BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001679
(1032 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 315 bits (807), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 167/331 (50%), Positives = 223/331 (67%), Gaps = 5/331 (1%)
Query: 375 TRGNIRVFCRCRPLNKVEISAGCAT-VVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPND 433
++GNIRV R RP+ K + AT V FDA D + +L +F+ D+VF+P
Sbjct: 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH-KGKPVSFELDKVFSPQA 60
Query: 434 GQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAK 493
Q DVF + LV S +DG+NVCIFAYGQTG GKT+TMEGT ++ G+N R L+ LF +
Sbjct: 61 SQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQ 120
Query: 494 ERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSH--HVPGIVEANVNSI 551
E++ + Y I+VS E+YNE +RDLL P +KLEI+ +GS +VPG+ E V S+
Sbjct: 121 EKASDWEYTITVSAAEIYNEVLRDLLGKEP-QEKLEIRLCPDGSGQLYVPGLTEFQVQSV 179
Query: 552 REAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSE 611
+ V + G + R N+NEHSSRSH +L + VR + +G T KL LVDLAGSE
Sbjct: 180 DDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE 239
Query: 612 RLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKT 671
R+ ++ +G RL+EAQ+IN+SLSALGDVI +L ++ H+P+RNSKLT+LLQDSL GDSKT
Sbjct: 240 RVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKT 299
Query: 672 LMFVQISPSEQDLSETLSSLNFATQVRGVEL 702
LM VQ+SP E++ SETL SL FA +VR VEL
Sbjct: 300 LMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 294 bits (752), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/395 (41%), Positives = 244/395 (61%), Gaps = 17/395 (4%)
Query: 365 RKELYNQIQQTRGNIRVFCRCRPLNKVEIS----AGCATVVDFDAAKDGELGVLTGSSTR 420
RK YN I+ +G IRV+CR RPLN+ E S TV +F + R
Sbjct: 1 RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWK------DDKR 54
Query: 421 KTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGV 480
K +DRVF Q D+F D LV S +DGYNVCIFAYGQTG+GKTFT+ G E + G+
Sbjct: 55 KQHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGL 114
Query: 481 NYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-KLEIKQSSEGSHH 539
R ++LF I K S+ F++++ ++E+Y + + DLL + KLEIK+ S+G
Sbjct: 115 TPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVF 174
Query: 540 VPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTK 599
V + ++++ E +L+ GS R V N+NE SSRSH +L +++ + +L + +
Sbjct: 175 VENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAAR 234
Query: 600 SKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTH 659
KL VDLAGSER+ ++ G++LKEAQ+IN+SLSALGDVI +L++ + HIPYRN KLT
Sbjct: 235 GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTM 294
Query: 660 LLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGPARKQIDTSELQKMKV 719
L+ DSLGG++KTLMFV +SP+E +L ET +SL +A++VR + P+ K I + E+ ++K
Sbjct: 295 LMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPS-KHISSKEMVRLKK 353
Query: 720 MLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQ 754
++ ++ + K E EE+L ++E KD+
Sbjct: 354 LVAYWKEQAGKKGE-----EEDLVDIEEDRTRKDE 383
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 278 bits (710), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 232/372 (62%), Gaps = 14/372 (3%)
Query: 376 RGNIRVFCRCRPLNKVEISA----GCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTP 431
+G IRV+CR RPL + EI A +V +F L K +DRVF
Sbjct: 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEH------LWKDDKAKQHMYDRVFDG 57
Query: 432 NDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEI 491
N Q DVF D LV S +DGYNVCIFAYGQTG+GKTFT+ G + + G+ R + +LF I
Sbjct: 58 NATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRI 117
Query: 492 AKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-KLEIKQSSEGSHHVPGIVEANVNS 550
K+ S F++++ ++E+Y + + DLL + KL+IK+ S+G V + ++++
Sbjct: 118 MKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIST 177
Query: 551 IREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGS 610
E ++Q GS R +NE SSRSH ++ +++ + NL + + KL VDLAGS
Sbjct: 178 YEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGS 237
Query: 611 ERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSK 670
ER+ ++ G++LKEAQ+IN+SLSALGDVI +L++ + HIPYRN KLT L+ DSLGG++K
Sbjct: 238 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAK 297
Query: 671 TLMFVQISPSEQDLSETLSSLNFATQVRGVELGPARKQIDTSELQKMKVMLEKARQDSRS 730
TLMFV ISP+E +L ET +SL +A++VR + P+ K + + E+ ++K ++ ++ +
Sbjct: 298 TLMFVNISPAESNLDETHNSLTYASRVRSIVNDPS-KNVSSKEVARLKKLVSYWKEQAGR 356
Query: 731 K--DESLRKLEE 740
K DE L ++++
Sbjct: 357 KGDDEELEEIQD 368
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 263 bits (673), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 165/417 (39%), Positives = 237/417 (56%), Gaps = 36/417 (8%)
Query: 303 AAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVIGVQALVAQCEDFKMKYSEEQ 362
A+ ++ L+EK+ +K++ + L + + + ELN+++I +E+
Sbjct: 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI-----------------KEE 44
Query: 363 AKRKELYNQIQQTRGNIRVFCRCRP-LNKVEIS-AGCATVVDFD---AAKDGELGVLTGS 417
R+ L+N++Q+ RGNIRV+ R RP L +E S V +FD + E+ + +
Sbjct: 45 TVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNT 104
Query: 418 STRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQS 477
+ FKFD++F D VDVF + LV S LDGYNV IFAYGQTG+GKTFTM
Sbjct: 105 AQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM--LNPG 162
Query: 478 RGVNYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-------KLE 529
G+ T+ +F I K +++ + Y ++ +E+YNE I DLL + +K K E
Sbjct: 163 DGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHE 222
Query: 530 IKQSSEGSHHVPGIVEA-NVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVR 588
I+ E V + + S +L+ + R+ S NEHSSRSH + I +
Sbjct: 223 IRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 282
Query: 589 AKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA---T 645
N +G + L LVDLAGSER+ + V GDRL+E QNIN+SLSALGDVI++L +
Sbjct: 283 GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS 342
Query: 646 KSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVEL 702
HIP+RNSKLT+LLQ SL GDSKTLMFV ISPS ++ETL+SL FA++V L
Sbjct: 343 TKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 258 bits (658), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/411 (38%), Positives = 227/411 (55%), Gaps = 25/411 (6%)
Query: 308 DLQEKVKMMKKEHSQLSREAHECADSIPELNKMVIGVQALVAQCEDFKMKYSEEQAKRKE 367
+LQ + +K EH+ LS E EL + + A+ E K + + +RKE
Sbjct: 1 ELQAIHEKVKTEHAALSTEVVHLRQRTEELLRCN---EQQAAELETCKEQLFQSNMERKE 57
Query: 368 LYNQIQQTRGNIRVFCRCRPLNKVEISAGCAT----------VVDFDAAKDGELGVLTGS 417
L+N + RGNIRVFCR RP + E + C T + DA ++G
Sbjct: 58 LHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMG----- 112
Query: 418 STRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQS 477
++ F FD+VF P Q D+F SPL+ S LDGYN+CIFAYGQTG+GKT+TM+G +S
Sbjct: 113 --QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 170
Query: 478 RGVNYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEG 536
GV RT++ LF+ I R+ + Y I + LE+YNE + DLL+ ++ + ++++
Sbjct: 171 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 230
Query: 537 SHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGE 596
+V I E V +++ T RA S NE SSRSH + + + ++ E
Sbjct: 231 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 290
Query: 597 CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSK 656
+ + LVDLAGSE + R+ E +NINRSLS L +VI +L K +HIPYRNSK
Sbjct: 291 ISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSK 346
Query: 657 LTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGPARK 707
LTHLL SLGG+SKTLMF+ +SP + E++ SL FA V ++ A++
Sbjct: 347 LTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR 397
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 210/355 (59%), Gaps = 19/355 (5%)
Query: 365 RKELYNQIQQTRGNIRVFCRCRP-LNKVEIS-AGCATVVDFD---AAKDGELGVLTGSST 419
R+ L+N++Q+ RGNIRV+CR RP L +E S V +FD + E+ + ++
Sbjct: 2 RRTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQ 61
Query: 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRG 479
FKFD++F D VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G
Sbjct: 62 VHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDG 119
Query: 480 VNYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-------KLEIK 531
+ T+ +F I K +++ + Y ++ +E+YNE I DLL + +K K EI+
Sbjct: 120 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 179
Query: 532 QSSEGSHHVPGIVEA-NVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK 590
E V + + S +L+ + R+ S NEHSSRSH + I +
Sbjct: 180 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS 239
Query: 591 NLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA---TKS 647
N +G + L LVDLAGSER+ + V GDRL+E QNIN+SLS LGDVI++L +
Sbjct: 240 NAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 299
Query: 648 NHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVEL 702
HIP+RNSKLT+LLQ SL GDSKTLMFV ISPS ++ETL+SL FA++V L
Sbjct: 300 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 255 bits (652), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 147/371 (39%), Positives = 211/371 (56%), Gaps = 22/371 (5%)
Query: 348 VAQCEDFKMKYSEEQAKRKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCAT-------- 399
A+ E K + + +RKEL+N + RGNIRVFCR RP + E + C T
Sbjct: 24 AAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDEST 83
Query: 400 --VVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCI 457
+ DA ++G ++ F FD+VF P Q D+F SPL+ S LDGYN+CI
Sbjct: 84 VELQSIDAQAKSKMG-------QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICI 136
Query: 458 FAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIR 516
FAYGQTG+GKT+TM+G +S GV RT++ LF+ I R+ + Y I + LE+YNE +
Sbjct: 137 FAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLY 196
Query: 517 DLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHS 576
DLL+ ++ + ++++ +V I E V +++ T RA S NE S
Sbjct: 197 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 256
Query: 577 SRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSAL 636
SRSH + + + ++ E + + LVDLAGSE + R+ E +NINRSLS L
Sbjct: 257 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSEL 312
Query: 637 GDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQ 696
+VI +L K +HIPYRNSKLTHLL SLGG+SKTLMF+ +SP + E++ SL FA
Sbjct: 313 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 372
Query: 697 VRGVELGPARK 707
V ++ A++
Sbjct: 373 VNSCKMTKAKR 383
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 255 bits (651), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 215/352 (61%), Gaps = 17/352 (4%)
Query: 365 RKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVL----TGSSTR 420
R+ LY Q + ++RV RCRP+N E +A VVD D K G++ V T
Sbjct: 11 RENLY--FQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDV-KLGQVSVKNPKGTAHEMP 67
Query: 421 KTFKFDRVFTPNDGQVDVFADA-SPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTE---Q 476
KTF FD V+ N Q +++ + PLV SVL G+N IFAYGQTGTGKT+TMEG +
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPE 127
Query: 477 SRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEG 536
RGV + + +F RS+ Y + S LE+Y E+IRDLL+ T K+LE+K+ +
Sbjct: 128 KRGVIPNSFDHIF-THISRSQNQQYLVRASYLEIYQEEIRDLLSKDQT-KRLELKERPDT 185
Query: 537 SHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNL-ISG 595
+V + S++E +V+ G+ R+VG+ N+NEHSSRSH + I + + + G
Sbjct: 186 GVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDG 245
Query: 596 E--CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA-TKSNHIPY 652
E KL LVDLAGSER +T QG+RLKEA IN SLSALG+VI +L KS HIPY
Sbjct: 246 ENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPY 305
Query: 653 RNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGP 704
R+SKLT LLQDSLGG++KT+M + P+ ++ ETL++L +A + + ++ P
Sbjct: 306 RDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKP 357
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 217/363 (59%), Gaps = 31/363 (8%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVD 437
+I+V R RP N+VEI +G +V F + + + +F FDRVF + Q D
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGP---DTCTVDSKEAQGSFTFDRVFDMSCKQSD 63
Query: 438 VFADAS--PLVISVLDGYNVCIFAYGQTGTGKTFTMEGTE----QSRGVNYRTLEQLFEI 491
+F D S P V +L+GYN +FAYGQTG GK++TM GT RGV R +EQ+F
Sbjct: 64 IF-DFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTS 122
Query: 492 AKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSI 551
+ Y + VS +E+Y E+IRDLLA P + L + + +V G++E V+S+
Sbjct: 123 ILSSAANIEYTVRVSYMEIYMERIRDLLA--PQNDNLPVHEEKNRGVYVKGLLEIYVSSV 180
Query: 552 REAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSE 611
+E + V++ G +ARAV + N+N+ SSRSH + I + KN+ +G +L+LVDLAGSE
Sbjct: 181 QEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSE 240
Query: 612 RLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA-TKSNHIPYRNSKLTHLLQDSLGGDSK 670
++ +T G L+EA+ IN+SLSALG VI +L KS+H+PYR+SKLT +LQ+SLGG+S+
Sbjct: 241 KVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSR 300
Query: 671 TLMFVQISPSEQDLSETLSSLNFATQVRGV--------ELGPARKQIDTSELQKMKVMLE 722
T + + SPS + +ETLS+L F + + + EL PA ++K ML
Sbjct: 301 TTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPA----------ELKQMLA 350
Query: 723 KAR 725
KA+
Sbjct: 351 KAK 353
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 210/371 (56%), Gaps = 22/371 (5%)
Query: 348 VAQCEDFKMKYSEEQAKRKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCAT-------- 399
A+ E K + + +RKEL+N + RGNIRVFCR RP + E + C T
Sbjct: 27 AAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDEST 86
Query: 400 --VVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCI 457
+ DA ++G ++ F FD+VF P Q D+F SPL+ S LDGYN+CI
Sbjct: 87 VELQSIDAQAKSKMG-------QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICI 139
Query: 458 FAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIR 516
FAYGQTG+GKT+TM+G +S GV RT++ LF+ I R+ + Y I + LE+YNE +
Sbjct: 140 FAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLY 199
Query: 517 DLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHS 576
DLL+ ++ + ++++ +V I E V +++ T RA S NE S
Sbjct: 200 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 259
Query: 577 SRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSAL 636
SRSH + + + ++ E + + LVDLAGSE + R+ E +NI RSLS L
Sbjct: 260 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSEL 315
Query: 637 GDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQ 696
+VI +L K +HIPYRNSKLTHLL SLGG+SKTLMF+ +SP + E++ SL FA
Sbjct: 316 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 375
Query: 697 VRGVELGPARK 707
V ++ A++
Sbjct: 376 VNSCKMTKAKR 386
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 210/371 (56%), Gaps = 22/371 (5%)
Query: 348 VAQCEDFKMKYSEEQAKRKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCAT-------- 399
A+ E K + + +RKEL+N + R NIRVFCR RP + E + C T
Sbjct: 30 AAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDEST 89
Query: 400 --VVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCI 457
+ DA ++G ++ F FD+VF P Q D+F SPL+ S LDGYN+CI
Sbjct: 90 VELQSIDAQAKSKMG-------QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICI 142
Query: 458 FAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIR 516
FAYGQTG+GKT+TM+G +S GV RT++ LF+ I R+ + Y I + LE+YNE +
Sbjct: 143 FAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLY 202
Query: 517 DLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHS 576
DLL+ ++ + ++++ +V I E V +++ T RA S NE S
Sbjct: 203 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 262
Query: 577 SRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSAL 636
SRSH + + + ++ E + + LVDLAGSE + R+ E +NINRSLS L
Sbjct: 263 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSEL 318
Query: 637 GDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQ 696
+VI +L K +HIPYRNSKLTHLL SLGG+SKTLMF+ +SP + E++ SL FA
Sbjct: 319 TNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAAS 378
Query: 697 VRGVELGPARK 707
V ++ A++
Sbjct: 379 VNSCKMTKAKR 389
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 251 bits (642), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 208/365 (56%), Gaps = 22/365 (6%)
Query: 349 AQCEDFKMKYSEEQAKRKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCAT--------- 399
A+ E K + + +RKEL+N + RGNIRVFCR RP + E + C T
Sbjct: 28 AELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTV 87
Query: 400 -VVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIF 458
+ DA ++G ++ F FD+VF P Q D+F SPL+ S LDGYN+CIF
Sbjct: 88 ELQSIDAQAKSKMG-------QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIF 140
Query: 459 AYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIRD 517
AYGQ+G+GKT+TM+G +S GV RT++ LF+ I R+ + Y I + LE+YNE + D
Sbjct: 141 AYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYD 200
Query: 518 LLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSS 577
LL+ ++ + ++++ +V I E V +++ T RA S NE SS
Sbjct: 201 LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSS 260
Query: 578 RSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALG 637
RSH + + + ++ E + + LVDLAGSE + R+ E +NINRSLS L
Sbjct: 261 RSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELT 316
Query: 638 DVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQV 697
+VI +L K +HIPYRNSKLTHLL SLGG+SKTLMF+ +SP + E++ SL FA V
Sbjct: 317 NVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 376
Query: 698 RGVEL 702
++
Sbjct: 377 NSCKM 381
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/369 (41%), Positives = 222/369 (60%), Gaps = 20/369 (5%)
Query: 351 CEDFKMKYSEEQAKRKELYNQIQQTRGNIRVFCRCRP-LNKVEISAGCATVVDFDAAKDG 409
E+ K +E++ R+ L+N++Q+ RGNIRV+CR RP L + + V FD +G
Sbjct: 2 AEEIKKILVKEESLRRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDD-DNG 60
Query: 410 ELGVLT--GSSTRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGK 467
+ G+ G+S FKFD++F + ++F + L+ S LDGYNVCIFAYGQTG+GK
Sbjct: 61 DQGMTINRGNSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGK 120
Query: 468 TFTMEGTEQSRGVNYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK 526
T+TM G+ T+ +F I K + ++Y +S +E+YNE I DLL + S+
Sbjct: 121 TYTM--LNPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQ 178
Query: 527 ---------KLEIKQSSE-GSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHS 576
K EI+ E + ++ I ++S VL+ + R+ S NEHS
Sbjct: 179 ENNDRNADSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHS 238
Query: 577 SRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSAL 636
SRSH + I + KN +GE ++ L LVDLAGSERL + V G+RL+E Q+IN+SLS L
Sbjct: 239 SRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCL 298
Query: 637 GDVIYSLAT---KSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNF 693
GDVI++L + + HIP+RNSKLT+LLQ SL G SKTLMFV ISP+ L+ET++SL F
Sbjct: 299 GDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRF 358
Query: 694 ATQVRGVEL 702
A++V ++
Sbjct: 359 ASKVNNTKM 367
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 249 bits (636), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 208/361 (57%), Gaps = 47/361 (13%)
Query: 376 RGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGE---------------LGVLTGSST- 419
+GNIRVFCR RP+ E + ++ F + G G L+G+
Sbjct: 21 KGNIRVFCRVRPVLPGEPTPPPGLLL-FPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 420 --RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTE-- 475
R F FDRVF P GQ +VF + + LV S LDGY VCIFAYGQTG+GKTFTMEG
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 476 --QSRGVNYRTLEQLFEIAKERS-ETFTYNISVSVLEVYNEQIRDLLATSPTSK----KL 528
Q G+ R L LF +A+E S + +TY+ S +E+YNE +RDLLAT T K +
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATG-TRKGQGGEC 198
Query: 529 EIKQSSEGS--------HHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSH 580
EI+++ GS +VP E V+++ L RAV NE SSRSH
Sbjct: 199 EIRRAGPGSEELTVTNARYVPVSCEKEVDAL------LHLARQNRAVARTAQNERSSRSH 252
Query: 581 CMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQG----DRLKEAQNINRSLSAL 636
+ + + ++ G + L LVDLAGSERL G +RL+E Q IN SLS L
Sbjct: 253 SVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTL 312
Query: 637 GDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQ 696
G VI +L+ K +H+PYRNSKLT+LLQ+SLGG +K LMFV ISP E+++SE+L+SL FA++
Sbjct: 313 GLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
Query: 697 V 697
V
Sbjct: 373 V 373
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 243 bits (621), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 200/343 (58%), Gaps = 19/343 (5%)
Query: 377 GNIRVFCRCRP-LNKVEIS-AGCATVVDFD---AAKDGELGVLTGSSTRKTFKFDRVFTP 431
GNIRV+CR RP L +E S V +FD + E+ + ++ FKFD++F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 432 NDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE- 490
D VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 119
Query: 491 IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-------KLEIKQSSEGSHHVPGI 543
I K +++ + Y ++ +E+YNE I DLL + +K K EI+ E
Sbjct: 120 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 179
Query: 544 VEA-NVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKL 602
V + + S +L+ + R+ S NEHSSRSH + I + N +G + L
Sbjct: 180 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 239
Query: 603 WLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA---TKSNHIPYRNSKLTH 659
LVDLAGSER+ + V GDRL+E QNIN+SLS LGDVI++L + HIP+RNSKLT+
Sbjct: 240 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 299
Query: 660 LLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVEL 702
LLQ SL GDSKTLMFV ISPS ++ETL+SL FA++V L
Sbjct: 300 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 243 bits (620), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/344 (43%), Positives = 200/344 (58%), Gaps = 19/344 (5%)
Query: 376 RGNIRVFCRCRP-LNKVEIS-AGCATVVDFD---AAKDGELGVLTGSSTRKTFKFDRVFT 430
RGNIRV+CR RP L +E S V +FD + E+ + ++ FKFD++F
Sbjct: 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 61
Query: 431 PNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE 490
D VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFN 119
Query: 491 -IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-------KLEIKQSSEGSHHVPG 542
I K +++ + Y ++ +E+YNE I DLL + +K K EI+ E
Sbjct: 120 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 179
Query: 543 IVEA-NVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSK 601
V + + S +L+ + R+ S NEHSSRSH + I + N +G +
Sbjct: 180 NVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGT 239
Query: 602 LWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA---TKSNHIPYRNSKLT 658
L LVDLAGS R+ + V GDRL+E QNIN+SLS LGDVI++L + HIP+RNSKLT
Sbjct: 240 LNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 299
Query: 659 HLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVEL 702
+LLQ SL GDSKTLMFV ISPS ++ETL+SL FA++V L
Sbjct: 300 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 243 bits (620), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/344 (43%), Positives = 200/344 (58%), Gaps = 19/344 (5%)
Query: 376 RGNIRVFCRCRP-LNKVEIS-AGCATVVDFD---AAKDGELGVLTGSSTRKTFKFDRVFT 430
RGNIRV+CR RP L +E S V +FD + E+ + ++ FKFD++F
Sbjct: 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 61
Query: 431 PNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE 490
D VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFN 119
Query: 491 -IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-------KLEIKQSSEGSHHVPG 542
I K +++ + Y ++ +E+YNE I DLL + +K K EI+ E
Sbjct: 120 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 179
Query: 543 IVEA-NVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSK 601
V + + S +L+ + R+ S NEHSSRSH + I + N +G +
Sbjct: 180 NVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGT 239
Query: 602 LWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA---TKSNHIPYRNSKLT 658
L LVDLAGSER+ + V GDRL+E QNI +SLS LGDVI++L + HIP+RNSKLT
Sbjct: 240 LNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 299
Query: 659 HLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVEL 702
+LLQ SL GDSKTLMFV ISPS ++ETL+SL FA++V L
Sbjct: 300 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 243 bits (619), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/344 (43%), Positives = 200/344 (58%), Gaps = 19/344 (5%)
Query: 376 RGNIRVFCRCRP-LNKVEIS-AGCATVVDFD---AAKDGELGVLTGSSTRKTFKFDRVFT 430
RGNIRV+CR RP L +E S V +FD + E+ + ++ FKFD++F
Sbjct: 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 61
Query: 431 PNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE 490
D VDVF + LV S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFN 119
Query: 491 -IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-------KLEIKQSSEGSHHVPG 542
I K +++ + Y ++ +E+YNE I DLL + +K K EI+ E
Sbjct: 120 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 179
Query: 543 IVEA-NVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSK 601
V + + S +L+ + R+ S NEHSS SH + I + N +G +
Sbjct: 180 NVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGT 239
Query: 602 LWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA---TKSNHIPYRNSKLT 658
L LVDLAGSER+ + V GDRL+E QNIN+SLS LGDVI++L + HIP+RNSKLT
Sbjct: 240 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLT 299
Query: 659 HLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVEL 702
+LLQ SL GDSKTLMFV ISPS ++ETL+SL FA++V L
Sbjct: 300 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/347 (40%), Positives = 201/347 (57%), Gaps = 22/347 (6%)
Query: 376 RGNIRVFCRCRP--LNKVEISAGCATVVDFDAAKDGELGVLTGSSTR---KTFKFDRVFT 430
RGNIRV+CR RP LN+ + + F+ AK + + + R F+FD +F
Sbjct: 4 RGNIRVYCRVRPPLLNEPQ-DMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFE 62
Query: 431 PNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE 490
P+ ++F + LV S LDGYNVCIFAYGQTG+GKT+TM G+ TL +F+
Sbjct: 63 PSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM--LNAGDGMIPMTLSHIFK 120
Query: 491 -IAKERSETFTYNISVSVLEVYNEQIRDLLATSPT---------SKKLEIKQSSEG-SHH 539
A + + Y + +E+YNE I DLL + S+K +I+ E +
Sbjct: 121 WTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTY 180
Query: 540 VPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTK 599
+ + + S + +L+ S R+ + NE SSRSH + + + +NL +GE ++
Sbjct: 181 ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQ 240
Query: 600 SKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKS---NHIPYRNSK 656
KL LVDLAGSER+ + V G+RL+E QNIN+SLS LGDVIY+L T +IP+RNSK
Sbjct: 241 GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSK 300
Query: 657 LTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELG 703
LT+LLQ SL GDSKTLMFV I P +SETL+SL FA++V ++
Sbjct: 301 LTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 233 bits (594), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 195/327 (59%), Gaps = 13/327 (3%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVD 437
NI+V CR RPLN+ E++ G + F GE V+ S K + FDRVF + Q
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQ----GEDTVVIAS---KPYAFDRVFQSSTSQEQ 60
Query: 438 VFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGT---EQSRGVNYRTLEQLFEIAK 493
V+ D A +V VL+GYN IFAYGQT +GKT TMEG + G+ R ++ +F
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 494 ERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIRE 553
E ++I VS E+Y ++IRDLL S T+ L + + +V G E V S E
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 554 AWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERL 613
+ + G S R V N+NEHSSRSH + I V+ +N + + KL+LVDLAGSE++
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 614 TRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLM 673
++T +G L EA+NIN+SLSALG+VI +LA S ++PYR+SK+T +LQDSLGG+ +T +
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTI 298
Query: 674 FVQISPSEQDLSETLSSLNFATQVRGV 700
+ SPS + SET S+L F + + +
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 233 bits (593), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 196/328 (59%), Gaps = 13/328 (3%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVD 437
NI+V CR RPLN+ E++ G + F GE V+ S K + FDRVF + Q
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQ----GEDTVVIAS---KPYAFDRVFQSSTSQEQ 60
Query: 438 VFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGT---EQSRGVNYRTLEQLFEIAK 493
V+ D A +V VL+GYN IFAYGQT +GKT TMEG + G+ R ++ +F
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 494 ERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIRE 553
E ++I VS E+Y ++IRDLL S T+ L + + +V G E V S E
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 554 AWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERL 613
+ + G S R V N+NEHSSRSH + I V+ +N + + KL+LVDLAGSE++
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 614 TRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLM 673
++T +G L EA+NIN+SLSALG+VI +LA S ++PYR+SK+T +LQDSLGG+ +T +
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTI 298
Query: 674 FVQISPSEQDLSETLSSLNFATQVRGVE 701
+ SPS + SET S+L F + + ++
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 195/328 (59%), Gaps = 13/328 (3%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVD 437
NI+V CR RPLN+ E++ G V F GE V+ S K + FDRVF + Q
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQ----GEDTVMIAS---KPYAFDRVFQSSTSQEQ 60
Query: 438 VFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGT---EQSRGVNYRTLEQLFEIAK 493
V+ D A +V VL+GYN IFAYGQT +GK TMEG + G+ R ++ +F
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 494 ERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIRE 553
E ++I VS E+Y ++IRDLL S T+ L + + +V G E V S E
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 554 AWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERL 613
+ + G S R V N+NEHSSRSH + I V+ +N + + KL+LVDLAGSE++
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 614 TRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLM 673
++T +G L EA+NIN+SLSALG+VI +LA S ++PYR+SK+T +LQDSLGG+ +T +
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTI 298
Query: 674 FVQISPSEQDLSETLSSLNFATQVRGVE 701
+ SPS + SET S+L F + + ++
Sbjct: 299 VICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 209/344 (60%), Gaps = 20/344 (5%)
Query: 376 RGNIRVFCRCRPLNKVEISAGCAT---VVDFDAAKD------GELGV---LTGSSTRKTF 423
+GNIRVFCR R ++ S+ ++ ++ ++A +D EL + + + + F
Sbjct: 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRF 432
Query: 424 KFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYR 483
FD++F VF + S L+ LDG NVC+FAYGQTG+GKTFTM + + G+
Sbjct: 433 LFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMIPL 490
Query: 484 TLEQLF-EIAKERSETFTYNISVSVLEVYNEQIRDLL--ATSPTSKKLEIKQSS-EGSHH 539
+L+++F +I + + + ++Y + +E+YNE I DLL P +K EIK G
Sbjct: 491 SLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTK-YEIKHDDIAGKTT 549
Query: 540 VPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTK 599
V + ++ S +A +L + R+ + N+HSSRSH + I ++ N ++ E +
Sbjct: 550 VTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSY 609
Query: 600 SKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATK-SNHIPYRNSKLT 658
L L+DLAGSERL + +GDRLKE Q IN+SLS LGDVI+SL K +H+PYRNSKLT
Sbjct: 610 GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLT 669
Query: 659 HLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVEL 702
+LL+ SLGG+SKTLMFV ISP +DL+ET++SL FAT+V +
Sbjct: 670 YLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 229 bits (583), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 196/328 (59%), Gaps = 11/328 (3%)
Query: 379 IRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDV 438
I+V CR RPLN E AG VV F + + G K + FD+VF PN Q V
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG----KVYLFDKVFKPNASQEKV 68
Query: 439 FADAS-PLVISVLDGYNVCIFAYGQTGTGKTFTMEGT---EQSRGVNYRTLEQLFEIAKE 494
+ +A+ +V VL GYN IFAYGQT +GKT TMEG +G+ R + +F
Sbjct: 69 YNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYA 128
Query: 495 RSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREA 554
++I VS E+Y ++IRDLL S + L + + +V G E V+S +
Sbjct: 129 MEVNLEFHIKVSYYEIYMDKIRDLLDVSKVN--LSVHEDKNRVPYVKGATERFVSSPEDV 186
Query: 555 WNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLT 614
+ V++ G S R + N+NEHSSRSH + I V+ +NL + + KL+LVDLAGSE+++
Sbjct: 187 FEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVS 246
Query: 615 RTDVQGDRLKEAQNINRSLSALGDVIYSLATKS-NHIPYRNSKLTHLLQDSLGGDSKTLM 673
+T +G L EA+NIN+SLSALG+VI +LA + HIPYR+SKLT +LQ+SLGG+++T +
Sbjct: 247 KTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTI 306
Query: 674 FVQISPSEQDLSETLSSLNFATQVRGVE 701
+ SP+ + SET S+L+F + + V+
Sbjct: 307 VICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 229 bits (583), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V RCRP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 136
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 137 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 228 bits (582), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V RCRP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 136
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 137 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 228 bits (582), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V RCRP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 75
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 76 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 135
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 136 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 193
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 194 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 253
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 254 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 313
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 314 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V RCRP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 67
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 68 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 127
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 128 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 185
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 186 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 245
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 246 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 305
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 306 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V RCRP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGII 136
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 137 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V RCRP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGII 136
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 137 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V RCRP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 78
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 79 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 138
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 139 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 196
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 197 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 256
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 257 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 316
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 317 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V R RP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + +P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 77 KQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGII 136
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 137 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 200/345 (57%), Gaps = 25/345 (7%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPND 433
NI+V RCRP N E A ++V+ D + E+ V TG S+RKT+ FD VF +
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 61
Query: 434 GQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVN 481
Q+DV+ + P++ V+ GYN IFAYGQTGTGKTFTMEG G+
Sbjct: 62 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 121
Query: 482 YRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLL-ATSPTSKKLEIKQSSEGSHHV 540
RTL Q+FE + F+ + VS+LE+YNE++ DLL +S S++L++ V
Sbjct: 122 PRTLHQIFEKLTDNGTEFS--VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 179
Query: 541 --PGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE- 596
G+ E V++ E + +L+ G++ R + +N +SSRSH + + + K I GE
Sbjct: 180 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 239
Query: 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNS 655
KL LVDLAGSE + R+ R +EA NIN+SL LG VI +L ++ H+PYR S
Sbjct: 240 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 299
Query: 656 KLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
KLT +LQDSLGG ++T + ISP+ +L ETLS+L +A + + +
Sbjct: 300 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 212/387 (54%), Gaps = 63/387 (16%)
Query: 365 RKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTR---- 420
R+ LY Q ++V RCRPL++ E +AG ++ D +LG +T + R
Sbjct: 11 RENLY--FQGASEALKVVARCRPLSRKEEAAGHEQILTMDV----KLGQVTLRNPRAAPG 64
Query: 421 ---KTFKFDRVFTPNDGQVDVFADA-SPLVISVLDGYNVCIFAYGQTGTGKTFTMEGT-- 474
KTF FD V+ + Q D++ + PL+ SVL G+N +FAYGQTGTGKT+TM+GT
Sbjct: 65 ELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWV 124
Query: 475 -EQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQS 533
+ RGV E +F RS+ Y + S LE+Y E+IRDLL+ P K+LE+K++
Sbjct: 125 EPELRGVIPNAFEHIF-THISRSQNQQYLVRASYLEIYQEEIRDLLSKEP-GKRLELKEN 182
Query: 534 SEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI 593
E ++ + +++E +V+ G+ RAVGS ++NE SSRSH + I V
Sbjct: 183 PETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITV------ 236
Query: 594 SGECTK-----------SKLWLVDLAGSERLTRT--DVQG-------------------- 620
EC++ KL LVDLAGSER + + G
Sbjct: 237 --ECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGA 294
Query: 621 --DRLKEAQNINRSLSALGDVIYSLA-TKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQI 677
+R KEA IN SLSALG+VI +LA +S HIPYR+SKLT LLQDSLGG++KT+M +
Sbjct: 295 GGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATL 354
Query: 678 SPSEQDLSETLSSLNFATQVRGVELGP 704
P+ E+LS+L FA + + ++ P
Sbjct: 355 GPASHSYDESLSTLRFANRAKNIKNKP 381
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 220 bits (561), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 198/348 (56%), Gaps = 19/348 (5%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVD 437
NI+V+ R RPLN E A VVD ++ S K F FDR F P Q D
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 438 VFADA-SPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSR-----------GVNYRTL 485
V++ SPL+ VL+GYN +FAYGQTGTGKT TM G E + G+ R L
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 486 EQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-KLEIKQSSEGSHHVPGIV 544
LF+ + R Y + +S LE+YNE++ DLL+T T+K ++ + +GS + G+
Sbjct: 144 SHLFD--ELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLE 201
Query: 545 EANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-NLISGE--CTKSK 601
E V+S + + +L+ G R + +N SSRSH + I+V + N I GE K
Sbjct: 202 EIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGK 261
Query: 602 LWLVDLAGSERLTRT-DVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHL 660
L LVDLAGSE +++ + +G R++E NIN+SL LG VI +L ++ H+PYR SKLT L
Sbjct: 262 LNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRL 321
Query: 661 LQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGPARKQ 708
LQ+SLGG +KT + ISP +D+ ETLS+L +A + + ++ P Q
Sbjct: 322 LQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 219 bits (559), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 195/347 (56%), Gaps = 28/347 (8%)
Query: 379 IRVFCRCRPLNKVEISAGCATVVDFDAAK------DGELGVLTGSSTRKTFKFDRVFTPN 432
++V R RP+N+ E VVD DA K + L K F +D F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 433 D--------GQVDVFADASPLVI-SVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYR 483
D GQ VF ++ + DGYN CIFAYGQTG+GK++TM GT G+ R
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 484 TLEQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPG 542
LFE KE +E ++ + VS +E+YNE++RDLL + + L++++ S +V G
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDG 182
Query: 543 IVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCI-----MVRAKNLISGEC 597
+ + V S ++ +++ G+ +R V + N+NE SSRSH + I + K+ SGE
Sbjct: 183 LSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEK 242
Query: 598 TKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA------TKSNHIP 651
KL LVDLAGSER T+T GDRLKE NIN+SL+ LG VI +LA K+ +P
Sbjct: 243 V-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVP 301
Query: 652 YRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVR 698
YR+S LT LL+DSLGG+SKT M +SP+ + ETLS+L +A + +
Sbjct: 302 YRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 182/338 (53%), Gaps = 14/338 (4%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAK--------DGELGVLTGSSTRKTFKFDRVF 429
NI+V RCRPLN E ++ D A + E +TF FD V+
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 430 TPNDGQVDVF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQL 488
+F A PL+ +VL+G+N IFAYGQTG GKT+TM G ++ G + + L
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL 124
Query: 489 FEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANV 548
F+ S + + S LE+YNE+IRDL+ + KL +K+ +V G+ V
Sbjct: 125 FDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN---TKLPLKEDKTRGIYVDGLSMHRV 181
Query: 549 NSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGE--CTKSKLWLVD 606
+ E ++ G + R V + +N+ SSRSH + + + +I + KL LVD
Sbjct: 182 TTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVD 241
Query: 607 LAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLG 666
LAGSER ++T G+ L E IN SLSALG VI L + HIPYR+SKLT LLQDSLG
Sbjct: 242 LAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLG 301
Query: 667 GDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGP 704
G+SKTLM ISP+ + ET+S+L +A + + ++ P
Sbjct: 302 GNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKP 339
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 193/338 (57%), Gaps = 24/338 (7%)
Query: 379 IRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDV 438
+RV R RPL E+ G + + + LG +T R F F V + GQ V
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPG----LGRVTLGRDRH-FGFHVVLAEDAGQEAV 67
Query: 439 F-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGT------EQSRGVNYRTLEQLFEI 491
+ A PL+ + +G+N +FAYGQTG+GKT+TM E +G+ R + + F++
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 492 AKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSI 551
E ++ + VS LEVY E+ RDLL S+ +++++ G+ + G+ E +V +
Sbjct: 128 IDE-NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGL 186
Query: 552 REAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMV--------RAKNLISGECTKSKLW 603
E ++L+ G++AR G+ ++N SSRSH + + + R G+ SK
Sbjct: 187 DEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFH 246
Query: 604 LVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT---KSNHIPYRNSKLTHL 660
VDLAGSER+ +T G+RLKE+ IN SL ALG+VI +L + +HIPYR+SK+T +
Sbjct: 247 FVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRI 306
Query: 661 LQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVR 698
L+DSLGG++KT+M +SPS D ETL++LN+A++ +
Sbjct: 307 LKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 184/330 (55%), Gaps = 42/330 (12%)
Query: 421 KTFKFDRVFTPNDGQVDVFADASPLVISV--------LDGYNVCIFAYGQTGTGKTFTME 472
K+F FD+ F ++ + + +A + S+ +GY+ CIFAYGQTG+GK++TM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 473 GTEQSRGVNYRTLEQLFE-IAKERSET--FTYNISVSVLEVYNEQIRDLLATSPTSKK-- 527
GT G+ RT E LF+ IA + ET +YN+ VS EVYNE +RDLLA +K
Sbjct: 156 GTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPY 215
Query: 528 -LEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIM 586
L++++S +V + E V + E ++ G +R V S +N+ SSRSH + IM
Sbjct: 216 YLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIM 275
Query: 587 VRA--KNLISGECTK--SKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYS 642
++ +L + + T+ S++ LVDLAGSER T+ G RL+E NIN+SL+ LG VI +
Sbjct: 276 LKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAA 335
Query: 643 LATKSNH----------------------IPYRNSKLTHLLQDSLGGDSKTLMFVQISPS 680
LA + +PYR+S LT LL+DSLGG+SKT M ISP+
Sbjct: 336 LADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT 395
Query: 681 EQDLSETLSSLNFATQVRGVELGPARKQID 710
+ D ETLS+L +A Q + + Q+D
Sbjct: 396 DYD--ETLSTLRYADQAKRIRTRAVVNQVD 423
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 185/349 (53%), Gaps = 30/349 (8%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVD--------FDAAKDGELGVLTGSSTRK-------- 421
+++V R RP N E +AG VV FD K E+ G T
Sbjct: 11 HMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDP-KQEEVSFFHGKKTTNQNVIKKQN 69
Query: 422 ---TFKFDRVFTPNDGQVDVFADAS-PLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQS 477
F FD VF Q +VF + P++ S L+GYN + AYG TG GKT TM G+
Sbjct: 70 KDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADE 129
Query: 478 RGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGS 537
GV Y T+ L++ E E + +VS LEVYNEQIRDLL S L +++ ++
Sbjct: 130 PGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLV---NSGPLAVREDTQKG 186
Query: 538 HHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKN---LIS 594
V G+ S E ++L G+ R ++N SSRSH + I +R ++ I+
Sbjct: 187 VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASIN 246
Query: 595 GECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT---KSNHIP 651
+K+ L+DLAGSER + + +G R E NINRSL ALG+VI +LA K+ HIP
Sbjct: 247 QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIP 306
Query: 652 YRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
YRNSKLT LL+DSLGG+ +T+M +SPS +T ++L +A + + +
Sbjct: 307 YRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 191/338 (56%), Gaps = 24/338 (7%)
Query: 379 IRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDV 438
+RV R RPL E+ G + + + LG +T R F F V + GQ V
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPG----LGRVTLGRDRH-FGFHVVLAEDAGQEAV 67
Query: 439 F-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGT------EQSRGVNYRTLEQLFEI 491
+ A PL+ + +G+N +FAYGQTG+GKT+TM E +G+ R + + F++
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 492 AKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSI 551
E ++ + VS LEVY E+ RDLL S+ +++++ G+ + G+ E +V +
Sbjct: 128 IDE-NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGL 186
Query: 552 REAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMV--------RAKNLISGECTKSKLW 603
E ++L+ G++AR G+ ++N SSRSH + + + R G+ SK
Sbjct: 187 DEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFH 246
Query: 604 LVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT---KSNHIPYRNSKLTHL 660
VDLAGSER+ +T G+ KE+ IN SL ALG+VI +L + ++IPYR+SK+T +
Sbjct: 247 FVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRI 306
Query: 661 LQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVR 698
L+DSLGG++KT+M +SPS D ETL++LN+A++ +
Sbjct: 307 LKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 190/347 (54%), Gaps = 15/347 (4%)
Query: 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQV 436
G + V R RPLN E S G V + + V+ K+F FDRVF N+
Sbjct: 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNN----VIYQVDGSKSFNFDRVFHGNETTK 59
Query: 437 DVFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKER 495
+V+ + A+P++ S + GYN IFAYGQT +GKT+TM G+E GV R + +F+ K+
Sbjct: 60 NVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF 119
Query: 496 SETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAW 555
+ + + VS +E+YNE I DLL + K L I++ + +V + E V + A
Sbjct: 120 PDR-EFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMAL 178
Query: 556 NVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK-----NLISGECTKSKLWLVDLAGS 610
+ G +R G +N+ SSRSH + +++ ++ + G S L LVDLAGS
Sbjct: 179 KWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGS 238
Query: 611 ERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATK--SNHIPYRNSKLTHLLQDSLGGD 668
ER +T G RLKE NINRSL LG VI L+ I YR+SKLT +LQ+SLGG+
Sbjct: 239 ERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGN 298
Query: 669 SKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGPARKQIDTSELQ 715
+KT + I+P D ETL++L FA+ + ++ P ++ T EL+
Sbjct: 299 AKTRIICTITPVSFD--ETLTALQFASTAKYMKNTPYVNEVSTDELE 343
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 198/360 (55%), Gaps = 35/360 (9%)
Query: 372 IQQTRGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVF-- 429
I +++V R RP N E+S ++ + + T K+F FD +
Sbjct: 15 INMPGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWS 74
Query: 430 --TPND----GQVDVFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQ--SRGV 480
+P D Q V+ D ++ +GYNVCIFAYGQTG GK++TM G ++ +G+
Sbjct: 75 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 134
Query: 481 NYRTLEQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-KLEIKQSSEGSH 538
+ E LF I ++ +Y++ VS +E+Y E++RDLL +P +K L +++
Sbjct: 135 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGP 192
Query: 539 HVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK------NL 592
+V + + V S + +++ +G+ AR V + N+NE SSRSH + I+ K N+
Sbjct: 193 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNI 252
Query: 593 ISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA-------- 644
+ + SK+ LVDLAGSER T +G RLKE NIN+SL+ LG VI +LA
Sbjct: 253 TTEKV--SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 310
Query: 645 ----TKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
K++ IPYR+S LT LL+++LGG+S+T M +SP++ + ETLS+L +A + + +
Sbjct: 311 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 197/355 (55%), Gaps = 35/355 (9%)
Query: 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVF----TPN 432
+++V R RP N E+S ++ + + T K+F FD + +P
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 433 D----GQVDVFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQ--SRGVNYRTL 485
D Q V+ D ++ +GYNVCIFAYGQTG GK++TM G ++ +G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 486 EQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-KLEIKQSSEGSHHVPGI 543
E LF I ++ +Y++ VS +E+Y E++RDLL +P +K L +++ +V +
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVEDL 181
Query: 544 VEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK------NLISGEC 597
+ V S + +++ +G+ AR V + N+NE SSRSH + I+ K N+ + +
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV 241
Query: 598 TKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA------------T 645
SK+ LVDLAGSER T +G RLKE NIN+SL+ LG VI +LA
Sbjct: 242 --SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 646 KSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
K++ IPYR+S LT LL+++LGG+S+T M +SP++ + ETLS+L +A + + +
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 197/355 (55%), Gaps = 35/355 (9%)
Query: 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVF----TPN 432
+++V R RP N E+S ++ + + T K+F FD + +P
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 433 D----GQVDVFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQ--SRGVNYRTL 485
D Q V+ D ++ +GYNVCIFAYGQTG GK++TM G ++ +G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 486 EQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-KLEIKQSSEGSHHVPGI 543
E LF I ++ +Y++ VS +E+Y E++RDLL +P +K L +++ +V +
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVEDL 181
Query: 544 VEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK------NLISGEC 597
+ V S + +++ +G+ AR V + N+NE SSRSH + I+ K N+ + +
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV 241
Query: 598 TKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA------------T 645
SK+ LVDLAGSER T +G RLKE NIN+SL+ LG VI +LA
Sbjct: 242 --SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 646 KSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
K++ IPYR+S LT LL+++LGG+S+T M +SP++ + ETLS+L +A + + +
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 188/342 (54%), Gaps = 20/342 (5%)
Query: 375 TRGNIRVFCRCRPLNKVE---ISAGC-ATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFT 430
TR + F R +P + I G +D KD GV+ T +FK D V
Sbjct: 22 TRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL- 80
Query: 431 PNDGQVDVFAD--ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQS---RGVNYRTL 485
+D D+ + A +V LDGYN I YGQTG GKT+TM G ++ RG+ R L
Sbjct: 81 -HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRAL 139
Query: 486 EQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLAT----SPTSKKLEIKQSSEGSHHVP 541
+Q+F + +ER T + VS LE+YNE + DLL+T P+ + I ++ +G +
Sbjct: 140 QQVFRMIEERP-THAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVF-IK 197
Query: 542 GIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRA--KNLISGECTK 599
G+ + +A+++L G + R + S+ +N++SSRSHC+ I + A + L +
Sbjct: 198 GLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYIT 257
Query: 600 SKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA-TKSNHIPYRNSKLT 658
SK+ LVDLAGSERL ++ +G LKEA IN+SLS L I +L K +HIP+R KLT
Sbjct: 258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLT 317
Query: 659 HLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
H L+DSLGG+ ++ I L ETLSSL FA++++ V
Sbjct: 318 HALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 196/355 (55%), Gaps = 35/355 (9%)
Query: 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVF----TPN 432
+++V R RP N E+S ++ + + T K+F FD + +P
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 433 D----GQVDVFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQ--SRGVNYRTL 485
D Q V+ D ++ +GYNVCIFAYGQTG GK++TM G ++ +G+ +
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLC 123
Query: 486 EQLFE-IAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSK-KLEIKQSSEGSHHVPGI 543
E LF I ++ +Y++ VS +E+Y E++RDLL +P +K L +++ +V +
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGNLRVREHPLLGPYVEDL 181
Query: 544 VEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK------NLISGEC 597
+ V S + +++ +G+ R V + N+NE SSRSH + I+ K N+ + +
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV 241
Query: 598 TKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA------------T 645
SK+ LVDLAGSER T +G RLKE NIN+SL+ LG VI +LA
Sbjct: 242 --SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 646 KSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
K++ IPYR+S LT LL+++LGG+S+T M +SP++ + ETLS+L +A + + +
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 186/343 (54%), Gaps = 13/343 (3%)
Query: 365 RKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFK 424
R+ LY Q R +RV R RP V+ +AG + L + + ++T K
Sbjct: 11 RENLYFQGPPAR--VRVAVRLRPF--VDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK 66
Query: 425 --FDRVFTPNDGQVDVFADA-SPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVN 481
FD + Q D++A + P++ +L+G N + AYG TG GKT TM G+ + GV
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVI 126
Query: 482 YRTLEQLFEIAKERS---ETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSH 538
R L L ++ +E + ++++S LE+Y E++ DLL P S L I++ G+
Sbjct: 127 PRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL--DPASGDLVIREDCRGNI 184
Query: 539 HVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMV-RAKNLISGEC 597
+PG+ + ++S + S R VG+ +N+ SSRSH +L + V + + L
Sbjct: 185 LIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQ 244
Query: 598 TKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKL 657
+ KL+L+DLAGSE RT +G RLKE+ IN SL LG V+ +L +PYR+SKL
Sbjct: 245 REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKL 304
Query: 658 THLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGV 700
T LLQDSLGG + +++ I+P + +T+S+LNFA + + V
Sbjct: 305 TRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 133/240 (55%), Gaps = 12/240 (5%)
Query: 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVD 437
+I+V CR RPLN+ EI G + F GE V+ G K + FDRV PN Q
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFK----GEETVVIGQG--KPYVFDRVLPPNTTQEQ 60
Query: 438 VF-ADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGT---EQSRGVNYRTLEQLFEIAK 493
V+ A A +V VL+GYN IFAYGQT +GKT TMEG Q G+ R +F+
Sbjct: 61 VYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIY 120
Query: 494 ERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIRE 553
E ++I VS E+Y ++IRDLL S T+ L + + +V G E V+S E
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN--LAVHEDKNRVPYVKGCTERFVSSPEE 178
Query: 554 AWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERL 613
+V+ G + R V N+NEHSSRSH + I ++ +N+ + + KL+LVDLAGSE++
Sbjct: 179 VMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKV 238
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 158/320 (49%), Gaps = 41/320 (12%)
Query: 399 TVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVF-ADASPLVISVLDGYNVCI 457
+VV F DG+ ++ + F FD F Q +++ A PLV +L+G+
Sbjct: 43 SVVQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTA 98
Query: 458 FAYGQTGTGKTFTMEGTEQSR------GVNYRTLEQLFEIAKERSETFTYNISV--SVLE 509
AYGQTGTGK+++M T G+ R L +FE R E I V S +E
Sbjct: 99 LAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIE 158
Query: 510 VYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVE-------ANVNSIREAWNVLQTGS 562
+YNE+ DLL ++P H+P + ++S + ++L+ G+
Sbjct: 159 IYNEKPFDLLGSTP---------------HMPMVAARCQRCTCLPLHSQADLHHILELGT 203
Query: 563 SARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDR 622
R V N+N +SSRSH ++ I V++K S++ +VDLAGSE + RT +G
Sbjct: 204 RNRRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRRTGHEGVA 257
Query: 623 LKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQ 682
+E NIN L ++ V+ S+A IPYR+S LT +LQ SL S ISP +
Sbjct: 258 RQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQC 317
Query: 683 DLSETLSSLNFATQVRGVEL 702
DLSETLS+L F T + L
Sbjct: 318 DLSETLSTLRFGTSAKAAAL 337
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 160/320 (50%), Gaps = 41/320 (12%)
Query: 399 TVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVF-ADASPLVISVLDGYNVCI 457
+VV F DG+ ++ + F FD F Q +++ A PLV +L+G+
Sbjct: 43 SVVQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTA 98
Query: 458 FAYGQTGTGKTFTMEGTE------QSRGVNYRTLEQLFEIAKERSETFTYNISV--SVLE 509
AYGQTGTGK+++M T + G+ R L +FE R E I V S +E
Sbjct: 99 LAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIE 158
Query: 510 VYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVE-------ANVNSIREAWNVLQTGS 562
+YNE+ DLL ++P H+P + ++S + ++L+ G+
Sbjct: 159 IYNEKPFDLLGSTP---------------HMPMVAARCQRCTCLPLHSQADLHHILELGT 203
Query: 563 SARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDR 622
R V N+N +SSRSH ++ I V++K S++ +VDLAGSE + RT +G
Sbjct: 204 RNRRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRRTGHEGVA 257
Query: 623 LKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQ 682
+E NIN L ++ V+ S+A IPYR+S LT +LQ SL S ISP +
Sbjct: 258 RQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQC 317
Query: 683 DLSETLSSLNFATQVRGVEL 702
DLSETLS+L F T + + L
Sbjct: 318 DLSETLSTLRFGTSAKKLRL 337
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 163/338 (48%), Gaps = 28/338 (8%)
Query: 379 IRVFCRCRPLNKVEISAGCATVVDFDA-----AKDGELGV-LTGSSTRKTFKFDRVF--T 430
I V R RPLNK E++ V+ + + +L V LT + F FD F T
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 132
Query: 431 PNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG------TEQSRGVNYRT 484
++ V F A PLV ++ +G FAYGQTG+GKT TM G S+G+
Sbjct: 133 ASNEVVYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 191
Query: 485 LEQLFEIAKE-RSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGI 543
+F + + R + V+ E+YN ++ DLL KL + + S V G+
Sbjct: 192 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA---KLRVLEDSRQQVQVVGL 248
Query: 544 VEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLW 603
E V + ++ GS+ R G N +SSRSH I++R K + G K
Sbjct: 249 QEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFS 303
Query: 604 LVDLAGSERLTRTDVQGDRLK--EAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLL 661
LVDLAG+ER T DR E IN+SL AL + I +L H P+R SKLT +L
Sbjct: 304 LVDLAGNERGADTS-SADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVL 362
Query: 662 QDS-LGGDSKTLMFVQISPSEQDLSETLSSLNFATQVR 698
+DS +G +S+T M ISP TL++L +A +V+
Sbjct: 363 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 168/344 (48%), Gaps = 30/344 (8%)
Query: 379 IRVFCRCRPLNKVEISAGCATVVDFDA-----AKDGELGV-LTGSSTRKTFKFDRVF--T 430
I V R RPLNK E++ V+ + + +L V LT + F FD F T
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 112
Query: 431 PNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG------TEQSRGVNYRT 484
++ V F A PLV ++ +G FAYGQTG+GKT TM G S+G+
Sbjct: 113 ASNEVVYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMA 171
Query: 485 LEQLFEIAKERS-ETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGI 543
+F + + + V+ E+YN ++ DLL KL + + + V G+
Sbjct: 172 SRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA---KLRVLEDGKQQVQVVGL 228
Query: 544 VEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLW 603
E VNS + ++ GS+ R G N +SSRSH I++RAK + G K
Sbjct: 229 QEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHG-----KFS 283
Query: 604 LVDLAGSERLTRTDVQGDRLK--EAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLL 661
LVDLAG+ER T DR E IN+SL AL + I +L H P+R SKLT +L
Sbjct: 284 LVDLAGNERGADTS-SADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVL 342
Query: 662 QDS-LGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGP 704
+DS +G +S+T M ISP TL++L +A +V+ EL P
Sbjct: 343 RDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK--ELSP 384
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 166/339 (48%), Gaps = 30/339 (8%)
Query: 379 IRVFCRCRPLNKVEISAGCATVV-----DFDAAKDGELGV-LTGSSTRKTFKFDRVF--- 429
I V R RPLNK E V+ D + + V LT +TF+FD F
Sbjct: 91 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDS 150
Query: 430 TPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG------TEQSRGVNYR 483
PN+ V F A PLV ++ + FAYGQTG+GKT TM G + S+G+
Sbjct: 151 APNE-MVYRFT-ARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYAL 208
Query: 484 TLEQLFEIAKERS-ETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPG 542
+F + K+ + + + + E+Y+ ++ DLL KL + + + V G
Sbjct: 209 AARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRK---TKLRVLEDGKQQVQVVG 265
Query: 543 IVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKL 602
+ E V + + ++ G+S R G + N HSSRSH + I++R K + G K
Sbjct: 266 LQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KF 320
Query: 603 WLVDLAGSERLTRTDVQGDRLK--EAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHL 660
L+DLAG+ER T DR E IN+SL AL + I +L H P+R SKLT +
Sbjct: 321 SLIDLAGNERGADTS-SADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQV 379
Query: 661 LQDS-LGGDSKTLMFVQISPSEQDLSETLSSLNFATQVR 698
L+DS +G +S+T M ISP TL++L +A +V+
Sbjct: 380 LRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 163/338 (48%), Gaps = 28/338 (8%)
Query: 379 IRVFCRCRPLNKVEISAGCATVVDFDA-----AKDGELGV-LTGSSTRKTFKFDRVF--T 430
I V R RPLNK E++ V+ + + +L V LT + F FD F T
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 431 PNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG------TEQSRGVNYRT 484
++ V F A PLV ++ +G FAYGQTG+GKT TM G S+G+
Sbjct: 61 ASNEVVYRFT-ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 119
Query: 485 LEQLFEIAKE-RSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGI 543
+F + + R + V+ E+YN ++ DLL KL + + S V G+
Sbjct: 120 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA---KLRVLEDSRQQVQVVGL 176
Query: 544 VEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLW 603
E V + ++ GS+ R G N +SSRSH I++R K + G K
Sbjct: 177 QEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFS 231
Query: 604 LVDLAGSERLTRTDVQGDRLK--EAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLL 661
LVDLAG+ER T DR E IN+SL AL + I +L H P+R SKLT +L
Sbjct: 232 LVDLAGNERGADTS-SADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVL 290
Query: 662 QDS-LGGDSKTLMFVQISPSEQDLSETLSSLNFATQVR 698
+DS +G +S+T M ISP TL++L +A +V+
Sbjct: 291 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 167/341 (48%), Gaps = 34/341 (9%)
Query: 379 IRVFCRCRPLNKVE----------ISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRV 428
I+V R RPL+++E + C +D K +T R F D+V
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVD----MTKYIERHEFIVDKV 57
Query: 429 FTPNDGQVDVFA----DASPLVISVLDGYNVC-IFAYGQTGTGKTFTMEGTE-----QSR 478
F D VD F PL+I + + VC FAYGQTG+GKT+TM G++ +
Sbjct: 58 F---DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP 114
Query: 479 GVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSH 538
G+ +F + T I +S E+Y ++ DLL LE + +
Sbjct: 115 GIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE---NGKKEV 171
Query: 539 HVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECT 598
V + V + E + G R +G N+ N+ SSRSH +L I ++ I+ +
Sbjct: 172 VVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNTS 228
Query: 599 KSKLWLVDLAGSERLTRTDVQGDRLK-EAQNINRSLSALGDVIYSLATKSNHIPYRNSKL 657
K+ +DLAGSER T Q + + + NINRSL AL + I ++ + NHIP+R+S+L
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSEL 288
Query: 658 THLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVR 698
T +L+D G SK++M ISP+ +TL++L ++++V+
Sbjct: 289 TKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 58/78 (74%), Gaps = 3/78 (3%)
Query: 626 AQNINRSLSALGDVIYSLA--TKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQD 683
A+NIN+SLSALG+VI +LA TK+ H+PYR+SK+T +LQDSL G+ +T + + SPS +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 684 LSETLSSLNFATQVRGVE 701
+ET S+L F + + ++
Sbjct: 60 EAETKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 630 NRSLSALGDVIYSLA--TKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSET 687
N+SLSALG+VI +LA TK+ H+PYR+SK+T +LQDSLGG+ +T + + SPS + +ET
Sbjct: 1 NKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAET 59
Query: 688 LSSLNFATQVRGVE 701
S+L F + + ++
Sbjct: 60 KSTLMFGQRAKTIK 73
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 84 IYQSARFGNFCYRFNDIP---PGHYYVDLHFAEIINTNGPKGMRVFNVFVQEEKVVSDFD 140
+YQ+ R+ + + DIP G Y + L FAE+ + +VF+V V VV D D
Sbjct: 56 LYQTERYNEDSFGY-DIPIKEEGEYVLVLKFAEVYFAQSQQ--KVFDVRVNGHTVVKDLD 112
Query: 141 IFSIVGANK------PLQLVDIGVSVKEE-----GTVVVRF-EGISGSPAVSGICIRRAS 188
IF VG + P+ + +SV+ E G + V F +G +P V + I + +
Sbjct: 113 IFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIMKGT 172
>pdb|3LHL|A Chain A, Crystal Structure Of A Putative Agmatinase From
Clostridium Difficile
Length = 287
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 417 SSTRKTFKF---DRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473
S T++ FKF ++ G +D F + +++ L+G N+ + F G
Sbjct: 160 SGTKEEFKFATEEKHTYXEIGGIDTFEN----IVNXLNGKNIYLTIDLDVLDASVFPGTG 215
Query: 474 TEQSRGVNYRTLEQLFEIAK 493
T + GVNYR +++F+I K
Sbjct: 216 TPEPGGVNYREFQEIFKIIK 235
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 84 IYQSARFGNFCYRFNDIP---PGHYYVDLHFAEIINTNGPKGMRVFNVFVQEEKVVSDFD 140
+YQ+ R+ + + DIP G Y + L FAE+ + +VF+V V VV D D
Sbjct: 60 LYQTERYNEDSFGY-DIPIKEEGEYVLVLKFAEVYFAQSQQ--KVFDVRVNGHTVVKDLD 116
Query: 141 IFSIVGANK------PLQLVDIGVSVKEE-----GTVVVRF-EGISGSPAVSGICIRRAS 188
IF VG + P+ + +SV+ E G + V F +G +P V + I + +
Sbjct: 117 IFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIMKGT 176
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 29/152 (19%)
Query: 121 KGMRVFNVFVQEEKVVSDFDIFSIVGANKPLQLVDIGVSVKEEGTVV--------VRFEG 172
+G++V + E VVS+ DIF NK + ++D +K V + G
Sbjct: 307 EGLQVLTL----EDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLG 362
Query: 173 ISGSPAVSGICIRRASKVLSVPQTSHEFL-----KCNNCAAEIEVPS------------A 215
+ P V I I+ + P+T+ + + N PS A
Sbjct: 363 LETHPGVKRITIKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIA 422
Query: 216 QKKLMRIKATEKYEKKIEELNKQFQLKTNECH 247
Q +L K++ KYEKK+ L K K H
Sbjct: 423 QLELWNEKSSGKYEKKVYVLPKHLDEKVAALH 454
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 212 VPSAQKKLMRIKA-----------TEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQL 260
VP AQ+ L R++A T++ +K + E K+ + + +E E + SLTAA +
Sbjct: 25 VPGAQEALKRLRATSVXVRFVTNTTKETKKDLLERLKKLEFEISE-DEIFTSLTAARNLI 83
Query: 261 EKVRME----LDNKAFQTLTLDQTVEKQA 285
E+ ++ LD++A T QT + A
Sbjct: 84 EQKQVRPXLLLDDRALPEFTGVQTQDPNA 112
>pdb|3CX6|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
pdb|3CX7|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 203
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 584 CIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVI 640
+M+ + I+ +K L L L G L D GD L+E Q + L+ALGD++
Sbjct: 119 AVMLEIQEQINDYRSKRTLGLGSLYGENDLLGLD--GDPLRERQMAEKQLAALGDIL 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,979,167
Number of Sequences: 62578
Number of extensions: 1126865
Number of successful extensions: 3019
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2584
Number of HSP's gapped (non-prelim): 225
length of query: 1032
length of database: 14,973,337
effective HSP length: 109
effective length of query: 923
effective length of database: 8,152,335
effective search space: 7524605205
effective search space used: 7524605205
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)