Query 001676
Match_columns 1033
No_of_seqs 737 out of 4583
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11107 hybrid sensory histid 100.0 5.4E-60 1.2E-64 606.9 68.8 505 427-1027 283-787 (919)
2 PRK10841 hybrid sensory kinase 100.0 3.8E-59 8.2E-64 592.3 61.2 489 420-1027 430-919 (924)
3 KOG0519 Sensory transduction h 100.0 9.8E-61 2.1E-65 591.9 14.6 767 225-1026 4-785 (786)
4 PRK15347 two component system 100.0 9E-54 1.9E-58 549.6 77.5 427 423-1025 384-810 (921)
5 PRK11091 aerobic respiration c 100.0 2E-54 4.3E-59 546.0 48.8 371 427-1027 273-645 (779)
6 TIGR02956 TMAO_torS TMAO reduc 100.0 3.5E-54 7.6E-59 556.2 51.0 372 424-1026 451-822 (968)
7 PRK11466 hybrid sensory histid 100.0 1.7E-52 3.7E-57 537.4 51.3 371 421-1027 428-800 (914)
8 PRK09959 hybrid sensory histid 100.0 3.4E-48 7.5E-53 510.6 51.1 383 417-1026 692-1075(1197)
9 PRK10618 phosphotransfer inter 100.0 2.8E-45 6.2E-50 459.7 46.2 240 421-711 434-673 (894)
10 PRK13837 two-component VirA-li 100.0 5.2E-43 1.1E-47 443.7 51.2 363 436-1027 449-814 (828)
11 COG5002 VicK Signal transducti 100.0 6.2E-41 1.3E-45 357.5 17.6 227 433-713 221-451 (459)
12 PRK13557 histidine kinase; Pro 100.0 1.2E-36 2.6E-41 366.9 47.4 369 436-1029 162-537 (540)
13 PRK09303 adaptive-response sen 100.0 3.6E-36 7.8E-41 348.8 33.1 243 414-711 128-378 (380)
14 COG2205 KdpD Osmosensitive K+ 100.0 1.4E-36 3E-41 356.3 29.4 225 431-713 654-882 (890)
15 PRK11006 phoR phosphate regulo 100.0 6.7E-33 1.5E-37 326.7 29.4 221 435-711 202-424 (430)
16 PRK10604 sensor protein RstB; 100.0 9.3E-32 2E-36 317.3 35.6 229 422-712 197-425 (433)
17 PRK10815 sensor protein PhoQ; 100.0 1.1E-30 2.3E-35 312.0 37.1 222 429-711 258-479 (485)
18 TIGR02938 nifL_nitrog nitrogen 100.0 6.5E-31 1.4E-35 312.4 30.9 211 437-710 276-494 (494)
19 PRK10549 signal transduction h 100.0 3.9E-30 8.5E-35 305.5 35.8 236 421-712 224-460 (466)
20 PRK10490 sensor protein KdpD; 100.0 5.8E-30 1.3E-34 324.6 33.2 223 432-712 659-884 (895)
21 PRK10755 sensor protein BasS/P 100.0 3.2E-29 6.8E-34 287.8 34.8 227 422-711 122-351 (356)
22 PRK10364 sensor protein ZraS; 100.0 3.6E-29 7.8E-34 297.3 36.2 213 436-712 236-450 (457)
23 PRK09835 sensor kinase CusS; P 100.0 8.5E-29 1.8E-33 295.2 37.5 232 422-710 247-480 (482)
24 TIGR03785 marine_sort_HK prote 100.0 7.9E-29 1.7E-33 307.5 37.2 231 423-709 471-703 (703)
25 TIGR01386 cztS_silS_copS heavy 100.0 7.2E-29 1.6E-33 293.2 34.9 230 422-709 226-457 (457)
26 PRK09470 cpxA two-component se 100.0 2E-28 4.4E-33 290.1 37.2 231 422-711 228-458 (461)
27 COG4251 Bacteriophytochrome (l 100.0 1.8E-29 3.8E-34 287.7 25.6 236 420-714 507-745 (750)
28 COG4191 Signal transduction hi 100.0 3.3E-26 7.1E-31 262.6 51.8 211 438-710 385-601 (603)
29 COG3852 NtrB Signal transducti 100.0 4.1E-29 9E-34 264.5 25.0 222 435-712 130-356 (363)
30 PRK09467 envZ osmolarity senso 100.0 4E-28 8.6E-33 285.9 34.5 222 421-711 213-434 (435)
31 PRK10337 sensor protein QseC; 100.0 6.1E-28 1.3E-32 285.7 34.5 226 422-708 222-449 (449)
32 TIGR02966 phoR_proteo phosphat 100.0 2.4E-28 5.2E-33 275.1 27.9 218 436-708 113-333 (333)
33 PRK11100 sensory histidine kin 100.0 8.9E-27 1.9E-31 276.5 35.5 218 436-710 255-473 (475)
34 PRK11073 glnL nitrogen regulat 100.0 3.1E-27 6.8E-32 270.0 28.2 217 436-710 129-347 (348)
35 COG0642 BaeS Signal transducti 99.9 1E-25 2.2E-30 251.2 30.6 217 436-712 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 8.4E-26 1.8E-30 275.2 30.0 214 436-712 389-603 (607)
37 TIGR02916 PEP_his_kin putative 99.9 2.6E-24 5.6E-29 267.7 29.6 203 436-709 474-679 (679)
38 PF03924 CHASE: CHASE domain; 99.9 3E-25 6.6E-30 233.2 15.7 186 157-350 2-193 (193)
39 PRK13560 hypothetical protein; 99.9 1.7E-24 3.6E-29 274.1 25.2 210 423-711 591-804 (807)
40 PRK11086 sensory histidine kin 99.9 1.3E-22 2.8E-27 245.6 23.3 195 437-712 339-537 (542)
41 PRK11644 sensory histidine kin 99.9 1.6E-21 3.5E-26 233.4 31.1 195 434-710 299-494 (495)
42 COG5000 NtrY Signal transducti 99.9 5.1E-22 1.1E-26 226.8 21.9 211 436-710 485-708 (712)
43 PRK15053 dpiB sensor histidine 99.9 1.5E-21 3.2E-26 237.1 26.8 198 439-712 340-541 (545)
44 COG3614 Predicted periplasmic 99.9 3.9E-20 8.5E-25 197.8 23.9 228 84-319 10-247 (348)
45 COG4192 Signal transduction hi 99.8 1.5E-19 3.3E-24 199.3 25.4 209 439-710 453-666 (673)
46 COG0745 OmpR Response regulato 99.8 9.8E-20 2.1E-24 195.7 16.7 118 888-1028 2-119 (229)
47 PRK13559 hypothetical protein; 99.8 6.7E-19 1.4E-23 202.6 22.7 186 436-711 169-360 (361)
48 PF02518 HATPase_c: Histidine 99.8 2.4E-19 5.1E-24 171.0 13.0 109 548-710 1-110 (111)
49 PRK10935 nitrate/nitrite senso 99.8 5.4E-17 1.2E-21 197.9 26.9 193 439-711 362-560 (565)
50 COG3290 CitA Signal transducti 99.7 1.9E-16 4.2E-21 181.9 23.3 194 439-712 335-533 (537)
51 PRK09581 pleD response regulat 99.7 6.2E-16 1.3E-20 182.8 24.0 256 740-1023 4-270 (457)
52 PRK10600 nitrate/nitrite senso 99.7 1.4E-15 3E-20 186.1 27.7 182 449-711 374-557 (569)
53 COG2204 AtoC Response regulato 99.7 9.3E-17 2E-21 185.2 15.3 117 887-1026 5-121 (464)
54 PF00072 Response_reg: Respons 99.7 1.3E-16 2.7E-21 151.4 13.5 111 889-1022 1-112 (112)
55 COG3437 Response regulator con 99.7 9.9E-17 2.1E-21 175.9 12.1 119 886-1024 14-132 (360)
56 COG0784 CheY FOG: CheY-like re 99.7 6.8E-16 1.5E-20 150.3 15.6 119 886-1027 5-126 (130)
57 COG4753 Response regulator con 99.7 1.9E-16 4.1E-21 182.2 13.3 115 888-1025 3-120 (475)
58 COG3706 PleD Response regulato 99.6 6.5E-15 1.4E-19 168.8 19.3 123 885-1028 131-253 (435)
59 COG4566 TtrR Response regulato 99.6 4.2E-15 9E-20 149.3 13.5 117 887-1026 5-121 (202)
60 PRK10547 chemotaxis protein Ch 99.6 3.8E-14 8.3E-19 172.5 24.7 146 510-712 343-525 (670)
61 COG2197 CitB Response regulato 99.6 6.1E-15 1.3E-19 157.1 15.5 117 888-1027 2-120 (211)
62 COG4565 CitB Response regulato 99.6 4.1E-15 8.8E-20 152.2 13.1 115 888-1025 2-118 (224)
63 PLN03029 type-a response regul 99.6 3.1E-14 6.6E-19 153.2 14.8 118 886-1023 8-144 (222)
64 PRK10046 dpiA two-component re 99.5 1.2E-13 2.6E-18 148.8 16.4 115 887-1024 5-121 (225)
65 PRK10529 DNA-binding transcrip 99.5 1.6E-13 3.4E-18 146.5 16.8 117 887-1027 2-118 (225)
66 PRK04184 DNA topoisomerase VI 99.5 1.8E-13 3.9E-18 161.3 17.3 117 546-712 30-154 (535)
67 PRK11173 two-component respons 99.5 2.1E-13 4.6E-18 147.3 16.5 117 887-1027 4-120 (237)
68 PRK10816 DNA-binding transcrip 99.5 3E-13 6.4E-18 144.4 16.6 117 888-1027 2-118 (223)
69 PRK09836 DNA-binding transcrip 99.5 4.2E-13 9E-18 143.6 16.8 117 888-1027 2-118 (227)
70 PRK10643 DNA-binding transcrip 99.5 4.9E-13 1.1E-17 141.8 16.4 116 888-1026 2-117 (222)
71 PRK09468 ompR osmolarity respo 99.5 6E-13 1.3E-17 143.7 17.2 119 886-1027 5-123 (239)
72 PRK10766 DNA-binding transcrip 99.5 5.1E-13 1.1E-17 142.2 15.9 115 887-1025 3-117 (221)
73 PRK10430 DNA-binding transcrip 99.5 5.2E-13 1.1E-17 145.1 15.7 114 888-1023 3-119 (239)
74 COG3947 Response regulator con 99.5 8.1E-14 1.8E-18 147.6 8.5 115 888-1027 2-116 (361)
75 PRK10161 transcriptional regul 99.5 8.2E-13 1.8E-17 141.5 16.3 120 887-1027 3-122 (229)
76 PRK10701 DNA-binding transcrip 99.5 7.6E-13 1.6E-17 143.1 16.1 116 888-1027 3-118 (240)
77 PRK13856 two-component respons 99.5 7.3E-13 1.6E-17 143.6 15.9 115 888-1026 3-118 (241)
78 PRK10955 DNA-binding transcrip 99.5 9.8E-13 2.1E-17 140.8 16.4 114 888-1026 3-116 (232)
79 TIGR02154 PhoB phosphate regul 99.5 9.9E-13 2.2E-17 139.7 16.3 120 887-1027 3-122 (226)
80 PRK11517 transcriptional regul 99.5 1.5E-12 3.2E-17 138.5 16.8 116 888-1027 2-117 (223)
81 PRK10336 DNA-binding transcrip 99.4 1.2E-12 2.7E-17 138.6 16.0 116 888-1026 2-117 (219)
82 TIGR03787 marine_sort_RR prote 99.4 1.2E-12 2.5E-17 140.0 15.6 117 887-1026 1-119 (227)
83 TIGR02875 spore_0_A sporulatio 99.4 1.9E-12 4.2E-17 142.5 16.4 119 887-1026 3-123 (262)
84 TIGR01387 cztR_silR_copR heavy 99.4 2.4E-12 5.3E-17 136.1 16.3 116 889-1027 1-116 (218)
85 smart00387 HATPase_c Histidine 99.4 2.5E-12 5.4E-17 119.9 14.5 109 548-710 1-110 (111)
86 PRK11083 DNA-binding response 99.4 4.3E-12 9.2E-17 135.2 17.1 118 887-1027 4-121 (228)
87 PRK10840 transcriptional regul 99.4 3.3E-12 7.1E-17 136.5 15.4 117 887-1026 4-125 (216)
88 COG4567 Response regulator con 99.4 3.3E-12 7.2E-17 123.3 13.2 115 887-1024 10-124 (182)
89 CHL00148 orf27 Ycf27; Reviewed 99.4 5.8E-12 1.3E-16 135.6 16.0 116 887-1026 7-122 (240)
90 PRK09958 DNA-binding transcrip 99.4 6.8E-12 1.5E-16 131.7 15.9 117 888-1027 2-119 (204)
91 PRK14084 two-component respons 99.4 5E-12 1.1E-16 137.6 15.2 113 888-1025 2-116 (246)
92 PRK10923 glnG nitrogen regulat 99.4 5.2E-12 1.1E-16 151.0 16.4 116 887-1025 4-119 (469)
93 PRK11361 acetoacetate metaboli 99.4 5.9E-12 1.3E-16 150.0 16.5 118 886-1026 4-121 (457)
94 PRK15115 response regulator Gl 99.4 5.4E-12 1.2E-16 149.8 15.2 117 887-1026 6-122 (444)
95 PRK09483 response regulator; P 99.4 1E-11 2.2E-16 131.7 15.6 117 888-1027 3-121 (217)
96 TIGR02915 PEP_resp_reg putativ 99.4 6.1E-12 1.3E-16 149.4 14.9 113 889-1026 1-118 (445)
97 PRK09935 transcriptional regul 99.3 1.5E-11 3.3E-16 129.2 16.0 118 887-1027 4-123 (210)
98 PRK10360 DNA-binding transcrip 99.3 1.5E-11 3.3E-16 128.1 15.5 114 888-1027 3-118 (196)
99 PRK11697 putative two-componen 99.3 1.1E-11 2.3E-16 134.2 14.5 113 888-1026 3-117 (238)
100 PRK10365 transcriptional regul 99.3 6.3E-12 1.4E-16 149.0 13.7 116 887-1025 6-121 (441)
101 PRK12555 chemotaxis-specific m 99.3 1.2E-11 2.7E-16 141.4 15.2 114 888-1025 2-128 (337)
102 PRK10710 DNA-binding transcrip 99.3 2.9E-11 6.2E-16 130.2 17.0 116 887-1026 11-126 (240)
103 TIGR01818 ntrC nitrogen regula 99.3 1.1E-11 2.3E-16 148.1 14.6 114 889-1025 1-114 (463)
104 PF00512 HisKA: His Kinase A ( 99.3 9E-12 1.9E-16 108.0 9.9 66 436-501 1-68 (68)
105 PRK15479 transcriptional regul 99.3 4E-11 8.6E-16 127.1 16.1 116 888-1026 2-117 (221)
106 TIGR01052 top6b DNA topoisomer 99.3 1.8E-11 4E-16 143.0 13.1 111 546-709 22-139 (488)
107 KOG0519 Sensory transduction h 99.3 3.1E-11 6.6E-16 151.3 15.6 402 425-862 374-784 (786)
108 PRK14868 DNA topoisomerase VI 99.3 3.1E-11 6.8E-16 144.8 14.8 129 528-710 21-159 (795)
109 PRK10100 DNA-binding transcrip 99.3 5.2E-11 1.1E-15 127.4 14.1 115 886-1027 10-127 (216)
110 PRK00742 chemotaxis-specific m 99.3 7.1E-11 1.5E-15 136.2 16.1 114 887-1024 4-130 (354)
111 PRK11475 DNA-binding transcrip 99.2 5.7E-11 1.2E-15 126.2 13.5 106 899-1027 3-115 (207)
112 PRK09390 fixJ response regulat 99.2 8.3E-11 1.8E-15 122.0 14.2 117 887-1026 4-120 (202)
113 PRK09581 pleD response regulat 99.2 1.3E-10 2.9E-15 137.4 16.5 117 888-1025 4-120 (457)
114 cd00075 HATPase_c Histidine ki 99.2 1.1E-10 2.4E-15 106.9 12.4 101 553-708 1-103 (103)
115 PRK14867 DNA topoisomerase VI 99.2 7.3E-11 1.6E-15 141.8 13.8 114 547-712 28-151 (659)
116 COG2201 CheB Chemotaxis respon 99.2 6.9E-11 1.5E-15 132.0 12.1 102 888-1013 3-108 (350)
117 PRK13435 response regulator; P 99.2 3.3E-10 7.2E-15 112.8 14.8 114 886-1026 5-120 (145)
118 TIGR01925 spIIAB anti-sigma F 99.2 1.9E-10 4.1E-15 114.1 12.6 98 548-708 35-136 (137)
119 PRK10651 transcriptional regul 99.2 5.1E-10 1.1E-14 117.8 16.0 118 887-1027 7-126 (216)
120 COG3707 AmiR Response regulato 99.2 1.4E-10 3E-15 117.9 10.9 112 887-1022 6-118 (194)
121 PRK15369 two component system 99.2 5.6E-10 1.2E-14 116.4 15.8 118 887-1027 4-123 (211)
122 PRK13558 bacterio-opsin activa 99.2 1.8E-10 3.9E-15 143.8 14.0 115 887-1024 8-124 (665)
123 PRK10403 transcriptional regul 99.1 6.6E-10 1.4E-14 116.7 15.7 117 887-1026 7-125 (215)
124 PRK10610 chemotaxis regulatory 99.1 1.2E-09 2.7E-14 103.2 16.1 119 887-1026 6-125 (129)
125 COG3452 Predicted periplasmic 99.1 4.1E-09 8.9E-14 111.0 19.8 195 84-332 14-210 (297)
126 PRK15411 rcsA colanic acid cap 99.1 8.4E-10 1.8E-14 117.5 14.2 116 888-1027 2-123 (207)
127 COG0643 CheA Chemotaxis protei 99.1 1.1E-08 2.3E-13 125.9 24.8 140 513-711 393-574 (716)
128 PRK03660 anti-sigma F factor; 99.1 1.1E-09 2.5E-14 109.6 13.3 101 549-712 36-140 (146)
129 PRK09191 two-component respons 99.1 1.5E-09 3.2E-14 119.1 15.0 115 887-1027 138-254 (261)
130 PRK10693 response regulator of 99.0 1.6E-09 3.4E-14 122.3 11.8 89 915-1026 2-91 (303)
131 COG4585 Signal transduction hi 99.0 2.1E-07 4.6E-12 107.8 29.0 118 521-710 248-365 (365)
132 COG3851 UhpB Signal transducti 99.0 2.4E-07 5.3E-12 101.4 27.0 189 436-709 302-493 (497)
133 cd00156 REC Signal receiver do 99.0 6.1E-09 1.3E-13 94.1 12.7 112 890-1024 1-112 (113)
134 COG3920 Signal transduction hi 98.9 5.1E-07 1.1E-11 96.9 25.5 194 436-712 18-217 (221)
135 COG3850 NarQ Signal transducti 98.8 2.1E-06 4.5E-11 99.3 26.6 184 442-709 374-567 (574)
136 PRK04069 serine-protein kinase 98.8 1.2E-07 2.6E-12 96.9 14.1 103 549-712 39-145 (161)
137 COG2972 Predicted signal trans 98.7 4.3E-06 9.4E-11 99.8 29.1 65 636-711 386-453 (456)
138 PRK15029 arginine decarboxylas 98.7 6.1E-08 1.3E-12 119.7 11.7 106 888-1016 2-121 (755)
139 COG3279 LytT Response regulato 98.6 1.3E-07 2.9E-12 103.1 10.4 112 888-1024 3-116 (244)
140 COG3275 LytS Putative regulato 98.6 1.6E-05 3.5E-10 90.6 25.2 129 508-712 415-553 (557)
141 smart00388 HisKA His Kinase A 98.5 4.3E-07 9.4E-12 76.5 8.3 64 437-500 2-65 (66)
142 TIGR01924 rsbW_low_gc serine-p 98.5 1.4E-06 3.1E-11 88.9 12.8 102 549-711 39-144 (159)
143 COG4564 Signal transduction hi 98.4 0.00015 3.3E-09 79.1 25.4 183 448-711 262-448 (459)
144 KOG0787 Dehydrogenase kinase [ 98.4 3.7E-05 8E-10 85.5 21.0 183 472-710 174-380 (414)
145 PF14501 HATPase_c_5: GHKL dom 98.3 1.3E-05 2.7E-10 75.2 13.0 94 549-710 2-99 (100)
146 PRK11107 hybrid sensory histid 98.2 8.5E-06 1.8E-10 105.7 14.9 118 883-1025 533-650 (919)
147 cd00082 HisKA Histidine Kinase 98.1 1.5E-05 3.3E-10 66.4 8.1 62 436-497 3-65 (65)
148 COG3706 PleD Response regulato 98.0 4.7E-06 1E-10 96.6 5.0 92 911-1027 13-104 (435)
149 TIGR00585 mutl DNA mismatch re 97.9 6.3E-05 1.4E-09 85.3 12.3 97 551-707 21-125 (312)
150 PF13581 HATPase_c_2: Histidin 97.6 0.00048 1E-08 66.9 11.2 93 549-707 28-124 (125)
151 COG1389 DNA topoisomerase VI, 97.5 0.00025 5.4E-09 80.7 9.0 115 549-711 33-151 (538)
152 smart00448 REC cheY-homologous 96.7 0.0072 1.6E-07 46.2 7.5 54 888-942 2-55 (55)
153 COG2172 RsbW Anti-sigma regula 96.6 0.018 4E-07 57.8 11.2 90 549-701 37-131 (146)
154 PRK00095 mutL DNA mismatch rep 96.6 0.0096 2.1E-07 73.8 11.0 87 552-698 22-114 (617)
155 PF06490 FleQ: Flagellar regul 96.4 0.022 4.8E-07 54.3 9.8 106 888-1024 1-107 (109)
156 PF00072 Response_reg: Respons 95.9 0.053 1.1E-06 50.8 9.8 110 741-858 1-111 (112)
157 PF13589 HATPase_c_3: Histidin 95.6 0.011 2.3E-07 58.9 3.7 67 638-709 35-106 (137)
158 COG0745 OmpR Response regulato 95.2 0.18 3.9E-06 54.7 12.0 117 739-864 1-118 (229)
159 PRK05559 DNA topoisomerase IV 95.1 0.042 9E-07 68.2 7.3 90 549-698 34-138 (631)
160 PRK11091 aerobic respiration c 94.2 0.21 4.5E-06 64.1 10.9 195 737-955 524-719 (779)
161 COG2204 AtoC Response regulato 94.1 0.29 6.4E-06 57.9 10.9 179 739-925 5-210 (464)
162 cd02071 MM_CoA_mut_B12_BD meth 93.9 1.2 2.5E-05 43.4 13.0 107 893-1022 10-121 (122)
163 PRK02261 methylaspartate mutas 93.4 2.2 4.7E-05 42.5 14.1 119 886-1026 3-135 (137)
164 PRK14083 HSP90 family protein; 93.4 0.057 1.2E-06 66.3 3.5 57 638-698 64-127 (601)
165 TIGR01055 parE_Gneg DNA topois 93.3 0.098 2.1E-06 64.8 5.4 50 638-687 63-124 (625)
166 PRK15347 two component system 93.1 0.81 1.8E-05 59.7 13.7 121 737-863 689-811 (921)
167 TIGR01059 gyrB DNA gyrase, B s 93.1 0.18 4E-06 63.0 7.3 29 549-577 27-58 (654)
168 PRK05644 gyrB DNA gyrase subun 92.3 0.25 5.3E-06 61.5 6.9 82 549-686 34-130 (638)
169 TIGR02956 TMAO_torS TMAO reduc 92.2 0.78 1.7E-05 60.2 11.9 121 737-863 701-822 (968)
170 PLN03029 type-a response regul 92.2 1 2.2E-05 48.5 10.8 120 737-860 7-144 (222)
171 COG0784 CheY FOG: CheY-like re 91.2 2.6 5.7E-05 40.2 11.5 117 737-861 4-123 (130)
172 PRK10841 hybrid sensory kinase 91.0 1.5 3.2E-05 57.4 12.3 119 736-862 799-917 (924)
173 PF03709 OKR_DC_1_N: Orn/Lys/A 90.8 0.97 2.1E-05 43.5 7.9 95 900-1017 7-103 (115)
174 PRK05218 heat shock protein 90 90.6 0.8 1.7E-05 56.9 9.0 58 638-699 74-143 (613)
175 PTZ00272 heat shock protein 83 90.3 0.23 4.9E-06 62.0 3.7 20 638-657 73-92 (701)
176 PRK00742 chemotaxis-specific m 89.8 23 0.00049 40.9 19.6 106 738-850 3-110 (354)
177 COG5381 Uncharacterized protei 89.6 0.74 1.6E-05 45.3 5.8 29 553-581 64-92 (184)
178 PRK13837 two-component VirA-li 89.2 5.3 0.00011 51.8 15.2 119 737-864 696-814 (828)
179 PRK11466 hybrid sensory histid 89.0 1.9 4.2E-05 56.2 11.1 120 737-863 680-799 (914)
180 cd02067 B12-binding B12 bindin 88.8 3.1 6.8E-05 39.9 9.8 94 893-1010 10-109 (119)
181 TIGR02154 PhoB phosphate regul 87.9 5.7 0.00012 41.6 12.0 119 739-863 3-121 (226)
182 PTZ00130 heat shock protein 90 87.7 0.71 1.5E-05 58.1 5.5 47 638-684 136-193 (814)
183 PRK10161 transcriptional regul 87.3 5.7 0.00012 42.0 11.7 119 739-863 3-121 (229)
184 COG4999 Uncharacterized domain 87.2 4.1 8.8E-05 39.0 8.8 116 883-1025 8-126 (140)
185 TIGR01818 ntrC nitrogen regula 86.9 2.9 6.3E-05 50.1 10.1 155 741-910 1-155 (463)
186 TIGR00640 acid_CoA_mut_C methy 86.9 8.8 0.00019 38.0 11.7 111 893-1024 13-126 (132)
187 PRK12555 chemotaxis-specific m 86.6 19 0.00041 41.3 16.2 117 739-862 1-128 (337)
188 PRK10955 DNA-binding transcrip 86.4 6.4 0.00014 41.6 11.4 114 740-863 3-116 (232)
189 TIGR03815 CpaE_hom_Actino heli 86.2 3.7 8E-05 46.8 10.0 85 910-1025 1-86 (322)
190 COG3437 Response regulator con 85.8 3.5 7.6E-05 46.9 9.1 115 737-858 13-129 (360)
191 smart00433 TOP2c Topoisomerase 85.5 0.93 2E-05 56.1 4.9 48 638-685 34-93 (594)
192 PRK15399 lysine decarboxylase 85.4 2.8 6.1E-05 52.6 9.0 98 888-1010 2-105 (713)
193 PRK09468 ompR osmolarity respo 85.0 9.6 0.00021 40.7 12.0 119 738-864 5-123 (239)
194 COG4566 TtrR Response regulato 84.4 7.4 0.00016 40.6 9.9 118 739-864 5-122 (202)
195 PRK10816 DNA-binding transcrip 84.1 22 0.00048 37.3 14.2 118 739-864 1-118 (223)
196 COG0323 MutL DNA mismatch repa 84.0 1.3 2.8E-05 55.2 5.2 27 638-664 54-80 (638)
197 PRK11173 two-component respons 84.0 9.5 0.00021 40.7 11.4 116 739-863 4-119 (237)
198 PRK09836 DNA-binding transcrip 83.7 11 0.00024 39.8 11.7 117 739-863 1-117 (227)
199 PRK10336 DNA-binding transcrip 82.6 15 0.00032 38.3 12.0 117 739-863 1-117 (219)
200 PRK15400 lysine decarboxylase 81.1 4.7 0.0001 50.6 8.5 80 888-992 2-87 (714)
201 PRK10529 DNA-binding transcrip 81.1 35 0.00077 35.7 14.4 116 739-863 2-117 (225)
202 CHL00148 orf27 Ycf27; Reviewed 80.9 17 0.00037 38.5 11.9 117 738-863 6-122 (240)
203 PRK10766 DNA-binding transcrip 80.8 17 0.00036 38.1 11.7 116 739-863 3-118 (221)
204 PRK11517 transcriptional regul 80.4 15 0.00033 38.4 11.3 116 739-863 1-116 (223)
205 PRK11083 DNA-binding response 80.3 21 0.00045 37.4 12.2 118 739-864 4-121 (228)
206 PRK10643 DNA-binding transcrip 80.3 13 0.00028 38.8 10.6 117 739-863 1-117 (222)
207 PRK10701 DNA-binding transcrip 80.1 16 0.00035 38.9 11.5 116 740-864 3-118 (240)
208 PRK10430 DNA-binding transcrip 79.8 17 0.00037 39.3 11.6 117 739-861 2-120 (239)
209 TIGR02875 spore_0_A sporulatio 79.5 18 0.00038 39.6 11.7 120 739-864 3-124 (262)
210 cd04728 ThiG Thiazole synthase 79.4 17 0.00036 39.7 10.8 96 894-1021 108-220 (248)
211 TIGR01501 MthylAspMutase methy 78.8 32 0.00069 34.2 11.8 108 895-1025 14-132 (134)
212 PRK00208 thiG thiazole synthas 78.8 18 0.00038 39.5 10.8 87 904-1021 117-220 (250)
213 PRK10840 transcriptional regul 77.7 23 0.00049 37.5 11.6 121 738-863 3-125 (216)
214 TIGR01058 parE_Gpos DNA topois 76.5 1.9 4.2E-05 53.6 3.2 51 638-688 67-129 (637)
215 PRK14939 gyrB DNA gyrase subun 76.2 1.8 3.9E-05 54.6 2.9 35 543-577 25-65 (756)
216 TIGR03787 marine_sort_RR prote 76.1 29 0.00062 36.5 11.8 118 740-863 2-119 (227)
217 PRK10610 chemotaxis regulatory 75.9 41 0.00088 30.6 11.6 119 738-862 5-124 (129)
218 PRK10365 transcriptional regul 75.7 13 0.00029 44.1 10.0 118 738-863 5-122 (441)
219 PRK15115 response regulator Gl 75.7 12 0.00025 44.7 9.5 118 738-863 5-122 (444)
220 PHA02569 39 DNA topoisomerase 75.5 2.3 4.9E-05 52.7 3.4 51 638-688 80-144 (602)
221 cd02072 Glm_B12_BD B12 binding 75.1 50 0.0011 32.6 11.9 106 895-1023 12-128 (128)
222 cd02070 corrinoid_protein_B12- 75.1 24 0.00053 37.4 10.7 101 886-1010 82-191 (201)
223 PRK10046 dpiA two-component re 74.9 30 0.00066 36.9 11.7 116 739-862 5-122 (225)
224 PRK13856 two-component respons 74.9 24 0.00053 37.8 11.0 117 740-864 3-119 (241)
225 PRK09959 hybrid sensory histid 74.8 13 0.00028 50.3 10.7 118 738-863 958-1075(1197)
226 PRK09958 DNA-binding transcrip 74.8 20 0.00044 36.9 10.1 117 739-863 1-118 (204)
227 PRK10923 glnG nitrogen regulat 74.6 16 0.00035 43.9 10.4 117 739-863 4-120 (469)
228 cd02069 methionine_synthase_B1 73.3 21 0.00046 38.3 9.8 103 887-1012 89-203 (213)
229 COG4565 CitB Response regulato 73.1 16 0.00034 38.9 8.4 114 740-861 2-117 (224)
230 PF02310 B12-binding: B12 bind 72.7 17 0.00037 34.6 8.2 92 896-1011 14-112 (121)
231 PRK13435 response regulator; P 71.8 51 0.0011 32.1 11.6 114 738-862 5-119 (145)
232 COG4753 Response regulator con 69.4 15 0.00033 43.9 8.2 115 740-864 3-122 (475)
233 PRK10710 DNA-binding transcrip 68.9 64 0.0014 34.0 12.5 115 740-863 12-126 (240)
234 PRK11361 acetoacetate metaboli 68.3 33 0.00072 40.9 11.1 118 738-863 4-121 (457)
235 PRK14084 two-component respons 67.9 47 0.001 35.7 11.3 115 739-863 1-117 (246)
236 PRK09483 response regulator; P 67.7 38 0.00082 35.2 10.3 117 739-863 2-120 (217)
237 PRK15479 transcriptional regul 67.2 38 0.00082 35.1 10.2 116 740-863 2-117 (221)
238 PRK09191 two-component respons 66.7 64 0.0014 34.9 12.2 115 739-863 138-253 (261)
239 COG0326 HtpG Molecular chapero 65.0 7.2 0.00016 47.7 4.5 49 637-685 74-133 (623)
240 PRK10618 phosphotransfer inter 64.7 24 0.00051 46.2 9.4 38 733-770 684-721 (894)
241 TIGR01387 cztR_silR_copR heavy 63.7 46 0.00099 34.4 9.9 115 741-863 1-115 (218)
242 PF02254 TrkA_N: TrkA-N domain 63.4 64 0.0014 30.3 10.0 93 887-1009 22-115 (116)
243 PRK13557 histidine kinase; Pro 63.3 72 0.0016 38.4 12.9 122 736-863 413-534 (540)
244 COG2197 CitB Response regulato 62.7 71 0.0015 34.1 11.2 116 740-863 2-119 (211)
245 COG3947 Response regulator con 62.1 44 0.00096 37.3 9.3 114 740-863 2-115 (361)
246 TIGR03321 alt_F1F0_F0_B altern 61.7 2.5E+02 0.0054 30.8 17.8 19 549-567 191-209 (246)
247 PLN03237 DNA topoisomerase 2; 61.0 14 0.00029 49.8 6.2 53 638-690 112-176 (1465)
248 PRK11697 putative two-componen 61.0 69 0.0015 34.1 10.9 114 739-863 2-117 (238)
249 PRK01130 N-acetylmannosamine-6 57.4 84 0.0018 33.7 10.7 83 902-1009 110-201 (221)
250 COG4567 Response regulator con 56.1 70 0.0015 32.4 8.7 114 740-861 11-124 (182)
251 cd00156 REC Signal receiver do 54.8 73 0.0016 27.2 8.3 110 743-860 2-111 (113)
252 PF03602 Cons_hypoth95: Conser 54.4 17 0.00037 38.0 4.6 67 887-955 66-139 (183)
253 TIGR02915 PEP_resp_reg putativ 53.8 65 0.0014 38.3 10.1 116 741-863 1-118 (445)
254 PRK00043 thiE thiamine-phospha 53.8 1.4E+02 0.0031 31.3 11.7 91 908-1023 102-206 (212)
255 PRK13111 trpA tryptophan synth 53.4 37 0.0008 37.6 7.2 57 945-1023 75-137 (258)
256 cd05212 NAD_bind_m-THF_DH_Cycl 53.2 42 0.0009 33.6 6.9 54 884-943 26-83 (140)
257 PRK10360 DNA-binding transcrip 53.1 80 0.0017 32.1 9.5 113 740-863 3-117 (196)
258 TIGR01334 modD putative molybd 52.7 55 0.0012 36.7 8.4 71 912-1008 191-261 (277)
259 PRK09935 transcriptional regul 52.5 1.1E+02 0.0025 31.2 10.6 118 738-863 3-122 (210)
260 PRK09390 fixJ response regulat 52.5 68 0.0015 32.3 8.8 117 739-863 4-120 (202)
261 PF06490 FleQ: Flagellar regul 51.4 1E+02 0.0022 29.3 8.9 33 740-772 1-33 (109)
262 TIGR00007 phosphoribosylformim 50.8 1.1E+02 0.0024 32.8 10.4 65 921-1009 149-217 (230)
263 TIGR02370 pyl_corrinoid methyl 50.3 1E+02 0.0022 32.6 9.8 98 888-1009 86-192 (197)
264 COG4122 Predicted O-methyltran 49.6 51 0.0011 35.6 7.3 55 887-942 85-143 (219)
265 cd04729 NanE N-acetylmannosami 49.1 1.8E+02 0.0038 31.1 11.5 80 905-1009 117-205 (219)
266 PRK09426 methylmalonyl-CoA mut 49.0 1E+02 0.0022 39.3 10.9 110 893-1025 593-707 (714)
267 PF07568 HisKA_2: Histidine ki 48.4 1.2E+02 0.0025 26.9 8.3 72 444-524 2-73 (76)
268 PRK10669 putative cation:proto 47.8 1.9E+02 0.004 35.8 13.0 109 886-1027 440-549 (558)
269 KOG1977 DNA mismatch repair pr 47.6 34 0.00074 42.1 6.0 44 636-679 49-98 (1142)
270 PRK03659 glutathione-regulated 47.4 1.1E+02 0.0024 38.3 10.8 95 886-1010 423-518 (601)
271 PF10087 DUF2325: Uncharacteri 47.3 1.9E+02 0.0041 26.7 9.9 64 888-956 1-70 (97)
272 PRK08385 nicotinate-nucleotide 47.1 1.7E+02 0.0037 32.8 11.2 97 888-1009 156-258 (278)
273 PLN02591 tryptophan synthase 46.9 54 0.0012 36.2 7.1 44 981-1024 78-127 (250)
274 KOG1979 DNA mismatch repair pr 45.8 25 0.00054 42.4 4.5 26 638-663 58-83 (694)
275 PLN03128 DNA topoisomerase 2; 45.7 29 0.00063 46.1 5.6 50 638-687 87-148 (1135)
276 PF01596 Methyltransf_3: O-met 45.7 50 0.0011 35.3 6.5 55 886-940 70-130 (205)
277 cd04726 KGPDC_HPS 3-Keto-L-gul 45.6 2.5E+02 0.0055 29.2 11.9 85 899-1009 92-185 (202)
278 PRK13587 1-(5-phosphoribosyl)- 45.5 1.3E+02 0.0027 32.9 9.7 55 932-1009 163-220 (234)
279 COG0512 PabA Anthranilate/para 45.3 34 0.00073 36.0 4.9 52 887-939 2-53 (191)
280 COG2185 Sbm Methylmalonyl-CoA 44.7 2.3E+02 0.005 28.5 10.4 113 892-1025 22-137 (143)
281 cd04723 HisA_HisF Phosphoribos 44.3 1.2E+02 0.0027 32.8 9.5 67 919-1009 148-217 (233)
282 cd00331 IGPS Indole-3-glycerol 44.2 2.6E+02 0.0056 29.8 11.9 80 906-1009 117-200 (217)
283 PRK00278 trpC indole-3-glycero 44.0 3E+02 0.0064 30.5 12.5 105 890-1018 139-253 (260)
284 PRK10558 alpha-dehydro-beta-de 43.6 2E+02 0.0042 31.9 10.9 99 902-1022 10-111 (256)
285 PRK05458 guanosine 5'-monophos 43.0 3.2E+02 0.0069 31.5 12.7 97 888-1009 113-229 (326)
286 PF06295 DUF1043: Protein of u 42.5 1E+02 0.0023 30.2 7.7 60 89-150 2-61 (128)
287 PTZ00108 DNA topoisomerase 2-l 41.6 23 0.00051 47.7 3.9 51 638-688 95-157 (1388)
288 TIGR00262 trpA tryptophan synt 41.6 76 0.0016 35.1 7.4 57 945-1023 73-135 (256)
289 PF01408 GFO_IDH_MocA: Oxidore 40.3 1.6E+02 0.0035 27.6 8.7 35 989-1023 72-108 (120)
290 PRK06543 nicotinate-nucleotide 40.3 2E+02 0.0043 32.4 10.3 68 912-1008 196-263 (281)
291 CHL00162 thiG thiamin biosynth 40.1 2.6E+02 0.0056 30.9 10.7 96 902-1023 129-236 (267)
292 PF10669 Phage_Gp23: Protein g 39.8 3.1E+02 0.0068 25.4 12.4 20 428-447 61-80 (121)
293 PRK10128 2-keto-3-deoxy-L-rham 39.1 2.6E+02 0.0057 31.2 11.1 83 918-1022 27-110 (267)
294 PRK13125 trpA tryptophan synth 39.1 2.7E+02 0.0057 30.5 11.1 90 898-1011 117-215 (244)
295 cd04724 Tryptophan_synthase_al 39.0 85 0.0018 34.3 7.2 42 981-1022 76-123 (242)
296 cd00452 KDPG_aldolase KDPG and 38.9 1.7E+02 0.0036 30.6 9.2 78 906-1010 93-171 (190)
297 PRK15369 two component system 38.8 2.3E+02 0.005 28.5 10.2 118 738-863 3-122 (211)
298 COG0157 NadC Nicotinate-nucleo 38.6 1.1E+02 0.0025 34.0 7.9 93 888-1007 160-259 (280)
299 PRK03562 glutathione-regulated 38.4 1.9E+02 0.004 36.4 10.9 93 886-1008 423-516 (621)
300 PRK10651 transcriptional regul 38.2 2.3E+02 0.0051 28.8 10.3 118 738-863 6-125 (216)
301 COG0742 N6-adenine-specific me 38.1 99 0.0022 32.5 7.1 55 887-941 67-124 (187)
302 PRK07896 nicotinate-nucleotide 37.7 1.2E+02 0.0027 34.1 8.2 71 912-1008 202-272 (289)
303 PRK10742 putative methyltransf 37.0 3.8E+02 0.0083 29.6 11.6 58 886-945 110-178 (250)
304 COG3105 Uncharacterized protei 36.3 2.4E+02 0.0053 27.7 8.7 54 92-145 14-72 (138)
305 cd00564 TMP_TenI Thiamine mono 35.8 2.7E+02 0.0059 28.5 10.2 75 909-1009 94-177 (196)
306 cd04730 NPD_like 2-Nitropropan 35.6 3.6E+02 0.0078 28.9 11.5 83 903-1010 95-185 (236)
307 cd02068 radical_SAM_B12_BD B12 35.4 2.3E+02 0.0051 27.2 9.0 103 898-1024 4-110 (127)
308 PF14689 SPOB_a: Sensor_kinase 35.2 93 0.002 26.5 5.3 44 440-487 15-58 (62)
309 COG5385 Uncharacterized protei 35.1 5.2E+02 0.011 26.6 17.1 121 440-577 18-139 (214)
310 PRK05458 guanosine 5'-monophos 34.4 1.2E+02 0.0026 34.9 7.6 66 920-1008 100-166 (326)
311 PRK00748 1-(5-phosphoribosyl)- 34.2 1.3E+02 0.0029 32.2 7.8 66 920-1009 149-219 (233)
312 PRK05848 nicotinate-nucleotide 34.0 2.8E+02 0.0061 31.0 10.3 71 913-1009 186-256 (273)
313 PRK07428 nicotinate-nucleotide 34.0 1.3E+02 0.0028 33.9 7.7 70 913-1008 200-269 (288)
314 cd04732 HisA HisA. Phosphorib 33.8 3.4E+02 0.0073 29.1 10.9 65 921-1009 150-218 (234)
315 PF01729 QRPTase_C: Quinolinat 33.4 1E+02 0.0022 31.9 6.2 72 912-1009 83-154 (169)
316 TIGR03239 GarL 2-dehydro-3-deo 33.4 3.2E+02 0.0069 30.1 10.5 84 917-1022 20-104 (249)
317 TIGR00736 nifR3_rel_arch TIM-b 32.8 1.6E+02 0.0034 32.2 7.9 29 981-1009 191-219 (231)
318 PRK11677 hypothetical protein; 32.7 2.6E+02 0.0057 27.8 8.7 60 89-150 6-65 (134)
319 PRK10403 transcriptional regul 32.4 3E+02 0.0065 27.9 10.0 116 739-862 7-124 (215)
320 CHL00200 trpA tryptophan synth 31.8 1.2E+02 0.0027 33.7 7.0 41 981-1021 91-137 (263)
321 PRK11840 bifunctional sulfur c 31.8 4.4E+02 0.0096 30.2 11.4 103 893-1022 181-295 (326)
322 PF05690 ThiG: Thiazole biosyn 31.7 2.5E+02 0.0055 30.6 8.9 84 900-1009 113-203 (247)
323 PRK00811 spermidine synthase; 31.6 1.9E+02 0.0042 32.4 8.7 55 887-943 101-162 (283)
324 TIGR00566 trpG_papA glutamine 31.1 1.1E+02 0.0024 32.0 6.2 48 889-937 2-49 (188)
325 PRK15411 rcsA colanic acid cap 30.8 4.6E+02 0.01 27.7 11.1 116 740-863 2-122 (207)
326 TIGR00693 thiE thiamine-phosph 30.7 3.1E+02 0.0068 28.4 9.7 70 915-1009 102-179 (196)
327 PRK13428 F0F1 ATP synthase sub 30.3 8.4E+02 0.018 29.3 14.2 63 390-452 6-73 (445)
328 cd02065 B12-binding_like B12 b 30.1 2E+02 0.0043 27.2 7.5 62 893-955 10-75 (125)
329 PRK07259 dihydroorotate dehydr 30.0 1.2E+02 0.0025 34.3 6.7 48 981-1028 234-287 (301)
330 PRK06096 molybdenum transport 29.6 1.8E+02 0.0038 32.8 7.8 71 912-1008 192-262 (284)
331 TIGR00735 hisF imidazoleglycer 29.4 3.5E+02 0.0076 29.7 10.2 42 981-1022 199-247 (254)
332 PRK13558 bacterio-opsin activa 29.2 1.7E+02 0.0036 36.9 8.6 116 739-862 8-125 (665)
333 cd04722 TIM_phosphate_binding 29.0 2.9E+02 0.0062 27.9 9.0 57 930-1009 135-198 (200)
334 KOG1978 DNA mismatch repair pr 28.9 51 0.0011 40.8 3.6 25 638-662 51-75 (672)
335 PRK15426 putative diguanylate 28.6 1.1E+03 0.025 28.6 28.4 63 87-149 24-86 (570)
336 PRK12724 flagellar biosynthesi 28.6 4.6E+02 0.01 31.3 11.3 109 886-1013 252-370 (432)
337 PRK06731 flhF flagellar biosyn 28.5 5.1E+02 0.011 28.9 11.2 107 887-1013 104-222 (270)
338 PRK14471 F0F1 ATP synthase sub 28.4 6.4E+02 0.014 25.6 14.6 60 390-449 13-77 (164)
339 COG3105 Uncharacterized protei 28.4 5.3E+02 0.012 25.4 9.5 15 394-408 13-27 (138)
340 PF11044 TMEMspv1-c74-12: Plec 27.9 3.1E+02 0.0068 21.8 6.5 27 388-414 7-33 (49)
341 TIGR03151 enACPred_II putative 27.6 3.8E+02 0.0083 30.4 10.3 83 902-1009 101-189 (307)
342 TIGR02855 spore_yabG sporulati 27.6 2.9E+02 0.0063 30.8 8.7 96 887-1005 105-221 (283)
343 PRK06231 F0F1 ATP synthase sub 27.6 7.7E+02 0.017 26.3 14.7 68 386-453 49-121 (205)
344 PRK14974 cell division protein 27.6 5.1E+02 0.011 30.0 11.3 108 886-1013 168-290 (336)
345 PRK07649 para-aminobenzoate/an 27.6 69 0.0015 33.8 4.0 48 889-937 2-49 (195)
346 PRK11889 flhF flagellar biosyn 27.4 5.1E+02 0.011 30.9 11.1 108 886-1013 269-388 (436)
347 PRK12704 phosphodiesterase; Pr 27.4 51 0.0011 40.4 3.3 43 983-1025 251-295 (520)
348 PRK06559 nicotinate-nucleotide 27.3 3.6E+02 0.0079 30.4 9.7 92 888-1008 169-267 (290)
349 KOG2335 tRNA-dihydrouridine sy 27.0 3.4E+02 0.0075 31.4 9.5 85 888-1009 147-232 (358)
350 PF07851 TMPIT: TMPIT-like pro 26.7 7.5E+02 0.016 28.5 12.1 80 414-495 7-90 (330)
351 PRK15029 arginine decarboxylas 26.6 3.6E+02 0.0077 34.7 10.6 72 739-811 1-81 (755)
352 PRK10100 DNA-binding transcrip 26.5 4.6E+02 0.0099 28.1 10.2 116 738-863 10-126 (216)
353 cd00331 IGPS Indole-3-glycerol 26.4 2.3E+02 0.0049 30.2 7.8 43 981-1023 72-116 (217)
354 PTZ00109 DNA gyrase subunit b; 26.2 12 0.00026 47.8 -2.2 18 671-688 246-264 (903)
355 PLN02335 anthranilate synthase 26.2 97 0.0021 33.4 4.9 51 886-937 18-68 (222)
356 PF05582 Peptidase_U57: YabG p 26.1 4.4E+02 0.0096 29.5 9.8 96 887-1005 106-222 (287)
357 smart00448 REC cheY-homologous 26.0 2.4E+02 0.0053 19.9 7.0 39 740-778 2-40 (55)
358 TIGR01037 pyrD_sub1_fam dihydr 25.8 99 0.0021 34.8 5.2 48 981-1028 234-287 (300)
359 PRK06106 nicotinate-nucleotide 25.8 2.1E+02 0.0045 32.2 7.5 68 912-1008 197-264 (281)
360 COG3452 Predicted periplasmic 25.2 3.7E+02 0.008 29.9 8.8 65 86-150 11-79 (297)
361 PRK01130 N-acetylmannosamine-6 25.2 1.9E+02 0.0042 30.8 7.1 42 981-1023 56-116 (221)
362 cd00429 RPE Ribulose-5-phospha 24.9 5.4E+02 0.012 26.8 10.4 86 903-1009 98-193 (211)
363 TIGR00336 pyrE orotate phospho 24.9 2.8E+02 0.006 28.6 7.9 32 883-914 105-139 (173)
364 TIGR00262 trpA tryptophan synt 24.9 8.5E+02 0.018 26.9 12.1 97 889-1011 119-228 (256)
365 TIGR00343 pyridoxal 5'-phospha 24.9 1.1E+02 0.0023 34.4 4.9 54 945-1021 184-244 (287)
366 TIGR01163 rpe ribulose-phospha 24.5 4.8E+02 0.01 27.2 9.9 100 889-1009 83-192 (210)
367 PRK09016 quinolinate phosphori 24.3 2.4E+02 0.0053 31.9 7.7 69 912-1009 211-279 (296)
368 PRK06774 para-aminobenzoate sy 24.3 89 0.0019 32.7 4.1 48 889-937 2-49 (191)
369 COG0159 TrpA Tryptophan syntha 24.1 1.5E+02 0.0033 32.9 5.9 47 946-1014 81-133 (265)
370 PRK11359 cyclic-di-GMP phospho 24.0 5.1E+02 0.011 33.1 11.8 105 900-1026 681-796 (799)
371 TIGR00095 RNA methyltransferas 24.0 2.1E+02 0.0045 30.0 6.8 68 887-954 73-144 (189)
372 PRK06978 nicotinate-nucleotide 23.9 2.3E+02 0.005 32.0 7.4 68 912-1008 208-275 (294)
373 TIGR02311 HpaI 2,4-dihydroxyhe 23.9 5.6E+02 0.012 28.1 10.4 84 918-1023 21-105 (249)
374 PRK05703 flhF flagellar biosyn 23.9 4.7E+02 0.01 31.2 10.5 109 886-1013 251-368 (424)
375 TIGR00064 ftsY signal recognit 23.7 6.5E+02 0.014 28.0 11.0 110 886-1010 100-225 (272)
376 PRK12723 flagellar biosynthesi 23.4 6.9E+02 0.015 29.5 11.6 109 886-1013 206-323 (388)
377 PLN02274 inosine-5'-monophosph 23.1 8.7E+02 0.019 29.8 12.7 98 887-1009 261-379 (505)
378 PLN02589 caffeoyl-CoA O-methyl 23.0 2.9E+02 0.0063 30.4 7.9 54 887-940 105-165 (247)
379 PRK10299 PhoPQ regulatory prot 22.9 81 0.0018 25.2 2.5 10 117-126 22-31 (47)
380 PF01564 Spermine_synth: Sperm 22.7 1.4E+02 0.0029 32.9 5.3 68 887-955 101-179 (246)
381 PF08452 DNAP_B_exo_N: DNA pol 22.2 31 0.00067 22.8 0.1 9 29-37 5-13 (22)
382 PRK13566 anthranilate synthase 22.0 2.3E+02 0.0049 36.3 7.7 53 883-937 523-575 (720)
383 PRK13453 F0F1 ATP synthase sub 21.9 8.8E+02 0.019 24.9 14.6 59 392-450 25-88 (173)
384 PLN02716 nicotinate-nucleotide 21.9 3.1E+02 0.0067 31.2 7.9 74 912-1008 206-288 (308)
385 PRK05637 anthranilate synthase 21.7 1.6E+02 0.0035 31.4 5.5 49 887-937 2-50 (208)
386 cd04727 pdxS PdxS is a subunit 21.6 1.5E+02 0.0032 33.2 5.2 43 981-1023 194-243 (283)
387 PRK04302 triosephosphate isome 21.6 1E+03 0.022 25.5 11.9 29 981-1009 173-201 (223)
388 PRK00536 speE spermidine synth 21.4 2.7E+02 0.0058 31.0 7.3 60 888-953 96-160 (262)
389 PRK02083 imidazole glycerol ph 21.4 6.3E+02 0.014 27.6 10.3 43 981-1023 197-246 (253)
390 COG0187 GyrB Type IIA topoisom 21.3 65 0.0014 39.7 2.6 51 638-688 69-131 (635)
391 PTZ00314 inosine-5'-monophosph 21.3 6.6E+02 0.014 30.7 11.2 99 886-1009 253-372 (495)
392 TIGR00078 nadC nicotinate-nucl 21.0 6E+02 0.013 28.3 9.9 93 888-1009 150-249 (265)
393 PLN02781 Probable caffeoyl-CoA 20.9 3.5E+02 0.0075 29.4 8.0 54 887-940 94-153 (234)
394 PRK10697 DNA-binding transcrip 20.8 2.3E+02 0.0051 27.5 5.8 34 120-153 76-109 (118)
395 PLN02823 spermine synthase 20.7 2.4E+02 0.0052 32.6 7.0 55 887-943 128-188 (336)
396 PRK04180 pyridoxal biosynthesi 20.6 1.6E+02 0.0035 33.1 5.2 42 981-1022 203-251 (293)
397 PRK14474 F0F1 ATP synthase sub 20.3 1.2E+03 0.025 25.7 14.6 25 387-411 7-31 (250)
398 cd01948 EAL EAL domain. This d 20.3 2.8E+02 0.006 29.3 7.1 94 900-1015 135-239 (240)
399 PRK08007 para-aminobenzoate sy 20.2 1.1E+02 0.0024 31.9 3.9 49 889-938 2-50 (187)
No 1
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=5.4e-60 Score=606.91 Aligned_cols=505 Identities=36% Similarity=0.521 Sum_probs=409.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeE
Q 001676 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506 (1033)
Q Consensus 427 ~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~ 506 (1033)
+++++++++.|++|++++||||||||++|+|+++++.+...++.+++|++.+..++++|..+|+++++++|+++++..++
T Consensus 283 ~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 362 (919)
T PRK11107 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLE 362 (919)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 34566777888999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeeccccc
Q 001676 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586 (1033)
Q Consensus 507 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 586 (1033)
..++++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++.....
T Consensus 363 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~---- 438 (919)
T PRK11107 363 NIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL---- 438 (919)
T ss_pred EeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec----
Confidence 9999999999999999999999999999999988888889999999999999999999999999998887754221
Q ss_pred chhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCC
Q 001676 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666 (1033)
Q Consensus 587 i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s 666 (1033)
..+...+.|+|+|||+|||++.++++|+||++.+.+
T Consensus 439 --------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 474 (919)
T PRK11107 439 --------------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS 474 (919)
T ss_pred --------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC
Confidence 112235789999999999999999999999999988
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECC
Q 001676 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746 (1033)
Q Consensus 667 ~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd~ 746 (1033)
+++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+........ .......+.|.+++++|+
T Consensus 475 ~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~ 544 (919)
T PRK11107 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEP 544 (919)
T ss_pred CCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeC
Confidence 8888899999999999999999999999999999999999999965332110 111234578899999999
Q ss_pred chhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEEecc
Q 001676 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 826 (1033)
Q Consensus 747 ~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~s 826 (1033)
++..+......+..+|+.+....+..+ + ....++.++++......... .......+..... .+.++++..+
T Consensus 545 ~~~~~~~l~~~L~~~g~~v~~~~~~~~-l-----~~~~~d~il~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~i~~~~~ 615 (919)
T PRK11107 545 NSAAAQATLDILSETPLEVTYSPTLSQ-L-----PEAHYDILLLGLPVTFREPL--TMLHERLAKAKSM-TDFLILALPC 615 (919)
T ss_pred CHHHHHHHHHHHHHCCCEEEEcCCHHH-h-----ccCCCCEEEecccCCCCCCH--HHHHHHHHhhhhc-CCcEEEEeCC
Confidence 999999999999999999999888776 2 23457777777655432221 1112222221111 2223333332
Q ss_pred CCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHH
Q 001676 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906 (1033)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~L 906 (1033)
......... ...+...++.||+..+.+...+............. .......+.+|||||||+.++..++.+|
T Consensus 616 ~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~vLivdd~~~~~~~l~~~L 687 (919)
T PRK11107 616 HEQVLAEQL-KQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLP-------PTDESRLPLTVMAVDDNPANLKLIGALL 687 (919)
T ss_pred cchhhHHHH-hhCCCceEECCCCCHHHHHHHHHHhhccccccccc-------ccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 222211111 22355678999999999888877654211110000 0011123468999999999999999999
Q ss_pred hhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEE
Q 001676 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 986 (1033)
Q Consensus 907 ~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIa 986 (1033)
+..|+.|.++.+|.+|++.+. .+.||+||||+.||+|||+++++.||+.. ..+++|||+
T Consensus 688 ~~~~~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~--------------------~~~~~pii~ 746 (919)
T PRK11107 688 EEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLP--------------------HNQNTPIIA 746 (919)
T ss_pred HHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcc--------------------cCCCCCEEE
Confidence 999999999999999999985 57899999999999999999999999742 134689999
Q ss_pred EccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 987 MTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 987 lTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
+|++...+...+|+++||++|+.||++.++|...+.++...
T Consensus 747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998754
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=3.8e-59 Score=592.35 Aligned_cols=489 Identities=29% Similarity=0.448 Sum_probs=385.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001676 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499 (1033)
Q Consensus 420 ~~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skie 499 (1033)
.++++++++++++++++|++|+++|||||||||++|.|++++|.....+++++++++.+..++++|..+|+++|+++|++
T Consensus 430 e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie 509 (924)
T PRK10841 430 EESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIE 509 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677788888999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred cCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEE
Q 001676 500 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579 (1033)
Q Consensus 500 sg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~ 579 (1033)
++.+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|++..
T Consensus 510 ~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~ 589 (924)
T PRK10841 510 SEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRV 589 (924)
T ss_pred CCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999998887643
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001676 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
. ...+.|+|+|||+||+++.+++||+|
T Consensus 590 ~-----------------------------------------------------~~~l~i~V~DtG~GI~~e~~~~lFep 616 (924)
T PRK10841 590 D-----------------------------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDP 616 (924)
T ss_pred e-----------------------------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcc
Confidence 1 12478999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCc
Q 001676 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 739 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 739 (1033)
|++.+.+.++..+|+||||+||++|+++|||+|+++|.+|+||+|+|++|+....... ........|.
T Consensus 617 F~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~------------~~~~~~~~g~ 684 (924)
T PRK10841 617 FFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ------------KKGVEGLQGK 684 (924)
T ss_pred cccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc------------cccCcccCCC
Confidence 9998877777778999999999999999999999999999999999999986432211 1122346788
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++.+++.........++++|.++....... ....+.++.|.......... .
T Consensus 685 ~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~---------~~~~d~~i~d~~~~~~~~~~-----------------~ 738 (924)
T PRK10841 685 RCWLAVRNASLEQFLETLLQRSGIQVQRYEGQE---------PTPEDVLITDDPVQKKWQGR-----------------A 738 (924)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCeEEEccccc---------CCcCcEEEEcCccccccchh-----------------h
Confidence 899999998888899999999999988765321 11223333332211000000 0
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCc-chhhccCCCCeEEEEeCCHHH
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVN 898 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ILIVDDn~~n 898 (1033)
.+.+... ..... ........+.+|.....+...+.................+. ........+.+|||||||+.+
T Consensus 739 ~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~ 813 (924)
T PRK10841 739 VITFCRR----HIGIP-LEIAPGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMMILVVDDHPIN 813 (924)
T ss_pred hhhhhhc----cccCh-hhcccCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCEEEEECCCHHH
Confidence 0000000 00000 00001123345555566665555554332211111111110 001112245689999999999
Q ss_pred HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccC
Q 001676 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 978 (1033)
Q Consensus 899 ~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~ 978 (1033)
+..+..+|++.||.|.++.||.+|++.+. .+.||+||||++||+|||++++++||+.
T Consensus 814 ~~~l~~~L~~~G~~v~~a~~g~eal~~l~-~~~~DlVl~D~~mP~mdG~el~~~ir~~---------------------- 870 (924)
T PRK10841 814 RRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLTDVNMPNMDGYRLTQRLRQL---------------------- 870 (924)
T ss_pred HHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhc----------------------
Confidence 99999999999999999999999999985 5679999999999999999999999974
Q ss_pred CCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 979 NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 979 ~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
...+|||++|++...+...+|+++||++|+.||++.++|...+.++...
T Consensus 871 ~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 871 GLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 2358999999999999999999999999999999999999999987543
No 3
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-61 Score=591.87 Aligned_cols=767 Identities=33% Similarity=0.387 Sum_probs=553.9
Q ss_pred cceeeeEeeeCCCceEEeeccCCCcccHHHHHHHHHcCCceeecceeecccCCceEEEEEeeeccCCCCCCChhHHH-Hh
Q 001676 225 EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERI-EA 303 (1033)
Q Consensus 225 ~~Y~pvi~~~~~~~~~~g~D~~s~~~~~~~i~~Ar~tg~~~~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~-~~ 303 (1033)
.+|.|+++...+..+...+|...+.+.+.+...++-+...+++.++....++..+...++.++...++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999999999999999999999999999999999998887777777777777776666554444443 33
Q ss_pred hcceeeeeeeHHHHHHHHHHhhhccccEEEEeeccCCCCCceeccccccCCCCceEEeeccCCCccccccceee--eccc
Q 001676 304 TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR--FKQK 381 (1033)
Q Consensus 304 ~~G~~~~~~~v~~l~~~~l~~~~~~~~i~v~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 381 (1033)
...+-...++........++...........++...........|+........+++....+..+.+.+...++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 33444455666555555555444444444444444444444455666666655566666666666666666666 3333
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHhhHHHHHHHHHHH
Q 001676 382 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 459 (1033)
Q Consensus 382 ~~~~~~~~~~~i~~lvi~~l~~~i~~~~~~r~~~~~~~~~~~~e~~~~ae~a~~aKs~--Fla~vSHELRTPLn~I~g~l 459 (1033)
..+.+.++......................|...++.....+.+.....+++...+++ |+++++|||||||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 3444444444444444444444556667777777776667777777777888888888 999999999999999 888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeC
Q 001676 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 539 (1033)
Q Consensus 460 elL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~ 539 (1033)
..+.++..+.+++.+.+..+.++..++.++|+++|.+++++|..++...+|++..+++.+++.+.+.+..++..+....+
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCcccccc
Q 001676 540 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619 (1033)
Q Consensus 540 ~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 619 (1033)
...|..+.+|+.+++||+.|+++||+|||..|+|.++++..++......+.... ....+..+....+....+.
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~-~~e~~~~~~~~~~~~~~~~------ 394 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRA-KEEAHMAGKARIDFLQKMS------ 394 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhh-hhhhhhccchhhhHHHHhc------
Confidence 989999999999999999999999999999999999998876543222111000 0000000010000000000
Q ss_pred CCCCCCCCC---CCCCCceeEEEEEEEcCCCCChhhHhh-ccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEE
Q 001676 620 QDGSTSPFK---SSSADLINLIVSVEDTGQGIPLEAQSR-IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695 (1033)
Q Consensus 620 ~~~~~~~~~---~~~~~~~~l~i~V~DtG~GI~~e~~~~-IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~ 695 (1033)
.+...+.. ..........+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|++||++++++|+|.+.+.
T Consensus 395 -~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~ 473 (786)
T KOG0519|consen 395 -HAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDI 473 (786)
T ss_pred -cccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhh
Confidence 00000000 001112345688999999999999998 9999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHH
Q 001676 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775 (1033)
Q Consensus 696 S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l 775 (1033)
+....|++|+|++++....+......... .......+.|..+.+.+....+..+.....+.+|+.|++..+...++
T Consensus 474 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~ 549 (786)
T KOG0519|consen 474 SCISLGKTFSFTLDLLTNLPKSVVGDEKR----LFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAF 549 (786)
T ss_pred hhhccCceeeEEEEeccCCCccchhhhhh----hhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhh
Confidence 99999999999999987655433211111 12334567788777777777777777777788888888776444443
Q ss_pred HHHhcCCcc-ceEEEeeccccccCccc-hHH--HHHHHhhcCCC-CCceEEEEeccCCccccCcCCCCCCCCceeccCCc
Q 001676 776 SQIASGSKI-INMILVEQEVWEKDTSV-STL--FVNNLRKLGCG-FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 850 (1033)
Q Consensus 776 ~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~~--~~~~~~~~~~~-~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~ 850 (1033)
-........ .....++...|...... +.. +....+..... ..+..+.++.+.......+.......+....+|..
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (786)
T KOG0519|consen 550 WFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSP 629 (786)
T ss_pred hhcccccccchheEEeeeccccccCCCcchhhhhhhccccchhhcccccccccccchhhHHhhhcccccccccccCCccH
Confidence 332222222 34555566555333311 111 11111111110 01233333333222222222222222345556777
Q ss_pred hHHHHHHHHHHhcC-CCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCC
Q 001676 851 SSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929 (1033)
Q Consensus 851 ~s~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~ 929 (1033)
...+..+....++. +.+..............+.+.|++|||||||++|+++++.+|+++|++++++.+|.||+++++++
T Consensus 630 s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~ 709 (786)
T KOG0519|consen 630 SLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPP 709 (786)
T ss_pred HHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCC
Confidence 77777777776654 22222222222222245677899999999999999999999999999999999999999999878
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 930 HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 930 ~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+.||+||||+|||+|||+|++++||+.+ .+++|||||||+++++..++|+++|||+||+
T Consensus 710 ~~y~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~ 768 (786)
T KOG0519|consen 710 HSYDVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVALTADADPSTEEECLEVGMDGYLS 768 (786)
T ss_pred CcccEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEEEecCCcHHHHHHHHHhCCceEEc
Confidence 9999999999999999999999999853 2689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 001676 1010 KPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 1010 KP~~~~~L~~~v~r~~~ 1026 (1033)
|||+.+.|...+.+|+.
T Consensus 769 KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 769 KPFTLEKLVKILREFLL 785 (786)
T ss_pred ccccHHHHHHHHHHHhc
Confidence 99999999999999875
No 4
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=9e-54 Score=549.58 Aligned_cols=427 Identities=34% Similarity=0.509 Sum_probs=334.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001676 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (1033)
Q Consensus 423 ~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~ 502 (1033)
+.+.+++++.++..|++|++++||||||||++|.|++++|.+...+.+++++++.+..++++|..+++++|+++|+|++.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~ 463 (921)
T PRK15347 384 LAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQ 463 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445566677788899999999999999999999999999888899999999999999999999999999999999999
Q ss_pred ceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeec
Q 001676 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (1033)
Q Consensus 503 l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~ 582 (1033)
+.++..++++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.|||+||+|||++|.|.|++...
T Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~-- 541 (921)
T PRK15347 464 MTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH-- 541 (921)
T ss_pred ccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc--
Confidence 999999999999999999999999999999999999888888899999999999999999999999999988876421
Q ss_pred ccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccc
Q 001676 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (1033)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (1033)
...+.|+|+|||+||+++.+++||+||+|
T Consensus 542 ---------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 570 (921)
T PRK15347 542 ---------------------------------------------------EQQLCFTVEDTGCGIDIQQQQQIFTPFYQ 570 (921)
T ss_pred ---------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhcCccc
Confidence 12478999999999999999999999998
Q ss_pred cCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEE
Q 001676 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 742 (1033)
Q Consensus 663 ~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vl 742 (1033)
.+. ..+|+||||+||++++++|||+|.++|.+|+||+|+|++|+........ +.+..
T Consensus 571 ~~~----~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-----------------~~~~~-- 627 (921)
T PRK15347 571 ADT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-----------------LKGEL-- 627 (921)
T ss_pred CCC----CCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-----------------ccccc--
Confidence 754 3479999999999999999999999999999999999999854221100 00000
Q ss_pred EECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEE
Q 001676 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822 (1033)
Q Consensus 743 vvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 822 (1033)
.........+..+|.............
T Consensus 628 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 654 (921)
T PRK15347 628 ------SAPLALHRQLSAWGITCQPGHQNPALL----------------------------------------------- 654 (921)
T ss_pred ------cchHHHHHHHHHcCCcccccccchhhc-----------------------------------------------
Confidence 000111223344444322110000000
Q ss_pred EeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHH
Q 001676 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902 (1033)
Q Consensus 823 l~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl 902 (1033)
.+....-| ..+...+............. ..+ ....+.+||||||++.++..+
T Consensus 655 ------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~iLivdd~~~~~~~l 706 (921)
T PRK15347 655 ------------------DPELAYLP---GRLYDLLQQIIQGAPNEPVI--NLP-----LQPWQLQILLVDDVETNRDII 706 (921)
T ss_pred ------------------chhhhhcc---hHHHHHHHHHhhcCCCcccc--cCC-----CCcccCCEEEEeCCHHHHHHH
Confidence 00000000 11111111111111000000 001 012245899999999999999
Q ss_pred HHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCC
Q 001676 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 982 (1033)
Q Consensus 903 ~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~i 982 (1033)
..+|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+.+.. ..+++
T Consensus 707 ~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~------------------~~~~~ 767 (921)
T PRK15347 707 GMMLVELGQQVTTAASGTEALELGR-QHRFDLVLMDIRMPGLDGLETTQLWRDDPNN------------------LDPDC 767 (921)
T ss_pred HHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhh------------------cCCCC
Confidence 9999999999999999999999985 5789999999999999999999999974211 13578
Q ss_pred cEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 983 PILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 983 PIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
|||++|+....+...+|+++||++|+.||++.++|..++.+..
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=2e-54 Score=546.01 Aligned_cols=371 Identities=33% Similarity=0.532 Sum_probs=322.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeE
Q 001676 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506 (1033)
Q Consensus 427 ~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~ 506 (1033)
.++++.++++|++|+++|||||||||++|.|+++++.++..+++++++++.+..++++|..+++++++++|++++++.++
T Consensus 273 e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 352 (779)
T PRK11091 273 QDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLD 352 (779)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEE
Confidence 34556667789999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred eEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeeccccc
Q 001676 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586 (1033)
Q Consensus 507 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~ 586 (1033)
..++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+||++.|.|.|.+....
T Consensus 353 ~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~----- 427 (779)
T PRK11091 353 NQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE----- 427 (779)
T ss_pred eeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc-----
Confidence 999999999999999999999999999999988888888999999999999999999999999998888764310
Q ss_pred chhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccccc-CC
Q 001676 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV-GP 665 (1033)
Q Consensus 587 i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~-d~ 665 (1033)
...+.|+|.|||+|||++.+++||+|||++ +.
T Consensus 428 -----------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~ 460 (779)
T PRK11091 428 -----------------------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDS 460 (779)
T ss_pred -----------------------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCC
Confidence 113789999999999999999999999998 55
Q ss_pred CCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEEC
Q 001676 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745 (1033)
Q Consensus 666 s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd 745 (1033)
+.++..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+.........
T Consensus 461 ~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~-------------------------- 514 (779)
T PRK11091 461 HGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED-------------------------- 514 (779)
T ss_pred CCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc--------------------------
Confidence 566667899999999999999999999999999999999999997432110000
Q ss_pred CchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEEec
Q 001676 746 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825 (1033)
Q Consensus 746 ~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 825 (1033)
.+
T Consensus 515 -----------------------------------------------------------------------~~------- 516 (779)
T PRK11091 515 -----------------------------------------------------------------------AF------- 516 (779)
T ss_pred -----------------------------------------------------------------------cc-------
Confidence 00
Q ss_pred cCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHH
Q 001676 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905 (1033)
Q Consensus 826 s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~ 905 (1033)
... .....+.+||||||++.++..+..+
T Consensus 517 ----------~~~------------------------------------------~~~~~~~~ILivdD~~~~~~~l~~~ 544 (779)
T PRK11091 517 ----------DED------------------------------------------DMPLPALNILLVEDIELNVIVARSV 544 (779)
T ss_pred ----------ccc------------------------------------------cccccccceEEEcCCHHHHHHHHHH
Confidence 000 0001235799999999999999999
Q ss_pred HhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCC-CcE
Q 001676 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH-VPI 984 (1033)
Q Consensus 906 L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~-iPI 984 (1033)
|++.|+.|.++.+|.+|++.+. .+.||+||||++||+|||++++++||+..+ ..+ +||
T Consensus 545 L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~--------------------~~~~~~i 603 (779)
T PRK11091 545 LEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIARELRERYP--------------------REDLPPL 603 (779)
T ss_pred HHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHHHhccc--------------------cCCCCcE
Confidence 9999999999999999999985 578999999999999999999999997421 124 499
Q ss_pred EEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 985 LAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 985 IalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
|++|++.... ..+|+++||++|+.||++.++|...+.+++..
T Consensus 604 i~~ta~~~~~-~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 604 VALTANVLKD-KKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEEECCchHh-HHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 9999987654 67899999999999999999999999998754
No 6
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=3.5e-54 Score=556.19 Aligned_cols=372 Identities=39% Similarity=0.630 Sum_probs=327.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 001676 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503 (1033)
Q Consensus 424 ~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l 503 (1033)
.+.+.++++++++|++|++++||||||||++|.|++++|.+..+++++++|++.+..++++|..+++++++++|+|++..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~ 530 (968)
T TIGR02956 451 AKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHL 530 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566778889999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred eeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecc
Q 001676 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583 (1033)
Q Consensus 504 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~ 583 (1033)
.++..+|++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.|||+||+|||+.|.|.|.+...++
T Consensus 531 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~- 609 (968)
T TIGR02956 531 SISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD- 609 (968)
T ss_pred eeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC-
Confidence 9999999999999999999999999999999999988888889999999999999999999999999998887753211
Q ss_pred cccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccccc
Q 001676 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (1033)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (1033)
..+.|+|+|+|+|||++.+++||+||++.
T Consensus 610 ---------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 638 (968)
T TIGR02956 610 ---------------------------------------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQA 638 (968)
T ss_pred ---------------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhcc
Confidence 01789999999999999999999999998
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEE
Q 001676 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 743 (1033)
Q Consensus 664 d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlv 743 (1033)
+ ..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+........ .
T Consensus 639 ~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~--------------~---------- 692 (968)
T TIGR02956 639 D--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED--------------S---------- 692 (968)
T ss_pred C--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc--------------c----------
Confidence 7 3455689999999999999999999999999999999999999853211000 0
Q ss_pred ECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEE
Q 001676 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823 (1033)
Q Consensus 744 vd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 823 (1033)
..
T Consensus 693 -------------------------------------------------------------------------~~----- 694 (968)
T TIGR02956 693 -------------------------------------------------------------------------AT----- 694 (968)
T ss_pred -------------------------------------------------------------------------cc-----
Confidence 00
Q ss_pred eccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHH
Q 001676 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903 (1033)
Q Consensus 824 ~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~ 903 (1033)
.. .....+.+|||||||+.++..+.
T Consensus 695 ------------~~-------------------------------------------~~~~~~~~iLvvdd~~~~~~~l~ 719 (968)
T TIGR02956 695 ------------LT-------------------------------------------VIDLPPQRVLLVEDNEVNQMVAQ 719 (968)
T ss_pred ------------cc-------------------------------------------cccccccceEEEcCcHHHHHHHH
Confidence 00 00011347999999999999999
Q ss_pred HHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCc
Q 001676 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVP 983 (1033)
Q Consensus 904 ~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iP 983 (1033)
.+|+..|+.|.++.+|.+|++.+. .+.||+||||++||+|||+++++.||+..+ ...++|
T Consensus 720 ~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~-------------------~~~~~p 779 (968)
T TIGR02956 720 GFLTRLGHKVTLAESGQSALECFH-QHAFDLALLDINLPDGDGVTLLQQLRAIYG-------------------AKNEVK 779 (968)
T ss_pred HHHHHcCCEEEEECCHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHHHhCcc-------------------ccCCCe
Confidence 999999999999999999999995 478999999999999999999999997432 111389
Q ss_pred EEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 984 ILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 984 IIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
||++|++...+...+|+++||++|+.||++.++|...+.+++.
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999874
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=1.7e-52 Score=537.41 Aligned_cols=371 Identities=33% Similarity=0.544 Sum_probs=323.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001676 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 421 ~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
.+..+.+.+++++.++|++|++++||||||||++|.|++++|.+...++.++++++.+..++++|..++++++++++++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~ 507 (914)
T PRK11466 428 IEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEA 507 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566777888899999999999999999999999999998888888999999999999999999999999999998
Q ss_pred CC--ceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Q 001676 501 GK--LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 578 (1033)
Q Consensus 501 g~--l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~ 578 (1033)
|. +.++.++|++.+++++++..+...+..|++.+.+++++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+.
T Consensus 508 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~ 587 (914)
T PRK11466 508 GGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSR 587 (914)
T ss_pred CCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 84 5677789999999999999999999999999999998888888999999999999999999999999999888764
Q ss_pred EeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccC
Q 001676 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658 (1033)
Q Consensus 579 ~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe 658 (1033)
.. ...+.|.|+|||+|||++.++++|+
T Consensus 588 ~~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~ 614 (914)
T PRK11466 588 TD-----------------------------------------------------GEQWLVEVEDSGCGIDPAKLAEIFQ 614 (914)
T ss_pred Ec-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHHhc
Confidence 21 1246799999999999999999999
Q ss_pred cccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCC
Q 001676 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQG 738 (1033)
Q Consensus 659 pF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 738 (1033)
||++.+ ...+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+........ .
T Consensus 615 ~f~~~~----~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~---------------~---- 671 (914)
T PRK11466 615 PFVQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP---------------K---- 671 (914)
T ss_pred hhhcCC----CCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccc---------------c----
Confidence 999863 23579999999999999999999999999999999999999742110000 0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+
T Consensus 672 ------------------------------------------------------------------------------~~ 673 (914)
T PRK11466 672 ------------------------------------------------------------------------------TV 673 (914)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHH
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n 898 (1033)
.. .....+++|||||||+.+
T Consensus 674 -----------------~~-------------------------------------------~~~~~~~~vLivdD~~~~ 693 (914)
T PRK11466 674 -----------------NQ-------------------------------------------AVRLDGLRLLLIEDNPLT 693 (914)
T ss_pred -----------------cc-------------------------------------------ccccCCcceEEEeCCHHH
Confidence 00 000124589999999999
Q ss_pred HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccC
Q 001676 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 978 (1033)
Q Consensus 899 ~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~ 978 (1033)
+..+..+|+..|+.|.++.+|.+|++.+...++||+||||++||+|||++++++||+.
T Consensus 694 ~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~---------------------- 751 (914)
T PRK11466 694 QRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ---------------------- 751 (914)
T ss_pred HHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhh----------------------
Confidence 9999999999999999999999999987544679999999999999999999999973
Q ss_pred CCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 979 NFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 979 ~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|++...+...+|+++|+++|+.||++.++|...|.+++..
T Consensus 752 ~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 752 YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 2468999999999999999999999999999999999999999988753
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=3.4e-48 Score=510.59 Aligned_cols=383 Identities=31% Similarity=0.480 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001676 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT-QQDYVRTAQASGKALVSLINEVLDQ 495 (1033)
Q Consensus 417 ~~~~~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~-q~~~l~~i~~s~~~L~~LIndlLd~ 495 (1033)
++..+.+++.+++++++..++.+|++++||||||||++|.|++++|.+...+.+ ..++++.+..++++|..++++++++
T Consensus 692 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~ 771 (1197)
T PRK09959 692 RDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDV 771 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666777778889999999999999999999999999976655544 4578899999999999999999999
Q ss_pred HHhhcCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEE
Q 001676 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575 (1033)
Q Consensus 496 skiesg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v 575 (1033)
+|++++...+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|+||+.||++||+||++.|.+.+
T Consensus 772 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i 851 (1197)
T PRK09959 772 DKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKI 851 (1197)
T ss_pred HHhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999999999999999999999999999999999887654333446889999999999999999999999998777
Q ss_pred EEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhh
Q 001676 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655 (1033)
Q Consensus 576 ~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~ 655 (1033)
.+..... ..+...+.|+|.|+|+|||++.+++
T Consensus 852 ~~~~~~~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~ 883 (1197)
T PRK09959 852 TTSLGHI------------------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQ 883 (1197)
T ss_pred EEEEeee------------------------------------------------cCCceEEEEEEEEcCCCCCHHHHHH
Confidence 6543210 0112346799999999999999999
Q ss_pred ccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 001676 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735 (1033)
Q Consensus 656 IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1033)
||+||++.+. .+..+|+||||+|||+|++.|||+|+++|.+|+||+|++++|+.........
T Consensus 884 iF~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~---------------- 945 (1197)
T PRK09959 884 LFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATV---------------- 945 (1197)
T ss_pred hhcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhccc----------------
Confidence 9999998643 2345799999999999999999999999999999999999997421100000
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 736 ~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
T Consensus 946 -------------------------------------------------------------------------------- 945 (1197)
T PRK09959 946 -------------------------------------------------------------------------------- 945 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCC
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn 895 (1033)
.+ ... .|. ....+.+||||||+
T Consensus 946 -~~-----------------~~~--------~~~--------------------------------~~~~~~~iLivdd~ 967 (1197)
T PRK09959 946 -EA-----------------KAE--------QPI--------------------------------TLPEKLSILIADDH 967 (1197)
T ss_pred -cc-----------------ccc--------ccc--------------------------------ccccCceEEEcCCC
Confidence 00 000 000 00113479999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhc
Q 001676 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 975 (1033)
Q Consensus 896 ~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~ 975 (1033)
+.++..+..+|+..|+.+.++.++.+|++.+. .+.||+||+|++||+|||+++++.||+.
T Consensus 968 ~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i~~~------------------- 1027 (1197)
T PRK09959 968 PTNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKLREQ------------------- 1027 (1197)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc-------------------
Confidence 99999999999999999999999999999985 5789999999999999999999999963
Q ss_pred ccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 976 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 976 ~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+....+...+|+++|+++|+.||++.++|...|.++..
T Consensus 1028 ---~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1028 ---NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred ---CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 236899999999999999999999999999999999999999987643
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=2.8e-45 Score=459.66 Aligned_cols=240 Identities=20% Similarity=0.321 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001676 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 421 ~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
+++.+++++++++.++|++|+++|||||||||++|.|+++++.+...+++++++++.+..++++|..+++++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666777888889999999999999999999999999999988777888899999999999999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe
Q 001676 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~ 580 (1033)
|+..++..+|++.+++++++..+...+..|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999888766677889999999999999999999999999988877532
Q ss_pred ecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcc
Q 001676 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (1033)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (1033)
.. ....+.|+|.|||+|||++.+++||+||
T Consensus 594 ~~--------------------------------------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF 623 (894)
T PRK10618 594 ES--------------------------------------------------SPDRLTIRILDTGAGVSIKELDNLHFPF 623 (894)
T ss_pred cC--------------------------------------------------CCcEEEEEEEECCCCCCHHHHHHhcCcc
Confidence 11 1135789999999999999999999999
Q ss_pred cccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 661 ~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
++.+. ..+..+|+||||+|||+||++|||+|+++|.+|+||+|+|++|+.
T Consensus 624 ~t~~~-~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 624 LNQTQ-GDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred ccCCC-CCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 98643 234557999999999999999999999999999999999999973
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=5.2e-43 Score=443.69 Aligned_cols=363 Identities=19% Similarity=0.277 Sum_probs=291.5
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT-ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~-~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
+..+|++++||||||||++|.|+++++.+. ..+...+++++.+..+++++..+++++++++|...+. ..++++.+
T Consensus 449 ~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~----~~~~~l~~ 524 (828)
T PRK13837 449 AVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGERN----TKPFDLSE 524 (828)
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CcEEcHHH
Confidence 567899999999999999999999987653 2345667899999999999999999999999965543 46799999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeecccccchhhhhh
Q 001676 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++ .|.|.|++.........
T Consensus 525 ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~------- 595 (828)
T PRK13837 525 LVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPK------- 595 (828)
T ss_pred HHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccccc-------
Confidence 999999988754 45788888877654 446899999999999999999999985 46777776543210000
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001676 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
.. ......+...+.|+|+|+|+|||++.+++||+||++.+. +|
T Consensus 596 -----~~--------------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G 638 (828)
T PRK13837 596 -----VL--------------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GG 638 (828)
T ss_pred -----cc--------------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CC
Confidence 00 000011234688999999999999999999999997432 79
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchhhHHH
Q 001676 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKV 753 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd~~~~~~~v 753 (1033)
+||||+|||++++.|||+|+++|.+|+||+|+|++|......... ..
T Consensus 639 ~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~-----------~~---------------------- 685 (828)
T PRK13837 639 TGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAP-----------QA---------------------- 685 (828)
T ss_pred CcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCc-----------cc----------------------
Confidence 999999999999999999999999999999999999743111000 00
Q ss_pred HHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEEeccCCccccC
Q 001676 754 SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833 (1033)
Q Consensus 754 ~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~s~~~~~~~ 833 (1033)
T Consensus 686 -------------------------------------------------------------------------------- 685 (828)
T PRK13837 686 -------------------------------------------------------------------------------- 685 (828)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhhCCCEE
Q 001676 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 913 (1033)
Q Consensus 834 ~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v 913 (1033)
... |. . .....+.+|||||||+.++..+...|...||.+
T Consensus 686 -~~~----------~~------------------------~------~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v 724 (828)
T PRK13837 686 -FFG----------PG------------------------P------LPRGRGETVLLVEPDDATLERYEEKLAALGYEP 724 (828)
T ss_pred -cCC----------Cc------------------------c------cCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEE
Confidence 000 00 0 000124589999999999999999999999999
Q ss_pred EEEcChHHHHHHhCCC-CCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCc
Q 001676 914 VCVERGKKATELLMPP-HQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 992 (1033)
Q Consensus 914 ~~a~~g~eAl~~l~~~-~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~ 992 (1033)
..+.++.+|++.+... ..||+||+ .||.|+|+++++.|+.. .+.+|||++|+...
T Consensus 725 ~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~----------------------~~~ipIIvls~~~~ 780 (828)
T PRK13837 725 VGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAA----------------------APTLPIILGGNSKT 780 (828)
T ss_pred EEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhh----------------------CCCCCEEEEeCCCc
Confidence 9999999999988432 35899999 79999999999999863 34689999999999
Q ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 993 QATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 993 ~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.....+++++| ++|+.||++.++|..+|.+++..
T Consensus 781 ~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 781 MALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred hhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 99999999999 99999999999999999998764
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-41 Score=357.52 Aligned_cols=227 Identities=27% Similarity=0.474 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEee
Q 001676 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT--QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (1033)
Q Consensus 433 a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~--q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~ 510 (1033)
.++.+..|.|++||||||||+++.+++|.|.+....+. ...++..-+...++|.+||||||.+||++....+++.+-+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34556789999999999999999999999988765443 5678999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhccCcE-EEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccch
Q 001676 511 NLRAILDDVLSLFSGKSQDKGVE-LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIE 588 (1033)
Q Consensus 511 dL~~ll~~v~~~~~~~a~~k~i~-l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~ 588 (1033)
|+...+.+++..|.....+..+. +.-.+ +.-+.++..|++++.||+.|+++||+||+|. |.|++.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998775544443 32233 3446788999999999999999999999977 5677666421
Q ss_pred hhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC
Q 001676 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (1033)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s 668 (1033)
..++.|+|.|.|.|||.+++++||++||++|..++
T Consensus 372 ---------------------------------------------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARs 406 (459)
T COG5002 372 ---------------------------------------------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARS 406 (459)
T ss_pred ---------------------------------------------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhh
Confidence 12578999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 001676 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (1033)
Q Consensus 669 ~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (1033)
|..|||||||+|+|.+|+.|||.||.+|+.|+||+|+|+||+...
T Consensus 407 R~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 407 RKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred hcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccCc
Confidence 999999999999999999999999999999999999999998643
No 12
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=1.2e-36 Score=366.93 Aligned_cols=369 Identities=20% Similarity=0.240 Sum_probs=285.6
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEee
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-----LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~-----l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~ 510 (1033)
...++++.++||+||||+.|.++++++.... ......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3457899999999999999999999875321 223456788889999999999999999998753 3445678
Q ss_pred cHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchh
Q 001676 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEV 589 (1033)
Q Consensus 511 dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i 589 (1033)
++..+++.+...+.. ...+++.+.+.+++..+ .+.+|+.++.||+.||+.||+||++. |.|.|.+........
T Consensus 238 ~l~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAER-TLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHHH-hcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 999999988776653 34577888777666554 47789999999999999999999865 444444322110000
Q ss_pred hhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCC
Q 001676 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (1033)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~ 669 (1033)
. ...| ....+...+.|+|.|+|+|||++.++++|+||++.+.
T Consensus 312 -------~-----------~~~~----------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 312 -------D-----------LAMY----------------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred -------c-----------cccc----------------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 0 0000 0011223578999999999999999999999997532
Q ss_pred CCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCcEEEEECCchh
Q 001676 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 749 (1033)
Q Consensus 670 ~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vlvvd~~~~ 749 (1033)
..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|......... +
T Consensus 354 ~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~--------------~---------------- 403 (540)
T PRK13557 354 EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE--------------Q---------------- 403 (540)
T ss_pred CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC--------------C----------------
Confidence 3469999999999999999999999999999999999998732110000 0
Q ss_pred hHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEEEeccCCc
Q 001676 750 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829 (1033)
Q Consensus 750 ~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~s~~~ 829 (1033)
.
T Consensus 404 -------------------------------------------------------------------------------~ 404 (540)
T PRK13557 404 -------------------------------------------------------------------------------E 404 (540)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred cccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHHHHHHHHhhC
Q 001676 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 909 (1033)
Q Consensus 830 ~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~vl~~~L~~~ 909 (1033)
.... ......+++||||||++..+..+..+|+..
T Consensus 405 -----~~~~-----------------------------------------~~~~~~~~~iliv~~~~~~~~~l~~~l~~~ 438 (540)
T PRK13557 405 -----PKAR-----------------------------------------AIDRGGTETILIVDDRPDVAELARMILEDF 438 (540)
T ss_pred -----CCCc-----------------------------------------ccccCCCceEEEEcCcHHHHHHHHHHHHhc
Confidence 0000 000112468999999999999999999999
Q ss_pred CCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC-CCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEc
Q 001676 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMT 988 (1033)
Q Consensus 910 g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalT 988 (1033)
|+.+..+.++.+|++.+.....||+|++|..||+ ++|+++++.||+. .+.+|||++|
T Consensus 439 ~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~----------------------~~~~~ii~~~ 496 (540)
T PRK13557 439 GYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRR----------------------QPKIKVLLTT 496 (540)
T ss_pred CCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHh----------------------CCCCcEEEEc
Confidence 9999999999999998854346999999999997 9999999999973 2358999999
Q ss_pred cCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCCCC
Q 001676 989 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPIP 1029 (1033)
Q Consensus 989 a~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~~~ 1029 (1033)
..........++.+|+++|+.||++.++|...+.+......
T Consensus 497 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 537 (540)
T PRK13557 497 GYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGPT 537 (540)
T ss_pred CCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCCC
Confidence 99888888889999999999999999999999999876543
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=3.6e-36 Score=348.79 Aligned_cols=243 Identities=26% Similarity=0.383 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHH
Q 001676 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-------VTQQDYVRTAQASGKALV 486 (1033)
Q Consensus 414 ~~~~~~~~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~-------~~q~~~l~~i~~s~~~L~ 486 (1033)
.++.+....+.+.++++++..+++.+|++++||||||||++|.+++++|.+...+ +..+++++.+..+.++|.
T Consensus 128 ~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (380)
T PRK09303 128 LQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIE 207 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666777899999999999999999999999999754332 235778899999999999
Q ss_pred HHHHHHHHHHHhhcCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHh
Q 001676 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566 (1033)
Q Consensus 487 ~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiK 566 (1033)
.++++++++++.+.+...++..++|+.+++++++..+...+..+++.+.+++++..| .+.+|+.+|.||+.|||+||+|
T Consensus 208 ~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik 286 (380)
T PRK09303 208 RLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIK 286 (380)
T ss_pred HHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998877665 5889999999999999999999
Q ss_pred ccCC-CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcC
Q 001676 567 FTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645 (1033)
Q Consensus 567 fT~~-G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 645 (1033)
|++. |.|.+.+... +...+.|+|.|+|
T Consensus 287 ~~~~~~~I~i~~~~~----------------------------------------------------~~~~v~i~V~D~G 314 (380)
T PRK09303 287 YTPEGGTITLSMLHR----------------------------------------------------TTQKVQVSICDTG 314 (380)
T ss_pred cCCCCceEEEEEEec----------------------------------------------------CCCEEEEEEEEcC
Confidence 9976 4555544210 1124789999999
Q ss_pred CCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 646 ~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
+|||++.+++||+|||+.+. ++..+|+||||+|||++++.|||+|+++|.+++||+|+|++|..
T Consensus 315 ~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 315 PGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 99999999999999998765 34567999999999999999999999999999999999999974
No 14
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=356.33 Aligned_cols=225 Identities=24% Similarity=0.424 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEe
Q 001676 431 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE--LDV-TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507 (1033)
Q Consensus 431 e~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~--l~~-~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~ 507 (1033)
.+.++.++.|++++||||||||++|.|.++.|.... +++ ++.+.+..|.+.+++|.++|++|||++|+++|.+.++.
T Consensus 654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~ 733 (890)
T COG2205 654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKL 733 (890)
T ss_pred HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccc
Confidence 345678899999999999999999999999987643 444 47789999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCe-EEEEEEEeeccccc
Q 001676 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLVEEVVDS 586 (1033)
Q Consensus 508 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-I~v~v~~~~~~~~~ 586 (1033)
.+..+.+++.+++.........+. +.+.+++++| .+..|...|.|||.|||+||+||++.|. |.|.+...
T Consensus 734 ~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~------ 804 (890)
T COG2205 734 DWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE------ 804 (890)
T ss_pred chhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe------
Confidence 999999999999988776665554 5566677766 6889999999999999999999998875 77776532
Q ss_pred chhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCC
Q 001676 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666 (1033)
Q Consensus 587 i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s 666 (1033)
..+++|+|.|+|+|||++++++||++||+.++.
T Consensus 805 -----------------------------------------------~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~ 837 (890)
T COG2205 805 -----------------------------------------------RENVVFSVIDEGPGIPEGELERIFDKFYRGNKE 837 (890)
T ss_pred -----------------------------------------------cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC
Confidence 135789999999999999999999999998763
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCC
Q 001676 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (1033)
Q Consensus 667 ~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (1033)
.. ..|+|||||||+.||+.|||+|++.+.+++|++|+|++|....
T Consensus 838 ~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 838 SA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred CC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 33 6799999999999999999999999999999999999998643
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=326.67 Aligned_cols=221 Identities=26% Similarity=0.382 Sum_probs=189.8
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHH
Q 001676 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (1033)
Q Consensus 435 ~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~ 513 (1033)
+++.+|++++||||||||++|.|+++++.+... ++...++++.+..++++|..++++++++++++.+........+++.
T Consensus 202 ~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~ 281 (430)
T PRK11006 202 GARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVP 281 (430)
T ss_pred HHHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHH
Confidence 356689999999999999999999999876543 3456778999999999999999999999999998877767789999
Q ss_pred HHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEEeecccccchhhhh
Q 001676 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 514 ~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
.+++.+...+...+ .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 282 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------ 346 (430)
T PRK11006 282 MMLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------ 346 (430)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc------------
Confidence 99988877776555 67788888776553 578999999999999999999999764 565554311
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001676 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
...+.|+|+|+|+|||++.++++|+|||+.+.+.++..+
T Consensus 347 -----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 385 (430)
T PRK11006 347 -----------------------------------------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTG 385 (430)
T ss_pred -----------------------------------------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCC
Confidence 123679999999999999999999999998877777778
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
|+||||+|||++++.|||+|.++|.+++||+|+|++|..
T Consensus 386 G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 386 GSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 999999999999999999999999999999999999863
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=9.3e-32 Score=317.34 Aligned_cols=229 Identities=25% Similarity=0.374 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001676 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (1033)
Q Consensus 422 ~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg 501 (1033)
.++++.++.++..+.+.+|++++||||||||+.|.+.++++.+. +..+. +.+.+..++|..++++++.++|++.+
T Consensus 197 ~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~ 271 (433)
T PRK10604 197 AFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARLDRP 271 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455556666677788999999999999999999999988632 22222 23778889999999999999999999
Q ss_pred CceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEee
Q 001676 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 581 (1033)
Q Consensus 502 ~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~ 581 (1033)
...+..+++++.+++++++..+......+++++.+..+ +..+.+|+..+.+|+.||++||+||++ |.|.|++...+
T Consensus 272 ~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~ 347 (433)
T PRK10604 272 QNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG 347 (433)
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC
Confidence 99888899999999999999998888888777765322 335678999999999999999999985 77777764321
Q ss_pred cccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccc
Q 001676 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (1033)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (1033)
..+.|+|+|+|+|||++.+++||+|||
T Consensus 348 -----------------------------------------------------~~~~I~V~D~G~Gi~~e~~~~if~~f~ 374 (433)
T PRK10604 348 -----------------------------------------------------NQACLIVEDDGPGIPPEERERVFEPFV 374 (433)
T ss_pred -----------------------------------------------------CEEEEEEEEcCCCCCHHHHhhcCCCCc
Confidence 136799999999999999999999999
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 662 q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+.+.++++..+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 375 r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 375 RLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred cCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 998887777789999999999999999999999999999999999999754
No 17
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=1.1e-30 Score=312.02 Aligned_cols=222 Identities=20% Similarity=0.280 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeE
Q 001676 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508 (1033)
Q Consensus 429 ~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~ 508 (1033)
+.++..+...+|++++||||||||++|.+.++.|.+.... ...+....+.+...++..+++++++.++.+++...+..+
T Consensus 258 ~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~-~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~ 336 (485)
T PRK10815 258 NERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM-SVEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRE 336 (485)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Confidence 3344444556899999999999999999999988765421 223344567778889999999999999999998888888
Q ss_pred eecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccch
Q 001676 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588 (1033)
Q Consensus 509 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~ 588 (1033)
.+++..+++++++.+...+..+++++.+.+++.. .+.+|+..|.||+.||++||+||+.+ .|.|++...
T Consensus 337 ~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~-------- 405 (485)
T PRK10815 337 LHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT-------- 405 (485)
T ss_pred eecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe--------
Confidence 9999999999999999999999999998876543 57799999999999999999999965 355554321
Q ss_pred hhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC
Q 001676 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (1033)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s 668 (1033)
...+.|+|+|+|+|||++.++++|+||++.+.+
T Consensus 406 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~-- 438 (485)
T PRK10815 406 ---------------------------------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADTL-- 438 (485)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--
Confidence 124679999999999999999999999986532
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 669 ~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
.+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 439 --~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 439 --RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred --CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 35999999999999999999999999999999999999864
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.98 E-value=6.5e-31 Score=312.45 Aligned_cols=211 Identities=21% Similarity=0.341 Sum_probs=166.4
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHH
Q 001676 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELD---VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (1033)
Q Consensus 437 Ks~Fla~vSHELRTPLn~I~g~lelL~~~~l~---~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~ 513 (1033)
..++++.++|||||||++|.|+++++.+...+ ....+.+..+...+..++..++++++ ........++|+.
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~dl~ 349 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVNLN 349 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCcccccccccHH
Confidence 45678889999999999999999998765333 23334444444444444444444432 2334445789999
Q ss_pred HHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCe-----EEEEEEEeecccccch
Q 001676 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-----IFVTVYLVEEVVDSIE 588 (1033)
Q Consensus 514 ~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-----I~v~v~~~~~~~~~i~ 588 (1033)
.++++++..+...+..+++.+.+..++..| .+.+|+.+|+|||.||++||+||++.|. |.+.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--------- 419 (494)
T TIGR02938 350 QILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL--------- 419 (494)
T ss_pred HHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe---------
Confidence 999999999999999999999988877666 5789999999999999999999996652 3332211
Q ss_pred hhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC
Q 001676 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (1033)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s 668 (1033)
+...+.|+|+|||+|||++.+++||+||++.+..
T Consensus 420 --------------------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~-- 453 (494)
T TIGR02938 420 --------------------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG-- 453 (494)
T ss_pred --------------------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC--
Confidence 1124689999999999999999999999987543
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 669 ~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
..+||||||+|||.||++|||+|+++|.+++||+|+|++|+
T Consensus 454 -~~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 454 -SRKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred -CCCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 26799999999999999999999999999999999999985
No 19
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.98 E-value=3.9e-30 Score=305.51 Aligned_cols=236 Identities=25% Similarity=0.421 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001676 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 421 ~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
+.++++..+++...+.+.+|++.+|||+||||+.+.+.++.+.+.... ...+.+..+....++|..++++++++++.+.
T Consensus 224 ~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~-~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~ 302 (466)
T PRK10549 224 QDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK-FTPESVASLQAEVGTLTKLVDDLHQLSLSDE 302 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344555666667777788999999999999999999999998765322 2345678888899999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEE
Q 001676 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~ 579 (1033)
+...+...++++.+++++++..+......+++++.+++++.. .+.+|+.++.|++.||++||+||++. |.|.|.+..
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~ 380 (466)
T PRK10549 303 GALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ 380 (466)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 999999999999999999999999999999999998876543 46799999999999999999999965 566666532
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001676 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
. ...+.|+|+|+|+|||++.++++|+|
T Consensus 381 ~-----------------------------------------------------~~~~~i~V~D~G~Gi~~e~~~~lf~~ 407 (466)
T PRK10549 381 R-----------------------------------------------------DKTLRLTFADSAPGVSDEQLQKLFER 407 (466)
T ss_pred c-----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhccC
Confidence 1 12478999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
||+.+.+..+..+|+||||+||+++++.|||++.++|.+++||+|++.+|+..
T Consensus 408 ~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 408 FYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred cccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 99988776667789999999999999999999999999999999999999854
No 20
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=5.8e-30 Score=324.59 Aligned_cols=223 Identities=22% Similarity=0.356 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEe
Q 001676 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL--DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 509 (1033)
Q Consensus 432 ~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l--~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~ 509 (1033)
+.++.|.+|++.+||||||||++|.|+++++..... .....++++.+.....++..++++++++++++++...++..+
T Consensus 659 e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~ 738 (895)
T PRK10490 659 EREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEW 738 (895)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Confidence 345667899999999999999999999998764321 223346788899999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEEeecccccch
Q 001676 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 588 (1033)
Q Consensus 510 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~~~~~~~~i~ 588 (1033)
+++.+++++++..+......+++.+. +++..| .+.+|+.+|.||+.||++||+||++.| .|.|++...
T Consensus 739 ~~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~-------- 807 (895)
T PRK10490 739 LTLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE-------- 807 (895)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe--------
Confidence 99999999999999888777776654 455544 588999999999999999999999765 566655321
Q ss_pred hhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC
Q 001676 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (1033)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s 668 (1033)
...+.|+|+|+|+|||++.+++||+||++.+..
T Consensus 808 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~-- 840 (895)
T PRK10490 808 ---------------------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE-- 840 (895)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--
Confidence 124689999999999999999999999986542
Q ss_pred CCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 669 ~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 841 ~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 841 SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 34569999999999999999999999999999999999999853
No 21
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=3.2e-29 Score=287.80 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001676 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (1033)
Q Consensus 422 ~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg 501 (1033)
.+.++.++.+...+.+.+|++++||||||||++|.+.++++.+... . ..+.+....+++..++++++++++.+..
T Consensus 122 ~~n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~ 196 (356)
T PRK10755 122 ALNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQS 196 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3444455555556666789999999999999999999998765422 1 2334555677899999999999998876
Q ss_pred CceeEeEeecH-HHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEE
Q 001676 502 KLELEAVSFNL-RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579 (1033)
Q Consensus 502 ~l~l~~~~~dL-~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~ 579 (1033)
.......++++ .+++..++..+...+..+++.+.+...+ .+..+.+|+..+++|+.||++||+||++. |.|.|++..
T Consensus 197 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~ 275 (356)
T PRK10755 197 FSSGHYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQ 275 (356)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 66666667888 9999999888988888898888774222 34568899999999999999999999965 456665532
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001676 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
. ...+.|+|+|+|+||+++.++++|+|
T Consensus 276 ~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~ 302 (356)
T PRK10755 276 E-----------------------------------------------------DGGAVLAVEDEGPGIDESKCGELSKA 302 (356)
T ss_pred c-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHhCCC
Confidence 1 12368999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEEeC
Q 001676 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 711 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g-~GStF~~~lp~~ 711 (1033)
|++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++++|..
T Consensus 303 f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 303 FVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred eEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 998643 346999999999999999999999999998 999999999863
No 22
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=3.6e-29 Score=297.26 Aligned_cols=213 Identities=26% Similarity=0.437 Sum_probs=182.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~-l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
+..+|.+++|||+||||++|.|+++++.+.. .+.+.+++++.+....+++..++++++++++.. ..+..++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 4567999999999999999999999987643 334567788899999999999999999999843 34556899999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeecccccchhhhhh
Q 001676 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
++++++..+...+.++++.+.+..++..+ .+.+|+.+|.|++.||++||+||+. .|.|.|++...+
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~------------ 378 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESG------------ 378 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeC------------
Confidence 99999999999999999999998876554 5778999999999999999999975 456666653211
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001676 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
..+.|+|+|+|+|||++.++++|+||++.+ .+|
T Consensus 379 -----------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k------~~g 411 (457)
T PRK10364 379 -----------------------------------------AGVKISVTDSGKGIAADQLEAIFTPYFTTK------AEG 411 (457)
T ss_pred -----------------------------------------CeEEEEEEECCCCCCHHHHHHHhCccccCC------CCC
Confidence 137899999999999999999999998532 368
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+||||+|||++++.|||+|+++|.+++||+|++++|...
T Consensus 412 ~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 412 TGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred CcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 999999999999999999999999999999999999853
No 23
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=8.5e-29 Score=295.20 Aligned_cols=232 Identities=26% Similarity=0.425 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001676 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 422 ~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
.++++.++.++....+.+|++.+|||||||++.|.+.++.+..... ..+..+.+..+.....++..++++++++++.+.
T Consensus 247 ~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~ 326 (482)
T PRK09835 247 SFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADN 326 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556666666778899999999999999999999998765433 234456677778888999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEE
Q 001676 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 579 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~ 579 (1033)
+.......++++.++++++...+...+..+++.+.+..+ +..+.+|+.+|+||+.||++||+||++.| .|.|++..
T Consensus 327 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~ 403 (482)
T PRK09835 327 NQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQE 403 (482)
T ss_pred CCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 988888889999999999999999988899988876532 34688999999999999999999999765 46666532
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001676 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
.+ ..+.|+|+|+|+|||++.++++|+|
T Consensus 404 ~~-----------------------------------------------------~~~~i~v~d~G~gi~~~~~~~if~~ 430 (482)
T PRK09835 404 VD-----------------------------------------------------HQVQLVVENPGTPIAPEHLPRLFDR 430 (482)
T ss_pred eC-----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCC
Confidence 11 1367999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
||+.+.++++..+|+||||+||+++++.|||+|+++|.+ .|++|++++|.
T Consensus 431 f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 431 FYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred cccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 999987766666899999999999999999999999975 69999999985
No 24
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=7.9e-29 Score=307.46 Aligned_cols=231 Identities=19% Similarity=0.315 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001676 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (1033)
Q Consensus 423 ~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~ 502 (1033)
++++..++++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+..+.++|..++++++++++++.+.
T Consensus 471 fn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~ 550 (703)
T TIGR03785 471 FAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAI 550 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 33444556666666778999999999999999999999988777777788899999999999999999999999999988
Q ss_pred ceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEee
Q 001676 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVE 581 (1033)
Q Consensus 503 l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~ 581 (1033)
...+.+++|+.+++++++..+......+++.+.+..+ +..+.+|+..|.||+.||++||+||++. |.|.|++...
T Consensus 551 ~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~~---~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~- 626 (703)
T TIGR03785 551 QSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPET---PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN- 626 (703)
T ss_pred ccccceeecHHHHHHHHHHHHHHHhhcCCEEEEecCC---CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc-
Confidence 8888899999999999999999888888877765432 3368899999999999999999999965 4555554321
Q ss_pred cccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccc
Q 001676 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (1033)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (1033)
...+.|+|+|+|+|||++.+++||+||+
T Consensus 627 ----------------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~ 654 (703)
T TIGR03785 627 ----------------------------------------------------KSHALLTVSNEGPPLPEDMGEQLFDSMV 654 (703)
T ss_pred ----------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCe
Confidence 1246899999999999999999999999
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEE
Q 001676 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 709 (1033)
Q Consensus 662 q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g-~GStF~~~lp 709 (1033)
+.+...+...+|+||||+|||++++.|||+|.++|.++ .|++|++++|
T Consensus 655 t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 655 SVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred ecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 87655555556899999999999999999999999975 8999999987
No 25
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=7.2e-29 Score=293.21 Aligned_cols=230 Identities=29% Similarity=0.447 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001676 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 422 ~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
.+.++.+++++......+|.+.+||||||||+.+.+.++.+.....+ .+..++++.+.....++..++++++++++++.
T Consensus 226 ~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 305 (457)
T TIGR01386 226 SFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADN 305 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555666666667899999999999999999999987654333 34467788888888999999999999999999
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEE
Q 001676 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~ 579 (1033)
.....+..++++.++++++++.+...+.++++++.+.. . ..+.+|+..|.+++.||++||+||++. |.|.|++..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~ 381 (457)
T TIGR01386 306 GQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIER 381 (457)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEe
Confidence 98888889999999999999999988899998876643 2 468899999999999999999999965 567666532
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001676 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
. ...+.|+|+|+|+|||++.++++|+|
T Consensus 382 ~-----------------------------------------------------~~~~~i~v~D~G~g~~~~~~~~~~~~ 408 (457)
T TIGR01386 382 R-----------------------------------------------------SDEVRVSVSNPGPGIPPEHLSRLFDR 408 (457)
T ss_pred c-----------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhccc
Confidence 1 12468999999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 001676 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp 709 (1033)
||+.+.++++..+|+||||+||+++++.|||+|.+++ +++|++|++++|
T Consensus 409 ~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 409 FYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred cccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 9999887766778999999999999999999999999 999999999987
No 26
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.97 E-value=2e-28 Score=290.11 Aligned_cols=231 Identities=23% Similarity=0.386 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001676 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (1033)
Q Consensus 422 ~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg 501 (1033)
.++...+++++....+.+|++++||||||||++|.+.++++.....+. ..+..+....++|..++++++++++.+..
T Consensus 228 ~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~ 304 (461)
T PRK09470 228 SFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQK 304 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555566666777788999999999999999999999876543322 24667888999999999999999998765
Q ss_pred CceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEee
Q 001676 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 581 (1033)
Q Consensus 502 ~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~ 581 (1033)
. .+..+.+++.+++++++..+...+..+++.+.+...+. +..+.+|+..|.+++.||++||+||++ +.|.|+++..+
T Consensus 305 ~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~~ 381 (461)
T PRK09470 305 N-HLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVDK 381 (461)
T ss_pred c-ccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEEC
Confidence 4 56777899999999999998888888899888874332 457889999999999999999999996 55666654211
Q ss_pred cccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccc
Q 001676 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (1033)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (1033)
..+.|+|+|+|+||+++.++++|+|||
T Consensus 382 -----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~ 408 (461)
T PRK09470 382 -----------------------------------------------------DGLTITVDDDGPGVPEEEREQIFRPFY 408 (461)
T ss_pred -----------------------------------------------------CEEEEEEEECCCCCCHHHHHHhcCCCc
Confidence 136799999999999999999999999
Q ss_pred ccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 662 q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
+.+...++..+|+||||+||+++++.|||++.+.|.++.||+|++++|+.
T Consensus 409 ~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 409 RVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLY 458 (461)
T ss_pred cCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCC
Confidence 98877777778999999999999999999999999999999999999975
No 27
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-29 Score=287.75 Aligned_cols=236 Identities=25% Similarity=0.401 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001676 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQA 496 (1033)
Q Consensus 420 ~~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~---~l~~~q~~~l~~i~~s~~~L~~LIndlLd~s 496 (1033)
..++.+++.++|+++....+|...+||++|.||+.|.+++++|... .++.+.++++..+.+....+.+||++++.++
T Consensus 507 aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s 586 (750)
T COG4251 507 AEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYS 586 (750)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456677788889999999999999999999999999999999754 5788899999999999999999999999999
Q ss_pred HhhcCCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEE
Q 001676 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 576 (1033)
Q Consensus 497 kiesg~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~ 576 (1033)
++..-...+. +.|+.+++++++........+.++++.+. + +| .+.+|+.++.|++.||+.|||||..++.-.|.
T Consensus 587 ~l~~~~~~l~--~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~ 660 (750)
T COG4251 587 KLGLTEAPLQ--PTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIE 660 (750)
T ss_pred hhccccCCCC--CcchHHHHHHHHHhcccccccccceEEec--c-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceE
Confidence 9976655554 78999999999999999999999988763 3 66 58899999999999999999999865532222
Q ss_pred EEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhc
Q 001676 577 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656 (1033)
Q Consensus 577 v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~I 656 (1033)
|.... ....+.++|.|+|+||+++..++|
T Consensus 661 I~~~r---------------------------------------------------~ed~~t~sV~dng~Gi~~a~~~ri 689 (750)
T COG4251 661 ISAER---------------------------------------------------QEDEWTFSVRDNGIGIDPAYFERI 689 (750)
T ss_pred Eeeec---------------------------------------------------cCCceEEEecCCCCCcCHHHHHHH
Confidence 22110 112367999999999999999999
Q ss_pred cCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCCCC
Q 001676 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (1033)
Q Consensus 657 FepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~~~ 714 (1033)
|..|.+..+ ...+.|||+||+|||+|++.|+|.|+|+|.+|.|+||.|++|....+
T Consensus 690 F~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 690 FVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred HHHHHhcCc--hhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 999988643 34678999999999999999999999999999999999999987644
No 28
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-26 Score=262.56 Aligned_cols=211 Identities=23% Similarity=0.420 Sum_probs=182.1
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001676 438 SQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 438 s~Fla~vSHELRTPLn~I~g~le---lL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
.++.+.+||||+.||++|.++++ .|.+....++-.+.++.|..-.++|-.+..+|-.|++--... ..++.+.+
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~~ 460 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLRE 460 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHHH
Confidence 47899999999999999999986 466777777888899999999999999999999999865544 45789999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC---CCeEEEEEEEeecccccchhhh
Q 001676 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVET 591 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~i~i~~ 591 (1033)
.|++++.++....+..+..+....++ .|..|.+|+.||+|||.|||+||+..+. ++.|.|.+..
T Consensus 461 ai~~Al~ll~~R~~~~~~~l~~~~~~-~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------------ 527 (603)
T COG4191 461 AIEGALELLRGRLRAAGVELELDLPD-APLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------------ 527 (603)
T ss_pred HHHHHHHHHHHhhhccCceeeccCCC-CCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------------
Confidence 99999999999999999999887655 3568999999999999999999999974 3555554421
Q ss_pred hhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCC
Q 001676 592 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671 (1033)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~ 671 (1033)
+...+.|+|.|||+||++|.+.++|+||++.++ ..
T Consensus 528 -----------------------------------------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~----~~ 562 (603)
T COG4191 528 -----------------------------------------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP----VG 562 (603)
T ss_pred -----------------------------------------cCCeEEEEEccCCCCCCHHHHHhhcCCccccCc----cc
Confidence 122478999999999999999999999997542 35
Q ss_pred CcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 672 ~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
.|.||||+||+.|++-|||+|.+.+.++.|+.|+++|+.
T Consensus 563 ~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 563 KGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred CCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 699999999999999999999999999999999999974
No 29
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=4.1e-29 Score=264.51 Aligned_cols=222 Identities=23% Similarity=0.391 Sum_probs=183.6
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001676 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 435 ~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
++-+.+.++++|||||||.||.|.+++|.....++..++|.+.|-+.+++|.+|++.+.-++- .-..+..++|+++
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 355678999999999999999999999988777777899999999999999999999866543 3344556899999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC---C--CeEEEEEEEeecccccchh
Q 001676 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---K--GHIFVTVYLVEEVVDSIEV 589 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~---~--G~I~v~v~~~~~~~~~i~i 589 (1033)
+++.|..+.+..+ ..++.+.-++++.+|. +.+|+++|.|++.||+.||...-. . |.|.++-+..-.. .+
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~----~i 279 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL----TI 279 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE----Ec
Confidence 9999999887665 4578999999999996 789999999999999999999875 3 7777664321110 00
Q ss_pred hhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCC
Q 001676 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (1033)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~ 669 (1033)
........+.++|.|||+|||++.++++|.||...
T Consensus 280 ---------------------------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~------ 314 (363)
T COG3852 280 ---------------------------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG------ 314 (363)
T ss_pred ---------------------------------------cCceeEeeeeeEEecCCCCCChHHhhhcccccccc------
Confidence 00112234678999999999999999999999853
Q ss_pred CCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 670 ~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+.+||||||+|+++++..|||.|.|+|.||. |+|++.+|..+
T Consensus 315 r~~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~~ 356 (363)
T COG3852 315 REGGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIRK 356 (363)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEEeccCCc-eEEEEEeeccc
Confidence 4579999999999999999999999999985 99999999865
No 30
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.97 E-value=4e-28 Score=285.90 Aligned_cols=222 Identities=20% Similarity=0.304 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001676 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 421 ~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
+.++++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....++|..++++++++++.+.
T Consensus 213 ~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~ 287 (435)
T PRK09467 213 RAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQ 287 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445566667777888899999999999999999999998877532 233456778889999999999999998765
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe
Q 001676 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~ 580 (1033)
. ....++++.+++++++.... ..+..+.+.+++. +..+.+|+..|++|+.||++||+||+ .|.|.|++...
T Consensus 288 ~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~ 358 (435)
T PRK09467 288 E---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE 358 (435)
T ss_pred C---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec
Confidence 3 34567899999999987654 3444555555443 34788999999999999999999998 57777765321
Q ss_pred ecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcc
Q 001676 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (1033)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (1033)
...+.|+|+|+|+||+++.++++|+||
T Consensus 359 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f 385 (435)
T PRK09467 359 -----------------------------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPF 385 (435)
T ss_pred -----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCc
Confidence 124689999999999999999999999
Q ss_pred cccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 661 ~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
++.+.+. ..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 386 ~~~~~~~--~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 386 TRGDSAR--GSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred ccCCCCC--CCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 9977543 347999999999999999999999999999999999999974
No 31
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=6.1e-28 Score=285.67 Aligned_cols=226 Identities=20% Similarity=0.315 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001676 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 422 ~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~-~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
.++.+..+.++......+|++.+|||||||++.+.+.++.+.....++ ...++++.+...++++..+++++++++|++.
T Consensus 222 ~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~ 301 (449)
T PRK10337 222 ALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDS 301 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344445555555556678999999999999999999998776544333 3457889999999999999999999999998
Q ss_pred CCceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC-eEEEEEEE
Q 001676 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 579 (1033)
Q Consensus 501 g~l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G-~I~v~v~~ 579 (1033)
+.......++++.+++++++..+...+..+++++.+..++. +..+.+|+..+.+++.||++||+||++.| .|.+++..
T Consensus 302 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~ 380 (449)
T PRK10337 302 LDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA 380 (449)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe
Confidence 87666778899999999999999988999999999887643 34568999999999999999999999764 55544310
Q ss_pred eecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCc
Q 001676 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (1033)
Q Consensus 580 ~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (1033)
..++|+|+|+|||++.++++|+|
T Consensus 381 ---------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~~ 403 (449)
T PRK10337 381 ---------------------------------------------------------RNFTVRDNGPGVTPEALARIGER 403 (449)
T ss_pred ---------------------------------------------------------eEEEEEECCCCCCHHHHHHhccc
Confidence 14899999999999999999999
Q ss_pred ccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001676 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (1033)
Q Consensus 660 F~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~l 708 (1033)
||+.+. +..+|+||||+||++++++|||+|.++|.+++|++|++++
T Consensus 404 f~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 404 FYRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred ccCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 998543 2346999999999999999999999999999999999863
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=2.4e-28 Score=275.14 Aligned_cols=218 Identities=32% Similarity=0.427 Sum_probs=190.1
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~--~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~ 513 (1033)
.+.+|++.++|||||||++|.++++++... ..++...++++.+...++++..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345799999999999999999999988654 344566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhh
Q 001676 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 514 ~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
++++.++..+......+++.+.+.++. +..+.+|+..|.+|+.||++||+||++. +.|.|++...
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------ 258 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------ 258 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc------------
Confidence 999999999999999999999988732 3468899999999999999999999864 5555554311
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001676 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
...+.|.|.|+|+|||++.++++|+||++.+...+...+
T Consensus 259 -----------------------------------------~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~ 297 (333)
T TIGR02966 259 -----------------------------------------GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTG 297 (333)
T ss_pred -----------------------------------------CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCC
Confidence 113679999999999999999999999987766566678
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001676 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~l 708 (1033)
|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 298 g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 298 GTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred CCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 999999999999999999999999999999999974
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=8.9e-27 Score=276.53 Aligned_cols=218 Identities=25% Similarity=0.394 Sum_probs=191.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
...+|++.++||+|||++.+.+.++++.+....+...++++.+...++++..++++++.+++++.........++++.++
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 34578999999999999999999999887555566788999999999999999999999999999888777889999999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhhhc
Q 001676 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
++++...+...+..+++.+.+.++ +..+.+|...|.+++.||+.||+||+.+ |.|.|++...
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~-------------- 397 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD-------------- 397 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--------------
Confidence 999999999999999999988765 4468899999999999999999999954 6777766421
Q ss_pred cccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcc
Q 001676 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~Gt 674 (1033)
...+.|+|+|+|+|||++.++++|+||++.+.. ....+|+
T Consensus 398 ---------------------------------------~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~ 437 (475)
T PRK11100 398 ---------------------------------------GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKST 437 (475)
T ss_pred ---------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCc
Confidence 124689999999999999999999999976432 2345799
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 675 GLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
||||+||+++++.|||+|.++|.++.||+|.+++|.
T Consensus 438 GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~ 473 (475)
T PRK11100 438 GLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473 (475)
T ss_pred chhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeC
Confidence 999999999999999999999999999999999986
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=3.1e-27 Score=270.02 Aligned_cols=217 Identities=24% Similarity=0.434 Sum_probs=173.7
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
+..+|++.+||||||||++|.|+++++.+...++..+++++.+..+++++..++++++++.+... ..+.++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 45789999999999999999999999887666667789999999999999999999998765432 245799999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhcc--CCCeEEEEEEEeecccccchhhhhh
Q 001676 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT--EKGHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT--~~G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.|.|.|.+.......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888777554 467888877766555 478999999999999999999997 3455555442110000
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001676 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
.........+.++|.|+|+|||++.++++|+||++. +.+|
T Consensus 272 ----------------------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g 311 (348)
T PRK11073 272 ----------------------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGG 311 (348)
T ss_pred ----------------------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCC
Confidence 000011123579999999999999999999999863 2469
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
+||||+|||++++.|||+|+++|.+++ |+|++++|+
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 999999999999999999999999885 999999986
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.95 E-value=1e-25 Score=251.17 Aligned_cols=217 Identities=39% Similarity=0.666 Sum_probs=184.1
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ceeEeEeecHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK-LELEAVSFNLRA 514 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~-l~l~~~~~dL~~ 514 (1033)
.+..|++.++||+|||++.+.+.++++.....+ .+.+++..+...++++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478899999999999999999998865544222 267888888899999999999999999998873 344466778999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhc
Q 001676 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
++++++..+...+..+++.+....+ .+..+.+|+.++.||+.||++||+||++.|.|.|.+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999999888888888886554 2346889999999999999999999998777777664211
Q ss_pred cccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcc
Q 001676 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~Gt 674 (1033)
..+.++|.|+|+||+++.++++|+||++.+...+ |+
T Consensus 258 ----------------------------------------~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~ 293 (336)
T COG0642 258 ----------------------------------------EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GT 293 (336)
T ss_pred ----------------------------------------CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CC
Confidence 0578999999999999999999999998765322 99
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 675 GLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
||||+|||++++.|||+|.++|.++.||+|++++|...
T Consensus 294 GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 294 GLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999999999999999854
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.95 E-value=8.4e-26 Score=275.20 Aligned_cols=214 Identities=26% Similarity=0.487 Sum_probs=184.7
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
+..+|++.++|||||||+.|.++++++.....+....++++.+...++++..++++++++++.+... ..++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHH
Confidence 4568999999999999999999999987765566778999999999999999999999999876433 457999999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeecccccchhhhhhc
Q 001676 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
++++...+......+++++.+.+++..+ .+.+|+..|.|++.||+.||+||+. .|.|.|++...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~------------- 530 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS------------- 530 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC-------------
Confidence 9999999998878899999988876655 4778999999999999999999975 466666653211
Q ss_pred cccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcc
Q 001676 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~Gt 674 (1033)
...+.|+|+|+|+|||++.++++|+||++.+ .+|+
T Consensus 531 ---------------------------------------~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~ 565 (607)
T PRK11360 531 ---------------------------------------DGQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGT 565 (607)
T ss_pred ---------------------------------------CCEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCC
Confidence 0127899999999999999999999999643 3589
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 675 GLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
||||++|++++++|||+|+++|.+|+||+|++++|+..
T Consensus 566 glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 566 GLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred chhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999854
No 37
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.93 E-value=2.6e-24 Score=267.74 Aligned_cols=203 Identities=21% Similarity=0.322 Sum_probs=163.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
+.+++.+.++||||||++.+..+++...+...+ +.++++++.+.++.+++.++++++.+.. ...+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHH
Confidence 346788999999999999999888876654433 3456788889999999998887764332 245567899999
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeecccccchhhhhh
Q 001676 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~-~G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
+++++.+.+... ...+++. ++++ ..+.+|+.++.||+.||++||+||++ +|.|.|++...+
T Consensus 548 ll~~~~~~~~~~--~~~~~l~--~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~------------ 609 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEVS--IDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVEREC------------ 609 (679)
T ss_pred HHHHHHHHhhhh--cCCceEE--eCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcC------------
Confidence 999998876543 2334443 3333 46889999999999999999999996 467777664211
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhh-HhhccCcccccCCCCCCCCC
Q 001676 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA-QSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-~~~IFepF~q~d~s~s~~~~ 672 (1033)
..+.|+|+|+|+|||++. ++++|+||++.+ .+
T Consensus 610 -----------------------------------------~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~ 642 (679)
T TIGR02916 610 -----------------------------------------GAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GA 642 (679)
T ss_pred -----------------------------------------CEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CC
Confidence 246899999999999999 999999998643 26
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 001676 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp 709 (1033)
|+||||+|||++++.|||+|.++|.+|+||+|++++|
T Consensus 643 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 643 GMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9999999999999999999999999999999999986
No 38
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.93 E-value=3e-25 Score=233.17 Aligned_cols=186 Identities=30% Similarity=0.450 Sum_probs=138.4
Q ss_pred CCCCCHHHHHHHHHH--hhhhCCCceeeeeeeccCcchHHHHHHHhCceeeeecccccCCCCCCCCCCCCcceeeeEe--
Q 001676 157 PSAIDQMTFTRYTER--TAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIF-- 232 (1033)
Q Consensus 157 ~~~id~~~f~~~t~~--~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~-- 232 (1033)
++.|++++|..|++. ++.++|++.+++|+|+|.+++|++||+++........ ...|.+.+++|+||.|
T Consensus 2 s~~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~~~~~~~f--------~i~~~~~~~~~~pv~yi~ 73 (193)
T PF03924_consen 2 SEEVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLRAEGFPDF--------RIRPDGPRDEYFPVTYIE 73 (193)
T ss_dssp S----HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT------S----------BTTS--SEE-BEEEE-
T ss_pred CCccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHhhhcccce--------EeeeCCCCCCceEEEEee
Confidence 477999999999999 9999999999999999999999999998753322211 1124558999999977
Q ss_pred eeCCCceEEeeccCCCcccHHHHHHHHHcCCceeecceeecccC--CceEEEEEeeeccCCCCCCChhHHHHhhcceeee
Q 001676 233 AQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN--RLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310 (1033)
Q Consensus 233 ~~~~~~~~~g~D~~s~~~~~~~i~~Ar~tg~~~~t~p~~l~~~~--~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~ 310 (1033)
|.+.+..++|+|++|+|.||++|.+|++||++++|+|++|++.+ +.|++++.|||..+.++..++++|...++||+.+
T Consensus 74 P~~~n~~~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~ 153 (193)
T PF03924_consen 74 PLEGNEAALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSA 153 (193)
T ss_dssp GGG--GGGBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEE
T ss_pred cchhHHhccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEE
Confidence 45667889999999999999999999999999999999999865 6999999999977666777899999999999999
Q ss_pred eeeHHHHHHHHHHhhhccccEEEEeeccCCCCCceecccc
Q 001676 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS 350 (1033)
Q Consensus 311 ~~~v~~l~~~~l~~~~~~~~i~v~~~d~~~~~~~~~~y~~ 350 (1033)
+|++++|++.++........+.+.+||.+....+..+|++
T Consensus 154 v~~~~~l~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 154 VFRVDDLFESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp EEEHHHHHHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred EEEHHHHHHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 9999999999987765446899999998777777777763
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-24 Score=274.12 Aligned_cols=210 Identities=17% Similarity=0.176 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001676 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (1033)
Q Consensus 423 ~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~ 502 (1033)
.+++.++++++.++|++|+++|||||||||++|.|+++++.+...++....++..+......+..+.+.++..
T Consensus 591 rK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 663 (807)
T PRK13560 591 RKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 3344456667778899999999999999999999999998877667777777766666666665555544322
Q ss_pred ceeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC----CeEEEEEE
Q 001676 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK----GHIFVTVY 578 (1033)
Q Consensus 503 l~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~ 578 (1033)
....++++.++++++...+......+...+.+.++...+.....+...+.|||.||++||+||+.. |.|.|++.
T Consensus 664 --~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~ 741 (807)
T PRK13560 664 --EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIR 741 (807)
T ss_pred --ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEE
Confidence 233568999999999998887776666666666554444334456778899999999999999843 45555542
Q ss_pred EeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccC
Q 001676 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658 (1033)
Q Consensus 579 ~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe 658 (1033)
.. +...+.|+|+|||+|||++..
T Consensus 742 ~~----------------------------------------------------~~~~v~i~V~D~G~GI~~~~~----- 764 (807)
T PRK13560 742 EQ----------------------------------------------------GDGMVNLCVADDGIGLPAGFD----- 764 (807)
T ss_pred Ec----------------------------------------------------CCCEEEEEEEeCCCcCCcccc-----
Confidence 10 112478999999999998731
Q ss_pred cccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 659 pF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
...|+||||+|||+||++|||+|+|+|. +||+|+|++|+.
T Consensus 765 -----------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~ 804 (807)
T PRK13560 765 -----------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMS 804 (807)
T ss_pred -----------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCC
Confidence 1247889999999999999999999994 799999999974
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.90 E-value=1.3e-22 Score=245.57 Aligned_cols=195 Identities=22% Similarity=0.319 Sum_probs=136.9
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHH
Q 001676 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 516 (1033)
Q Consensus 437 Ks~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll 516 (1033)
..++++.+|||+||||++|.|++++... .+..+++..+ ++.....++++++..+ . .++
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~--~-------------~~~ 396 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK--S-------------PVI 396 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc--C-------------HHH
Confidence 3456788999999999999999986432 1223343322 2222222333332211 0 112
Q ss_pred HHHHHHHHhhhhccCcEEEEEeCCCCCceE-EecHHHHHHHHHHHHHHHHhccC---CCeEEEEEEEeecccccchhhhh
Q 001676 517 DDVLSLFSGKSQDKGVELAVYISDRVPETL-IGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 517 ~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v-~gD~~rL~QIL~NLl~NAiKfT~---~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
...+......+..+++.+.+..++.+|... ..+...|.||+.||++||+||+. .|.|.|++...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------ 464 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------ 464 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc------------
Confidence 222222334567788988887766555322 22446899999999999999963 45666654321
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001676 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
...+.|+|+|+|+|||++.++++|+||++. +.+
T Consensus 465 -----------------------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~ 497 (542)
T PRK11086 465 -----------------------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGS 497 (542)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCC
Confidence 124689999999999999999999999853 246
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
|+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 498 g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 498 NRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred CCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999854
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.90 E-value=1.6e-21 Score=233.39 Aligned_cols=195 Identities=11% Similarity=0.187 Sum_probs=153.1
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecH
Q 001676 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (1033)
Q Consensus 434 ~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL 512 (1033)
++.+.++.+.++||+||||++|.+.++++.+...+ ++.++..+.+.+.+.++.+.++++++..+-. ...++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~------~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPR------QLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCc------ccccCCH
Confidence 34567888999999999999999999988664433 3455778889999999999999998765421 2346899
Q ss_pred HHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhh
Q 001676 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 513 ~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.|++...
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 9999999988876554444444443332 22345678889999999999999999988877766421
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001676 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
...+.++|+|+|+|||++. .
T Consensus 439 -----------------------------------------~~~i~l~V~DnG~Gi~~~~-------------------~ 458 (495)
T PRK11644 439 -----------------------------------------DERLMLVIEDDGSGLPPGS-------------------G 458 (495)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCcCC-------------------C
Confidence 1247899999999999652 3
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
|+|+||+|||++++.|||+|+++| ++||+|++++|.
T Consensus 459 ~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 459 QQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 679999999999999999999999 889999999984
No 42
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.89 E-value=5.1e-22 Score=226.82 Aligned_cols=211 Identities=22% Similarity=0.336 Sum_probs=167.1
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEe
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDV---TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 509 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~---~l~~---~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~ 509 (1033)
|..+-..-++|||||||+-|...+|-|... ..++ .-+++.++|.+....+.++|++.-+|+|+-.- +.++
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p----~~e~ 560 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAP----KLEK 560 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCCc
Confidence 444555569999999999999999977532 2222 23578899999999999999999999997554 3457
Q ss_pred ecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCC---eE---EEEEEEeecc
Q 001676 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG---HI---FVTVYLVEEV 583 (1033)
Q Consensus 510 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G---~I---~v~v~~~~~~ 583 (1033)
.||++++++++.++.. ....+.+..+...+ |....+|+..|.|++.||+.||..+-+.- +. .++++.
T Consensus 561 ~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~---- 633 (712)
T COG5000 561 SDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL---- 633 (712)
T ss_pred chHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE----
Confidence 8999999999988754 34678888887766 77888899999999999999999986421 00 111111
Q ss_pred cccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCccccc
Q 001676 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (1033)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (1033)
......+++.|.|||.|.|.|.+.|+||||++.
T Consensus 634 -----------------------------------------------~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTt 666 (712)
T COG5000 634 -----------------------------------------------DDADGRIVVDVIDNGKGFPRENRHRALEPYVTT 666 (712)
T ss_pred -----------------------------------------------ecCCCeEEEEEecCCCCCChHHhhhhccCceec
Confidence 011234789999999999999999999999864
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC-CCceEEEEEEEe
Q 001676 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP-NIGSTFTFTAVF 710 (1033)
Q Consensus 664 d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~-g~GStF~~~lp~ 710 (1033)
. ..||||||+|||+|+|-|||.|.+...| -.|....+.+|.
T Consensus 667 r------~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 667 R------EKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred c------cccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 2 3699999999999999999999999884 359999998886
No 43
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.89 E-value=1.5e-21 Score=237.08 Aligned_cols=198 Identities=21% Similarity=0.312 Sum_probs=144.1
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHH
Q 001676 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518 (1033)
Q Consensus 439 ~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~ 518 (1033)
+.+..++||+++||++|.|++++- ...+.++.+...+..+..+++++....+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 356678999999999999988752 1234566777777778887777766432 1122222
Q ss_pred HHHHHHhhhhccCcEEEEEeCCCCC-ceEEecHHHHHHHHHHHHHHHHhcc---CCCeEEEEEEEeecccccchhhhhhc
Q 001676 519 VLSLFSGKSQDKGVELAVYISDRVP-ETLIGDPGRFRQIITNLMGNSIKFT---EKGHIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 519 v~~~~~~~a~~k~i~l~~~i~~~~p-~~v~gD~~rL~QIL~NLl~NAiKfT---~~G~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
+.. ....+.++++.+.+..+.... .....|+..|.||+.||++||+||. +.|...|.+....
T Consensus 399 l~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------- 464 (545)
T PRK15053 399 LFG-KVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------- 464 (545)
T ss_pred HHH-HHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE-------------
Confidence 222 234566788888765443321 1235699999999999999999994 3333333332211
Q ss_pred cccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcc
Q 001676 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~Gt 674 (1033)
+...+.|+|+|+|+|||++.+++||+|||+.+ ++..+|+
T Consensus 465 --------------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~ 503 (545)
T PRK15053 465 --------------------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEH 503 (545)
T ss_pred --------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCc
Confidence 11246899999999999999999999999743 3345689
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 675 GLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 504 GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 504 GIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred eeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 99999999999999999999999999999999999753
No 44
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.86 E-value=3.9e-20 Score=197.81 Aligned_cols=228 Identities=16% Similarity=0.148 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHH
Q 001676 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQM 163 (1033)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~ 163 (1033)
|+++.-++.+++++++++.++-......++.-|-.|...+|.++.+|+++++...+.+.+-.+||.++ ...|++.
T Consensus 10 ~~~~~pl~~~i~~LLltl~~~g~a~~~t~~~sr~~fe~~A~~~~nal~~rv~~~~~~l~st~a~f~s~-----~~~it~~ 84 (348)
T COG3614 10 VRVWVPLLVLIVSLLLTLTAAGLAYSLTLEQSRTLFERLADRQTNALQQRVDLDQHLLRSTRAFFRSS-----TSDITRR 84 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCcHH
Confidence 33444444477777888777777778888888889999999999999999999999999999999885 7789999
Q ss_pred HHHHHHHHhhhhCCCceeeeeeeccCcchHHHHHHHhCceeee-ecccccCCCCCCCC-CCCCcceeeeEeee--CC-Cc
Q 001676 164 TFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR-MDTFEHNPVHKDEP-SPIEEEYAPVIFAQ--DT-VS 238 (1033)
Q Consensus 164 ~f~~~t~~~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~~-~~~~~~~~~~~~~~-~~~~~~Y~pvi~~~--~~-~~ 238 (1033)
+|..|+. ++...-.+.|+.|.+.|...+++.||..+-..+.. ......+..++..| ...+++|+||-|.+ .. |.
T Consensus 85 ~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl~~~N~ 163 (348)
T COG3614 85 EFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPLNYDNR 163 (348)
T ss_pred HHHHhhh-hhcccccchhhhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCCCccch
Confidence 9999999 77777889999999999999999999754222211 11111122333456 77788999996654 44 77
Q ss_pred eEEeeccCCCcccHHHHHHHHHcCCceeecceeeccc-----CCceEEEEEeeeccCCCCCCChhHHHHhhcceeeeeee
Q 001676 239 HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKT-----NRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFD 313 (1033)
Q Consensus 239 ~~~g~D~~s~~~~~~~i~~Ar~tg~~~~t~p~~l~~~-----~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~ 313 (1033)
.++||||.|+|.||+|+..|++++++.+|+|++|+|. ...|++++.|||+...++...+. .....||++..+.
T Consensus 164 ~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~g--q~~l~Gfl~~~~~ 241 (348)
T COG3614 164 KALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPG--QAVLVGFLYLATR 241 (348)
T ss_pred hhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcc--hhhhhhhHHHHHH
Confidence 8999999999999999999999999999999999983 24789999999998765543332 3345688888877
Q ss_pred HHHHHH
Q 001676 314 IESLVE 319 (1033)
Q Consensus 314 v~~l~~ 319 (1033)
..+++.
T Consensus 242 ~~~~~q 247 (348)
T COG3614 242 FEKLVQ 247 (348)
T ss_pred Hhhhhh
Confidence 776654
No 45
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.85 E-value=1.5e-19 Score=199.35 Aligned_cols=209 Identities=21% Similarity=0.345 Sum_probs=172.7
Q ss_pred HHHHHhHHhhHHHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001676 439 QFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 439 ~Fla~vSHELRTPLn~I~g~le---lL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
+-+.++||||..|||++..++= ...+...+.....++..|..-.+++-.+|+.+-.|+|-.+++-.+ .|++|+++
T Consensus 453 qTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~~ 530 (673)
T COG4192 453 QTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNSV 530 (673)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHHH
Confidence 5678999999999999998863 333444556668999999999999999999999999988887555 47899999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCC--CeEEEEEEEeecccccchhhhhh
Q 001676 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK--GHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~--G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
++.+.+++..+.+.+.+.+..-.+ . .+|.||..+++||+.||+-||+.++.. ..|.+.+.
T Consensus 531 v~~AweLl~~khk~rQ~~Li~ptD--~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~--------------- 592 (673)
T COG4192 531 VEQAWELLQTKHKRRQIKLINPTD--D-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL--------------- 592 (673)
T ss_pred HHHHHHHHHhhhhhccccccCCcc--c-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee---------------
Confidence 999999999999988888865432 2 379999999999999999999998743 33433321
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001676 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
..+...+++.|.|+|.|-|-+..+++|.||... +.-|
T Consensus 593 -------------------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFtts------K~vg 629 (673)
T COG4192 593 -------------------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTS------KEVG 629 (673)
T ss_pred -------------------------------------cCcccceEEEEecCCCCCchhHHHHhcCCcccc------cccc
Confidence 011224789999999999999999999999642 4469
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
.|||||||..|++.|.|.+.+.|...+|..+.+.+..
T Consensus 630 LGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 630 LGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred cccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 9999999999999999999999999999998877644
No 46
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.82 E-value=9.8e-20 Score=195.67 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=109.9
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..||+|.++.+|.+|++.+. .. ||+|++|++||+|||+++|++||+.
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~-~dlviLD~~lP~~dG~~~~~~iR~~----------- 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-EQ-PDLVLLDLMLPDLDGLELCRRLRAK----------- 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cC-CCEEEEECCCCCCCHHHHHHHHHhh-----------
Confidence 7999999999999999999999999999999999999985 45 9999999999999999999999963
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 1028 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~~ 1028 (1033)
....+|||++||..+.+++..++++|||||++|||++++|..+|+..+...
T Consensus 69 ----------~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 69 ----------KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred ----------cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 133689999999999999999999999999999999999999999887764
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.82 E-value=6.7e-19 Score=202.60 Aligned_cols=186 Identities=13% Similarity=0.160 Sum_probs=141.6
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
.+.+|++.++||+||||+.|.|+++++... ....++++.+...+.+|..+++++++.++ ..++++.++
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 456789999999999999999999987622 23456788889999999999999987653 356899999
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHHhc---c-CCCeEEEEEEEeecccccchhh
Q 001676 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKF---T-EKGHIFVTVYLVEEVVDSIEVE 590 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD-~~rL~QIL~NLl~NAiKf---T-~~G~I~v~v~~~~~~~~~i~i~ 590 (1033)
+++++..+... +..+.+..+ .+ .+..| ...|.||+.||+.||+|| + +.|.|.|.+...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~---------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS---------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec----------
Confidence 99998877543 344444322 11 22222 356999999999999999 4 357777765211
Q ss_pred hhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCC
Q 001676 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (1033)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~ 670 (1033)
.+...+.+.|.|+|.|++++
T Consensus 300 -----------------------------------------~~~~~~~i~v~d~G~~~~~~------------------- 319 (361)
T PRK13559 300 -----------------------------------------PEGAGFRIDWQEQGGPTPPK------------------- 319 (361)
T ss_pred -----------------------------------------CCCCeEEEEEECCCCCCCCC-------------------
Confidence 01124789999999997654
Q ss_pred CCcccchHHHHHHHHHH-cCCEEEEEEeCCCceEEEEEEEeC
Q 001676 671 HGGTGIGLSISKYLVGR-MKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 671 ~~GtGLGLsI~k~Lv~~-mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
..|+|+||.||+++++. |||+|++++. +.||+|++++|..
T Consensus 320 ~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 24789999999999987 9999999998 5799999999963
No 48
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.81 E-value=2.4e-19 Score=170.99 Aligned_cols=109 Identities=36% Similarity=0.595 Sum_probs=97.2
Q ss_pred ecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCC
Q 001676 548 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (1033)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1033)
||+.+|++|+.||++||+||+++ |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999966 88888775321
Q ss_pred CCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 001676 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706 (1033)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~ 706 (1033)
..+.|+|+|+|.|||++.++++|+||++.+. .....+|+||||++|+.++++|+|++++.|.++.||+|+|
T Consensus 36 --------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~ 106 (111)
T PF02518_consen 36 --------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTF 106 (111)
T ss_dssp --------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEE
T ss_pred --------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEE
Confidence 2578999999999999999999999999876 2334578999999999999999999999999999999999
Q ss_pred EEEe
Q 001676 707 TAVF 710 (1033)
Q Consensus 707 ~lp~ 710 (1033)
++|+
T Consensus 107 ~~p~ 110 (111)
T PF02518_consen 107 TLPL 110 (111)
T ss_dssp EEEG
T ss_pred EEEC
Confidence 9996
No 49
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.77 E-value=5.4e-17 Score=197.95 Aligned_cols=193 Identities=20% Similarity=0.204 Sum_probs=140.3
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHH----HhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecH
Q 001676 439 QFLATVSHEIRTPMNGVLGMLDM----LMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (1033)
Q Consensus 439 ~Fla~vSHELRTPLn~I~g~lel----L~~~--~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL 512 (1033)
+..+.++||+++|++.++.++.+ +.+. ...+...+.+..+.....++...+.+++...+ ....++++
T Consensus 362 ~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l 434 (565)
T PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANL 434 (565)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCH
Confidence 34456999999999888877653 3322 11234456667777777777777777776543 23456899
Q ss_pred HHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhh
Q 001676 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 513 ~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
.+.+.+++..+.... ++.+.+......+.....++.++.|++.||+.||+||++.|.|.+.+...
T Consensus 435 ~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~------------ 499 (565)
T PRK10935 435 GSALEEMLDQLRNQT---DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN------------ 499 (565)
T ss_pred HHHHHHHHHHHHHhh---CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc------------
Confidence 999999999887542 33444333211111223355679999999999999999988877765421
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001676 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
+...+.++|.|+|+|||++. ..
T Consensus 500 ----------------------------------------~~~~~~i~V~D~G~Gi~~~~------------------~~ 521 (565)
T PRK10935 500 ----------------------------------------PDGEHTVSIRDDGIGIGELK------------------EP 521 (565)
T ss_pred ----------------------------------------CCCEEEEEEEECCcCcCCCC------------------CC
Confidence 01247899999999999631 24
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
|+||||+||+++++.|||+|+++|.+++||+|++++|..
T Consensus 522 ~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~ 560 (565)
T PRK10935 522 EGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQ 560 (565)
T ss_pred CCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCC
Confidence 789999999999999999999999999999999999975
No 50
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.73 E-value=1.9e-16 Score=181.87 Aligned_cols=194 Identities=26% Similarity=0.387 Sum_probs=139.9
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHH
Q 001676 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518 (1033)
Q Consensus 439 ~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~ 518 (1033)
+-+...+||.+|=|+.|.|++++=.- ++..+|+..+.+.-+. .++.+.. ++. +..+.-
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~y----d~a~~~I~~~~~~qq~---~~~~l~~--~i~-------------~~~lAg 392 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGEY----DDALDYIQQESEEQQE---LIDSLSE--KIK-------------DPVLAG 392 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHhhhhh---hHHHHHH--hcc-------------cHHHHH
Confidence 34667899999999999999986221 2334555444433322 2222211 111 123333
Q ss_pred HHHHHHhhhhccCcEEEEEeCCCCCce-EEecHHHHHHHHHHHHHHHHhccC----CCeEEEEEEEeecccccchhhhhh
Q 001676 519 VLSLFSGKSQDKGVELAVYISDRVPET-LIGDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETEL 593 (1033)
Q Consensus 519 v~~~~~~~a~~k~i~l~~~i~~~~p~~-v~gD~~rL~QIL~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~i~i~~~~ 593 (1033)
.+---...|+++|+++.++.+..+|.. -.-|+.-+--|+-||++||+..+. +..|.+.+.
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~--------------- 457 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS--------------- 457 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEE---------------
Confidence 444445678999999999877666541 234889999999999999999874 234444432
Q ss_pred ccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc
Q 001676 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (1033)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G 673 (1033)
.+...+.|+|+|||+|||++.++++|+.=|..+ ..+|
T Consensus 458 --------------------------------------~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk-----~~~~ 494 (537)
T COG3290 458 --------------------------------------DRGDELVIEVADTGPGIPPEVRDKIFEKGVSTK-----NTGG 494 (537)
T ss_pred --------------------------------------ecCCEEEEEEeCCCCCCChHHHHHHHhcCcccc-----CCCC
Confidence 122368899999999999999999999866432 2478
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 674 tGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
.|.||++||++|+.+||.|+++|+++.||+|++.+|...
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 999999999999999999999999999999999999854
No 51
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.71 E-value=6.2e-16 Score=182.79 Aligned_cols=256 Identities=17% Similarity=0.164 Sum_probs=182.6
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++.........+...|..+..+.+..+++..+.. ..++++++|...... .....+..++.........
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~---~g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGM---DGFEVCRRLKSDPATTHIP 78 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCC---CHHHHHHHHHcCcccCCCC
Confidence 68999999999988888888899999999999999887754 346788887654332 2233455555432222223
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCC-------CCCC----CCCCcchhhccCCCCe
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG-------NIRN----WELPSMSLRHLLLGRK 888 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~-------~~~~----~~~~~~~~~~~~~~~~ 888 (1033)
++++............. ..+...++.||+....+...+...+...... ...+ ...+...........+
T Consensus 79 ii~~s~~~~~~~~~~~~-~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T PRK09581 79 VVMVTALDDPEDRVRGL-EAGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAYANKDEDGR 157 (457)
T ss_pred EEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccccccccCce
Confidence 33343322211111111 1255678999999988877766554311000 0000 0000000111234568
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccc
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
||||||++..+..+..+|.. ++.+..+.++.+|+..+. .+.||+|++|+.||.|||++++++||+..
T Consensus 158 vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i~~~~----------- 224 (457)
T PRK09581 158 ILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQLRSKE----------- 224 (457)
T ss_pred EEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHHHhcc-----------
Confidence 99999999999999999965 577788999999999874 57899999999999999999999999732
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001676 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
..+++|||++|++.+.+...+|+++|++||+.||++.++|...+.+
T Consensus 225 ---------~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~ 270 (457)
T PRK09581 225 ---------RTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRT 270 (457)
T ss_pred ---------ccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHH
Confidence 1347999999999999999999999999999999999999988865
No 52
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.71 E-value=1.4e-15 Score=186.08 Aligned_cols=182 Identities=17% Similarity=0.184 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHHHHHHHHhh
Q 001676 449 RTPMNGVLGMLDMLM--DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 526 (1033)
Q Consensus 449 RTPLn~I~g~lelL~--~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v~~~~~~~ 526 (1033)
..+|+.+...+..+. ....++..++.+..+....+.+...+.+++...+.. ..+.++.+.+++++..+...
T Consensus 374 ~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~~ 446 (569)
T PRK10600 374 AQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSAR 446 (569)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHHH
Confidence 334455554444333 223456677889999999999999999999877642 34578899999998888755
Q ss_pred hhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcc
Q 001676 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606 (1033)
Q Consensus 527 a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~ 606 (1033)
. ++.+.+.++...+.....++..+.||+.|+++||+||++.+.|.|++...
T Consensus 447 ~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~-------------------------- 497 (569)
T PRK10600 447 F---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN-------------------------- 497 (569)
T ss_pred h---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc--------------------------
Confidence 4 34444443321111111244569999999999999999888877765321
Q ss_pred cccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHH
Q 001676 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 686 (1033)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~ 686 (1033)
...+.|+|.|+|+|||++. ..|+|+||+||+++++
T Consensus 498 ---------------------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~~ 532 (569)
T PRK10600 498 ---------------------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRAQ 532 (569)
T ss_pred ---------------------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHHH
Confidence 1246899999999999862 1368999999999999
Q ss_pred HcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 687 RMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 687 ~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
.|||+|.+.|.+++||+|++++|..
T Consensus 533 ~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 533 SLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HcCCEEEEEECCCCCEEEEEEEecC
Confidence 9999999999999999999999874
No 53
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.70 E-value=9.3e-17 Score=185.20 Aligned_cols=117 Identities=33% Similarity=0.480 Sum_probs=110.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..|..+..+|...||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~---------- 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR---------- 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhh----------
Confidence 4799999999999999999999999999999999999999654 79999999999999999999999984
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||+||++.+.++..+|++.||.|||.|||+.++|...|++.++
T Consensus 74 ------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~ 121 (464)
T COG2204 74 ------------DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121 (464)
T ss_pred ------------CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999998765
No 54
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.70 E-value=1.3e-16 Score=151.38 Aligned_cols=111 Identities=36% Similarity=0.564 Sum_probs=104.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCC-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
||||||++..+..+...|+..|+ .|..+.++.+|++.+. ++.||+|++|+.||+++|.+++++||+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~iiid~~~~~~~~~~~~~~i~~~----------- 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-KHPPDLIIIDLELPDGDGLELLEQIRQI----------- 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-HSTESEEEEESSSSSSBHHHHHHHHHHH-----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-ccCceEEEEEeeeccccccccccccccc-----------
Confidence 79999999999999999999999 9999999999999994 5779999999999999999999999973
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 1022 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1022 (1033)
.+++|||++|+..+.....+++++|+++|+.||++.++|.++|+
T Consensus 69 -----------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 69 -----------NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp -----------TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred -----------cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 24799999999999999999999999999999999999999874
No 55
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.69 E-value=9.9e-17 Score=175.85 Aligned_cols=119 Identities=32% Similarity=0.489 Sum_probs=109.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
..+||+|||.+.++..++..|+..||.+..++||++|+++.. .+++|+||+|++||+|||+|+|++|+.+.+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-~~~~dlvllD~~mp~mdg~ev~~~lk~~~p------- 85 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGAEVLNKLKAMSP------- 85 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-ccCCceEEeeccCCCccHHHHHHHHHhcCC-------
Confidence 358999999999999999999999999999999999999885 466999999999999999999999998543
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.+.++|||++|+.++.++..+|+.+|+++||.||+++.+|...++..
T Consensus 86 ------------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~ 132 (360)
T COG3437 86 ------------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSH 132 (360)
T ss_pred ------------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999888643
No 56
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=6.8e-16 Score=150.26 Aligned_cols=119 Identities=34% Similarity=0.523 Sum_probs=105.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChH-HHHHHhCCCC-CccEEEEcCCCCCCCHHHHHHHHHhcccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPH-QFDACFMDIQMPEMDGFEATKIIREMEHNFNNR 963 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~-eAl~~l~~~~-~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~ 963 (1033)
+.+||+|||++.++..+..+|...|+.+..+.+|. +|++.+. .+ .||+|++|++||+|||+++++++|+.
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~-~~~~~dlii~D~~mp~~~G~~~~~~l~~~------- 76 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR-ELPQPDLILLDINMPGMDGIELLRRLRAR------- 76 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhC-------
Confidence 56899999999999999999999999999999996 9999995 45 59999999999999999999999973
Q ss_pred ccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHhhCCC
Q 001676 964 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQ-LYREVSRFFPP 1027 (1033)
Q Consensus 964 ~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~-L~~~v~r~~~~ 1027 (1033)
...+|+|++|++.......+++++|+++|+.||+...+ |..++.++...
T Consensus 77 ---------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 77 ---------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred ---------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 23578999999999998888999999999999977666 78888876543
No 57
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.68 E-value=1.9e-16 Score=182.20 Aligned_cols=115 Identities=27% Similarity=0.413 Sum_probs=105.5
Q ss_pred eEEEEeCCHHHHHHHHHHHh--hCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~--~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+||||||.+..|+.++.++. .+|+.|+ +|.||++|++.++ ..+||+|++||.||+|||+++++.|++.
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~-e~~pDiviTDI~MP~mdGLdLI~~ike~-------- 73 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ-ETQPDIVITDINMPGMDGLDLIKAIKEQ-------- 73 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 79999999999999999997 5688655 7999999999995 5789999999999999999999999984
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+.+-+|++|+..+=+.+.+|+++|++|||.||++.++|..++.+..
T Consensus 74 --------------~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~ 120 (475)
T COG4753 74 --------------SPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKII 120 (475)
T ss_pred --------------CCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999998764
No 58
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.63 E-value=6.5e-15 Score=168.82 Aligned_cols=123 Identities=26% Similarity=0.395 Sum_probs=113.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 885 ~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
..++||||||+..++..+..+|...|+.|..+.+|++|+..+.+ .+||+||.|+.||+||||++|+++|+.+.
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~------ 203 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLER------ 203 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccc------
Confidence 45799999999999999999999999999999999999999964 58999999999999999999999998642
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPPI 1028 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~~ 1028 (1033)
...+|||++|...+.....++++.|++||++||++..+|...+++.++..
T Consensus 204 --------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~ 253 (435)
T COG3706 204 --------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRK 253 (435)
T ss_pred --------------cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999999999999999988876543
No 59
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.62 E-value=4.2e-15 Score=149.25 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=108.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.-|-||||+...|+.+..+|...||++.+..++.+-+... ....+-++++|+.||+|+|.|+-+++++.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-~~~~pGclllDvrMPg~sGlelq~~L~~~---------- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-PLDRPGCLLLDVRMPGMSGLELQDRLAER---------- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-cCCCCCeEEEecCCCCCchHHHHHHHHhc----------
Confidence 4699999999999999999999999999999999999985 46789999999999999999999999873
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
....|||++|++.+..-..+++++|+-|||.|||+.+.|+++|++.+.
T Consensus 74 ------------~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 74 ------------GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred ------------CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999988654
No 60
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.62 E-value=3.8e-14 Score=172.47 Aligned_cols=146 Identities=18% Similarity=0.282 Sum_probs=109.6
Q ss_pred ecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHH---HHHHHHHHHhcc-------------CCCeE
Q 001676 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHI 573 (1033)
Q Consensus 510 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QI---L~NLl~NAiKfT-------------~~G~I 573 (1033)
+.+..+++..-.+.+..+...+.++.+.+... .+..|+..+.++ |.||+.||++|+ +.|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 34566666666666666665555555555433 256799999999 679999999996 23556
Q ss_pred EEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhH
Q 001676 574 FVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653 (1033)
Q Consensus 574 ~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~ 653 (1033)
.+++.. +...+.|+|+|+|.||+++.+
T Consensus 420 ~l~a~~-----------------------------------------------------~~~~v~I~V~DdG~GId~e~i 446 (670)
T PRK10547 420 ILSAEH-----------------------------------------------------QGGNICIEVTDDGAGLNRERI 446 (670)
T ss_pred EEEEEE-----------------------------------------------------cCCEEEEEEEeCCCCCCHHHH
Confidence 555431 112478999999999998654
Q ss_pred ---------------------hhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 654 ---------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 654 ---------------------~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
+.||+|||..... .+..+|+|+||+|||++++.|||+|.++|.+|+||+|++++|+..
T Consensus 447 ~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 447 LAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred HHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 4699997754332 234579999999999999999999999999999999999999854
No 61
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.62 E-value=6.1e-15 Score=157.09 Aligned_cols=117 Identities=30% Similarity=0.377 Sum_probs=106.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC-CEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYG-AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g-~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||++..|..++.+|...+ ++|+ .+.||.++++.+ ....||+|+||+.||+|||+|+++.||+.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~-~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~--------- 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-RELKPDVVLLDLSMPGMDGLEALKQLRAR--------- 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh-hhcCCCEEEEcCCCCCCChHHHHHHHHHH---------
Confidence 59999999999999999998876 7755 567799999986 46789999999999999999999999963
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.++++|+++|++.+.+...+++++|+++|+.|..+.++|.++|+..+..
T Consensus 72 -------------~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 72 -------------GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred -------------CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4568999999999999999999999999999999999999999987644
No 62
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.61 E-value=4.1e-15 Score=152.20 Aligned_cols=115 Identities=27% Similarity=0.442 Sum_probs=104.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||++...++-+.+++.. ||.+. +|.++++|..++. ...|||||+|+-||+.||++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~-~~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH-hhCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999975 77655 7899999999985 5678999999999999999999999973
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
+.++-||++||..+.++..+++++|+-|||.|||..+.|.+++.+|.
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999874
No 63
>PLN03029 type-a response regulator protein; Provisional
Probab=99.56 E-value=3.1e-14 Score=153.16 Aligned_cols=118 Identities=26% Similarity=0.409 Sum_probs=103.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCC-------------------CCccEEEEcCCCCCCCH
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-------------------HQFDACFMDIQMPEMDG 946 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~-------------------~~~DlIlmDi~MP~mdG 946 (1033)
..+||||||++.++..+..+|+..||.|.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 45899999999999999999999999999999999999987321 24789999999999999
Q ss_pred HHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001676 947 FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 947 ~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
+++++.||+.. ....+|||++|+....+...+|+++|+++|+.||++..+|...+..
T Consensus 88 ~e~l~~ir~~~--------------------~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 88 YDLLKKIKESS--------------------SLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred HHHHHHHHhcc--------------------ccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHH
Confidence 99999999732 1236899999999999999999999999999999999999766543
No 64
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.53 E-value=1.2e-13 Score=148.80 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=103.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||||||++..+..+...|... |+. |..+.++.+|++.+. ...||+|++|+.||++||+++++.||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~-~~~pdlvllD~~mp~~~gle~~~~l~~~-------- 75 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-RFKPGLILLDNYLPDGRGINLLHELVQA-------- 75 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhc--------
Confidence 58999999999999999999864 774 678999999999985 5679999999999999999999999973
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.+.+|||++|+..+.+...+++++|++||+.||++.++|..+|+++
T Consensus 76 --------------~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~ 121 (225)
T PRK10046 76 --------------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 (225)
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHH
Confidence 2347899999999999999999999999999999999999999774
No 65
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.53 E-value=1.6e-13 Score=146.52 Aligned_cols=117 Identities=22% Similarity=0.351 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||++||+++++.||+.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQW---------- 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcC----------
Confidence 37999999999999999999999999999999999998874 4679999999999999999999999852
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+|||++|+....+...+++++|+++|+.||++.++|...+++....
T Consensus 71 -------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 71 -------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 258999999999999999999999999999999999999999876643
No 66
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.52 E-value=1.8e-13 Score=161.30 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=92.1
Q ss_pred EEecHHHHHHHHHHHHHHHHhccCCCe----EEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCC
Q 001676 546 LIGDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (1033)
Q Consensus 546 v~gD~~rL~QIL~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (1033)
+.++...|.|++.|||+||++|++.++ |.|.+...+
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~---------------------------------------- 69 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD---------------------------------------- 69 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc----------------------------------------
Confidence 345678899999999999999997643 444442110
Q ss_pred CCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC--CCCCCcccchHHHHHHHHHHcCCE-EEEEEeC
Q 001676 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (1033)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~--s~~~~GtGLGLsI~k~Lv~~mgG~-I~v~S~~ 698 (1033)
.+...+.|+|+|||+||+++.++++|++|++.+... ....||+||||++|+.++++|+|. |.+.|.+
T Consensus 70 ----------~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~ 139 (535)
T PRK04184 70 ----------EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISST 139 (535)
T ss_pred ----------CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEec
Confidence 011246799999999999999999999997654322 234578999999999999999997 9999999
Q ss_pred CCce-EEEEEEEeCC
Q 001676 699 NIGS-TFTFTAVFGN 712 (1033)
Q Consensus 699 g~GS-tF~~~lp~~~ 712 (1033)
+.|+ .|+|++++..
T Consensus 140 ~~g~~~~~~~l~id~ 154 (535)
T PRK04184 140 GGSKKAYYFELKIDT 154 (535)
T ss_pred CCCceEEEEEEEecc
Confidence 9998 8999998753
No 67
>PRK11173 two-component response regulator; Provisional
Probab=99.52 E-value=2.1e-13 Score=147.30 Aligned_cols=117 Identities=23% Similarity=0.366 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||.+||+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-ENDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999862
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
+.+|||++|+........+++++|+++|+.||++.++|...+...+..
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 258999999999999999999999999999999999999888776543
No 68
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.51 E-value=3e-13 Score=144.35 Aligned_cols=117 Identities=28% Similarity=0.435 Sum_probs=107.8
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+. .+.||+|++|+.||.++|+++++++|+.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~lr~~----------- 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSN----------- 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999884 5679999999999999999999999862
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|+..+.+...+++++|++||+.||++.++|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 70 -----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 2368999999999999999999999999999999999999999887654
No 69
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.50 E-value=4.2e-13 Score=143.62 Aligned_cols=117 Identities=28% Similarity=0.464 Sum_probs=107.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.|.++.++.++++.+. ...||+|++|+.||.+||+++++.+|+.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~~~~~~g~~~~~~lr~~----------- 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWDIVRMLRSA----------- 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999874 4679999999999999999999999963
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+|||++|+....+...+++++|++||+.||++.++|...+...+..
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 70 -----------NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred -----------CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 2368999999999999999999999999999999999999999876643
No 70
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.49 E-value=4.9e-13 Score=141.81 Aligned_cols=116 Identities=28% Similarity=0.476 Sum_probs=106.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|...|+.+.++.++.+++..+. ...||+|++|+.||+++|+++++.+|..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~----------- 69 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-SGHYSLVVLDLGLPDEDGLHLLRRWRQK----------- 69 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999884 4679999999999999999999999862
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+....+...+++++|++||+.||++.++|...+.....
T Consensus 70 -----------~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 70 -----------KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999999887654
No 71
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.49 E-value=6e-13 Score=143.71 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=108.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
..+|||+||++..+..+...|+..|+.+..+.++.++++.+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~--------- 74 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-RESFHLMVLDLMLPGEDGLSICRRLRSQ--------- 74 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 358999999999999999999999999999999999999874 5679999999999999999999999962
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|+..+.+....++++|+++|+.||++.++|...+...+..
T Consensus 75 -------------~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 75 -------------NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred -------------CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999887653
No 72
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.48 E-value=5.1e-13 Score=142.21 Aligned_cols=115 Identities=26% Similarity=0.372 Sum_probs=105.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||+|||++..+..+...|...|+.|..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-NQHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 47999999999999999999999999999999999999884 4679999999999999999999999862
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
+++|||++|+..+.....+++++|++||+.||++.++|...+...+
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~ 117 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLL 117 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHH
Confidence 2589999999999999999999999999999999999998887654
No 73
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.47 E-value=5.2e-13 Score=145.14 Aligned_cols=114 Identities=20% Similarity=0.369 Sum_probs=101.3
Q ss_pred eEEEEeCCHHHHHHHHHHHhh-CCCEE-EEEcChHHHHHHhCC-CCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKR-YGAAV-VCVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~-~g~~v-~~a~~g~eAl~~l~~-~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+||||||++..+..+..+|.. .|+.+ ..+.++.+|++.+.. ...||+||+|+.||+|||+++++.|++.
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~-------- 74 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-------- 74 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh--------
Confidence 699999999999999999986 46764 478899999988742 3569999999999999999999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
.+.+|||++|+..+.+...+++++|+++|+.||++.++|..+|.+
T Consensus 75 --------------~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~ 119 (239)
T PRK10430 75 --------------GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 (239)
T ss_pred --------------CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 236899999999999999999999999999999999999999875
No 74
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.47 E-value=8.1e-14 Score=147.62 Aligned_cols=115 Identities=31% Similarity=0.505 Sum_probs=102.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+|+||||+...-..+..+|++.|..+-.++...+|++.+. .+.||+||+||.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 6999999999999999999999999999999999999994 688999999999999999999999998643
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+|||++|++..-++ .++..-.+||+.||++++.|-++|.|..+.
T Consensus 72 -------------~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 72 -------------AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred -------------cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 589999999865443 445555699999999999999999987654
No 75
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.47 E-value=8.2e-13 Score=141.53 Aligned_cols=120 Identities=23% Similarity=0.323 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
++||||||++..+..+...|+..|+.+..+.++.+|++.+. .+.||+|++|+.||.++|+++++.||+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~--------- 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGSGIQFIKHLKRES--------- 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhcc---------
Confidence 57999999999999999999999999999999999999884 46799999999999999999999998631
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+.+|||++|+..+.....+++++|+++|+.||++.++|...+......
T Consensus 73 -----------~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 73 -----------MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred -----------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 12468999999999999999999999999999999999999988876543
No 76
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.47 E-value=7.6e-13 Score=143.12 Aligned_cols=116 Identities=23% Similarity=0.297 Sum_probs=106.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.+..+.++.+|+..+. .+.||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-REQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999884 5679999999999999999999999962
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+|||++|+........+++++|++||+.||++.++|...++..+..
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 246999999999999999999999999999999999999999876543
No 77
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.46 E-value=7.3e-13 Score=143.64 Aligned_cols=115 Identities=19% Similarity=0.353 Sum_probs=103.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||+|||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||.++|+++++.||+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-SETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999884 5679999999999999999999999852
Q ss_pred ccchhhhcccCCCCCcEEEEccC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTAD-VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~-~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.++|||++|+. .......+++++|+++|+.||++.++|...++..+.
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 25899999985 466777899999999999999999999998877654
No 78
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.46 E-value=9.8e-13 Score=140.82 Aligned_cols=114 Identities=27% Similarity=0.459 Sum_probs=104.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||++||+++++.||+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l~~~----------- 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKELRQT----------- 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 7999999999999999999999999999999999999874 369999999999999999999999862
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
. .+|||++|+........+++++|+++|+.||++.++|...+.+...
T Consensus 70 -----------~-~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 70 -----------H-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred -----------C-CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 1 2899999999999999999999999999999999999999987654
No 79
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.46 E-value=9.9e-13 Score=139.69 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~g~~~~~~l~~~~--------- 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERGPDLILLDWMLPGTSGIELCRRLRRRP--------- 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-hcCCCEEEEECCCCCCcHHHHHHHHHccc---------
Confidence 57999999999999999999999999999999999999884 46799999999999999999999998631
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+.+|||++|+..+.....+++++|+++|+.||++.++|..++......
T Consensus 73 -----------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 73 -----------ETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred -----------cCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 12468999999999999999999999999999999999999999887643
No 80
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.45 E-value=1.5e-12 Score=138.55 Aligned_cols=116 Identities=26% Similarity=0.454 Sum_probs=106.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||+|||++..+..+...|+..|+.+.++.++.+++..+. ...||+|++|+.||+++|+++++.||+.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 6999999999999999999999999999999999999884 5679999999999999999999999862
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
..+|||++|+..+.+...+++++|+++|+.||++.++|...+...+..
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 257999999999999999999999999999999999999999886654
No 81
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.45 E-value=1.2e-12 Score=138.61 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=106.3
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|+..|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~i~~~----------- 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGRDILREWREK----------- 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999999874 4679999999999999999999999863
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+.+|||++|+....+...+++++|+++|+.||++.++|..++.....
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 70 -----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred -----------CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999999999999999998887654
No 82
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.45 E-value=1.2e-12 Score=140.03 Aligned_cols=117 Identities=26% Similarity=0.345 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC--CCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~--mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
++||||||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||. ++|+++++.||..
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~~~g~~~~~~i~~~-------- 71 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-QRLPDLAIIDIGLGEEIDGGFMLCQDLRSL-------- 71 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-hCCCCEEEEECCCCCCCCCHHHHHHHHHhc--------
Confidence 47999999999999999999999999999999999999884 467999999999997 5899999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+....+....++++|+++|+.||++.++|..+++....
T Consensus 72 --------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 72 --------------SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred --------------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999999999988877654
No 83
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.43 E-value=1.9e-12 Score=142.50 Aligned_cols=119 Identities=26% Similarity=0.332 Sum_probs=104.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||||||++..+..+...|+.. ++.+ .++.+|.+|++.+. ...||+|++|+.||+|||++++++||+...
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-EQQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 47999999999999999999864 5554 47899999999885 567999999999999999999999997321
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
...+|||++|+........+++++|+++|+.||++.++|...+.++..
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 224799999999999999999999999999999999999999988754
No 84
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.43 E-value=2.4e-12 Score=136.08 Aligned_cols=116 Identities=27% Similarity=0.465 Sum_probs=106.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccc
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
||++||++..+..+...|...|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.||+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~------------ 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-KDDYDLIILDVMLPGMDGWQILQTLRRS------------ 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcc------------
Confidence 589999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|+..+.+...+++++|+++|+.||++.++|...+.+.+..
T Consensus 68 ----------~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 68 ----------GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred ----------CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 2368999999999999999999999999999999999999999876544
No 85
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.43 E-value=2.5e-12 Score=119.92 Aligned_cols=109 Identities=48% Similarity=0.716 Sum_probs=92.1
Q ss_pred ecHHHHHHHHHHHHHHHHhccCC-CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCC
Q 001676 548 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (1033)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~~-G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1033)
+|+..|.+++.|++.||+++... +.|.|.+...+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~--------------------------------------------- 35 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDG--------------------------------------------- 35 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcC---------------------------------------------
Confidence 48899999999999999999976 66666653211
Q ss_pred CCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEE
Q 001676 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706 (1033)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~ 706 (1033)
..+.|.|.|+|.|++++..+++|.+++.... .....++.|+||++|+.+++.|+|++.+.+.++.|++|+|
T Consensus 36 --------~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 106 (111)
T smart00387 36 --------DHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTI 106 (111)
T ss_pred --------CEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 2367999999999999999999999987543 2334567999999999999999999999999899999999
Q ss_pred EEEe
Q 001676 707 TAVF 710 (1033)
Q Consensus 707 ~lp~ 710 (1033)
.+|+
T Consensus 107 ~~~~ 110 (111)
T smart00387 107 TLPL 110 (111)
T ss_pred EeeC
Confidence 9986
No 86
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.41 E-value=4.3e-12 Score=135.18 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|...|+.+..+.++.+++..+. ...||++++|+.||.++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQLLAF---------- 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 47999999999999999999999999999999999999874 5679999999999999999999999963
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|+.........++++|+++|+.||++.++|..++...+..
T Consensus 73 ------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 73 ------------HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred ------------CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 2368999999999999999999999999999999999999988876543
No 87
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.40 E-value=3.3e-12 Score=136.51 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=104.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCC-E-EEEEcChHHHHHHhCCCCCccEEEEcCCCCC---CCHHHHHHHHHhcccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPE---MDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~-~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~---mdG~ea~~~IR~~e~~~~ 961 (1033)
.+||||||++..+..++.+|+..++ . +..+.++.++++.+. ...||+||+|+.||+ ++|++++++||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~----- 77 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYIKRH----- 77 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH-----
Confidence 4799999999999999999988765 3 667899999999884 467999999999999 5999999999863
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+..+.....+++++|+++|+.||++.++|..+++....
T Consensus 78 -----------------~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 -----------------FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred -----------------CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 346899999999999999999999999999999999999999987654
No 88
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.40 E-value=3.3e-12 Score=123.25 Aligned_cols=115 Identities=24% Similarity=0.346 Sum_probs=107.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
+..|||||+....+.+...+++.||.|.++++..||+..++ ...|...+.|+.|-+-+|+++++.||+.
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-t~~PayAvvDlkL~~gsGL~~i~~lr~~---------- 78 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-TAPPAYAVVDLKLGDGSGLAVIEALRER---------- 78 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-cCCCceEEEEeeecCCCchHHHHHHHhc----------
Confidence 46999999999999999999999999999999999999985 5789999999999999999999999984
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.....||++|+++...+..++.+.|+++|+.||-+.+++..++.+-
T Consensus 79 ------------~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 79 ------------RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred ------------CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 3357899999999999999999999999999999999999988765
No 89
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.39 E-value=5.8e-12 Score=135.55 Aligned_cols=116 Identities=31% Similarity=0.455 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||++||++..+..+...|...|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.|++.
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~---------- 75 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-KEQPDLVILDVMMPKLDGYGVCQEIRKE---------- 75 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 47999999999999999999999999999999999999874 5679999999999999999999999861
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
+++|||++|+....+...+++++|+++|+.||++.++|...+.....
T Consensus 76 -------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 76 -------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred -------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 25899999999999999999999999999999999999998877653
No 90
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.38 E-value=6.8e-12 Score=131.65 Aligned_cols=117 Identities=16% Similarity=0.297 Sum_probs=106.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
+||++||++..+..+...|+..|+.+. .+.++.++++.+. ...||+|++|+.||.++|+++++.++..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~---------- 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKR---------- 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 699999999999999999999999987 6899999999885 5679999999999999999999999863
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+..|||++|+........+++++|+++|+.||++.++|...++.....
T Consensus 71 ------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 71 ------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred ------------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2357899999999999999999999999999999999999999887543
No 91
>PRK14084 two-component response regulator; Provisional
Probab=99.38 E-value=5e-12 Score=137.63 Aligned_cols=113 Identities=27% Similarity=0.343 Sum_probs=98.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC-C-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYG-A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g-~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+|||+||++..+..+..+|+..+ + .+..+.++.+|+..+. .+.||+||+|++||+|||+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-~~~~dlv~lDi~m~~~~G~~~~~~i~~~--------- 71 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-INQYDIIFLDINLMDESGIELAAKIQKM--------- 71 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 69999999999999999999876 4 5778999999999885 4679999999999999999999999973
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+.+|||++|+... ...+++++|+++|+.||++.++|..++.++.
T Consensus 72 -------------~~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~ 116 (246)
T PRK14084 72 -------------KEPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVR 116 (246)
T ss_pred -------------CCCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHH
Confidence 22468999998753 4668999999999999999999999998864
No 92
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.38 E-value=5.2e-12 Score=151.05 Aligned_cols=116 Identities=27% Similarity=0.371 Sum_probs=107.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+..+|...|+.+..+.++.+|+..+. ...||+||+|+.||++||+++++.||+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-~~~~DlvllD~~lp~~dgl~~l~~ir~~---------- 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-SKTPDVLLSDIRMPGMDGLALLKQIKQR---------- 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEECCCCCCCCHHHHHHHHHhh----------
Confidence 48999999999999999999999999999999999999985 5679999999999999999999999862
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+.+|+|++|+....+...+++++|+++|+.||++.++|...+.+.+
T Consensus 73 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 119 (469)
T PRK10923 73 ------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 (469)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHH
Confidence 23689999999999999999999999999999999999999887654
No 93
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.37 E-value=5.9e-12 Score=150.04 Aligned_cols=118 Identities=35% Similarity=0.499 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
..+||||||++..+..+...|...|+.|.++.++.+|+..+. ...||+|++|+.||+++|+++++.|++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlillD~~~p~~~g~~ll~~i~~~--------- 73 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-DIHPDVVLMDIRMPEMDGIKALKEMRSH--------- 73 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 458999999999999999999999999999999999999885 5679999999999999999999999862
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+.+|||++|+..+.+...+++++|++||+.||++.++|...+.+.+.
T Consensus 74 -------------~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 74 -------------ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred -------------CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 246899999999999999999999999999999999999999987654
No 94
>PRK15115 response regulator GlrR; Provisional
Probab=99.36 E-value=5.4e-12 Score=149.82 Aligned_cols=117 Identities=26% Similarity=0.426 Sum_probs=107.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++.++..+...|+..|+.|..+.++.+|+..+. ...||+||+|+.||+|||+++++.+++.
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-~~~~dlvilD~~lp~~~g~~ll~~l~~~---------- 74 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-REKVDLVISDLRMDEMDGMQLFAEIQKV---------- 74 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhc----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+.+|||++|+....+...+++++|+++|+.||++.++|...+.+...
T Consensus 75 ------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 75 ------------QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred ------------CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999987653
No 95
>PRK09483 response regulator; Provisional
Probab=99.36 E-value=1e-11 Score=131.71 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=105.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+|||+||++..+..+...|+.. |+.+. .+.++.+++..+. ...||+|++|+.||+++|+++++.|++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~--------- 72 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-TNAVDVVLMDMNMPGIGGLEATRKILRY--------- 72 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999874 88876 6899999999885 5679999999999999999999999863
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|||++|..........++..|+++|+.||++.++|..++.++...
T Consensus 73 -------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 73 -------------TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3468999999999999999999999999999999999999999887654
No 96
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.35 E-value=6.1e-12 Score=149.43 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=102.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC-----CCHHHHHHHHHhcccccccc
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-----MDGFEATKIIREMEHNFNNR 963 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-----mdG~ea~~~IR~~e~~~~~~ 963 (1033)
||||||++.++..+...| .||.|.++.++.+|++.+. ...||+||+|+.||+ |||++++++|++.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~-~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~------- 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR-RHEPAVVTLDLGLPPDADGASEGLAALQQILAI------- 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh-------
Confidence 689999999999999988 7999999999999999985 567999999999996 9999999999863
Q ss_pred ccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 964 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 964 ~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+..+.+...+++++|++||+.||++.++|...|++.+.
T Consensus 71 ---------------~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 71 ---------------APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ---------------CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 346899999999999999999999999999999999999998876543
No 97
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.35 E-value=1.5e-11 Score=129.21 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=104.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+|||+||++..+..+...|+.. ++.+. .+.++.+++..+. ...||+|++|+.||+++|.++++.++..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~-------- 74 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRIKQI-------- 74 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHh--------
Confidence 47999999999999999999876 57775 6889999998874 5679999999999999999999999862
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+|||++|+........+++++|+++|+.||++.++|..++......
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 75 --------------QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred --------------CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 2358999999999999999999999999999999999999999887654
No 98
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.34 E-value=1.5e-11 Score=128.14 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=101.9
Q ss_pred eEEEEeCCHHHHHHHHHHHhhC-CCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||++..+..+...|+.. ++. +..+.++.+++..+. .+.||+|++|+.||++||+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999854 565 567899999999884 567999999999999999999988863
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+|||++|.....+....++++|+++|+.||++.++|..++.+....
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999999999999987654
No 99
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.34 E-value=1.1e-11 Score=134.21 Aligned_cols=113 Identities=24% Similarity=0.290 Sum_probs=96.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCC-E-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~-~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+|||+||++..+..+..+|+..|. . +..+.++.+++..+. ...||++|+|++||+|||+++++.++..
T Consensus 3 ~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlv~lDi~~~~~~G~~~~~~l~~~--------- 72 (238)
T PRK11697 3 KVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-RLKPDVVFLDIQMPRISGLELVGMLDPE--------- 72 (238)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHhccc---------
Confidence 799999999999999999998883 3 456889999999884 4679999999999999999999988631
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
...+||++|+.. +...++++.|+++|+.||++.++|..++.++..
T Consensus 73 --------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 --------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred --------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 134688999875 456789999999999999999999999988753
No 100
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.34 E-value=6.3e-12 Score=149.03 Aligned_cols=116 Identities=31% Similarity=0.478 Sum_probs=106.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|+..|+.+.++.++.+|+..+. ...||+||+|+.||++||++++++||+.
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~DlvilD~~m~~~~G~~~~~~ir~~---------- 74 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIATLKEIKAL---------- 74 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 58999999999999999999999999999999999999885 5679999999999999999999999973
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+++|||++|++...+...+++++|+++|+.||++.++|...+.+.+
T Consensus 75 ------------~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l 121 (441)
T PRK10365 75 ------------NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred ------------CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999998887654
No 101
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.33 E-value=1.2e-11 Score=141.45 Aligned_cols=114 Identities=28% Similarity=0.350 Sum_probs=98.2
Q ss_pred eEEEEeCCHHHHHHHHHHH-hhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGL-KRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L-~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||++..+..+..+| +..|+.+. .+.++.+|++.+. ...||+|+||+.||+|||++++++|++.
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-~~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-AQPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-ccCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 6999999999999999999 46688876 7899999999985 5679999999999999999999999862
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCc--HHHHHHHHHcCCCEEEeCCC---------CHHHHHHHHHhhC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPF---------EAEQLYREVSRFF 1025 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~--~~~~~~~l~aG~ddyl~KP~---------~~~~L~~~v~r~~ 1025 (1033)
..+|||++|+... .+...+|+++|+++|+.||+ ..++|...+++..
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 1479999998754 55677899999999999999 6677878777654
No 102
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.33 E-value=2.9e-11 Score=130.16 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||.++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 48999999999999999999999999999999999999885 5679999999999999999999999851
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
+.+|||+++..........++++|+++|+.||++.++|...+.....
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 25899999999999999999999999999999999999988877654
No 103
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.32 E-value=1.1e-11 Score=148.13 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=105.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccc
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
||||||++..+..+...|+..|+.|..+.++.+|+..+. .+.||+|++|+.||++||+++++.|++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlVllD~~~p~~~g~~ll~~l~~~------------ 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-RGQPDLLITDVRMPGEDGLDLLPQIKKR------------ 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHHh------------
Confidence 689999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+.+|||++|+........+++++|+++|+.||++.++|...+.+.+
T Consensus 68 ----------~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 68 ----------HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred ----------CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 23589999999999999999999999999999999999999988754
No 104
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.32 E-value=9e-12 Score=108.01 Aligned_cols=66 Identities=38% Similarity=0.748 Sum_probs=61.8
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMD-TELDVTQ-QDYVRTAQASGKALVSLINEVLDQAKVESG 501 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~-~~l~~~q-~~~l~~i~~s~~~L~~LIndlLd~skiesg 501 (1033)
+|.+|++++||||||||++|.++++++.+ ...++++ +++++.+..+++++..+++++++++|+|+|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999999 7788887 999999999999999999999999999987
No 105
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.30 E-value=4e-11 Score=127.08 Aligned_cols=116 Identities=32% Similarity=0.494 Sum_probs=105.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||++||++..+..+...|...|+.+.++.++.++++.+. ...||+|++|+.||+++|++.++.++..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~vild~~~~~~~~~~~~~~i~~~----------- 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-SEMYALAVLDINMPGMDGLEVLQRLRKR----------- 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999999998874 4679999999999999999999999863
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|.....+...+++++|+++|+.||++.++|...+...+.
T Consensus 70 -----------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 70 -----------GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred -----------CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 235899999999999999999999999999999999999998887654
No 106
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.28 E-value=1.8e-11 Score=142.98 Aligned_cols=111 Identities=24% Similarity=0.381 Sum_probs=86.2
Q ss_pred EEecHHHHHHHHHHHHHHHHhccCC-C---eEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCC
Q 001676 546 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (1033)
Q Consensus 546 v~gD~~rL~QIL~NLl~NAiKfT~~-G---~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (1033)
+.+|...|.|++.||++||++|+.. | .|.|.+...
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~----------------------------------------- 60 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI----------------------------------------- 60 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----------------------------------------
Confidence 4568999999999999999999965 3 344443210
Q ss_pred CCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC--CCCCCcccchHHHHHHHHHHcCCE-EEEEEeC
Q 001676 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (1033)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~--s~~~~GtGLGLsI~k~Lv~~mgG~-I~v~S~~ 698 (1033)
+...+.|+|+|+|+||++++++++|++|++.+... ....||.|+||++|+.++++|+|. +.+.|..
T Consensus 61 -----------g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 61 -----------GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred -----------CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 01135799999999999999999999998765432 224578999999999999999999 9999998
Q ss_pred CCceEEEEEEE
Q 001676 699 NIGSTFTFTAV 709 (1033)
Q Consensus 699 g~GStF~~~lp 709 (1033)
+ |+.|..++.
T Consensus 130 ~-g~~~~~~~~ 139 (488)
T TIGR01052 130 G-GEIYVYKMK 139 (488)
T ss_pred C-CceEEEEEE
Confidence 7 666633333
No 107
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.28 E-value=3.1e-11 Score=151.31 Aligned_cols=402 Identities=21% Similarity=0.255 Sum_probs=275.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 001676 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM-DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503 (1033)
Q Consensus 425 e~~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~-~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l 503 (1033)
..++++..+..++..++..++|..|+|++++++....+. +..+...+.-.+++..+.+..+..+++.-.+.++...|..
T Consensus 374 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~ 453 (786)
T KOG0519|consen 374 RAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTG 453 (786)
T ss_pred hhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCc
Confidence 334445555666777888888999999999999988543 4344445555667777888889999999999999877877
Q ss_pred eeEeEeecHHHHHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHh--ccCCCeE-EEEEEEe
Q 001676 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK--FTEKGHI-FVTVYLV 580 (1033)
Q Consensus 504 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiK--fT~~G~I-~v~v~~~ 580 (1033)
..+...+.+..++.............+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..|+= .+.+...
T Consensus 454 ~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 533 (786)
T KOG0519|consen 454 LGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAE 533 (786)
T ss_pred ccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEec
Confidence 778888999999999999998888888888888888888888999999999999999999999 8877731 2233221
Q ss_pred ecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcc
Q 001676 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (1033)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (1033)
.- .+.+.... +.. . .-|. ...+.....+.+.++|++.|+....++..+..|
T Consensus 534 ~~---~~~vd~~~--------~~~--~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 584 (786)
T KOG0519|consen 534 LL---GISVDVSL--------SLS--L--AFWF--------------LDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLH 584 (786)
T ss_pred cc---Cccccccc--------cch--h--hhhh--------------cccccccchheEEeeeccccccCCCcchhhhhh
Confidence 00 00000000 000 0 0000 001111135789999999999999999888888
Q ss_pred cccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEE-eCCC----ceEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 001676 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-IPNI----GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735 (1033)
Q Consensus 661 ~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S-~~g~----GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1033)
.+....+++...+.+++++.|++..+.++|.+++.- ..+. -+.+.+................ ............
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~ 663 (786)
T KOG0519|consen 585 KSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGN-PEKLAEPRDSKL 663 (786)
T ss_pred hccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCC-cccccCcccccc
Confidence 776655555457889999999999999999998752 1111 0111111100000000000000 000011113445
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 736 ~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
++|.++|+||++++.+.|....+..+|..+..+.++.+|+..+. ....+++++.|.+++..+. ......+|+....
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG---~e~~~~irk~~~~ 739 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDG---YEATREIRKKERW 739 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccch---HHHHHHHHHhhcC
Confidence 78999999999999999999999999999999999999999887 5578999999998877765 3445556654432
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l 862 (1033)
..|.+.+.|+..+ +...+... .|...++.||+....+..++++.+
T Consensus 740 ~~pIvAlTa~~~~-~~~~~c~~-~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 740 HLPIVALTADADP-STEEECLE-VGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCCEEEEecCCcH-HHHHHHHH-hCCceEEcccccHHHHHHHHHHHh
Confidence 2355555444332 22222222 378899999999999998888765
No 108
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.28 E-value=3.1e-11 Score=144.77 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=87.3
Q ss_pred hccCcEEEEEeCCCCCc-eEEecHHHHHHHHHHHHHHHHhccCCCe----EEEEEEEeecccccchhhhhhccccCcCCC
Q 001676 528 QDKGVELAVYISDRVPE-TLIGDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSG 602 (1033)
Q Consensus 528 ~~k~i~l~~~i~~~~p~-~v~gD~~rL~QIL~NLl~NAiKfT~~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~ 602 (1033)
..+.+.+...+..+.+. .+-.|...|.+++.|||+||++|++.++ |.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~----------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE----------------------- 77 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE-----------------------
Confidence 45677777766654432 1223578899999999999999997654 4444321
Q ss_pred CCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCC----CCCCCCcccchH
Q 001676 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS----ISRTHGGTGIGL 678 (1033)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s----~s~~~~GtGLGL 678 (1033)
+...+.|.|+|+|+||++++++++|+||++.+.- .++...|.||||
T Consensus 78 ------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLgl 127 (795)
T PRK14868 78 ------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISA 127 (795)
T ss_pred ------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHH
Confidence 0124679999999999999999999999865421 223344666666
Q ss_pred HHHHHHHHHcCCEEEEEEeCCC-ceEEEEEEEe
Q 001676 679 SISKYLVGRMKGEIGFVSIPNI-GSTFTFTAVF 710 (1033)
Q Consensus 679 sI~k~Lv~~mgG~I~v~S~~g~-GStF~~~lp~ 710 (1033)
++|...+ .+||.|.+.|..+. +..+.+.+..
T Consensus 128 ai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~I 159 (795)
T PRK14868 128 AVLYSQL-TSGKPAKITSRTQGSEEAQYFELII 159 (795)
T ss_pred HHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEE
Confidence 6666665 37888999999754 3333344443
No 109
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.26 E-value=5.2e-11 Score=127.39 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=93.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHH-HHHHhccccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEAT-KIIREMEHNFNNRI 964 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~-~~IR~~e~~~~~~~ 964 (1033)
..++++|||+|..+..++..|...-..+..+.++.+|++.+. +||+|+||+.||++||++++ +.||..
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~-------- 78 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRK-------- 78 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHh--------
Confidence 357999999999999999999843234557789999998752 39999999999999999997 567763
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~--aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.++++||++|+..+. ...++. +|+++|+.|+.+.++|.++|+.....
T Consensus 79 --------------~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 79 --------------NNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred --------------CCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 346899999998763 345555 59999999999999999999865443
No 110
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.26 E-value=7.1e-11 Score=136.17 Aligned_cols=114 Identities=25% Similarity=0.363 Sum_probs=96.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||||||++.++..+..+|... |+.+. .+.++.+|+..+. .+.||+|++|+.||.|||++++++|++.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-~~~~DlVllD~~mp~~dgle~l~~i~~~-------- 74 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-KLNPDVITLDVEMPVMDGLDALEKIMRL-------- 74 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-hhCCCEEEEeCCCCCCChHHHHHHHHHh--------
Confidence 48999999999999999999876 88877 8899999999884 5679999999999999999999999862
Q ss_pred cccccchhhhcccCCCCCcEEEEccCC--cHHHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHhh
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADV--IQATYEECLRSGMDGYVSKPFEA---------EQLYREVSRF 1024 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~--~~~~~~~~l~aG~ddyl~KP~~~---------~~L~~~v~r~ 1024 (1033)
. .+|||++|+.. ......+++++|++||+.||++. ++|...++..
T Consensus 75 --------------~-~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~ 130 (354)
T PRK00742 75 --------------R-PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAA 130 (354)
T ss_pred --------------C-CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHH
Confidence 1 28999999753 34667789999999999999953 5566666554
No 111
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.25 E-value=5.7e-11 Score=126.19 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=89.3
Q ss_pred HHHHHHHHhh---CCCEEEEEcChHHHHHHhCCCCCccEEE---EcCCCCCCCHHHHHHHHHhccccccccccccccchh
Q 001676 899 LKVAAAGLKR---YGAAVVCVERGKKATELLMPPHQFDACF---MDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 899 ~~vl~~~L~~---~g~~v~~a~~g~eAl~~l~~~~~~DlIl---mDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
|..+..+|.. .|+.+.++.++.++++.+. ...||+++ +|+.||+|||++++++|++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~---------------- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-RISFSAVIFSLSAMRSERREGLSCLTELAIK---------------- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-cCCCCEEEeeccccCCCCCCHHHHHHHHHHH----------------
Confidence 5667788865 5777789999999999884 56789998 78899999999999999873
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 973 AYENVSNFHVPILAMTADVIQATYEECL-RSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l-~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+|||++|+..+.....+++ ++|++||+.||++.++|..+|+..+..
T Consensus 66 ------~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 66 ------FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 3468999999987777666655 799999999999999999999986554
No 112
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.24 E-value=8.3e-11 Score=121.96 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+|||+||++..+..+...|...|+.+..+.++.+++..+. .+.||+|++|+.||.++|+++++.|++.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~ii~d~~~~~~~~~~~~~~l~~~---------- 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-GLRFGCVVTDVRMPGIDGIELLRRLKAR---------- 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-cCCCCEEEEeCCCCCCcHHHHHHHHHhc----------
Confidence 57999999999999999999999999999999999998874 5679999999999999999999999862
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|||++|+.........++++|+++|+.||++.++|...+.....
T Consensus 73 ------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 73 ------------GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999999888876543
No 113
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.22 E-value=1.3e-10 Score=137.36 Aligned_cols=117 Identities=28% Similarity=0.428 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
+||||||++..+..+...|...|+.+.++.++.+++..+. .+.||+|++|+.||+++|+++++.|++..
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~l~~~i~~~~---------- 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-REQPDIILLDVMMPGMDGFEVCRRLKSDP---------- 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 7999999999999999999999999999999999999885 56799999999999999999999998631
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
..+.+|||++|+....+...+++++|+++|+.||++.++|..++.+..
T Consensus 73 ----------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 120 (457)
T PRK09581 73 ----------ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred ----------ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 134689999999999999999999999999999999999998887753
No 114
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.22 E-value=1.1e-10 Score=106.93 Aligned_cols=101 Identities=46% Similarity=0.594 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhccC--CCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCC
Q 001676 553 FRQIITNLMGNSIKFTE--KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 630 (1033)
Q Consensus 553 L~QIL~NLl~NAiKfT~--~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1033)
|.+++.+|++||++|.. .+.|.|.+...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~-------------------------------------------------- 30 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD-------------------------------------------------- 30 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec--------------------------------------------------
Confidence 46899999999999997 45555554311
Q ss_pred CCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEE
Q 001676 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (1033)
Q Consensus 631 ~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~l 708 (1033)
...+.|.|.|+|.|+++..++++|.+|.. .......++.|+||++|+++++.|||++.+.+..+.|++|++++
T Consensus 31 ---~~~~~v~i~d~g~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 31 ---GDHLEIRVEDNGPGIPEEDLERIFERFSD--GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred ---CCEEEEEEEeCCCCCCHHHHHHHhhhhhc--CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 12467999999999999999999998821 12223446899999999999999999999999998999998863
No 115
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.22 E-value=7.3e-11 Score=141.79 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=87.9
Q ss_pred EecHHHH---HHHHHHHHHHHHhccCCC----eEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCcccccc
Q 001676 547 IGDPGRF---RQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619 (1033)
Q Consensus 547 ~gD~~rL---~QIL~NLl~NAiKfT~~G----~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 619 (1033)
.|++..+ .+|+.||++||++|+..+ .|.|.+...
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~--------------------------------------- 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL--------------------------------------- 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC---------------------------------------
Confidence 4454455 499999999999998653 455544210
Q ss_pred CCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC--CCCCCcccchHHHHHHHHHHc-CCEEEEEE
Q 001676 620 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRM-KGEIGFVS 696 (1033)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~--s~~~~GtGLGLsI~k~Lv~~m-gG~I~v~S 696 (1033)
+...+.|+|+|+|+|||++.++++|++|+..+.-. ....|+.|+||+++..+++++ ||.+.+.|
T Consensus 69 -------------g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S 135 (659)
T PRK14867 69 -------------GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITT 135 (659)
T ss_pred -------------CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEE
Confidence 11246799999999999999999999998644321 134578999999999999886 56699999
Q ss_pred eCCCceEEEEEEEeCC
Q 001676 697 IPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 697 ~~g~GStF~~~lp~~~ 712 (1033)
.++.|++|++.+|+..
T Consensus 136 ~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 136 STGDGKIHEMEIKMSV 151 (659)
T ss_pred EcCCCEEEEEEEEEEe
Confidence 9999999999998854
No 116
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.21 E-value=6.9e-11 Score=132.04 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=90.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC--CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g--~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+||||||....|++++.+|...| ..|-++.||.+|++++. +..||+|.||+.||.|||++++++|-+.
T Consensus 3 rVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~-~~~PDVi~ld~emp~mdgl~~l~~im~~--------- 72 (350)
T COG2201 3 RVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK-KLKPDVITLDVEMPVMDGLEALRKIMRL--------- 72 (350)
T ss_pred EEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH-hcCCCEEEEecccccccHHHHHHHHhcC---------
Confidence 79999999999999999999998 56678999999999995 5789999999999999999999999752
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCc--HHHHHHHHHcCCCEEEeCCCC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFE 1013 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~--~~~~~~~l~aG~ddyl~KP~~ 1013 (1033)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 --------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 --------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred --------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 3589999887444 466778999999999999985
No 117
>PRK13435 response regulator; Provisional
Probab=99.19 E-value=3.3e-10 Score=112.85 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=97.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCC-CCCHHHHHHHHHhcccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGFEATKIIREMEHNFNNR 963 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP-~mdG~ea~~~IR~~e~~~~~~ 963 (1033)
..+|||+||++.....+...|+..|+.+. ++.++.++++.+. ...||+|++|+.|+ .++|.+..+.+++.
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-RRQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-hcCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999877 7899999999874 45799999999998 59999999988751
Q ss_pred ccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 964 IRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 964 ~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.++|||+++.... ...++.+|+++|+.||++.++|.+.|.++..
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 2589999997643 3567889999999999999999999988754
No 118
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.18 E-value=1.9e-10 Score=114.06 Aligned_cols=98 Identities=14% Similarity=0.297 Sum_probs=76.6
Q ss_pred ecHHHHHHHHHHHHHHHHhccC----CCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCC
Q 001676 548 GDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (1033)
Q Consensus 548 gD~~rL~QIL~NLl~NAiKfT~----~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (1033)
.|...+.+++.|+++||++|+- .|.|.|++...
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~------------------------------------------- 71 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIE------------------------------------------- 71 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe-------------------------------------------
Confidence 3667899999999999999852 35566655321
Q ss_pred CCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceE
Q 001676 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703 (1033)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GSt 703 (1033)
...+.++|.|+|.||++ .+++|+||+..++ ..+|+|+||++++++ .+++.++|.++.||+
T Consensus 72 ----------~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~ 131 (137)
T TIGR01925 72 ----------DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTK 131 (137)
T ss_pred ----------CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeE
Confidence 11468999999999983 6789999986432 235899999998874 579999999999999
Q ss_pred EEEEE
Q 001676 704 FTFTA 708 (1033)
Q Consensus 704 F~~~l 708 (1033)
|+++.
T Consensus 132 v~i~~ 136 (137)
T TIGR01925 132 IIMKK 136 (137)
T ss_pred EEEEe
Confidence 99863
No 119
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.17 E-value=5.1e-10 Score=117.84 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=104.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~l~~~~~~~~~~~l~~~-------- 77 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREK-------- 77 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 48999999999999999999875 5654 46889999999884 4679999999999999999999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|+|++++.........++++|+++|+.||++.++|...+.+....
T Consensus 78 --------------~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 78 --------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999987654
No 120
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-10 Score=117.92 Aligned_cols=112 Identities=28% Similarity=0.375 Sum_probs=95.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
.++|++||++.++..+...|...||.+ .++.++.++..... .+.||+||||+.||.-|-.+.. .+.+
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~~-~~~~---------- 73 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEAL-LLAS---------- 73 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHHH-HHhh----------
Confidence 589999999999999999999999965 47889999998874 6889999999999999933332 2222
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 1022 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1022 (1033)
.+...|||++|++.+.+..+.+.++|+.+||.||++...|+-.+.
T Consensus 74 ------------~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 74 ------------ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred ------------cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 133579999999999999999999999999999999998876653
No 121
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.16 E-value=5.6e-10 Score=116.37 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=103.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-CCEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+||++||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~-------- 74 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQLHQR-------- 74 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHH--------
Confidence 47999999999999999999875 4664 47889999998774 5679999999999999999999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+++|+|++|+.........++++|+++|+.||++.++|...+..+...
T Consensus 75 --------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 75 --------------WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 2357999999999999999999999999999999999999999876543
No 122
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.16 E-value=1.8e-10 Score=143.82 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=101.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
.+||||||++.++..+..+|...|+.|..+.++.+|+..+. ...||+|++|+.||+|+|++++++||..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l~~~---------- 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAVRQT---------- 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHHHhc----------
Confidence 47999999999999999999999999999999999999885 5679999999999999999999999863
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHH--HHHHHHHhh
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAE--QLYREVSRF 1024 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~--~L~~~v~r~ 1024 (1033)
.+.+|||++|+..+.+...+++++|+++|+.||.+.. .+..++.+.
T Consensus 77 ------------~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~ 124 (665)
T PRK13558 77 ------------TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESA 124 (665)
T ss_pred ------------CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHh
Confidence 3468999999999999999999999999999998653 555555543
No 123
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.15 E-value=6.6e-10 Score=116.72 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=102.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhh-CCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+|||+||++..+..+...|+. .++.+. .+.++.+++..+. ...||+|++|+.||.++|+++++.+++.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~~~~~~~~l~~~-------- 77 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-RLDPDVILLDLNMKGMSGLDTLNALRRD-------- 77 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 4799999999999999999975 577775 6889999998874 4679999999999999999999999863
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.+++|++++|..........++++|+++|+.||++.++|...+.+...
T Consensus 78 --------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 78 --------------GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred --------------CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 235789999999888899999999999999999999999999987543
No 124
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.15 E-value=1.2e-09 Score=103.24 Aligned_cols=119 Identities=32% Similarity=0.451 Sum_probs=104.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCC-EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
.+||++|+++.....+...|+..|+ .+.++.++.+++..+. .+.||++++|..+|.++|++..+.+++..
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~~~~-------- 76 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIRADG-------- 76 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHHhCC--------
Confidence 4799999999999999999999998 4778999999998874 46799999999999999999999998631
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
..+++|+++++..........++++|+++|+.||++.++|...+.+.+.
T Consensus 77 ------------~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 77 ------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred ------------CcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 1235799999998888888999999999999999999999999887653
No 125
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.12 E-value=4.1e-09 Score=110.98 Aligned_cols=195 Identities=17% Similarity=0.201 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 001676 84 WWRKVLITWLLFWTL--VSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAID 161 (1033)
Q Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id 161 (1033)
...-+|+..+-++++ .++.++...+...+++.|+...+..--.-.-|..|+|.++..|+.|+....+ .|++.
T Consensus 14 ~~s~~LPali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~~e~------~P~~~ 87 (297)
T COG3452 14 LKSNYLPALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKHWET------EPDMP 87 (297)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhheec------CCCch
Confidence 334444444333333 2333333333444444444444444444444455555555556666665555 56699
Q ss_pred HHHHHHHHHHhhhhCCCceeeeeeeccCcchHHHHHHHhCceeeeecccccCCCCCCCCCCCCcceeeeEeeeCCCceEE
Q 001676 162 QMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVI 241 (1033)
Q Consensus 162 ~~~f~~~t~~~~~~~p~~~~~~~~~~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~ 241 (1033)
|+.|+.-+...+..+.+.+.++=+|.. . .--.||.+.|..++
T Consensus 88 Q~qw~~lA~a~~e~~~~lr~I~vaP~~--------------V------------------------V~~~yPl~~neaa~ 129 (297)
T COG3452 88 QQQWELLARAVFEDYDGLRNIAVAPSL--------------V------------------------VARVYPLPGNEAAI 129 (297)
T ss_pred HHHhHHHHHHHhhccccceeeccCccc--------------E------------------------EEEEeecCCChhhc
Confidence 999998776665555655555422211 0 11278899999999
Q ss_pred eeccCCCcccHHHHHHHHHcCCceeecceeecccCCceEEEEEeeeccCCCCCCChhHHHHhhcceeeeeeeHHHHHHHH
Q 001676 242 SLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 321 (1033)
Q Consensus 242 g~D~~s~~~~~~~i~~Ar~tg~~~~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~~ 321 (1033)
|+|+..+|.-+.++.+||+.++.++|+|+.|+| ++-|++..+|++-.. +. -+.++|+|.++||++.|.+..
T Consensus 130 gLDYrk~pqQ~~s~~~A~~~k~tvvsGpVDL~Q-GgRgfi~rvPlf~gp--~~------~dRFwGvVs~V~dvDqL~~s~ 200 (297)
T COG3452 130 GLDYRKNPQQRQSTSRARRQKETVVSGPVDLVQ-GGRGFIGRVPLFMGP--PG------GDRFWGVVSGVFDVDQLYESV 200 (297)
T ss_pred CcchhcCHHHHHHHHHHHhhcceEEecceeecc-CCceEEEEEeeeeCC--CC------CCccceEEEEEEEHHHHHHHh
Confidence 999999999999999999999999999999997 567999999998642 11 245789999999999998875
Q ss_pred HHhhhccccEE
Q 001676 322 LHQLASKQTIF 332 (1033)
Q Consensus 322 l~~~~~~~~i~ 332 (1033)
. -.+....|.
T Consensus 201 ~-~~sP~~di~ 210 (297)
T COG3452 201 S-LISPGLDIR 210 (297)
T ss_pred c-CCCCCccch
Confidence 2 233334443
No 126
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.11 E-value=8.4e-10 Score=117.51 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=95.5
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCC---EEEEEcChHHHHHHhCCCCCccEEEEcCC--CCCCCHHHHHHHHHhccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHNFNN 962 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~---~v~~a~~g~eAl~~l~~~~~~DlIlmDi~--MP~mdG~ea~~~IR~~e~~~~~ 962 (1033)
.||||||++..+..++.+|...++ .+..+.++.+++..+. ...||+|+||+. ||.+||.+++++|++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~------ 74 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQIINQ------ 74 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHHHHH------
Confidence 489999999999999999987653 4457899999999874 567999999976 8989999999999863
Q ss_pred cccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHhhCCC
Q 001676 963 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDG-YVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 963 ~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~dd-yl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+|||++|+..+..... ++..|.+. |+.|+.+.++|..+++.....
T Consensus 75 ----------------~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 75 ----------------HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred ----------------CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 3468999999987765543 55566665 899999999999999876543
No 127
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.09 E-value=1.1e-08 Score=125.90 Aligned_cols=140 Identities=25% Similarity=0.425 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhhhh--ccCcEEEEEeCCCCCceEEecHHHHHHH---HHHHHHHHHhcc-------------CCCeEE
Q 001676 513 RAILDDVLSLFSGKSQ--DKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFT-------------EKGHIF 574 (1033)
Q Consensus 513 ~~ll~~v~~~~~~~a~--~k~i~l~~~i~~~~p~~v~gD~~rL~QI---L~NLl~NAiKfT-------------~~G~I~ 574 (1033)
..++...-...+..+. .|.++|.+.-.+ ...|+.-|.++ |.+||.||+.|. +.|.|.
T Consensus 393 ~~vf~RfpR~VRdla~~lgK~V~L~ieG~~-----telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 393 EQVFSRFPRMVRDLARKLGKQVELVIEGED-----TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred HHHHhhccHHHHHHHHHhCCeeEEEEecCC-----eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 3444443333344443 455666554221 34588888887 899999999994 236665
Q ss_pred EEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhH-
Q 001676 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ- 653 (1033)
Q Consensus 575 v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~- 653 (1033)
++..- ...++.|+|+|.|.||+.+..
T Consensus 468 L~A~~-----------------------------------------------------~gn~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 468 LSAYH-----------------------------------------------------EGNNIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred EEEEc-----------------------------------------------------CCCeEEEEEeeCCCCCCHHHHH
Confidence 55431 223578999999999998742
Q ss_pred -----------------------hhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 654 -----------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 654 -----------------------~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
+-||.|-|.+....+ .-+|-|.||=+||+-++.+||.|.++|++|+||+|++.||+
T Consensus 495 ~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~Vt-dvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPL 573 (716)
T COG0643 495 EKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQVT-DVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL 573 (716)
T ss_pred HHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhhh-cccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCc
Confidence 348998664433322 45799999999999999999999999999999999999998
Q ss_pred C
Q 001676 711 G 711 (1033)
Q Consensus 711 ~ 711 (1033)
.
T Consensus 574 T 574 (716)
T COG0643 574 T 574 (716)
T ss_pred H
Confidence 5
No 128
>PRK03660 anti-sigma F factor; Provisional
Probab=99.08 E-value=1.1e-09 Score=109.62 Aligned_cols=101 Identities=19% Similarity=0.359 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
|...+.+++.|++.||++|... |.|.|++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-------------------------------------------- 71 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-------------------------------------------- 71 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--------------------------------------------
Confidence 6778999999999999998632 4555554311
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001676 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
...+.++|.|+|.||++ ..+.|+||++.+. ...++|+||+|+++ +.+++.+++.++.||+|
T Consensus 72 ---------~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~ 132 (146)
T PRK03660 72 ---------EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTVMES----FMDEVEVESEPGKGTTV 132 (146)
T ss_pred ---------CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHHHHH----hCCeEEEEecCCCcEEE
Confidence 11478999999999986 6689999986432 12478999999875 45689999999999999
Q ss_pred EEEEEeCC
Q 001676 705 TFTAVFGN 712 (1033)
Q Consensus 705 ~~~lp~~~ 712 (1033)
+++.++..
T Consensus 133 ~i~~~~~~ 140 (146)
T PRK03660 133 RMKKYLKK 140 (146)
T ss_pred EEEEEecc
Confidence 99998854
No 129
>PRK09191 two-component response regulator; Provisional
Probab=99.08 E-value=1.5e-09 Score=119.11 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=98.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCC-CCHHHHHHHHHhccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE-MDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
.+|||+||++..+..+...|+..|+.+. .+.++.+++..+. ...||+|++|+.||+ +||+++++.+++.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-~~~~dlvi~d~~~~~~~~g~e~l~~l~~~-------- 208 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-KTRPGLILADIQLADGSSGIDAVNDILKT-------- 208 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-ccCCCEEEEecCCCCCCCHHHHHHHHHHh--------
Confidence 5799999999999999999999999887 7889999999885 467999999999995 8999999999862
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
. ++|||++|+...... .+...|+++|+.||++.++|...|.+....
T Consensus 209 --------------~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 209 --------------F-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred --------------C-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 2 689999999766543 344567889999999999999999886543
No 130
>PRK10693 response regulator of RpoS; Provisional
Probab=99.01 E-value=1.6e-09 Score=122.29 Aligned_cols=89 Identities=27% Similarity=0.357 Sum_probs=79.0
Q ss_pred EEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHH
Q 001676 915 CVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQA 994 (1033)
Q Consensus 915 ~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~ 994 (1033)
++.++.+|++.+. ...||+|++|+.||+|||++++++||+. .+.+|||++|+....+
T Consensus 2 ~a~~g~~al~~l~-~~~pDlVL~D~~mp~~~Gle~~~~ir~~----------------------~~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLG-GFTPDLIICDLAMPRMNGIEFVEHLRNR----------------------GDQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhc----------------------CCCCcEEEEECCCCHH
Confidence 5789999999885 4679999999999999999999999963 2358999999999999
Q ss_pred HHHHHHHcCCCEEEeCCC-CHHHHHHHHHhhCC
Q 001676 995 TYEECLRSGMDGYVSKPF-EAEQLYREVSRFFP 1026 (1033)
Q Consensus 995 ~~~~~l~aG~ddyl~KP~-~~~~L~~~v~r~~~ 1026 (1033)
...+++++|++||+.||+ +.++|...+.+.+.
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 999999999999999999 58999888877653
No 131
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.99 E-value=2.1e-07 Score=107.80 Aligned_cols=118 Identities=20% Similarity=0.310 Sum_probs=86.9
Q ss_pred HHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcC
Q 001676 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600 (1033)
Q Consensus 521 ~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l 600 (1033)
.........-++.+.....+..+..-..-..-+-+|+.--++||+||++.-++.|++...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~------------------- 308 (365)
T COG4585 248 ALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTD------------------- 308 (365)
T ss_pred HHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcC-------------------
Confidence 3333333444555555443211111123456788999999999999998888887765321
Q ss_pred CCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHH
Q 001676 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSI 680 (1033)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI 680 (1033)
..++++|.|+|.|.+++.. +.|+||.=
T Consensus 309 ----------------------------------~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~ 335 (365)
T COG4585 309 ----------------------------------DELRLEVIDNGVGFDPDKE-------------------GGGFGLLG 335 (365)
T ss_pred ----------------------------------CEEEEEEEECCcCCCcccc-------------------CCCcchhh
Confidence 2478999999999886521 16899999
Q ss_pred HHHHHHHcCCEEEEEEeCCCceEEEEEEEe
Q 001676 681 SKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 681 ~k~Lv~~mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
-|+=|+.+||++.+.|.+|+||++++++|+
T Consensus 336 mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 336 MRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred HHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 999999999999999999999999999984
No 132
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.99 E-value=2.4e-07 Score=101.36 Aligned_cols=189 Identities=13% Similarity=0.245 Sum_probs=137.6
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
.+.+...-+-.||-.-+++|..-+.++++...++..+.....|+.-+.++-+-+..+|..-|-- ...+..+.+.
T Consensus 302 iRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP~------~LDdL~l~qa 375 (497)
T COG3851 302 IRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRPR------QLDDLTLEQA 375 (497)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccccHHHH
Confidence 3445555566788889999999888887765555556666666666666666666666544321 1234567888
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecH---HHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhh
Q 001676 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~---~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
+..++..+. ..++||...++...+.. .-|+ --+.++...+++|-+||.+...|++..+..++
T Consensus 376 i~~l~~Em~--~~ergihcq~~~~~n~~---~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e---------- 440 (497)
T COG3851 376 IRSLLREME--LEERGIHCQLDWRINET---ALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE---------- 440 (497)
T ss_pred HHHHHHHhh--hhhcCeEEEeccccCcc---cCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc----------
Confidence 888888775 45778877776543211 1122 24788999999999999999888887764322
Q ss_pred hccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCC
Q 001676 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~ 672 (1033)
.+.++|+|+|+|+|+.. +
T Consensus 441 -------------------------------------------~l~Lei~DdG~Gl~~~~-------------------~ 458 (497)
T COG3851 441 -------------------------------------------RLMLEIEDDGSGLPPGS-------------------G 458 (497)
T ss_pred -------------------------------------------EEEEEEecCCcCCCCCC-------------------C
Confidence 36799999999999641 3
Q ss_pred cccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 001676 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (1033)
Q Consensus 673 GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp 709 (1033)
-+|.||.=.++=|.++||+++++| ..||...+++|
T Consensus 459 v~G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 459 VQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred ccCcCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 468999999999999999999999 67999999998
No 133
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.98 E-value=6.1e-09 Score=94.11 Aligned_cols=112 Identities=35% Similarity=0.523 Sum_probs=100.0
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccccc
Q 001676 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 890 LIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
|++|+++..+..+...++..|+.+..+.++.+++..+. .+.||++++|..++..+|++..+.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~l~~~------------- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLELLRRIRKR------------- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-hCCCCEEEEecCCCCCchHHHHHHHHHh-------------
Confidence 57899999999999999999999999999999998874 5679999999999999999999999863
Q ss_pred chhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 970 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.+.+|+++++.........+++..|+++|+.||++.++|...+.+.
T Consensus 67 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ---------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ---------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2357999999888788888999999999999999999999988764
No 134
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.90 E-value=5.1e-07 Score=96.90 Aligned_cols=194 Identities=22% Similarity=0.307 Sum_probs=131.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~l 515 (1033)
.|..++.-+.|-++|-|..|.+++.+-.....++ ..+.++..+.-... +.++.+.|--+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~s-la~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQS-LALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHH-HHHHHHHHhcC---------CcceEcHHHH
Confidence 4667888899999999999999988765544443 33343333333322 23344554432 1234677788
Q ss_pred HHHHHHHHHhhhhccCcEEEEEeCCCCCceEEec-HHHHHHHHHHHHHHHHhcc----CCCeEEEEEEEeecccccchhh
Q 001676 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVE 590 (1033)
Q Consensus 516 l~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD-~~rL~QIL~NLl~NAiKfT----~~G~I~v~v~~~~~~~~~i~i~ 590 (1033)
++.+...+.+....+.+.+.....+.+ .+-.| ..-|--|+.-|+.||+||. +.|.|.|+++..+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 887777776654556677776655432 22222 3457889999999999996 35777777653221
Q ss_pred hhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCC
Q 001676 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (1033)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~ 670 (1033)
.....+.|.|+|.|+|.+. ++
T Consensus 157 -------------------------------------------~~~~~l~v~deg~G~~~~~------~~---------- 177 (221)
T COG3920 157 -------------------------------------------GGRFLLTVWDEGGGPPVEA------PL---------- 177 (221)
T ss_pred -------------------------------------------CCeEEEEEEECCCCCCCCC------CC----------
Confidence 0035688999999999752 11
Q ss_pred CCcccchHHHHHHHH-HHcCCEEEEEEeCCCceEEEEEEEeCC
Q 001676 671 HGGTGIGLSISKYLV-GRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 671 ~~GtGLGLsI~k~Lv-~~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
...|+|+.+++.+| ++.||.+...+.. ||+|++++|...
T Consensus 178 -~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 -SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred -CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24699999999999 8999999887765 999999998753
No 135
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.78 E-value=2.1e-06 Score=99.29 Aligned_cols=184 Identities=23% Similarity=0.341 Sum_probs=127.9
Q ss_pred HHhHHhhHHHHHHHHHHHH----HHhc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHH
Q 001676 442 ATVSHEIRTPMNGVLGMLD----MLMD---TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (1033)
Q Consensus 442 a~vSHELRTPLn~I~g~le----lL~~---~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ 514 (1033)
++|+-||---|.-.+.++. +|.. ....++.++.+..+....+.--.-+.++|.--|+ ...+-+|..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 4566677766666666654 3332 1233445666666666665555666666665543 223456778
Q ss_pred HHHHHHHHHHhhhhccCcEEEEEeCCCCCceEEecHH---HHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhh
Q 001676 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG---RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 591 (1033)
Q Consensus 515 ll~~v~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~---rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~ 591 (1033)
-++++++.|+. +.++.+.+++. .|... -|+. .+-||+.-=++||+||+...+|.|+++...
T Consensus 447 AL~~~~~~f~~---qtg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~---------- 510 (574)
T COG3850 447 ALEQMLAEFSN---QTGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND---------- 510 (574)
T ss_pred HHHHHHHHHHh---ccCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC----------
Confidence 88888888765 45666666543 33322 2443 466888899999999999888888875321
Q ss_pred hhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCC
Q 001676 592 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671 (1033)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~ 671 (1033)
..+.+.|+|+|+|||+.. .+
T Consensus 511 -------------------------------------------g~~~~~VeDnG~Gi~~~~-----------e~------ 530 (574)
T COG3850 511 -------------------------------------------GQVTLTVEDNGVGIDEAA-----------EP------ 530 (574)
T ss_pred -------------------------------------------CeEEEEEeeCCcCCCCcc-----------CC------
Confidence 246799999999999761 11
Q ss_pred CcccchHHHHHHHHHHcCCEEEEEEeCCCceEEEEEEE
Q 001676 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (1033)
Q Consensus 672 ~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF~~~lp 709 (1033)
+| =-||.|.+.=++.+||++.+++.+|+||++.+++|
T Consensus 531 ~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 531 SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred CC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 23 56899999999999999999999999999999986
No 136
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.75 E-value=1.2e-07 Score=96.94 Aligned_cols=103 Identities=18% Similarity=0.272 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
|...++.++..++.||++|... |.|.|++...
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~-------------------------------------------- 74 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY-------------------------------------------- 74 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE--------------------------------------------
Confidence 5667889999999999999853 4566655431
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001676 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
...+.|.|+|+|+|++++.....|.||+...+.. ...+.|+||.++++|++. +.+.+ ..|++|
T Consensus 75 ---------~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v 137 (161)
T PRK04069 75 ---------EDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTV 137 (161)
T ss_pred ---------CCEEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEE
Confidence 1257899999999999999999999988654322 234679999999999986 66665 468999
Q ss_pred EEEEEeCC
Q 001676 705 TFTAVFGN 712 (1033)
Q Consensus 705 ~~~lp~~~ 712 (1033)
+++-.+..
T Consensus 138 ~~~k~~~~ 145 (161)
T PRK04069 138 SMTKYINR 145 (161)
T ss_pred EEEEEcCc
Confidence 99876644
No 137
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.74 E-value=4.3e-06 Score=99.81 Aligned_cols=65 Identities=28% Similarity=0.282 Sum_probs=54.9
Q ss_pred eEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCc-ccchHHHHHHHHHHcCCE--EEEEEeCCCceEEEEEEEeC
Q 001676 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG-TGIGLSISKYLVGRMKGE--IGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~G-tGLGLsI~k~Lv~~mgG~--I~v~S~~g~GStF~~~lp~~ 711 (1033)
.+.++|.|+|+||+++....+.+.- ++ .|+||+=+++.++.+-|. +.++|.+++||+..+++|..
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 5789999999999998876654321 12 599999999999999998 58999999999999999864
No 138
>PRK15029 arginine decarboxylase; Provisional
Probab=98.70 E-value=6.1e-08 Score=119.73 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=84.7
Q ss_pred eEEEEeCCHH--------HHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHH----HHHHHHHh
Q 001676 888 KILIVDDNNV--------NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF----EATKIIRE 955 (1033)
Q Consensus 888 ~ILIVDDn~~--------n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~----ea~~~IR~ 955 (1033)
+||||||+.. .++.++..|+..||+|..+.++.+|+..+.....||+|++|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 69999999999999999999999999998543579999999999999998 89999996
Q ss_pred ccccccccccccccchhhhcccCCCCCcEEEEccCCc--HHHHHHHHHcCCCEEEeCCCCHHH
Q 001676 956 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI--QATYEECLRSGMDGYVSKPFEAEQ 1016 (1033)
Q Consensus 956 ~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~--~~~~~~~l~aG~ddyl~KP~~~~~ 1016 (1033)
. ...+|||++|+... ...-...+ --+++|+-+--+..+
T Consensus 82 ~----------------------~~~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 R----------------------QQNVPVFLLGDREKALAAMDRDLL-ELVDEFAWILEDTAD 121 (755)
T ss_pred h----------------------CCCCCEEEEEcCCcccccCCHHHH-HhhheEEEecCCCHH
Confidence 2 23699999999886 22222222 225678777665444
No 139
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.62 E-value=1.3e-07 Score=103.09 Aligned_cols=112 Identities=29% Similarity=0.362 Sum_probs=93.4
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC-CE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g-~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
+|+++||++..+..+..++.... ++ +..+.++.++++.+.. ..+|++|+||+||.|+|+++.++||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-LRPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-cCCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 69999999999999999998422 22 3368899999999854 5899999999999999999999999742
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
+..+|+++|++.. ....+++..+-||+.||++.+.|...+.+.
T Consensus 74 --------------~~~~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 74 --------------PRPAIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred --------------CCCeEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 2468999998754 444566788899999999999999999764
No 140
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.57 E-value=1.6e-05 Score=90.61 Aligned_cols=129 Identities=22% Similarity=0.343 Sum_probs=91.6
Q ss_pred EeecHHHHHHHHHHHHHhhhh--ccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhcc-----CCCeEEEEEEEe
Q 001676 508 VSFNLRAILDDVLSLFSGKSQ--DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-----EKGHIFVTVYLV 580 (1033)
Q Consensus 508 ~~~dL~~ll~~v~~~~~~~a~--~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT-----~~G~I~v~v~~~ 580 (1033)
..+.|.+-++.+-...+-+-. ...+++.+++++.+-.. .=|. -++.-|+.|||||. +.|.|.|+|...
T Consensus 415 ~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~--~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~~ 489 (557)
T COG3275 415 EIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV--QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEKE 489 (557)
T ss_pred eEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhc--cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEEe
Confidence 457788888877665543322 22345555555433210 0111 35677899999996 347787777532
Q ss_pred ecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcc
Q 001676 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (1033)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (1033)
+ ..+++.|+|+|-||+++
T Consensus 490 d-----------------------------------------------------~~l~i~VeDng~li~p~--------- 507 (557)
T COG3275 490 D-----------------------------------------------------ADLRIEVEDNGGLIQPD--------- 507 (557)
T ss_pred C-----------------------------------------------------CeEEEEEecCCCCcCCC---------
Confidence 1 23789999999999986
Q ss_pred cccCCCCCCCCCcccchHHHHHHHHHHcCC---EEEEEEeCCCceEEEEEEEeCC
Q 001676 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKG---EIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 661 ~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG---~I~v~S~~g~GStF~~~lp~~~ 712 (1033)
...|+|+||+.+.+=++.+=| -+.++|.+..||+++|.+|+..
T Consensus 508 ---------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 ---------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred ---------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 124899999999999998888 7999999999999999999854
No 141
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.51 E-value=4.3e-07 Score=76.50 Aligned_cols=64 Identities=44% Similarity=0.760 Sum_probs=57.2
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001676 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (1033)
Q Consensus 437 Ks~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skies 500 (1033)
+.+|++.++|||||||++|.++++++.+...+++..++++.+..+++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4679999999999999999999999887666666688999999999999999999999999775
No 142
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.48 E-value=1.4e-06 Score=88.87 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
+...+.-++..++.||++|+.. |.|.|.+...+
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~------------------------------------------- 75 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYE------------------------------------------- 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeC-------------------------------------------
Confidence 3445888999999999999843 56666654211
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001676 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
..+.|.|+|+|.|++++..+..|.|++..++.. ...+.|+||.|+++|++ ++.+.+ +.|+++
T Consensus 76 ----------~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l 137 (159)
T TIGR01924 76 ----------DRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTV 137 (159)
T ss_pred ----------CEEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEE
Confidence 247899999999999999988898876543322 23467999999999998 677776 467888
Q ss_pred EEEEEeC
Q 001676 705 TFTAVFG 711 (1033)
Q Consensus 705 ~~~lp~~ 711 (1033)
.++..+.
T Consensus 138 ~l~k~~~ 144 (159)
T TIGR01924 138 AMTKYLN 144 (159)
T ss_pred EEEEEEc
Confidence 8876553
No 143
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.38 E-value=0.00015 Score=79.11 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEe---ecHHHHHHHHHHHHH
Q 001676 448 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS---FNLRAILDDVLSLFS 524 (1033)
Q Consensus 448 LRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~---~dL~~ll~~v~~~~~ 524 (1033)
|..-|-+..-.++++...-.++.+ .-...+.+++.+|..-|+++--+|. .+.+.. .-|..-++-.++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH------~LRP~~LDDLGL~aALe~L~~~f~ 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH------DLRPRALDDLGLTAALEALLEDFK 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc------ccChhhhhhhhHHHHHHHHHHHhh
Confidence 445566667777777654322222 1225567777888888888866653 122221 224444555555555
Q ss_pred hhhhccCcEEEEEeCCCCCceEE-ecHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCC
Q 001676 525 GKSQDKGVELAVYISDRVPETLI-GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 603 (1033)
Q Consensus 525 ~~a~~k~i~l~~~i~~~~p~~v~-gD~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~ 603 (1033)
...|+++.+..+. .|..+. --...|.+|...-++|-=+|+..-.|.|...
T Consensus 335 ---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~------------------------- 385 (459)
T COG4564 335 ---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQ------------------------- 385 (459)
T ss_pred ---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEec-------------------------
Confidence 5678888877654 343332 2346788999999999989885544444331
Q ss_pred CcccccCccCccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHH
Q 001676 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683 (1033)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~ 683 (1033)
.....+...|.|+|+|.+.+... ..-.||||--.++
T Consensus 386 ----------------------------~~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrE 421 (459)
T COG4564 386 ----------------------------QMGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRE 421 (459)
T ss_pred ----------------------------cCCcceEEEEecCCCCccchhhc----------------cCccccccccHHH
Confidence 11234789999999998865431 1126999999999
Q ss_pred HHHHcCCEEEEEEeCCCceEEEEEEEeC
Q 001676 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (1033)
Q Consensus 684 Lv~~mgG~I~v~S~~g~GStF~~~lp~~ 711 (1033)
=+...||+..++|.|. ||..++.+|..
T Consensus 422 Rma~~GG~~~v~s~p~-GTel~v~Lp~~ 448 (459)
T COG4564 422 RMAHFGGELEVESSPQ-GTELTVLLPLD 448 (459)
T ss_pred HHHHhCceEEEEecCC-CcEEEEEecch
Confidence 9999999999999998 99999999874
No 144
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.37 E-value=3.7e-05 Score=85.48 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce------eEeEeecHHHHHHHHHHHHHhhhhccCc---EEEEEeCCCC
Q 001676 472 QDYVRTAQASGKALVSLINEVLDQAKVESGKLE------LEAVSFNLRAILDDVLSLFSGKSQDKGV---ELAVYISDRV 542 (1033)
Q Consensus 472 ~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~------l~~~~~dL~~ll~~v~~~~~~~a~~k~i---~l~~~i~~~~ 542 (1033)
+.+++.-..+=-.+.-|+|+=+-+-- +|+-+ .-...+++.++++++.+..+..+..+=+ ++.+.-+...
T Consensus 174 qyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 174 QYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 34455544443334445665444332 34332 1123578999999999888877765543 3333333333
Q ss_pred CceEEecHHHHHHHHHHHHHHHHhccC-----CCe----EEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccC
Q 001676 543 PETLIGDPGRFRQIITNLMGNSIKFTE-----KGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 613 (1033)
Q Consensus 543 p~~v~gD~~rL~QIL~NLl~NAiKfT~-----~G~----I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~ 613 (1033)
...| .=|.-|..++.-|+.||.++|= .|. |.|.|..
T Consensus 252 ~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~---------------------------------- 296 (414)
T KOG0787|consen 252 SFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK---------------------------------- 296 (414)
T ss_pred cCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec----------------------------------
Confidence 2221 3478899999999999999982 233 4333321
Q ss_pred ccccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC------CCCCCcccchHHHHHHHHHH
Q 001676 614 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGR 687 (1033)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~------s~~~~GtGLGLsI~k~Lv~~ 687 (1033)
+...+.|.|+|.|-||+.+..+++|.=-|...+.. ...-.|.|-||.|||...+.
T Consensus 297 -------------------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~y 357 (414)
T KOG0787|consen 297 -------------------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARY 357 (414)
T ss_pred -------------------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHH
Confidence 11236788999999999999999998555433221 22335999999999999999
Q ss_pred cCCEEEEEEeCCCceEEEEEEEe
Q 001676 688 MKGEIGFVSIPNIGSTFTFTAVF 710 (1033)
Q Consensus 688 mgG~I~v~S~~g~GStF~~~lp~ 710 (1033)
.||.+.+.|-.|-||-..+.+-.
T Consensus 358 f~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 358 FGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred hCCCeeEEeeeccccceEEEecc
Confidence 99999999999999999998743
No 145
>PF14501 HATPase_c_5: GHKL domain
Probab=98.28 E-value=1.3e-05 Score=75.20 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=65.1
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
|+.-|..+|.||++||++++.. ..|.+.+...
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~-------------------------------------------- 37 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREE-------------------------------------------- 37 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--------------------------------------------
Confidence 4566889999999999999732 3444444311
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001676 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
...+.|.|+++-.+ + .++++ +++...++.|+||.+++++++.++|.+.++++.+ .|
T Consensus 38 ---------~~~~~i~i~N~~~~---~-~~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f 93 (100)
T PF14501_consen 38 ---------NGFLVIIIENSCEK---E-IEKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IF 93 (100)
T ss_pred ---------CCEEEEEEEECCCC---c-ccccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EE
Confidence 12467889988554 1 12222 1234557899999999999999999999887754 67
Q ss_pred EEEEEe
Q 001676 705 TFTAVF 710 (1033)
Q Consensus 705 ~~~lp~ 710 (1033)
++++-+
T Consensus 94 ~~~i~i 99 (100)
T PF14501_consen 94 TVKIVI 99 (100)
T ss_pred EEEEEE
Confidence 666543
No 146
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.24 E-value=8.5e-06 Score=105.72 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=98.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccc
Q 001676 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNN 962 (1033)
Q Consensus 883 ~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~ 962 (1033)
.+.+++|||+||++..+..+..+|...|+.+..+.++.+ + ....||++++|..||.+++.+..........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-~~~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-PEAHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-ccCCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 356789999999999999999999999999999999888 2 2467999999999999888776655443211
Q ss_pred cccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 963 RIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 963 ~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
....++|+++..........+.+.|+++|+.||+...+|...+....
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 12356888899999999999999999999999999999999987654
No 147
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.07 E-value=1.5e-05 Score=66.35 Aligned_cols=62 Identities=40% Similarity=0.723 Sum_probs=53.2
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001676 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (1033)
Q Consensus 436 aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~LIndlLd~sk 497 (1033)
.+.++++.++|||||||+++.++++.+.+... .+...++++.+..+++++..+++++++++|
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999999998876433 456678889999999999999999999874
No 148
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.01 E-value=4.7e-06 Score=96.61 Aligned_cols=92 Identities=26% Similarity=0.429 Sum_probs=81.3
Q ss_pred CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccC
Q 001676 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD 990 (1033)
Q Consensus 911 ~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~ 990 (1033)
++|.++..|.+|+..+. .+.+|.++.|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~-~~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILL-DHKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHh-cCCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 46677999999999984 68999999999999999999999999731 238999999
Q ss_pred CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 991 VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 991 ~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
.+.+...+.+++|++++++||.+..++...+..+...
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccc
Confidence 9999999999999999999999999999888766543
No 149
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.93 E-value=6.3e-05 Score=85.35 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCC
Q 001676 551 GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 630 (1033)
Q Consensus 551 ~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1033)
..+.+++.|||.||+++.. ..|.|.+.. .
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~------------------------------------------------ 49 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--G------------------------------------------------ 49 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--C------------------------------------------------
Confidence 3578999999999999864 456555421 0
Q ss_pred CCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCC------CCCCCcccchHHHHHHHHHHcCCEEEEEEeC--CCce
Q 001676 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIP--NIGS 702 (1033)
Q Consensus 631 ~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~------s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~--g~GS 702 (1033)
....|+|.|+|.||++++++++|++|++.+... ...+|--|.||+-...+ +.+.+.|.. +.+.
T Consensus 50 ----~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~ 120 (312)
T TIGR00585 50 ----GLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGL 120 (312)
T ss_pred ----CEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcc
Confidence 023599999999999999999999999765432 12345568888644433 368898875 4445
Q ss_pred EEEEE
Q 001676 703 TFTFT 707 (1033)
Q Consensus 703 tF~~~ 707 (1033)
.+.+.
T Consensus 121 ~~~~~ 125 (312)
T TIGR00585 121 AWQAL 125 (312)
T ss_pred eEEEE
Confidence 54443
No 150
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.62 E-value=0.00048 Score=66.92 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1033)
+...+.-++.-++.||++|+.. +.|.|.+..
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~--------------------------------------------- 62 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEV--------------------------------------------- 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE---------------------------------------------
Confidence 4457889999999999999865 345444322
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCceEE
Q 001676 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (1033)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~GStF 704 (1033)
+...+.|+|.|+|.|+++.....--..= .......|+||.|++++++.+ .+ + .+.|++.
T Consensus 63 --------~~~~l~i~v~D~G~~~d~~~~~~~~~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v 121 (125)
T PF13581_consen 63 --------DPDRLRISVRDNGPGFDPEQLPQPDPWE-------PDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTV 121 (125)
T ss_pred --------cCCEEEEEEEECCCCCChhhccCccccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEE
Confidence 1124789999999999987554322110 023356799999999999875 55 4 7889998
Q ss_pred EEE
Q 001676 705 TFT 707 (1033)
Q Consensus 705 ~~~ 707 (1033)
+++
T Consensus 122 ~l~ 124 (125)
T PF13581_consen 122 TLR 124 (125)
T ss_pred EEE
Confidence 875
No 151
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00025 Score=80.73 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1033)
-...|.|++.-|+.||+.+|+..+|.=.+++.-+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~---------------------------------------------- 66 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIE---------------------------------------------- 66 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE----------------------------------------------
Confidence 3456999999999999999976544322222111
Q ss_pred CCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCC-CC-CCCCcccchHHHHHHHHHHcCCE-EEEEEeCCC-ceEE
Q 001676 629 SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS-IS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPNI-GSTF 704 (1033)
Q Consensus 629 ~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s-~s-~~~~GtGLGLsI~k~Lv~~mgG~-I~v~S~~g~-GStF 704 (1033)
..+..++.+.|+|||+|||+++.+++|-.+.-.+.- .. .+.|--|||.+-|=-..++.-|+ +.|.|..+. ++..
T Consensus 67 --~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~ 144 (538)
T COG1389 67 --RIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAY 144 (538)
T ss_pred --ecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceE
Confidence 011235789999999999999999999775432211 11 12345799999998888998887 777776654 7766
Q ss_pred EEEEEeC
Q 001676 705 TFTAVFG 711 (1033)
Q Consensus 705 ~~~lp~~ 711 (1033)
.+.+-..
T Consensus 145 ~~~l~id 151 (538)
T COG1389 145 EYELKID 151 (538)
T ss_pred EEEEEec
Confidence 6666543
No 152
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.72 E-value=0.0072 Score=46.22 Aligned_cols=54 Identities=37% Similarity=0.479 Sum_probs=48.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCC
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP 942 (1033)
+++++||++..+..+...+...|+.+....++.++...+. .+.+|++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6899999999999999999999999999999999988774 45799999998765
No 153
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.62 E-value=0.018 Score=57.84 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHHHHHhccCC-----CeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEK-----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~-----G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (1033)
|-.+++-++.-++.||++|..+ |.|.|.+...+
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~------------------------------------------ 74 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD------------------------------------------ 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC------------------------------------------
Confidence 7788999999999999999865 77877765322
Q ss_pred CCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCCCc
Q 001676 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701 (1033)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g~G 701 (1033)
..+.+.|.|.|+||.+ .++-+.|-+.. ...-..-|+||.+.+++++ ++.+++.++.+
T Consensus 75 -----------~~~~i~i~D~G~~~~~--~~~~~~~~~~~----~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 75 -----------GKLEIRIWDQGPGIED--LEESLGPGDTT----AEGLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred -----------CeEEEEEEeCCCCCCC--HHHhcCCCCCC----CcccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 2378999999988764 34455554221 1111234899999999885 57888665553
No 154
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.60 E-value=0.0096 Score=73.79 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCCCCCCCC
Q 001676 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (1033)
Q Consensus 552 rL~QIL~NLl~NAiKfT~~G~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1033)
++..|+..||.||+.+. ...|.|.+. +.
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~--~~------------------------------------------------- 49 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIE--EG------------------------------------------------- 49 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57789999999999965 455666552 10
Q ss_pred CCceeEEEEEEEcCCCCChhhHhhccCcccccCCCCC------CCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 001676 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698 (1033)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~d~s~s------~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~ 698 (1033)
....|+|.|+|.||++++++.+|.+++..+-..- ...|=-|.||+-...+ +.+.+.|..
T Consensus 50 ---g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 50 ---GLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred ---CeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 1246999999999999999999999876433211 2234456777644443 367777765
No 155
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.40 E-value=0.022 Score=54.32 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=74.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEE-EEcCCCCCCCHHHHHHHHHhccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC-FMDIQMPEMDGFEATKIIREMEHNFNNRIRR 966 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlI-lmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~ 966 (1033)
||||||||..-+.-+..+|.=.|+.+..+...+-..... ....+.+ ++...++ ...+.++.+-+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~--~~~~~~~~v~~g~~~--~~~~~l~~l~~----------- 65 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADW--SSPWEACAVILGSCS--KLAELLKELLK----------- 65 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhh--hcCCcEEEEEecCch--hHHHHHHHHHh-----------
Confidence 699999999999999999999999999888765422222 2345544 4444444 33444455543
Q ss_pred cccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 967 GEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 967 g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
..+++|++.+......... ..+-+-|..|++..+|.+.+++.
T Consensus 66 -----------~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 66 -----------WAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred -----------hCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 2458999999877665111 12667799999999999999875
No 156
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=95.93 E-value=0.053 Score=50.76 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=78.4
Q ss_pred EEEECCchhhHHHHHHHHHHcCc-EEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 741 ALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 741 vlvvd~~~~~~~v~~~~l~~~Gi-~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
++++|+++..+......++..|+ .+..+++..+++..+... .++++++|..... .....++..+++.. ....
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~d~iiid~~~~~---~~~~~~~~~i~~~~--~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--PPDLIIIDLELPD---GDGLELLEQIRQIN--PSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--TESEEEEESSSSS---SBHHHHHHHHHHHT--TTSE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--CceEEEEEeeecc---cccccccccccccc--cccc
Confidence 58999999999999999999999 999999999999988654 4888998866544 22334666666655 3445
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHH
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l 858 (1033)
++++............. ..+...++.||+..+.+...+
T Consensus 74 ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 74 IIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHhh
Confidence 55554433322222222 236778999999998887654
No 157
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.60 E-value=0.011 Score=58.86 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=42.1
Q ss_pred EEEEEEcCCCCChhhHhhccCcccccCCC--CCCCCCcccch--HHHHHHHHHHcCCEEEEEEeCC-CceEEEEEEE
Q 001676 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIG--LSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 709 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~d~s--~s~~~~GtGLG--LsI~k~Lv~~mgG~I~v~S~~g-~GStF~~~lp 709 (1033)
.|.|.|+|.||+.+.+.++|......... .....|--|+| +|+. .++..+.|.|... ...+++|...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 58999999999999999977655433221 12234567788 4433 4678899999864 3445555554
No 158
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=95.22 E-value=0.18 Score=54.68 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=84.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC-
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 817 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 817 (1033)
+++++||+++.........|+..|++|..+.+..+++..+... ++.+++|..+...+ ....+..++.. ....
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~d---G~~~~~~iR~~-~~~~~ 73 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLD---GLELCRRLRAK-KGSGP 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCC---HHHHHHHHHhh-cCCCC
Confidence 3789999999999999999999999999999999999887655 89999987655332 34466777755 3333
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
|.+++.+.+........ -..|...++.||+...+|.+-+...+..
T Consensus 74 PIi~Lta~~~~~d~v~g--l~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 74 PIIVLTARDDEEDRVLG--LEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred cEEEEECCCcHHHHHHH--HhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 55555443222111111 1225678999999999999988888754
No 159
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.07 E-value=0.042 Score=68.16 Aligned_cols=90 Identities=29% Similarity=0.453 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHHHHHhccCCC---eEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1033)
|...+.+++.-||+||+.....| .|.|.++ +
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~--~-------------------------------------------- 67 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH--A-------------------------------------------- 67 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe--C--------------------------------------------
Confidence 67789999999999999875444 4555442 0
Q ss_pred CCCCCCCCceeEEEEEEEcCCCCChhhHhh--------ccCcccccC---CCCCCCCCc-ccchHHHHHHHHHHcCCEEE
Q 001676 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRMKGEIG 693 (1033)
Q Consensus 626 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------IFepF~q~d---~s~s~~~~G-tGLGLsI~k~Lv~~mgG~I~ 693 (1033)
+ -.|+|.|+|.|||.+..+. +|....... .......+| .|.||+.+..+-+. +.
T Consensus 68 -------d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~ 133 (631)
T PRK05559 68 -------D---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LE 133 (631)
T ss_pred -------C---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee----EE
Confidence 0 0489999999999998888 887743221 111112334 79999998888654 45
Q ss_pred EEEeC
Q 001676 694 FVSIP 698 (1033)
Q Consensus 694 v~S~~ 698 (1033)
+++..
T Consensus 134 V~s~r 138 (631)
T PRK05559 134 VEVKR 138 (631)
T ss_pred EEEEe
Confidence 55543
No 160
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=94.20 E-value=0.21 Score=64.10 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=113.5
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+.+++++|+++..+......|+.+|+.+..+++..+++..+.. ..++++++|..+...+ .......++......
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~---G~e~~~~ir~~~~~~ 598 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMT---GLDIARELRERYPRE 598 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhccccC
Confidence 45789999999999999999999999999999999999988753 4578899887654332 233455555543212
Q ss_pred C-ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCC
Q 001676 817 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895 (1033)
Q Consensus 817 ~-~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn 895 (1033)
. +.++++...... ..... -..+...++.||+....+...+.+.+........... ... ... ..++
T Consensus 599 ~~~~ii~~ta~~~~-~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~~~~~~~--~~~-----~~~-----~~~~ 664 (779)
T PRK11091 599 DLPPLVALTANVLK-DKKEY-LDAGMDDVLSKPLSVPALTAMIKKFWDTQDDEESTVT--TEE-----SSK-----ANEA 664 (779)
T ss_pred CCCcEEEEECCchH-hHHHH-HHCCCCEEEECCCCHHHHHHHHHHHhccccccccccc--ccc-----ccc-----cccc
Confidence 2 233333332221 11111 1236678999999999999999888753221110000 000 000 0344
Q ss_pred HHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHh
Q 001676 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIRE 955 (1033)
Q Consensus 896 ~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~ 955 (1033)
..+...+..++..+|.. ...+++..+....+-++-.++..++..|.-++.+...+
T Consensus 665 ~l~~~~l~~~~~~~g~~-----~~~~~l~~~~~~~~~~~~~l~~~l~~~d~~~~~~~ah~ 719 (779)
T PRK11091 665 LLDIPMLEQYVELVGPK-----LITDSLAVFEKMMPGYLSVLDSNLTARDQKGIVEEAHK 719 (779)
T ss_pred ccCHHHHHHHHHhcCHH-----HHHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55566666666665542 13344444422111122233445667777666444433
No 161
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=94.12 E-value=0.29 Score=57.92 Aligned_cols=179 Identities=13% Similarity=0.163 Sum_probs=112.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.++++|||++..+.+....|+..|+.|..+.+..+++..+... .+++++.|..+. +.+. ..++..+++.. ..-|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp--~~~G-l~ll~~i~~~~-~~~p 78 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMP--GMDG-LELLKEIKSRD-PDLP 78 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCC--CCch-HHHHHHHHhhC-CCCC
Confidence 4699999999999999999999999999999999999998876 588888876554 3332 33555565544 2224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCC----------CC-CC-cchh------
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN----------WE-LP-SMSL------ 880 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~----------~~-~~-~~~~------ 880 (1033)
.+++.+.+.-..-.+..+. |...++.||+....+...+.+++.......... .. .. +...
T Consensus 79 VI~~Tg~g~i~~AV~A~k~--GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~ 156 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRL--GAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRL 156 (464)
T ss_pred EEEEeCCCCHHHHHHHHhc--CcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHH
Confidence 4444333222111111222 456789999999999999999886432211000 00 00 0000
Q ss_pred --hccCCCCeEEEEeCCHHHHHHHHHHHhhCCC-------EEEEEcChHHHHHH
Q 001676 881 --RHLLLGRKILIVDDNNVNLKVAAAGLKRYGA-------AVVCVERGKKATEL 925 (1033)
Q Consensus 881 --~~~~~~~~ILIVDDn~~n~~vl~~~L~~~g~-------~v~~a~~g~eAl~~ 925 (1033)
+-..+.-.|||.-..-.=.+++..++.+.+- .+-|+.=..+.++.
T Consensus 157 i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 157 IAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 0012334688888888878888888876532 34455555555543
No 162
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=93.87 E-value=1.2 Score=43.36 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=73.5
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcCCCCCCCH--HHHHHHHHhcccccccccccc
Q 001676 893 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~ea~~~IR~~e~~~~~~~~~g 967 (1033)
|.+..=...+..+|+..||+|.... ..++.++... ...+|+|.+-..|+..-. -++++++|+.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~----------- 77 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLREL----------- 77 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhc-----------
Confidence 6666777888899999999998653 3556666664 568999999887753322 2333444431
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVS 1022 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1022 (1033)
....++ +++-+....++.++..++|+|+|+..=-+.++...-++
T Consensus 78 ----------~~~~i~-i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 78 ----------GAGDIL-VVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ----------CCCCCE-EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 111344 44555566777888999999999999888888766553
No 163
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.43 E-value=2.2 Score=42.55 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=85.2
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcCCCCCCC--HHHHHHHHHhc
Q 001676 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREM 956 (1033)
Q Consensus 886 ~~~ILIV----DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~md--G~ea~~~IR~~ 956 (1033)
+++||+. |.+..-..++..+|+..||+|+... ..++.++... ++.+|+|.+-..|+... --++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4578888 9999999999999999999999754 3455566553 57899999998887432 22444455442
Q ss_pred cccccccccccccchhhhcccCCCCCcEEEEccC-----CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCC
Q 001676 957 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD-----VIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 957 e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~-----~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
....++|++--+- ...++..++.+.|+|......-+.++....++++..
T Consensus 82 ---------------------~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 ---------------------GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred ---------------------CCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1224554433221 135566789999999999999999999999988754
No 164
>PRK14083 HSP90 family protein; Provisional
Probab=93.38 E-value=0.057 Score=66.30 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCChhhHhhccCcccccC-------CCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeC
Q 001676 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG-------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~d-------~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~ 698 (1033)
.++|+|||+||+.++..+.|-..-... .......|.-|+|..=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 589999999999999888763222110 01112346678887644332 3345555544
No 165
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=93.34 E-value=0.098 Score=64.76 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCChhh--------Hhhcc-Cccccc--CCCCCCCCCc-ccchHHHHHHHHHH
Q 001676 638 IVSVEDTGQGIPLEA--------QSRIF-TPFMQV--GPSISRTHGG-TGIGLSISKYLVGR 687 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~--------~~~IF-epF~q~--d~s~s~~~~G-tGLGLsI~k~Lv~~ 687 (1033)
.|+|.|+|.|||.+. .+-+| .+.... +....+..+| .|.||+.+..+-+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 489999999999988 77777 332211 1111122334 79999999988874
No 166
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=93.08 E-value=0.81 Score=59.71 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=81.9
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC-
Q 001676 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG- 815 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~- 815 (1033)
.++++|++|+++..+......|+.+|+++..+.+..+++..+.. ..++++++|..+...+ .......++.....
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~---G~~~~~~ir~~~~~~ 763 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLD---GLETTQLWRDDPNNL 763 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhchhhc
Confidence 45789999999999999999999999999999999999988754 4578899987665433 23344555543211
Q ss_pred -CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 816 -FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 -~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
....++++............ ...+...++.||+....+...+...+.
T Consensus 764 ~~~~pii~lt~~~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 764 DPDCMIVALTANAAPEEIHRC-KKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCCcEEEEeCCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 12223333222221111111 123677899999999999988877654
No 167
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=93.08 E-value=0.18 Score=62.96 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHHHHhccCC---CeEEEEE
Q 001676 549 DPGRFRQIITNLMGNSIKFTEK---GHIFVTV 577 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~---G~I~v~v 577 (1033)
|+.-|.+++.-||.||+.-... ..|.|.+
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 6677999999999999983323 3555554
No 168
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=92.31 E-value=0.25 Score=61.51 Aligned_cols=82 Identities=28% Similarity=0.483 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHHHHhccCCC---eEEEEEEEeecccccchhhhhhccccCcCCCCCcccccCccCccccccCCCCCC
Q 001676 549 DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKfT~~G---~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1033)
|+.-|.+++.-||.||+.-...| .|.|.++-
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------------------------------------------- 67 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---------------------------------------------- 67 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC----------------------------------------------
Confidence 67789999999999999843344 55555420
Q ss_pred CCCCCCCCceeEEEEEEEcCCCCChhhHhh--------ccCccccc---CCCCCCCCCc-ccchHHHHHHHHH
Q 001676 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLVG 686 (1033)
Q Consensus 626 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------IFepF~q~---d~s~s~~~~G-tGLGLsI~k~Lv~ 686 (1033)
+. .|+|.|+|.|||.+..+. ||.-.... +....+..+| -|.||+.+..+-+
T Consensus 68 -------~g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 68 -------DG---SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred -------CC---cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 00 489999999999974332 44332111 1111222233 6999998888776
No 169
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=92.20 E-value=0.78 Score=60.25 Aligned_cols=121 Identities=14% Similarity=0.237 Sum_probs=84.3
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+.+++++|+++..+...+..|+.+|+.|..+.+..+++..+.. ..++++++|..+...+ .......++......
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~---g~~~~~~ir~~~~~~ 775 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGD---GVTLLQQLRAIYGAK 775 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCC---HHHHHHHHHhCcccc
Confidence 34589999999999999999999999999999999999998865 5689999987664432 334555565543322
Q ss_pred C-ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 817 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~-~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
. ..++++............ -..+...++.||+....+...+...+.
T Consensus 776 ~~~pii~lta~~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 776 NEVKFIAFSAHVFNEDVAQY-LAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCCeEEEEECCCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 2 233333222221111111 123677899999999999999988774
No 170
>PLN03029 type-a response regulator protein; Provisional
Probab=92.18 E-value=1 Score=48.54 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCC------------------ccceEEEeeccccccC
Q 001676 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS------------------KIINMILVEQEVWEKD 798 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~------------------~~~~~~~~d~~~~~~~ 798 (1033)
...++++||+++..+......|+.+|+++..+.+..+++..+.... ..++++++|..+...+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3578999999999999999999999999999999999988764321 2467888887654432
Q ss_pred ccchHHHHHHHhhcCCCCCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHH
Q 001676 799 TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (1033)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~ 860 (1033)
....+..++.........++++............. ..+...++.||+....+......
T Consensus 87 ---G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al-~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 87 ---GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCL-EEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred ---HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHH-HhCchheEECCCCHHHHHHHHHH
Confidence 23455555544322222233333222111111111 12566899999998877655443
No 171
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=91.15 E-value=2.6 Score=40.20 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=76.0
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHH-HHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL-QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~-~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
.+.+++++|+++..+......++.+|..+..+.+.. +++..+.... .++.+++|..+...+ ...+...+++. ..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~---G~~~~~~l~~~-~~ 78 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMD---GIELLRRLRAR-GP 78 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCC---HHHHHHHHHhC-CC
Confidence 467899999999999999999999999999999995 8988876542 467788887766333 34455566654 12
Q ss_pred CCceEEEEeccCCccc-cCcCCCCCCCCceeccCCchHH-HHHHHHHH
Q 001676 816 FQSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLRSSM-LAASLQRA 861 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~-~~~~~~~~~~~~~~~kPl~~s~-l~~~l~~~ 861 (1033)
..| ++++ ++..... ..... ..+...++.||+.... +...+.+.
T Consensus 79 ~~p-vv~~-t~~~~~~~~~~~~-~~g~~~~l~kP~~~~~~l~~~i~~~ 123 (130)
T COG0784 79 NIP-VILL-TAYADEADRERAL-AAGADDYLTKPIFLEEELLAALRRL 123 (130)
T ss_pred CCC-EEEE-EcCcCHHHHHHHH-HcCCCeEEcCCCCcHHHHHHHHHHH
Confidence 224 3333 3322221 11111 1245568999976655 55555543
No 172
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=90.96 E-value=1.5 Score=57.41 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=83.1
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 736 ~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+.++++||+++..+......|+.+|+.|..+.+..+++..+.. ..++++++|..+...+ .......+++...
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~md---G~el~~~ir~~~~- 872 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMD---GYRLTQRLRQLGL- 872 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCC---HHHHHHHHHhcCC-
Confidence 357899999999999999999999999999999999999988754 4588899988765433 3334555554322
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l 862 (1033)
..|.+.+.+.... ...... ...|...++.||+....+...+....
T Consensus 873 ~~pII~lTa~~~~-~~~~~~-~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 873 TLPVIGVTANALA-EEKQRC-LEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred CCCEEEEECCCCH-HHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 1243333332221 111111 12367789999999999988887654
No 173
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=90.83 E-value=0.97 Score=43.54 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=71.4
Q ss_pred HHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCC--CCHHHHHHHHHhccccccccccccccchhhhccc
Q 001676 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGFEATKIIREMEHNFNNRIRRGEVSIEAYENV 977 (1033)
Q Consensus 900 ~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~--mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~ 977 (1033)
..+...|++.|++|+.+.+..+++..+.....++.|++|.. ++ ....+++++||+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--------------------- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER--------------------- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh---------------------
Confidence 45677888899999999999999999976678899999986 21 1234677788763
Q ss_pred CCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHH
Q 001676 978 SNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQL 1017 (1033)
Q Consensus 978 ~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L 1017 (1033)
+..+||.+++.....+..-...-.-+++|+-..-+-.++
T Consensus 65 -~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 65 -NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp -STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred -CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 347999999987766666666667788999887665544
No 174
>PRK05218 heat shock protein 90; Provisional
Probab=90.65 E-value=0.8 Score=56.86 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCChhhHhhccCcccccC------------CCCCCCCCcccchHHHHHHHHHHcCCEEEEEEeCC
Q 001676 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG------------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~d------------~s~s~~~~GtGLGLsI~k~Lv~~mgG~I~v~S~~g 699 (1033)
.|+|+|||+||+.+++..-|...-+.+ .+.....|-.|+|+.= +=+.+-++.|.|...
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S----~f~va~~v~V~Sr~~ 143 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS----AFMVADKVTVITRSA 143 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh----hhhccCEEEEEEcCC
Confidence 489999999999999888764433211 0112234567888852 223356789988763
No 175
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=90.26 E-value=0.23 Score=62.02 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCChhhHhhcc
Q 001676 638 IVSVEDTGQGIPLEAQSRIF 657 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IF 657 (1033)
.+.|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 58999999999998866544
No 176
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=89.82 E-value=23 Score=40.94 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=63.4
Q ss_pred CcEEEEECCchhhHHHHHHHHHHc-CcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~-Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+++++|+++..+......+... |+.+. .+.+..+++..+.. ..++.+++|..+...+ ...++..++....
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~d---gle~l~~i~~~~~- 76 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMD---GLDALEKIMRLRP- 76 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCC---hHHHHHHHHHhCC-
Confidence 358999999999998888888876 88876 78899998877643 3467888876654332 2234455544332
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCc
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 850 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~ 850 (1033)
.+.+++..............-..+...++.||+.
T Consensus 77 -~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 -TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred -CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 3333332211111010000111245678999984
No 177
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.60 E-value=0.74 Score=45.28 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEEee
Q 001676 553 FRQIITNLMGNSIKFTEKGHIFVTVYLVE 581 (1033)
Q Consensus 553 L~QIL~NLl~NAiKfT~~G~I~v~v~~~~ 581 (1033)
+.-+...||.||+||...|.|.|..++..
T Consensus 64 vgYl~NELiENAVKfra~geIvieasl~s 92 (184)
T COG5381 64 VGYLANELIENAVKFRATGEIVIEASLYS 92 (184)
T ss_pred HHHHHHHHHHhhhcccCCCcEEEEEEecc
Confidence 33467789999999999999999887643
No 178
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=89.25 E-value=5.3 Score=51.78 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=79.3
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
++.+++++|+++.........+..+|+.+..+.+..+++..+......+++++++ .. . .........++... .
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll~--~~--~-~~g~~l~~~l~~~~--~ 768 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLVD--DR--L-LDEEQAAAALHAAA--P 768 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEEC--CC--C-CCHHHHHHHHHhhC--C
Confidence 5678999999999999999999999999999999999999887655567888772 11 1 11223344444322 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
...++++............. ..+ ..++.||+....+...+...+..
T Consensus 769 ~ipIIvls~~~~~~~~~~~~-~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 769 TLPIILGGNSKTMALSPDLL-ASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred CCCEEEEeCCCchhhhhhHh-hcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 22233333322222221111 224 67899999999999999888753
No 179
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=88.95 E-value=1.9 Score=56.23 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=81.7
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+.+++++|+++..+......++.+|+.|..+.+..+++..+.. ...++++++|..+...+ ....+..++... ..
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~---G~~~~~~lr~~~-~~ 754 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYD---GITLARQLAQQY-PS 754 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCC---HHHHHHHHHhhC-CC
Confidence 46789999999999999999999999999999999999987643 24579999988765433 223444555422 11
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.|.+++.+.. ......... ..+...++.||+....+...+...+.
T Consensus 755 ~~ii~~t~~~-~~~~~~~~~-~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 755 LVLIGFSAHV-IDETLRQRT-SSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCEEEEeCCC-chhhHHHHH-hcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 2333333222 111111111 12455789999999999999988774
No 180
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.82 E-value=3.1 Score=39.94 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=62.6
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcCCCCCC--CHHHHHHHHHhcccccccccccc
Q 001676 893 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
|.+..-..++..+|+..||+|.... ..++.++.+. ..+||+|.+-..+... +..++++.+|+.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~----------- 77 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEA----------- 77 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHc-----------
Confidence 6666777899999999999997643 3445556553 5689999998875443 334555666552
Q ss_pred ccchhhhcccCCC-CCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001676 968 EVSIEAYENVSNF-HVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 968 ~~~~~~~~~~~~~-~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
.+ .++| ++-+.......+.+.+.|+|.|+..
T Consensus 78 -----------~~~~~~i-~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 78 -----------GLDDIPV-LVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred -----------CCCCCeE-EEECCCCChhHHHHHHcCCeEEECC
Confidence 12 3444 4555555555567889999888764
No 181
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=87.85 E-value=5.7 Score=41.57 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=76.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|......+ .......++........
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~---g~~~~~~l~~~~~~~~~ 77 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTS---GIELCRRLRRRPETRAI 77 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCc---HHHHHHHHHccccCCCC
Confidence 578999999999988888999999999989999888877654 3468888886654322 22344555443222222
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++............ -..+...++.||.....+...+...+.
T Consensus 78 ~ii~ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 78 PIIMLTARGEEEDRVRG-LETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred CEEEEecCCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 33333322111111111 112556789999999999888887764
No 182
>PTZ00130 heat shock protein 90; Provisional
Probab=87.71 E-value=0.71 Score=58.06 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCChhhHhhccCc--------ccc---cCCCCCCCCCcccchHHHHHHH
Q 001676 638 IVSVEDTGQGIPLEAQSRIFTP--------FMQ---VGPSISRTHGGTGIGLSISKYL 684 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFep--------F~q---~d~s~s~~~~GtGLGLsI~k~L 684 (1033)
.++|+|||+||+.+++..-+-. |.+ .......-.|-.|+|++=|-.+
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmV 193 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 193 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeee
Confidence 5789999999999986543311 211 0011122456688998766443
No 183
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=87.26 E-value=5.7 Score=42.02 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=76.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++++++|......+ ....+..++........
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGS---GIQFIKHLKRESMTRDI 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhccccCCC
Confidence 478999999999988889999999999999999998887653 4568888876554322 23344555543221222
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.+++++............ ..+...++.||+....+...+...+.
T Consensus 78 pvi~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 78 PVVMLTARGEEEDRVRGL-ETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CEEEEECCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 333333222111111111 12566889999999999888877664
No 184
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=87.23 E-value=4.1 Score=39.02 Aligned_cols=116 Identities=17% Similarity=0.297 Sum_probs=81.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHH--HHHhccccc
Q 001676 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATK--IIREMEHNF 960 (1033)
Q Consensus 883 ~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~--~IR~~e~~~ 960 (1033)
.+.||+++.||.|.........+|..-|.+|+.-..- ..+ .++.||++++.+-.+--.-...-. -.|..
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al---- 78 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SAL-PPAHYDMMLLGVAVTFRENLTMQHERLAKAL---- 78 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecccc----ccc-ChhhhceeeecccccccCCchHHHHHHHHHH----
Confidence 4678999999999999999999999999999875433 333 456799999998776544333221 11111
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHhhC
Q 001676 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYR-EVSRFF 1025 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~-~v~r~~ 1025 (1033)
+..+--|+++-.. .....++..+-|+-+.+.||++...|.. .+..+-
T Consensus 79 -----------------~mtd~vilalPs~-~qv~AeqLkQ~g~~~CllKPls~~rLlptllae~~ 126 (140)
T COG4999 79 -----------------SMTDFVILALPSH-AQVNAEQLKQDGAGACLLKPLSSTRLLPTLLAEFC 126 (140)
T ss_pred -----------------hhhcceEEecCcH-HHHhHHHHhhcchHhHhhCcchhhhhHHHHHHHhh
Confidence 1113346666544 3456678889999999999999999987 555553
No 185
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=86.92 E-value=2.9 Score=50.10 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=92.8
Q ss_pred EEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceE
Q 001676 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820 (1033)
Q Consensus 741 vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1033)
++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|..+...+ ....+..++.... ...+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~---g~~ll~~l~~~~~--~~~v 73 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGED---GLDLLPQIKKRHP--QLPV 73 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHHhCC--CCeE
Confidence 4789999998888889999999999999999999887654 3578888887654432 2234444544221 2233
Q ss_pred EEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcCCCCCCCCCCCCCcchhhccCCCCeEEEEeCCHHHHH
Q 001676 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900 (1033)
Q Consensus 821 ~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVDDn~~n~~ 900 (1033)
+++............. ..+...++.||+..+.+...+...+......... . ......+....++.+++.+++
T Consensus 74 Ivlt~~~~~~~~~~a~-~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~--~-----~~~~~~~~~~~lig~s~~~~~ 145 (463)
T TIGR01818 74 IVMTAHSDLDTAVAAY-QRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL--P-----ADAGEAEDSAELIGEAPAMQE 145 (463)
T ss_pred EEEeCCCCHHHHHHHH-HcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh--h-----hhhhccccccceeecCHHHHH
Confidence 3333222111111111 1256678999999998888887665422110000 0 000001122457888998888
Q ss_pred HHHHHHhhCC
Q 001676 901 VAAAGLKRYG 910 (1033)
Q Consensus 901 vl~~~L~~~g 910 (1033)
++..+.+..+
T Consensus 146 v~~~i~~~a~ 155 (463)
T TIGR01818 146 VFRAIGRLSR 155 (463)
T ss_pred HHHHHHHHhC
Confidence 8877765433
No 186
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=86.85 E-value=8.8 Score=37.95 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=72.7
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---cChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccccc
Q 001676 893 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
|-+..-..++..+|+..||+|+-. .+.++.++... ++.+|+|.+--.|... .+.++.+.+.-++
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~-e~~adii~iSsl~~~~--~~~~~~~~~~L~~---------- 79 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAV-EADVHVVGVSSLAGGH--LTLVPALRKELDK---------- 79 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCchhhh--HHHHHHHHHHHHh----------
Confidence 445555678899999999999864 35677777774 5689999886655221 2333333321100
Q ss_pred chhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 970 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.....++|+ +-+....++..+..++|+|+|+..=-+..+....+.+-
T Consensus 80 -------~g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 80 -------LGRPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKK 126 (132)
T ss_pred -------cCCCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 011134444 45445667788899999999999888888888777653
No 187
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=86.65 E-value=19 Score=41.28 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=68.3
Q ss_pred cEEEEECCchhhHHHHHHHH-HHcCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHI-QRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l-~~~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
++++++|+++..+......+ +..|+.+. .+++..+++..+.. ..++.+++|..+...+ ....+..++....
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~---G~e~l~~l~~~~~-- 73 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMD---GVEATRRIMAERP-- 73 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCC---HHHHHHHHHHHCC--
Confidence 37899999999888888888 57788875 68899999888754 4578888886654332 2234444443211
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCC---------chHHHHHHHHHHh
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPL---------RSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl---------~~s~l~~~l~~~l 862 (1033)
.+.+++..............-..+...++.||. ....+...+....
T Consensus 74 ~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 74 CPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred CcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 233333322111111000011125567899998 3445555555444
No 188
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=86.38 E-value=6.4 Score=41.57 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=75.6
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++.........+...|+.+..+.+..+++..+.. .++.+++|......+ ....+..++.... .+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~---g~~~~~~l~~~~~--~~- 73 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKN---GIDTLKELRQTHQ--TP- 73 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCc---HHHHHHHHHhcCC--Cc-
Confidence 68999999999998999999999999999999998887642 478888886654322 2334455554322 23
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
++++............ -..+...++.||+....+...+...+.
T Consensus 74 ii~lt~~~~~~~~~~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 74 VIMLTARGSELDRVLG-LELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred EEEEECCCCHHHHHHH-HHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 3333322111111111 122566899999999999888887764
No 189
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=86.19 E-value=3.7 Score=46.83 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=58.8
Q ss_pred CCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEE-c
Q 001676 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAM-T 988 (1033)
Q Consensus 910 g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIal-T 988 (1033)
|.+++.+.+..++-..+ ..-.+|++|..| . ..-++..- ..+..++++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----~--~~~~~~~~---------------------p~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW---ARAPLVLVDADM-----A--EACAAAGL---------------------PRRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhcc---ccCCeEEECchh-----h--hHHHhccC---------------------CCCCCEEEEeC
Confidence 55677777777665554 246899999754 1 12222211 112335544 4
Q ss_pred cCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 989 ADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 989 a~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
...+.+....++++|+.||+.+|++.++|.+.+.+..
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 4557889999999999999999999999999999874
No 190
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=85.75 E-value=3.5 Score=46.92 Aligned_cols=115 Identities=18% Similarity=0.281 Sum_probs=78.6
Q ss_pred CCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 737 ~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.-.++++|||.+......+..|+..|+.+..+.++..++...... +++.++.|..+..++ ...++..++......
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~md---g~ev~~~lk~~~p~t 87 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMD---GAEVLNKLKAMSPST 87 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCcc---HHHHHHHHHhcCCcc
Confidence 346899999999999999999999999999999999888776443 388888887654443 445777777743333
Q ss_pred C--ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHH
Q 001676 817 Q--SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (1033)
Q Consensus 817 ~--~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l 858 (1033)
. |.+++.+-+-++.... ... .++..++.||++...+....
T Consensus 88 ~~ip~i~lT~~~d~~~~~~-~~~-~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 88 RRIPVILLTAYADSEDRQR-ALE-AGADDYLSKPISPKELVARV 129 (360)
T ss_pred cccceEEEeecCChHHHHH-HHH-hhHHHHhcCCCCHHHHHHHH
Confidence 3 4444433332222221 112 46778999999977665443
No 191
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=85.54 E-value=0.93 Score=56.11 Aligned_cols=48 Identities=38% Similarity=0.616 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCChhhHh--------hccCccccc---CCCCCCCCCc-ccchHHHHHHHH
Q 001676 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLV 685 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---d~s~s~~~~G-tGLGLsI~k~Lv 685 (1033)
.|+|.|+|.|||.+..+ -+|...... +....+..+| -|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 58999999999976533 233333211 1111122233 699999888774
No 192
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=85.39 E-value=2.8 Score=52.55 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=66.5
Q ss_pred eEEEEeCCH-HH-----HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccc
Q 001676 888 KILIVDDNN-VN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 888 ~ILIVDDn~-~n-----~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~ 961 (1033)
+|+|||++- .+ .+.+...|++.|++|..+.+..+++.........+.|++|.+-. ..++++.||+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 73 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQL----- 73 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHh-----
Confidence 467776662 22 45677788889999999999999999887666789999995432 24577888863
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001676 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
+..+||+++.............-.-.++|+-.
T Consensus 74 -----------------~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (713)
T PRK15399 74 -----------------NEYLPLYAFINTHSTMDVSVQDMRMALWFFEY 105 (713)
T ss_pred -----------------CCCCCEEEEcCccccccCChhHhhhcceeeee
Confidence 34699999887543333222222334555553
No 193
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=84.96 E-value=9.6 Score=40.66 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=77.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
..+++++|+++..+......+...|..+..+.+..+++..+.. ..++++++|......+ ....+..++... ...
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~-~~~ 78 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGED---GLSICRRLRSQN-NPT 78 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC-CCC
Confidence 4579999999999999999999999999999999888877644 4567888876554322 233444554422 122
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
|.++ +............ -..+...++.||+....+.+.+...+..
T Consensus 79 pii~-ls~~~~~~~~~~~-l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 79 PIIM-LTAKGEEVDRIVG-LEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred CEEE-EECCCcHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 3333 3322111111111 1225668899999999999888877753
No 194
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=84.41 E-value=7.4 Score=40.59 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=75.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.-|.+|||+..-+......+...|+++....+..+.+.... ......++.|-.++.. ....+...+...+.. -|
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--~~~pGclllDvrMPg~---sGlelq~~L~~~~~~-~P 78 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--LDRPGCLLLDVRMPGM---SGLELQDRLAERGIR-LP 78 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--CCCCCeEEEecCCCCC---chHHHHHHHHhcCCC-CC
Confidence 35789999999999999999999999999999998887621 1223344555443322 223344445443321 25
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
.+++...+.-+..-...+. |...++.||++.+.+.+++++++..
T Consensus 79 VIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 5555433222222222222 4557899999999999999998865
No 195
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=84.09 E-value=22 Score=37.29 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=75.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++.........++..|..+..+.+..+++..+.. ..++.+++|......+ ....+..++... ...|
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~l~~~lr~~~-~~~p 74 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDED---GLSLIRRWRSND-VSLP 74 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC-CCCC
Confidence 368999999998888888999999999999999999877643 3467888876543321 223444454422 1224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
.+++. ........... -..+...++.||+....+...+...+..
T Consensus 75 ii~ls-~~~~~~~~~~~-l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 75 ILVLT-ARESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEEEE-cCCCHHHHHHH-HHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 44333 22111111111 1125667899999999998888877653
No 196
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=84.03 E-value=1.3 Score=55.21 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCChhhHhhccCcccccC
Q 001676 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG 664 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~d 664 (1033)
.|.|.|||+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 489999999999999999999997643
No 197
>PRK11173 two-component response regulator; Provisional
Probab=84.00 E-value=9.5 Score=40.75 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=76.4
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........++..|..+..+.+..+++..+.. ..++++++|...... ........++.. ...|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~---~g~~~~~~lr~~--~~~p 76 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPGK---NGLLLARELREQ--ANVA 76 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCC---CHHHHHHHHhcC--CCCC
Confidence 479999999999998999999999999999999999887654 357888887665332 223344455542 1224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++ +............ -..+...++.||+....+...+...+.
T Consensus 77 ii~-lt~~~~~~~~~~~-~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 77 LMF-LTGRDNEVDKILG-LEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred EEE-EECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 333 3322211111111 122566899999999988877776664
No 198
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=83.69 E-value=11 Score=39.81 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=75.2
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++..+......+...|..+..+.+..+++..+.. ..++.+++|......+ ....+..++.... ..|
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~---g~~~~~~lr~~~~-~~p 74 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVN---GWDIVRMLRSANK-GMP 74 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCC
Confidence 368999999999888888999999999999999888876543 3467888876554322 2234445544321 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++ +............. ..+...++.||+....+...+...+.
T Consensus 75 ii~-ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 75 ILL-LTALGTIEHRVKGL-ELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred EEE-EEcCCCHHHHHHHH-hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 333 32221111111111 12566799999999999888887764
No 199
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=82.57 E-value=15 Score=38.30 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=75.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|......+ ...++..++... ...
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~i~~~~--~~~ 73 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD---GRDILREWREKG--QRE 73 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcC--CCC
Confidence 368999999999998889999999999999998888876643 3468888886654321 223445554421 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++............ -..+...++.||.....+...+...+.
T Consensus 74 ~ii~lt~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 74 PVLILTARDALAERVEG-LRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred cEEEEECCCCHHHHHHH-HhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 33333322211111111 112556789999999988888877664
No 200
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=81.14 E-value=4.7 Score=50.62 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=57.6
Q ss_pred eEEEEeCC-HHH-----HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccc
Q 001676 888 KILIVDDN-NVN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 888 ~ILIVDDn-~~n-----~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~ 961 (1033)
+||||+++ ..+ .+.+...|++.|++|..+.+..+++.........+.|+.|.+- -..++++.||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----- 73 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKM----- 73 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHh-----
Confidence 35666555 222 4567778889999999999999999988766678899999532 124477777763
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCc
Q 001676 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVI 992 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~ 992 (1033)
+..+||+++.....
T Consensus 74 -----------------~~~~Pv~~~~~~~~ 87 (714)
T PRK15400 74 -----------------NENLPLYAFANTYS 87 (714)
T ss_pred -----------------CCCCCEEEEccccc
Confidence 34699999887543
No 201
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=81.06 E-value=35 Score=35.73 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=74.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++..+......++..|..+..+.+..+++..... ..++.+++|......+ ....+..++.. ...|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~--~~~p 74 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQW--SAIP 74 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHcC--CCCC
Confidence 368999999999998889999999999999998888776543 3468888876554322 22344455432 1224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.+++... ........ .-..+...++.||+....+...+...+.
T Consensus 75 vi~lt~~-~~~~~~~~-~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 75 VIVLSAR-SEESDKIA-ALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred EEEEECC-CCHHHHHH-HHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3333221 11111111 1122556799999999999888877664
No 202
>CHL00148 orf27 Ycf27; Reviewed
Probab=80.94 E-value=17 Score=38.54 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=75.8
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
.++++++|+++.........+...|+.+..+.+..+++..+.. ..++++++|....... ....+..++.. ...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~--~~~ 78 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLD---GYGVCQEIRKE--SDV 78 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCC
Confidence 4689999999999998889999999999988898888876643 3467888876554322 23344445442 122
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
+.++ +............. ..+...++.||+....+...+...+.
T Consensus 79 ~ii~-ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 79 PIIM-LTALGDVSDRITGL-ELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred cEEE-EECCCCHHhHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 4333 33221111111111 12456789999999999888877664
No 203
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=80.79 E-value=17 Score=38.10 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=74.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........++..|..+..+.+..+++..+.. ..++.+++|......+ ...++..++... ..|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~~ 75 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGED---GLMLTRELRSRS--TVG 75 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhCC--CCC
Confidence 478999999998888888999999999999999998877654 3478888876543321 233445555421 224
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.+ ++............ -..+...++.||+....+...+...+.
T Consensus 76 ii-~l~~~~~~~~~~~~-l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 76 II-LVTGRTDSIDRIVG-LEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred EE-EEECCCcHHHHHHH-HHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 33 33322211111111 122566789999999988877776553
No 204
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=80.43 E-value=15 Score=38.36 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=75.5
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++.........++..|..+..+.+..+++..+.. ..++.+++|......+ ....+..++... ..|
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~--~~~ 73 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD---GWQILQTLRTAK--QTP 73 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCC---HHHHHHHHHcCC--CCC
Confidence 368999999999988888999999999999999998877643 4578888876554322 223444444321 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.+ ++............ -..+...++.||.....+...+...+.
T Consensus 74 ii-~ls~~~~~~~~~~a-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 74 VI-CLTARDSVDDRVRG-LDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred EE-EEECCCCHHHHHHH-HhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 33 33322111111111 122566789999999999888887764
No 205
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=80.34 E-value=21 Score=37.39 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=75.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|....... ....+..++... ...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~~ 76 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDIS---GFELCRQLLAFH--PAL 76 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CCC
Confidence 479999999998888888899999999888888888876643 3467888876553322 233445555432 122
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
.++++............ -..+...++.||.....+...+...+..
T Consensus 77 ~ii~ls~~~~~~~~~~a-~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 77 PVIFLTARSDEVDRLVG-LEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred CEEEEEcCCcHHHHHHH-hhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 33333322111111111 1225667999999999998888776643
No 206
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=80.26 E-value=13 Score=38.78 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=74.7
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++++|+++..+......+...|+.+..+.+..+++..+.. ..++.+++|......+ ...++..++.... ..|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~~~-~~p 74 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDED---GLHLLRRWRQKKY-TLP 74 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCc
Confidence 368999999999998899999999999999999888877654 3467888876653322 2234444443321 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++ +............ -..+...++.||+....+...+...+.
T Consensus 75 ii~-ls~~~~~~~~~~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 75 VLI-LTARDTLEDRVAG-LDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred EEE-EECCCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 333 3222111111111 122556789999999999888877664
No 207
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=80.10 E-value=16 Score=38.95 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=75.5
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++..+......++..|+.+..+.+..+++..+.. ..++++++|......+ ...+...++... ..|.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~~~~~ir~~~--~~pi 75 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKD---GMTICRDLRPKW--QGPI 75 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCCE
Confidence 68999999999999999999999999999999988877654 3467888876554322 233444554421 1243
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
++ +............ -..+...++.||+....+...+...+..
T Consensus 76 i~-l~~~~~~~~~~~~-~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 76 VL-LTSLDSDMNHILA-LEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EE-EECCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 33 3222111111111 1225668999999999988888776643
No 208
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=79.85 E-value=17 Score=39.26 Aligned_cols=117 Identities=19% Similarity=0.342 Sum_probs=72.4
Q ss_pred cEEEEECCchhhHHHHHHHHHHc-CcEE-EEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~-Gi~v-~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++..+......+.+. |+.+ ..+++..+++..+......++.+++|..+...+ ....+..+++...
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~---G~eli~~l~~~~~-- 76 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQEN---GLDLLPVLHEAGC-- 76 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCC---cHHHHHHHHhhCC--
Confidence 36899999999888888888764 6654 467888888877654345578888887654432 2234455544322
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHH
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~ 861 (1033)
...++++............. ..+...++.||.....+..++...
T Consensus 77 ~~~vI~ls~~~~~~~~~~al-~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 77 KSDVIVISSAADAATIKDSL-HYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCEEEEECCCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHH
Confidence 22344443322211111111 125667899999998888887653
No 209
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=79.53 E-value=18 Score=39.61 Aligned_cols=120 Identities=11% Similarity=0.177 Sum_probs=76.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHc-CcEE-EEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~-Gi~v-~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++.........+... ++.+ ..+.+..+++..+.. ..++.+++|..+...+ .......++......
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~d---G~~~l~~i~~~~~~~ 77 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLD---GIGVLEKLNEIELSA 77 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhhcccc
Confidence 57999999999888888888754 4554 468899999887754 4578888887654332 223444555433222
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
.+.++++............ -..+...++.||+....+...+.+.+..
T Consensus 78 ~~~iI~lt~~~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 78 RPRVIMLSAFGQEKITQRA-VALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCeEEEEeCCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 3444444322111111111 1225668999999999999999887653
No 210
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=79.35 E-value=17 Score=39.65 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHhhCCCEEE--EEcChHHHHHHhCCCCCccEEEEcCCCC---------C-CCHHHHHHHHHhcccccc
Q 001676 894 DNNVNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 894 Dn~~n~~vl~~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlIlmDi~MP---------~-mdG~ea~~~IR~~e~~~~ 961 (1033)
|.....+..+ .|-+.|+.|. |++|...|-.+.. -.+|+| || + .+ .+.++.|++.
T Consensus 108 d~~~tv~aa~-~L~~~Gf~vlpyc~dd~~~ar~l~~--~G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~----- 173 (248)
T cd04728 108 DPIETLKAAE-ILVKEGFTVLPYCTDDPVLAKRLED--AGCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER----- 173 (248)
T ss_pred CHHHHHHHHH-HHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh-----
Confidence 3333333333 3445699876 6677777766552 357877 77 1 13 6777888762
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHH
Q 001676 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 1021 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~v 1021 (1033)
..+|||+=-+-...++..+|++.|+|+++ .|.-++..+.++.
T Consensus 174 ------------------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 174 ------------------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred ------------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHH
Confidence 25899998888999999999999999996 4644444444433
No 211
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=78.82 E-value=32 Score=34.20 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHhhCCCEEEEE---cChHHHHHHhCCCCCccEEEEcCCCCCC-CH-HHHHHHHHhcccccccccccccc
Q 001676 895 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 895 n~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG-~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
+..-..++..+|+..||+|... ...++-++... ++.+|+|-+-..|-.. .. -++.+++|+. |
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~~~adiVglS~l~~~~~~~~~~~~~~l~~~----------g-- 80 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-ETKADAILVSSLYGHGEIDCKGLRQKCDEA----------G-- 80 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEecccccCHHHHHHHHHHHHHC----------C--
Confidence 3445578889999999999864 45667777664 5789999888766322 11 2333444431 1
Q ss_pred chhhhcccCCCCCcEEEEccCC--cHH----HHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 970 SIEAYENVSNFHVPILAMTADV--IQA----TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~--~~~----~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
...+ .+++-+.. ..+ ...++.++|++......-..+++...+++.+
T Consensus 81 ---------l~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 81 ---------LEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred ---------CCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 1133 34455431 122 2456889999999999899999998888765
No 212
>PRK00208 thiG thiazole synthase; Reviewed
Probab=78.81 E-value=18 Score=39.54 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=60.6
Q ss_pred HHHhhCCCEEE--EEcChHHHHHHhCCCCCccEEEEcCCCC---------C-CCHHHHHHHHHhccccccccccccccch
Q 001676 904 AGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMP---------E-MDGFEATKIIREMEHNFNNRIRRGEVSI 971 (1033)
Q Consensus 904 ~~L~~~g~~v~--~a~~g~eAl~~l~~~~~~DlIlmDi~MP---------~-mdG~ea~~~IR~~e~~~~~~~~~g~~~~ 971 (1033)
+.|-+.|+.|. |++|...|-.+.. -.+|+| || + .+ .+.++.|++.
T Consensus 117 ~~L~~~Gf~vlpyc~~d~~~ak~l~~--~G~~~v-----mPlg~pIGsg~gi~~-~~~i~~i~e~--------------- 173 (250)
T PRK00208 117 EILVKEGFVVLPYCTDDPVLAKRLEE--AGCAAV-----MPLGAPIGSGLGLLN-PYNLRIIIEQ--------------- 173 (250)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---------------
Confidence 34445699876 6777777766652 357877 77 1 13 6777777762
Q ss_pred hhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHH
Q 001676 972 EAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREV 1021 (1033)
Q Consensus 972 ~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~v 1021 (1033)
..+|||+=-+-...++..+|++.|+|+.+ .|.-++..+.++.
T Consensus 174 --------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af 220 (250)
T PRK00208 174 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAF 220 (250)
T ss_pred --------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHH
Confidence 25899998888999999999999999986 4644444444333
No 213
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=77.66 E-value=23 Score=37.46 Aligned_cols=121 Identities=10% Similarity=0.137 Sum_probs=74.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCc-E-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi-~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
+.+++++|+++......+..|...+. . +..+.+..+++..+.. ..++++++|.............++..++....
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~- 79 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHFP- 79 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCC-
Confidence 46899999999998888888887654 3 6678888888877654 34688888865543210112334555554321
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
..+++++............ -..|...++.||.....+..++..+..
T Consensus 80 -~~~iIvls~~~~~~~~~~a-~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 80 -SLSIIVLTMNNNPAILSAV-LDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred -CCcEEEEEecCCHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 2344444432222111111 122566889999999999888887653
No 214
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=76.50 E-value=1.9 Score=53.63 Aligned_cols=51 Identities=29% Similarity=0.539 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCChhhHh--------hccCcccc---cCCCCCCCCCc-ccchHHHHHHHHHHc
Q 001676 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQ---VGPSISRTHGG-TGIGLSISKYLVGRM 688 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q---~d~s~s~~~~G-tGLGLsI~k~Lv~~m 688 (1033)
.|+|.|+|.|||-+..+ -+|.-... .|.+..+..|| .|.|++.|.-+-+.+
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 48999999999975332 23332111 11122222334 699999888777643
No 215
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=76.24 E-value=1.8 Score=54.62 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=23.3
Q ss_pred CceEEec--H-HHHHHHHHHHHHHHHhcc---CCCeEEEEE
Q 001676 543 PETLIGD--P-GRFRQIITNLMGNSIKFT---EKGHIFVTV 577 (1033)
Q Consensus 543 p~~v~gD--~-~rL~QIL~NLl~NAiKfT---~~G~I~v~v 577 (1033)
|.+.+|+ + .-|.+++.-||+|||.-. ....|.|.+
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i 65 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTI 65 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEE
Confidence 4455554 3 468999999999999832 234555554
No 216
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=76.08 E-value=29 Score=36.50 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=74.3
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++..+......++..|+.+..+.+..+++..+.. ..++.+++|........ ....+...++.... ..|.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~-~g~~~~~~i~~~~~-~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEID-GGFMLCQDLRSLSA-TLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCC-CHHHHHHHHHhcCC-CCCE
Confidence 68999999998888889999999999989898888877644 34678888765533111 12334445544321 1243
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
++ +............ -..+...++.||.....+...++..+.
T Consensus 78 i~-ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 78 IF-LTARDSDFDTVSG-LRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EE-EECCCCHHHHHHH-HhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 33 3322111111111 122566789999999988888877664
No 217
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=75.93 E-value=41 Score=30.56 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=70.4
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCc-EEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi-~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
..+++++++++.........+...|. .+..+.+..+++..... ..++.++++..... .........++......
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~---~~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPN---MDGLELLKTIRADGAMS 79 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCC---CCHHHHHHHHHhCCCcC
Confidence 46889999999999888899999998 47778888888776543 34677777644322 12233444454432222
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l 862 (1033)
...++++............ -..+...++.||+....+...++..+
T Consensus 80 ~~~~i~~~~~~~~~~~~~~-~~~g~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 80 ALPVLMVTAEAKKENIIAA-AQAGASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred CCcEEEEECCCCHHHHHHH-HHhCCCeEEECCCCHHHHHHHHHHHH
Confidence 2223333322111111111 11245678899999888877776654
No 218
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=75.73 E-value=13 Score=44.05 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=76.2
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
..+++++|+++..+......+..+|+.+..+.+..+++..+.. ..++++++|..+...+ .......++... ..
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~---G~~~~~~ir~~~--~~ 77 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMD---GIATLKEIKALN--PA 77 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--CC
Confidence 3689999999999999999999999999999999999887754 3468888887664422 223444444422 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
..++++............. ..+...++.||+....+...+..++.
T Consensus 78 ~~vi~lt~~~~~~~~~~a~-~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 78 IPVLIMTAYSSVETAVEAL-KTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred CeEEEEECCCCHHHHHHHH-HhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 2333333221111111111 12455788999999888888776553
No 219
>PRK15115 response regulator GlrR; Provisional
Probab=75.68 E-value=12 Score=44.73 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=77.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
..+++++|+++.........++..|+.+..+.+..+++..+.. ..++++++|......+ ...++..++... ..
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~---g~~ll~~l~~~~--~~ 77 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMD---GMQLFAEIQKVQ--PG 77 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhcC--CC
Confidence 3689999999999999999999999999999999999887754 3468888887653322 223444444322 12
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
..++++............ -..+...++.||+....+...+..++.
T Consensus 78 ~pvIvlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 78 MPVIILTAHGSIPDAVAA-TQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred CcEEEEECCCCHHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 233333322111111111 122456789999999999988887765
No 220
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=75.48 E-value=2.3 Score=52.69 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCChhhHh-----------hccCccccc---CCCCCCCCCcccchHHHHHHHHHHc
Q 001676 638 IVSVEDTGQGIPLEAQS-----------RIFTPFMQV---GPSISRTHGGTGIGLSISKYLVGRM 688 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~-----------~IFepF~q~---d~s~s~~~~GtGLGLsI~k~Lv~~m 688 (1033)
.|+|.|+|.|||-+..+ -+|.-.... +.+..-..|-.|.|.+.|.-|-+.+
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 48999999999986542 223222111 1111112234799999988776655
No 221
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=75.14 E-value=50 Score=32.57 Aligned_cols=106 Identities=10% Similarity=0.087 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhhCCCEEEEE---cChHHHHHHhCCCCCccEEEEcCCCCC-CCH-HHHHHHHHhcccccccccccccc
Q 001676 895 NNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MDG-FEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 895 n~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~-mdG-~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
+..-..++..+|+..||+|.-. ...++-++... ++++|+|.+-.-|.. |.. -++.+.+|+.
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~-~~~adiVglS~L~t~~~~~~~~~~~~l~~~------------- 77 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-ETDADAILVSSLYGHGEIDCKGLREKCDEA------------- 77 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCCHHHHHHHHHHHHHC-------------
Confidence 3445578889999999999853 35566666664 578999988876643 322 2444555541
Q ss_pred chhhhcccCCCCCcEEEEccCC------cHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHh
Q 001676 970 SIEAYENVSNFHVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREVSR 1023 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~------~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1023 (1033)
...++||++ -+.. ..++..+..++|++......-+++++...+++
T Consensus 78 --------gl~~v~viv-GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~~ 128 (128)
T cd02072 78 --------GLKDILLYV-GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLKK 128 (128)
T ss_pred --------CCCCCeEEE-ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHhC
Confidence 112455543 3331 13455678899999999988888888877653
No 222
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=75.08 E-value=24 Score=37.37 Aligned_cols=101 Identities=21% Similarity=0.192 Sum_probs=67.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcCCCCCC--CHHHHHHHHHhc
Q 001676 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREM 956 (1033)
Q Consensus 886 ~~~ILIV----DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~ea~~~IR~~ 956 (1033)
+.+||+. |-+..=..++..+|+..|++|.... ..++.++.+ ..+.||+|-+-..|+.. +--++.+.+|+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~-~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV-KEHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-HHcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 3578888 7888878999999999999998532 345556655 35789999999877654 223444555542
Q ss_pred cccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001676 957 EHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 957 e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
. ....++|++--+....+ -+-+.|+|.|-.=
T Consensus 161 ~--------------------~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 161 G--------------------LRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred C--------------------CCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 1 12256776655544432 4667799998753
No 223
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=74.92 E-value=30 Score=36.91 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=73.9
Q ss_pred cEEEEECCchhhHHHHHHHHHH-cCcE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~-~Gi~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++..+......+.+ .|+. +..+.+..+++..+.. ..++.+++|..+...+ ....+..++....
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~---gle~~~~l~~~~~-- 77 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGR---GINLLHELVQAHY-- 77 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCc---HHHHHHHHHhcCC--
Confidence 6899999999998888888886 4774 6788999999887754 3468888887654332 2234455554221
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l 862 (1033)
...++++............. ..+...++.||.....+...+....
T Consensus 78 ~~~iivls~~~~~~~~~~al-~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 78 PGDVVFTTAASDMETVSEAV-RCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred CCCEEEEEcCCCHHHHHHHH-HcCccEEEECCcCHHHHHHHHHHHH
Confidence 22344443221111111111 2256678999999999988887653
No 224
>PRK13856 two-component response regulator VirG; Provisional
Probab=74.88 E-value=24 Score=37.77 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=75.2
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++..+......++..|..+..+.+..+++..+.. ..++++++|......+ ...++..++... ..|.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~---g~~l~~~i~~~~--~~pi 75 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGRED---GLEIVRSLATKS--DVPI 75 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCcE
Confidence 68999999999998999999999999999999888876643 4568888876553322 223444454321 2244
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
+++............. -..+...++.||+....+...+...+..
T Consensus 76 i~lt~~~~~~~~~~~~-l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 76 IIISGDRLEEADKVVA-LELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred EEEECCCCcHHHHHHH-HhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 4332211111111111 1225668999999999988888776643
No 225
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=74.80 E-value=13 Score=50.26 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=79.3
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
..++++||+++..+......|+..|+.+..+.+..+++..+.. ..++++++|..+...+ ...++..++.... ..
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~---g~~~~~~i~~~~~-~~ 1031 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMD---GFELTRKLREQNS-SL 1031 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcCC-CC
Confidence 4689999999999999999999999999999999999988754 4578888886654322 2334444544221 22
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
|.+++.+.. ........ -..+...++.||+....+...+.+...
T Consensus 1032 pii~lt~~~-~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1032 PIWGLTANA-QANEREKG-LSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CEEEEECCC-CHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 433332221 11111111 123567899999999999888877654
No 226
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=74.80 E-value=20 Score=36.87 Aligned_cols=117 Identities=10% Similarity=0.208 Sum_probs=74.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
++++++|+++.........++..|+.+. .+.+..+++..+.. ..++.+++|....... ...+...++.... .
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~~--~ 73 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 73 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCC---HHHHHHHHHhhCC--C
Confidence 3689999999999888899999999986 68888888877654 3568888876543322 2234444444221 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
..++++............. ..+...++.||.....+...+...+.
T Consensus 74 ~~ii~ls~~~~~~~~~~~~-~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 74 GIIIIVSAKNDHFYGKHCA-DAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CeEEEEeCCCCHHHHHHHH-HCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 2333343222211111111 22566889999999999988888764
No 227
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=74.60 E-value=16 Score=43.85 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=76.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.++++||+++..+......+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++... . ..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~d---gl~~l~~ir~~~-~-~~ 76 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMD---GLALLKQIKQRH-P-ML 76 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCC---HHHHHHHHHhhC-C-CC
Confidence 479999999999999999999999999999999999888754 3468888887654322 223444554422 1 22
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++............ -..+...++.||+....+...+...+.
T Consensus 77 pvIvlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 77 PVIIMTAHSDLDAAVSA-YQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred eEEEEECCCCHHHHHHH-HhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 23333322111111111 122566899999998888777766553
No 228
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=73.26 E-value=21 Score=38.31 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=69.5
Q ss_pred CeEEEE----eCCHHHHHHHHHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcCCCCCC-CH-HHHHHHHHhcc
Q 001676 887 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREME 957 (1033)
Q Consensus 887 ~~ILIV----DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG-~ea~~~IR~~e 957 (1033)
.+|++. |.+..=..++..+|+..|++|+... ..++.++.+ .+.++|+|.+-..|+.- .. -++.+++++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~-~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~- 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA-KEHKADIIGLSGLLVPSLDEMVEVAEEMNRR- 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-HHcCCCEEEEccchhccHHHHHHHHHHHHhc-
Confidence 478888 8888888999999999999998753 345555555 35789999999888632 22 2344455441
Q ss_pred ccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHH---HHHcCCCEEEeCCC
Q 001676 958 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---CLRSGMDGYVSKPF 1012 (1033)
Q Consensus 958 ~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~---~l~aG~ddyl~KP~ 1012 (1033)
..+++|++--+-..++..++ |-..|+|.|-.-..
T Consensus 167 ---------------------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~ 203 (213)
T cd02069 167 ---------------------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDAS 203 (213)
T ss_pred ---------------------CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHH
Confidence 22577776665555555433 34579999876433
No 229
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=73.09 E-value=16 Score=38.93 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=70.8
Q ss_pred EEEEECCchhhHHHHHHHHHHc-CcE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 740 KALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~-Gi~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
+||++||++.-+++.+.+++.. |++ |-.+.+.+++...+..-.. +.+++|.=+. +.+.. .++..++..... .
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~p--DLILLDiYmP--d~~Gi-~lL~~ir~~~~~-~ 75 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKP--DLILLDIYMP--DGNGI-ELLPELRSQHYP-V 75 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCC--CEEEEeeccC--CCccH-HHHHHHHhcCCC-C
Confidence 6899999999999999998875 555 4578889999888875443 7888875443 33222 345555543221 1
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHH
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~ 861 (1033)
..+++.|. +..+.-...-..|+..++.||+....+..+|.+-
T Consensus 76 DVI~iTAA--~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y 117 (224)
T COG4565 76 DVIVITAA--SDMETIKEALRYGVVDYLIKPFTFERLQQALTRY 117 (224)
T ss_pred CEEEEecc--chHHHHHHHHhcCchhheecceeHHHHHHHHHHH
Confidence 22333222 2111111111125678899999999988877653
No 230
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=72.71 E-value=17 Score=34.60 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcC-CCCCCC-HHHHHHHHHhccccccccccccccc
Q 001676 896 NVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDI-QMPEMD-GFEATKIIREMEHNFNNRIRRGEVS 970 (1033)
Q Consensus 896 ~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi-~MP~md-G~ea~~~IR~~e~~~~~~~~~g~~~ 970 (1033)
+.-...+..+|++.|++|...+ +.++..+.+. ..+||+|.+.. ..+... ..++++.+|+.
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~-~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~-------------- 78 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR-AERPDVVGISVSMTPNLPEAKRLARAIKER-------------- 78 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH-HTTCSEEEEEESSSTHHHHHHHHHHHHHTT--------------
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh-cCCCcEEEEEccCcCcHHHHHHHHHHHHhc--------------
Confidence 4567889999999999998773 3355555553 45799999988 444332 23455555542
Q ss_pred hhhhcccCCCCCcEEEEccCCcHHHHHHHHH--cCCCEEEeCC
Q 001676 971 IEAYENVSNFHVPILAMTADVIQATYEECLR--SGMDGYVSKP 1011 (1033)
Q Consensus 971 ~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~--aG~ddyl~KP 1011 (1033)
.++++|++==... ....+++++ .|+|..+.-.
T Consensus 79 --------~p~~~iv~GG~~~-t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 79 --------NPNIPIVVGGPHA-TADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp --------CTTSEEEEEESSS-GHHHHHHHHHHHTSEEEEEET
T ss_pred --------CCCCEEEEECCch-hcChHHHhccCcCcceecCCC
Confidence 3355666544443 444456665 7888877644
No 231
>PRK13435 response regulator; Provisional
Probab=71.82 E-value=51 Score=32.06 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=72.5
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
..+++++|+++.........+...|+.+. .+++..+++..+.. ..++.+++|....... ....+...+++. .
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~--~~~~~~~~l~~~--~- 77 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGP--TGVEVARRLSAD--G- 77 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCC--cHHHHHHHHHhC--C-
Confidence 46899999999999989999999999876 67888888776643 3568888876543211 112233333332 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l 862 (1033)
...++++...... . .. ...+...++.||+....+...+.+..
T Consensus 78 ~~pii~ls~~~~~--~-~~-~~~ga~~~l~kp~~~~~l~~~i~~~~ 119 (145)
T PRK13435 78 GVEVVFMTGNPER--V-PH-DFAGALGVIAKPYSPRGVARALSYLS 119 (145)
T ss_pred CCCEEEEeCCHHH--H-HH-HhcCcceeEeCCCCHHHHHHHHHHHH
Confidence 2233333332111 1 11 11356678999999999988887775
No 232
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=69.39 E-value=15 Score=43.87 Aligned_cols=115 Identities=17% Similarity=0.329 Sum_probs=76.8
Q ss_pred EEEEECCchhhHHHHHHHHHH--cCcEE-EEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 740 KALVVDPRPIRAKVSRYHIQR--LGIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~--~Gi~v-~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
+|++|||.+..++-.+..+.. +|+.+ ..|.++.+|++.+.. ..+++++.|-.++..+. ..+++.++.. ..
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdG---LdLI~~ike~--~p 75 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDG---LDLIKAIKEQ--SP 75 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcH---HHHHHHHHHh--CC
Confidence 699999999988888877754 57764 578899999998865 45777888776655442 2344555542 22
Q ss_pred CceEEEEeccCCccccCcCCC--CCCCCceeccCCchHHHHHHHHHHhcC
Q 001676 817 QSKLFLLANSISSSRANTSTD--GVSIPSVIMKPLRSSMLAASLQRAMGV 864 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~--~~~~~~~~~kPl~~s~l~~~l~~~l~~ 864 (1033)
+.+.+++. +.+ +.+-.+. ..|+...+.||+....+.++|.+..+.
T Consensus 76 ~~~~IILS-Gy~--eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 76 DTEFIILS-GYD--EFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred CceEEEEe-ccc--hhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 34444442 222 2222222 235668999999999999999887753
No 233
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=68.90 E-value=64 Score=34.01 Aligned_cols=115 Identities=13% Similarity=0.176 Sum_probs=74.2
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++.........+...|..+..+.+..+++..+.. ..++.+++|....... .......++.. ...|.
T Consensus 12 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~--~~~pi 84 (240)
T PRK10710 12 RILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTD---GLTLCREIRRF--SDIPI 84 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCCCE
Confidence 79999999999999999999999999999999888887653 3467888876553322 22344444432 12243
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
+ ++............ -..+...++.||+....+...+...+.
T Consensus 85 i-~l~~~~~~~~~~~~-~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 85 V-MVTAKIEEIDRLLG-LEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred E-EEEcCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 3 33322211111111 112456789999999888877776654
No 234
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=68.29 E-value=33 Score=40.91 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=76.1
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
+.+++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|..+...+ ...++..++... ...
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~---g~~ll~~i~~~~-~~~ 77 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMD---GIKALKEMRSHE-TRT 77 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC-CCC
Confidence 3579999999999998899999999999999999999887754 3468888886654322 233445554432 112
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
+.++ +............. ..+...++.||+....+...+...+.
T Consensus 78 pvI~-lt~~~~~~~~~~a~-~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 78 PVIL-MTAYAEVETAVEAL-RCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CEEE-EeCCCCHHHHHHHH-HCCccEEEecccCHHHHHHHHhhhcc
Confidence 3333 32211111111111 12566789999998888887776654
No 235
>PRK14084 two-component response regulator; Provisional
Probab=67.88 E-value=47 Score=35.70 Aligned_cols=115 Identities=14% Similarity=0.307 Sum_probs=73.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHcC-c-EEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLG-I-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~G-i-~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
++++++|+++..+......+...+ + .+..+.+..+++..+.. ..++.+++|..+...+ .......++... .
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~---G~~~~~~i~~~~--~ 73 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDES---GIELAAKIQKMK--E 73 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhcC--C
Confidence 368999999998888888898876 3 46678888888887754 3578888887665332 233444454422 1
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.+.++.++. .... .... -..+...++.||+....+..++.+...
T Consensus 74 ~~~iI~~t~-~~~~-~~~~-~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 74 PPAIIFATA-HDQF-AVKA-FELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred CCEEEEEec-ChHH-HHHH-HhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 233333332 2211 1111 112456789999999999988887763
No 236
>PRK09483 response regulator; Provisional
Probab=67.65 E-value=38 Score=35.22 Aligned_cols=117 Identities=9% Similarity=0.131 Sum_probs=73.8
Q ss_pred cEEEEECCchhhHHHHHHHHHHc-CcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~-Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++..+......++.. |+.+. .+.+..+++..+.. ..++.+++|......+ ....+..++....
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~~~~-- 74 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIG---GLEATRKILRYTP-- 74 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHCC--
Confidence 36899999999998888888875 78765 67888888876654 4568888887654322 2234444443221
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
..+++++............. ..+...++.||.....+..++..++.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 75 DVKIIMLTVHTENPLPAKVM-QAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred CCeEEEEeCCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 23344443322211111111 12566789999999999988887764
No 237
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=67.18 E-value=38 Score=35.13 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=72.1
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
+++++|+++.........+...|..+..+.+..++...+.. ..++.+++|....... .......++.... ...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~---~~~~~~~i~~~~~--~~~ 74 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMD---GLEVLQRLRKRGQ--TLP 74 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCc---HHHHHHHHHhcCC--CCC
Confidence 68899999988888888899999999888888888766543 3467787776543221 2233444443321 222
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
++++............. ..+...++.||.....+...+...+.
T Consensus 75 ii~lt~~~~~~~~~~~~-~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 75 VLLLTARSAVADRVKGL-NVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred EEEEECCCCHHHHHHHH-HcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 33333221111111111 12566789999999998888877664
No 238
>PRK09191 two-component response regulator; Provisional
Probab=66.66 E-value=64 Score=34.91 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=72.9
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
.+++++|+++..+......++..|+.+. .+.+..+++..+.. ..++++++|....... .....+..++... ..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~--~g~e~l~~l~~~~--~~ 211 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGS--SGIDAVNDILKTF--DV 211 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCC--CHHHHHHHHHHhC--CC
Confidence 4689999999999999999999999887 67888888877654 4578888887653211 1223344444432 22
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
|.++ +... ..... .....+...++.||+....+...+.+++.
T Consensus 212 pii~-ls~~-~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 212 PVIF-ITAF-PERLL--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred CEEE-EeCC-CcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 4333 3221 11111 01111234578999999999998887654
No 239
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=65.00 E-value=7.2 Score=47.73 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=28.6
Q ss_pred EEEEEEEcCCCCChhhHhhccC--------ccccc---CCCCCCCCCcccchHHHHHHHH
Q 001676 637 LIVSVEDTGQGIPLEAQSRIFT--------PFMQV---GPSISRTHGGTGIGLSISKYLV 685 (1033)
Q Consensus 637 l~i~V~DtG~GI~~e~~~~IFe--------pF~q~---d~s~s~~~~GtGLGLsI~k~Lv 685 (1033)
-.++|+||||||+.++...-.- .|.+. +...+.--|-.|+|++=|--.+
T Consensus 74 kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeee
Confidence 3689999999999987543211 12111 1111223466789988654444
No 240
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=64.71 E-value=24 Score=46.18 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=33.7
Q ss_pred CcccCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecC
Q 001676 733 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770 (1033)
Q Consensus 733 ~~~~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~ 770 (1033)
...+.|.+++++|+++..+.+....|+++|+.|..+++
T Consensus 684 ~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~ 721 (894)
T PRK10618 684 EKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDE 721 (894)
T ss_pred cccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 34578999999999999999999999999999988765
No 241
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=63.74 E-value=46 Score=34.44 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=72.1
Q ss_pred EEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceE
Q 001676 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820 (1033)
Q Consensus 741 vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1033)
++++|+++.........+...|+.+..+.+..+++..+.. ..++.+++|......+ ....+..++.... ...+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~~--~~~i 73 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMD---GWQILQTLRRSGK--QTPV 73 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHccCC--CCcE
Confidence 3678888888888888889999999999999998877644 3477888876543321 2234444443221 2233
Q ss_pred EEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 821 ~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
+++............. ..+...++.||.....+...+...+.
T Consensus 74 ivls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 74 LFLTARDSVADKVKGL-DLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred EEEEcCCCHHHHHHHH-HcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 3333222211111111 12566789999999998888877664
No 242
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=63.40 E-value=64 Score=30.32 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=59.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcCh-HHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccc
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG-KKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g-~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~ 965 (1033)
.++.++|.++... ..+...|+.+...+-. .+.++.+ .-...+.+++...-. ..-..++..+|++.
T Consensus 22 ~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~a-~i~~a~~vv~~~~~d-~~n~~~~~~~r~~~-------- 87 (116)
T PF02254_consen 22 IDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLERA-GIEKADAVVILTDDD-EENLLIALLARELN-------- 87 (116)
T ss_dssp SEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHHT-TGGCESEEEEESSSH-HHHHHHHHHHHHHT--------
T ss_pred CEEEEEECCcHHH----HHHHhcccccccccchhhhHHhhc-CccccCEEEEccCCH-HHHHHHHHHHHHHC--------
Confidence 4799999998764 3445567777765443 3445555 345689888877633 34466777888742
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+..+|++... +.+......++|+|..+.
T Consensus 88 --------------~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 88 --------------PDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp --------------TTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred --------------CCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 3467887664 345566677899988764
No 243
>PRK13557 histidine kinase; Provisional
Probab=63.26 E-value=72 Score=38.44 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=78.0
Q ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 736 ~~g~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+.+++++++++.........++..|+.+..+.+..+++..+.. ...++++++|...... ......+..++....
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~--~~~~~~~~~l~~~~~- 488 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS-HPEVDLLFTDLIMPGG--MNGVMLAREARRRQP- 488 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-CCCceEEEEeccCCCC--CCHHHHHHHHHHhCC-
Confidence 456789999999999999999999999999999999998887643 2357788887655431 112234444444221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
...++++........... ....+...++.||+....+...+...+.
T Consensus 489 -~~~ii~~~~~~~~~~~~~-~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 489 -KIKVLLTTGYAEASIERT-DAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred -CCcEEEEcCCCchhhhhh-hccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 223333332222111111 1122445689999999999888887664
No 244
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=62.67 E-value=71 Score=34.12 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=73.9
Q ss_pred EEEEECCchhhHHHHHHHHHHcC-cEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLG-IQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~G-i~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
+++++|+.+..+.-.+..|...+ ++|. .+.+..+++... .....+.+++|..+...+ .....+.+++... .
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~--~~~~pdvvl~Dl~mP~~~---G~e~~~~l~~~~p--~ 74 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA--RELKPDVVLLDLSMPGMD---GLEALKQLRARGP--D 74 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh--hhcCCCEEEEcCCCCCCC---hHHHHHHHHHHCC--C
Confidence 58999999999998888887776 6644 556688888763 335678888886554422 2334455553222 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++++............. .|...++.|......+..+++.++.
T Consensus 75 ~~vvvlt~~~~~~~v~~al~-~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 75 IKVVVLTAHDDPAYVIRALR-AGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred CcEEEEeccCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 24555544333222222222 2566789999999999999888774
No 245
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.10 E-value=44 Score=37.31 Aligned_cols=114 Identities=15% Similarity=0.262 Sum_probs=74.1
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
++++||++..........|.+.|-.+..++...+++..+... .+|++++|-.+.... ...++++.+.... .-+.
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~n---giefaeQvr~i~~-~v~i 75 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMN---GIEFAEQVRDIES-AVPI 75 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCcc---HHHHHHHHHHhhc-cCcE
Confidence 689999999999999999999998888899999999887653 456666665543222 2235555554331 1133
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
+++.+. .. -.....+......++||+.+..|..++.+...
T Consensus 76 ifIssh--~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 76 IFISSH--AE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred EEEecc--hh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 333221 11 11111111224789999999999988877663
No 246
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=61.65 E-value=2.5e+02 Score=30.77 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHHHHhc
Q 001676 549 DPGRFRQIITNLMGNSIKF 567 (1033)
Q Consensus 549 D~~rL~QIL~NLl~NAiKf 567 (1033)
...++...|.+..+..+.+
T Consensus 191 ~~~~i~~~l~~~~~~~v~~ 209 (246)
T TIGR03321 191 QREQIRDTIRETLGPEIRL 209 (246)
T ss_pred HHHHHHHHHHHHHCCCeeE
Confidence 4556666666666544443
No 247
>PLN03237 DNA topoisomerase 2; Provisional
Probab=61.03 E-value=14 Score=49.80 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCChhhHh--------hccCccccc---CCCCCCCCCc-ccchHHHHHHHHHHcCC
Q 001676 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKG 690 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---d~s~s~~~~G-tGLGLsI~k~Lv~~mgG 690 (1033)
.|+|.|+|.|||-+..+ -||...... |.+..+..|| .|.|.+.|.-+-+.+--
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~V 176 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVI 176 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEE
Confidence 48999999999986432 244433321 1111223344 69999998887765533
No 248
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=60.97 E-value=69 Score=34.10 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=72.0
Q ss_pred cEEEEECCchhhHHHHHHHHHHcC-cE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~G-i~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
++++++|+++..+......+..+| .. +..+.+..+++..+.. ..++++++|..+...+ .......++. ..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~---G~~~~~~l~~---~~ 73 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRIS---GLELVGMLDP---EH 73 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHhcc---cC
Confidence 478999999999998889999888 33 4567888888877654 3578889887765432 1223333321 11
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.+.+++++.. ... .... -..+...++.||+....+..++.++..
T Consensus 74 ~~~ii~vt~~-~~~-~~~a-~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 74 MPYIVFVTAF-DEY-AIKA-FEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred CCEEEEEecc-HHH-HHHH-HhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2444444332 211 1111 112455789999999999888887764
No 249
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=57.40 E-value=84 Score=33.67 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHHhh-CCCEEE-EEcChHHHHHHhCCCCCccEEEEcCC-------CCCCCHHHHHHHHHhccccccccccccccchh
Q 001676 902 AAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 902 l~~~L~~-~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~-------MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
+....++ .|..+. .+.+.+++.... ...+|+|..... .+.-.+++.+++|++.
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~--~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~---------------- 171 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQ--KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA---------------- 171 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHH--HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh----------------
Confidence 3344455 566554 345667765544 345888855321 1223347788888762
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.++||++..+-.+.++..++++.|+|+++.
T Consensus 172 -------~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 -------VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred -------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 158999988888899999999999998864
No 250
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=56.13 E-value=70 Score=32.44 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=70.6
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCce
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1033)
..++||++..........+++-|+.|..+.+..+++......... ...+|..+-. ......+..++.... ...
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~Pa--yAvvDlkL~~---gsGL~~i~~lr~~~~--d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPA--YAVVDLKLGD---GSGLAVIEALRERRA--DMR 83 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCc--eEEEEeeecC---CCchHHHHHHHhcCC--cce
Confidence 578999999999999999999999999999999999887654433 3334433222 223335555554322 244
Q ss_pred EEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHH
Q 001676 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (1033)
Q Consensus 820 ~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~ 861 (1033)
++++.--.+-..+-.... .|...++.||-....+...+.+.
T Consensus 84 ivvLTGy~sIATAV~AvK-lGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 84 IVVLTGYASIATAVEAVK-LGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEEEecchHHHHHHHHHH-hhhhhhcCCCCChHHHHHHHhhc
Confidence 444432111111111111 13446889999988877777654
No 251
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=54.77 E-value=73 Score=27.22 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=61.1
Q ss_pred EECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCceEEE
Q 001676 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822 (1033)
Q Consensus 743 vvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 822 (1033)
++++++.........+...|..+..+.+..+++..+.. ..++.++++....... .......++.. .. ....++
T Consensus 2 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~---~~~~~~~l~~~-~~-~~~~i~ 74 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMD---GLELLRRIRKR-GP-DIPIIF 74 (113)
T ss_pred eecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCc---hHHHHHHHHHh-CC-CCCEEE
Confidence 56777777777778888889999888888888776644 3567777765543322 12233444433 11 222333
Q ss_pred EeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHH
Q 001676 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (1033)
Q Consensus 823 l~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~ 860 (1033)
+............. ..+...++.+|.....+...+..
T Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 75 LTAHGDDEDAVEAL-KAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred EEecccHHHHHHHH-HcChhhHccCCCCHHHHHHHHHh
Confidence 32211111110111 12345677888888777766653
No 252
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=54.41 E-value=17 Score=37.99 Aligned_cols=67 Identities=24% Similarity=0.351 Sum_probs=44.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCE---EEEEcChHHHHHHh-CCCCCccEEEEcCCCCCCCH---HHHHHHHHh
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAA---VVCVERGKKATELL-MPPHQFDACFMDIQMPEMDG---FEATKIIRE 955 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~---v~~a~~g~eAl~~l-~~~~~~DlIlmDi~MP~mdG---~ea~~~IR~ 955 (1033)
+++..||-|+.....++.-+++.|.. .+...|...++... .....||+||+|- |-..+ .+++..|.+
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLAE 139 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHHH
Confidence 58999999999999999999988743 34456666666654 2356899999995 43333 446666653
No 253
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=53.85 E-value=65 Score=38.34 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=69.5
Q ss_pred EEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccC--ccchHHHHHHHhhcCCCCCc
Q 001676 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 741 vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 818 (1033)
++++|+++..+......+ .|+.+..+.+..+++..+... .++++++|..+.... .......+..++.... ..|
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~-~~p 75 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAP-DTK 75 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCC-CCC
Confidence 368888887777666666 789999999999999887643 568888887654311 1122334444444221 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++ ++............. .+...++.||+....+...+..++.
T Consensus 76 iI~-lt~~~~~~~~~~a~~-~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 76 VIV-ITGNDDRENAVKAIG-LGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEE-EecCCCHHHHHHHHH-CCccEEEeCCCCHHHHHHHHhhhhh
Confidence 333 322211111111111 2556789999999888877766553
No 254
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=53.83 E-value=1.4e+02 Score=31.33 Aligned_cols=91 Identities=21% Similarity=0.189 Sum_probs=59.0
Q ss_pred hCCCEEEE-EcChHHHHHHhCCCCCccEEEEcCCCCCC--------CHHHHHHHHHhccccccccccccccchhhhcccC
Q 001676 908 RYGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEM--------DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVS 978 (1033)
Q Consensus 908 ~~g~~v~~-a~~g~eAl~~l~~~~~~DlIlmDi~MP~m--------dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~ 978 (1033)
..|..+-. +.+..++.+.. ....|+|...--.|.. .|++..+++++.
T Consensus 102 ~~~~~~g~~~~t~~e~~~a~--~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------- 157 (212)
T PRK00043 102 GPDAIIGLSTHTLEEAAAAL--AAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA---------------------- 157 (212)
T ss_pred CCCCEEEEeCCCHHHHHHHh--HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------
Confidence 34444433 34455666654 2468999876555532 468888888763
Q ss_pred CCCCcEEEEccCCcHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHh
Q 001676 979 NFHVPILAMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 1023 (1033)
Q Consensus 979 ~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r 1023 (1033)
..++||++.-+- ..++..+++++|+|++.. +.-++.+..+.+.+
T Consensus 158 ~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 158 VGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred cCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 123888877655 678899999999999985 54466555554444
No 255
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=53.43 E-value=37 Score=37.60 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=42.5
Q ss_pred CHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccC------CcHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 001676 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLY 1018 (1033)
Q Consensus 945 dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~------~~~~~~~~~l~aG~ddyl~KP~~~~~L~ 1018 (1033)
+.++.++++|+. ..++|+++||=. ..+...++|.++|+|+.|.-.+..++..
T Consensus 75 ~~~~~~~~~r~~----------------------~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~ 132 (258)
T PRK13111 75 DVFELVREIREK----------------------DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAE 132 (258)
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 357788888842 236899999843 4556789999999999999877777766
Q ss_pred HHHHh
Q 001676 1019 REVSR 1023 (1033)
Q Consensus 1019 ~~v~r 1023 (1033)
..+.+
T Consensus 133 ~~~~~ 137 (258)
T PRK13111 133 ELRAA 137 (258)
T ss_pred HHHHH
Confidence 55544
No 256
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=53.20 E-value=42 Score=33.60 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=44.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEc----ChHHHHHHhCCCCCccEEEEcCCCCC
Q 001676 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE----RGKKATELLMPPHQFDACFMDIQMPE 943 (1033)
Q Consensus 884 ~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~----~g~eAl~~l~~~~~~DlIlmDi~MP~ 943 (1033)
+.|++|+|+..+....+-+..+|.+.|+.|..++ +.+++++ .-|+|+.-..-|.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh------hCCEEEEecCCCC
Confidence 5689999999999999999999999999999988 4444332 3699998887664
No 257
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=53.12 E-value=80 Score=32.09 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=69.1
Q ss_pred EEEEECCchhhHHHHHHHHHHc-CcE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCC
Q 001676 740 KALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~-Gi~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1033)
+++++|+++.........+... +.. +..+++..+++..+.. ..++.+++|......+ ...++..++. .
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~---g~~~~~~l~~-----~ 72 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDIS---GLELLSQLPK-----G 72 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHcc-----C
Confidence 6899999998888777777653 565 4677888888877653 3467888876543322 1223333321 2
Q ss_pred ceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 818 ~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
..++++............. ..+...++.||+....+...+..++.
T Consensus 73 ~~vi~~s~~~~~~~~~~~~-~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 73 MATIMLSVHDSPALVEQAL-NAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCEEEEECCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 2344443322211111111 12566789999999999988887774
No 258
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=52.71 E-value=55 Score=36.66 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=51.8
Q ss_pred EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001676 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+.+-++|.+.+. ..+|+|.+| +|+..+=-++.+.+|+. .++ .++..++..
T Consensus 191 IeVEv~tleea~ea~~--~GaDiI~lD-n~~~e~l~~~v~~l~~~----------------------~~~-~~leasGGI 244 (277)
T TIGR01334 191 ITVEADTIEQALTVLQ--ASPDILQLD-KFTPQQLHHLHERLKFF----------------------DHI-PTLAAAGGI 244 (277)
T ss_pred EEEECCCHHHHHHHHH--cCcCEEEEC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 4456789999999884 469999999 55555555555555531 112 368889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001676 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-+.
T Consensus 245 ~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 245 NPENIADYIEAGIDLFI 261 (277)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998754
No 259
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=52.52 E-value=1.1e+02 Score=31.19 Aligned_cols=118 Identities=12% Similarity=0.204 Sum_probs=71.4
Q ss_pred CcEEEEECCchhhHHHHHHHHHHc-CcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~-Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+++++|+++.........+... ++.+. .+.+..+++..+.. ..++++++|......+ ...+...++....
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~- 76 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTD---GFTFLKRIKQIQS- 76 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHhCC-
Confidence 357899999999888888888876 57765 56777777766543 4578888876553322 2234444444221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
...++++............ -..+...++.||+....+...+...+.
T Consensus 77 -~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 77 -TVKVLFLSSKSECFYAGRA-IQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred -CCcEEEEECCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 1223333322211111111 112556789999999999988887764
No 260
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=52.48 E-value=68 Score=32.33 Aligned_cols=117 Identities=14% Similarity=0.197 Sum_probs=71.1
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|..+..+.+..+++..+.. ..++.+++|......+ ....+..++... . ..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~---~~~~~~~l~~~~-~-~~ 76 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGID---GIELLRRLKARG-S-PL 76 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCc---HHHHHHHHHhcC-C-CC
Confidence 468999999998888888999999999988888887766543 3467777776543221 223444444322 1 22
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
.++++............. ..+...++.||+....+...+...+.
T Consensus 77 ~ii~l~~~~~~~~~~~~~-~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 77 PVIVMTGHGDVPLAVEAM-KLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred CEEEEECCCCHHHHHHHH-HcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 233333221111111111 12345678899998888877776654
No 261
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=51.41 E-value=1e+02 Score=29.35 Aligned_cols=33 Identities=33% Similarity=0.298 Sum_probs=29.9
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHH
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~ 772 (1033)
|+|++|++..|+.-....|+-+|.++..+++..
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~ 33 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD 33 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH
Confidence 589999999999999999999999999988643
No 262
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=50.77 E-value=1.1e+02 Score=32.83 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=46.7
Q ss_pred HHHHHhCCCCCcc-EEEEcCCCCCC-CH--HHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHH
Q 001676 921 KATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 996 (1033)
Q Consensus 921 eAl~~l~~~~~~D-lIlmDi~MP~m-dG--~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~ 996 (1033)
+.++.+. +...| ++++|+.--++ .| +++++++++. ..+||++-.+-.+.++.
T Consensus 149 ~~~~~~~-~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvia~GGi~~~~di 204 (230)
T TIGR00007 149 ELAKRLE-ELGLEGIIYTDISRDGTLSGPNFELTKELVKA-----------------------VNVPVIASGGVSSIDDL 204 (230)
T ss_pred HHHHHHH-hCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHHH
Confidence 3444443 34577 77788854322 22 6777877752 25899999999999999
Q ss_pred HHHHHcCCCEEEe
Q 001676 997 EECLRSGMDGYVS 1009 (1033)
Q Consensus 997 ~~~l~aG~ddyl~ 1009 (1033)
.++++.|+|+++.
T Consensus 205 ~~~~~~Gadgv~i 217 (230)
T TIGR00007 205 IALKKLGVYGVIV 217 (230)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999875
No 263
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=50.35 E-value=1e+02 Score=32.55 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=61.5
Q ss_pred eEEEE----eCCHHHHHHHHHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcCCCCCC-CH-HHHHHHHHhccc
Q 001676 888 KILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM-DG-FEATKIIREMEH 958 (1033)
Q Consensus 888 ~ILIV----DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG-~ea~~~IR~~e~ 958 (1033)
+|++. |.+..-..++..+|+..||+|.... ..++.++.+. ...||+|-+-..|+.- .. -++.+.+|+..
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~- 163 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-KEKPLMLTGSALMTTTMYGQKDINDKLKEEG- 163 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEccccccCHHHHHHHHHHHHHcC-
Confidence 55544 5566677888999999999999643 3455556553 5789999998877643 22 23445555421
Q ss_pred cccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 959 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 959 ~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
....++|++--+-..+ .-|.+.|+|.|-.
T Consensus 164 -------------------~~~~v~i~vGG~~~~~---~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 -------------------YRDSVKFMVGGAPVTQ---DWADKIGADVYGE 192 (197)
T ss_pred -------------------CCCCCEEEEEChhcCH---HHHHHhCCcEEeC
Confidence 1224565544333332 3466889999965
No 264
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=49.60 E-value=51 Score=35.60 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=42.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCE--EEEEc--ChHHHHHHhCCCCCccEEEEcCCCC
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAA--VVCVE--RGKKATELLMPPHQFDACFMDIQMP 942 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~--v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP 942 (1033)
.+|.-+|-|+...+.+++.+++.|.. +.... +..+.++.. ....||+||+|..=+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK~ 143 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADKA 143 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCChh
Confidence 38999999999999999999999863 44544 555555542 247899999998644
No 265
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=49.05 E-value=1.8e+02 Score=31.15 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=53.4
Q ss_pred HHhhCC-CEE-EEEcChHHHHHHhCCCCCccEEEEcCC-------CCCCCHHHHHHHHHhccccccccccccccchhhhc
Q 001676 905 GLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQ-------MPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 975 (1033)
Q Consensus 905 ~L~~~g-~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~-------MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~ 975 (1033)
.+++.| ..+ ..+.+..++..... ..+|+|..... .+...+++.++++++.
T Consensus 117 ~~~~~g~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~------------------- 175 (219)
T cd04729 117 RIHEEYNCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA------------------- 175 (219)
T ss_pred HHHHHhCCeEEEECCCHHHHHHHHH--cCCCEEEccCccccccccCCCCCCHHHHHHHHHh-------------------
Confidence 334444 443 34566777766553 45888754211 1223357888888862
Q ss_pred ccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 976 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 976 ~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
..+||++..+-.+.++..+++++|+|+.+.
T Consensus 176 ----~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 176 ----LGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred ----cCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 158999988888899999999999999875
No 266
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=49.03 E-value=1e+02 Score=39.26 Aligned_cols=110 Identities=8% Similarity=0.064 Sum_probs=74.5
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---cChHHHHHHhCCCCCccEEEEcCCCCCC--CHHHHHHHHHhcccccccccccc
Q 001676 893 DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM--DGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~l~~~~~~DlIlmDi~MP~m--dG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
|.+..-...+..+|+..|++|+.- .+.++.++... .+.+|+|.+-..+... ..-++++.+|+..
T Consensus 593 d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~-~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G---------- 661 (714)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV-ENDVHVVGVSSLAAGHKTLVPALIEALKKLG---------- 661 (714)
T ss_pred cchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH-HcCCCEEEEeccchhhHHHHHHHHHHHHhcC----------
Confidence 345555678889999999999643 34667777774 4678998876655432 2345666666521
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
..+++|+ +-+....++.+.+.++|+|+|+..=.+..+....+.+.+
T Consensus 662 -----------~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 662 -----------REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred -----------CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 1134333 445434555677889999999999999988888877655
No 267
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=48.45 E-value=1.2e+02 Score=26.91 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=47.4
Q ss_pred hHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHHHHHHH
Q 001676 444 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523 (1033)
Q Consensus 444 vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v~~~~ 523 (1033)
+.|-+||-|..|.+++.+-.....+++.++.+..+......+.. +.+.|--+ + ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~-vh~~L~~~----~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIAL-VHEQLYQS----E----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcC----C----CCCeecHHHHHHHHHHHH
Confidence 57999999999999999876666666656666555555444432 33333221 1 124589999999888765
Q ss_pred H
Q 001676 524 S 524 (1033)
Q Consensus 524 ~ 524 (1033)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 268
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.79 E-value=1.9e+02 Score=35.80 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChH-HHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~-eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+..+.++|.|+...+.+ ++.|+.+.+.+-.+ +.++.. .-++.|.++.-..=...+ ..++..+|+.
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a-~i~~a~~viv~~~~~~~~-~~iv~~~~~~-------- 505 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLA-HLDCARWLLLTIPNGYEA-GEIVASAREK-------- 505 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhc-CccccCEEEEEcCChHHH-HHHHHHHHHH--------
Confidence 45689999988654433 45688888766443 445544 235688777654322111 2344555653
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhCCC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFFPP 1027 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~~~ 1027 (1033)
+++.+||+-+.+ .+..+...++|+|..+. ..+++.+.+.+.+..
T Consensus 506 --------------~~~~~iiar~~~--~~~~~~l~~~Gad~vv~---p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 506 --------------RPDIEIIARAHY--DDEVAYITERGANQVVM---GEREIARTMLELLET 549 (558)
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHcCCCEEEC---hHHHHHHHHHHHhcC
Confidence 235788887653 45666677899997773 344555666665544
No 269
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=47.55 E-value=34 Score=42.13 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=31.9
Q ss_pred eEEEEEEEcCCCCChhhHhhccCcccccC------CCCCCCCCcccchHH
Q 001676 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVG------PSISRTHGGTGIGLS 679 (1033)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~d------~s~s~~~~GtGLGLs 679 (1033)
.+.|.|.|+|.|+..+++..+=++|++.+ ....+.+|=-|=.|+
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeALa 98 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEALA 98 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhhh
Confidence 35789999999999999999988887643 233455554554444
No 270
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.35 E-value=1.1e+02 Score=38.29 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=63.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHH-HHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK-ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~e-Al~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+..+.++|.|+...+. +++.|+.+...+-.+. .++.. .-++.|+++.-..=++ +-..+++.+|+.
T Consensus 423 g~~vvvID~d~~~v~~----~~~~g~~v~~GDat~~~~L~~a-gi~~A~~vv~~~~d~~-~n~~i~~~~r~~-------- 488 (601)
T PRK03659 423 KMRITVLERDISAVNL----MRKYGYKVYYGDATQLELLRAA-GAEKAEAIVITCNEPE-DTMKIVELCQQH-------- 488 (601)
T ss_pred CCCEEEEECCHHHHHH----HHhCCCeEEEeeCCCHHHHHhc-CCccCCEEEEEeCCHH-HHHHHHHHHHHH--------
Confidence 4579999999875543 3557888888765543 34444 3356788877654432 234566677763
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
+++++||+-+. +.+..++..++|+|..+.-
T Consensus 489 --------------~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 489 --------------FPHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred --------------CCCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 34678887665 4566677889999988754
No 271
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.28 E-value=1.9e+02 Score=26.68 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=44.0
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEE--c----ChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCV--E----RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREM 956 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a--~----~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~ 956 (1033)
+||||-..+.+...++..++++|+..... . .....+.... ...|+|++=.+ .-+-.++..+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~---~vsH~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTD---YVSHNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeC---CcChHHHHHHHHH
Confidence 48999998888899999999999998888 2 2222244332 34688876432 3446667777764
No 272
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.14 E-value=1.7e+02 Score=32.80 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=61.1
Q ss_pred eEEEEeCCHHHHHHHHHHHhh---CC---CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKR---YG---AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFN 961 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~---~g---~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~ 961 (1033)
.|||-|++-... .+...+++ .. -..+.+++-+||.+.+. ...|+|.+|=..|+ +=-++.+.+++..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~--agaDiI~LDn~~~e-~l~~~v~~l~~~~---- 227 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK--AGADIIMLDNMTPE-EIREVIEALKREG---- 227 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH--cCcCEEEECCCCHH-HHHHHHHHHHhcC----
Confidence 478777775443 34444432 22 24456789999999884 46899999954332 2223333333210
Q ss_pred ccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 962 NRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 962 ~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
..++ ..+..++....+...+..+.|+|.+.+
T Consensus 228 ----------------~~~~-~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 228 ----------------LRER-VKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred ----------------cCCC-EEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 0122 467889999999999999999987653
No 273
>PLN02591 tryptophan synthase
Probab=46.86 E-value=54 Score=36.16 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCcEEEEccCC------cHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 981 HVPILAMTADV------IQATYEECLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 981 ~iPIIalTa~~------~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
++|+|+||=.. .+.-.++|.++|+|+.|.-.+..++......++
T Consensus 78 ~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 78 SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 57999888544 355688999999999999988888776665543
No 274
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=45.80 E-value=25 Score=42.43 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCChhhHhhccCccccc
Q 001676 638 IVSVEDTGQGIPLEAQSRIFTPFMQV 663 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (1033)
.+.|+|+|.||-.++++-+-++|.+.
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhh
Confidence 47899999999999999999999753
No 275
>PLN03128 DNA topoisomerase 2; Provisional
Probab=45.74 E-value=29 Score=46.14 Aligned_cols=50 Identities=28% Similarity=0.552 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCChhhHh--------hccCccccc---CCCCCCCCCc-ccchHHHHHHHHHH
Q 001676 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 687 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---d~s~s~~~~G-tGLGLsI~k~Lv~~ 687 (1033)
.|+|.|+|.|||-+..+ -||...... |....+..|| .|.|.+.|.-+-+.
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~ 148 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE 148 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCe
Confidence 48999999999976432 234333221 1111222344 58999887766554
No 276
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=45.67 E-value=50 Score=35.26 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=42.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCC--EEE-EEcChHHHHHHhCC---CCCccEEEEcCC
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP---PHQFDACFMDIQ 940 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eAl~~l~~---~~~~DlIlmDi~ 940 (1033)
+.+|.-+|-|+...+.++..+++.|+ .|. ...+..+.+..+.. ..+||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 35899999999999999999999886 344 34667777776532 236999999985
No 277
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=45.64 E-value=2.5e+02 Score=29.25 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=55.0
Q ss_pred HHHHHHHHhhCCCEEE----EEcChHHHHHHhCCCCCccEEEEcCC-----CCCCCHHHHHHHHHhcccccccccccccc
Q 001676 899 LKVAAAGLKRYGAAVV----CVERGKKATELLMPPHQFDACFMDIQ-----MPEMDGFEATKIIREMEHNFNNRIRRGEV 969 (1033)
Q Consensus 899 ~~vl~~~L~~~g~~v~----~a~~g~eAl~~l~~~~~~DlIlmDi~-----MP~mdG~ea~~~IR~~e~~~~~~~~~g~~ 969 (1033)
...+....++.|..+. .+.+..++...+ ....|.+..... .....+.+.++++++.
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~--~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~------------- 156 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL--KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL------------- 156 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH--HCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-------------
Confidence 3445556667787654 445777777744 246788877421 1124566777777652
Q ss_pred chhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 970 SIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 970 ~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.++||++ ++....+...+++++|+|.++.
T Consensus 157 ----------~~~~i~~-~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 ----------LGVKVAV-AGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred ----------cCCCEEE-ECCcCHHHHHHHHhcCCCEEEE
Confidence 2467765 4455689999999999998764
No 278
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.52 E-value=1.3e+02 Score=32.89 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=43.8
Q ss_pred ccEEEEcCCCCCC-CH--HHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE
Q 001676 932 FDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 932 ~DlIlmDi~MP~m-dG--~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
-.+|++|+..-++ .| +++++++++. .++||++--+-.+.++..++++.|+++.+
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~-----------------------~~ipvi~~GGi~s~edi~~l~~~G~~~vi 219 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKA-----------------------TTIPVIASGGIRHQQDIQRLASLNVHAAI 219 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 3699999976543 33 5667777652 25899999999999999999999999988
Q ss_pred e
Q 001676 1009 S 1009 (1033)
Q Consensus 1009 ~ 1009 (1033)
.
T Consensus 220 v 220 (234)
T PRK13587 220 I 220 (234)
T ss_pred E
Confidence 5
No 279
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=45.25 E-value=34 Score=35.96 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=41.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcC
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi 939 (1033)
++||++|.....---+..+|+..|++|....|....++.+ ....||.|++--
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~-~~~~pd~iviSP 53 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELI-EALKPDAIVISP 53 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHH-hhcCCCEEEEcC
Confidence 4799999999999999999999999999888874333334 235689999864
No 280
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=44.69 E-value=2.3e+02 Score=28.51 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=76.7
Q ss_pred EeCCHHHHHHHHHHHhhCCCEEEE---EcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccc
Q 001676 892 VDDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 892 VDDn~~n~~vl~~~L~~~g~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
.|-+..-.+++...|+..|++|+. ..++.|++.... ++..|+|.+... .-...+++..+++.-++ .|
T Consensus 22 lDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~-~~dv~vIgvSsl--~g~h~~l~~~lve~lre------~G- 91 (143)
T COG2185 22 LDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV-EEDVDVIGVSSL--DGGHLTLVPGLVEALRE------AG- 91 (143)
T ss_pred ccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH-hcCCCEEEEEec--cchHHHHHHHHHHHHHH------hC-
Confidence 366666778999999999999995 568899998874 467898877542 22334555655542211 01
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
..++. +.+-+.-..++..+..+.|++.++.-=....+....|..-+
T Consensus 92 ----------~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 92 ----------VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred ----------CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 12333 35666667777888888999999987777777666555433
No 281
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=44.28 E-value=1.2e+02 Score=32.82 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=48.7
Q ss_pred hHHHHHHhCCCCCccEEEEcCCCCCC-CH--HHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHH
Q 001676 919 GKKATELLMPPHQFDACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 995 (1033)
Q Consensus 919 g~eAl~~l~~~~~~DlIlmDi~MP~m-dG--~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~ 995 (1033)
..+.++.+.. ..-.++++|+..-++ .| ++++++|.+. ..+||++--+-.+.++
T Consensus 148 ~~~~~~~~~~-~~~~li~~di~~~G~~~g~~~~~~~~i~~~-----------------------~~ipvi~~GGi~s~ed 203 (233)
T cd04723 148 PEELLRRLAK-WPEELIVLDIDRVGSGQGPDLELLERLAAR-----------------------ADIPVIAAGGVRSVED 203 (233)
T ss_pred HHHHHHHHHH-hCCeEEEEEcCccccCCCcCHHHHHHHHHh-----------------------cCCCEEEeCCCCCHHH
Confidence 4455555533 322599999976443 22 5667777652 2589999999999999
Q ss_pred HHHHHHcCCCEEEe
Q 001676 996 YEECLRSGMDGYVS 1009 (1033)
Q Consensus 996 ~~~~l~aG~ddyl~ 1009 (1033)
..+++++|+++.+.
T Consensus 204 i~~l~~~G~~~viv 217 (233)
T cd04723 204 LELLKKLGASGALV 217 (233)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999874
No 282
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=44.19 E-value=2.6e+02 Score=29.76 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=51.9
Q ss_pred HhhCCCEEEE-EcChHHHHHHhCCCCCccEEEEc---CCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCC
Q 001676 906 LKRYGAAVVC-VERGKKATELLMPPHQFDACFMD---IQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFH 981 (1033)
Q Consensus 906 L~~~g~~v~~-a~~g~eAl~~l~~~~~~DlIlmD---i~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~ 981 (1033)
....|..+.. +.+-+++.+.. ...+|.+..- ..... .+++.++++++.- ...
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~--~~g~~~i~~t~~~~~~~~-~~~~~~~~l~~~~---------------------~~~ 172 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERAL--ALGAKIIGINNRDLKTFE-VDLNTTERLAPLI---------------------PKD 172 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHH--HcCCCEEEEeCCCccccC-cCHHHHHHHHHhC---------------------CCC
Confidence 3557877643 44555544444 2457776443 11111 2357778777521 125
Q ss_pred CcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 982 VPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 982 iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+|+++..+-...++..+++++|+|+++.
T Consensus 173 ~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 173 VILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 7999999999999999999999999864
No 283
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=44.04 E-value=3e+02 Score=30.51 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=66.2
Q ss_pred EEEeC-CHHHHHHHHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcC---CCCCCCHHHHHHHHHhccccccccc
Q 001676 890 LIVDD-NNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDI---QMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 890 LIVDD-n~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi---~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
|++.+ .+.....+....+.+|..+. .+.+.+|+..... ..+|+|-..- +--.-| ++.+.++...-+
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~--~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p------ 209 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK--LGAPLIGINNRNLKTFEVD-LETTERLAPLIP------ 209 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEECCCCcccccCC-HHHHHHHHHhCC------
Confidence 44444 34445555555567887654 5677777765542 3578775431 122333 666777765211
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHH
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLY 1018 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~ 1018 (1033)
...|+|+.++-...++..++.++|+|+++ .||-++.+..
T Consensus 210 ---------------~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~ 253 (260)
T PRK00278 210 ---------------SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAAL 253 (260)
T ss_pred ---------------CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHH
Confidence 13589999999999999999999999975 4555554443
No 284
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=43.59 E-value=2e+02 Score=31.91 Aligned_cols=99 Identities=15% Similarity=0.039 Sum_probs=66.5
Q ss_pred HHHHHhhCCCE--EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCC
Q 001676 902 AAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 979 (1033)
Q Consensus 902 l~~~L~~~g~~--v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~ 979 (1033)
++..|+.-... +........+.+.+. ...||.|++|++=-.+|--++...||..+.
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~--------------------- 67 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLG-LAGFDWLVLDGEHAPNDVSTFIPQLMALKG--------------------- 67 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHH-hcCCCEEEEccccCCCCHHHHHHHHHHHhh---------------------
Confidence 55556542221 223334456666664 356999999999999998888888887431
Q ss_pred CCCcEEEEccCCcHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHH
Q 001676 980 FHVPILAMTADVIQATYEECLRSGMDGYVSKPF-EAEQLYREVS 1022 (1033)
Q Consensus 980 ~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP~-~~~~L~~~v~ 1022 (1033)
..++.++=....+.....+++++|+++.+.-=+ +.++..+.++
T Consensus 68 ~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 68 SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 123444445666889999999999999987544 5666666655
No 285
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=42.96 E-value=3.2e+02 Score=31.46 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=62.3
Q ss_pred eEEEEe----CCHHHHHHHHHHHhhCC-CEEEE--EcChHHHHHHhCCCCCccEEEEcC-------CCC----CCC--HH
Q 001676 888 KILIVD----DNNVNLKVAAAGLKRYG-AAVVC--VERGKKATELLMPPHQFDACFMDI-------QMP----EMD--GF 947 (1033)
Q Consensus 888 ~ILIVD----Dn~~n~~vl~~~L~~~g-~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi-------~MP----~md--G~ 947 (1033)
.++++| +.....+.++.+=++++ ..|.. +.+.++|..+.. ..+|.+..-+ +-+ ... ++
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 467774 33444455555544554 44443 668888877763 4688875331 110 112 45
Q ss_pred HHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 948 EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 948 ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.+++.+++. .++|||+--+-....+..+|+.+|+|.+..
T Consensus 191 ~ai~~~~~~-----------------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 191 AALRWCAKA-----------------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 566666641 258999999999999999999999997754
No 286
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.54 E-value=1e+02 Score=30.24 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001676 89 LITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIST 150 (1033)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~ 150 (1033)
.++++++|+++++++.++......+. ..+...-++.-.-|.++=+...+|+-.-|-|+..
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~q--~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~ 61 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQKQ--AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDN 61 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999888887765332 3444555555555555555555565555555544
No 287
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=41.61 E-value=23 Score=47.70 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCChhhHh--------hccCcccccC---CCCCCCCCc-ccchHHHHHHHHHHc
Q 001676 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRM 688 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~d---~s~s~~~~G-tGLGLsI~k~Lv~~m 688 (1033)
.|+|.|+|.|||-+..+ -||.-....+ ....+..|| .|.|.+.|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 48999999999986432 2444333211 111222344 599999888776654
No 288
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.59 E-value=76 Score=35.11 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCc------HHHHHHHHHcCCCEEEeCCCCHHHHH
Q 001676 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLY 1018 (1033)
Q Consensus 945 dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~------~~~~~~~l~aG~ddyl~KP~~~~~L~ 1018 (1033)
+.++.+++||+. ...+|++.|+-... +....+|.++|+|+.+.-....++..
T Consensus 73 ~~~~~v~~ir~~----------------------~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~ 130 (256)
T TIGR00262 73 KCFELLKKVRQK----------------------HPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESG 130 (256)
T ss_pred HHHHHHHHHHhc----------------------CCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHH
Confidence 347788888852 13578888887665 67788999999999998877777665
Q ss_pred HHHHh
Q 001676 1019 REVSR 1023 (1033)
Q Consensus 1019 ~~v~r 1023 (1033)
..+.+
T Consensus 131 ~~~~~ 135 (256)
T TIGR00262 131 DLVEA 135 (256)
T ss_pred HHHHH
Confidence 55543
No 289
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=40.31 E-value=1.6e+02 Score=27.60 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=26.9
Q ss_pred cCCcHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHh
Q 001676 989 ADVIQATYEECLRSGMDGYVSKPF--EAEQLYREVSR 1023 (1033)
Q Consensus 989 a~~~~~~~~~~l~aG~ddyl~KP~--~~~~L~~~v~r 1023 (1033)
.....+...+|+++|.+=++.||+ +.+++.+.++.
T Consensus 72 ~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~ 108 (120)
T PF01408_consen 72 PSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEA 108 (120)
T ss_dssp GGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHH
Confidence 344556778899999999999999 77777666543
No 290
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.26 E-value=2e+02 Score=32.35 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=48.8
Q ss_pred EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001676 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+++.+.+. ..+|+|.+|= |+..+=-++...++. ..+|..++..
T Consensus 196 IeVEv~slee~~ea~~--~gaDiImLDn-~s~e~l~~av~~~~~--------------------------~~~leaSGgI 246 (281)
T PRK06543 196 VEVEVDRLDQIEPVLA--AGVDTIMLDN-FSLDDLREGVELVDG--------------------------RAIVEASGNV 246 (281)
T ss_pred EEEEeCCHHHHHHHHh--cCCCEEEECC-CCHHHHHHHHHHhCC--------------------------CeEEEEECCC
Confidence 3457899999999873 4689999994 443333344443332 1268889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001676 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-..
T Consensus 247 ~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 247 NLNTVGAIASTGVDVIS 263 (281)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998554
No 291
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=40.10 E-value=2.6e+02 Score=30.93 Aligned_cols=96 Identities=21% Similarity=0.158 Sum_probs=68.0
Q ss_pred HHHHHhhCCCEEEEEc--ChHHHHHHhCCCCCccEEEEcCCCCCCCHH-----HHHHHHHhccccccccccccccchhhh
Q 001676 902 AAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIEAY 974 (1033)
Q Consensus 902 l~~~L~~~g~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~-----ea~~~IR~~e~~~~~~~~~g~~~~~~~ 974 (1033)
+.+.|-+.||.|.... |..-|-++. .- =-.++|=+--|.-+|. ..++.|++
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~rLe-d~--Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e------------------- 186 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKHLE-DI--GCATVMPLGSPIGSGQGLQNLLNLQIIIE------------------- 186 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHH-Hc--CCeEEeeccCcccCCCCCCCHHHHHHHHH-------------------
Confidence 4556667899998654 444444433 21 2457788888876653 45666665
Q ss_pred cccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHh
Q 001676 975 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVSR 1023 (1033)
Q Consensus 975 ~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~v~r 1023 (1033)
...+|||.=.+-...++..++++.|+|+.+ .|--++.++..+++.
T Consensus 187 ----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~ 236 (267)
T CHL00162 187 ----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKL 236 (267)
T ss_pred ----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHH
Confidence 236899999999999999999999999985 577777777776653
No 292
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=39.82 E-value=3.1e+02 Score=25.41 Aligned_cols=20 Identities=10% Similarity=0.376 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhHHh
Q 001676 428 KKAEAADVAKSQFLATVSHE 447 (1033)
Q Consensus 428 ~~ae~a~~aKs~Fla~vSHE 447 (1033)
++..+..+.|..|+.+|-..
T Consensus 61 ~r~rES~~Er~K~~~s~~~~ 80 (121)
T PF10669_consen 61 KRNRESKRERQKFIWSMNKQ 80 (121)
T ss_pred HHhhhhHHHHHhHHhhhhHH
Confidence 34445566777888877544
No 293
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=39.10 E-value=2.6e+02 Score=31.16 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=59.0
Q ss_pred ChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHH
Q 001676 918 RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 997 (1033)
Q Consensus 918 ~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~ 997 (1033)
....+.+.+. ...||.|++|++=-..|--++...||.... ..++.++=....+.....
T Consensus 27 ~sp~~~E~~a-~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~---------------------~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 27 TTSYMAEIAA-TSGYDWLLIDGEHAPNTIQDLYHQLQAIAP---------------------YASQPVIRPVEGSKPLIK 84 (267)
T ss_pred CCcHHHHHHH-HcCCCEEEEccccCCCCHHHHHHHHHHHHh---------------------cCCCeEEECCCCCHHHHH
Confidence 3445566553 346999999999988888888888887431 123344455667889999
Q ss_pred HHHHcCCCEEEeCCCC-HHHHHHHHH
Q 001676 998 ECLRSGMDGYVSKPFE-AEQLYREVS 1022 (1033)
Q Consensus 998 ~~l~aG~ddyl~KP~~-~~~L~~~v~ 1022 (1033)
+++++|+++.+.-=++ .++..+.++
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 9999999999986664 455555554
No 294
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.07 E-value=2.7e+02 Score=30.47 Aligned_cols=90 Identities=14% Similarity=0.016 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhCCCEEEEEcCh---HHHHHHhCCCCCccEEEEcCCCCCCC------HHHHHHHHHhccccccccccccc
Q 001676 898 NLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMD------GFEATKIIREMEHNFNNRIRRGE 968 (1033)
Q Consensus 898 n~~vl~~~L~~~g~~v~~a~~g---~eAl~~l~~~~~~DlIlmDi~MP~md------G~ea~~~IR~~e~~~~~~~~~g~ 968 (1033)
....+...++++|..+..+-+. .+.++.+. ....++++| -.+|+-. -.+.++++|++-
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~----------- 183 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV----------- 183 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc-----------
Confidence 3455677888899877766544 34445442 244677778 4566632 234566666531
Q ss_pred cchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCC
Q 001676 969 VSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 1011 (1033)
Q Consensus 969 ~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP 1011 (1033)
...||++=.+-...++..++.++|+|+++.--
T Consensus 184 -----------~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 184 -----------GNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred -----------CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 12465533333378899999999999998764
No 295
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=39.05 E-value=85 Score=34.35 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.8
Q ss_pred CCcEEEEccCCc------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 001676 981 HVPILAMTADVI------QATYEECLRSGMDGYVSKPFEAEQLYREVS 1022 (1033)
Q Consensus 981 ~iPIIalTa~~~------~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1022 (1033)
.+|+++|+-... +....+|.++|+|+.+.-....+++...+.
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 578888887443 667888999999999984444455444433
No 296
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=38.88 E-value=1.7e+02 Score=30.62 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=54.7
Q ss_pred HhhCCCE-EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcE
Q 001676 906 LKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPI 984 (1033)
Q Consensus 906 L~~~g~~-v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPI 984 (1033)
.+.+|.. +.-+.+..|+.+... ..+|.|-++- ++.. |.+..+.+++. .+++|+
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~--~Gad~i~~~p-~~~~-g~~~~~~l~~~----------------------~~~~p~ 146 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALE--LGADIVKLFP-AEAV-GPAYIKALKGP----------------------FPQVRF 146 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHH--CCCCEEEEcC-Cccc-CHHHHHHHHhh----------------------CCCCeE
Confidence 3334443 334558888888763 5689998864 4444 99999998752 235788
Q ss_pred EEEccCCcHHHHHHHHHcCCCEEEeC
Q 001676 985 LAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 985 IalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
++.-+- ..+...+++++|++....-
T Consensus 147 ~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 147 MPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred EEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 876654 8899999999999886543
No 297
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=38.76 E-value=2.3e+02 Score=28.52 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=69.4
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcC-cE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLG-IQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~G-i~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+++++|+++..+......+...+ +. +..+.+..+++..... ..++.+++|......+ .......++....
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---~~~~~~~l~~~~~- 76 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMN---GLDVIPQLHQRWP- 76 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHCC-
Confidence 4679999999999888888887764 55 3467777777765433 3467777775543221 2233444443221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
...++++.............. .+...++.||.....+...+...+.
T Consensus 77 -~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 77 -AMNILVLTARQEEHMASRTLA-AGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred -CCcEEEEeCCCCHHHHHHHHH-hCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 223334433222111111111 2456789999999998888877654
No 298
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=38.62 E-value=1.1e+02 Score=34.00 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=59.2
Q ss_pred eEEEEeCCHHHHHHHHHHHhh----CCCE---EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKR----YGAA---VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 960 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~----~g~~---v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~ 960 (1033)
-|||=|.+-...--+...+++ .++. -+.+++-+|+.+.+. ..+|+|++|- |+.-.=-++.+.++.
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~--agaDiImLDN-m~~e~~~~av~~l~~----- 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE--AGADIIMLDN-MSPEELKEAVKLLGL----- 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH--cCCCEEEecC-CCHHHHHHHHHHhcc-----
Confidence 355555554444435555553 3553 346789999999884 4699999994 433222223333210
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEE
Q 001676 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGY 1007 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddy 1007 (1033)
..-.++-.|+....+...+..+.|+|-+
T Consensus 232 -------------------~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 232 -------------------AGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred -------------------CCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 1135788999999999999999999854
No 299
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=38.40 E-value=1.9e+02 Score=36.43 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=61.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHH-HHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccc
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK-ATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRI 964 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~e-Al~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~ 964 (1033)
+..+.++|.|+...+.+ ++.|+.+...+-.+. .++.. .-++.|+++.-..=++.+ ..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~a-gi~~A~~vvv~~~d~~~n-~~i~~~ar~~-------- 488 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDPQTS-LQLVELVKEH-------- 488 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhc-CCCcCCEEEEEeCCHHHH-HHHHHHHHHh--------
Confidence 44689999998765444 457888877664443 34433 334688888776444333 5566777763
Q ss_pred cccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE
Q 001676 965 RRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 965 ~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
+++++|++-+.+ .+...+..++|+|..+
T Consensus 489 --------------~p~~~iiaRa~d--~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 --------------FPHLQIIARARD--VDHYIRLRQAGVEKPE 516 (621)
T ss_pred --------------CCCCeEEEEECC--HHHHHHHHHCCCCEEe
Confidence 346788876644 5667778899999764
No 300
>PRK10651 transcriptional regulator NarL; Provisional
Probab=38.21 E-value=2.3e+02 Score=28.81 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=70.9
Q ss_pred CcEEEEECCchhhHHHHHHHHHHc-CcE-EEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~-Gi~-v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1033)
..+++++|+++.........+... ++. +..+.+..+++..+.. ..++.+++|....... .......++....
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~---~~~~~~~l~~~~~- 79 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMN---GLETLDKLREKSL- 79 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCc---HHHHHHHHHHhCC-
Confidence 357899999998888888888765 454 4467888888877644 3467788776543322 2234444443221
Q ss_pred CCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 816 ~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
...++++............. ..+...++.||.....+...+..++.
T Consensus 80 -~~~vi~l~~~~~~~~~~~~~-~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 80 -SGRIVVFSVSNHEEDVVTAL-KRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred -CCcEEEEeCCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 22333333222211111111 12456789999999999998888774
No 301
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=38.13 E-value=99 Score=32.53 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=40.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCC--EEE-EEcChHHHHHHhCCCCCccEEEEcCCC
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPPHQFDACFMDIQM 941 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~M 941 (1033)
.++++||-|.....+++.-++..|. .+. ...|...++..+.....||+||+|-=-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy 124 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPY 124 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCC
Confidence 5799999999999999998888772 333 334555777776544459999999633
No 302
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.66 E-value=1.2e+02 Score=34.12 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=49.3
Q ss_pred EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001676 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+||.+.+. ...|+|.+| +|+.-+=-++.+.+|+. .++ ..+..++..
T Consensus 202 IeVEv~tl~ea~eal~--~gaDiI~LD-nm~~e~vk~av~~~~~~----------------------~~~-v~ieaSGGI 255 (289)
T PRK07896 202 CEVEVDSLEQLDEVLA--EGAELVLLD-NFPVWQTQEAVQRRDAR----------------------APT-VLLESSGGL 255 (289)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEeC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 4556789999999884 468999999 45422222333333321 123 367889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001676 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|.+.
T Consensus 256 ~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 256 TLDTAAAYAETGVDYLA 272 (289)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998664
No 303
>PRK10742 putative methyltransferase; Provisional
Probab=36.99 E-value=3.8e+02 Score=29.59 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhC------CC----EEE-EEcChHHHHHHhCCCCCccEEEEcCCCCCCC
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRY------GA----AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD 945 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~------g~----~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~md 945 (1033)
|.+|..||-++....+++.-|++. +. .+. ...|..+.+... ...||+|++|-.-|.-.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCCcEEEECCCCCCCc
Confidence 567999999999999999999984 21 122 235556666654 23699999999988754
No 304
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.30 E-value=2.4e+02 Score=27.70 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001676 92 WLLFWTLVSLWIFWYMSSQATEKRR-----EALGSMCDERARMLQDQFNVSMNHVQAMS 145 (1033)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 145 (1033)
-+++|+++.++|..........+.+ +.....-|+--+-|-+-|+.+-..+-.|+
T Consensus 14 gLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~ 72 (138)
T COG3105 14 GLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLA 72 (138)
T ss_pred HHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999988877666554222 34445555555566666666555555554
No 305
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=35.82 E-value=2.7e+02 Score=28.46 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=48.7
Q ss_pred CCCEEEEE-cChHHHHHHhCCCCCccEEEEcCCCC--------CCCHHHHHHHHHhccccccccccccccchhhhcccCC
Q 001676 909 YGAAVVCV-ERGKKATELLMPPHQFDACFMDIQMP--------EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSN 979 (1033)
Q Consensus 909 ~g~~v~~a-~~g~eAl~~l~~~~~~DlIlmDi~MP--------~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~ 979 (1033)
.+..+-.. .+..++.+.. ...+|.|+.+.--| .-.|.+..+++++.
T Consensus 94 ~~~~~g~~~~t~~~~~~~~--~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 148 (196)
T cd00564 94 PDLIIGVSTHSLEEALRAE--ELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL----------------------- 148 (196)
T ss_pred CCCEEEeeCCCHHHHHHHh--hcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----------------------
Confidence 34444332 4555665554 23589998764333 23456777777752
Q ss_pred CCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 980 FHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 980 ~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.++||++.-+- ..+...++.++|+|++..
T Consensus 149 ~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 149 VEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 25899988765 568899999999998854
No 306
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.57 E-value=3.6e+02 Score=28.87 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=52.6
Q ss_pred HHHHhhCCCEEEEE-cChHHHHHHhCCCCCccEEEEcCCCCC-------CCHHHHHHHHHhccccccccccccccchhhh
Q 001676 903 AAGLKRYGAAVVCV-ERGKKATELLMPPHQFDACFMDIQMPE-------MDGFEATKIIREMEHNFNNRIRRGEVSIEAY 974 (1033)
Q Consensus 903 ~~~L~~~g~~v~~a-~~g~eAl~~l~~~~~~DlIlmDi~MP~-------mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~ 974 (1033)
...+++.+..+... .+..++.... + ...|.|..|-.-++ ...++.++++++.
T Consensus 95 ~~~~~~~~i~~i~~v~~~~~~~~~~-~-~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~------------------ 154 (236)
T cd04730 95 VERLKAAGIKVIPTVTSVEEARKAE-A-AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA------------------ 154 (236)
T ss_pred HHHHHHcCCEEEEeCCCHHHHHHHH-H-cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH------------------
Confidence 34445556554433 3445544433 2 45788877542111 2456777887752
Q ss_pred cccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeC
Q 001676 975 ENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSK 1010 (1033)
Q Consensus 975 ~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~K 1010 (1033)
..+||++.-+-...++..+++++|+|+.+.-
T Consensus 155 -----~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 -----VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred -----hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 1479998877777789999999999988754
No 307
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=35.44 E-value=2.3e+02 Score=27.23 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhCCCEEEEEc--ChHHHHHHhCCCCCccEEEEcCCCCCC-CHHHHHHHHHhccccccccccccccchhhh
Q 001676 898 NLKVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEM-DGFEATKIIREMEHNFNNRIRRGEVSIEAY 974 (1033)
Q Consensus 898 n~~vl~~~L~~~g~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~m-dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~ 974 (1033)
-...+..+|++.|+.+.... .-++.++.+.....||+|.+.+.-+.. ...++++.||+.
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~------------------ 65 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV------------------ 65 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHH------------------
Confidence 45678889999998877654 334445555332679999998854443 345677778763
Q ss_pred cccCCCCCcEEEEccCCcHHHHHH-HHHcCCCEEEeCCCCHHHHHHHHHhh
Q 001676 975 ENVSNFHVPILAMTADVIQATYEE-CLRSGMDGYVSKPFEAEQLYREVSRF 1024 (1033)
Q Consensus 975 ~~~~~~~iPIIalTa~~~~~~~~~-~l~aG~ddyl~KP~~~~~L~~~v~r~ 1024 (1033)
.++++|++--..... ..+. ....++| |+..=--...+.+.++.+
T Consensus 66 ----~p~~~iv~GG~~~t~-~p~~~~~~~~~D-~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 66 ----LPNVIVVVGGPHATF-FPEEILEEPGVD-FVVIGEGEETFLKLLEEL 110 (127)
T ss_pred ----CCCCEEEECCcchhh-CHHHHhcCCCCC-EEEECCcHHHHHHHHHHH
Confidence 235666654444332 2233 2345565 555433334555555544
No 308
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.22 E-value=93 Score=26.45 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 001676 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487 (1033)
Q Consensus 440 Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~ 487 (1033)
-+...-||+.+=|..|.|++++ ...++..+|++.+....+....
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999985 2223456777776666655533
No 309
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.06 E-value=5.2e+02 Score=26.63 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=73.1
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeEeecHHHHHHHH
Q 001676 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519 (1033)
Q Consensus 440 Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndlLd~skiesg~l~l~~~~~dL~~ll~~v 519 (1033)
+.+.+.||+=.|..+|..-+++|.+..-+ .+-++.|..++..+. +.|.|+|+--|.---.-..+|-.+.=+-+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~ad---dDAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGAD---DDAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCcc---HHHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 45679999999999999999999876554 455666777766654 56789998766544333456655543333
Q ss_pred HHHHHhhhhccCcEEEEEeCCCCCceEEecHHHHHHHHHHHHHHHHhccCCCe-EEEEE
Q 001676 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTV 577 (1033)
Q Consensus 520 ~~~~~~~a~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl~NAiKfT~~G~-I~v~v 577 (1033)
.+.|. .+| -++.-+. |..+ ..+.+. ..+.||+-=|--.-+.|+ +.+++
T Consensus 91 ~~~~a---~ek-pe~~W~g----~r~~-~~Kn~v-kllLNl~lia~~aiPrGG~~~vtl 139 (214)
T COG5385 91 QDFFA---NEK-PELTWNG----PRAI-LPKNRV-KLLLNLFLIAYGAIPRGGSLVVTL 139 (214)
T ss_pred HHHHh---ccC-CcccccC----Chhh-cCcchH-HHHHHHHHHHcccCCCCCeeEEEe
Confidence 33332 222 3333222 2111 133333 457788877777777654 44443
No 310
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.43 E-value=1.2e+02 Score=34.86 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=44.5
Q ss_pred HHHHHHhCCCCCccEEEEcCCCCCCCH-HHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHH
Q 001676 920 KKATELLMPPHQFDACFMDIQMPEMDG-FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE 998 (1033)
Q Consensus 920 ~eAl~~l~~~~~~DlIlmDi~MP~mdG-~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~ 998 (1033)
+++.+++...-..|+|.+|+.-|..+. .|++++||+. .+.+|||+=.. .+.++...
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~----------------------~p~~~vi~g~V-~t~e~a~~ 156 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH----------------------LPETFVIAGNV-GTPEAVRE 156 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh----------------------CCCCeEEEEec-CCHHHHHH
Confidence 555566532113599999999865443 4567777762 33577777322 26788899
Q ss_pred HHHcCCCEEE
Q 001676 999 CLRSGMDGYV 1008 (1033)
Q Consensus 999 ~l~aG~ddyl 1008 (1033)
+.++|+|...
T Consensus 157 l~~aGad~i~ 166 (326)
T PRK05458 157 LENAGADATK 166 (326)
T ss_pred HHHcCcCEEE
Confidence 9999999965
No 311
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=34.24 E-value=1.3e+02 Score=32.24 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=46.0
Q ss_pred HHHHHHhCCCCCcc-EEEEcCCCCCC-CH--HHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHH
Q 001676 920 KKATELLMPPHQFD-ACFMDIQMPEM-DG--FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQAT 995 (1033)
Q Consensus 920 ~eAl~~l~~~~~~D-lIlmDi~MP~m-dG--~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~ 995 (1033)
.+..+.+. ...++ ++++|+..-++ .| ++.++++++. ..+|||+-.+-.+.++
T Consensus 149 ~e~~~~~~-~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----------------------~~ipvia~GGi~~~~d 204 (233)
T PRK00748 149 EDLAKRFE-DAGVKAIIYTDISRDGTLSGPNVEATRELAAA-----------------------VPIPVIASGGVSSLDD 204 (233)
T ss_pred HHHHHHHH-hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 34444442 23455 77777754222 33 6778888752 2489999999999999
Q ss_pred HHHHHHcC-CCEEEe
Q 001676 996 YEECLRSG-MDGYVS 1009 (1033)
Q Consensus 996 ~~~~l~aG-~ddyl~ 1009 (1033)
..++++.| +++.+.
T Consensus 205 i~~~~~~g~~~gv~v 219 (233)
T PRK00748 205 IKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHcCCccEEEE
Confidence 99999998 999875
No 312
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.98 E-value=2.8e+02 Score=31.03 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=47.8
Q ss_pred EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCc
Q 001676 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 992 (1033)
Q Consensus 913 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~ 992 (1033)
.+.+++-+||.+.+. ..+|+|.+|= | + ++.++++-++.+. ..+++ +|..++..+
T Consensus 186 ~VEv~tleea~~A~~--~GaDiI~LDn-~---~-~e~l~~~v~~~~~------------------~~~~~-~ieAsGgIt 239 (273)
T PRK05848 186 EIECESLEEAKNAMN--AGADIVMCDN-M---S-VEEIKEVVAYRNA------------------NYPHV-LLEASGNIT 239 (273)
T ss_pred EEEeCCHHHHHHHHH--cCCCEEEECC-C---C-HHHHHHHHHHhhc------------------cCCCe-EEEEECCCC
Confidence 446789999999883 5689999884 3 3 3444443332110 11233 577788889
Q ss_pred HHHHHHHHHcCCCEEEe
Q 001676 993 QATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 993 ~~~~~~~l~aG~ddyl~ 1009 (1033)
.+...++.+.|+|.+.+
T Consensus 240 ~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 240 LENINAYAKSGVDAISS 256 (273)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 99999999999987653
No 313
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.98 E-value=1.3e+02 Score=33.95 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=45.8
Q ss_pred EEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCc
Q 001676 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI 992 (1033)
Q Consensus 913 v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~ 992 (1033)
-..++|.+||.+.+. ..+|+|.+| +|...+=-++.+.+|+. .+++| +..++...
T Consensus 200 ~VEv~tleea~eA~~--~GaD~I~LD-n~~~e~l~~av~~~~~~----------------------~~~i~-leAsGGIt 253 (288)
T PRK07428 200 EVETETLEQVQEALE--YGADIIMLD-NMPVDLMQQAVQLIRQQ----------------------NPRVK-IEASGNIT 253 (288)
T ss_pred EEECCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHHHHhc----------------------CCCeE-EEEECCCC
Confidence 345688999999883 568999999 33322212233333321 23455 45567778
Q ss_pred HHHHHHHHHcCCCEEE
Q 001676 993 QATYEECLRSGMDGYV 1008 (1033)
Q Consensus 993 ~~~~~~~l~aG~ddyl 1008 (1033)
.+...+..+.|+|...
T Consensus 254 ~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 254 LETIRAVAETGVDYIS 269 (288)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 9999999999998765
No 314
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.76 E-value=3.4e+02 Score=29.07 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=44.0
Q ss_pred HHHHHhCCCCCcc-EEEEcCCCCCC---CHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHH
Q 001676 921 KATELLMPPHQFD-ACFMDIQMPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 996 (1033)
Q Consensus 921 eAl~~l~~~~~~D-lIlmDi~MP~m---dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~ 996 (1033)
+.++.+. ....| ++++|+..-++ --+++++++++. ..+||++--+-.+.++.
T Consensus 150 ~~~~~~~-~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvi~~GGi~~~~di 205 (234)
T cd04732 150 ELAKRFE-ELGVKAIIYTDISRDGTLSGPNFELYKELAAA-----------------------TGIPVIASGGVSSLDDI 205 (234)
T ss_pred HHHHHHH-HcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----------------------cCCCEEEecCCCCHHHH
Confidence 4444442 23344 55777643222 126777887752 25899999999999999
Q ss_pred HHHHHcCCCEEEe
Q 001676 997 EECLRSGMDGYVS 1009 (1033)
Q Consensus 997 ~~~l~aG~ddyl~ 1009 (1033)
.++++.|+|+.+.
T Consensus 206 ~~~~~~Ga~gv~v 218 (234)
T cd04732 206 KALKELGVAGVIV 218 (234)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999764
No 315
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=33.36 E-value=1e+02 Score=31.93 Aligned_cols=72 Identities=25% Similarity=0.224 Sum_probs=47.5
Q ss_pred EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001676 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+|+.+.+. ..+|.|.+|=.-| -+=-++.+.++.. .++ ..|.+++..
T Consensus 83 I~VEv~~~ee~~ea~~--~g~d~I~lD~~~~-~~~~~~v~~l~~~----------------------~~~-v~ie~SGGI 136 (169)
T PF01729_consen 83 IEVEVENLEEAEEALE--AGADIIMLDNMSP-EDLKEAVEELREL----------------------NPR-VKIEASGGI 136 (169)
T ss_dssp EEEEESSHHHHHHHHH--TT-SEEEEES-CH-HHHHHHHHHHHHH----------------------TTT-SEEEEESSS
T ss_pred EEEEcCCHHHHHHHHH--hCCCEEEecCcCH-HHHHHHHHHHhhc----------------------CCc-EEEEEECCC
Confidence 3446788889988884 4599999996443 2222333333332 123 688899999
Q ss_pred cHHHHHHHHHcCCCEEEe
Q 001676 992 IQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl~ 1009 (1033)
..+...+..+.|+|.+.+
T Consensus 137 ~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVISV 154 (169)
T ss_dssp STTTHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHhcCCCEEEc
Confidence 999999999999987753
No 316
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=33.35 E-value=3.2e+02 Score=30.12 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=60.1
Q ss_pred cChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHH
Q 001676 917 ERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATY 996 (1033)
Q Consensus 917 ~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~ 996 (1033)
.....+.+.+. ...||.|++|++=-.+|--++...||..+. ..++.++=....+....
T Consensus 20 ~~sp~~~e~~a-~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~---------------------~g~~~~VRvp~~~~~~i 77 (249)
T TIGR03239 20 LGNPITTEVLG-LAGFDWLLLDGEHAPNDVLTFIPQLMALKG---------------------SASAPVVRPPWNEPVII 77 (249)
T ss_pred CCCcHHHHHHH-hcCCCEEEEecccCCCCHHHHHHHHHHHhh---------------------cCCCcEEECCCCCHHHH
Confidence 34445666664 356999999999999998888888887431 12333444466788999
Q ss_pred HHHHHcCCCEEEeCCC-CHHHHHHHHH
Q 001676 997 EECLRSGMDGYVSKPF-EAEQLYREVS 1022 (1033)
Q Consensus 997 ~~~l~aG~ddyl~KP~-~~~~L~~~v~ 1022 (1033)
.+++++|+++.+.-=+ +.++..+.++
T Consensus 78 ~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 78 KRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 9999999999987555 5566666654
No 317
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=32.77 E-value=1.6e+02 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=26.0
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 981 HVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.+|||+.-.-.+.++..+++++|+|+...
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 48999999889999999999999998864
No 318
>PRK11677 hypothetical protein; Provisional
Probab=32.67 E-value=2.6e+02 Score=27.81 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001676 89 LITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIST 150 (1033)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~ 150 (1033)
.++.+++|+++++++..+..... +.+..+...-++-...|.++=+...+|+.--|-|+..
T Consensus 6 a~i~livG~iiG~~~~R~~~~~~--~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~ 65 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRKL--RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDT 65 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447788888888777765554 3334555666666666666667777777777777655
No 319
>PRK10403 transcriptional regulator NarP; Provisional
Probab=32.42 E-value=3e+02 Score=27.90 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=68.9
Q ss_pred cEEEEECCchhhHHHHHHHHHH-cCcEEE-EecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~-~Gi~v~-~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
.+++++|+++.........+.. .+..+. .+.+..+++..+.. ..++.+++|......+ ....+..++....
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---~~~~~~~l~~~~~-- 79 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMS---GLDTLNALRRDGV-- 79 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCc---HHHHHHHHHHhCC--
Confidence 5789999999888777777865 577764 57788888776543 3577888876543322 2234444443221
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHh
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l 862 (1033)
...++++............ -..+...++.||.....+...+...+
T Consensus 80 ~~~ii~l~~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~ 124 (215)
T PRK10403 80 TAQIIILTVSDASSDVFAL-IDAGADGYLLKDSDPEVLLEAIRAGA 124 (215)
T ss_pred CCeEEEEeCCCChHHHHHH-HHcCCCeEEecCCCHHHHHHHHHHHh
Confidence 1223333322111111111 11256678999999988888887765
No 320
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=31.77 E-value=1.2e+02 Score=33.65 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.2
Q ss_pred CCcEEEEccC------CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 001676 981 HVPILAMTAD------VIQATYEECLRSGMDGYVSKPFEAEQLYREV 1021 (1033)
Q Consensus 981 ~iPIIalTa~------~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v 1021 (1033)
.+|++.||=. ..+....+|.++|+|+.+.--...++....+
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~ 137 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLI 137 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHH
Confidence 5798888855 3466789999999999999776666655443
No 321
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=31.77 E-value=4.4e+02 Score=30.22 Aligned_cols=103 Identities=20% Similarity=0.190 Sum_probs=64.8
Q ss_pred eCCHHHHHHHHHHHhhCCCEE--EEEcChHHHHHHhCCCCCccEEEEcCCCCCCCH-----HHHHHHHHhcccccccccc
Q 001676 893 DDNNVNLKVAAAGLKRYGAAV--VCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIREMEHNFNNRIR 965 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v--~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-----~ea~~~IR~~e~~~~~~~~ 965 (1033)
.|.....+..+ .|-+.|+.| .|++|...|-.+.. -.+ +.+|=+--|.-.| -+.++.+++.
T Consensus 181 pd~~~~v~aa~-~L~~~Gf~v~~yc~~d~~~a~~l~~--~g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~--------- 247 (326)
T PRK11840 181 PDMVETLKATE-ILVKEGFQVMVYCSDDPIAAKRLED--AGA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------- 247 (326)
T ss_pred cCHHHHHHHHH-HHHHCCCEEEEEeCCCHHHHHHHHh--cCC-EEEeeccccccCCCCCCCHHHHHHHHHc---------
Confidence 33333334333 344569987 57777777766652 233 5555433333322 4556666542
Q ss_pred ccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHH
Q 001676 966 RGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV-----SKPFEAEQLYREVS 1022 (1033)
Q Consensus 966 ~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L~~~v~ 1022 (1033)
..+|||.=.+-...++..++++.|+|+.+ .|-=++-.+.++.+
T Consensus 248 --------------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 248 --------------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred --------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence 35899988899999999999999999986 45556666655554
No 322
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=31.66 E-value=2.5e+02 Score=30.64 Aligned_cols=84 Identities=21% Similarity=0.097 Sum_probs=53.6
Q ss_pred HHHHHHHhhCCCEEEEEc--ChHHHHHHhCCCCCccEEEEcCCCCCCCHH-----HHHHHHHhccccccccccccccchh
Q 001676 900 KVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEMDGF-----EATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 900 ~vl~~~L~~~g~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~-----ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
-...+.|-+.||.|.... |.--|-++.. - =-.++|=+--|.-+|. ..++.|++.
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~D~v~akrL~d--~-GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~---------------- 173 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYCTDDPVLAKRLED--A-GCAAVMPLGSPIGSGRGIQNPYNLRIIIER---------------- 173 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HHHHHHHHH--T-T-SEBEEBSSSTTT---SSTHHHHHHHHHH----------------
T ss_pred HHHHHHHHHCCCEEeecCCCCHHHHHHHHH--C-CCCEEEecccccccCcCCCCHHHHHHHHHh----------------
Confidence 345567778999988544 4444444331 1 1346788888877663 466777652
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
..+|||+=.+-...++..++++.|+|+.+.
T Consensus 174 -------~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 174 -------ADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp -------GSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred -------cCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 158999999999999999999999999985
No 323
>PRK00811 spermidine synthase; Provisional
Probab=31.64 E-value=1.9e+02 Score=32.37 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=40.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCC------CEE-EEEcChHHHHHHhCCCCCccEEEEcCCCCC
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYG------AAV-VCVERGKKATELLMPPHQFDACFMDIQMPE 943 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g------~~v-~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~ 943 (1033)
.+|.+||=++...+.++..+...+ -.+ ....|+.+-+.. ....||+|++|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCCCCC
Confidence 479999999999999999886532 223 345677766654 2467999999986664
No 324
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=31.08 E-value=1.1e+02 Score=32.03 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
|||||.....-.-+..+|++.|+.+....+....++.+. ...||.|++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE-ALLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH-hcCCCEEEE
Confidence 899999999999999999999999888775432222232 235785555
No 325
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=30.85 E-value=4.6e+02 Score=27.73 Aligned_cols=116 Identities=6% Similarity=0.019 Sum_probs=68.7
Q ss_pred EEEEECCchhhHHHHHHHHHHcCc---EEEEecCHHHHHHHHhcCCccceEEEeecc--ccccCccchHHHHHHHhhcCC
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQE--VWEKDTSVSTLFVNNLRKLGC 814 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi---~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~ 814 (1033)
.++++|+++..+...+..|...+. .+..+++..++++.+.. ..++.+++|.. +..+ +. ....+.+++..+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~--~g-~~~i~~i~~~~p 76 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDA--SN-SQRIKQIINQHP 76 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCC--Ch-HHHHHHHHHHCC
Confidence 478999999999988888887553 34567888888876643 34688999944 3222 21 235555554332
Q ss_pred CCCceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 815 ~~~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
..+++++............... ....++.|+.....+...+..+..
T Consensus 77 --~~~iivlt~~~~~~~~~~~~~~-~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 77 --NTLFIVFMAIANIHFDEYLLVR-KNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred --CCeEEEEECCCchhHHHHHHHH-hhceeeeccCCHHHHHHHHHHHHc
Confidence 2455555432211110000000 000145789899999988888775
No 326
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=30.72 E-value=3.1e+02 Score=28.42 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=47.4
Q ss_pred EEcChHHHHHHhCCCCCccEEEEcCCCC--------CCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEE
Q 001676 915 CVERGKKATELLMPPHQFDACFMDIQMP--------EMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILA 986 (1033)
Q Consensus 915 ~a~~g~eAl~~l~~~~~~DlIlmDi~MP--------~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIa 986 (1033)
.+.+..++.+.. +...|+|+.+--.| ...|.+..+.+.+. .+.+||++
T Consensus 102 s~h~~~e~~~a~--~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~----------------------~~~~pv~a 157 (196)
T TIGR00693 102 STHNLEELAEAE--AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT----------------------SIDIPIVA 157 (196)
T ss_pred eCCCHHHHHHHh--HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh----------------------cCCCCEEE
Confidence 455666665543 34689998765443 22478888888752 12478888
Q ss_pred EccCCcHHHHHHHHHcCCCEEEe
Q 001676 987 MTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 987 lTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+-+- ..+...+++++|++++..
T Consensus 158 ~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 158 IGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred ECCc-CHHHHHHHHHcCCCEEEE
Confidence 7554 578888999999998753
No 327
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=30.33 E-value=8.4e+02 Score=29.32 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001676 390 STSIGILVIASLVGHIFQATV-----NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPM 452 (1033)
Q Consensus 390 ~~~i~~lvi~~l~~~i~~~~~-----~r~~~~~~~~~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPL 452 (1033)
..++.++++.+++.++++..+ .|..++.+...+..+.+++++++...-.+-++....|-+.=+
T Consensus 6 ~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii 73 (445)
T PRK13428 6 GQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVV 73 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333 333444444444444444444444433344555544444333
No 328
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=30.06 E-value=2e+02 Score=27.22 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=42.4
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcCCCCCCC-HHHHHHHHHh
Q 001676 893 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD-GFEATKIIRE 955 (1033)
Q Consensus 893 DDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~md-G~ea~~~IR~ 955 (1033)
|-++.....+..+|++.|+++.... ...+.++.+. ..+||+|.+.+.+.... .++.++++++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~-~~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK-EEDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH-HcCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 5566777889999999999998764 3344444443 46799999998775532 3444555554
No 329
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=29.98 E-value=1.2e+02 Score=34.33 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=39.5
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHHhhCCCC
Q 001676 981 HVPILAMTADVIQATYEECLRSGMDGY------VSKPFEAEQLYREVSRFFPPI 1028 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~ddy------l~KP~~~~~L~~~v~r~~~~~ 1028 (1033)
.+|||++..-.+.++..+++.+|+|.. +..|.-..++.+.+.+|+..+
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 589999999999999999999999743 457877788888887776543
No 330
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.61 E-value=1.8e+02 Score=32.82 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=51.0
Q ss_pred EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001676 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-++|.+.+. ..+|+|++| +|+..+=-++.+.+++. .++ .++..++..
T Consensus 192 IeVEv~tleqa~ea~~--agaDiI~LD-n~~~e~l~~av~~~~~~----------------------~~~-~~leaSGGI 245 (284)
T PRK06096 192 IVVEADTPKEAIAALR--AQPDVLQLD-KFSPQQATEIAQIAPSL----------------------APH-CTLSLAGGI 245 (284)
T ss_pred EEEECCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHHhhcc----------------------CCC-eEEEEECCC
Confidence 4556789999999884 469999999 55544444444444421 112 478899999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001676 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-..
T Consensus 246 ~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 246 NLNTLKNYADCGIRLFI 262 (284)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998754
No 331
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=29.39 E-value=3.5e+02 Score=29.68 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=33.6
Q ss_pred CCcEEEEccCCcHHHHHHHHHcC-CCEEEe------CCCCHHHHHHHHH
Q 001676 981 HVPILAMTADVIQATYEECLRSG-MDGYVS------KPFEAEQLYREVS 1022 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG-~ddyl~------KP~~~~~L~~~v~ 1022 (1033)
.+|||+.-+-.+.++..++++.| +|+.+. +=++.+++.+.++
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 58999999999999999999988 999554 4566666665554
No 332
>PRK13558 bacterio-opsin activator; Provisional
Probab=29.23 E-value=1.7e+02 Score=36.89 Aligned_cols=116 Identities=12% Similarity=0.145 Sum_probs=69.6
Q ss_pred cEEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCCCc
Q 001676 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (1033)
Q Consensus 739 ~~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1033)
.+++++|+++.........+...|+.+..+.+..+++..+.. ..++++++|..+...+ ....+..++.... ..|
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~---g~~~l~~l~~~~~-~~p 81 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFD---GLALLEAVRQTTA-VPP 81 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCc---HHHHHHHHHhcCC-CCC
Confidence 579999999998888888888899999999999999887653 4478888887654322 2335555554222 123
Q ss_pred eEEEEeccCCccccCcCCCCCCCCceeccCCchH--HHHHHHHHHh
Q 001676 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS--MLAASLQRAM 862 (1033)
Q Consensus 819 ~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s--~l~~~l~~~l 862 (1033)
.+ ++.............. .+...++.||.... .+...+...+
T Consensus 82 iI-~lt~~~~~~~~~~al~-~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 82 VV-VVPTAGDEAVARRAVD-ADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred EE-EEECCCCHHHHHHHHh-cCcceEEeccchhHHHHHHHHHHHhh
Confidence 33 3332221111111111 24456778886533 4444444444
No 333
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=29.01 E-value=2.9e+02 Score=27.90 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=40.3
Q ss_pred CCccEEEEcCCCCCCCHH-------HHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHc
Q 001676 930 HQFDACFMDIQMPEMDGF-------EATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRS 1002 (1033)
Q Consensus 930 ~~~DlIlmDi~MP~mdG~-------ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~a 1002 (1033)
...|.+.++...+...+. ...+.++. ...+||++..+-...++..+++++
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~pi~~~GGi~~~~~~~~~~~~ 191 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----------------------GSKVPVIAGGGINDPEDAAEALAL 191 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----------------------cCCCCEEEECCCCCHHHHHHHHHh
Confidence 457999888877755432 22333332 235899998887777999999999
Q ss_pred CCCEEEe
Q 001676 1003 GMDGYVS 1009 (1033)
Q Consensus 1003 G~ddyl~ 1009 (1033)
|+|.+..
T Consensus 192 Gad~v~v 198 (200)
T cd04722 192 GADGVIV 198 (200)
T ss_pred CCCEEEe
Confidence 9998864
No 334
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=28.93 E-value=51 Score=40.79 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhhHhhccCcccc
Q 001676 638 IVSVEDTGQGIPLEAQSRIFTPFMQ 662 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q 662 (1033)
.|+|+|+|.||++...+-+-.+++.
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhh
Confidence 4899999999999887766555543
No 335
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=28.56 E-value=1.1e+03 Score=28.57 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001676 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIS 149 (1033)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~ 149 (1033)
|++++.+++.+++++.++|.......+..++.+.+..+..+..+...++...+.+..++....
T Consensus 24 ~i~~~~~i~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (570)
T PRK15426 24 HVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDAQLQYNVDKLIFLRNGMR 86 (570)
T ss_pred eEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444445555556666666666777777777777777777777777777666665543
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.55 E-value=4.6e+02 Score=31.33 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=61.7
Q ss_pred CCeEEEEeCCHHHHHH----HHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCH--HHHHHHHHhcccc
Q 001676 886 GRKILIVDDNNVNLKV----AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG--FEATKIIREMEHN 959 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~v----l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG--~ea~~~IR~~e~~ 959 (1033)
|++|++++-+. .|.. +.......|..+..+.+..++.+.+. ...+|+||+|. |+..- .+.+++++++...
T Consensus 252 G~~V~Lit~Dt-~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 252 GKSVSLYTTDN-YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGSELILIDT--AGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred CCeEEEecccc-hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCCCEEEEeC--CCCCccCHHHHHHHHHHHHh
Confidence 56888888776 3333 33333445766666666666666664 36799999996 33211 1333444332110
Q ss_pred ccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHH----cCCCEEEeCCCC
Q 001676 960 FNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPFE 1013 (1033)
Q Consensus 960 ~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~----aG~ddyl~KP~~ 1013 (1033)
. +...+.-.+++++|....++..+..+ .|.++.|.-=+|
T Consensus 328 ~---------------~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLD 370 (432)
T PRK12724 328 F---------------GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370 (432)
T ss_pred h---------------cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEccc
Confidence 0 00112346788888887766666554 677777654343
No 337
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.49 E-value=5.1e+02 Score=28.89 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=56.4
Q ss_pred CeEEEEeCCHH---HHHHHHHHHhhCCCEEEEEcChH---HHHHHhCCCCCccEEEEcCCCCCCC--HHHHHHHHHhccc
Q 001676 887 RKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGK---KATELLMPPHQFDACFMDIQMPEMD--GFEATKIIREMEH 958 (1033)
Q Consensus 887 ~~ILIVDDn~~---n~~vl~~~L~~~g~~v~~a~~g~---eAl~~l~~~~~~DlIlmDi~MP~md--G~ea~~~IR~~e~ 958 (1033)
+++.+++-+.. ....++...+..|+.+..+.+.. ++++.+.....+|+||+|.- +.. .-+.++++++...
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~--Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA--GKNYRASETVEEMIETMG 181 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECC--CCCcCCHHHHHHHHHHHh
Confidence 45666655432 23344455556788888776653 44444433346999999973 322 2334455544211
Q ss_pred cccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHH----HHHcCCCEEEeCCCC
Q 001676 959 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE----CLRSGMDGYVSKPFE 1013 (1033)
Q Consensus 959 ~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~----~l~aG~ddyl~KP~~ 1013 (1033)
. ..+.-.+++++|.....+..+ .-..+.++.|.-=+|
T Consensus 182 ~------------------~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 182 Q------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred h------------------hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeec
Confidence 0 112234677777655443332 234677777654343
No 338
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.42 E-value=6.4e+02 Score=25.58 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH
Q 001676 390 STSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIR 449 (1033)
Q Consensus 390 ~~~i~~lvi~~l~~~i~~~~~~-----r~~~~~~~~~~~~e~~~~ae~a~~aKs~Fla~vSHELR 449 (1033)
..++.++++.+++.++++..+. |...+..+.....+.++++++....-.+-++..-.|-.
T Consensus 13 ~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~ 77 (164)
T PRK14471 13 WQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERD 77 (164)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445455444433 33344444444444454444443333334444444433
No 339
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.38 E-value=5.3e+02 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001676 394 GILVIASLVGHIFQA 408 (1033)
Q Consensus 394 ~~lvi~~l~~~i~~~ 408 (1033)
..+|+.+++|+++.+
T Consensus 13 igLvvGi~IG~li~R 27 (138)
T COG3105 13 IGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445554433
No 340
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=27.91 E-value=3.1e+02 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001676 388 AISTSIGILVIASLVGHIFQATVNRIA 414 (1033)
Q Consensus 388 ~~~~~i~~lvi~~l~~~i~~~~~~r~~ 414 (1033)
.+..++.++.+.+.+|..++..+..+.
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555555554443
No 341
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.62 E-value=3.8e+02 Score=30.43 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=58.4
Q ss_pred HHHHHhhCCCEEE-EEcChHHHHHHhCCCCCccEEEEcCC---C--CCCCHHHHHHHHHhccccccccccccccchhhhc
Q 001676 902 AAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQ---M--PEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYE 975 (1033)
Q Consensus 902 l~~~L~~~g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~---M--P~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~ 975 (1033)
+-..++..|..|. .+.+.++|..... ...|.|+..-. . ....-+++++++++.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~--~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~------------------- 159 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK--AGADAVIAEGMESGGHIGELTTMALVPQVVDA------------------- 159 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH--cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH-------------------
Confidence 4566777787654 4567777766653 46899887332 1 122337777888752
Q ss_pred ccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 976 NVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 976 ~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.++|||+--+-.+.++..+++..|+|+...
T Consensus 160 ----~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 160 ----VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred ----hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 148999998888999999999999998764
No 342
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=27.61 E-value=2.9e+02 Score=30.78 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=62.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEE-----EcChHHHHHHhCCCCCccEEEEcCCC---------CCCCH------
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVC-----VERGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 946 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~-----a~~g~eAl~~l~~~~~~DlIlmDi~M---------P~mdG------ 946 (1033)
-+||=+|-++.-.+.....-++.|..+.- -+-.+.-..++ +.+.||++++==+= -+++-
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 183 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI-EEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKY 183 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH-HHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHH
Confidence 48999999999998888888888766552 23334445555 56889998763211 01111
Q ss_pred -HHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCC
Q 001676 947 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005 (1033)
Q Consensus 947 -~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~d 1005 (1033)
.|+.+..|+.++.. . =+++-|-+-++..+..++|||+
T Consensus 184 FVeaVk~aR~y~~~~--------------------D--~LVIFAGACQS~yEall~AGAN 221 (283)
T TIGR02855 184 FVETVREARKYVPSL--------------------D--QLVIFAGACQSHFESLIRAGAN 221 (283)
T ss_pred HHHHHHHHHhcCCCc--------------------c--cEEEEcchhHHHHHHHHHcCcc
Confidence 35667777755421 1 1333456778899999999997
No 343
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=27.60 E-value=7.7e+02 Score=26.26 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001676 386 LLAISTSIGILVIASLVGHIFQATV-----NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMN 453 (1033)
Q Consensus 386 ~~~~~~~i~~lvi~~l~~~i~~~~~-----~r~~~~~~~~~~~~e~~~~ae~a~~aKs~Fla~vSHELRTPLn 453 (1033)
|..+..++.++++++++.++++..+ .|...+.+......+.+++++.....-.+-++..-.|-+.=++
T Consensus 49 ~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~ 121 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIID 121 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555554433 3334444444444444444444433333344444444443333
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=27.56 E-value=5.1e+02 Score=29.95 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=58.2
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHhhCCCEEEEEcChH-------HHHHHhCCCCCccEEEEcCCCCCC-CHHHHHHHHH
Q 001676 886 GRKILIVDDNN---VNLKVAAAGLKRYGAAVVCVERGK-------KATELLMPPHQFDACFMDIQMPEM-DGFEATKIIR 954 (1033)
Q Consensus 886 ~~~ILIVDDn~---~n~~vl~~~L~~~g~~v~~a~~g~-------eAl~~l~~~~~~DlIlmDi~MP~m-dG~ea~~~IR 954 (1033)
+.++++++-+. .....+.......|..+.....|. +|++... ...+|+||+|-- +.+ .-.+...+++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~-~~~~DvVLIDTa-Gr~~~~~~lm~eL~ 245 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK-ARGIDVVLIDTA-GRMHTDANLMDELK 245 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH-hCCCCEEEEECC-CccCCcHHHHHHHH
Confidence 45787777663 333445555666787776554432 4444443 356899999974 222 1234455555
Q ss_pred hccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHH--H--HcCCCEEEeCCCC
Q 001676 955 EMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEEC--L--RSGMDGYVSKPFE 1013 (1033)
Q Consensus 955 ~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~--l--~aG~ddyl~KP~~ 1013 (1033)
.+.. ...++.-++++.+....+....+ + ..|.++.|.-=+|
T Consensus 246 ~i~~------------------~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 246 KIVR------------------VTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HHHH------------------hhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 4311 01234456677665554444332 2 3688887654343
No 345
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=27.56 E-value=69 Score=33.83 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=37.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
|||||.+...-.-+...|++.|+++....+.+..++.+. ...||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE-NMKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh-hCCCCEEEE
Confidence 899999999999999999999999998877644344332 246888776
No 346
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.42 E-value=5.1e+02 Score=30.89 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=57.8
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHhhCCCEEEEEcChHHH---HHHhCCCCCccEEEEcCCCCCCCH--HHHHHHHHhcc
Q 001676 886 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG--FEATKIIREME 957 (1033)
Q Consensus 886 ~~~ILIVDDn~~---n~~vl~~~L~~~g~~v~~a~~g~eA---l~~l~~~~~~DlIlmDi~MP~mdG--~ea~~~IR~~e 957 (1033)
++++++++-|+. ....++..-+..|+.+..+.+..+. +..+.....+|+||+|- |+.+- .+.++++++.-
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT--aGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETM 346 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC--ccccCcCHHHHHHHHHHH
Confidence 467888877653 2233444444568888777665544 33333223699999996 33322 33344444421
Q ss_pred ccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHH---H-HHcCCCEEEeCCCC
Q 001676 958 HNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEE---C-LRSGMDGYVSKPFE 1013 (1033)
Q Consensus 958 ~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~---~-l~aG~ddyl~KP~~ 1013 (1033)
. ...++-.+++++|.....+..+ . -..|.++.|.-=+|
T Consensus 347 k------------------~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 347 G------------------QVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred h------------------hcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 1 0122334667777555444222 2 24588888654444
No 347
>PRK12704 phosphodiesterase; Provisional
Probab=27.35 E-value=51 Score=40.37 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=37.2
Q ss_pred cEEEEccCCcHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHhhC
Q 001676 983 PILAMTADVIQA--TYEECLRSGMDGYVSKPFEAEQLYREVSRFF 1025 (1033)
Q Consensus 983 PIIalTa~~~~~--~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~~ 1025 (1033)
.+|++|+.+... ....+++.|+.|+..||+..+++...+++-+
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 478899877765 8889999999999999999999998887643
No 348
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.35 E-value=3.6e+02 Score=30.44 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=57.2
Q ss_pred eEEEEeCCHHHHHHHHHHHh----hCCC---EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLK----RYGA---AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 960 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~----~~g~---~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~ 960 (1033)
.|||=|.+-...-.+...++ +.++ ..+.+++-+||.+.+. ...|+|.+|= |..-+=-++.+.++.
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~--agaDiImLDn-mspe~l~~av~~~~~----- 240 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA--AGADIIMLDN-MSLEQIEQAITLIAG----- 240 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH--cCCCEEEECC-CCHHHHHHHHHHhcC-----
Confidence 46666555443322333332 3332 3445789999999884 4689999994 433222233333321
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEE
Q 001676 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
-.++..++....+...+..+.|+|-..
T Consensus 241 ---------------------~~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 241 ---------------------RSRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred ---------------------ceEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 246888999999999999999998543
No 349
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.98 E-value=3.4e+02 Score=31.38 Aligned_cols=85 Identities=28% Similarity=0.380 Sum_probs=60.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhcccccccccccc
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRG 967 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g 967 (1033)
||=|-+|...-.+.++ +++..|.+..++..-.-..+-. .+|..| +++++.||+.
T Consensus 147 KIRI~~d~~kTvd~ak-~~e~aG~~~ltVHGRtr~~kg~-------------~~~pad-~~~i~~v~~~----------- 200 (358)
T KOG2335|consen 147 KIRIFVDLEKTVDYAK-MLEDAGVSLLTVHGRTREQKGL-------------KTGPAD-WEAIKAVREN----------- 200 (358)
T ss_pred EEEecCcHHHHHHHHH-HHHhCCCcEEEEecccHHhcCC-------------CCCCcC-HHHHHHHHHh-----------
Confidence 6777788888877766 7778898887776444322211 233333 7899999972
Q ss_pred ccchhhhcccCCCCCcEEEEccCCcHHHHHHHHH-cCCCEEEe
Q 001676 968 EVSIEAYENVSNFHVPILAMTADVIQATYEECLR-SGMDGYVS 1009 (1033)
Q Consensus 968 ~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~-aG~ddyl~ 1009 (1033)
.+.+||||=-.-...++..+|++ -|+||.++
T Consensus 201 -----------~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 201 -----------VPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred -----------CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 22378887776677789999999 89999986
No 350
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.70 E-value=7.5e+02 Score=28.49 Aligned_cols=80 Identities=11% Similarity=0.209 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001676 414 AKVEEDYHGMMEL----KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489 (1033)
Q Consensus 414 ~~~~~~~~~~~e~----~~~ae~a~~aKs~Fla~vSHELRTPLn~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LI 489 (1033)
.+++++++++++. ++++++..+..++-.+.++|..+. |..+...+.-+... .+.+..+.++.++...++....+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhH
Confidence 3455555555443 456777778888899999999885 45555555555433 44566677777777777766666
Q ss_pred HHHHHH
Q 001676 490 NEVLDQ 495 (1033)
Q Consensus 490 ndlLd~ 495 (1033)
.|+=.+
T Consensus 85 ~DmEa~ 90 (330)
T PF07851_consen 85 FDMEAF 90 (330)
T ss_pred HHHHhh
Confidence 665444
No 351
>PRK15029 arginine decarboxylase; Provisional
Probab=26.57 E-value=3.6e+02 Score=34.75 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=53.0
Q ss_pred cEEEEECCchh--------hHHHHHHHHHHcCcEEEEecCHHHHHHHHhcCCccceEEEeeccccccCcc-chHHHHHHH
Q 001676 739 MKALVVDPRPI--------RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS-VSTLFVNNL 809 (1033)
Q Consensus 739 ~~vlvvd~~~~--------~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~ 809 (1033)
+++++||++.. ........|+..|++|..+.+..+++..+... ..++++++|..+...+.. ....++..+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 36899999884 57778889999999999999999999987542 367899998765433321 112466666
Q ss_pred hh
Q 001676 810 RK 811 (1033)
Q Consensus 810 ~~ 811 (1033)
++
T Consensus 80 R~ 81 (755)
T PRK15029 80 HE 81 (755)
T ss_pred Hh
Confidence 65
No 352
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=26.54 E-value=4.6e+02 Score=28.09 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=70.0
Q ss_pred CcEEEEECCchhhHHHHHHHHHHcCcEE-EEecCHHHHHHHHhcCCccceEEEeeccccccCccchHHHHHHHhhcCCCC
Q 001676 738 GMKALVVDPRPIRAKVSRYHIQRLGIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (1033)
Q Consensus 738 g~~vlvvd~~~~~~~v~~~~l~~~Gi~v-~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1033)
...++++|++|+.+...+..|. .++.+ ..+.+..+++..+. .++++++|..+...+ ........++...+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~--G~~~~~~~i~~~~p-- 80 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKK--LIHYWQDTLSRKNN-- 80 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCcc--HHHHHHHHHHHhCC--
Confidence 4569999999999998888887 44443 35567777766432 378999998765432 21111233333211
Q ss_pred CceEEEEeccCCccccCcCCCCCCCCceeccCCchHHHHHHHHHHhc
Q 001676 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (1033)
Q Consensus 817 ~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~kPl~~s~l~~~l~~~l~ 863 (1033)
..+++++..... ..........+...++.|+.....+..+++.+..
T Consensus 81 ~~~vvvlt~~~~-~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 81 NIKILLLNTPED-YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred CCcEEEEECCch-hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 245555544322 1111111112556789999999999999988774
No 353
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=26.36 E-value=2.3e+02 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCEEE--eCCCCHHHHHHHHHh
Q 001676 981 HVPILAMTADVIQATYEECLRSGMDGYV--SKPFEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~ddyl--~KP~~~~~L~~~v~r 1023 (1033)
.+||++...-.+....+.|.++|+|..+ ..-++.+.+...+++
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 5899987655666688999999999997 333344555544443
No 354
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=26.19 E-value=12 Score=47.78 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=14.3
Q ss_pred CCc-ccchHHHHHHHHHHc
Q 001676 671 HGG-TGIGLSISKYLVGRM 688 (1033)
Q Consensus 671 ~~G-tGLGLsI~k~Lv~~m 688 (1033)
.+| .|.|++.|..|-+.+
T Consensus 246 SGGLHGVG~SVVNALS~~l 264 (903)
T PTZ00109 246 SSGLHGVGLSVVNALSSFL 264 (903)
T ss_pred cCcCCCcceeeeeeccCeE
Confidence 345 799999998888766
No 355
>PLN02335 anthranilate synthase
Probab=26.16 E-value=97 Score=33.44 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=33.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 001676 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 886 ~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
.++|||||-..-.-..+...|++.|+.+.++.+....++.+. ...||.|++
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~-~~~~d~iVi 68 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK-RKNPRGVLI 68 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-hcCCCEEEE
Confidence 468999985444556688888989998888775421123221 235776665
No 356
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=26.08 E-value=4.4e+02 Score=29.55 Aligned_cols=96 Identities=25% Similarity=0.315 Sum_probs=62.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEE-----cChHHHHHHhCCCCCccEEEEcCCC---------CCCCH------
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCV-----ERGKKATELLMPPHQFDACFMDIQM---------PEMDG------ 946 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a-----~~g~eAl~~l~~~~~~DlIlmDi~M---------P~mdG------ 946 (1033)
-|||=+|-++.-.+.....-+++|..+.-. +-.+.-.+++ +.+.||++++==+= -.++.
T Consensus 106 GkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 184 (287)
T PF05582_consen 106 GKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL-EEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKY 184 (287)
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH-HHcCCCEEEEeCchhhhcCCCChhhhhhhhccHH
Confidence 489999999999988888888888766532 2233334444 56889998763211 01111
Q ss_pred -HHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCC
Q 001676 947 -FEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMD 1005 (1033)
Q Consensus 947 -~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~d 1005 (1033)
.|+.+..|+.++.. .- +++-|-+-++..+..++|||+
T Consensus 185 FVeaV~~aR~~ep~~--------------------D~--LVIfAGACQS~fEall~AGAN 222 (287)
T PF05582_consen 185 FVEAVKEARKYEPNL--------------------DD--LVIFAGACQSHFEALLEAGAN 222 (287)
T ss_pred HHHHHHHHHhcCCCc--------------------cc--EEEEcchhHHHHHHHHHcCcc
Confidence 36777777765432 11 233456678889999999997
No 357
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=25.97 E-value=2.4e+02 Score=19.89 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=31.3
Q ss_pred EEEEECCchhhHHHHHHHHHHcCcEEEEecCHHHHHHHH
Q 001676 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778 (1033)
Q Consensus 740 ~vlvvd~~~~~~~v~~~~l~~~Gi~v~~~~~~~~~l~~~ 778 (1033)
+++++++++.........+...|.++....+..++...+
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 40 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELL 40 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHH
Confidence 578888888888877888888999988888877776554
No 358
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=25.83 E-value=99 Score=34.82 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCE------EEeCCCCHHHHHHHHHhhCCCC
Q 001676 981 HVPILAMTADVIQATYEECLRSGMDG------YVSKPFEAEQLYREVSRFFPPI 1028 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~dd------yl~KP~~~~~L~~~v~r~~~~~ 1028 (1033)
.+|||+.-.-.+.++..+++.+|+|. ++.+|.-..++.+.+.+++..+
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 48999999999999999999999996 6788977788888888876543
No 359
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.77 E-value=2.1e+02 Score=32.18 Aligned_cols=68 Identities=22% Similarity=0.108 Sum_probs=46.4
Q ss_pred EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001676 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+||.+.+. ..+|+|.+|= |+.-+=-++.+.++ ...| +..++..
T Consensus 197 IeVEv~tleea~ea~~--~gaDiI~LDn-~s~e~l~~av~~~~-------------------------~~~~-leaSGGI 247 (281)
T PRK06106 197 IEVEVDTLDQLEEALE--LGVDAVLLDN-MTPDTLREAVAIVA-------------------------GRAI-TEASGRI 247 (281)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCC-CCHHHHHHHHHHhC-------------------------CCce-EEEECCC
Confidence 3457889999999884 4689999994 33222122222221 1233 7889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001676 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-..
T Consensus 248 ~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 248 TPETAPAIAASGVDLIS 264 (281)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 360
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=25.23 E-value=3.7e+02 Score=29.91 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=50.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 001676 86 RKVLITW-LLFWTLVSLWIFWYMSSQATEKRR--EALGSMCDERARMLQDQFNVSMNH-VQAMSILIST 150 (1033)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~-~~~l~~l~~~ 150 (1033)
|+++.-. +.+-+++.+.+....+.+...+|. |.+.+...+++..++.|++.++|- ++.+.++.+.
T Consensus 11 r~~~~s~~LPali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~ 79 (297)
T COG3452 11 RRLLKSNYLPALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKH 79 (297)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Confidence 3444333 666666666667777777776555 889999999999999999999986 9999999644
No 361
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=25.18 E-value=1.9e+02 Score=30.82 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=28.9
Q ss_pred CCcEEEEccC----------CcHHHHHHHHHcCCCEEEe-------CC--CCHHHHHHHHHh
Q 001676 981 HVPILAMTAD----------VIQATYEECLRSGMDGYVS-------KP--FEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPIIalTa~----------~~~~~~~~~l~aG~ddyl~-------KP--~~~~~L~~~v~r 1023 (1033)
.+|||.++.. ...+...+|.++|+| ++. +| -+..++.+.+++
T Consensus 56 ~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 56 DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 4788766531 235678899999999 554 45 566777777776
No 362
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=24.95 E-value=5.4e+02 Score=26.77 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=48.8
Q ss_pred HHHHhhCCCEEEEEc---ChHHHHHHhCCCCCccEEEEcCCCCCCCH-------HHHHHHHHhccccccccccccccchh
Q 001676 903 AAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMDG-------FEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 903 ~~~L~~~g~~v~~a~---~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-------~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
...+++.|..+.... +..+.++.+. . ..|.++.+.-.|+-+| .+..+++|++-.
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~-------------- 161 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYL-D-EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIP-------------- 161 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHH-h-hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHH--------------
Confidence 444556666544332 2344444442 2 2688877665565544 344455554311
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
...+++||++. +-...+...++.++|+|+++.
T Consensus 162 ----~~~~~~pi~v~-GGI~~env~~~~~~gad~iiv 193 (211)
T cd00429 162 ----ENNLNLLIEVD-GGINLETIPLLAEAGADVLVA 193 (211)
T ss_pred ----hcCCCeEEEEE-CCCCHHHHHHHHHcCCCEEEE
Confidence 01234677544 455568889999999999875
No 363
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=24.91 E-value=2.8e+02 Score=28.61 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=22.5
Q ss_pred cCCCCeEEEEeCCHHH---HHHHHHHHhhCCCEEE
Q 001676 883 LLLGRKILIVDDNNVN---LKVAAAGLKRYGAAVV 914 (1033)
Q Consensus 883 ~~~~~~ILIVDDn~~n---~~vl~~~L~~~g~~v~ 914 (1033)
...+++||||||--.. ...+...|++.|..|.
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~ 139 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVA 139 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEE
Confidence 3468899999997666 4445566667776654
No 364
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.88 E-value=8.5e+02 Score=26.85 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=56.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEE--c-ChHHHHHHh-CCCCCccEEEEcCCCCCCC---------HHHHHHHHHh
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCV--E-RGKKATELL-MPPHQFDACFMDIQMPEMD---------GFEATKIIRE 955 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a--~-~g~eAl~~l-~~~~~~DlIlmDi~MP~md---------G~ea~~~IR~ 955 (1033)
|++.|--......+...++++|.....+ . ...+-+..+ .....|.+++. . + +-. -.+.++++|+
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHHHHHh
Confidence 5555555555566777788889764432 2 223333333 22223555543 2 1 222 3456666665
Q ss_pred ccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEeCC
Q 001676 956 MEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVSKP 1011 (1033)
Q Consensus 956 ~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~KP 1011 (1033)
. ...||++=-+-...++..++.++|+|+++.-.
T Consensus 196 ~-----------------------~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 196 Y-----------------------SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred h-----------------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 2 23576654444458999999999999998764
No 365
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=24.85 E-value=1.1e+02 Score=34.37 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEE--EEccCCcHHHHHHHHHcCCCEEE-----eCCCCHHHH
Q 001676 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPIL--AMTADVIQATYEECLRSGMDGYV-----SKPFEAEQL 1017 (1033)
Q Consensus 945 dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPII--alTa~~~~~~~~~~l~aG~ddyl-----~KP~~~~~L 1017 (1033)
-|+++++++++. ..+||| +.-+-.+.++...++++|+|+++ .|.-++++.
T Consensus 184 ~~~elLkei~~~-----------------------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~ 240 (287)
T TIGR00343 184 VPVELLLEVLKL-----------------------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL 240 (287)
T ss_pred CCHHHHHHHHHh-----------------------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHH
Confidence 567888887752 258998 77777799999999999999985 454455554
Q ss_pred HHHH
Q 001676 1018 YREV 1021 (1033)
Q Consensus 1018 ~~~v 1021 (1033)
.+.+
T Consensus 241 akaf 244 (287)
T TIGR00343 241 AKAI 244 (287)
T ss_pred HHHH
Confidence 4433
No 366
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=24.51 E-value=4.8e+02 Score=27.22 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEE---EcChHHHHHHhCCCCCccEEEEcCCCCCCCHH-------HHHHHHHhccc
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVC---VERGKKATELLMPPHQFDACFMDIQMPEMDGF-------EATKIIREMEH 958 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~---a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~-------ea~~~IR~~e~ 958 (1033)
|.+-++...........+++.|..+.. ..+..+.++.+ ....|.++.+---|+..|- +..+++|++-.
T Consensus 83 v~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~--~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~ 160 (210)
T TIGR01163 83 ITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYV--LPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMID 160 (210)
T ss_pred EEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHH--HhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHH
Q ss_pred cccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 959 NFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 959 ~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
+ ..+++| |++.+-...+...++.+.|+|.++.
T Consensus 161 ~------------------~~~~~~-i~v~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 161 E------------------NGLSIL-IEVDGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred h------------------cCCCce-EEEECCcCHHHHHHHHHcCCCEEEE
No 367
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=24.31 E-value=2.4e+02 Score=31.88 Aligned_cols=69 Identities=20% Similarity=0.152 Sum_probs=47.4
Q ss_pred EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001676 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+||.+.+. ..+|+|.+|-.-| |-++++-++. ..+ ..|..++..
T Consensus 211 IeVEv~sleea~ea~~--~gaDiI~LDn~s~-----e~~~~av~~~---------------------~~~-~~ieaSGGI 261 (296)
T PRK09016 211 VEVEVENLDELDQALK--AGADIIMLDNFTT-----EQMREAVKRT---------------------NGR-ALLEVSGNV 261 (296)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEeCCCCh-----HHHHHHHHhh---------------------cCC-eEEEEECCC
Confidence 5567889999999884 4689999995433 2233222210 012 367789999
Q ss_pred cHHHHHHHHHcCCCEEEe
Q 001676 992 IQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl~ 1009 (1033)
..+...+.-+.|+|-..+
T Consensus 262 ~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 262 TLETLREFAETGVDFISV 279 (296)
T ss_pred CHHHHHHHHhcCCCEEEe
Confidence 999999999999986543
No 368
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=24.30 E-value=89 Score=32.67 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=35.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
|||||.....-.-+...|++.|++|..+.+..--++.+. ...||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE-QLAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCeEEE
Confidence 899999998889999999999999999887642223232 235676655
No 369
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.13 E-value=1.5e+02 Score=32.90 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCc------HHHHHHHHHcCCCEEEeCCCCH
Q 001676 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVI------QATYEECLRSGMDGYVSKPFEA 1014 (1033)
Q Consensus 946 G~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~------~~~~~~~l~aG~ddyl~KP~~~ 1014 (1033)
-+|+.+++|+. +..+||+.||=.+. +.-..+|.++|+|+.|.--+-.
T Consensus 81 ~lel~~~~r~~----------------------~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ 133 (265)
T COG0159 81 TLELVEEIRAK----------------------GVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPP 133 (265)
T ss_pred HHHHHHHHHhc----------------------CCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCCh
Confidence 37778888862 34689999985443 4557789999999999864433
No 370
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=24.00 E-value=5.1e+02 Score=33.12 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=72.5
Q ss_pred HHHHHHHhhCCCEEEE--EcChHHHHHHhCCCCCccEEEEcCCCC-C----CCHHHHHHHHHhccccccccccccccchh
Q 001676 900 KVAAAGLKRYGAAVVC--VERGKKATELLMPPHQFDACFMDIQMP-E----MDGFEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 900 ~vl~~~L~~~g~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi~MP-~----mdG~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
......|++.|+.+.. +.+|...+..+. .-++|.|=+|-..= . -....+++.|..+..
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~-~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 745 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLV-SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQ-------------- 745 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHh-hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHH--------------
Confidence 3345578899998876 457777777774 46799999987541 1 112334444443211
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCC----EEEeCCCCHHHHHHHHHhhCC
Q 001676 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAEQLYREVSRFFP 1026 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~d----dyl~KP~~~~~L~~~v~r~~~ 1026 (1033)
.-++.+| .++-.+.+....+.+.|+| .|+.||...++|...+++|.+
T Consensus 746 ------~~~i~vi-a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~~ 796 (799)
T PRK11359 746 ------SLNLTVV-AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLP 796 (799)
T ss_pred ------HCCCeEE-EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhccc
Confidence 1134444 5677888888899999998 468899999999999998854
No 371
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=23.99 E-value=2.1e+02 Score=30.03 Aligned_cols=68 Identities=9% Similarity=0.076 Sum_probs=44.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCE--EE-EEcChHHHHHHhCC-CCCccEEEEcCCCCCCCHHHHHHHHH
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP-PHQFDACFMDIQMPEMDGFEATKIIR 954 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eAl~~l~~-~~~~DlIlmDi~MP~mdG~ea~~~IR 954 (1033)
.++..||.++...+.++.-++..|.. +. ...|..+++..+.. ...+|+|++|--...-.--++.+.+.
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 37999999999999999988887753 33 33455455554422 23489999997554322233444443
No 372
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.90 E-value=2.3e+02 Score=32.03 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=47.8
Q ss_pred EEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCC
Q 001676 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADV 991 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~ 991 (1033)
..+.+++-+|+.+.+. ..+|+|.+|= |+..+=-++.+.++. -.++-.++..
T Consensus 208 IeVEvetleea~eA~~--aGaDiImLDn-mspe~l~~av~~~~~--------------------------~~~lEaSGGI 258 (294)
T PRK06978 208 VQIEVETLAQLETALA--HGAQSVLLDN-FTLDMMREAVRVTAG--------------------------RAVLEVSGGV 258 (294)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEECC-CCHHHHHHHHHhhcC--------------------------CeEEEEECCC
Confidence 3456789999999884 5689999994 443332333333321 2468889999
Q ss_pred cHHHHHHHHHcCCCEEE
Q 001676 992 IQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 992 ~~~~~~~~l~aG~ddyl 1008 (1033)
..+...+..+.|+|-..
T Consensus 259 t~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 259 NFDTVRAFAETGVDRIS 275 (294)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998543
No 373
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=23.88 E-value=5.6e+02 Score=28.12 Aligned_cols=84 Identities=17% Similarity=0.062 Sum_probs=58.0
Q ss_pred ChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHH
Q 001676 918 RGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYE 997 (1033)
Q Consensus 918 ~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~ 997 (1033)
.....++++. ...||.|+.|++=-.+|--++...|+..+. ..-.|++= ....+..+..
T Consensus 21 ~~p~~~e~~~-~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~--------------------~g~~~~VR-v~~~~~~~i~ 78 (249)
T TIGR02311 21 ADPYAAEICA-GAGFDWLLIDGEHAPNDVRTILSQLQALAP--------------------YPSSPVVR-PAIGDPVLIK 78 (249)
T ss_pred CCcHHHHHHH-hcCCCEEEEeccCCCCCHHHHHHHHHHHHh--------------------cCCCcEEE-CCCCCHHHHH
Confidence 3345555553 346999999999888888888887776321 11233443 4455667899
Q ss_pred HHHHcCCCEEEe-CCCCHHHHHHHHHh
Q 001676 998 ECLRSGMDGYVS-KPFEAEQLYREVSR 1023 (1033)
Q Consensus 998 ~~l~aG~ddyl~-KP~~~~~L~~~v~r 1023 (1033)
+++++|+++.+. |--+.++..+.++.
T Consensus 79 ~~Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 79 QLLDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred HHhCCCCCEEEecCcCCHHHHHHHHHH
Confidence 999999998865 55677887777664
No 374
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.88 E-value=4.7e+02 Score=31.22 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=59.0
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHH--HHHHHHHhccccc
Q 001676 886 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGF--EATKIIREMEHNF 960 (1033)
Q Consensus 886 ~~~ILIVDDn~~n---~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~--ea~~~IR~~e~~~ 960 (1033)
+++|.+|+-++.- ...+...-+..|..+..+.+..+....+..-..+|+||+|. |++... ..+..++++-..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt--~G~~~~d~~~~~~L~~ll~~- 327 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT--AGRSQRDKRLIEELKALIEF- 327 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC--CCCCCCCHHHHHHHHHHHhc-
Confidence 4689999887632 12233334446777777777665554443334699999996 333322 223334332110
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHH----HcCCCEEEeCCCC
Q 001676 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSKPFE 1013 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l----~aG~ddyl~KP~~ 1013 (1033)
...+.-..+++++.....+..+.. ..|.+.+|.--+|
T Consensus 328 ----------------~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlD 368 (424)
T PRK05703 328 ----------------SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLD 368 (424)
T ss_pred ----------------cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 001122367788877766655543 3467666544343
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.74 E-value=6.5e+02 Score=28.02 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHhhCCCEEEEEcCh-------HHHHHHhCCCCCccEEEEcCCCCCCCH--HHHHHHH
Q 001676 886 GRKILIVDDNNV---NLKVAAAGLKRYGAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDG--FEATKII 953 (1033)
Q Consensus 886 ~~~ILIVDDn~~---n~~vl~~~L~~~g~~v~~a~~g-------~eAl~~l~~~~~~DlIlmDi~MP~mdG--~ea~~~I 953 (1033)
+++|+++|-|.. ..+.+....+..|..+.....+ .+++.... ...||+||+|. |+... -+...++
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~-~~~~D~ViIDT--~G~~~~d~~~~~el 176 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK-ARNIDVVLIDT--AGRLQNKVNLMDEL 176 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH-HCCCCEEEEeC--CCCCcchHHHHHHH
Confidence 568999996642 2344555666777666554333 13333332 35699999996 33322 2233344
Q ss_pred HhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHH----HcCCCEEEeC
Q 001676 954 REMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECL----RSGMDGYVSK 1010 (1033)
Q Consensus 954 R~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l----~aG~ddyl~K 1010 (1033)
+++..-..... ...++-.++++.+....+....+. ..|.++.|.=
T Consensus 177 ~~~~~~~~~~~------------~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 177 KKIKRVIKKVD------------KDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred HHHHHHHhccc------------CCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEE
Confidence 43211000000 012344578888876665444433 2567776543
No 376
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.37 E-value=6.9e+02 Score=29.47 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred CCeEEEEeCCHHH---HHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEcCC--CCCCCHHHHHHHHHhccccc
Q 001676 886 GRKILIVDDNNVN---LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGFEATKIIREMEHNF 960 (1033)
Q Consensus 886 ~~~ILIVDDn~~n---~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~--MP~mdG~ea~~~IR~~e~~~ 960 (1033)
+++|.+|+-|..- ...++.+.+..|..+..+.+..+....+.....+|+||+|-- +| .|-.. +.+++++-..
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~- 282 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSP-KDFMK-LAEMKELLNA- 282 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHh-
Confidence 5678888777531 223444444567778777776655444433357999999974 22 23332 3344432110
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHH----cCCCEEEeCCCC
Q 001676 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLR----SGMDGYVSKPFE 1013 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~----aG~ddyl~KP~~ 1013 (1033)
...+.-.+++++|.....+..+.++ .|.++.|.-=+|
T Consensus 283 ----------------~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 283 ----------------CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred ----------------cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 0111235788998888777765544 457777643333
No 377
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=23.12 E-value=8.7e+02 Score=29.75 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=61.4
Q ss_pred CeEEEEeCCH---HHHHHHHHHHhh-C-CCEEEE--EcChHHHHHHhCCCCCccEEEEcC--------------CCCCCC
Q 001676 887 RKILIVDDNN---VNLKVAAAGLKR-Y-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEMD 945 (1033)
Q Consensus 887 ~~ILIVDDn~---~n~~vl~~~L~~-~-g~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi--------------~MP~md 945 (1033)
--++++|--. .+..-.-..+++ + +..+.. +.+.++|..+.. ...|.|..-+ -.|...
T Consensus 261 ~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~ 338 (505)
T PLN02274 261 VDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCccccCccccccCCCccc
Confidence 4577776432 221123334443 4 355543 678888888763 5689886632 123333
Q ss_pred HHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 946 GFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 946 G~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
-+..+.++.+ ...+|||+=-+-....+..+|+.+||+..+.
T Consensus 339 ~i~~~~~~~~-----------------------~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 339 AVYKVASIAA-----------------------QHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred HHHHHHHHHH-----------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4444555443 1258999999999999999999999998764
No 378
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.99 E-value=2.9e+02 Score=30.41 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=41.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCC--EEE-EEcChHHHHHHhCC----CCCccEEEEcCC
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP----PHQFDACFMDIQ 940 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eAl~~l~~----~~~~DlIlmDi~ 940 (1033)
-+|.-+|-++.....++..+++.|+ .|. ...+..+.+..+.. ...||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4799999999999999999999985 343 34556666665422 257999999987
No 379
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.94 E-value=81 Score=25.24 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=7.8
Q ss_pred HHHhhhhHHH
Q 001676 117 EALGSMCDER 126 (1033)
Q Consensus 117 ~~~~~~~~~~ 126 (1033)
+.|.+|||+.
T Consensus 22 ~ald~~CDQg 31 (47)
T PRK10299 22 QVFNMMCDQD 31 (47)
T ss_pred HHHHHHhcCC
Confidence 5678999875
No 380
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.73 E-value=1.4e+02 Score=32.88 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=48.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCC------CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCH-----HHHHHHHHh
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYG------AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----FEATKIIRE 955 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g------~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG-----~ea~~~IR~ 955 (1033)
++|-+||=++...++.+..+.... -.-....||.+-++.... ..||+|++|+.-|...+ .|..+.+++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDVIIVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEEEEEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccEEEEeCCCCCCCcccccCHHHHHHHHh
Confidence 579999999999999999886531 123367899988887532 27999999999886554 355555544
No 381
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=22.17 E-value=31 Score=22.85 Aligned_cols=9 Identities=22% Similarity=0.323 Sum_probs=7.5
Q ss_pred hhccccccc
Q 001676 29 SMNCFMNYE 37 (1033)
Q Consensus 29 ~~~~~~~~~ 37 (1033)
.+|||.+.|
T Consensus 5 CiNWFE~~g 13 (22)
T PF08452_consen 5 CINWFESRG 13 (22)
T ss_pred EeehhhhCC
Confidence 479999977
No 382
>PRK13566 anthranilate synthase; Provisional
Probab=22.00 E-value=2.3e+02 Score=36.29 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=40.4
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 001676 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 883 ~~~~~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
...+++|||||-...+-..+...|++.|++|..+...... +.+. ...||.|++
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~-~~~~DgVVL 575 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLD-RVNPDLVVL 575 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhh-hcCCCEEEE
Confidence 3457899999999888899999999999999988766432 2221 246898775
No 383
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=21.94 E-value=8.8e+02 Score=24.94 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 001676 392 SIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 450 (1033)
Q Consensus 392 ~i~~lvi~~l~~~i~~~~~~-----r~~~~~~~~~~~~e~~~~ae~a~~aKs~Fla~vSHELRT 450 (1033)
++.++++.+++.++++..+. |...+........+.+.++++....-.+-++..-.|...
T Consensus 25 iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 88 (173)
T PRK13453 25 VLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQK 88 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333 333344444444444444444333333334444444433
No 384
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=21.91 E-value=3.1e+02 Score=31.23 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=46.0
Q ss_pred EEEEEcChHHHHHHhC----CCCCccEEEEcCC--CCCC---CHHHHHHHHHhccccccccccccccchhhhcccCCCCC
Q 001676 912 AVVCVERGKKATELLM----PPHQFDACFMDIQ--MPEM---DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHV 982 (1033)
Q Consensus 912 ~v~~a~~g~eAl~~l~----~~~~~DlIlmDi~--MP~m---dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~i 982 (1033)
..+.+++-+||.+.+. .....|+|++|=. -|+- +=-++-+.++.. ....
T Consensus 206 IeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~----------------------~~~~ 263 (308)
T PLN02716 206 IEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI----------------------NGRF 263 (308)
T ss_pred EEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh----------------------CCCc
Confidence 3446788999988874 0145899999943 1221 222222222211 1123
Q ss_pred cEEEEccCCcHHHHHHHHHcCCCEEE
Q 001676 983 PILAMTADVIQATYEECLRSGMDGYV 1008 (1033)
Q Consensus 983 PIIalTa~~~~~~~~~~l~aG~ddyl 1008 (1033)
.+-.++....+...+..+.|+|-..
T Consensus 264 -~lEaSGGIt~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 264 -ETEASGNVTLDTVHKIGQTGVTYIS 288 (308)
T ss_pred -eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 4888999999999999999998543
No 385
>PRK05637 anthranilate synthase component II; Provisional
Probab=21.75 E-value=1.6e+02 Score=31.42 Aligned_cols=49 Identities=8% Similarity=0.139 Sum_probs=37.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEE
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlm 937 (1033)
++||++|-..-+-.-+...|++.|+.+.++.+.... +.+. ...||.|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~-~~l~-~~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPV-EEIL-AANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCH-HHHH-hcCCCEEEE
Confidence 479999998888899999999999999988775432 2221 235788877
No 386
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=21.57 E-value=1.5e+02 Score=33.19 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=30.5
Q ss_pred CCcEE--EEccCCcHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHh
Q 001676 981 HVPIL--AMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPII--alTa~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r 1023 (1033)
.+||| +..+-...++..+++++|+|+++. +.-++.+..+.+.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ 243 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVE 243 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHH
Confidence 48997 777766999999999999999864 33345444444433
No 387
>PRK04302 triosephosphate isomerase; Provisional
Probab=21.57 E-value=1e+03 Score=25.47 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=25.6
Q ss_pred CCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 981 HVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
++||++-.+-...++..++.+.|+|+++.
T Consensus 173 ~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 173 DVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 58999888888899999999999999875
No 388
>PRK00536 speE spermidine synthase; Provisional
Probab=21.40 E-value=2.7e+02 Score=31.00 Aligned_cols=60 Identities=10% Similarity=0.174 Sum_probs=32.6
Q ss_pred eEEEEeCCHHHHHHHHHHHhhCC-----CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 001676 888 KILIVDDNNVNLKVAAAGLKRYG-----AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKII 953 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~~L~~~g-----~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~I 953 (1033)
+|-+||=|+...++.+..|-... -.+.... ...+ . ....||+||+|.. +.-+-++.+++.
T Consensus 96 ~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~~-~-~~~~fDVIIvDs~-~~~~fy~~~~~~ 160 (262)
T PRK00536 96 HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLLD-L-DIKKYDLIICLQE-PDIHKIDGLKRM 160 (262)
T ss_pred eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhhh-c-cCCcCCEEEEcCC-CChHHHHHHHHh
Confidence 67777777776666666554321 1233222 1111 1 1357999999963 555555555443
No 389
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.36 E-value=6.3e+02 Score=27.57 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=35.2
Q ss_pred CCcEEEEccCCcHHHHHHHHHc-CCCEEEe------CCCCHHHHHHHHHh
Q 001676 981 HVPILAMTADVIQATYEECLRS-GMDGYVS------KPFEAEQLYREVSR 1023 (1033)
Q Consensus 981 ~iPIIalTa~~~~~~~~~~l~a-G~ddyl~------KP~~~~~L~~~v~r 1023 (1033)
.+|||+--.-.+.++..++++. |+++.+. .-++.+++...+++
T Consensus 197 ~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 197 NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 5899999999999999999975 9998886 55777777776654
No 390
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=21.34 E-value=65 Score=39.71 Aligned_cols=51 Identities=35% Similarity=0.660 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCChhhHhh--------ccCcccccC---CCCCCCCCc-ccchHHHHHHHHHHc
Q 001676 638 IVSVEDTGQGIPLEAQSR--------IFTPFMQVG---PSISRTHGG-TGIGLSISKYLVGRM 688 (1033)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~--------IFepF~q~d---~s~s~~~~G-tGLGLsI~k~Lv~~m 688 (1033)
.|+|.|+|-|||-+..++ ||......+ .......|| .|.|.|.|..|-+..
T Consensus 69 sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 69 SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred eEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceE
Confidence 389999999999887443 454332211 111122233 688999888876643
No 391
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.30 E-value=6.6e+02 Score=30.65 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=58.4
Q ss_pred CCeEEEEeC----CHHHHHHHHHHHhhC-CCEEEE--EcChHHHHHHhCCCCCccEEEEcC--------------CCCCC
Q 001676 886 GRKILIVDD----NNVNLKVAAAGLKRY-GAAVVC--VERGKKATELLMPPHQFDACFMDI--------------QMPEM 944 (1033)
Q Consensus 886 ~~~ILIVDD----n~~n~~vl~~~L~~~-g~~v~~--a~~g~eAl~~l~~~~~~DlIlmDi--------------~MP~m 944 (1033)
|-.++++|- .....+.++.+=+.+ +..+.. +.+.++|..+.. ...|.|...+ -.|
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~Gs~~~t~~~~~~g~p-- 328 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSGSICITQEVCAVGRP-- 328 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCCcccccchhccCCCC--
Confidence 345777774 333344444444443 233333 455666666653 4578775533 223
Q ss_pred CHHHHHHHHHhccccccccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 945 DGFEATKIIREMEHNFNNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 945 dG~ea~~~IR~~e~~~~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
.+.++..+++.-. ...+|||+=-+-....+..+|+.+||+..+.
T Consensus 329 -~~~ai~~~~~~~~--------------------~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 329 -QASAVYHVARYAR--------------------ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred -hHHHHHHHHHHHh--------------------hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 2344444443211 1248999988888899999999999997764
No 392
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=20.99 E-value=6e+02 Score=28.29 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=58.0
Q ss_pred eEEEEeCCHHHHHHHHH---HHh-hCC---CEEEEEcChHHHHHHhCCCCCccEEEEcCCCCCCCHHHHHHHHHhccccc
Q 001676 888 KILIVDDNNVNLKVAAA---GLK-RYG---AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGFEATKIIREMEHNF 960 (1033)
Q Consensus 888 ~ILIVDDn~~n~~vl~~---~L~-~~g---~~v~~a~~g~eAl~~l~~~~~~DlIlmDi~MP~mdG~ea~~~IR~~e~~~ 960 (1033)
.+||.|++....-.+.. ..+ ..| ..-..+++-+||.+... ...|.|.+|-.-| +-++++.+.-
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~--~gaDyI~ld~~~~-----e~lk~~v~~~--- 219 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAE--AGADIIMLDNMKP-----EEIKEAVQLL--- 219 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHH--cCCCEEEECCCCH-----HHHHHHHHHh---
Confidence 57777776443321111 122 233 23456788899888873 4689999987443 4455544321
Q ss_pred cccccccccchhhhcccCCCCCcEEEEccCCcHHHHHHHHHcCCCEEEe
Q 001676 961 NNRIRRGEVSIEAYENVSNFHVPILAMTADVIQATYEECLRSGMDGYVS 1009 (1033)
Q Consensus 961 ~~~~~~g~~~~~~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~ddyl~ 1009 (1033)
..++||++ ++....+...+..++|+|..-+
T Consensus 220 ------------------~~~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 220 ------------------KGRVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred ------------------cCCCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 11367665 6667889999999999998753
No 393
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=20.91 E-value=3.5e+02 Score=29.37 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=41.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCE--EE-EEcChHHHHHHhCC---CCCccEEEEcCC
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQ 940 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eAl~~l~~---~~~~DlIlmDi~ 940 (1033)
.+|.-+|=++.....++..+++.|+. +. ...+..+.+..+.. ...||+||+|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 48999999999999999999998863 33 34566666665421 357999999975
No 394
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=20.84 E-value=2.3e+02 Score=27.55 Aligned_cols=34 Identities=6% Similarity=0.088 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001676 120 GSMCDERARMLQDQFNVSMNHVQAMSILISTFHH 153 (1033)
Q Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~ 153 (1033)
..-..+..+-+.++|+....-++.++..+++.++
T Consensus 76 ~~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f 109 (118)
T PRK10697 76 QPSSSELLDEVDRELAAGEQRLREMERYVTSDTF 109 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5567788889999999999999999999988543
No 395
>PLN02823 spermine synthase
Probab=20.75 E-value=2.4e+02 Score=32.58 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=40.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhC-----CCEEE-EEcChHHHHHHhCCCCCccEEEEcCCCCC
Q 001676 887 RKILIVDDNNVNLKVAAAGLKRY-----GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE 943 (1033)
Q Consensus 887 ~~ILIVDDn~~n~~vl~~~L~~~-----g~~v~-~a~~g~eAl~~l~~~~~~DlIlmDi~MP~ 943 (1033)
.+|-+||=|+...++++..+... +-.+. ...||.+-++.. ...||+||+|+.-|.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~ 188 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPV 188 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCcc
Confidence 47999999999999999988532 12333 457788777643 457999999986553
No 396
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=20.55 E-value=1.6e+02 Score=33.05 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=30.7
Q ss_pred CCcEE--EEccCCcHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHH
Q 001676 981 HVPIL--AMTADVIQATYEECLRSGMDGYVS-----KPFEAEQLYREVS 1022 (1033)
Q Consensus 981 ~iPII--alTa~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~ 1022 (1033)
.+||| +.-.-...++..+++++|+|+++. |.-++.+..+.+.
T Consensus 203 ~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv 251 (293)
T PRK04180 203 RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIV 251 (293)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHH
Confidence 58998 777767999999999999999853 4445555444443
No 397
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.33 E-value=1.2e+03 Score=25.73 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001676 387 LAISTSIGILVIASLVGHIFQATVN 411 (1033)
Q Consensus 387 ~~~~~~i~~lvi~~l~~~i~~~~~~ 411 (1033)
+.+..++-+++++.++.++++..+.
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~ 31 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPII 31 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555443
No 398
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.26 E-value=2.8e+02 Score=29.32 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=60.1
Q ss_pred HHHHHHHhhCCCEEEEEc--ChHHHHHHhCCCCCccEEEEcCCCC-C----CCHHHHHHHHHhccccccccccccccchh
Q 001676 900 KVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMP-E----MDGFEATKIIREMEHNFNNRIRRGEVSIE 972 (1033)
Q Consensus 900 ~vl~~~L~~~g~~v~~a~--~g~eAl~~l~~~~~~DlIlmDi~MP-~----mdG~ea~~~IR~~e~~~~~~~~~g~~~~~ 972 (1033)
.-....|++.|+.+..-+ .+...++.+. .-.||.|=+|..+. . ......++.|....+
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~-~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~-------------- 199 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLK-RLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH-------------- 199 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHHH-hCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH--------------
Confidence 335556778899887643 5556566663 45699999996542 1 123444555544321
Q ss_pred hhcccCCCCCcEEEEccCCcHHHHHHHHHcCCC----EEEeCCCCHH
Q 001676 973 AYENVSNFHVPILAMTADVIQATYEECLRSGMD----GYVSKPFEAE 1015 (1033)
Q Consensus 973 ~~~~~~~~~iPIIalTa~~~~~~~~~~l~aG~d----dyl~KP~~~~ 1015 (1033)
...+++| .++-.+.++...+.+.|++ .|+.||.+.+
T Consensus 200 ------~~~~~vi-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 200 ------SLGLKVV-AEGVETEEQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred ------HCCCeEE-EEecCCHHHHHHHHHcCCCeeeeceeccCCCCC
Confidence 1234444 6888889999999999996 4677887653
No 399
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=20.24 E-value=1.1e+02 Score=31.91 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=36.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEEcChHHHHHHhCCCCCccEEEEc
Q 001676 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938 (1033)
Q Consensus 889 ILIVDDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIlmD 938 (1033)
||+||.....-.-+...|++.|+++..+.+....++.+. ...||.|++-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID-ALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCEEEEc
Confidence 899999998888899999999999988877642233332 2357877763
Done!