Query 001676
Match_columns 1033
No_of_seqs 531 out of 4583
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:24:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001676.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_971-975//hhsearch_pdb/001676hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4l_A Histidine kinase 4; PAS 1.0 1 1 390.1 27.6 268 107-382 1-270 (270)
2 2c2a_A Sensor histidine kinase 1.0 1 1 317.0 32.1 232 428-712 11-249 (258)
3 1gkz_A [3-methyl-2-oxobutanoat 1.0 1 1 295.6 24.6 228 432-714 116-376 (388)
4 2btz_A Pyruvate dehydrogenase 1.0 1 1 295.3 24.7 220 438-712 96-351 (394)
5 2e0a_A Pyruvate dehydrogenase 1.0 1 1 292.1 26.0 220 437-712 95-351 (394)
6 2q8g_A [pyruvate dehydrogenase 1.0 1 1 288.2 26.6 220 437-712 106-364 (407)
7 1y8o_A [pyruvate dehydrogenase 1.0 1 1 284.3 24.0 221 436-712 117-375 (419)
8 4ew8_A Sensor protein DIVL; si 1.0 1 1 279.0 32.5 234 421-714 24-259 (268)
9 3jz3_A Sensor protein QSEC; he 1.0 1 1 275.9 13.3 216 437-713 2-219 (222)
10 3a0r_A Sensor protein; four he 1.0 1 1 269.7 25.4 214 435-712 130-346 (349)
No 1
>3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A*
Probab=1.00 E-value=1 Score=390.07 Aligned_cols=268 Identities=65% Similarity=1.011 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 83889999999975445899999999999878799999999740357899998887899999988433078950023400
Q 001676 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186 (1033)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~F~~~t~~~~~~~p~i~~~~~~~ 186 (1033)
|+.+..++|++.|.++||+++.+||++|+.++++++++++||+++|+.++++.|++++|..|+++++.++|+|+|++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~a~~~a~~L~~~l~~~~~~l~~la~l~~~~~f~~~~~~v~~~~F~~~a~~l~~~~pgi~~l~~ap 80 (270)
T 3t4l_A 1 MDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAE 80 (270)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCHHHHHHHHHHTGGGCTTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 97078899999999999999999999999999999999988641012106898999999999999853088752899984
Q ss_pred CCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 14820489999982740011024556899888899999610016964078760886306789101899999997199221
Q 001676 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266 (1033)
Q Consensus 187 ~v~~~~r~~fE~~~~~~i~~~~~~~~~~~~~~~p~~~~~~Y~Pvi~~~~~~~~~~g~D~~s~~~~~~~i~~Ar~tg~~~l 266 (1033)
+|++++|++||++++|.|+++.. .+|++.|++|+||+|+++.|+.++||||+|+|.|++++.+||+||++++
T Consensus 81 ~V~~~~r~~fe~~~~~~I~~~~~--------~~p~~~r~~y~pi~y~ep~N~~alG~D~~S~p~rr~al~~Ar~tg~~~l 152 (270)
T 3t4l_A 81 KVVNFEREMFERQHNWVIKTMDR--------GEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVL 152 (270)
T ss_dssp CEEGGGHHHHHHHHTSCCBCTTT--------CCBCCCCSEECBEEEECGGGGGGBTBBGGGSHHHHHHHHHHHHHSSCEE
T ss_pred ECCHHHHHHHHHCCCCEEECCCC--------CCCCCCCCCCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 24976799998533762331477--------6658888862059994798764131546787889999999998599378
Q ss_pred ECCEEECCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEE
Q ss_conf 10102035697218999863146899999936898724224642011889999999864104609898512579987500
Q 001676 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPIS 346 (1033)
Q Consensus 267 t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~~~~~~~v~~l~~~ll~~~~~~~~i~i~v~d~~~~~~~~~ 346 (1033)
|+|++|+|.++.|+++++|||..+.+++.|+++|+++++||++++|+++++++.++.+....+.+.+.+||.++.+.+..
T Consensus 153 s~pv~Lvq~~~~G~ll~~PVy~~~~~~~~t~~~R~~~~~G~v~~v~~~~~l~~~~l~~~~~~~~l~l~i~D~~~~~~~~~ 232 (270)
T 3t4l_A 153 TSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLV 232 (270)
T ss_dssp CCCEECTTTCCEEEEEEEEEECTTCCSSCCHHHHHHTEEEEEEEEECHHHHHHHHHHTSTTGGGEEEEEEECSSTTSCEE
T ss_pred ECCEEECCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHEEEEEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 46845246898349999976168999878889999987627999989999999986414667837999997999887742
Q ss_pred CCCCCCCCC--CCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 013645899--722786304799544321022102359
Q 001676 347 MYGSNVSDD--GLWLVSTLNFGDPFRKHEMRCRFKQKA 382 (1033)
Q Consensus 347 ~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1033)
+|++..... ++.+.+.++||+|+|+|+|+|+|++++
T Consensus 233 ly~s~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 270 (270)
T 3t4l_A 233 MYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKA 270 (270)
T ss_dssp EECC--CCCCTTCCEEEEECCSCTTCCEEEEEEECC--
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCHHHHHEEEECCCCC
T ss_conf 00689988887604899850478255420135436698
No 2
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=1.00 E-value=1 Score=316.97 Aligned_cols=232 Identities=26% Similarity=0.410 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 999999999999999917765788999999999983599---99779999999999999999999999999876339910
Q 001676 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE---LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504 (1033)
Q Consensus 428 ~~ae~a~~aKs~Fla~iSHELRTPLn~I~G~lelL~~~~---l~~~q~~~l~~i~~s~~~L~~LIndiLd~skie~g~l~ 504 (1033)
+++++.++.|.+|++++||||||||++|.|+++++.+.. .....+++++.+..++++|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999870034158789999999999842247899999999999999999999999999999885278866
Q ss_pred EEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC----EEEEEEEEE
Q ss_conf 1758404999999999998745310694999996799972497169999999999999997536999----299999983
Q 001676 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLV 580 (1033)
Q Consensus 505 le~~~fdL~~li~~v~~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G----~I~v~v~~~ 580 (1033)
+...++++.+++++++..+...+..+++.+.+......+..+.+|+.+|.||+.||++||+||++.+ .|.+.+...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
T ss_conf 76613559999999999999999976967985048898825874999999999999998985274789863699999547
Q ss_pred ECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf 01123201333202456767898865556766765334689999987778777603899999769999944582102765
Q 001676 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (1033)
Q Consensus 581 ~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~~~rIFepF 660 (1033)
+ ..+.|+|+|+|+|||++.++++|+||
T Consensus 171 ~-----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f 197 (258)
T 2c2a_A 171 D-----------------------------------------------------GGVLIIVEDNGIGIPDHAKDRIFEQF 197 (258)
T ss_dssp T-----------------------------------------------------TEEEEEEEECSSCCCGGGTTGGGSTT
T ss_pred C-----------------------------------------------------CEEEEEEEECCCCCCHHHHHHHCCCC
T ss_conf 9-----------------------------------------------------86999999658988978988662665
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEECC
Q ss_conf 2358887788996342699999999982998999972799169999987179
Q 001676 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 661 ~q~d~s~sr~~gGtGLGLsI~k~LVelmgG~I~v~S~~g~GstF~f~lp~~~ 712 (1033)
++.+.+.+...+|+||||+|||++++.|||+|++.|.+|+||+|+|++|...
T Consensus 198 ~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 198 YRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCC
T ss_conf 1578887779997615799999999986998999863899828999960787
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=1.00 E-value=1 Score=295.60 Aligned_cols=228 Identities=14% Similarity=0.215 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 9999999999991776578899999-999998359999779999999999999999999999999876339910175840
Q 001676 432 AADVAKSQFLATVSHEIRTPMNGVL-GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (1033)
Q Consensus 432 ~a~~aKs~Fla~iSHELRTPLn~I~-G~lelL~~~~l~~~q~~~l~~i~~s~~~L~~LIndiLd~skie~g~l~le~~~f 510 (1033)
+.+..+++|+++++||+||||+.|. |+.+++.....+...+++++.+..+..+|..++++++++++++.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 89999999999999874328999999999998622682889999999999899999999999987245898201023788
Q ss_pred CHHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC---------EEEEEEE
Q ss_conf 49999999999987453106---94999996799972497169999999999999997536999---------2999999
Q 001676 511 NLRAILDDVLSLFSGKSQDK---GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG---------HIFVTVY 578 (1033)
Q Consensus 511 dL~~li~~v~~~~~~~a~~k---~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G---------~I~v~v~ 578 (1033)
++.+++++++..+...+..+ .+.+.+..+. +..+.+|+.+|.|||.|||+||+||+..| .|.|.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~--~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV--AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEST--TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC--CCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 899999999999999999851899707997047--871565489999999999999999855015677888998899999
Q ss_pred EEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCC
Q ss_conf 83011232013332024567678988655567667653346899999877787776038999997699999445821027
Q 001676 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658 (1033)
Q Consensus 579 ~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~~~rIFe 658 (1033)
..+ ..+.|.|+|+|+|||++.+++||+
T Consensus 274 ~~~-----------------------------------------------------~~v~i~V~D~G~GI~~~~~~~iF~ 300 (388)
T 1gkz_A 274 NND-----------------------------------------------------VDLIIRISDRGGGIAHKDLDRVMD 300 (388)
T ss_dssp ECS-----------------------------------------------------SEEEEEEECCSCCCCTTTTTTTTS
T ss_pred ECC-----------------------------------------------------CEEEEEEEEECCCCCHHHHHHHCC
T ss_conf 479-----------------------------------------------------879999998078869789887638
Q ss_pred CCCCCCCCC--------------------CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEECCCC
Q ss_conf 652358887--------------------78899634269999999998299899997279916999998717998
Q 001676 659 PFMQVGPSI--------------------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (1033)
Q Consensus 659 pF~q~d~s~--------------------sr~~gGtGLGLsI~k~LVelmgG~I~v~S~~g~GstF~f~lp~~~~~ 714 (1033)
|||+.+.+. ++..+|+||||+|||.+++.|||+|++.|.+|.||+|++++|.....
T Consensus 301 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~ 376 (388)
T 1gkz_A 301 YHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGR 376 (388)
T ss_dssp TTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 4450578865544322100000124556789868726789999999999699789996389847999995389988
No 4
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=1.00 E-value=1 Score=295.28 Aligned_cols=220 Identities=19% Similarity=0.242 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHC-CCCEE
Q ss_conf 9999991776578-----899999999998359999779----99999--999999999999999999987633-99101
Q 001676 438 SQFLATVSHEIRT-----PMNGVLGMLDMLMDTELDVTQ----QDYVR--TAQASGKALVSLINEVLDQAKVES-GKLEL 505 (1033)
Q Consensus 438 s~Fla~iSHELRT-----PLn~I~G~lelL~~~~l~~~q----~~~l~--~i~~s~~~L~~LIndiLd~skie~-g~l~l 505 (1033)
.+|+++++||||| ||+.|.|+++++.....+... +.|++ .+...+.+| +|++++++++.++ +...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~ 173 (394)
T 2btz_A 96 LSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPK 173 (394)
T ss_dssp THHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999850220179999999999876057866689999999999985327999--9999999852224678876
Q ss_pred EE----EEECHHHHHHHHHHHHHHHHHC-----CCCEEEEEE--CCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCE--
Q ss_conf 75----8404999999999998745310-----694999996--7999724971699999999999999975369992--
Q 001676 506 EA----VSFNLRAILDDVLSLFSGKSQD-----KGVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-- 572 (1033)
Q Consensus 506 e~----~~fdL~~li~~v~~~~~~~a~~-----k~I~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~-- 572 (1033)
.. .++++.+++++++..+...+.. +++.+.+.. .+..+..+.+|+.+|.|||.|||+||+||+..|+
T Consensus 174 ~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 253 (394)
T 2btz_A 174 HIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHES 253 (394)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 40202688789999999999999999996178997699972267888773899558999999999999999976502566
Q ss_pred ------EEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf ------99999983011232013332024567678988655567667653346899999877787776038999997699
Q 001676 573 ------IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 646 (1033)
Q Consensus 573 ------I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGi 646 (1033)
|.|.+...+ ..+.|.|+|+|+
T Consensus 254 ~~~~~~I~I~~~~~~-----------------------------------------------------~~v~i~V~D~G~ 280 (394)
T 2btz_A 254 SLILPPIKVMVALGE-----------------------------------------------------EDLSIKMSDRGG 280 (394)
T ss_dssp CSCCCCEEEEEEECS-----------------------------------------------------SEEEEEEEECSC
T ss_pred CCCCCCEEEEEEECC-----------------------------------------------------CEEEEEEEECCC
T ss_conf 788998799998079-----------------------------------------------------879999996799
Q ss_pred CCCHHHHHHCCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEECC
Q ss_conf 99944582102765235888-----7788996342699999999982998999972799169999987179
Q 001676 647 GIPLEAQSRIFTPFMQVGPS-----ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 647 GI~~e~~~rIFepF~q~d~s-----~sr~~gGtGLGLsI~k~LVelmgG~I~v~S~~g~GstF~f~lp~~~ 712 (1033)
|||++.+++||+||++.+.+ .++..+|+||||+|||.+++.|||+|++.|.+|.||+|++++|...
T Consensus 281 GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 281 GVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp CCCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCC
T ss_conf 97979998985635667898776667798787447899999999995997899962798569999963898
No 5
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=1.00 E-value=1 Score=292.10 Aligned_cols=220 Identities=16% Similarity=0.221 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHCCCCE
Q ss_conf 99999991776578-----8999999999983599----9977999999--999999999999999999-9876339910
Q 001676 437 KSQFLATVSHEIRT-----PMNGVLGMLDMLMDTE----LDVTQQDYVR--TAQASGKALVSLINEVLD-QAKVESGKLE 504 (1033)
Q Consensus 437 Ks~Fla~iSHELRT-----PLn~I~G~lelL~~~~----l~~~q~~~l~--~i~~s~~~L~~LIndiLd-~skie~g~l~ 504 (1033)
+.+|+++++||||| ||+.|.|+++++.... .....+++++ .+.+.+.+| +|+++|+ +++. .+...
T Consensus 95 ~~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~ 171 (394)
T 2e0a_A 95 ALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNP 171 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCC-CCCCC
T ss_conf 999999999999863100078999999999866435755689999999999999899999--999999986144-67888
Q ss_pred EEE----EEECHHHHHHHHHHHHHHHHHCC-----CCEEEEEE--CCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCE-
Q ss_conf 175----84049999999999987453106-----94999996--7999724971699999999999999975369992-
Q 001676 505 LEA----VSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH- 572 (1033)
Q Consensus 505 le~----~~fdL~~li~~v~~~~~~~a~~k-----~I~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G~- 572 (1033)
+.. .++++.+++++++..+...+..+ ++.+.+.+ .+..+..+.+|+.+|.|||.|||+||+||+..|+
T Consensus 172 ~~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~ 251 (394)
T 2e0a_A 172 SHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQE 251 (394)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 73030157777999999999999999998518999669997225778987279974899999999999999999873156
Q ss_pred -------EEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf -------9999998301123201333202456767898865556766765334689999987778777603899999769
Q 001676 573 -------IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645 (1033)
Q Consensus 573 -------I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 645 (1033)
|.|.+...+ ..+.|.|+|+|
T Consensus 252 ~~~~~~~I~I~~~~~~-----------------------------------------------------~~v~i~V~D~G 278 (394)
T 2e0a_A 252 NQPSLTPIEVIVVLGK-----------------------------------------------------EDLTIKISDRG 278 (394)
T ss_dssp TSSSCCCEEEEEEECS-----------------------------------------------------SEEEEEEEECS
T ss_pred CCCCCCCEEEEEEECC-----------------------------------------------------CEEEEEEEECC
T ss_conf 6688998799999579-----------------------------------------------------87999999679
Q ss_pred CCCCHHHHHHCCCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEECC
Q ss_conf 999944582102765235888------7788996342699999999982998999972799169999987179
Q 001676 646 QGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 646 iGI~~e~~~rIFepF~q~d~s------~sr~~gGtGLGLsI~k~LVelmgG~I~v~S~~g~GstF~f~lp~~~ 712 (1033)
+|||++.+++||+||++.+.+ .++..+|+||||+|||.+++.|||+|.+.|.+|.||+|++++|...
T Consensus 279 ~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 279 GGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp CCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCC
T ss_conf 9959789878757676278987767677789787226899999999994997999954896379999967999
No 6
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=1.00 E-value=1 Score=288.25 Aligned_cols=220 Identities=19% Similarity=0.218 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC----C
Q ss_conf 99999991776578-----8999999999983599997----79999999--99999999999999999987633----9
Q 001676 437 KSQFLATVSHEIRT-----PMNGVLGMLDMLMDTELDV----TQQDYVRT--AQASGKALVSLINEVLDQAKVES----G 501 (1033)
Q Consensus 437 Ks~Fla~iSHELRT-----PLn~I~G~lelL~~~~l~~----~q~~~l~~--i~~s~~~L~~LIndiLd~skie~----g 501 (1033)
+.+|. .++||||| ||+.|.|+++++.....+. ..+++++. +...+.+| +|++++++++.+. +
T Consensus 106 ~~~f~-~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFT-DTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHH-HHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCC
T ss_conf 99999-999999864110259999999999876356866789999999999999999999--999999984543356788
Q ss_pred ---CCEEEEEEECHHHHHHHHHHHHHHHHHCC-----CCEEEEEE--CCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---91017584049999999999987453106-----94999996--799972497169999999999999997536999
Q 001676 502 ---KLELEAVSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG 571 (1033)
Q Consensus 502 ---~l~le~~~fdL~~li~~v~~~~~~~a~~k-----~I~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G 571 (1033)
...+...++++.+++++++..+...+..+ ++.+.+.+ .+..+..+.+|+.+|.|||.|||+||+||+..|
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 84622544577889999999999999999985178995699996347889872799759999999999999999987611
Q ss_pred --------EEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf --------299999983011232013332024567678988655567667653346899999877787776038999997
Q 001676 572 --------HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643 (1033)
Q Consensus 572 --------~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D 643 (1033)
.|.|.+...+ ..+.|.|+|
T Consensus 263 ~~~~~~~~~I~I~~~~~~-----------------------------------------------------~~v~i~V~D 289 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGN-----------------------------------------------------EDLTVKMSD 289 (407)
T ss_dssp STTTCCCCCEEEEEEECS-----------------------------------------------------SEEEEEEEE
T ss_pred CCCCCCCCCEEEEEEECC-----------------------------------------------------CEEEEEEEE
T ss_conf 566788997799999689-----------------------------------------------------879999996
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEECC
Q ss_conf 69999944582102765235888------7788996342699999999982998999972799169999987179
Q 001676 644 TGQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 644 tGiGI~~e~~~rIFepF~q~d~s------~sr~~gGtGLGLsI~k~LVelmgG~I~v~S~~g~GstF~f~lp~~~ 712 (1033)
+|+|||++.+++||+||++.+.+ ..+..+|+||||+|||.+++.|||+|.+.|.+|.||+|++++|...
T Consensus 290 ~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 290 RGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp CSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCC
T ss_conf 689889799998847555078887766667798787077889999999982997999974898569999977899
No 7
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=1.00 E-value=1 Score=284.33 Aligned_cols=221 Identities=18% Similarity=0.238 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HCCCC
Q ss_conf 999999991776578899-----999999998359999----7799999999999--99999999999999876-33991
Q 001676 436 AKSQFLATVSHEIRTPMN-----GVLGMLDMLMDTELD----VTQQDYVRTAQAS--GKALVSLINEVLDQAKV-ESGKL 503 (1033)
Q Consensus 436 aKs~Fla~iSHELRTPLn-----~I~G~lelL~~~~l~----~~q~~~l~~i~~s--~~~L~~LIndiLd~ski-e~g~l 503 (1033)
.+.+|. +++|||||||+ .|.|+++++.....+ ...+++++.+..+ +.+| +|+++|.+.+. +.+..
T Consensus 117 ~~~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~ 193 (419)
T 1y8o_A 117 VLDNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVH 193 (419)
T ss_dssp HHHHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSS
T ss_pred HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCC
T ss_conf 999999-999998541166699999999999987466866689999999999998888999--99999998602246778
Q ss_pred EE----EEEEECHHHHHHHHHHHHHHHHHC-----CCCEEEEEEC--CCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 01----758404999999999998745310-----6949999967--99972497169999999999999997536999-
Q 001676 504 EL----EAVSFNLRAILDDVLSLFSGKSQD-----KGVELAVYIS--DRVPETLIGDPGRFRQIITNLMGNSIKFTEKG- 571 (1033)
Q Consensus 504 ~l----e~~~fdL~~li~~v~~~~~~~a~~-----k~I~l~~~i~--~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G- 571 (1033)
.. ...++++.+++++++..+...+.. +++.+.+... +..+..+.+|+.+|.|||.|||+||+||+..|
T Consensus 194 ~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~ 273 (419)
T 1y8o_A 194 PKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELY 273 (419)
T ss_dssp TTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77545226768899999999999999999850889967999630477899848997399999999999999999987513
Q ss_pred --------EEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf --------299999983011232013332024567678988655567667653346899999877787776038999997
Q 001676 572 --------HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643 (1033)
Q Consensus 572 --------~I~v~v~~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D 643 (1033)
.|.|.+... ...+.|+|+|
T Consensus 274 ~~~~~~~~~I~I~~~~~-----------------------------------------------------~~~v~I~V~D 300 (419)
T 1y8o_A 274 EDRKEGYPAVKTLVTLG-----------------------------------------------------KEDLSIKISD 300 (419)
T ss_dssp TTCSSCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEC-----------------------------------------------------CCEEEEEEEE
T ss_conf 56677899789999957-----------------------------------------------------9879999997
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEECC
Q ss_conf 69999944582102765235888------7788996342699999999982998999972799169999987179
Q 001676 644 TGQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 644 tGiGI~~e~~~rIFepF~q~d~s------~sr~~gGtGLGLsI~k~LVelmgG~I~v~S~~g~GstF~f~lp~~~ 712 (1033)
+|+|||++.+++||+||++.+.+ .++..+|+||||+|||.+++.|||+|.++|.+|.||+|++++|...
T Consensus 301 ~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 301 LGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp CSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCC
T ss_conf 999979899998837334168887766667788687405899999999996997999964899779999965888
No 8
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=1.00 E-value=1 Score=279.03 Aligned_cols=234 Identities=27% Similarity=0.427 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999917765788999999999983599-997799999999999999999999999998763
Q 001676 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499 (1033)
Q Consensus 421 ~~l~~l~~~ae~a~~aKs~Fla~iSHELRTPLn~I~G~lelL~~~~-l~~~q~~~l~~i~~s~~~L~~LIndiLd~skie 499 (1033)
+++.+..++++++++.+.+|++.++|||||||++|.++++++.... .+...+++++.+..+.+++..++++++++++.+
T Consensus 24 ~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~ 103 (268)
T 4ew8_A 24 SALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQID 103 (268)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999889875289999999999862668988999999999999999999999999999864
Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHCCCC-CEEEEEEE
Q ss_conf 39910175840499999999999874531069499999679997249716999999999999999753699-92999999
Q 001676 500 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVY 578 (1033)
Q Consensus 500 ~g~l~le~~~fdL~~li~~v~~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~-G~I~v~v~ 578 (1033)
.+...++..++++..++++++..+...+..+++.+.+.+++..+ .+.+|+..|.+|+.||++||+||++. |.|.|.+.
T Consensus 104 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~ 182 (268)
T 4ew8_A 104 AGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSAR 182 (268)
T ss_dssp TTCCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-EEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 47761266633699999999999876542038249998188782-68569999999999999999971899977999999
Q ss_pred EEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCC
Q ss_conf 83011232013332024567678988655567667653346899999877787776038999997699999445821027
Q 001676 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658 (1033)
Q Consensus 579 ~~~~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~~~rIFe 658 (1033)
..+ ..+.|.|+|+|+||+++.++++|+
T Consensus 183 ~~~-----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~ 209 (268)
T 4ew8_A 183 RAL-----------------------------------------------------GEVRLDVSDTGRGVPFHVQAHIFD 209 (268)
T ss_dssp ECS-----------------------------------------------------SEEEEEEEESSCCCCHHHHTTTTS
T ss_pred ECC-----------------------------------------------------CEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 669-----------------------------------------------------879999973899989899998888
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEECCCC
Q ss_conf 65235888778899634269999999998299899997279916999998717998
Q 001676 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (1033)
Q Consensus 659 pF~q~d~s~sr~~gGtGLGLsI~k~LVelmgG~I~v~S~~g~GstF~f~lp~~~~~ 714 (1033)
||++. ..+|+||||+||+++++.|||+|.+.|.++.|++|++++|.....
T Consensus 210 ~~~~~------~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 210 RFVGR------DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQP 259 (268)
T ss_dssp TTCCC------SSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC--
T ss_pred HHHCC------CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 98668------999984339999999998399899996699977999993688898
No 9
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=1.00 E-value=1 Score=275.87 Aligned_cols=216 Identities=18% Similarity=0.275 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHH
Q ss_conf 99999991776578899999999998359999-77999999999999999999999999987633991017584049999
Q 001676 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (1033)
Q Consensus 437 Ks~Fla~iSHELRTPLn~I~G~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndiLd~skie~g~l~le~~~fdL~~l 515 (1033)
+.+|++.++|||||||++|.++++++.....+ ....++++.+..+.+++..++++++++++.+.+....+..++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 77899997687447599999999998643588478999999999999999999999998997413587667355779999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEEEECCCCCCHHHHHHC
Q ss_conf 99999998745310694999996799972497169999999999999997536999-29999998301123201333202
Q 001676 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETELS 594 (1033)
Q Consensus 516 i~~v~~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT~~G-~I~v~v~~~~~~~~~i~i~~~~~ 594 (1033)
+++++..+...+..+++.+.+.+++.. ..+.+|+.+|.||+.||++||+||++.| .|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~--------------- 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS-IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNA--------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS-CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECS---------------
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCC-EEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC---------------
T ss_conf 999999877789970875898608865-0773689999999999999998739899869999726---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 45676789886555676676533468999998777877760389999976999994458210276523588877889963
Q 001676 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (1033)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~~~rIFepF~q~d~s~sr~~gGt 674 (1033)
+ .|.|+|+|+|||++.++++|+||++.+. ...+|+
T Consensus 146 --------------------------------------~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~ 180 (222)
T 3jz3_A 146 --------------------------------------D----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGS 180 (222)
T ss_dssp --------------------------------------S----EEEEECSCC----------------------------
T ss_pred --------------------------------------C----EEEEEECCCCCCHHHHHHHHHHHCCCCC---CCCCCC
T ss_conf --------------------------------------7----3899878999799999999863250899---999954
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEECCC
Q ss_conf 426999999999829989999727991699999871799
Q 001676 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (1033)
Q Consensus 675 GLGLsI~k~LVelmgG~I~v~S~~g~GstF~f~lp~~~~ 713 (1033)
||||+||+++++.|||+|.++|.+++||+|+|++|....
T Consensus 181 GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~~ 219 (222)
T 3jz3_A 181 GLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHHH 219 (222)
T ss_dssp -CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC--
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCC
T ss_conf 635999999999849989997289995799996367799
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=269.67 Aligned_cols=214 Identities=28% Similarity=0.417 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHH
Q ss_conf 9999999991776578899999999998359999-779999999999999999999999999876339910175840499
Q 001676 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (1033)
Q Consensus 435 ~aKs~Fla~iSHELRTPLn~I~G~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~LIndiLd~skie~g~l~le~~~fdL~ 513 (1033)
.++.+|++.++|||||||++|.++++++.+...+ ....++++.+..+++++..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCHH
T ss_conf 99999998878876464999999999998630691899999999999999999999999998377---555677425799
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEEEECCCCCCHHHHH
Q ss_conf 9999999998745310694999996799972497169999999999999997536-999299999983011232013332
Q 001676 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE 592 (1033)
Q Consensus 514 ~li~~v~~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAIKfT-~~G~I~v~v~~~~~~~~~i~i~~~ 592 (1033)
.++++++..+...+..+++.+.+.+++.. ..+.+|+.+|.||+.||++||+||+ +.|.|.|.+...+
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~----------- 274 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMY----------- 274 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEET-----------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCC-CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-----------
T ss_conf 99999999999999976968999548888-459868999999999999999986557977999999559-----------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 02456767898865556766765334689999987778777603899999769999944582102765235888778899
Q 001676 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (1033)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~~~rIFepF~q~d~s~sr~~g 672 (1033)
..+.|+|+|+|+|||++.++++|+||++.+ .+
T Consensus 275 ------------------------------------------~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~ 306 (349)
T 3a0r_A 275 ------------------------------------------TKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQ 306 (349)
T ss_dssp ------------------------------------------TEEEEEEEEESCCCCGGGGTTTSSSCCCC---------
T ss_pred ------------------------------------------CEEEEEEEECCCCCCHHHHHHCCCCCCCCC------CC
T ss_conf ------------------------------------------889999998999979679955388873079------99
Q ss_pred CCCCHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEEEECC
Q ss_conf 63426999999999-82998999972799169999987179
Q 001676 673 GTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 712 (1033)
Q Consensus 673 GtGLGLsI~k~LVe-lmgG~I~v~S~~g~GstF~f~lp~~~ 712 (1033)
|+||||+||+++++ .|||.|.++|.++ ||+|+|++|...
T Consensus 307 g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 307 GTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 346 (349)
T ss_dssp ---CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEESCT
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCC-CEEEEEEECCCC
T ss_conf 8311099999999971897799980799-479999932897
Done!