Query 001677
Match_columns 1033
No_of_seqs 154 out of 167
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 1.4E-51 3E-56 491.5 24.4 293 13-379 80-397 (894)
2 PLN02784 alpha-amylase 99.9 5.6E-26 1.2E-30 273.0 13.8 128 248-376 70-210 (894)
3 PLN02316 synthase/transferase 97.0 0.021 4.6E-07 73.4 18.6 92 21-126 141-239 (1036)
4 PRK05849 hypothetical protein; 96.8 0.01 2.2E-07 74.4 12.7 175 756-938 571-781 (783)
5 PRK06241 phosphoenolpyruvate s 96.7 0.048 1E-06 69.6 18.5 178 753-939 649-868 (871)
6 PRK08296 hypothetical protein; 96.5 0.0038 8.2E-08 76.1 6.4 97 836-939 503-601 (603)
7 PRK06464 phosphoenolpyruvate s 96.4 0.0023 5.1E-08 80.4 3.7 47 976-1022 13-60 (795)
8 PLN02316 synthase/transferase 95.8 0.28 6E-06 63.6 18.1 88 31-126 326-420 (1036)
9 PF00391 PEP-utilizers: PEP-ut 95.8 0.011 2.4E-07 53.9 4.3 68 861-933 8-78 (80)
10 TIGR01418 PEP_synth phosphoeno 95.6 0.0082 1.8E-07 75.5 3.7 47 976-1022 8-55 (782)
11 PRK06241 phosphoenolpyruvate s 95.5 0.01 2.2E-07 75.6 3.9 43 977-1022 12-54 (871)
12 PF03423 CBM_25: Carbohydrate 95.3 0.1 2.2E-06 48.7 8.7 65 288-373 20-86 (87)
13 PRK05865 hypothetical protein; 95.2 0.038 8.3E-07 70.1 7.5 96 837-941 740-838 (854)
14 PRK09279 pyruvate phosphate di 94.9 0.022 4.7E-07 72.4 4.4 105 836-943 398-513 (879)
15 PRK05878 pyruvate phosphate di 94.8 0.048 1E-06 66.0 6.5 102 834-942 352-456 (530)
16 TIGR01418 PEP_synth phosphoeno 94.5 0.045 9.8E-07 69.1 5.7 98 836-940 358-460 (782)
17 PRK06354 pyruvate kinase; Prov 94.4 0.047 1E-06 66.8 5.4 95 836-937 486-582 (590)
18 TIGR01828 pyru_phos_dikin pyru 94.4 0.04 8.7E-07 70.0 4.9 104 836-942 392-506 (856)
19 PRK06464 phosphoenolpyruvate s 93.9 0.049 1.1E-06 68.8 4.3 98 836-940 360-462 (795)
20 PF03423 CBM_25: Carbohydrate 92.6 0.3 6.5E-06 45.6 6.3 67 46-124 18-86 (87)
21 PRK11377 dihydroxyacetone kina 91.9 0.28 6E-06 58.9 6.3 68 862-939 395-471 (473)
22 COG3848 Phosphohistidine swive 90.3 0.73 1.6E-05 44.8 6.3 97 836-939 6-104 (111)
23 PRK05878 pyruvate phosphate di 89.3 0.37 8E-06 58.6 4.4 50 970-1022 6-58 (530)
24 PRK11061 fused phosphoenolpyru 86.8 0.71 1.5E-05 58.4 4.8 76 862-943 320-399 (748)
25 PRK11177 phosphoenolpyruvate-p 85.7 1 2.3E-05 55.3 5.4 79 861-943 152-233 (575)
26 TIGR01828 pyru_phos_dikin pyru 85.5 0.75 1.6E-05 58.9 4.2 40 980-1022 14-53 (856)
27 COG1080 PtsA Phosphoenolpyruva 85.3 1.3 2.9E-05 53.9 5.8 72 862-943 154-234 (574)
28 TIGR01417 PTS_I_fam phosphoeno 83.5 1.4 3.1E-05 54.0 5.2 77 861-942 151-231 (565)
29 PF11154 DUF2934: Protein of u 83.1 1.3 2.7E-05 36.1 3.0 35 138-175 5-39 (40)
30 COG0574 PpsA Phosphoenolpyruva 75.1 1.5 3.3E-05 55.5 1.8 110 797-915 306-417 (740)
31 PRK03955 hypothetical protein; 73.2 9.9 0.00022 38.6 6.7 96 836-939 6-128 (131)
32 COG3605 PtsP Signal transducti 68.8 6.3 0.00014 48.4 4.8 79 858-941 323-405 (756)
33 PRK09279 pyruvate phosphate di 66.4 4.5 9.7E-05 52.2 3.2 41 979-1022 19-59 (879)
34 COG0574 PpsA Phosphoenolpyruva 56.3 6.4 0.00014 50.0 2.1 42 978-1022 13-54 (740)
35 COG5424 Pyrroloquinoline quino 34.3 46 0.001 37.0 4.1 25 554-579 92-117 (242)
36 PF08424 NRDE-2: NRDE-2, neces 29.7 9E+02 0.02 27.7 13.8 121 436-611 19-139 (321)
37 PF04190 DUF410: Protein of un 27.5 1.9E+02 0.0042 32.3 7.6 87 466-556 53-158 (260)
38 KOG2122 Beta-catenin-binding p 27.2 7.4E+02 0.016 34.9 13.2 69 713-784 367-436 (2195)
39 TIGR02923 AhaC ATP synthase A1 23.0 9.8E+02 0.021 27.1 12.3 84 594-697 96-182 (343)
40 PF12752 SUZ: SUZ domain; Int 23.0 81 0.0018 27.7 2.9 23 151-173 32-54 (59)
41 TIGR03761 ICE_PFL4669 integrat 21.8 3.8E+02 0.0083 29.6 8.3 89 749-841 55-145 (216)
42 KOG3021 Predicted kinase [Gene 20.0 83 0.0018 35.3 2.8 44 461-506 95-138 (313)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.4e-51 Score=491.53 Aligned_cols=293 Identities=25% Similarity=0.474 Sum_probs=240.1
Q ss_pred ceeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCcccccc
Q 001677 13 HNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQTP 78 (1033)
Q Consensus 13 ~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~n~~~~liLHWGv~~~~~--~eW~~P~~--~P------k~~A~~Tp 78 (1033)
..|.|.... ++-|-|. ..++.+.+|.+.+. .+++|+|||||++.++ +||.+||+ +| |++|||||
T Consensus 80 k~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT~ 157 (894)
T PLN02784 80 ETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIETP 157 (894)
T ss_pred eeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEecc
Confidence 367765554 2334444 56788999999866 7788999999999885 79999999 44 89999999
Q ss_pred cccc--cc-ceEEEEEec-CCcceeEEEEEEeccccchhcccCCcccccCCCCCCCCCCCCCchhhHhhhhhhhcccCCC
Q 001677 79 FVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIELRAYQNWERRGR 154 (1033)
Q Consensus 79 f~~s--g~-~~~v~ie~~-d~~i~aI~Fvl~de~~~~W~k~~g~nf~v~L~~~~~~~~~~~ipedLv~~~ay~~We~~Gk 154 (1033)
|+++ |+ .+.|+|||+ ++++.||+||||+|++|+||++||+||+|+||+......+. +...+.+-.|.+
T Consensus 158 f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~-----~~~~~~~~~~~~--- 229 (894)
T PLN02784 158 LKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNN-----VGAKKGFGIWPG--- 229 (894)
T ss_pred ccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccce-----eehhhhcCcCcC---
Confidence 9996 44 788888998 89999999999999999999999999999999976666552 222456667777
Q ss_pred CCCChhHhhHHHHHHHHHHHHHhhcCCChHHHHhhhcCCCCCCCCCChhhhhcCCCC--CCCccCcHHHHHhhhcc--Cc
Q 001677 155 PNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPS--YPCRRHDVEKWLQKNYK--GH 230 (1033)
Q Consensus 155 p~~~~e~~~~ey~~A~~~l~~el~~G~sl~~l~~~~~~~~t~~~~~~~dql~~~~~~--~~~~~~d~~~~l~k~~~--~~ 230 (1033)
.|.+|...+.++++. ++++|=.++++. .+.+++ |++||+ ++
T Consensus 230 ---------------------------~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 274 (894)
T PLN02784 230 ---------------------------ALGQLSNILLKDEGS---PSKEQDKSSSELDSAAERKG-----LKGFYEEMPI 274 (894)
T ss_pred ---------------------------ccccccchhccCCCC---CcccCCCccccccccccccc-----chhhhhccce
Confidence 888888888887755 344331122222 223333 888998 77
Q ss_pred cccCCCCchhHHHHHHhhcCCCcceeeeeeecccEEEEEEEee--CCceEEEEEecCCCCeEEEeeeecCCCCcccCCCC
Q 001677 231 VKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPP 308 (1033)
Q Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~v~~~k~f~l~~el~V~v~~~--~gk~~V~v~td~~~~lVLHWGV~k~~~~eW~~PP~ 308 (1033)
.|+ +.+++. +.|+|+++ ++|++|+|+||+|++|||||||||++++||++||+
T Consensus 275 ~k~--~~~~~~------------------------~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~ 328 (894)
T PLN02784 275 VKR--VAVDNS------------------------VTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPE 328 (894)
T ss_pred eeE--EEecce------------------------EEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCC
Confidence 776 444444 48999884 89999999999999999999999998999999999
Q ss_pred CCCCCccccccceeeeeeecccCCCceeeEEEEEccCCceeEEEEEEec-CCcccccCCcceEEecCCCCCC
Q 001677 309 DMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK 379 (1033)
Q Consensus 309 ~~~P~gS~~~~~A~eT~f~~~~~~~~~~~~leI~l~~d~~~Gi~FVLk~-g~~W~kn~G~DF~Vpl~~~~~~ 379 (1033)
+++|+||++++|||||||++.+++.++++.++| ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus 329 ~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 329 PHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred CCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 999999999999999999999998888988777 7899999999999 7999999999999999987644
No 2
>PLN02784 alpha-amylase
Probab=99.93 E-value=5.6e-26 Score=272.97 Aligned_cols=128 Identities=25% Similarity=0.499 Sum_probs=116.7
Q ss_pred hcCCCcceeeeeeecc-cE------EEEEEEeeCCceEEEEEecCCCCeEEEeeeecCC--CCcccCCCCCCCCCccccc
Q 001677 248 SLGADNVISRQSYHMD-HE------IVVLSKIISSDYHILVAVNMKGAAILHWGISKCS--PGEWLSPPPDMLPEKSKMV 318 (1033)
Q Consensus 248 ~~~~~~v~~~k~f~l~-~e------l~V~v~~~~gk~~V~v~td~~~~lVLHWGV~k~~--~~eW~~PP~~~~P~gS~~~ 318 (1033)
.+...+|+++|+|+|+ .| +.+++++++|+++|+|+||+|++|||||||++++ ++||.+||++++||||+.+
T Consensus 70 ~~~~~~v~~kk~F~v~~~e~ve~~~~v~l~~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~ 149 (894)
T PLN02784 70 TAQSDDVFFKETFPVKRTEKVEGKIYVRLEEKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAI 149 (894)
T ss_pred ccccccceeeeeeeecccceecceeEEEEEccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEe
Confidence 3448999999999999 77 5555577899999999999999999999999987 6999999999999999998
Q ss_pred -cceeeeeeecccCCCceeeE-EEEEccCCceeEEEEEEec--CCcccccCCcceEEecCCC
Q 001677 319 -AGACQTYFTDIATARGSFQM-VDVNLQKRKFVGIQFVIWS--GGSWIKNNGENFFVGLHPM 376 (1033)
Q Consensus 319 -~~A~eT~f~~~~~~~~~~~~-leI~l~~d~~~Gi~FVLk~--g~~W~kn~G~DF~Vpl~~~ 376 (1033)
++||||||++.+.++..+++ |+|+++ +.|+||+||||+ +|+||||||+||||||+..
T Consensus 150 ~~~A~eT~f~~~s~~~~~~~v~iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 150 KDYAIETPLKKSSEGDSFYEVTIDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred cCeEEeccccccccCCcceeEEEEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 89999999999888888886 899985 899999999999 6999999999999999875
No 3
>PLN02316 synthase/transferase
Probab=97.01 E-value=0.021 Score=73.43 Aligned_cols=92 Identities=14% Similarity=0.290 Sum_probs=57.7
Q ss_pred eeEEEeecCCCCCceEEEEEEEeec----CCceEEEeeeeecCCCccccCCCCCCCcccccccccc---ccceEEEEEec
Q 001677 21 MKLQINASGSSIGRNVRVQFQLRNC----ARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKS---GEIYLVTIELR 93 (1033)
Q Consensus 21 ~~~~~~~~~~~~g~~~~v~~~~~n~----~~~liLHWGv~~~~~~eW~~P~~~Pk~~A~~Tpf~~s---g~~~~v~ie~~ 93 (1033)
..+-|.=.-...|+.++|-+-..+. ..++++|=|. ..|...+ .-++++|+ ||.-..++.++
T Consensus 141 ~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-----N~W~~~~-------f~~~~~k~~~~g~ww~~~v~Vp 208 (1036)
T PLN02316 141 NKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-----NGWRWKS-------FTERLEKTELGGDWWSCKLHIP 208 (1036)
T ss_pred CeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-----ccccccc-------cceeccccccCCCeEEEEEecC
Confidence 3333433444556666666654442 3456667433 4565532 22333443 77777766666
Q ss_pred CCcceeEEEEEEeccccchhcccCCcccccCCC
Q 001677 94 DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPE 126 (1033)
Q Consensus 94 d~~i~aI~Fvl~de~~~~W~k~~g~nf~v~L~~ 126 (1033)
+. .+.++||+.|+ .+.|=+|+|.||+++++.
T Consensus 209 ~~-A~~ldfVf~~g-~~~yDNN~~~Df~~~V~~ 239 (1036)
T PLN02316 209 KE-AYKMDFVFFNG-QNVYDNNDHKDFCVEIEG 239 (1036)
T ss_pred cc-ceEEEEEEeCC-ccccccCCCCceEEEeCC
Confidence 55 45599999998 568888899999999863
No 4
>PRK05849 hypothetical protein; Provisional
Probab=96.76 E-value=0.01 Score=74.37 Aligned_cols=175 Identities=12% Similarity=0.095 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHhhCchHHHHHhhhCCCchhhccchHHHHhhhhhHH----HHHHHHhhhHH
Q 001677 756 ALQAKAILDRLQLVLAE------RSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEPV 825 (1033)
Q Consensus 756 ALrlkA~LDR~rr~~e~------~sd~~~~~~q~~a~~lG~alGid~~~v~~F~Ee~IRas~af~----lS~Ll~~L~~~ 825 (1033)
...++..+.++|.+++. ........+-.....+|..+|+++.-+--.+-+.|++-..-. ....+..+-.
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~- 649 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIK- 649 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHH-
Confidence 35567888888877765 244445555566677888899877766555555565422110 0111111100
Q ss_pred HHHH--------------hc-CCCc---------eeeecceEEEEEEEecccccccccccCCCeEEEEeCCCC-cccc-C
Q 001677 826 LRKV--------------AN-LGCW---------QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITG-EEEI-P 879 (1033)
Q Consensus 826 lR~~--------------ag-l~~W---------qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~G-dEEI-p 879 (1033)
-|+. .+ ...| ..++||.+.|.+++|..-. . ...+..|||+..++= ---+ .
T Consensus 650 ~rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~ 725 (783)
T PRK05849 650 RNKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFT 725 (783)
T ss_pred HHHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHh
Confidence 0110 00 0000 2389999999999987542 1 223567888877642 2222 1
Q ss_pred CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhccCCeEEEEEcCCceE
Q 001677 880 VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 938 (1033)
Q Consensus 880 ~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~~Gk~V~l~vss~~V~ 938 (1033)
.+++||||..-+ ..||.+|+||..|||-+..-.....+.+ ..|+.|.+...++.|.
T Consensus 726 ~~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v~ 781 (783)
T PRK05849 726 KGIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRIE 781 (783)
T ss_pred hheeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEEE
Confidence 379999997766 8999999999999999887433212222 2699888887766554
No 5
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=96.72 E-value=0.048 Score=69.62 Aligned_cols=178 Identities=16% Similarity=0.087 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHhhCchHHHHHhhh---CC--CchhhccchHHHHhhhh---hHHHHHH
Q 001677 753 AQWALQAKAILDRLQLVLAE------RSQTYQKKFQPSVKYLGCLL---GV--EKYVIDNFTEELVRAQS---EAVLSIL 818 (1033)
Q Consensus 753 ~~wALrlkA~LDR~rr~~e~------~sd~~~~~~q~~a~~lG~al---Gi--d~~~v~~F~Ee~IRas~---af~lS~L 818 (1033)
......++..+.++|..+.. +.......+-.....+|+.| |+ ++.-+=-++-+.|++-. .....+.
T Consensus 649 ~~~~~~~~~~l~~ar~~~~~RE~~k~~~~~~~~~~R~~~~~~g~~l~~~G~L~~~~Dif~L~~~El~~~~~g~~~~~~~i 728 (871)
T PRK06241 649 EQKAKETKRMISRLRNFIGYREYPKYGRIRRYGIYKQALLKEAEQLVQAGVLAEPEDIFYLTFEELREVVRTNKLDYELI 728 (871)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHCCCCCChhheeeecHHHHHHHHcCCcccHHHH
Confidence 34466778888888877654 33455555667778888877 88 44444434455555311 1111111
Q ss_pred HHhhhHHHHHHh----------c----------CC---Cc--eeeecceEEEEEEEecccccccccccCCCeEEEEeCCC
Q 001677 819 INRFEPVLRKVA----------N----------LG---CW--QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRIT 873 (1033)
Q Consensus 819 l~~L~~~lR~~a----------g----------l~---~W--qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~ 873 (1033)
..+=..+-+... | .. .+ ..+++|.+.|.++++....+. ...++.|||+...+
T Consensus 729 ~~rk~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~ 805 (871)
T PRK06241 729 AKRKEEYELYEKLTPPRVMTSDGEIITGKYKRENLPAGALIGLPVSSGVVEGRARVILNPEDA---DLEKGDILVTAFTD 805 (871)
T ss_pred HHHHHHHHHhhcCCCCceecCCCccccccccccCCCCCceeEeecCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCC
Confidence 111111111000 0 00 11 227889999999998776654 34567899998887
Q ss_pred CccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhc-cCCeEEEEEcCCceEE
Q 001677 874 GEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLK-EGKAVSIRLKSTNLII 939 (1033)
Q Consensus 874 GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~-~Gk~V~l~vss~~V~l 939 (1033)
+ ...| ..+.||||..-+ .+||.+|.||..|||-+++-... .+.+ +|+.|.+....+.|.+
T Consensus 806 p-~~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~~~----~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 806 P-GWTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVENA----TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred H-HHHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEccccH----HhhcCCCCEEEEECCCCEEEE
Confidence 5 3444 589999887666 89999999999999988864332 3333 8999999887766654
No 6
>PRK08296 hypothetical protein; Provisional
Probab=96.50 E-value=0.0038 Score=76.12 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=73.4
Q ss_pred eeeecceEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001677 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1033)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1033)
..++||.+.|.+++|....+.. ...++.|||+...+ -+.+| ..+.||||..-. .+||.+|.||..|||-+.+-.
T Consensus 503 ~~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~td-P~~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~ 578 (603)
T PRK08296 503 FAASPGVVEGPARVIRSADELS--EVQEGEILVCPVTS-PSWAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTG 578 (603)
T ss_pred eecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCC-HHHHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCc
Confidence 3578999999999998866643 34568899987765 34455 589999997665 899999999999999888753
Q ss_pred hHHHHHHHhccCCeEEEEEcCCceEE
Q 001677 914 QNILRNLRLKEGKAVSIRLKSTNLII 939 (1033)
Q Consensus 914 ~~~l~~lr~~~Gk~V~l~vss~~V~l 939 (1033)
.. .. +-.+|+.|.+..+.+.|.+
T Consensus 579 ~a-t~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 579 NA-TK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred cH-hh--hcCCCCEEEEECCCCEEEE
Confidence 32 11 1247999999888776654
No 7
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=96.37 E-value=0.0023 Score=80.38 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=42.0
Q ss_pred cCccCCCCcChhhHhHHHHhhhCC-CCccCCCcccccchHHHHHHhcc
Q 001677 976 VEDFTPDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSEN 1022 (1033)
Q Consensus 976 ~~e~t~~~vGaKAaNlg~L~~~~p-~~~~VP~gvaIPFG~fE~~L~~~ 1022 (1033)
+...+...||+||+||++|++.+| .+|.||+||||||+.|+++|+..
T Consensus 13 ~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~ 60 (795)
T PRK06464 13 LGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT 60 (795)
T ss_pred cCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC
Confidence 456678889999999999999887 68999999999999999999864
No 8
>PLN02316 synthase/transferase
Probab=95.81 E-value=0.28 Score=63.60 Aligned_cols=88 Identities=14% Similarity=0.356 Sum_probs=55.1
Q ss_pred CCCceEEEEEEEee----cCCceEEEeeeeecCCCccccCCCCCCCccccccccccccceEEEEEecCCcceeEEEEEEe
Q 001677 31 SIGRNVRVQFQLRN----CARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKD 106 (1033)
Q Consensus 31 ~~g~~~~v~~~~~n----~~~~liLHWGv~~~~~~eW~~P~~~Pk~~A~~Tpf~~sg~~~~v~ie~~d~~i~aI~Fvl~d 106 (1033)
..|.+++|-.--.| .+.++.+|||.. .|.-....+ ..-+.++ .+.|+.-..+|.++. ..+-+.||+.|
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N-----~W~~~~~~~-~~~~~~~-~~~g~ww~a~v~vP~-~A~~mDfVFsd 397 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYN-----NWIDGLSIV-EKLVKSE-EKDGDWWYAEVVVPE-RALVLDWVFAD 397 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEc-----CCCCCCccc-ceeeccc-CCCCCEEEEEEecCC-CceEEEEEEec
Confidence 34555555444333 377899999995 454433311 0112222 113776666665553 36789999999
Q ss_pred cc---ccchhcccCCcccccCCC
Q 001677 107 GI---HDRWLRLNHGNFRIEIPE 126 (1033)
Q Consensus 107 e~---~~~W~k~~g~nf~v~L~~ 126 (1033)
+. .+.|=+++|.|||++.+.
T Consensus 398 g~~~~~~~yDNn~~~Dyh~~v~~ 420 (1036)
T PLN02316 398 GPPGNARNYDNNGRQDFHAIVPN 420 (1036)
T ss_pred CCcccccccccCCCcceeeecCC
Confidence 73 467888899999999874
No 9
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.78 E-value=0.011 Score=53.91 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=48.9
Q ss_pred cCCCeEEEEeCCCCccccC---CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhccCCeEEEEEc
Q 001677 861 YRRPTIIIASRITGEEEIP---VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 933 (1033)
Q Consensus 861 ~~~P~Illv~~v~GdEEIp---~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~~Gk~V~l~vs 933 (1033)
..+++||+++..+-. +++ ..+.||+|..-. .+||.++.||.+|||.+..-... .. .-.+|.+|.+..+
T Consensus 8 ~~~~~IlV~~~~~p~-~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~~-~~--~i~~g~~v~lDg~ 78 (80)
T PF00391_consen 8 LPEGVILVAEELTPS-DLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGDA-TE--AIKDGDWVTLDGN 78 (80)
T ss_dssp TTSTEEEEESS--TT-CHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTTH-HH--HSCTTEEEEEETT
T ss_pred CCCCEEEEECCCCHH-HHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeeccH-hh--ccCCCCEEEEECC
Confidence 457889999887644 444 599999997765 88999999999999999987542 22 2236888887543
No 10
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=95.63 E-value=0.0082 Score=75.53 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=40.2
Q ss_pred cCccCCCCcChhhHhHHHHhhhCC-CCccCCCcccccchHHHHHHhcc
Q 001677 976 VEDFTPDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSEN 1022 (1033)
Q Consensus 976 ~~e~t~~~vGaKAaNlg~L~~~~p-~~~~VP~gvaIPFG~fE~~L~~~ 1022 (1033)
....+...||+|++||++|++.++ .+|.||+|||||+..|+++|+..
T Consensus 8 ~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~ 55 (782)
T TIGR01418 8 VRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN 55 (782)
T ss_pred cCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC
Confidence 445567789999999999997554 58999999999999999999864
No 11
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.51 E-value=0.01 Score=75.61 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=38.1
Q ss_pred CccCCCCcChhhHhHHHHhhhCCCCccCCCcccccchHHHHHHhcc
Q 001677 977 EDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSEN 1022 (1033)
Q Consensus 977 ~e~t~~~vGaKAaNlg~L~~~~p~~~~VP~gvaIPFG~fE~~L~~~ 1022 (1033)
...+...||+|++||++|++ .+|.||+||||||++|+.+|+..
T Consensus 12 ~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~ 54 (871)
T PRK06241 12 DKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN 54 (871)
T ss_pred CcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC
Confidence 34556789999999999998 68999999999999999999865
No 12
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.26 E-value=0.1 Score=48.72 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=37.5
Q ss_pred CeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccC-CCceeeEEEEEccCCceeEEEEEEecC-CcccccC
Q 001677 288 AAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIAT-ARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (1033)
Q Consensus 288 ~lVLHWGV~k~~~~eW~~PP~~~~P~gS~~~~~A~eT~f~~~~~-~~~~~~~leI~l~~d~~~Gi~FVLk~g-~~W~kn~ 365 (1033)
.+.||+|... |..+|. .+|++... ....+-..+|+++.+.. .|.||++++ ++|=+|+
T Consensus 20 ~v~~~~G~n~-----W~~~~~---------------~~m~~~~~~~~~~~~~~tv~vP~~a~-~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 20 NVHLHGGFNR-----WTHVPG---------------FGMTKMCVPDEGGWWKATVDVPEDAY-VMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEETTS------B-SSS----------------EE-EEESS---TTEEEEEEE--TTTS-EEEEEEE-SSS-EESTT
T ss_pred cEEEEecCCC-----CCcCCC---------------CCcceeeeeecCCEEEEEEEEcCCce-EEEEEEcCCCCcEeCCC
Confidence 4789999754 987764 22222110 00113445677766655 799999996 8999999
Q ss_pred CcceEEec
Q 001677 366 GENFFVGL 373 (1033)
Q Consensus 366 G~DF~Vpl 373 (1033)
|.||+++.
T Consensus 79 g~nY~~~V 86 (87)
T PF03423_consen 79 GANYHFPV 86 (87)
T ss_dssp TS-EEEES
T ss_pred CccEEEEc
Confidence 99999985
No 13
>PRK05865 hypothetical protein; Provisional
Probab=95.19 E-value=0.038 Score=70.12 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=72.1
Q ss_pred eeecceEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeech
Q 001677 837 VISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQ 914 (1033)
Q Consensus 837 vIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~ 914 (1033)
.++||.+.|.+++|. +.......++.|||+...+ ...+| ..+.||||..-. .+||.++-||..|||-+.+-..
T Consensus 740 ~~s~G~v~G~vrvv~---~~~~~~~~~g~ILVa~~td-p~~~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~~ 814 (854)
T PRK05865 740 GVCGGRVRGRVRIVR---PETIDDLQPGEILVAEVTD-VGYTAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQG 814 (854)
T ss_pred eccCCccEEEEEEec---HHHhhhcCCCeEEEeCCCC-HHHHHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEcccc
Confidence 478999999999996 2222345678899987765 33344 589999997665 8999999999999999998533
Q ss_pred HHHHHHHh-ccCCeEEEEEcCCceEEee
Q 001677 915 NILRNLRL-KEGKAVSIRLKSTNLIISD 941 (1033)
Q Consensus 915 ~~l~~lr~-~~Gk~V~l~vss~~V~l~~ 941 (1033)
. .+. .+|+.|.+..+.+.|.+-+
T Consensus 815 a----t~~l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 815 A----TRFLPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred H----hhcCCCCCEEEEECCCcEEEEec
Confidence 2 222 3899999998887776643
No 14
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=94.95 E-value=0.022 Score=72.39 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=70.6
Q ss_pred eeeecceEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001677 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1033)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1033)
...|||.|+|.++....-.. .-....++.|||....+ -++++ ..+.||||..-. ..||.+|-||++|+|-++.-.
T Consensus 398 ~~aspGaa~G~v~~~~~~a~-~~~~~~~~~ILV~~et~-P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG~~ 474 (879)
T PRK09279 398 LPASPGAATGKIVFTADEAE-ALAARGEKVILVRPETS-PEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVGAG 474 (879)
T ss_pred cccCCCeEEEEEEEChHHHH-HhhccCCCEEEEECCCC-HHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEeccC
Confidence 45799999999976322211 11123456777776554 55666 478999997766 899999999999999988743
Q ss_pred hHHHHH---------HHhccCCeEEEEEcCCceEEeecC
Q 001677 914 QNILRN---------LRLKEGKAVSIRLKSTNLIISDIS 943 (1033)
Q Consensus 914 ~~~l~~---------lr~~~Gk~V~l~vss~~V~l~~~~ 943 (1033)
.-.++. -.-..|..|.+..+.+.|......
T Consensus 475 ~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~~~ 513 (879)
T PRK09279 475 ALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGEVP 513 (879)
T ss_pred cceEecccCEEEECCEEecCCCEEEEECCCCEEEECCch
Confidence 321110 112378999988887776655443
No 15
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=94.78 E-value=0.048 Score=65.96 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=70.3
Q ss_pred CceeeecceEEEEEEEeccccccc-ccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEE
Q 001677 834 CWQVISPVEVCGFITSVNELITLQ-NKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT 910 (1033)
Q Consensus 834 ~WqvIspG~A~G~Lv~V~~L~~vq-~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAt 910 (1033)
.=..++||.+.|+++. ...+.. -....++.|||+...+ -++++ ..+.||||..-. ..||.++.||..|||-+.
T Consensus 352 ~G~~as~G~a~G~V~~--~~~~~~~~~~~~~g~ILV~~~t~-P~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~Vv 427 (530)
T PRK05878 352 KGLPACPGVVSGTAYT--DVDEALDAADRGEPVILVRDHTR-PDDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVAVV 427 (530)
T ss_pred cCeeccCceEEEEEEE--CHHHHHHHhhccCCEEEEECCCC-HHHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCEEE
Confidence 3456899999999863 122211 1123456888886665 44555 489999997766 899999999999999999
Q ss_pred eechHHHHHHHhccCCeEEEEEcCCceEEeec
Q 001677 911 CFDQNILRNLRLKEGKAVSIRLKSTNLIISDI 942 (1033)
Q Consensus 911 c~D~~~l~~lr~~~Gk~V~l~vss~~V~l~~~ 942 (1033)
+-... ...+ ..|+.|.+....+.|.-...
T Consensus 428 G~~~~-~~~~--~~G~~VtvDg~~G~V~~G~~ 456 (530)
T PRK05878 428 GCGAG-VAAA--LAGKEITVDGYEGEVRQGVL 456 (530)
T ss_pred cccch-hhcc--CCCCEEEEECCCCEEEeCcc
Confidence 75432 2222 46999999887765544333
No 16
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=94.53 E-value=0.045 Score=69.06 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=73.7
Q ss_pred eeeecceEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001677 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1033)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1033)
..++||.+.|.++++....+.. .+..+.|||+...+ -++++ ..+.||||..-. ..||.++.||+.|||-+.+-.
T Consensus 358 ~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~-p~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg~~ 433 (782)
T TIGR01418 358 RAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTD-PDWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVGTG 433 (782)
T ss_pred cccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCC-HHHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEccc
Confidence 4689999999999999887754 35667899987665 34455 499999997766 899999999999999887732
Q ss_pred hHHHHHHHhccCCeEEEEEcC---CceEEe
Q 001677 914 QNILRNLRLKEGKAVSIRLKS---TNLIIS 940 (1033)
Q Consensus 914 ~~~l~~lr~~~Gk~V~l~vss---~~V~l~ 940 (1033)
+....+ ..|..|.+.... +.|...
T Consensus 434 -~~~~~l--~~G~~v~vDg~~~~~G~v~~~ 460 (782)
T TIGR01418 434 -DATKTL--KDGMEVTVDCAEGDTGYVYAG 460 (782)
T ss_pred -chhhcc--cCCCEEEEEcCCCCCcEEEeC
Confidence 222222 369999998887 555443
No 17
>PRK06354 pyruvate kinase; Provisional
Probab=94.42 E-value=0.047 Score=66.80 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=72.5
Q ss_pred eeeecceEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001677 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1033)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1033)
+..+||.+.|.++++....+. ..+.+|.|||+...+- +.+| ..+.||+|..-. ..||.++-||.+|||-+.+-.
T Consensus 486 ~~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~ 561 (590)
T PRK06354 486 QGIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVK 561 (590)
T ss_pred cccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEecc
Confidence 457899999999998876553 3567789999987764 5555 599999997665 899999999999999998854
Q ss_pred hHHHHHHHhccCCeEEEEEcCCce
Q 001677 914 QNILRNLRLKEGKAVSIRLKSTNL 937 (1033)
Q Consensus 914 ~~~l~~lr~~~Gk~V~l~vss~~V 937 (1033)
.. .. .-..|..|.+....+.|
T Consensus 562 ~~-~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 562 NA-TS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred ch-hh--ccCCCCEEEEECCCCEE
Confidence 32 11 12379999887776544
No 18
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=94.40 E-value=0.04 Score=70.01 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=70.6
Q ss_pred eeeecceEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001677 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1033)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1033)
...+||.+.|+++.+..-.... ....++.|||+...+ -++++ ..+.||||..-. ..||.+|-||++|||-+++-.
T Consensus 392 ~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~-P~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG~~ 468 (856)
T TIGR01828 392 LPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETS-PEDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSGCE 468 (856)
T ss_pred cccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCC-HHHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEccc
Confidence 4579999999997663221111 123557788886665 44565 478999997776 899999999999999998743
Q ss_pred hHHHHH---------HHhccCCeEEEEEcCCceEEeec
Q 001677 914 QNILRN---------LRLKEGKAVSIRLKSTNLIISDI 942 (1033)
Q Consensus 914 ~~~l~~---------lr~~~Gk~V~l~vss~~V~l~~~ 942 (1033)
.-.++. -.-..|..|.+..+.+.|.....
T Consensus 469 ~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~~ 506 (856)
T TIGR01828 469 ELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGEI 506 (856)
T ss_pred ccccccccceeeeCCeEecCCCEEEEECCCCEEEECCC
Confidence 321111 12247888888887766665443
No 19
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=93.93 E-value=0.049 Score=68.83 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=70.6
Q ss_pred eeeecceEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001677 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1033)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1033)
..++||.++|.++++....+.. ....+.|||+...+ .++++ ..+.||||..-. ..||.++.||++|||-+..-.
T Consensus 360 ~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~-p~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg~~ 435 (795)
T PRK06464 360 RAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTD-PDWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVGTG 435 (795)
T ss_pred cccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCC-HHHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEccC
Confidence 4578999999999998877654 34567888886665 34555 499999997765 889999999999999876532
Q ss_pred hHHHHHHHhccCCeEEE---EEcCCceEEe
Q 001677 914 QNILRNLRLKEGKAVSI---RLKSTNLIIS 940 (1033)
Q Consensus 914 ~~~l~~lr~~~Gk~V~l---~vss~~V~l~ 940 (1033)
. ....+ .+|..|.+ ....+.|...
T Consensus 436 ~-~~~~l--~~G~~v~v~~~Dg~~G~v~~~ 462 (795)
T PRK06464 436 N-ATEVL--KDGQEVTVSCAEGDTGYVYEG 462 (795)
T ss_pred c-cccee--cCCCEEEEEeccCCCcEEEeC
Confidence 2 12211 36999888 5555445443
No 20
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=92.65 E-value=0.3 Score=45.63 Aligned_cols=67 Identities=24% Similarity=0.483 Sum_probs=39.9
Q ss_pred CCceEEEeeeeecCCCccccCCC-CC-CCccccccccccccceEEEEEecCCcceeEEEEEEeccccchhcccCCccccc
Q 001677 46 ARTWILHWGFLYRGNTNWFIPAE-HP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIE 123 (1033)
Q Consensus 46 ~~~liLHWGv~~~~~~eW~~P~~-~P-k~~A~~Tpf~~sg~~~~v~ie~~d~~i~aI~Fvl~de~~~~W~k~~g~nf~v~ 123 (1033)
+..+.||+|. +.|..++. .| +..+ + ..++....+|.++.. ...|+||++|. .+.|=+++|.||+++
T Consensus 18 ~~~v~~~~G~-----n~W~~~~~~~m~~~~~---~--~~~~~~~~tv~vP~~-a~~~dfvF~dg-~~~wDNN~g~nY~~~ 85 (87)
T PF03423_consen 18 APNVHLHGGF-----NRWTHVPGFGMTKMCV---P--DEGGWWKATVDVPED-AYVMDFVFNDG-AGNWDNNNGANYHFP 85 (87)
T ss_dssp S-EEEEEETT-----S-B-SSS-EE-EEESS--------TTEEEEEEE--TT-TSEEEEEEE-S-SS-EESTTTS-EEEE
T ss_pred CCcEEEEecC-----CCCCcCCCCCcceeee---e--ecCCEEEEEEEEcCC-ceEEEEEEcCC-CCcEeCCCCccEEEE
Confidence 4568899996 57977765 22 1111 1 115667777777544 44799999998 899999999999987
Q ss_pred C
Q 001677 124 I 124 (1033)
Q Consensus 124 L 124 (1033)
+
T Consensus 86 V 86 (87)
T PF03423_consen 86 V 86 (87)
T ss_dssp S
T ss_pred c
Confidence 4
No 21
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=91.85 E-value=0.28 Score=58.85 Aligned_cols=68 Identities=24% Similarity=0.289 Sum_probs=50.3
Q ss_pred CCCeEEEEeCCCCccccC---------CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhccCCeEEEEE
Q 001677 862 RRPTIIIASRITGEEEIP---------VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 932 (1033)
Q Consensus 862 ~~P~Illv~~v~GdEEIp---------~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~~Gk~V~l~v 932 (1033)
.+|+|||+ +|+. .+|.|++|..-+ ..||.+|.||.+|||-++.-... +. .-..|+.|-+..
T Consensus 395 ~~~~ILVA------~dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~~~-~~--~~~~G~~vilDG 464 (473)
T PRK11377 395 NSPTILLA------ENIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQGEK-LY--AIQPEETLTLDV 464 (473)
T ss_pred CCCEEEEE------CCCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcchhh-Hh--hccCCCEEEEEC
Confidence 56888888 4444 389999997766 88999999999999987764332 22 223688888877
Q ss_pred cCCceEE
Q 001677 933 KSTNLII 939 (1033)
Q Consensus 933 ss~~V~l 939 (1033)
..+.|.+
T Consensus 465 ~~G~v~v 471 (473)
T PRK11377 465 KTQRLNR 471 (473)
T ss_pred CCCEEEe
Confidence 7665554
No 22
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=90.32 E-value=0.73 Score=44.78 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=72.1
Q ss_pred eeeecceEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeec
Q 001677 836 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 913 (1033)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdEEIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D 913 (1033)
|.|-.|.+.|+.++-++-.+... .++...||++.+.++| -+| .-..||||.+.. .-||-+|-+++.|||.+...+
T Consensus 6 qgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std~d-~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~~ 82 (111)
T COG3848 6 QGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTDAD-FVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGVK 82 (111)
T ss_pred eeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCChh-hHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEec
Confidence 56778899999988777766543 3566788988887643 555 488999999988 999999999999999999876
Q ss_pred hHHHHHHHhccCCeEEEEEcCCceEE
Q 001677 914 QNILRNLRLKEGKAVSIRLKSTNLII 939 (1033)
Q Consensus 914 ~~~l~~lr~~~Gk~V~l~vss~~V~l 939 (1033)
... +.+ .+|..|.+..+- ++.+
T Consensus 83 ~at-~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 83 KAT-QLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred chh-hhc--cCCCEEEEeccc-ceEE
Confidence 541 211 278877776553 4444
No 23
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=89.33 E-value=0.37 Score=58.58 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=40.2
Q ss_pred cccccccCc---cCCCCcChhhHhHHHHhhhCCCCccCCCcccccchHHHHHHhcc
Q 001677 970 GKYAVSVED---FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSEN 1022 (1033)
Q Consensus 970 ~~~vi~~~e---~t~~~vGaKAaNlg~L~~~~p~~~~VP~gvaIPFG~fE~~L~~~ 1022 (1033)
..++++..+ ...+++|+|++||++|++ .++.||+||||....|.+.++..
T Consensus 6 ~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~ 58 (530)
T PRK05878 6 ENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADP 58 (530)
T ss_pred CceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcC
Confidence 456666543 345689999999999997 56779999999999999988754
No 24
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=86.76 E-value=0.71 Score=58.35 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=54.7
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhccCCeEEEEEcCCce
Q 001677 862 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (1033)
Q Consensus 862 ~~P~Illv~~v~GdEEIp----~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~~Gk~V~l~vss~~V 937 (1033)
.+|.|||++..+ -.+++ .+|+||+|..-. ..||.+|.||++|||.+..-. ....+ ..|..|.+....+.|
T Consensus 320 ~~~~Ilva~~l~-ps~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~~--~~G~~vilDg~~G~v 393 (748)
T PRK11061 320 PERFILVADELT-ATLLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPSL--LHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCEEEEECCCC-HHHHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhhc--cCCCEEEEECCCCEE
Confidence 557788885544 22333 389999997766 889999999999999876543 22222 359999988888778
Q ss_pred EEeecC
Q 001677 938 IISDIS 943 (1033)
Q Consensus 938 ~l~~~~ 943 (1033)
.+.+..
T Consensus 394 ~vnP~~ 399 (748)
T PRK11061 394 LVDPEP 399 (748)
T ss_pred EeCCCH
Confidence 776543
No 25
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=85.70 E-value=1 Score=55.30 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=55.8
Q ss_pred cCCCeEEEEeCCCCcc--ccC-CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhccCCeEEEEEcCCce
Q 001677 861 YRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 937 (1033)
Q Consensus 861 ~~~P~Illv~~v~GdE--EIp-~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~~Gk~V~l~vss~~V 937 (1033)
+.+|.|||+...+-.+ .++ .+|.||||..-. ..||.++.||++|||-+.+-.. .... -.+|+.|.+....+.|
T Consensus 152 ~~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~~-~~~~--~~~G~~vilDg~~G~v 227 (575)
T PRK11177 152 IQEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTGN-ITKQ--VKNGDYLILDAVNNQI 227 (575)
T ss_pred CCCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcChh-HHhh--ccCCCEEEEECCCCEE
Confidence 3557788886665322 111 489999997765 8899999999999998777533 2222 2369999998888777
Q ss_pred EEeecC
Q 001677 938 IISDIS 943 (1033)
Q Consensus 938 ~l~~~~ 943 (1033)
.+.+..
T Consensus 228 ~~~P~~ 233 (575)
T PRK11177 228 YVNPTN 233 (575)
T ss_pred EECCCH
Confidence 776543
No 26
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=85.51 E-value=0.75 Score=58.91 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCCCcChhhHhHHHHhhhCCCCccCCCcccccchHHHHHHhcc
Q 001677 980 TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSEN 1022 (1033)
Q Consensus 980 t~~~vGaKAaNlg~L~~~~p~~~~VP~gvaIPFG~fE~~L~~~ 1022 (1033)
....+|+|++||++|++ .++.||+||+|....|...++..
T Consensus 14 ~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~ 53 (856)
T TIGR01828 14 MKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANG 53 (856)
T ss_pred hhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcC
Confidence 45579999999999997 37789999999999999998765
No 27
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=85.33 E-value=1.3 Score=53.94 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=56.2
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhccCCeEEEEE
Q 001677 862 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 932 (1033)
Q Consensus 862 ~~P~Illv~~v~GdEEIp~---------~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~~Gk~V~l~v 932 (1033)
++|+||++ +||.| .|.|++|-.-+ ..||.+|.||..+||-+..-...+.. + ..|+.|-+..
T Consensus 154 ~~~~IlvA------~dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~~~~-v--~~g~~viiDg 223 (574)
T COG1080 154 DEEVILVA------EDLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAATLA-V--KDGDTLILDG 223 (574)
T ss_pred CCCeEEEE------CCCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHHhhc-c--cCCCEEEEEC
Confidence 55778888 55553 89999996655 78999999999999999997775332 2 3899999988
Q ss_pred cCCceEEeecC
Q 001677 933 KSTNLIISDIS 943 (1033)
Q Consensus 933 ss~~V~l~~~~ 943 (1033)
..+.|.+.+..
T Consensus 224 ~~G~vi~nP~~ 234 (574)
T COG1080 224 INGEVIVNPDE 234 (574)
T ss_pred CCCeEEECcCH
Confidence 88888876543
No 28
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=83.54 E-value=1.4 Score=54.04 Aligned_cols=77 Identities=22% Similarity=0.162 Sum_probs=55.1
Q ss_pred cCCCeEEEEeCCCCccccC----CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechHHHHHHHhccCCeEEEEEcCCc
Q 001677 861 YRRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTN 936 (1033)
Q Consensus 861 ~~~P~Illv~~v~GdEEIp----~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~~Gk~V~l~vss~~ 936 (1033)
+.+|.|||+...+ -.++. .++.||+|..-. ..||.++.||++|||-+.+-... ... -..|..|.+....+.
T Consensus 151 ~~~~~IlVa~~l~-Ps~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~~~-~~~--~~~G~~v~vDg~~G~ 225 (565)
T TIGR01417 151 IQDEVILVAEDLT-PSETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTKSV-TSQ--VKNGDTVIIDGVKGI 225 (565)
T ss_pred CCCCeEEEecCCC-HHHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcchhH-Hhh--CCCCCEEEEECCCCE
Confidence 3557888886554 22332 379999997665 88999999999999988774332 222 237999999888877
Q ss_pred eEEeec
Q 001677 937 LIISDI 942 (1033)
Q Consensus 937 V~l~~~ 942 (1033)
|.+.+.
T Consensus 226 v~~~P~ 231 (565)
T TIGR01417 226 VIFNPS 231 (565)
T ss_pred EEeCCC
Confidence 777553
No 29
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=83.14 E-value=1.3 Score=36.13 Aligned_cols=35 Identities=40% Similarity=0.763 Sum_probs=27.4
Q ss_pred hhhHhhhhhhhcccCCCCCCChhHhhHHHHHHHHHHHH
Q 001677 138 KDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175 (1033)
Q Consensus 138 edLv~~~ay~~We~~Gkp~~~~e~~~~ey~~A~~~l~~ 175 (1033)
++.|..+||..||..|+|...++ +...+|.++|..
T Consensus 5 e~~Ir~rAY~lwe~~G~p~G~~~---~~W~~AE~el~~ 39 (40)
T PF11154_consen 5 EERIRERAYELWEERGRPEGRDE---EDWLEAERELDA 39 (40)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHHc
Confidence 56788999999999999987664 555777777654
No 30
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=75.11 E-value=1.5 Score=55.46 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=74.4
Q ss_pred hhhccchHHHHhhhhhHHHHHHHHhhhHHHHHHhcCCCceeeecceEEEEEEEecccccccccccCCCeEEEEeCCCCcc
Q 001677 797 YVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEE 876 (1033)
Q Consensus 797 ~~v~~F~Ee~IRas~af~lS~Ll~~L~~~lR~~agl~~WqvIspG~A~G~Lv~V~~L~~vq~~~~~~P~Illv~~v~GdE 876 (1033)
|+++- .+..+|+.+.-..+.+-...++.-.-.. ++. .+||.+.|.++.+...... ......+||+....+ -+
T Consensus 306 w~id~-~~~ilq~rP~t~~~~~~~~~~~~~~~~~---g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~-pd 377 (740)
T COG0574 306 WAIDG-KLYILQARPETVLSLLHPVEDRGRALLK---GIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTD-PD 377 (740)
T ss_pred hhhcC-ceEEEEecCcccccccccccccccceee---eee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCC-HH
Confidence 44443 5567888887777777666666111111 222 8999999998888777776 233456777776554 44
Q ss_pred ccC--CCcEEEEcCCCCCcchhhhhhcccCCceEEEeechH
Q 001677 877 EIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 915 (1033)
Q Consensus 877 EIp--~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc~D~~ 915 (1033)
.+| ....||+|-+.. ..||-+|.||.+|+|-+..-...
T Consensus 378 ~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~~~ 417 (740)
T COG0574 378 WVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTGSA 417 (740)
T ss_pred HhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCchh
Confidence 566 255677766555 99999999999999988875554
No 31
>PRK03955 hypothetical protein; Reviewed
Probab=73.24 E-value=9.9 Score=38.61 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=63.9
Q ss_pred eeeecceEEEEEEEeccccc----ccccc-------cC------CCeEEEEeCCCCcc--------ccC--CCcEEEEcC
Q 001677 836 QVISPVEVCGFITSVNELIT----LQNKV-------YR------RPTIIIASRITGEE--------EIP--VGVVAVLTP 888 (1033)
Q Consensus 836 qvIspG~A~G~Lv~V~~L~~----vq~~~-------~~------~P~Illv~~v~GdE--------EIp--~~VvGVlt~ 888 (1033)
..+++|.|.|.+++++.-.. +.+.+ -+ ...||++....|-- =+. ..=+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 47899999999888864322 11111 11 45788887777651 000 123677877
Q ss_pred CCCCcchhhhhhcccCCceEEEeechHHHHHHHhccCCeEEEEEcCCceEE
Q 001677 889 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLII 939 (1033)
Q Consensus 889 ~~pd~LSHvaVRARn~gVpfAtc~D~~~l~~lr~~~Gk~V~l~vss~~V~l 939 (1033)
+.-+.|||=++-| +||.+...+ .+.| .+|.+|++..+.+.|.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l--~~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKL--KDGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceec--CCCCEEEEeCCCCEEEE
Confidence 6666999999999 999999766 3322 28999999866655554
No 32
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=68.76 E-value=6.3 Score=48.43 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=54.0
Q ss_pred ccccCCCeEEEEeCCCCcc--ccC-CCcEEEEcCCCCCcchhhhhhcccCCceEEEe-echHHHHHHHhccCCeEEEEEc
Q 001677 858 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLK 933 (1033)
Q Consensus 858 ~~~~~~P~Illv~~v~GdE--EIp-~~VvGVlt~~~pd~LSHvaVRARn~gVpfAtc-~D~~~l~~lr~~~Gk~V~l~vs 933 (1033)
..++.++.|||++..+--+ |.| ...+||++.+-. .-||++|.||.+|||-+-. -+-. .+..+|..+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i~----~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGIV----PSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCcc----hhhhcCCcEEEECC
Confidence 4557789999997655332 455 589999997765 7899999999999998876 2222 23346665555444
Q ss_pred CCceEEee
Q 001677 934 STNLIISD 941 (1033)
Q Consensus 934 s~~V~l~~ 941 (1033)
.+.|.+++
T Consensus 398 ~gev~l~P 405 (756)
T COG3605 398 RGEVHLRP 405 (756)
T ss_pred cceEEeCC
Confidence 44555544
No 33
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=66.40 E-value=4.5 Score=52.22 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=35.6
Q ss_pred cCCCCcChhhHhHHHHhhhCCCCccCCCcccccchHHHHHHhcc
Q 001677 979 FTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSEN 1022 (1033)
Q Consensus 979 ~t~~~vGaKAaNlg~L~~~~p~~~~VP~gvaIPFG~fE~~L~~~ 1022 (1033)
...+++|+|++||++|.+. ++.||+||+|..-++...++..
T Consensus 19 ~~~~llGgKga~L~em~~~---glpVPpgF~itt~ac~~~~~~~ 59 (879)
T PRK09279 19 SMKDLLGGKGANLAEMTNL---GLPVPPGFTITTEACNEYYANG 59 (879)
T ss_pred hHHhhcCHHHHhHHHHHHC---CCCCCCcEEEcHHHHHHHHhcC
Confidence 4457899999999999874 6779999999999999988765
No 34
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=56.31 E-value=6.4 Score=49.98 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=37.9
Q ss_pred ccCCCCcChhhHhHHHHhhhCCCCccCCCcccccchHHHHHHhcc
Q 001677 978 DFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSEN 1022 (1033)
Q Consensus 978 e~t~~~vGaKAaNlg~L~~~~p~~~~VP~gvaIPFG~fE~~L~~~ 1022 (1033)
..+..++|+|.+||++|.+ .++.||+||||.=-+|..+++..
T Consensus 13 ~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~ 54 (740)
T COG0574 13 LEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN 54 (740)
T ss_pred cchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc
Confidence 4567889999999999998 78999999999999999999875
No 35
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=34.35 E-value=46 Score=37.04 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.5
Q ss_pred ChhhHHHHhhhC-CCChhhhhcCCCCc
Q 001677 554 KIDAYWQTLNCH-GLSKQKLASYDRPI 579 (1033)
Q Consensus 554 ~~~~yW~~L~~~-Git~erl~s~dr~I 579 (1033)
|.-++|..+-+. |+|+|++.|++ |.
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-pl 117 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-PL 117 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-CC
Confidence 667899999997 99999999999 76
No 36
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.69 E-value=9e+02 Score=27.73 Aligned_cols=121 Identities=12% Similarity=0.259 Sum_probs=73.9
Q ss_pred HHHHHhhhccceeeeecCCCCCchhhHHHHHHHHHHHHHHHccCCCcHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHhh
Q 001677 436 IMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRN 515 (1033)
Q Consensus 436 i~vwlRf~a~rqL~W~~nyN~kpr~ia~aq~~lt~~l~~~~~~~p~~R~~~R~~l~tv~RGG~g~~Gq~IRd~IL~I~r~ 515 (1033)
|=.||+|.....-.=...-+.+....+-+..+| ..+.++...+|..-.|....|....+=
T Consensus 19 i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~kl-silerAL~~np~~~~L~l~~l~~~~~~------------------- 78 (321)
T PF08424_consen 19 IEAWLELIEFQDELFRLQSSSKAERRALAERKL-SILERALKHNPDSERLLLGYLEEGEKV------------------- 78 (321)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHh-------------------
Confidence 345777765543211111111223333333333 345666666886666666655543222
Q ss_pred cCCCcchHHHHHhhhcCCCCCChHHHHHHHHHHHHhCCChhhHHHHhhhCCCChhhhhcCCCCcccCCCcCchhhhhHHH
Q 001677 516 NGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTR 595 (1033)
Q Consensus 516 N~~kgg~meeWHQKLHnNTtPDDV~ICea~l~~l~s~~~~~~yW~~L~~~Git~erl~s~dr~I~~eP~~~~~~~~~li~ 595 (1033)
.-..-...+|.+=|.. -|.+..+=.+||+|.-+++ .....+....
T Consensus 79 -~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~--------------------------------~~f~v~~~~~ 123 (321)
T PF08424_consen 79 -WDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNF--------------------------------ASFTVSDVRD 123 (321)
T ss_pred -CCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHh--------------------------------ccCcHHHHHH
Confidence 2222345778888876 4669999999999999973 3445677888
Q ss_pred HHHHHHHHHHhhcCcc
Q 001677 596 DLTMYLKTLKAVHSGA 611 (1033)
Q Consensus 596 df~~yl~~LK~vHsga 611 (1033)
-|..-|+.|+..++|.
T Consensus 124 ~y~~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGR 139 (321)
T ss_pred HHHHHHHHHHHhhccc
Confidence 8888888888888887
No 37
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.48 E-value=1.9e+02 Score=32.28 Aligned_cols=87 Identities=18% Similarity=0.383 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhhcCCCCCCCCch-hhHHHHHHHH---------hhcCCCcc---------hHHHH
Q 001677 466 DRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQ-RIRDEILVIQ---------RNNGCKTG---------MMEEW 526 (1033)
Q Consensus 466 ~~lt~~l~~~~~~~p~~R~~~R~~l~tv~RGG~g~~Gq-~IRd~IL~I~---------r~N~~kgg---------~meeW 526 (1033)
.||+..+...-.+.|+-..+++.++.=- +.|+.-.|+ ++..-|=.+. ++|=+.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6788877777778888888888887766 666666777 4443332222 22212222 56788
Q ss_pred HhhhcCCCCCChHHHHHHHHHHHHhCCChh
Q 001677 527 HQKLHNNTSPDDIIICEALLNYIRCGFKID 556 (1033)
Q Consensus 527 HQKLHnNTtPDDV~ICea~l~~l~s~~~~~ 556 (1033)
-++ ...+-.|+.|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 556666999999999999988 643
No 38
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=27.18 E-value=7.4e+02 Score=34.86 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhccccCCCchHHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCch
Q 001677 713 IMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQT-YQKKFQPS 784 (1033)
Q Consensus 713 ~l~~~~l~l~Nl~ls~~~n~eL~~cl~~W~~~~~~~~~~~~~wALrlkA~LDR~rr~~e~~sd~-~~~~~q~~ 784 (1033)
+-+++.|+|.||-|+-..|....+..+..-++.-+.-..+.+.-++ |+--+-|-+-|.+|- +.+++++.
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~Q---V~AsvLRNLSWRAD~nmKkvLrE~ 436 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQ---VYASVLRNLSWRADSNMKKVLRET 436 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHH---HHHHHHHhccccccccHHHHHHhh
Confidence 5678899999999998888887777776665554322223333333 333344455555542 34444443
No 39
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=23.00 E-value=9.8e+02 Score=27.10 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhcCccCHHHHHHHHHcCCCccccCCCCCCchh-HHHHHHHHHhhcccCChhHHHHHHHHH--Hhhhc
Q 001677 594 TRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSK-LRECLTFIKAHIHDESINQLMEKLVDS--RIELH 670 (1033)
Q Consensus 594 i~df~~yl~~LK~vHsgaDL~sa~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~vl~~~~~~d~~~~l~~~vea--R~~L~ 670 (1033)
--|+.|-..+||+.++|.|-+...+.+. |.+.++.. +..++ +..|...+++.+..- .+-|.
T Consensus 96 ~~di~Nik~ilR~~~~g~~~~~i~~~l~---------~~g~~~~~~l~~l~-------~~~~~~e~~~~L~~t~y~~~l~ 159 (343)
T TIGR02923 96 KWDVWNIKTLIRAKYANASAEEVEDLLI---------PAGEFLEKRIKELA-------EAKTIEEIVEALEGTPYYGPLQ 159 (343)
T ss_pred HHhHHHHHHHHHHHHcCCCHHHHHHHhc---------cccccCHHHHHHHH-------cCCCHHHHHHHcCCCccHHHHH
Confidence 4588899999999999999877554432 44555442 44333 334433332211100 11111
Q ss_pred ccccCCCCCchhhhhHHHHHHHHHHHH
Q 001677 671 PVLGTARGRAKDLLFLDISLASAIKTT 697 (1033)
Q Consensus 671 ~~~~~~~~~~rdvl~LDiaLe~~~r~~ 697 (1033)
..+ ...+|+..+|.+|+..+-+.
T Consensus 160 ~~~----~~~~~l~~~E~~Ld~~y~~~ 182 (343)
T TIGR02923 160 EAL----AGNGDLSPIENELDRMYYEK 182 (343)
T ss_pred HHH----hcCCCHHHHHHHHHHHHHHH
Confidence 111 12478999999999954443
No 40
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=22.96 E-value=81 Score=27.66 Aligned_cols=23 Identities=26% Similarity=0.614 Sum_probs=19.2
Q ss_pred cCCCCCCChhHhhHHHHHHHHHH
Q 001677 151 RRGRPNNSPQQQQKDYNDALKEL 173 (1033)
Q Consensus 151 ~~Gkp~~~~e~~~~ey~~A~~~l 173 (1033)
...++.-|-|+++++|++||.-|
T Consensus 32 ~~~~~~kSlEERE~eY~~AR~RI 54 (59)
T PF12752_consen 32 RKKRPSKSLEEREAEYAEARARI 54 (59)
T ss_pred ccccccCCHHHHHHHHHHHHHHH
Confidence 34577888899999999999866
No 41
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=21.78 E-value=3.8e+02 Score=29.64 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=74.3
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHhhhCCCchhhccchHHHHhhhhhHHHHHHHHhhhHHH
Q 001677 749 RTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQ--PSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVL 826 (1033)
Q Consensus 749 ~~~~~~wALrlkA~LDR~rr~~e~~sd~~~~~~q--~~a~~lG~alGid~~~v~~F~Ee~IRas~af~lS~Ll~~L~~~l 826 (1033)
.+....|-+++...+..++..+..-.+.+-+.+. |..-.|+....+.|..+.+| +++-..|++.-||...|-.+
T Consensus 55 dPyAD~~Ll~~E~~l~~~~~~l~~~~~~l~~~l~~~p~~l~ls~~~s~~P~~i~L~----~~splGy~~v~LL~d~D~l~ 130 (216)
T TIGR03761 55 DPYADWALLRIEEKLLSARQEMQALLQRLDDLLAQLPPALDLSENLSVSPLTVPLF----FRSPLGYRAVYLLVDYDQLA 130 (216)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhccCCCCceeeee----cCChHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999988888887 77788899999999999988 58889999999999999999
Q ss_pred HHHhcCCCceeeecc
Q 001677 827 RKVANLGCWQVISPV 841 (1033)
Q Consensus 827 R~~agl~~WqvIspG 841 (1033)
|.+.-....-.|+..
T Consensus 131 r~~l~a~h~glisr~ 145 (216)
T TIGR03761 131 RRVLLAHHYGLISRQ 145 (216)
T ss_pred HHHHHHHHHhcCCHH
Confidence 997665555555543
No 42
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=20.04 E-value=83 Score=35.27 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHccCCCcHHHHHHHHhhcCCCCCCCCchhhH
Q 001677 461 ISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIR 506 (1033)
Q Consensus 461 ia~aq~~lt~~l~~~~~~~p~~R~~~R~~l~tv~RGG~g~~Gq~IR 506 (1033)
+++-|..|...||+.+..+...++..|-=..||||||+ .|.+|-
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~~ 138 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQIG 138 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--cccccc
Confidence 45667889999999998889999988888999999998 566554
Done!