......+++|+..++.+++. .+.|.
T Consensus 616 ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~----------~f~p~ 685 (1049)
T 3m1i_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA----------DFYPQ 685 (1049)
T ss_dssp HHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGG----------GGHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_conf 99759978999999999998899999999998731646404879999999999999999998567----------88999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCC---CCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9997135803579999999999660399---9998678---879999999655585245224432112431272122366
Q 001675 643 MRRMLTTDGQEVFEEVLEIVSYMTFFSP---TISLEMW---SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC 716 (1033)
Q Consensus 643 i~~il~~~~~~~~~~~l~ll~~l~~~~~---~is~~l~---~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~ 716 (1033)
+..++. +...++.....++.......+ .-.|..| .+.|.+.+.+..+. ..+ ++++..+ ..++
T Consensus 686 ~~~i~~-~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~----~~~-~~l~~~~----~~~~-- 753 (1049)
T 3m1i_C 686 LGHIYY-NMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYI----SKA-RNLDDVV----KVLV-- 753 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHH----HHC-SCHHHHH----HHTH--
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC-CCHHHHH----HHHH--
T ss_conf 999999-999999999998999997058502210889999999999999999999----847-9779999----9878--
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q ss_conf 88605999999999976178999875573547999999972567301018899999999973------234489999999
Q 001675 717 KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR------AEKSYLKCLLVQ 790 (1033)
Q Consensus 717 ~~~~~~~~il~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~------~~~~~~~~~~l~ 790 (1033)
++.++.+++.+.+... ...+ ..++.++..++..+++.+.++++.++..++.+.-. ...+.++..++.
T Consensus 754 --~~~l~~ll~~~~~~~~-~~~~----~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ 826 (1049)
T 3m1i_C 754 --EPLLNAVLEDYMNNVP-DARD----AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYK 826 (1049)
T ss_dssp --HHHHHHHHHHHHHSCG-GGCC----THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCC-CCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHH
T ss_conf --9999999998871896-3236----87999999999998876066689999999999999985242108999999999
Q ss_pred HHHHHHHHCHHHHHH
Q ss_conf 999976009699999
Q 001675 791 VIADALYYNSSLTLS 805 (1033)
Q Consensus 791 v~~~~~~~~p~~~~~ 805 (1033)
++.+++..+|..+++
T Consensus 827 ll~~i~~~~~~~l~~ 841 (1049)
T 3m1i_C 827 LLKVINEKSFAAFLE 841 (1049)
T ss_dssp HHHHHHHHCTHHHHH
T ss_pred HHHHHHHHCHHHHHC
T ss_conf 999999867899975
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=416.13 Aligned_cols=726 Identities=13% Similarity=0.145 Sum_probs=477.1
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99478999999823999888999999999720798719999999871276802469999999987841179888886899
Q 001675 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~~~~~~ 80 (1033)
||+++|.+++.++++||++.|++||++|++++++|+++..+++|+.. +.+..+|++|+++|||.|+++|..
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~-------- 74 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHE-------- 74 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCHHH--------
T ss_conf 55999999999876999999999999999987497989999999835-994989999999999999715864--------
Q ss_pred CCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH-------H--HHHHHHHHHH
Q ss_conf 9966799999999989712---89588999999999999731799962579999997203-------4--4988999999
Q 001675 81 ISQVDKDMVRDHILVFVAQ---VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD-------Q--QVYGALFVLR 148 (1033)
Q Consensus 81 i~~~~k~~ir~~ll~~l~~---~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s-------~--~~~~~L~~L~ 148 (1033)
+|+++|..||+.|++.+.+ .++.||++++.+++.|++++|| .||++++.+++.+++ + ....++.+|.
T Consensus 75 l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~ 153 (971)
T 2x1g_F 75 VPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLT 153 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999986799878999999999999997062-24379999999971533456787889999999999
Q ss_pred HHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHH
Q ss_conf 99997-046785462279999999989999999998402299---723999999999996876651-3871227923388
Q 001675 149 ILSRK-YEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNP---SLEVADLIKLICKIFWSSIYL-EIPKQLLDPNVFN 223 (1033)
Q Consensus 149 ~i~k~-~~~~~~~~~~~l~~i~~~~~p~L~~l~~~~~~~~~~---~~~~~~~~~~~lki~~~~~~~-~lp~~~~~~~~l~ 223 (1033)
.++++ ++++....|..+...+...+|.+++++..++..... +.....++..+++|+..++.. .+|.. ...
T Consensus 154 ~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-----~~~ 228 (971)
T 2x1g_F 154 AIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-----GCV 228 (971)
T ss_dssp HHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-----GHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-----CCC
T ss_conf 859988246857899999999998799999999999855467888864236799999999999825783865-----663
Q ss_pred HHHHHHHH----------------------------------HHCCCCCCCCCC-CCH---HHHH-HCCHHHH-H-----
Q ss_conf 99999999----------------------------------725899999999-994---6642-1022689-9-----
Q 001675 224 AWMILFLN----------------------------------VLERPVPSEGEP-ADP---EQRK-SWGWWKV-K----- 258 (1033)
Q Consensus 224 ~w~~~~~~----------------------------------~l~~~~p~~~~~-~d~---~~~~-~~~~~k~-k----- 258 (1033)
.+++.+.. ++..+-+....+ ... .... ...+++. .
T Consensus 229 ~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~ 308 (971)
T 2x1g_F 229 TITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKREND 308 (971)
T ss_dssp HHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCS
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 19999986435530232356655567677479999999999997680113208899999999998689999998565654
Q ss_pred -HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHC
Q ss_conf -9999999999998489899984349999999------997399999999999996418863-58899999999998212
Q 001675 259 -KWTVHILNRLYTRFGDLKLQNPENRAFAQMF------QKNYAGKILECHLNLLNRIRVGGY-LPDRVTNLILQYLSNSI 330 (1033)
Q Consensus 259 -k~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f------~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~fl~~~v 330 (1033)
++....+++++.+|+... ...+...+ ...++..+++.++..... .+.+ ..+.+...+++||+.++
T Consensus 309 ~~~~~~~l~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~~~~~~~~~v~~~~l~fw~~l~ 381 (971)
T 2x1g_F 309 NEDIIVHIYMLFVSSVERH-----STLLLSGITSADPELSILVHRIVQEILHCTDK--PGIYPVEESCSTMALAFWYMLQ 381 (971)
T ss_dssp CSHHHHHHHHHHHHHHHHT-----HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC--SSCTTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 0689999999999999999-----99999873157653549999999999999758--8888863124587899999999
Q ss_pred C----------CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7----------703366504219998999864126679213765510989999881574344578888999999999985
Q 001675 331 S----------KNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRK 400 (1033)
Q Consensus 331 ~----------~~~~~~~~~~~l~~li~~ii~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~ 400 (1033)
+ .+..+..++|++..++..++.+....++++.+.| |++| + +++.+.|.++.+++..++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~--d~~e--~------~~f~~~R~~~~~~l~~~~~~ 451 (971)
T 2x1g_F 382 DEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW--SSDD--L------ECFRCYRQDISDTFMYCYDV 451 (971)
T ss_dssp HHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS--CHHH--H------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CHHH--H------HHHHHHHHHHHHHHHHHHHH
T ss_conf 999741331000899999999999999999998619996243356--7757--9------99999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHH
Q ss_conf 0601099999999996311568987887635685899999998775112896246799999883022678--98651069
Q 001675 401 RGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS--SPVGHLRA 478 (1033)
Q Consensus 401 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~keaal~~lg~la~~l~~~~~~~~~le~~l~~~v~p~l~--~~~~~lr~ 478 (1033)
+++.+++.+++++.+.++++..++ .+|+.+||+++++|++++++.+.. ...++.++. +++.+. +++|.+|.
T Consensus 452 ~~~~~l~~~~~~l~~~l~~~~~~~---~~w~~~eaal~~l~~iae~~~~~~--~~~l~~l~~--~l~~l~~~d~~~~vr~ 524 (971)
T 2x1g_F 452 LNDYILEILAAMLDEAIADLQRHP---THWTKLEACIYSFQSVAEHFGGEE--KRQIPRLMR--VLAEIPYEKLNVKLLG 524 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHTTTC--------CHHHHHHH--HHHHSCTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHH--HHHHCCCCCCCHHHHH
T ss_conf 709999999999999997346898---738999999999999983548033--477999999--9985676536789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH--HC
Q ss_conf 9999999611056689448999999998428999973589799999999971223201110029999999998521--11
Q 001675 479 KAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--VE 556 (1033)
Q Consensus 479 ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~~ 556 (1033)
++||++|+|+++...+++++..+++.++..| + .+|+..||.|+..|++.+ ...+.||++++++.++.+++. .+
T Consensus 525 ~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~ 599 (971)
T 2x1g_F 525 TALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMK 599 (971)
T ss_dssp HHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-C--HHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999999878888608898999999999874-8--588999999999999998--8862300799999999997278999
Q ss_pred HHHHHHHHHH---HHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC----
Q ss_conf 0149999999---999604-56544389899999999999984023799999836889999999999999820588----
Q 001675 557 NEDLVFTLET---IVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL---- 628 (1033)
Q Consensus 557 ~e~l~~~l~~---iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ii~~~~~~---- 628 (1033)
.+....++++ ++...+ ++..||...+++.+.+.+.++.++...+ ++.......++++++.++++++..
T Consensus 600 ~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~----~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 675 (971)
T 2x1g_F 600 NSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT----PAARIRTIFRLNMISTLFSSLNTDVDEQ 675 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C----HHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 289999999999999729999999999999989999999998568998----2259999999999999984167776853
Q ss_pred ------HHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------4789987765999999971358--035799999999996603-9999986788799999996555852452244
Q 001675 629 ------PHLFVQIEPTLLPIMRRMLTTD--GQEVFEEVLEIVSYMTFF-SPTISLEMWSLWPLMMEALADWAIDFFPNIL 699 (1033)
Q Consensus 629 ------~~~~~~l~~~~~p~i~~il~~~--~~~~~~~~l~ll~~l~~~-~~~is~~l~~l~~~l~~~~~~~~~~~l~~~~ 699 (1033)
++.+..+.+.++|++..+++.. ..++.+.++.++..++.. ...+.|.++.+++.+...+..... ...+
T Consensus 676 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l 752 (971)
T 2x1g_F 676 ATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTL 752 (971)
T ss_dssp --------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC---HHHH
T ss_conf 3345678836999999999999999864363789999999999999861440425278999999999866883---4999
Q ss_pred HHHHHHHCC-CCCC-CCCCCCCCHHHHHHHHHHHHHCCC---CC-CCCC-CCCHHHHHHHHHHHCCCCC--HHC-HHHHH
Q ss_conf 321124312-7212-236688605999999999976178---99-9875-5735479999999725673--010-18899
Q 001675 700 VPLDNYISR-GTAH-FLTCKEPDYQQSLWSMVSSIMADK---NL-EDGD-IEPAPKLIEVVFQNCKGQV--DHW-VEPYL 769 (1033)
Q Consensus 700 ~~L~~~i~~-~~~~-~l~~~~~~~~~~il~~~~~~l~~~---~~-~~~~-~~~a~~ll~~ii~~~~~~~--~~~-l~~il 769 (1033)
.++...+.. |.+. ... .-.+.+..++.-+..+++.. .. +..| ....+.++..++.+++..+ .+. ++.++
T Consensus 753 ~l~~~~i~~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~ 831 (971)
T 2x1g_F 753 EISKTAIVMFFKDEGCKP-LMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLV 831 (971)
T ss_dssp HHHHHHHTTCCC-----H-HHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHH
T ss_conf 999999999588900589-9999999999999999860654677648448999999999999868599818821289999
Q ss_pred HHHHHHHHH
Q ss_conf 999999973
Q 001675 770 RITVERLRR 778 (1033)
Q Consensus 770 ~~~l~~l~~ 778 (1033)
..++..+..
T Consensus 832 ~~~~~~l~~ 840 (971)
T 2x1g_F 832 FYAQRGMTL 840 (971)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHCCC
T ss_conf 999998287
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=404.63 Aligned_cols=736 Identities=13% Similarity=0.177 Sum_probs=477.8
Q ss_pred CCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 994789999998-2399988899999999972079871999999987127680246999999998784117988888689
Q 001675 1 MDLPSLALILQG-ALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (1033)
Q Consensus 1 Md~~~L~~~L~~-tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~~~~~ 79 (1033)
||+++|.+++.+ ..++|++.|++||++|++++++|+++..+++|+.+ +.+..+|++|+++|||.|+++|..
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~------- 92 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSD------- 92 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGG-------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCHHH-------
T ss_conf 559999999999835979899999999999984699999999998657-972588999999999999738874-------
Q ss_pred CCCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH------H--HHHHHHHHHH
Q ss_conf 99966799999999989712---89588999999999999731799962579999997203------4--4988999999
Q 001675 80 KISQVDKDMVRDHILVFVAQ---VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD------Q--QVYGALFVLR 148 (1033)
Q Consensus 80 ~i~~~~k~~ir~~ll~~l~~---~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s------~--~~~~~L~~L~ 148 (1033)
+|+++|..||+.|++.+.+ .++.||++++.+++.|+++|||++||++++.+++.+++ + ....++.+|.
T Consensus 93 -l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 93 -IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp -SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf -9999999999999999998748988999999999999998748311555999999998643357874788999999998
Q ss_pred HHHHHHC-CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC------------
Q ss_conf 9999704-678-54622799999999899999999984022997239999999999968766513871------------
Q 001675 149 ILSRKYE-FKS-DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK------------ 214 (1033)
Q Consensus 149 ~i~k~~~-~~~-~~~~~~l~~i~~~~~p~L~~l~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~------------ 214 (1033)
.++++.. .+. .+.|..+...+...+|.+++++..++.....+ ..++..+++|+.+++..+.+.
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~---~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~ 248 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSP---SCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFA 248 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCC---HHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHH
T ss_pred HCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 68998850658699999999999987889999999998277880---579999999999998289985341689999999
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHH-----------HH----HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 22792338899999999725899999999994664210226-----------89----9999999999999848989998
Q 001675 215 QLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWW-----------KV----KKWTVHILNRLYTRFGDLKLQN 279 (1033)
Q Consensus 215 ~~~~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~-----------k~----kk~~~~~l~~l~~~~~~~~~~~ 279 (1033)
.+.+.+....|+..+..++....++. ..+ ....++ +. ..|..+.+++++.+|+..
T Consensus 249 ~l~~~~~~~~a~~~l~~i~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~---- 318 (963)
T 2x19_B 249 ALQDSELFDSSVEAIVNAISQPDAQR---YVN---TLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGEN---- 318 (963)
T ss_dssp HTTSTTTHHHHHHHHHHHHTCTTGGG---CHH---HHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCC---CHH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
T ss_conf 86796479999999999975311245---779---99999999974079999999877989999999999999998----
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HH-CCCC-CCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHH
Q ss_conf 43499999999973-99999999999996-41-8863-5889999999999821277---------03366504219998
Q 001675 280 PENRAFAQMFQKNY-AGKILECHLNLLNR-IR-VGGY-LPDRVTNLILQYLSNSISK---------NSMYNLLQPRLDVL 346 (1033)
Q Consensus 280 ~~~~~f~~~f~~~~-~~~~~~~~~~~l~~-~~-~~~~-~~~~~~~~~l~fl~~~v~~---------~~~~~~~~~~l~~l 346 (1033)
+ ...+.... .+..+..+++.+-. .. .+.| ..+.+...+++||..+++. +..+..++|++..+
T Consensus 319 --~---~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 393 (963)
T 2x19_B 319 --H---SRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQL 393 (963)
T ss_dssp --H---HHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred --H---HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --6---99997375565899999999999975888887203454412999999999998623444578899999999999
Q ss_pred HHHHHHHCCCCCHHH-HHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999864126679213-7655109899998815743445788889999999999850601099999999996311568987
Q 001675 347 LFEIVFPLMCFNDND-QKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPV 425 (1033)
Q Consensus 347 i~~ii~p~l~l~~~d-~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 425 (1033)
+..++ +.|...+++ .+.|++|+. +++.+.|.++.+++..++...++.+++.+++++.+.++++..
T Consensus 394 ~~~ll-~~~~~p~~~~~~~~~~de~----------~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~--- 459 (963)
T 2x19_B 394 VDVLL-HKAQFPSDEEYGFWSSDEK----------EQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEE--- 459 (963)
T ss_dssp HHHHH-HHHSCCCHHHHHTSCHHHH----------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHH-HHHCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_conf 99999-9980998302267776389----------999999999999999999970689999999999999972579---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 88763568589999999877511289624679999988302267898651069999999961105668944899999999
Q 001675 426 EYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSV 505 (1033)
Q Consensus 426 ~~~~~~~keaal~~lg~la~~l~~~~~~~~~le~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l 505 (1033)
..+|+.+||+++++|++++++.+.. ...+..++. +++.+.+++|.+|.++||++|+|+++...+++++..+++.+
T Consensus 460 -~~~w~~~eaal~al~~i~~~~~~~~--~~~l~~l~~--~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l 534 (963)
T 2x19_B 460 -PYSWQHTEALLYGFQSIAETIDVNY--SDVVPGLIG--LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLV 534 (963)
T ss_dssp -SCCHHHHHHHHHHHHHHTTSCCSSC--CSHHHHHHH--HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHH--HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf -9866799899999999970438224--678999999--99857998589999999999988888875889899999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH--HCHHH---HHHHHHHHHHHHC-CCCCCCH
Q ss_conf 8428999973589799999999971223201110029999999998521--11014---9999999999604-5654438
Q 001675 506 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--VENED---LVFTLETIVDKFG-EEMAPYA 579 (1033)
Q Consensus 506 ~~~L~d~~~~Vr~~A~~al~~~~~~~~~~~~l~p~l~~il~~L~~ll~~--~~~e~---l~~~l~~iv~~~~-~~i~p~~ 579 (1033)
+..|++ .+|+..||.|+..+++.+ +..+.||++++++.|..+++. .+.+. +..++..++...+ ++..||.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHCC--CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 987178--468999999999999998--9987766999999999986357898488999999999999629999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHH
Q ss_conf 989999999999998402379999983688999999999999982058-------------------8478998776599
Q 001675 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-------------------LPHLFVQIEPTLL 640 (1033)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ii~~~~~-------------------~~~~~~~l~~~~~ 640 (1033)
..+++.+.+.+..+.++.. + ++........+++++.++++++. .+..+..+.+.++
T Consensus 611 ~~l~~~l~~~l~~~~~~~~-~----~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEIP-N----PSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF 685 (963)
T ss_dssp HHHHHHHHHHHHHHHSSCS-C----HHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-C----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999899999999982789-8----7789999999999999997748986433222322124777788994699999999
Q ss_pred HHHHHHCCCC--CHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCC
Q ss_conf 9999971358--0357999999999966039-99998678879999999655585245224432112431--27212236
Q 001675 641 PIMRRMLTTD--GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYIS--RGTAHFLT 715 (1033)
Q Consensus 641 p~i~~il~~~--~~~~~~~~l~ll~~l~~~~-~~is~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~--~~~~~~l~ 715 (1033)
|++..+++.. ..+..+.++.++..++... ..+.|.+..+++.+...+.. ...+..+.++..++. ...+.+..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST---IPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH---SCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999856674689999999999999750103424079999999999875---7850899999999998577801378
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHCCCCC--HHC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688605999999999976178999875-5735479999999725673--010-188999999999732344899999999
Q 001675 716 CKEPDYQQSLWSMVSSIMADKNLEDGD-IEPAPKLIEVVFQNCKGQV--DHW-VEPYLRITVERLRRAEKSYLKCLLVQV 791 (1033)
Q Consensus 716 ~~~~~~~~~il~~~~~~l~~~~~~~~~-~~~a~~ll~~ii~~~~~~~--~~~-l~~il~~~l~~l~~~~~~~~~~~~l~v 791 (1033)
.-++.++.++.....+++..-.+..+ ....+.++..++.+++..+ .+. +..++..++..+.. .........+.+
T Consensus 763 -~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~l~~ 840 (963)
T 2x19_B 763 -PIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF-PEAPTVKASCGF 840 (963)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC-SCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_conf -999999999999999986276558638999999999999758398729851479999999997578-977999999999
Q ss_pred HHHHH
Q ss_conf 99976
Q 001675 792 IADAL 796 (1033)
Q Consensus 792 ~~~~~ 796 (1033)
+..++
T Consensus 841 l~~l~ 845 (963)
T 2x19_B 841 FTELL 845 (963)
T ss_dssp HHHHG
T ss_pred HHHHH
T ss_conf 99998
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=402.72 Aligned_cols=692 Identities=13% Similarity=0.209 Sum_probs=484.4
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC--
Q ss_conf 9947899999982-399988899999999972079--87199999998712768024699999999878411798888--
Q 001675 1 MDLPSLALILQGA-LSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-- 75 (1033)
Q Consensus 1 Md~~~L~~~L~~t-ls~d~~~r~~AE~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~-- 75 (1033)
||+++|.++|.++ +|||+++|++||++|++++++ |+|+..|++++.+.+.+..+|++|+++|||.|+++|....+
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98779999999742693979999999999999851999999999999837899867999999998702257574878999
Q ss_pred -CCCCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCHH----HHHHHHHHHH
Q ss_conf -86899-99667999999999897128958899999999999973179-99625799999972034----4988999999
Q 001675 76 -NEQQK-ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLR 148 (1033)
Q Consensus 76 -~~~~~-i~~~~k~~ir~~ll~~l~~~~~~ir~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~----~~~~~L~~L~ 148 (1033)
..|.. +++++|..||+.+++.+.+++..+|++++.+++.|++.+|| +.||++++.+++.++++ ..++++.++.
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~ 160 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG 160 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 97676629999999999999998779963799999999999998467645549999999998726897899999999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99997046785462279999999989999999998402299723999999999996876651387122792338899999
Q 001675 149 ILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMIL 228 (1033)
Q Consensus 149 ~i~k~~~~~~~~~~~~l~~i~~~~~p~L~~l~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~ 228 (1033)
.+++.+.. +.+ .+......+++.+. ..+.+..+ ...++..+++++..++.. +...+.........++.
T Consensus 161 ~l~~~~~~---~~~-~~~~~~~~ll~~l~----~~l~~~~~---~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~ll~~ 228 (861)
T 2bpt_A 161 YMCESADP---QSQ-ALVSSSNNILIAIV----QGAQSTET---SKAVRLAALNALADSLIF-IKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHTSST---TSS-TTGGGHHHHHHHHH----HHHSTTCC---CHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHH
T ss_pred HHHHCCCH---HHH-HHHHHHHHHHHHHH----HHHCCCCC---CHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHH
T ss_conf 99972784---356-78988999999999----84157999---878999999999999999-99870676689999999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 9997258999999999946642102268999999999999998489899984349999999997399-999999999996
Q 001675 229 FLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNLLNR 307 (1033)
Q Consensus 229 ~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~-~~~~~~~~~l~~ 307 (1033)
+...++. . .|++++++++++..+...++.. + .++++ .+++.++..+.
T Consensus 229 l~~~~~~--------~---------~~~~r~~a~~~l~~l~~~~~~~------~--------~~~l~~~l~~~~~~~~~- 276 (861)
T 2bpt_A 229 VCEATQA--------E---------DIEVQAAAFGCLCKIMSKYYTF------M--------KPYMEQALYALTIATMK- 276 (861)
T ss_dssp HHHHHTC--------S---------CHHHHHHHHHHHHHHHHHHGGG------C--------HHHHHHTHHHHHHHHTT-
T ss_pred HHHHHCC--------C---------CHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHHHHC-
T ss_conf 9998659--------9---------8899999999999999998899------9--------99889999999999873-
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCHHHH---------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHH
Q ss_conf 41886358899999999998212770336---------------650421999899986412667921376551098999
Q 001675 308 IRVGGYLPDRVTNLILQYLSNSISKNSMY---------------NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEY 372 (1033)
Q Consensus 308 ~~~~~~~~~~~~~~~l~fl~~~v~~~~~~---------------~~~~~~l~~li~~ii~p~l~l~~~d~e~we~Dp~ef 372 (1033)
. ..+.+...+++||..+++..... +.+++.+..++..++ ..| ++.+. |
T Consensus 277 ---~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll-~~l--~~~~~-----d---- 339 (861)
T 2bpt_A 277 ---S--PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL-NLL--TRQNE-----D---- 339 (861)
T ss_dssp ---C--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH-HHT--TCCCC-----C----
T ss_pred ---C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHH--HHCCC-----C----
T ss_conf ---7--72789999999999999878864333210357732569999999988999999-998--70665-----3----
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98815743445788889999999999850601099999999996311568987887635685899999998775112896
Q 001675 373 VRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP 452 (1033)
Q Consensus 373 i~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~keaal~~lg~la~~l~~~~~ 452 (1033)
..++.+++|.+|..++..++..+++.+++.+++++.+.+++ .+|+.|++++.++|.+++..... .
T Consensus 340 ------~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~~-~ 404 (861)
T 2bpt_A 340 ------PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA--------DNWRNREAAVMAFGSIMDGPDKV-Q 404 (861)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCHH-H
T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHCCCCHH-H
T ss_conf ------01246868999999999999874086899999999987579--------97269999999999998599878-8
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 246799999883022678986510699999999611056---68944899999999842899997358979999999997
Q 001675 453 YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 529 (1033)
Q Consensus 453 ~~~~le~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~---~~~~~~~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~ 529 (1033)
+...++.+ ...+++.+.++++.+|.+++|++|+++... +.+..++..+++.++..+.++ ..||..||.++..++.
T Consensus 405 ~~~~l~~i-l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 405 RTYYVHQA-LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHH-HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_conf 89989999-999998828995999999999999999873540487888999999999976447-2899999999999998
Q ss_pred HCC--CCCHHHCCHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH--CCCC
Q ss_conf 122--3201110029999999998521110-----149999999999604565443898999999999999840--2379
Q 001675 530 ACR--DLNEIRPILPQLLDEFFKLMNEVEN-----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT--AEAD 600 (1033)
Q Consensus 530 ~~~--~~~~l~p~l~~il~~L~~ll~~~~~-----e~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~--~~~d 600 (1033)
... ..+.+.||++.+++.|+.++...+. .....++..++...++++.||...+++.+.+.+.+...- ....
T Consensus 483 ~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp HHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 62313542468999999999999985758615899999999999999762656999999999999999988753201388
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHCC-CCCCHHHHH
Q ss_conf 9999836889999999999999820588478998776599999997135803-57999999999966039-999986788
Q 001675 601 EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS-PTISLEMWS 678 (1033)
Q Consensus 601 ~~~~~~~~~~~~~~l~~i~~ii~~~~~~~~~~~~l~~~~~p~i~~il~~~~~-~~~~~~l~ll~~l~~~~-~~is~~l~~ 678 (1033)
+.+.+........++++++.++..++.. +..+.+.++|.+..+++.... ...+.++..+..++... ..+.|.+..
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~ 639 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSS---VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET 639 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGG---TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5567779999999999999999985563---4789999999999997467887579999999999999976609999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 79999999655585245224432112431272122366886059999999999761789998755735479999999725
Q 001675 679 LWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCK 758 (1033)
Q Consensus 679 l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~ 758 (1033)
++|.+.+.+.+.........+.++..++....+.+. ++...++..+.+.+.+...+..-...++..+..++..++
T Consensus 640 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFR-----RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGH-----HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999886556678999999999999987454031-----119999999999727865567665999999999999840
Q ss_pred CCCHHCHHHHHHHHHHHHHH
Q ss_conf 67301018899999999973
Q 001675 759 GQVDHWVEPYLRITVERLRR 778 (1033)
Q Consensus 759 ~~~~~~l~~il~~~l~~l~~ 778 (1033)
+.+.+|++.++..++..+..
T Consensus 715 ~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 715 ADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 50899999999999999736
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=356.95 Aligned_cols=685 Identities=14% Similarity=0.187 Sum_probs=469.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC---CCCC
Q ss_conf 899999982399988899999999972079--87199999998712768024699999999878411798888---8689
Q 001675 5 SLALILQGALSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP---NEQQ 79 (1033)
Q Consensus 5 ~L~~~L~~tls~d~~~r~~AE~~L~~~~~~--p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~---~~~~ 79 (1033)
+|.++|++++|||+++|++||++|+++..+ |+|+..|++++.+.+.+..+|++|+++|||.+...|..... ..|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHH
Q ss_conf 999667999999999897128958899999999999973179-99625799999972034-----498899999999997
Q 001675 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-----QVYGALFVLRILSRK 153 (1033)
Q Consensus 80 ~i~~~~k~~ir~~ll~~l~~~~~~ir~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~s~-----~~~~~L~~L~~i~k~ 153 (1033)
.++++.|..||+.+++++.+++..+ ++++.+++.|++.++| +.||++++.+.+.++++ ...+++.++..+++.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6999999999999999867994788-999999999998467622568899999998708898799999999999999874
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 04678546227999999998999999999840229972399999999999687665138712279233889999999972
Q 001675 154 YEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVL 233 (1033)
Q Consensus 154 ~~~~~~~~~~~l~~i~~~~~p~L~~l~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~~l 233 (1033)
+. ++ .+ ...++.++..+.+.+..+.+ ...++..+++++..+... ++..+.........++.+...+
T Consensus 161 ~~---~~---~~----~~~~~~ll~~l~~~l~~~~~---~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~ 226 (876)
T 1qgr_A 161 ID---PE---QL----QDKSNEILTAIIQGMRKEEP---SNNVKLAATNALLNSLEF-TKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp SC---HH---HH----GGGHHHHHHHHHHHHSTTCS---CHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHHHHHHT
T ss_pred CC---HH---HH----HHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 58---76---67----86799999999986167999---889999999999999999-9998871789999999999871
Q ss_pred CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCC
Q ss_conf 58999999999946642102268999999999999998489899984349999999997399-99999999999641886
Q 001675 234 ERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNLLNRIRVGG 312 (1033)
Q Consensus 234 ~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~-~~~~~~~~~l~~~~~~~ 312 (1033)
. ..+ +++++.+++++..+..+++. .. .+++. .+++.++....
T Consensus 227 ~--------~~~---------~~vr~~a~~~l~~l~~~~~~------~~--------~~~~~~~l~~~~~~~~~------ 269 (876)
T 1qgr_A 227 Q--------CPD---------TRVRVAALQNLVKIMSLYYQ------YM--------ETYMGPALFAITIEAMK------ 269 (876)
T ss_dssp T--------CSS---------HHHHHHHHHHHHHHHHHSGG------GC--------HHHHTTTHHHHHHHHHT------
T ss_pred C--------CCC---------HHHHHHHHHHHHHHHHHHHH------HH--------HHHHHHHHHHHHHHHHC------
T ss_conf 7--------998---------89999999999999998699------99--------98877899999999963------
Q ss_pred CCCHHHHHHHHHHHHHHCCCHH-------------------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHH
Q ss_conf 3588999999999982127703-------------------366504219998999864126679213765510989999
Q 001675 313 YLPDRVTNLILQYLSNSISKNS-------------------MYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYV 373 (1033)
Q Consensus 313 ~~~~~~~~~~l~fl~~~v~~~~-------------------~~~~~~~~l~~li~~ii~p~l~l~~~d~e~we~Dp~efi 373 (1033)
...+.+...+++||..+++... .+...++++..++.. ++..+.-.++ |
T Consensus 270 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-ll~~l~~~~~-------d----- 336 (876)
T 1qgr_A 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI-LTQTLTKQDE-------N----- 336 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH-HHHHTTCCCS-------S-----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHCCCC-------C-----
T ss_conf 87349999999999999887876766510011247775420189999989887079-9987531334-------4-----
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88157434457888899999999998506010999999999963115689878876356858999999987751128962
Q 001675 374 RKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY 453 (1033)
Q Consensus 374 ~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~keaal~~lg~la~~l~~~~~~ 453 (1033)
.| ++.|++|.+|..++..++...++.+++.+++++.+.++. .+|+.|+++++++|.++..+... .+
T Consensus 337 ---~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~~-~~ 402 (876)
T 1qgr_A 337 ---DD--DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN--------PDWRYRDAAVMAFGCILEGPEPS-QL 402 (876)
T ss_dssp ---CC--TTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCHH-HH
T ss_pred ---CC--CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHCCCCHH-HH
T ss_conf ---45--452179999999999999877586699999999988469--------98289999999999997488777-89
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4679999988302267898651069999999961105668---9448999999998428999973589799999999971
Q 001675 454 KSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (1033)
Q Consensus 454 ~~~le~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~~~---~~~~~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~~ 530 (1033)
...+.. +.+.+++.++++++.+|.+|||++|+|+...-. ...++..+++.++..+.++ ..||..|+.++..++..
T Consensus 403 ~~~~~~-~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 403 KPLVIQ-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
T ss_conf 999999-9999999867997899999999999999857201144777999999999987588-88999999999999998
Q ss_pred CC------------CCCHHHCCHHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 22------------3201110029999999998521110------14999999999960456544389899999999999
Q 001675 531 CR------------DLNEIRPILPQLLDEFFKLMNEVEN------EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWR 592 (1033)
Q Consensus 531 ~~------------~~~~l~p~l~~il~~L~~ll~~~~~------e~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~ 592 (1033)
.. ..+.+.||++.++..|+.++...+. .....++..++...+.+..|+...+++.+...+..
T Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 560 (876)
T 1qgr_A 481 AYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ 560 (876)
T ss_dssp HHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 50201234444555403215769999999999972767420469999999999999977431189999999999999999
Q ss_pred HHHHCCCCCCCCCHHH---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHH
Q ss_conf 9840237999998368---8999999999999982058847899877659999999713580--3579999999999660
Q 001675 593 CMNTAEADEDADDPGA---LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG--QEVFEEVLEIVSYMTF 667 (1033)
Q Consensus 593 ~~~~~~~d~~~~~~~~---~~~~~~l~~i~~ii~~~~~~~~~~~~l~~~~~p~i~~il~~~~--~~~~~~~l~ll~~l~~ 667 (1033)
...-.. ....++++. .....++.+++.++..++. ..+..+.+.++|.+..++.... ....+.++..+..++.
T Consensus 561 ~~~~~~-~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~ 637 (876)
T 1qgr_A 561 VLQMES-HIQSTSDRIQFNDLQSLLCATLQNVLRKVQH--QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVE 637 (876)
T ss_dssp HHTTTT-SCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 998871-2488635999999999999999999998285--4205789999999999998536888850899999999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 39-999986788799999996555-8524522443211243127212236688605999999999976178999875573
Q 001675 668 FS-PTISLEMWSLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEP 745 (1033)
Q Consensus 668 ~~-~~is~~l~~l~~~l~~~~~~~-~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~ 745 (1033)
.. ..+.|.+..++|.+...+.+. ..+.....+.++...+....+.+. ++...++..+.+.+.+...+..-...
T Consensus 638 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~l~~~~~~~~~~~~ 712 (876)
T 1qgr_A 638 VLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-----PFCDEVMQLLLENLGNENVHRSVKPQ 712 (876)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHHHHHTCTTSCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9876099999999999999875865087999999999999998878546-----45999999999974871233876399
Q ss_pred HHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHH
Q ss_conf 547999999972567301018899999999973
Q 001675 746 APKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (1033)
Q Consensus 746 a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~ 778 (1033)
++..+..+...+++.+.+|++.++..+...+..
T Consensus 713 ~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~ 745 (876)
T 1qgr_A 713 ILSVFGDIALAIGGEFKKYLEVVLNTLQQASQA 745 (876)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999970352799999999999999855
No 8
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=339.89 Aligned_cols=740 Identities=13% Similarity=0.154 Sum_probs=428.8
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99478999999823999888999999999720798719999999871276802469999999987841179888886899
Q 001675 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~~~~~~ 80 (1033)
||++.|.+++.+.++|+++.|++|+++|++++++|+++..+.+++.++ .+..+|++|+++|||.|+++|..
T Consensus 13 ~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-~~~~vR~faa~~Lk~~I~~~W~~-------- 83 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFS-TNPQSKFIALSILDKLITRKWKL-------- 83 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHC-CCHHHHHHHHHHHHHHHHHHGGG--------
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHC--------
T ss_conf 999999999999849995999999999999871954888999995389-98899999999999999761112--------
Q ss_pred CCHHHHHHHHHHHHHHHHC---C------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH--HHHHHHHHHHH
Q ss_conf 9966799999999989712---8------95889999999999997317999625799999972034--49889999999
Q 001675 81 ISQVDKDMVRDHILVFVAQ---V------PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (1033)
Q Consensus 81 i~~~~k~~ir~~ll~~l~~---~------~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~ 149 (1033)
+|+++|..||+.+++.+.. . ++.++++++.+++.|++++||+.||++++.+++.++++ ....+|.+|..
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~ 163 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKL 163 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999986578522223199999999999999998573323289999999856997789999999999
Q ss_pred HHHHH-CCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCC-------
Q ss_conf 99970-46785----46227999999998999999999840229972399999999999687665-1387122-------
Q 001675 150 LSRKY-EFKSD----EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY-LEIPKQL------- 216 (1033)
Q Consensus 150 i~k~~-~~~~~----~~~~~l~~i~~~~~p~L~~l~~~~~~~~~~~~~~~~~~~~~lki~~~~~~-~~lp~~~------- 216 (1033)
+.++. .+.+. ..+..+...+...+|.+++++...+.... + ..+...+++++.+++. ..+....
T Consensus 164 L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-~---~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~ 239 (1023)
T 4hat_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-S---SSLIVATLESLLRYLHWIPYRYIYETNILEL 239 (1023)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-S---CHHHHHHHHHHHHHTTTSCTHHHHSSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C---HHHHHHHHHHHHHHHHHCCHHHHCCHHHHHH
T ss_conf 99999871000015999888999999989999999999982789-8---8999999999999998489987514449999
Q ss_pred ------CCHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHHHCCHHHHHHHHHHHH-HH-------HHHHHCCCCCCCH
Q ss_conf ------79233889999999972589999999999--46642102268999999999-99-------9998489899984
Q 001675 217 ------LDPNVFNAWMILFLNVLERPVPSEGEPAD--PEQRKSWGWWKVKKWTVHIL-NR-------LYTRFGDLKLQNP 280 (1033)
Q Consensus 217 ------~~~~~l~~w~~~~~~~l~~~~p~~~~~~d--~~~~~~~~~~k~kk~~~~~l-~~-------l~~~~~~~~~~~~ 280 (1033)
.+++....-+..+..+++...| .+ ..+.. .+.+-..++..+ .. +..+|.....-+.
T Consensus 240 l~~~~L~~~~~r~~A~ecL~eIv~~~~~-----~~~~~~~~~---l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~ 311 (1023)
T 4hat_C 240 LSTKFMTSPDTRAITLKCLTEVSNLKIP-----QDNDLIKRQ---TVLFFQNTLQQIATSVMPVTADLKATYANANGNDQ 311 (1023)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHTSCCC-----SSCHHHHHH---HHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCC-----CCHHHHHHH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHH
T ss_conf 9998769878899999999999804257-----855778899---99999999999999737974128999862663119
Q ss_pred HH-HHHHHHH---HHHHH---------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCH----HHHHHHHHHH
Q ss_conf 34-9999999---99739---------999999999999641886358899999999998212770----3366504219
Q 001675 281 EN-RAFAQMF---QKNYA---------GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKN----SMYNLLQPRL 343 (1033)
Q Consensus 281 ~~-~~f~~~f---~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~v~~~----~~~~~~~~~l 343 (1033)
++ ..++..| ...+. .+++...+..+-.... .....+...+++||....+.- ..+..++|.+
T Consensus 312 e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~--~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~ 389 (1023)
T 4hat_C 312 SFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSK--IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC 389 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 9999999999999999999986791035899999999998618--99288999999999999999985657888899999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCC---CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99899986412667921376551098999988157434---457888899999999998506010999999999963115
Q 001675 344 DVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIE---DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY 420 (1033)
Q Consensus 344 ~~li~~ii~p~l~l~~~d~e~we~Dp~efi~~~~d~~~---d~~s~R~aa~~ll~~l~~~~~~~~~~~l~~~i~~~l~~~ 420 (1033)
..++..++ ..|++.++++ .+++|-.+++|+...+.+ .+.+-| ++|..++.-.+..+++.+++.+.+.+..
T Consensus 390 ~~L~~vli-~km~~P~e~~-ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~- 462 (1023)
T 4hat_C 390 SQLRLVII-ENMVRPEEVL-VVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDG- 462 (1023)
T ss_dssp HHHHHHHH-HSCCCCTTCC-EEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHH-HHCCCCCCCC-CCCCCCCCHHHHHCCCHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHHCC-
T ss_conf 99999999-8657982026-677888608887144558899999999----9999986068789999999999998548-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf 68987887635685899999998775112896246799999883022678-----9865106999999996110566894
Q 001675 421 DETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-----SPVGHLRAKAAWVAGQYAHINFSDQ 495 (1033)
Q Consensus 421 ~~~~~~~~~~~~keaal~~lg~la~~l~~~~~~~~~le~~l~~~v~p~l~-----~~~~~lr~ra~~~l~~~~~~~~~~~ 495 (1033)
+ ..+|+.+||+++++|++++++.+.. ....+.+.+ +.++.... ++.+.+|..+||++|+|+++.-.++
T Consensus 463 ---~--~~~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi-~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~ 535 (1023)
T 4hat_C 463 ---S--EWSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVI-KDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW 535 (1023)
T ss_dssp ---T--TCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHH-HHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH
T ss_pred ---C--CCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf ---8--7888999899999999976898155-788899999-99997541034676259999999999999999986167
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC------CCHHHCCHHHHHHHHHHHHHHHCHHH---HHHHHHH
Q ss_conf 48999999998428999973589799999999971223------20111002999999999852111014---9999999
Q 001675 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD------LNEIRPILPQLLDEFFKLMNEVENED---LVFTLET 566 (1033)
Q Consensus 496 ~~~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~~~~~------~~~l~p~l~~il~~L~~ll~~~~~e~---l~~~l~~ 566 (1033)
+++..+++.++..|.+++..|+..||.|+..+++.+.. .....||++++++.+.......+... +..++..
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98999999999986169878999999999999999888761357777860699999999999884798889999999999
Q ss_pred HHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99960456--54438989999999999998402379999--983688999999999999982058847899877659999
Q 001675 567 IVDKFGEE--MAPYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPI 642 (1033)
Q Consensus 567 iv~~~~~~--i~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~~i~~ii~~~~~~~~~~~~l~~~~~p~ 642 (1033)
++...+.+ ...+...+++.+...+.++......+++- +.+.......+++|.+.+..+++. ..++ .+-++
T Consensus 616 vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~--~f~~----~~~~i 689 (1023)
T 4hat_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA--DFYP----QLGHI 689 (1023)
T ss_dssp HHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG--GGHH----HHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCH--HHHH----HHHHH
T ss_conf 99858877448999999988589999999998722725412878899999999999999998268--8999----99999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCC
Q ss_conf 99971358035799999999996603999-9--986788799999996555852452244321124312721--223668
Q 001675 643 MRRMLTTDGQEVFEEVLEIVSYMTFFSPT-I--SLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTA--HFLTCK 717 (1033)
Q Consensus 643 i~~il~~~~~~~~~~~l~ll~~l~~~~~~-i--s~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~--~~l~~~ 717 (1033)
+..++ .++.-.-++++..+...+. + .|.. ..+++ .-.+++.++..|+.+.++ .+...-
T Consensus 690 ~~~~l-----~~y~~~s~~i~~~~~~~g~~~~~~~~~-----r~~r~-------ik~~il~l~~~~i~~~~~~~~~~~~~ 752 (1023)
T 4hat_C 690 YYNML-----QLYRAVSSMISAQVAAEGLIATKTPKV-----RGLRT-------IKKEILKLVETYISKARNLDDVVKVL 752 (1023)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHHHCGGGGGSHHH-----HHHHH-------HHHHHHHHHHHHHHHCSCHHHHHHHT
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHCCCHHHCCHHH-----HHHHH-------HHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999-----999999999999998479425316888-----88899-------99999999999996279889999986
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCHHHHHHHHHHH----HHH--HHHHHHHHHHHHH
Q ss_conf 8605999999999976178999875573547999999972567301018899999999----973--2344899999999
Q 001675 718 EPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVER----LRR--AEKSYLKCLLVQV 791 (1033)
Q Consensus 718 ~~~~~~~il~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~----l~~--~~~~~~~~~~l~v 791 (1033)
-++.++.++..+.+.. +..-+ ..+..+...++.+++..+.+.++.|+..++.. +++ ...|..+..+...
T Consensus 753 ~~~l~~~vl~dY~~~~--~~~r~---~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~l 827 (1023)
T 4hat_C 753 VEPLLNAVLEDYMNNV--PDARD---AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKL 827 (1023)
T ss_dssp HHHHHHHHHHHHHHSC--GGGCC---HHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--HHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 7889999998887287--20103---889999999999887741015689999999999999855622294989999999
Q ss_pred HHHHHHHCHHHHHH
Q ss_conf 99976009699999
Q 001675 792 IADALYYNSSLTLS 805 (1033)
Q Consensus 792 ~~~~~~~~p~~~~~ 805 (1033)
+.++.-..+..+++
T Consensus 828 l~~~~~~~f~~~~~ 841 (1023)
T 4hat_C 828 LKVINEKSFAAFLE 841 (1023)
T ss_dssp HHHHHHHCTHHHHT
T ss_pred HHHHHHHCHHHHHC
T ss_conf 99999977699974
No 9
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=1.00 E-value=1 Score=325.86 Aligned_cols=586 Identities=11% Similarity=0.161 Sum_probs=356.3
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99478999999823999888999999999720798719999999871276802469999999987841179888886899
Q 001675 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~~~~~~ 80 (1033)
||++.|.+++.+.++|+++.|++|+++|++++++|++|..+.+++.+ +.+..+|++|++.|||.|+++|..
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~~-------- 95 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKI-------- 95 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGGG--------
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 99999999999982999999999999999987290589999999468-998999999999999999764662--------
Q ss_pred CCHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH--HHHHHHHHHHH
Q ss_conf 9966799999999989712---------895889999999999997317999625799999972034--49889999999
Q 001675 81 ISQVDKDMVRDHILVFVAQ---------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (1033)
Q Consensus 81 i~~~~k~~ir~~ll~~l~~---------~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~ 149 (1033)
+|+++|..||+.+++.+.. .++.++++++.+++.|++++||+.||++++++++.++++ ....+|.+|..
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~ 175 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKL 175 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999987268532333468999999999999998683316089999999837998899999999999
Q ss_pred HHHHH-CCCC---C-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCC--------
Q ss_conf 99970-4678---5-4622799999999899999999984022997239999999999968766-5138712--------
Q 001675 150 LSRKY-EFKS---D-EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSI-YLEIPKQ-------- 215 (1033)
Q Consensus 150 i~k~~-~~~~---~-~~~~~l~~i~~~~~p~L~~l~~~~~~~~~~~~~~~~~~~~~lki~~~~~-~~~lp~~-------- 215 (1033)
+.++. .+++ . ..+..+...+...+|.+++++...+.... + ..+...+++++.+++ +..+...
T Consensus 176 L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-~---~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 176 LSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-N---APLVHATLETLLRFLNWIPLGYIFETKLIST 251 (1073)
T ss_dssp HHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C---HHHHHHHHHHHHHHHHHCCHHHHCCCHHHHH
T ss_conf 99999851434230889999999999999999999998755568-8---7999999999999998658987605428999
Q ss_pred -----CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHH-HHHHHH----------HHHHCCCCCCC
Q ss_conf -----27923388999999997258999999999946642102268999999-999999----------99848989998
Q 001675 216 -----LLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTV-HILNRL----------YTRFGDLKLQN 279 (1033)
Q Consensus 216 -----~~~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~-~~l~~l----------~~~~~~~~~~~ 279 (1033)
+..++....-+..+..+++..++ +.+ -+.. ..+ .+++.+ ...|.....-+
T Consensus 252 L~~~~L~~~~~r~aA~dcL~eIv~k~~~-------~~~------~~~~-~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d 317 (1073)
T 3gjx_A 252 LIYKFLNVPMFRNVSLKCLTEIAGVSVS-------QYE------EQFE-TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDE 317 (1073)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSCSG-------GGH------HHHH-HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCC-------CHH------HHHH-HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
T ss_conf 9998669867899999999999964152-------068------9999-9999999999886588202788874465514
Q ss_pred HHH-HHHHHH---HHHHHHHHH---------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC--------------
Q ss_conf 434-999999---999739999---------99999999964188635889999999999821277--------------
Q 001675 280 PEN-RAFAQM---FQKNYAGKI---------LECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISK-------------- 332 (1033)
Q Consensus 280 ~~~-~~f~~~---f~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~v~~-------------- 332 (1033)
.++ ..++.. |...|..-+ +...++.+-..+. .....+...+++||......
T Consensus 318 ~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~--~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~ 395 (1073)
T 3gjx_A 318 QNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE--VEETEIFKICLEYWNHLAAELYRESPFSTSASPL 395 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999999999983585424799999999999838--9919999999999999999998614233344510
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ---------03366504219998999864126679213765510989999881574344578888999999999985060
Q 001675 333 ---------NSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGK 403 (1033)
Q Consensus 333 ---------~~~~~~~~~~l~~li~~ii~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~ 403 (1033)
+..+..++|.+..+... ++..|...++.. .-++|..|++|+...+. +.-+.+.+-.+.+..++.-.+.
T Consensus 396 ~~~~~~~~~~~~~~~y~~i~~~L~~v-lI~~m~~P~ev~-i~e~e~ge~~re~~~d~-~~~~ly~~mrd~L~~lt~l~~~ 472 (1073)
T 3gjx_A 396 LSGSQHFDIPPRRQLYLTVLSKVRLL-MVSRMAKPEEVL-VVENDQGEVVREFMKDT-DSINLYKNMRETLVYLTHLDYV 472 (1073)
T ss_dssp TTSSCCSCSCHHHHTTHHHHHHHHHH-HHHTCCCSCCEE-EEECSSSCEEEEECSSC-HHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCC-CCCCCCCHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCHH
T ss_conf 02221001033899999999999999-998259994235-46765126899988613-2189999999999987048889
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC-----CCCCHH
Q ss_conf 109999999999631156898788763568589999999877511289624679999988302267898-----651069
Q 001675 404 ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP-----VGHLRA 478 (1033)
Q Consensus 404 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~keaal~~lg~la~~l~~~~~~~~~le~~l~~~v~p~l~~~-----~~~lr~ 478 (1033)
.+...+++.+.+.++. +..+|...||+++++|++|..+.+... +..+..+ .+.++.....+ -+.++.
T Consensus 473 ~~~~i~~~~l~~~~~~------~~~sW~~lea~~~aigaIag~~~~~~E-~~~Lp~v-i~~Ll~L~e~~~~kd~k~~vas 544 (1073)
T 3gjx_A 473 DTEIIMTKKLQNQVNG------TEWSWKNLNTLCWAIGSISGAMHEEDE-KRFLVTV-IKDLLGLCEQKRGKDNKAIIAS 544 (1073)
T ss_dssp HHHHHHHHHHHHHHTS------CCCCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHH-HHHHHHHHHHSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHH-HHHHHCCCCCCCCCCHHHHHHH
T ss_conf 9999999999998467------888878883999999998772786210-0229999-9998634144443412699999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC------CCHHHCCHHHHHHHHHHHH
Q ss_conf 9999999611056689448999999998428999973589799999999971223------2011100299999999985
Q 001675 479 KAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD------LNEIRPILPQLLDEFFKLM 552 (1033)
Q Consensus 479 ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~~~~~------~~~l~p~l~~il~~L~~ll 552 (1033)
..||++|+|++|.-.+++++..++..++..+.+++..|+..||.|+..++..+.. .....||+.++++.+....
T Consensus 545 ~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~ 624 (1073)
T 3gjx_A 545 NIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTII 624 (1073)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999950079998677999999999999984498789999999999999999898752355545359999999999999
Q ss_pred HHHCHHH---HHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2111014---9999999999604565--4438989999999999998402379999--9836889999999999999820
Q 001675 553 NEVENED---LVFTLETIVDKFGEEM--APYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESV 625 (1033)
Q Consensus 553 ~~~~~e~---l~~~l~~iv~~~~~~i--~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~~i~~ii~~~ 625 (1033)
...+.+. +..++..++...+.+. ..+...+++.+.+.+.++..+...+++- |.+.......+++|...+..++
T Consensus 625 ~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~ 704 (1073)
T 3gjx_A 625 CDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAV 704 (1073)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 74699999999999999998599720299999999889999999999986217142058389999999996539988456
Q ss_pred C
Q ss_conf 5
Q 001675 626 S 626 (1033)
Q Consensus 626 ~ 626 (1033)
+
T Consensus 705 g 705 (1073)
T 3gjx_A 705 G 705 (1073)
T ss_dssp C
T ss_pred C
T ss_conf 5
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=321.41 Aligned_cols=736 Identities=13% Similarity=0.130 Sum_probs=416.0
Q ss_pred CCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9947899999982399--9888999999999720798719999999871276-802469999999987841179888886
Q 001675 1 MDLPSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNC-DLSVRQVASIHFKNFIAKNWAPHEPNE 77 (1033)
Q Consensus 1 Md~~~L~~~L~~tls~--d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~-~~~vRq~Aai~lKn~i~~~W~~~~~~~ 77 (1033)
||.+++.++++.+++| |++.|++|+++|+++++.|++|..+..++.+.+. +..+|++|+.+|||.|+ .
T Consensus 3 m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~---~------ 73 (980)
T 3ibv_A 3 MSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR---E------ 73 (980)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH---H------
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH---H------
T ss_conf 9999999999998489999999999999999987394599999999837999989999999999999987---5------
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH-H---HHHHH
Q ss_conf 8999966----799999999989712-----895889999999999997317999625799999972034-4---98899
Q 001675 78 QQKISQV----DKDMVRDHILVFVAQ-----VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q---VYGAL 144 (1033)
Q Consensus 78 ~~~i~~~----~k~~ir~~ll~~l~~-----~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~-~---~~~~L 144 (1033)
++++ ++..||+.+++.+.. .++.||++++.+++.|++++||..||++++++++.++++ . +...|
T Consensus 74 ---l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~L 150 (980)
T 3ibv_A 74 ---WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYL 150 (980)
T ss_dssp ---CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf ---88201088999999999999997057778679999999999999998685447539999999856897268999999
Q ss_pred HHHHHHHHHHCC---CCCC---CC-HHHHHHH-----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999997046---7854---62-2799999-----9998999999999840229972399999999999687665138
Q 001675 145 FVLRILSRKYEF---KSDE---ER-TPVYRIV-----EETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEI 212 (1033)
Q Consensus 145 ~~L~~i~k~~~~---~~~~---~~-~~l~~i~-----~~~~p~L~~l~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~l 212 (1033)
++|..+.++... .+.. .| ..+...+ +.+++..+.++.+..... ...++..+++|+.+++.- +
T Consensus 151 riL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~-----~~~l~~~~L~~l~s~i~w-i 224 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK-----NYGTVGLCLQVYAQWVSW-I 224 (980)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTTT-S
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHH-C
T ss_conf 9999858999723236678877665999999986628899999999999874128-----899999999999999865-2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHH-------------------H
Q ss_conf 712-27923388999999997258999999999946642102268999999999999998-------------------4
Q 001675 213 PKQ-LLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTR-------------------F 272 (1033)
Q Consensus 213 p~~-~~~~~~l~~w~~~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~-------------------~ 272 (1033)
|.. ..+ ..+++.+...++.+ +++..++++++.++.+ |
T Consensus 225 ~~~~i~~----~~ll~~l~~~L~~~-------------------~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 225 NINLIVN----EPCMNLLYSFLQIE-------------------ELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp CHHHHHC----HHHHHHHHHHTTSH-------------------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHC----CHHHHHHHHHCCCH-------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7786503----01899999982886-------------------779999999999997378956689999997579999
Q ss_pred CCCC--CCCHHH-HHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8989--998434-99999999------------------------97399999999999996418863588999999999
Q 001675 273 GDLK--LQNPEN-RAFAQMFQ------------------------KNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQY 325 (1033)
Q Consensus 273 ~~~~--~~~~~~-~~f~~~f~------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~f 325 (1033)
.... .-+.+. ..+++.|. ...+..+++.++.. ... .++.+...++.|
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~---~~~---~~deVs~~t~~F 355 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRY---LSD---DYDETSTAVFPF 355 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHH---HTC---SSHHHHHTTHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HCC---CCHHHHHHHHHH
T ss_conf 98744555689999999999999999998735865555255666899999999999999---679---806399999999
Q ss_pred HHHHCCCHH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 982127703-------3665042199989998641266792137655109899998815743445788889999999999
Q 001675 326 LSNSISKNS-------MYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELV 398 (1033)
Q Consensus 326 l~~~v~~~~-------~~~~~~~~l~~li~~ii~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~ 398 (1033)
|...+..-. ....+++++..++..+ +..|++.+++ .|++|. +.|+.+++...|.....+++.+.
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~l-i~k~~yp~d~--~~~~~~------d~ed~~~F~e~Rk~l~~l~d~~~ 426 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAI-IKKMKYDESQ--EWDDDP------DSEEEAEFQEMRKKLKIFQDTIN 426 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH-HHTTSCCTTC--CCCCCS------SSSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHCCCCCCC--CCCCCC------CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998724422343378999999999999-9872289865--666665------55479999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHCCCC-C
Q ss_conf 850601099999999996311568987887635685899999998775112-------89624679999988302267-8
Q 001675 399 RKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-------TEPYKSELERMLVQHVFPEF-S 470 (1033)
Q Consensus 399 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~keaal~~lg~la~~l~~-------~~~~~~~le~~l~~~v~p~l-~ 470 (1033)
...+..++..+..++...+++...+. ...+|+.+||++++++++++++.. ..+....+.+++...+-... +
T Consensus 427 ~l~~~~~l~~~~~~i~~~l~~~l~~~-~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~ 505 (980)
T 3ibv_A 427 SIDSSLFSSYMYSAITSSLSTAATLS-PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCR 505 (980)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTT
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 64849888889999999999871555-89987999999999999876534312366755210689999999998478888
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHH
Q ss_conf 9865106999999996110566894489999999984--28999973589799999999971223201110029999999
Q 001675 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS--GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (1033)
Q Consensus 471 ~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~--~L~d~~~~Vr~~A~~al~~~~~~~~~~~~l~p~l~~il~~L 548 (1033)
.+||.+|..+||++|+|+++.-.+++++..+++.++. .+.+++..||..||.++.+||+.+ +..+.||++.+++.+
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~--~~~L~~~~~~il~~l 583 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI--KKQVVNYTESSLAML 583 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT--TTTCSSSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf 997899999999999999998519354999999982600266997659999999999999986--687445899999999
Q ss_pred HHHHHH-H---C-----------------HH---HHHHHHHHHHHHHC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 998521-1---1-----------------01---49999999999604---56544389899999999999984023799
Q 001675 549 FKLMNE-V---E-----------------NE---DLVFTLETIVDKFG---EEMAPYALGLCQNLAAAFWRCMNTAEADE 601 (1033)
Q Consensus 549 ~~ll~~-~---~-----------------~e---~l~~~l~~iv~~~~---~~i~p~~~~l~~~L~~~~~~~~~~~~~d~ 601 (1033)
-.++.. . + .+ .+..+++.++...+ ++...+...++..|.+.+.+.......+
T Consensus 584 ~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~- 662 (980)
T 3ibv_A 584 GDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSA- 662 (980)
T ss_dssp TGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 9861686788875322221045420367714788999999999927899878999999999999999999988641358-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99983688999999999999982058847899877659999999713580357999999999966039999986788799
Q 001675 602 DADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWP 681 (1033)
Q Consensus 602 ~~~~~~~~~~~~~l~~i~~ii~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~is~~l~~l~~ 681 (1033)
+++.. ..+.++-+++++.+.....+.. ..++.+.+++.++
T Consensus 663 --~~~~~-~i~~~i~al~~lakgf~~~~~~-------------------------------------~~p~~~~f~~~~~ 702 (980)
T 3ibv_A 663 --LENII-SVYCSLMAIGNFAKGFPARGSE-------------------------------------EVAWLASFNKASD 702 (980)
T ss_dssp ---CHHH-HHHHHHHHHHHHHHTSCSCC-C-------------------------------------CCSHHHHHHHHHH
T ss_pred --CCHHH-HHHHHHHHHHHHHCCCCCCCCC-------------------------------------CCCHHHHHHHHHH
T ss_conf --63888-9999999999973167864688-------------------------------------8818999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999965558--52452244321124312721223668860599999999997617899987557354799999997256
Q 001675 682 LMMEALADWA--IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG 759 (1033)
Q Consensus 682 ~l~~~~~~~~--~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~ 759 (1033)
.+...+..+. ..........++..+..-...++ +++..++..+...++ ..+......++..+++.++.
T Consensus 703 ~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~~-----~~e~~~fL~l~~qli~~f~~ 772 (980)
T 3ibv_A 703 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSID-----MNELVDVLSFISQLIHIYKD 772 (980)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHCC-----TTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHH-----HHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999882678678999999999999997557679-----878999999983698-----79999999999999999988
Q ss_pred CCHHCHHHHHHHHHHH----HHHH-------H-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 7301018899999999----9732-------3-44899999999999760096999999996084499999999989998
Q 001675 760 QVDHWVEPYLRITVER----LRRA-------E-KSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQV 827 (1033)
Q Consensus 760 ~~~~~l~~il~~~l~~----l~~~-------~-~~~~~~~~l~v~~~~~~~~p~~~~~~L~~~~~~~~~~~~w~~~~~~~ 827 (1033)
.+.+.+..++..++.+ |... + ...++..++.++...+..+-..++-.-...+.++.++...+....
T Consensus 773 ~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~-- 850 (980)
T 3ibv_A 773 NMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFAN-- 850 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHC--
T ss_conf 899999988999999999971689899479999999999999999999837860452177656789999999999826--
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8505444432002458889998887402
Q 001675 828 KKNGLRVNFKREHDKKVCCLGLTSLLAL 855 (1033)
Q Consensus 828 ~~~~~~~~~~~~~d~Kl~~lal~~ll~~ 855 (1033)
.+......|+++.-|++++..
T Consensus 851 -------~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 851 -------LVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp -----------CHHHHHHHHHHHHHHHC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHH
T ss_conf -------678748998999999999999
Done!