Query 001679
Match_columns 1032
No_of_seqs 684 out of 3337
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:44:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 2.5E-94 5.5E-99 863.7 42.0 485 223-725 175-665 (670)
2 KOG0243 Kinesin-like protein [ 100.0 1.1E-90 2.3E-95 833.8 48.7 428 377-812 49-513 (1041)
3 KOG0240 Kinesin (SMY1 subfamil 100.0 9.5E-84 2.1E-88 727.3 43.2 330 375-708 5-339 (607)
4 KOG4280 Kinesin-like protein [ 100.0 3.9E-86 8.5E-91 767.6 24.4 352 376-729 4-366 (574)
5 KOG0245 Kinesin-like protein [ 100.0 3.5E-83 7.5E-88 753.0 25.9 349 377-728 4-377 (1221)
6 PLN03188 kinesin-12 family pro 100.0 9.3E-80 2E-84 744.6 35.1 339 364-714 81-448 (1320)
7 cd01370 KISc_KIP3_like Kinesin 100.0 2.6E-79 5.6E-84 694.2 33.0 318 378-700 1-338 (338)
8 cd01373 KISc_KLP2_like Kinesin 100.0 3E-78 6.6E-83 685.2 34.3 318 377-700 1-337 (337)
9 cd01368 KISc_KIF23_like Kinesi 100.0 1.1E-76 2.4E-81 674.1 34.1 314 377-698 1-345 (345)
10 KOG0242 Kinesin-like protein [ 100.0 3.5E-77 7.5E-82 718.6 29.6 328 377-710 6-341 (675)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 7E-76 1.5E-80 671.0 35.5 327 377-706 1-355 (356)
12 KOG0241 Kinesin-like protein [ 100.0 4.7E-76 1E-80 678.4 31.7 367 377-747 4-400 (1714)
13 cd01367 KISc_KIF2_like Kinesin 100.0 6.6E-75 1.4E-79 654.3 32.5 312 377-698 1-322 (322)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.4E-74 9.6E-79 655.6 34.6 329 377-708 2-351 (352)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 7.2E-74 1.6E-78 647.3 34.7 319 377-700 2-325 (325)
16 cd01366 KISc_C_terminal Kinesi 100.0 1.1E-73 2.4E-78 646.9 35.8 327 376-703 1-329 (329)
17 KOG0247 Kinesin-like protein [ 100.0 4.4E-74 9.5E-79 662.2 32.7 333 374-706 28-442 (809)
18 cd01371 KISc_KIF3 Kinesin moto 100.0 1.1E-73 2.3E-78 647.6 34.3 321 377-700 1-333 (333)
19 cd01376 KISc_KID_like Kinesin 100.0 1.6E-73 3.4E-78 642.5 33.9 313 378-698 1-319 (319)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 7.4E-73 1.6E-77 643.2 33.7 319 378-701 2-341 (341)
21 cd01374 KISc_CENP_E Kinesin mo 100.0 8.1E-73 1.7E-77 637.6 33.4 315 378-700 1-321 (321)
22 cd01375 KISc_KIF9_like Kinesin 100.0 3.7E-72 8E-77 635.0 32.2 319 378-698 1-334 (334)
23 smart00129 KISc Kinesin motor, 100.0 1.6E-69 3.6E-74 614.4 35.7 327 378-706 1-334 (335)
24 cd00106 KISc Kinesin motor dom 100.0 4.4E-68 9.5E-73 601.0 35.5 318 378-698 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 1.7E-68 3.8E-73 605.9 26.6 316 384-700 1-335 (335)
26 KOG0244 Kinesin-like protein [ 100.0 7.1E-66 1.5E-70 610.9 22.4 340 385-731 1-349 (913)
27 KOG0246 Kinesin-like protein [ 100.0 1.1E-64 2.4E-69 569.9 27.4 319 377-704 208-545 (676)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.2E-59 2.7E-64 562.2 33.8 304 420-725 55-363 (568)
29 cd01363 Motor_domain Myosin an 100.0 6.5E-50 1.4E-54 417.6 18.5 176 438-679 8-186 (186)
30 PF11721 Malectin: Di-glucose 100.0 5.7E-29 1.2E-33 257.2 11.2 144 37-182 1-174 (174)
31 PLN03150 hypothetical protein; 99.8 8.3E-19 1.8E-23 214.7 16.4 155 35-190 190-365 (623)
32 PF12819 Malectin_like: Carboh 99.6 3.1E-15 6.7E-20 171.1 14.0 153 33-187 175-347 (347)
33 PLN03150 hypothetical protein; 99.5 3.4E-14 7.5E-19 174.3 15.0 145 34-190 21-176 (623)
34 PF12819 Malectin_like: Carboh 99.3 1.4E-11 3E-16 141.2 14.8 146 41-190 1-164 (347)
35 KOG3593 Predicted receptor-lik 99.3 1.7E-12 3.7E-17 138.4 5.0 161 26-189 49-230 (355)
36 COG5059 KIP1 Kinesin-like prot 99.2 7.8E-14 1.7E-18 168.4 -10.1 277 354-644 283-566 (568)
37 COG1196 Smc Chromosome segrega 98.0 0.19 4.1E-06 67.1 48.6 16 546-561 617-632 (1163)
38 COG1196 Smc Chromosome segrega 97.5 0.52 1.1E-05 63.1 41.4 28 350-377 461-488 (1163)
39 KOG0250 DNA repair protein RAD 97.5 0.59 1.3E-05 59.8 41.9 14 482-495 533-546 (1074)
40 KOG0996 Structural maintenance 97.5 0.75 1.6E-05 59.0 41.4 13 105-117 160-172 (1293)
41 PRK11637 AmiB activator; Provi 96.9 0.49 1.1E-05 56.4 28.2 9 974-982 345-353 (428)
42 PRK11637 AmiB activator; Provi 96.9 0.19 4E-06 59.9 24.3 12 714-725 49-60 (428)
43 TIGR02169 SMC_prok_A chromosom 96.7 4.2 9.2E-05 54.2 54.6 13 546-558 624-636 (1164)
44 PF00261 Tropomyosin: Tropomyo 96.5 0.62 1.3E-05 51.1 23.5 50 839-891 172-221 (237)
45 KOG0161 Myosin class II heavy 96.5 0.52 1.1E-05 64.4 26.3 30 721-750 952-981 (1930)
46 KOG0996 Structural maintenance 96.5 4.9 0.00011 52.1 40.9 17 457-473 729-745 (1293)
47 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.27 5.8E-06 49.1 18.0 100 276-375 28-131 (132)
48 KOG4673 Transcription factor T 96.4 0.89 1.9E-05 55.2 24.6 71 822-892 584-662 (961)
49 KOG0250 DNA repair protein RAD 96.4 0.78 1.7E-05 58.7 25.5 21 452-473 61-81 (1074)
50 KOG4673 Transcription factor T 96.3 0.76 1.6E-05 55.7 23.0 208 676-894 399-632 (961)
51 PF07888 CALCOCO1: Calcium bin 96.2 2.1 4.6E-05 51.9 27.0 12 601-612 91-102 (546)
52 TIGR02169 SMC_prok_A chromosom 96.2 1.2 2.5E-05 59.5 27.9 13 459-471 28-40 (1164)
53 PRK02224 chromosome segregatio 96.0 0.51 1.1E-05 61.3 22.4 16 200-215 451-466 (880)
54 PF10481 CENP-F_N: Cenp-F N-te 96.0 0.45 9.7E-06 52.0 17.9 90 287-376 78-189 (307)
55 PF09726 Macoilin: Transmembra 95.9 1.7 3.6E-05 54.8 25.2 19 846-864 597-615 (697)
56 PF12128 DUF3584: Protein of u 95.9 1.6 3.5E-05 58.6 26.8 85 245-329 250-338 (1201)
57 TIGR02168 SMC_prok_B chromosom 95.7 2.4 5.3E-05 56.4 27.7 7 106-112 78-84 (1179)
58 KOG0161 Myosin class II heavy 95.7 2.7 5.9E-05 57.8 27.3 21 871-891 1122-1142(1930)
59 KOG1029 Endocytic adaptor prot 95.7 2.9 6.2E-05 51.7 24.6 26 870-895 566-591 (1118)
60 PF00261 Tropomyosin: Tropomyo 95.7 3 6.5E-05 45.7 23.5 53 841-896 167-219 (237)
61 KOG0977 Nuclear envelope prote 95.6 1 2.2E-05 54.6 20.8 171 199-379 22-213 (546)
62 KOG1853 LIS1-interacting prote 95.5 3.7 8.1E-05 44.5 22.2 97 779-887 88-184 (333)
63 KOG0971 Microtubule-associated 95.5 4.1 8.9E-05 51.2 25.1 38 846-883 458-495 (1243)
64 PF05667 DUF812: Protein of un 95.4 5.9 0.00013 49.1 26.8 43 848-893 489-531 (594)
65 PF15619 Lebercilin: Ciliary p 95.1 5.5 0.00012 42.5 24.0 20 790-809 90-109 (194)
66 PF09726 Macoilin: Transmembra 95.1 1.2 2.5E-05 56.2 20.0 78 300-377 548-629 (697)
67 TIGR02168 SMC_prok_B chromosom 95.0 20 0.00043 47.9 54.9 21 871-891 884-904 (1179)
68 COG4942 Membrane-bound metallo 94.9 11 0.00024 44.5 26.0 9 672-680 24-32 (420)
69 KOG0239 Kinesin (KAR3 subfamil 94.6 0.1 2.2E-06 65.1 9.0 88 419-521 24-111 (670)
70 KOG0933 Structural maintenance 94.6 5.4 0.00012 50.9 23.2 26 543-568 548-573 (1174)
71 PF14662 CCDC155: Coiled-coil 94.6 7.2 0.00016 41.2 23.9 30 852-884 160-189 (193)
72 PF10174 Cast: RIM-binding pro 94.6 13 0.00028 47.5 27.1 39 871-913 476-514 (775)
73 KOG0980 Actin-binding protein 94.5 5.5 0.00012 50.1 22.9 54 216-269 344-397 (980)
74 KOG0971 Microtubule-associated 94.4 8.3 0.00018 48.7 23.9 16 304-319 276-291 (1243)
75 PF10473 CENP-F_leu_zip: Leuci 94.4 5.6 0.00012 40.2 19.0 27 721-747 12-38 (140)
76 PF12718 Tropomyosin_1: Tropom 94.3 6.8 0.00015 39.8 20.1 38 733-770 14-51 (143)
77 KOG0976 Rho/Rac1-interacting s 94.2 8.1 0.00017 48.1 22.8 51 282-332 105-155 (1265)
78 PRK03918 chromosome segregatio 94.0 14 0.00031 48.0 27.3 14 458-471 27-40 (880)
79 PF09730 BicD: Microtubule-ass 94.0 21 0.00046 45.1 26.9 187 711-909 264-474 (717)
80 PHA02562 46 endonuclease subun 94.0 8.9 0.00019 47.1 24.0 17 455-471 28-44 (562)
81 KOG0994 Extracellular matrix g 93.8 15 0.00032 47.7 24.6 42 849-893 1709-1750(1758)
82 KOG1029 Endocytic adaptor prot 93.7 3.1 6.7E-05 51.4 18.2 55 763-817 509-563 (1118)
83 PRK09039 hypothetical protein; 93.7 8.7 0.00019 44.6 21.7 17 224-240 47-63 (343)
84 COG1579 Zn-ribbon protein, pos 93.7 11 0.00023 41.6 20.9 43 227-269 14-56 (239)
85 PF00038 Filament: Intermediat 93.7 15 0.00034 41.6 28.1 59 714-772 77-135 (312)
86 PRK09039 hypothetical protein; 93.6 11 0.00025 43.6 22.3 17 675-694 13-29 (343)
87 PF15070 GOLGA2L5: Putative go 93.5 15 0.00033 45.8 24.6 37 714-750 31-67 (617)
88 KOG3859 Septins (P-loop GTPase 93.5 2.7 5.9E-05 46.6 15.9 29 443-471 30-59 (406)
89 PF12128 DUF3584: Protein of u 93.5 7.9 0.00017 52.3 23.8 30 875-905 772-801 (1201)
90 KOG1937 Uncharacterized conser 93.3 3.8 8.3E-05 47.9 17.3 132 248-380 262-399 (521)
91 PF09730 BicD: Microtubule-ass 93.0 3.5 7.6E-05 51.8 18.0 122 254-375 586-715 (717)
92 KOG4643 Uncharacterized coiled 93.0 36 0.00078 43.9 26.8 43 682-727 251-293 (1195)
93 COG1579 Zn-ribbon protein, pos 93.0 17 0.00037 40.0 23.4 8 735-742 33-40 (239)
94 PF12718 Tropomyosin_1: Tropom 92.9 12 0.00026 38.0 20.9 28 782-809 35-62 (143)
95 KOG0995 Centromere-associated 92.8 29 0.00063 42.2 25.9 24 749-772 303-326 (581)
96 PHA02562 46 endonuclease subun 92.7 16 0.00036 44.8 23.6 13 654-666 149-161 (562)
97 PRK01156 chromosome segregatio 92.7 11 0.00025 49.1 23.3 34 201-240 453-486 (895)
98 COG3883 Uncharacterized protei 92.6 20 0.00044 39.9 23.4 58 714-771 40-97 (265)
99 KOG4643 Uncharacterized coiled 92.6 31 0.00067 44.4 24.8 61 711-771 256-318 (1195)
100 PRK04863 mukB cell division pr 92.6 27 0.00059 48.0 26.6 17 456-472 29-45 (1486)
101 PF05667 DUF812: Protein of un 92.6 3.2 6.9E-05 51.4 16.7 17 364-380 485-501 (594)
102 PF10174 Cast: RIM-binding pro 92.5 35 0.00076 43.8 25.9 39 718-756 321-359 (775)
103 PF00308 Bac_DnaA: Bacterial d 92.4 0.034 7.3E-07 60.1 -0.3 51 421-473 3-53 (219)
104 KOG0804 Cytoplasmic Zn-finger 92.4 4.9 0.00011 47.1 16.7 34 847-886 414-447 (493)
105 PF13851 GAS: Growth-arrest sp 92.4 12 0.00027 40.1 18.9 54 284-337 70-126 (201)
106 PF00038 Filament: Intermediat 92.3 24 0.00051 40.1 27.2 55 842-896 229-284 (312)
107 COG0556 UvrB Helicase subunit 92.3 0.16 3.4E-06 60.4 4.8 91 421-515 3-100 (663)
108 KOG0977 Nuclear envelope prote 92.1 27 0.00059 42.7 23.2 44 621-668 36-82 (546)
109 KOG4593 Mitotic checkpoint pro 92.1 17 0.00037 45.0 21.5 32 869-900 602-633 (716)
110 PRK04863 mukB cell division pr 92.0 57 0.0012 45.0 28.5 14 655-668 211-224 (1486)
111 TIGR01242 26Sp45 26S proteasom 91.9 0.073 1.6E-06 61.9 1.6 17 455-471 157-173 (364)
112 PF08317 Spc7: Spc7 kinetochor 91.7 13 0.00028 42.9 19.5 38 302-339 214-251 (325)
113 PF13851 GAS: Growth-arrest sp 91.5 22 0.00049 38.1 22.1 30 871-900 147-176 (201)
114 PF15619 Lebercilin: Ciliary p 91.4 23 0.00049 37.9 24.0 29 782-810 68-96 (194)
115 PRK04778 septation ring format 91.3 47 0.001 41.3 26.1 15 629-643 203-217 (569)
116 COG0419 SbcC ATPase involved i 91.1 20 0.00043 47.1 22.7 16 199-214 456-471 (908)
117 TIGR00606 rad50 rad50. This fa 91.1 33 0.00071 47.0 25.4 30 237-266 196-225 (1311)
118 KOG4674 Uncharacterized conser 91.0 63 0.0014 44.8 26.7 189 711-900 1242-1448(1822)
119 COG1340 Uncharacterized archae 90.9 33 0.00071 38.8 20.8 33 346-378 204-236 (294)
120 smart00787 Spc7 Spc7 kinetocho 90.8 19 0.00041 41.3 19.4 32 304-335 211-242 (312)
121 PF15066 CAGE1: Cancer-associa 90.7 20 0.00044 42.4 19.3 15 361-375 508-522 (527)
122 KOG0995 Centromere-associated 90.4 23 0.00049 43.2 19.9 70 285-354 275-351 (581)
123 PRK10869 recombination and rep 90.1 54 0.0012 40.6 24.0 17 452-471 23-39 (553)
124 KOG0994 Extracellular matrix g 90.1 76 0.0016 41.7 24.6 33 300-332 1228-1260(1758)
125 TIGR00606 rad50 rad50. This fa 90.0 48 0.0011 45.4 25.5 15 873-887 1027-1041(1311)
126 COG2805 PilT Tfp pilus assembl 90.0 0.14 3E-06 57.3 1.4 30 443-472 114-143 (353)
127 PF04156 IncA: IncA protein; 89.8 11 0.00024 39.6 15.6 62 303-367 129-190 (191)
128 PF04849 HAP1_N: HAP1 N-termin 89.7 29 0.00063 39.5 19.2 20 253-272 208-227 (306)
129 TIGR00634 recN DNA repair prot 89.5 32 0.00069 42.7 21.5 48 841-888 320-367 (563)
130 KOG0612 Rho-associated, coiled 89.4 70 0.0015 42.4 24.1 11 370-380 205-215 (1317)
131 PF10168 Nup88: Nuclear pore c 89.2 38 0.00083 43.2 22.0 22 539-560 385-406 (717)
132 KOG0980 Actin-binding protein 89.0 77 0.0017 40.6 23.5 8 366-373 166-173 (980)
133 KOG0804 Cytoplasmic Zn-finger 88.9 18 0.00039 42.7 17.0 13 578-590 147-159 (493)
134 TIGR03007 pepcterm_ChnLen poly 88.7 29 0.00063 42.1 20.2 12 162-173 120-131 (498)
135 PRK06893 DNA replication initi 88.6 0.26 5.7E-06 53.5 2.3 49 420-473 10-58 (229)
136 COG2804 PulE Type II secretory 88.5 0.2 4.3E-06 59.7 1.4 31 443-473 247-277 (500)
137 KOG4807 F-actin binding protei 88.5 19 0.00042 41.5 16.6 43 194-239 330-372 (593)
138 KOG1899 LAR transmembrane tyro 88.4 22 0.00049 43.3 17.8 29 786-814 178-206 (861)
139 PF07888 CALCOCO1: Calcium bin 88.3 72 0.0016 39.2 53.4 42 845-886 412-457 (546)
140 COG4942 Membrane-bound metallo 88.3 63 0.0014 38.4 25.0 52 717-768 43-94 (420)
141 PF12325 TMF_TATA_bd: TATA ele 88.2 8.1 0.00018 38.1 12.0 8 368-375 101-108 (120)
142 PF08317 Spc7: Spc7 kinetochor 88.0 33 0.00072 39.5 19.0 33 305-337 210-242 (325)
143 PF10481 CENP-F_N: Cenp-F N-te 88.0 16 0.00035 40.5 15.1 58 232-295 5-62 (307)
144 PRK12377 putative replication 87.8 0.2 4.3E-06 55.3 0.7 49 424-473 72-120 (248)
145 KOG0612 Rho-associated, coiled 87.7 1.1E+02 0.0024 40.6 24.4 27 878-904 667-693 (1317)
146 PF06785 UPF0242: Uncharacteri 87.7 49 0.0011 37.7 18.8 56 284-339 128-183 (401)
147 PRK06835 DNA replication prote 87.6 0.13 2.9E-06 59.0 -0.8 55 437-492 167-226 (329)
148 smart00787 Spc7 Spc7 kinetocho 87.5 33 0.00071 39.4 18.2 7 660-666 100-106 (312)
149 KOG0243 Kinesin-like protein [ 87.4 64 0.0014 42.3 22.1 7 632-638 377-383 (1041)
150 PRK04778 septation ring format 87.4 66 0.0014 40.0 22.3 22 305-326 106-127 (569)
151 KOG1853 LIS1-interacting prote 87.3 50 0.0011 36.2 21.5 38 287-324 74-111 (333)
152 COG4372 Uncharacterized protei 87.2 66 0.0014 37.5 27.3 53 632-696 8-67 (499)
153 PF06785 UPF0242: Uncharacteri 87.1 61 0.0013 37.0 20.5 20 869-888 203-222 (401)
154 KOG1003 Actin filament-coating 87.0 45 0.00099 35.4 23.6 48 842-889 136-187 (205)
155 PRK03992 proteasome-activating 87.0 0.59 1.3E-05 55.0 4.1 18 454-471 165-182 (389)
156 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.9 35 0.00076 34.0 18.6 21 841-861 96-116 (132)
157 PRK12704 phosphodiesterase; Pr 86.6 25 0.00055 43.2 17.7 23 939-961 216-238 (520)
158 PRK14086 dnaA chromosomal repl 86.6 0.22 4.7E-06 61.4 0.2 52 420-473 282-333 (617)
159 PTZ00454 26S protease regulato 86.6 0.2 4.4E-06 59.0 -0.0 50 422-471 141-196 (398)
160 PF15070 GOLGA2L5: Putative go 86.6 99 0.0022 38.9 23.9 17 716-732 84-100 (617)
161 PF15254 CCDC14: Coiled-coil d 86.5 1E+02 0.0022 39.1 22.3 6 383-388 39-44 (861)
162 KOG0976 Rho/Rac1-interacting s 86.5 68 0.0015 40.5 20.5 18 1010-1031 818-835 (1265)
163 PRK08084 DNA replication initi 86.4 0.28 6.1E-06 53.6 0.9 49 420-473 16-64 (235)
164 KOG0979 Structural maintenance 85.8 1.3E+02 0.0027 39.4 24.1 27 458-484 46-76 (1072)
165 PRK06620 hypothetical protein; 85.8 0.38 8.2E-06 51.9 1.5 50 420-472 10-62 (214)
166 KOG0964 Structural maintenance 85.8 1.3E+02 0.0027 39.3 23.9 30 870-899 477-506 (1200)
167 PF12325 TMF_TATA_bd: TATA ele 85.7 25 0.00054 34.7 13.8 30 785-814 85-114 (120)
168 PF08614 ATG16: Autophagy prot 85.6 5.1 0.00011 42.6 9.9 42 227-268 71-112 (194)
169 PF10186 Atg14: UV radiation r 85.3 42 0.00091 37.5 17.8 12 198-209 9-20 (302)
170 TIGR03319 YmdA_YtgF conserved 85.0 31 0.00067 42.4 17.3 22 940-961 211-232 (514)
171 COG5185 HEC1 Protein involved 84.9 94 0.002 37.1 21.0 17 755-771 331-347 (622)
172 KOG4360 Uncharacterized coiled 84.9 44 0.00096 40.1 17.5 24 301-324 237-260 (596)
173 PRK08116 hypothetical protein; 84.8 0.4 8.8E-06 53.5 1.2 51 422-473 81-133 (268)
174 KOG0933 Structural maintenance 84.8 1.4E+02 0.003 39.0 45.4 19 625-643 685-703 (1174)
175 PF10473 CENP-F_leu_zip: Leuci 84.8 48 0.001 33.6 17.3 38 302-339 64-101 (140)
176 PRK14088 dnaA chromosomal repl 84.5 0.34 7.4E-06 57.9 0.5 51 420-473 99-149 (440)
177 PRK07952 DNA replication prote 84.5 0.55 1.2E-05 51.8 2.0 50 423-473 69-118 (244)
178 PF09755 DUF2046: Uncharacteri 84.4 81 0.0018 36.0 24.0 41 847-890 139-179 (310)
179 PF15397 DUF4618: Domain of un 84.3 73 0.0016 35.5 18.2 47 287-333 64-110 (258)
180 PRK05642 DNA replication initi 84.3 0.49 1.1E-05 51.7 1.6 51 420-473 13-64 (234)
181 COG4372 Uncharacterized protei 84.3 90 0.002 36.4 26.3 11 871-881 270-280 (499)
182 TIGR00362 DnaA chromosomal rep 83.9 0.4 8.6E-06 56.6 0.7 53 419-473 103-155 (405)
183 PRK00149 dnaA chromosomal repl 83.6 0.43 9.4E-06 57.2 0.9 53 419-473 115-167 (450)
184 KOG1850 Myosin-like coiled-coi 83.4 88 0.0019 35.6 20.9 35 347-381 297-331 (391)
185 PF04949 Transcrip_act: Transc 83.4 55 0.0012 33.2 15.9 89 226-338 37-125 (159)
186 PF10212 TTKRSYEDQ: Predicted 83.2 32 0.00068 41.7 15.8 95 222-323 412-513 (518)
187 PF05701 WEMBL: Weak chloropla 83.2 85 0.0018 38.7 20.2 151 218-376 238-406 (522)
188 PF10168 Nup88: Nuclear pore c 83.1 74 0.0016 40.7 20.1 13 101-113 386-398 (717)
189 PRK02224 chromosome segregatio 83.1 1.6E+02 0.0035 38.4 53.3 11 101-111 77-87 (880)
190 PF10186 Atg14: UV radiation r 82.7 48 0.001 37.0 16.9 11 364-374 145-155 (302)
191 PRK14087 dnaA chromosomal repl 82.5 0.47 1E-05 56.9 0.6 50 422-473 111-160 (450)
192 COG0593 DnaA ATPase involved i 82.4 1.1 2.3E-05 52.9 3.4 51 420-473 81-132 (408)
193 PRK01156 chromosome segregatio 82.2 1.8E+02 0.0038 38.3 26.3 16 456-471 25-40 (895)
194 PRK00106 hypothetical protein; 82.2 1.1E+02 0.0024 37.8 20.3 22 940-961 232-253 (535)
195 KOG0964 Structural maintenance 82.1 1.7E+02 0.0038 38.1 47.0 72 577-661 634-705 (1200)
196 TIGR03420 DnaA_homol_Hda DnaA 81.9 0.83 1.8E-05 48.9 2.1 47 421-472 10-56 (226)
197 KOG4603 TBP-1 interacting prot 81.7 29 0.00064 35.9 12.7 73 302-374 105-180 (201)
198 TIGR01005 eps_transp_fam exopo 81.5 1.7E+02 0.0037 37.7 23.0 11 674-684 159-169 (754)
199 PRK09841 cryptic autophosphory 81.4 1.1E+02 0.0025 39.2 21.2 59 213-273 238-296 (726)
200 PF15450 DUF4631: Domain of un 81.4 1.4E+02 0.003 36.4 22.7 80 780-859 349-428 (531)
201 KOG4593 Mitotic checkpoint pro 81.4 1.6E+02 0.0034 37.1 25.2 11 872-882 280-290 (716)
202 KOG0727 26S proteasome regulat 81.4 7 0.00015 43.0 8.7 75 423-497 152-249 (408)
203 KOG0978 E3 ubiquitin ligase in 81.4 1.6E+02 0.0035 37.3 26.1 16 751-766 458-473 (698)
204 PF10498 IFT57: Intra-flagella 81.2 34 0.00074 40.0 15.0 22 254-275 237-258 (359)
205 PRK08903 DnaA regulatory inact 81.2 0.93 2E-05 48.9 2.2 49 420-472 12-60 (227)
206 KOG4074 Leucine zipper nuclear 81.1 86 0.0019 35.3 16.9 131 251-390 154-285 (383)
207 TIGR03017 EpsF chain length de 80.7 1.3E+02 0.0029 35.8 24.0 32 344-375 337-368 (444)
208 PF05911 DUF869: Plant protein 80.7 1.5E+02 0.0032 38.3 21.3 41 294-334 124-164 (769)
209 PF10146 zf-C4H2: Zinc finger- 80.3 48 0.001 36.4 14.9 15 225-239 10-24 (230)
210 TIGR02928 orc1/cdc6 family rep 80.2 0.81 1.7E-05 52.9 1.4 37 435-471 20-57 (365)
211 KOG4809 Rab6 GTPase-interactin 80.1 1.2E+02 0.0026 37.0 18.7 21 229-249 312-332 (654)
212 PRK10884 SH3 domain-containing 80.0 20 0.00042 38.7 11.6 14 226-239 96-109 (206)
213 PRK09087 hypothetical protein; 80.0 0.98 2.1E-05 49.2 1.9 48 420-472 15-62 (226)
214 COG1484 DnaC DNA replication p 79.9 0.96 2.1E-05 50.2 1.8 49 423-473 76-124 (254)
215 PLN03188 kinesin-12 family pro 79.5 1.5E+02 0.0032 39.8 20.9 20 358-377 1231-1250(1320)
216 PLN02939 transferase, transfer 79.2 2.2E+02 0.0049 37.5 22.5 108 793-900 261-384 (977)
217 KOG0249 LAR-interacting protei 79.2 1.4E+02 0.003 37.6 19.2 12 870-881 247-258 (916)
218 PF15066 CAGE1: Cancer-associa 79.1 1.5E+02 0.0033 35.5 21.9 14 685-698 316-329 (527)
219 PF07889 DUF1664: Protein of u 78.8 35 0.00075 34.0 12.0 22 248-269 54-75 (126)
220 KOG1899 LAR transmembrane tyro 78.7 1.8E+02 0.0038 36.1 22.0 7 946-952 358-364 (861)
221 KOG0018 Structural maintenance 78.7 2.3E+02 0.005 37.4 22.1 38 665-702 92-129 (1141)
222 PRK08727 hypothetical protein; 78.4 1.1 2.5E-05 48.8 1.8 46 421-473 14-60 (233)
223 KOG0999 Microtubule-associated 77.7 1.8E+02 0.0039 35.6 19.6 31 300-330 110-140 (772)
224 PF07111 HCR: Alpha helical co 77.5 2.1E+02 0.0045 36.2 25.4 42 286-327 151-192 (739)
225 PRK00411 cdc6 cell division co 77.5 1.1 2.5E-05 52.2 1.6 36 436-471 36-72 (394)
226 COG5185 HEC1 Protein involved 77.4 1.7E+02 0.0037 35.1 20.7 49 301-349 327-382 (622)
227 PRK08939 primosomal protein Dn 77.2 0.76 1.6E-05 52.4 0.0 51 423-473 124-175 (306)
228 COG1474 CDC6 Cdc6-related prot 77.0 1.1 2.4E-05 52.3 1.3 54 442-510 29-83 (366)
229 TIGR01843 type_I_hlyD type I s 76.9 1.6E+02 0.0034 34.5 20.6 22 870-891 249-270 (423)
230 PF07889 DUF1664: Protein of u 76.9 33 0.00071 34.2 11.2 63 286-348 50-112 (126)
231 PF07106 TBPIP: Tat binding pr 76.8 21 0.00047 36.9 10.6 16 355-370 154-169 (169)
232 PF12329 TMF_DNA_bd: TATA elem 76.7 17 0.00038 32.6 8.5 44 728-771 7-50 (74)
233 PF10267 Tmemb_cc2: Predicted 76.6 99 0.0021 36.7 16.9 12 368-379 74-85 (395)
234 KOG1003 Actin filament-coating 76.5 1.1E+02 0.0024 32.6 23.8 15 758-772 57-71 (205)
235 PRK06526 transposase; Provisio 76.5 0.86 1.9E-05 50.5 0.2 21 451-473 97-117 (254)
236 COG2433 Uncharacterized conser 76.4 28 0.00061 42.7 12.5 34 343-376 475-508 (652)
237 PF05010 TACC: Transforming ac 75.9 1.2E+02 0.0027 32.8 22.0 27 829-855 111-137 (207)
238 PRK10436 hypothetical protein; 75.9 1.1 2.3E-05 54.0 0.8 30 444-473 208-237 (462)
239 KOG2129 Uncharacterized conser 75.7 1.7E+02 0.0038 34.4 19.1 17 367-383 328-344 (552)
240 KOG3850 Predicted membrane pro 75.3 1.7E+02 0.0037 34.2 17.7 13 372-384 136-148 (455)
241 TIGR03319 YmdA_YtgF conserved 75.2 1.3E+02 0.0029 36.9 18.3 6 886-891 172-177 (514)
242 TIGR02538 type_IV_pilB type IV 75.2 1.1 2.4E-05 55.4 0.6 30 444-473 306-335 (564)
243 PF13245 AAA_19: Part of AAA d 75.1 1.2 2.5E-05 40.2 0.6 27 446-473 3-29 (76)
244 PF04111 APG6: Autophagy prote 75.0 38 0.00081 38.9 12.9 10 465-474 215-224 (314)
245 PF10498 IFT57: Intra-flagella 74.8 1.2E+02 0.0027 35.5 17.1 9 91-99 117-125 (359)
246 PF15397 DUF4618: Domain of un 74.2 1.5E+02 0.0033 33.1 23.9 41 868-908 201-245 (258)
247 PF04851 ResIII: Type III rest 73.8 1.3 2.8E-05 45.1 0.6 21 453-473 24-44 (184)
248 PF13863 DUF4200: Domain of un 73.8 92 0.002 30.4 15.7 98 228-332 12-109 (126)
249 PRK08181 transposase; Validate 73.7 1.4 3E-05 49.3 0.9 41 451-493 105-150 (269)
250 TIGR01005 eps_transp_fam exopo 73.6 2.7E+02 0.006 35.8 26.4 16 629-644 80-95 (754)
251 PRK10865 protein disaggregatio 73.5 12 0.00027 48.6 9.5 45 423-471 565-615 (857)
252 cd00046 DEXDc DEAD-like helica 73.5 1.1 2.3E-05 42.6 -0.0 17 457-473 3-19 (144)
253 TIGR02533 type_II_gspE general 73.5 1.5 3.3E-05 53.2 1.2 30 444-473 232-261 (486)
254 KOG3091 Nuclear pore complex, 73.0 73 0.0016 38.4 14.5 30 745-774 339-368 (508)
255 PF06818 Fez1: Fez1; InterPro 72.9 1.4E+02 0.0031 32.1 16.0 38 232-269 12-49 (202)
256 TIGR02746 TraC-F-type type-IV 72.8 9.7 0.00021 49.1 8.4 19 454-472 430-448 (797)
257 PTZ00112 origin recognition co 72.8 1.6 3.4E-05 55.7 1.1 33 439-471 764-798 (1164)
258 KOG4460 Nuclear pore complex, 72.7 95 0.0021 37.7 15.3 21 358-378 704-724 (741)
259 KOG0163 Myosin class VI heavy 72.4 2.8E+02 0.006 35.3 23.3 28 923-950 1027-1054(1259)
260 PF09789 DUF2353: Uncharacteri 72.2 1.9E+02 0.0041 33.3 20.7 14 896-909 214-227 (319)
261 cd00009 AAA The AAA+ (ATPases 72.0 1.8 4E-05 41.5 1.2 19 453-471 18-36 (151)
262 PF09728 Taxilin: Myosin-like 72.0 1.9E+02 0.0041 33.2 23.1 16 794-809 76-91 (309)
263 PF05384 DegS: Sensor protein 71.8 1.3E+02 0.0028 31.2 18.1 82 258-339 34-119 (159)
264 PF13401 AAA_22: AAA domain; P 71.8 1.1 2.3E-05 43.4 -0.5 18 454-471 4-21 (131)
265 PRK10884 SH3 domain-containing 71.7 33 0.00071 37.0 10.7 10 172-181 40-49 (206)
266 PF08581 Tup_N: Tup N-terminal 71.7 75 0.0016 29.1 11.3 38 333-370 37-75 (79)
267 KOG0946 ER-Golgi vesicle-tethe 71.7 3E+02 0.0065 35.4 22.5 7 646-652 522-528 (970)
268 KOG2856 Adaptor protein PACSIN 71.7 2E+02 0.0044 33.4 18.4 126 193-329 20-168 (472)
269 TIGR01420 pilT_fam pilus retra 71.6 1.7 3.7E-05 50.3 1.1 30 444-473 112-141 (343)
270 KOG4360 Uncharacterized coiled 71.4 2.4E+02 0.0053 34.2 18.9 11 626-636 81-91 (596)
271 COG1201 Lhr Lhr-like helicases 71.3 3.7 8E-05 52.4 3.9 24 445-470 30-53 (814)
272 PRK11519 tyrosine kinase; Prov 71.3 3E+02 0.0066 35.3 22.8 59 213-273 238-296 (719)
273 KOG0982 Centrosomal protein Nu 70.8 1.9E+02 0.004 34.4 16.7 26 290-315 325-350 (502)
274 smart00053 DYNc Dynamin, GTPas 70.6 5.6 0.00012 43.8 4.7 53 548-613 86-138 (240)
275 KOG2991 Splicing regulator [RN 70.3 1.2E+02 0.0026 33.5 14.3 38 304-341 264-301 (330)
276 PF14073 Cep57_CLD: Centrosome 70.1 1.5E+02 0.0033 31.3 20.7 29 785-813 60-88 (178)
277 cd01131 PilT Pilus retraction 69.9 1.5 3.2E-05 46.6 0.1 19 454-472 1-19 (198)
278 PRK12422 chromosomal replicati 69.7 2.1 4.5E-05 51.4 1.2 53 419-473 104-160 (445)
279 KOG4807 F-actin binding protei 69.1 2.3E+02 0.0051 33.1 17.5 17 225-241 347-363 (593)
280 KOG0999 Microtubule-associated 69.1 2.8E+02 0.0061 34.0 24.2 25 833-857 153-177 (772)
281 TIGR02524 dot_icm_DotB Dot/Icm 69.0 2.1 4.7E-05 49.8 1.1 25 449-473 129-153 (358)
282 smart00382 AAA ATPases associa 68.8 1.6 3.4E-05 41.4 -0.0 19 455-473 3-21 (148)
283 KOG0946 ER-Golgi vesicle-tethe 68.6 2.2E+02 0.0047 36.5 17.6 50 281-330 648-697 (970)
284 TIGR02525 plasmid_TraJ plasmid 68.5 2.2 4.7E-05 50.0 1.0 27 445-472 141-167 (372)
285 COG5008 PilU Tfp pilus assembl 68.2 3.1 6.7E-05 46.1 2.0 35 438-472 109-145 (375)
286 PF00769 ERM: Ezrin/radixin/mo 68.1 2E+02 0.0043 31.9 16.7 12 228-239 10-21 (246)
287 PF09787 Golgin_A5: Golgin sub 68.1 3E+02 0.0064 33.9 22.2 12 683-694 159-170 (511)
288 PF11932 DUF3450: Protein of u 68.0 1.5E+02 0.0032 32.8 15.2 14 481-494 221-234 (251)
289 KOG4438 Centromere-associated 68.0 2.6E+02 0.0057 33.2 21.7 21 751-771 170-190 (446)
290 TIGR03015 pepcterm_ATPase puta 67.8 2.7 5.9E-05 46.2 1.6 24 448-471 37-60 (269)
291 PF00270 DEAD: DEAD/DEAH box h 67.7 3.1 6.8E-05 41.9 1.9 27 445-473 7-33 (169)
292 PF01935 DUF87: Domain of unkn 67.2 1.7 3.7E-05 46.8 -0.2 16 457-472 26-41 (229)
293 PF09755 DUF2046: Uncharacteri 67.0 2.4E+02 0.0052 32.4 25.5 33 855-889 168-200 (310)
294 PF12846 AAA_10: AAA-like doma 66.7 1.8 4E-05 47.8 -0.1 19 454-472 1-19 (304)
295 cd01129 PulE-GspE PulE/GspE Th 66.5 2.7 5.8E-05 46.9 1.2 29 444-472 70-98 (264)
296 PRK06921 hypothetical protein; 66.5 3.3 7.1E-05 46.3 1.9 36 438-473 98-136 (266)
297 TIGR03007 pepcterm_ChnLen poly 66.4 3E+02 0.0066 33.4 26.8 25 667-691 119-143 (498)
298 PF15294 Leu_zip: Leucine zipp 66.1 1.8E+02 0.004 32.8 15.2 46 221-266 130-175 (278)
299 PF13166 AAA_13: AAA domain 66.0 3.7E+02 0.008 34.2 23.1 11 201-211 256-267 (712)
300 PF13604 AAA_30: AAA domain; P 65.9 2.6 5.7E-05 44.7 0.9 29 444-472 8-36 (196)
301 PRK12402 replication factor C 65.9 2.1 4.5E-05 48.7 0.2 43 423-472 12-54 (337)
302 PRK11281 hypothetical protein; 65.6 2.1E+02 0.0046 38.6 18.1 15 943-957 331-345 (1113)
303 TIGR00631 uvrb excinuclease AB 65.5 4.5 9.7E-05 50.9 3.0 89 423-515 2-97 (655)
304 TIGR02680 conserved hypothetic 65.4 5.3E+02 0.011 35.8 24.7 16 457-472 27-42 (1353)
305 PF06705 SF-assemblin: SF-asse 65.4 2.2E+02 0.0048 31.4 26.6 28 787-814 90-117 (247)
306 PF05483 SCP-1: Synaptonemal c 65.3 3.7E+02 0.008 34.0 26.1 7 450-456 8-14 (786)
307 PF08702 Fib_alpha: Fibrinogen 65.3 1.7E+02 0.0036 30.0 16.6 25 216-240 22-46 (146)
308 KOG4687 Uncharacterized coiled 65.2 1.2E+02 0.0027 33.7 13.2 52 230-281 9-60 (389)
309 KOG0240 Kinesin (SMY1 subfamil 65.2 3.3E+02 0.0072 33.6 17.9 8 486-493 182-189 (607)
310 PF00437 T2SE: Type II/IV secr 65.1 2.5 5.4E-05 46.9 0.6 18 454-471 127-144 (270)
311 KOG3859 Septins (P-loop GTPase 64.7 1.4E+02 0.003 33.8 13.5 72 802-886 325-396 (406)
312 TIGR01843 type_I_hlyD type I s 64.7 2.8E+02 0.0061 32.4 22.5 18 873-890 245-262 (423)
313 COG2433 Uncharacterized conser 64.3 89 0.0019 38.6 13.1 18 173-190 286-303 (652)
314 PF04899 MbeD_MobD: MbeD/MobD 63.9 50 0.0011 29.6 8.3 52 287-338 11-62 (70)
315 KOG1850 Myosin-like coiled-coi 63.6 2.7E+02 0.0059 31.9 24.9 15 846-860 225-239 (391)
316 TIGR02680 conserved hypothetic 63.0 2.6E+02 0.0056 38.7 19.0 13 577-589 1220-1232(1353)
317 PF11559 ADIP: Afadin- and alp 63.0 1.8E+02 0.0038 29.5 15.3 24 301-324 98-121 (151)
318 KOG2751 Beclin-like protein [S 62.9 94 0.002 36.9 12.5 33 631-669 369-407 (447)
319 TIGR03185 DNA_S_dndD DNA sulfu 62.6 1.6E+02 0.0034 37.3 15.9 9 124-132 117-125 (650)
320 PF14662 CCDC155: Coiled-coil 62.6 2.2E+02 0.0048 30.4 24.1 6 740-745 43-48 (193)
321 KOG0018 Structural maintenance 62.6 5E+02 0.011 34.5 25.4 21 545-565 533-553 (1141)
322 PF01637 Arch_ATPase: Archaeal 62.5 2.3 4.9E-05 45.0 -0.3 30 443-472 9-38 (234)
323 PF01695 IstB_IS21: IstB-like 62.2 4 8.8E-05 42.7 1.5 19 455-473 48-66 (178)
324 KOG0978 E3 ubiquitin ligase in 62.1 4.3E+02 0.0094 33.7 24.0 25 730-754 458-482 (698)
325 KOG2891 Surface glycoprotein [ 61.9 2.7E+02 0.0058 31.2 17.8 20 846-865 403-422 (445)
326 PRK13894 conjugal transfer ATP 61.9 3.7 8E-05 47.2 1.2 29 443-472 138-166 (319)
327 PF05911 DUF869: Plant protein 61.8 4.7E+02 0.01 34.0 39.6 41 287-327 124-164 (769)
328 PF13191 AAA_16: AAA ATPase do 61.6 1.8 3.8E-05 44.4 -1.3 29 443-471 13-41 (185)
329 PF13207 AAA_17: AAA domain; P 61.2 3.5 7.6E-05 39.4 0.8 16 456-471 1-16 (121)
330 PF04111 APG6: Autophagy prote 61.2 90 0.0019 35.9 12.2 35 628-668 237-278 (314)
331 TIGR03185 DNA_S_dndD DNA sulfu 61.1 3.6E+02 0.0078 34.2 18.7 10 103-112 83-92 (650)
332 TIGR01069 mutS2 MutS2 family p 61.0 2.1E+02 0.0045 37.1 16.6 17 455-471 323-339 (771)
333 PF08172 CASP_C: CASP C termin 61.0 80 0.0017 35.1 11.3 43 280-322 83-125 (248)
334 KOG2129 Uncharacterized conser 61.0 3.4E+02 0.0074 32.1 27.7 21 959-979 376-396 (552)
335 PF13479 AAA_24: AAA domain 60.9 3.5 7.5E-05 44.3 0.8 20 454-473 3-22 (213)
336 PF09789 DUF2353: Uncharacteri 60.8 3.1E+02 0.0068 31.6 21.3 74 298-371 127-218 (319)
337 TIGR00634 recN DNA repair prot 60.6 3.6E+02 0.0077 33.6 18.2 25 471-495 466-490 (563)
338 KOG4403 Cell surface glycoprot 60.5 3.6E+02 0.0077 32.2 16.4 71 247-320 255-325 (575)
339 PF00448 SRP54: SRP54-type pro 60.2 2.7 5.9E-05 44.7 -0.2 17 456-472 3-19 (196)
340 PF07851 TMPIT: TMPIT-like pro 60.1 63 0.0014 37.3 10.5 19 246-264 2-20 (330)
341 cd07656 F-BAR_srGAP The F-BAR 60.1 2.7E+02 0.006 30.7 21.4 46 222-267 32-89 (241)
342 PF11932 DUF3450: Protein of u 59.7 1.7E+02 0.0036 32.4 13.8 6 377-382 166-171 (251)
343 PF04849 HAP1_N: HAP1 N-termin 59.4 3.2E+02 0.007 31.3 23.3 18 871-888 273-290 (306)
344 PRK09183 transposase/IS protei 58.8 4.5 9.7E-05 45.0 1.2 21 451-473 101-121 (259)
345 PF15254 CCDC14: Coiled-coil d 58.5 5.1E+02 0.011 33.3 22.2 14 548-561 246-259 (861)
346 PF01576 Myosin_tail_1: Myosin 58.5 3.2 7E-05 53.8 0.0 69 793-861 718-789 (859)
347 PF14915 CCDC144C: CCDC144C pr 58.3 3.3E+02 0.0071 31.1 25.3 13 872-884 233-245 (305)
348 PF03422 CBM_6: Carbohydrate b 58.1 1.8E+02 0.0038 27.9 12.6 86 92-185 33-124 (125)
349 PF00769 ERM: Ezrin/radixin/mo 57.9 3E+02 0.0065 30.5 16.3 11 229-239 4-14 (246)
350 PF14992 TMCO5: TMCO5 family 57.9 2.9E+02 0.0063 31.3 14.8 31 714-744 13-43 (280)
351 PF13870 DUF4201: Domain of un 57.9 2.4E+02 0.0052 29.4 18.3 120 233-363 45-173 (177)
352 PRK13342 recombination factor 57.8 5.8 0.00013 47.1 2.0 37 435-471 17-53 (413)
353 PF11559 ADIP: Afadin- and alp 57.8 2.2E+02 0.0047 28.8 16.5 10 230-239 38-47 (151)
354 TIGR02782 TrbB_P P-type conjug 57.7 4.5 9.8E-05 46.0 1.0 29 443-472 122-150 (299)
355 PF09738 DUF2051: Double stran 57.7 1.8E+02 0.0039 33.4 13.5 21 870-890 150-170 (302)
356 PRK00409 recombination and DNA 57.5 3E+02 0.0066 35.7 17.3 18 455-472 328-345 (782)
357 TIGR00763 lon ATP-dependent pr 57.0 23 0.0005 45.7 7.2 199 194-469 154-362 (775)
358 KOG0989 Replication factor C, 56.9 5.7 0.00012 45.0 1.6 43 429-471 30-74 (346)
359 PF13086 AAA_11: AAA domain; P 56.6 4.5 9.8E-05 42.7 0.7 28 445-473 9-36 (236)
360 KOG1103 Predicted coiled-coil 56.5 3.7E+02 0.0079 31.1 18.2 17 629-645 57-73 (561)
361 TIGR01000 bacteriocin_acc bact 56.3 4.3E+02 0.0094 31.8 17.6 18 444-461 367-384 (457)
362 PF06818 Fez1: Fez1; InterPro 56.0 2.9E+02 0.0064 29.8 21.3 51 711-761 9-59 (202)
363 PRK00409 recombination and DNA 55.8 3.2E+02 0.0069 35.5 17.1 27 450-490 730-756 (782)
364 KOG4302 Microtubule-associated 55.8 5.3E+02 0.012 32.7 19.3 32 714-745 105-136 (660)
365 COG2256 MGS1 ATPase related to 55.7 6.7 0.00015 45.9 1.9 44 422-469 20-63 (436)
366 PF02562 PhoH: PhoH-like prote 55.7 7.3 0.00016 41.9 2.1 19 453-471 18-36 (205)
367 KOG0963 Transcription factor/C 55.7 5.1E+02 0.011 32.4 23.4 185 713-903 146-351 (629)
368 KOG0335 ATP-dependent RNA heli 55.5 4.1 8.9E-05 48.7 0.2 62 446-513 105-189 (482)
369 TIGR01069 mutS2 MutS2 family p 55.1 3.1E+02 0.0067 35.6 16.7 11 451-461 720-730 (771)
370 TIGR00635 ruvB Holliday juncti 55.1 4.9 0.00011 45.2 0.7 38 434-471 8-47 (305)
371 PF00004 AAA: ATPase family as 54.9 4.8 0.0001 38.6 0.6 15 457-471 1-15 (132)
372 PRK13833 conjugal transfer pro 54.7 5.3 0.00011 46.0 0.9 29 443-472 134-162 (323)
373 PF09731 Mitofilin: Mitochondr 54.5 5.2E+02 0.011 32.2 22.1 18 475-492 490-507 (582)
374 KOG2077 JNK/SAPK-associated pr 54.2 81 0.0018 38.4 10.3 16 450-465 525-540 (832)
375 COG4026 Uncharacterized protei 53.8 97 0.0021 33.6 9.8 17 244-260 138-154 (290)
376 COG4962 CpaF Flp pilus assembl 53.5 5.4 0.00012 45.9 0.7 29 443-472 163-191 (355)
377 KOG1962 B-cell receptor-associ 53.5 67 0.0014 34.9 8.8 20 307-326 182-201 (216)
378 PF05622 HOOK: HOOK protein; 53.4 4.4 9.5E-05 51.6 0.0 14 716-729 243-256 (713)
379 PF09304 Cortex-I_coil: Cortex 53.4 2.2E+02 0.0048 27.6 14.0 37 281-317 35-71 (107)
380 PF06705 SF-assemblin: SF-asse 53.2 3.5E+02 0.0076 29.8 25.6 45 791-835 87-131 (247)
381 PF04871 Uso1_p115_C: Uso1 / p 52.6 2.6E+02 0.0057 28.2 14.5 33 347-379 82-114 (136)
382 COG3074 Uncharacterized protei 52.3 1.7E+02 0.0037 26.0 9.4 39 301-339 15-53 (79)
383 PF00580 UvrD-helicase: UvrD/R 52.2 5 0.00011 44.6 0.2 22 452-473 11-32 (315)
384 PRK10869 recombination and rep 52.1 5.6E+02 0.012 31.9 19.7 28 470-497 455-482 (553)
385 PF01576 Myosin_tail_1: Myosin 52.0 4.8 0.0001 52.3 0.0 27 349-375 243-269 (859)
386 KOG0926 DEAH-box RNA helicase 52.0 8.5 0.00018 48.3 2.1 36 453-488 270-319 (1172)
387 PF13671 AAA_33: AAA domain; P 51.9 6.2 0.00013 38.8 0.8 16 456-471 1-16 (143)
388 smart00487 DEXDc DEAD-like hel 51.7 7.3 0.00016 39.4 1.3 28 445-473 16-43 (201)
389 PF05483 SCP-1: Synaptonemal c 51.5 6.1E+02 0.013 32.1 25.5 14 652-665 127-140 (786)
390 PRK13341 recombination factor 51.1 7.5 0.00016 49.5 1.5 46 423-472 25-70 (725)
391 cd00268 DEADc DEAD-box helicas 50.9 8.2 0.00018 40.4 1.6 25 444-470 28-52 (203)
392 PLN03025 replication factor C 50.9 6.5 0.00014 44.9 0.9 18 456-473 36-53 (319)
393 PF10211 Ax_dynein_light: Axon 50.9 3.3E+02 0.0073 28.9 14.7 10 163-172 17-26 (189)
394 PTZ00361 26 proteosome regulat 50.7 91 0.002 37.6 10.4 16 456-471 219-234 (438)
395 PF07106 TBPIP: Tat binding pr 50.7 1.4E+02 0.003 30.9 10.6 35 711-745 71-105 (169)
396 PF06309 Torsin: Torsin; Inte 50.6 4.1 8.9E-05 40.4 -0.7 30 441-470 36-69 (127)
397 cd01130 VirB11-like_ATPase Typ 50.5 6.9 0.00015 41.0 0.9 30 442-472 14-43 (186)
398 PF00910 RNA_helicase: RNA hel 50.1 4.2 9.1E-05 38.7 -0.7 15 457-471 1-15 (107)
399 PF09787 Golgin_A5: Golgin sub 50.1 5.8E+02 0.012 31.4 22.9 7 874-880 320-326 (511)
400 PRK13851 type IV secretion sys 50.0 5.3 0.00012 46.3 -0.0 30 443-473 152-181 (344)
401 PF00063 Myosin_head: Myosin h 49.8 6.8 0.00015 49.7 0.9 35 437-471 67-102 (689)
402 PF12004 DUF3498: Domain of un 49.5 5.5 0.00012 48.1 0.0 69 204-272 341-418 (495)
403 PF13238 AAA_18: AAA domain; P 49.3 6.7 0.00015 37.4 0.6 15 457-471 1-15 (129)
404 PRK09841 cryptic autophosphory 49.2 2.7E+02 0.0059 35.8 15.0 20 454-473 532-551 (726)
405 COG0497 RecN ATPase involved i 49.1 4.2E+02 0.0091 33.0 15.6 128 226-376 258-388 (557)
406 PF07798 DUF1640: Protein of u 49.1 3.4E+02 0.0073 28.4 15.5 106 218-323 46-157 (177)
407 PRK12723 flagellar biosynthesi 49.0 6.2 0.00014 46.5 0.3 18 455-472 175-192 (388)
408 PF05970 PIF1: PIF1-like helic 48.8 6.6 0.00014 45.9 0.5 36 433-471 4-39 (364)
409 PF01580 FtsK_SpoIIIE: FtsK/Sp 48.6 5 0.00011 42.5 -0.5 17 456-472 40-56 (205)
410 PRK06547 hypothetical protein; 48.6 12 0.00026 39.1 2.3 27 445-471 6-32 (172)
411 PRK10361 DNA recombination pro 48.5 5.9E+02 0.013 31.1 25.4 34 848-881 145-179 (475)
412 PHA00729 NTP-binding motif con 48.4 12 0.00025 41.0 2.2 29 444-472 7-35 (226)
413 KOG3915 Transcription regulato 48.2 1.6E+02 0.0034 35.2 11.2 64 231-297 500-563 (641)
414 PLN03137 ATP-dependent DNA hel 48.1 99 0.0021 41.4 10.7 27 443-471 466-492 (1195)
415 PRK13900 type IV secretion sys 48.1 7.4 0.00016 45.0 0.7 29 443-472 150-178 (332)
416 PRK13764 ATPase; Provisional 48.0 7.5 0.00016 48.3 0.8 22 452-473 255-276 (602)
417 KOG4438 Centromere-associated 47.9 5.6E+02 0.012 30.7 21.9 11 684-694 74-84 (446)
418 KOG0288 WD40 repeat protein Ti 47.7 2.5E+02 0.0054 33.3 12.6 27 447-473 212-238 (459)
419 PF09403 FadA: Adhesion protei 47.4 3.1E+02 0.0066 27.5 14.3 20 225-244 22-41 (126)
420 TIGR03499 FlhF flagellar biosy 47.4 6.3 0.00014 44.4 0.0 18 456-473 196-213 (282)
421 PRK10929 putative mechanosensi 47.0 9.1E+02 0.02 32.8 23.1 187 718-905 43-242 (1109)
422 PF06156 DUF972: Protein of un 46.8 1.1E+02 0.0023 29.8 8.2 35 299-333 3-37 (107)
423 PF03148 Tektin: Tektin family 46.7 5.6E+02 0.012 30.3 20.4 22 349-370 331-352 (384)
424 PF05496 RuvB_N: Holliday junc 46.5 16 0.00034 40.0 2.9 38 432-469 26-65 (233)
425 PF02841 GBP_C: Guanylate-bind 46.3 4.9E+02 0.011 29.5 23.1 12 649-660 25-36 (297)
426 COG3206 GumC Uncharacterized p 46.2 5.8E+02 0.013 30.7 16.5 15 373-387 404-418 (458)
427 PF07794 DUF1633: Protein of u 46.0 3.2E+02 0.0069 33.0 13.2 43 657-699 511-553 (790)
428 PRK11192 ATP-dependent RNA hel 45.9 10 0.00022 45.1 1.4 26 444-471 30-55 (434)
429 PLN03229 acetyl-coenzyme A car 45.8 7.8E+02 0.017 31.7 17.6 194 679-888 528-733 (762)
430 PF07724 AAA_2: AAA domain (Cd 45.8 7.7 0.00017 40.4 0.4 17 455-471 4-20 (171)
431 cd07685 F-BAR_Fes The F-BAR (F 45.8 4.6E+02 0.0099 29.0 17.8 47 221-267 31-88 (237)
432 COG1223 Predicted ATPase (AAA+ 45.4 7.7 0.00017 43.0 0.3 16 455-470 152-167 (368)
433 TIGR02231 conserved hypothetic 45.4 4.3E+02 0.0092 32.5 15.4 155 127-330 6-171 (525)
434 KOG4809 Rab6 GTPase-interactin 45.3 6.8E+02 0.015 30.9 17.5 21 356-376 549-569 (654)
435 PRK11776 ATP-dependent RNA hel 45.3 13 0.00029 44.5 2.3 25 444-470 33-57 (460)
436 PF10212 TTKRSYEDQ: Predicted 45.1 6.8E+02 0.015 30.8 21.4 47 846-892 465-512 (518)
437 KOG2077 JNK/SAPK-associated pr 45.0 5.8E+02 0.013 31.6 15.3 22 305-326 358-379 (832)
438 PHA02544 44 clamp loader, smal 44.5 9.7 0.00021 43.1 1.0 22 451-472 39-61 (316)
439 PF06414 Zeta_toxin: Zeta toxi 44.4 7.9 0.00017 41.0 0.2 20 452-471 13-32 (199)
440 PF05557 MAD: Mitotic checkpoi 44.4 7.4 0.00016 49.7 0.0 37 869-905 608-644 (722)
441 KOG4603 TBP-1 interacting prot 44.4 4E+02 0.0087 28.0 13.8 12 685-696 43-54 (201)
442 PF09728 Taxilin: Myosin-like 44.3 5.5E+02 0.012 29.5 27.8 17 796-812 107-123 (309)
443 PRK04837 ATP-dependent RNA hel 44.2 11 0.00023 44.8 1.3 26 444-471 37-62 (423)
444 PF10234 Cluap1: Clusterin-ass 43.9 5.2E+02 0.011 29.2 16.9 15 309-323 195-209 (267)
445 KOG2751 Beclin-like protein [S 43.8 4.1E+02 0.0089 31.8 13.7 11 948-958 335-345 (447)
446 PF15272 BBP1_C: Spindle pole 43.8 4.5E+02 0.0096 28.3 16.5 119 786-904 9-144 (196)
447 PF11802 CENP-K: Centromere-as 43.5 5.2E+02 0.011 29.1 16.5 23 352-374 157-179 (268)
448 PF05622 HOOK: HOOK protein; 43.4 7.8 0.00017 49.4 0.0 14 227-240 130-143 (713)
449 PF12777 MT: Microtubule-bindi 43.4 76 0.0016 36.9 8.1 31 289-319 283-313 (344)
450 PRK04195 replication factor C 43.4 13 0.00028 45.1 1.8 37 435-471 19-56 (482)
451 COG4477 EzrA Negative regulato 43.4 7.2E+02 0.016 30.7 23.0 14 684-697 227-240 (570)
452 PF14988 DUF4515: Domain of un 43.2 4.6E+02 0.01 28.3 22.0 155 213-375 2-175 (206)
453 PF07111 HCR: Alpha helical co 43.2 8.2E+02 0.018 31.2 20.7 34 829-862 317-350 (739)
454 PF05837 CENP-H: Centromere pr 43.2 2.9E+02 0.0063 26.6 10.6 69 305-373 11-82 (106)
455 PF03215 Rad17: Rad17 cell cyc 43.1 11 0.00023 46.3 1.0 31 441-471 30-62 (519)
456 KOG2991 Splicing regulator [RN 43.1 5.1E+02 0.011 28.9 22.1 9 872-880 283-291 (330)
457 PF15290 Syntaphilin: Golgi-lo 43.1 4.5E+02 0.0097 29.8 13.1 98 267-375 63-168 (305)
458 PRK10590 ATP-dependent RNA hel 43.0 12 0.00027 44.9 1.6 26 444-471 30-55 (456)
459 TIGR02881 spore_V_K stage V sp 42.9 8.5 0.00018 42.6 0.2 17 455-471 43-59 (261)
460 KOG0354 DEAD-box like helicase 42.9 16 0.00034 46.2 2.5 42 426-470 44-92 (746)
461 PF03962 Mnd1: Mnd1 family; I 42.8 4.4E+02 0.0096 28.0 13.3 99 789-899 62-160 (188)
462 PTZ00424 helicase 45; Provisio 42.6 15 0.00033 42.9 2.2 27 443-471 56-82 (401)
463 PF12329 TMF_DNA_bd: TATA elem 42.6 2.6E+02 0.0056 25.2 9.8 20 747-766 5-24 (74)
464 PRK00440 rfc replication facto 42.6 8.7 0.00019 43.2 0.2 21 451-471 35-55 (319)
465 KOG4364 Chromatin assembly fac 42.5 8.1E+02 0.018 31.0 17.2 14 677-690 187-200 (811)
466 KOG1514 Origin recognition com 42.5 29 0.00063 43.4 4.6 36 438-473 404-441 (767)
467 PRK10536 hypothetical protein; 42.4 15 0.00032 41.0 1.9 41 422-471 51-91 (262)
468 PF03961 DUF342: Protein of un 42.3 1.4E+02 0.0031 35.9 10.5 44 344-387 377-422 (451)
469 smart00763 AAA_PrkA PrkA AAA d 42.3 26 0.00055 41.0 3.9 42 425-470 49-94 (361)
470 PF07728 AAA_5: AAA domain (dy 42.2 10 0.00022 37.4 0.5 15 457-471 2-16 (139)
471 TIGR00348 hsdR type I site-spe 42.0 13 0.00028 47.1 1.6 32 441-473 246-282 (667)
472 KOG0728 26S proteasome regulat 42.0 3.2E+02 0.007 30.5 11.8 16 453-468 180-195 (404)
473 COG1382 GimC Prefoldin, chaper 41.7 3.6E+02 0.0079 26.7 12.8 20 305-324 71-90 (119)
474 COG1219 ClpX ATP-dependent pro 41.7 11 0.00024 43.0 0.8 17 454-470 97-113 (408)
475 KOG0962 DNA repair protein RAD 41.6 1.1E+03 0.024 32.3 22.1 167 711-888 208-377 (1294)
476 PF05266 DUF724: Protein of un 41.4 3.3E+02 0.0072 29.1 11.8 23 302-324 129-151 (190)
477 PF04949 Transcrip_act: Transc 41.3 4.1E+02 0.0089 27.3 16.1 74 249-325 32-105 (159)
478 PF07495 Y_Y_Y: Y_Y_Y domain; 41.0 60 0.0013 27.6 5.2 36 94-130 30-65 (66)
479 PF06160 EzrA: Septation ring 40.7 8.2E+02 0.018 30.5 24.7 25 305-329 102-126 (560)
480 PF15372 DUF4600: Domain of un 40.6 3.9E+02 0.0086 26.8 11.4 29 357-385 87-115 (129)
481 KOG3215 Uncharacterized conser 40.5 5.1E+02 0.011 28.0 16.2 28 291-318 97-124 (222)
482 KOG4302 Microtubule-associated 40.5 6.4E+02 0.014 32.1 15.5 43 221-263 231-273 (660)
483 smart00242 MYSc Myosin. Large 40.4 14 0.00031 46.7 1.7 36 436-471 73-109 (677)
484 PRK14722 flhF flagellar biosyn 40.4 10 0.00022 44.6 0.3 18 455-472 138-155 (374)
485 PRK03947 prefoldin subunit alp 40.4 3.9E+02 0.0084 26.6 13.4 32 302-333 92-123 (140)
486 TIGR00929 VirB4_CagE type IV s 40.3 33 0.00071 44.1 4.9 150 298-471 277-451 (785)
487 cd01381 MYSc_type_VII Myosin m 40.2 18 0.00038 45.8 2.4 33 438-470 69-102 (671)
488 PF06160 EzrA: Septation ring 39.8 8.4E+02 0.018 30.4 25.5 214 683-896 86-331 (560)
489 KOG2543 Origin recognition com 39.7 9.4 0.0002 44.5 -0.1 15 457-471 33-47 (438)
490 PRK10476 multidrug resistance 39.7 6.4E+02 0.014 29.0 15.7 114 245-358 87-206 (346)
491 cd01385 MYSc_type_IX Myosin mo 39.7 17 0.00037 46.2 2.1 33 438-470 77-110 (692)
492 cd07653 F-BAR_CIP4-like The F- 39.7 5.4E+02 0.012 28.1 20.3 142 221-364 31-190 (251)
493 PF05673 DUF815: Protein of un 39.7 17 0.00037 40.2 1.8 51 446-518 43-94 (249)
494 cd01383 MYSc_type_VIII Myosin 39.4 19 0.00041 45.7 2.4 33 438-470 75-108 (677)
495 COG0419 SbcC ATPase involved i 39.4 1E+03 0.023 31.4 27.3 191 715-912 270-463 (908)
496 KOG4460 Nuclear pore complex, 39.4 8.3E+02 0.018 30.2 19.2 164 732-896 558-731 (741)
497 cd01387 MYSc_type_XV Myosin mo 39.3 17 0.00037 46.1 2.0 34 438-471 70-104 (677)
498 KOG4572 Predicted DNA-binding 39.3 9.8E+02 0.021 31.0 16.4 161 211-381 953-1117(1424)
499 PRK00080 ruvB Holliday junctio 39.3 14 0.00029 42.4 1.1 41 429-469 24-66 (328)
500 cd01384 MYSc_type_XI Myosin mo 39.1 18 0.00038 45.9 2.1 33 438-470 71-104 (674)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.5e-94 Score=863.69 Aligned_cols=485 Identities=44% Similarity=0.599 Sum_probs=403.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHH
Q 001679 223 KATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYW 302 (1032)
Q Consensus 223 k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 302 (1032)
|...+++.++..+..+++...+.+.+++..++....+-..+...+. .....+.....+. ......
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~--------~~~~~~~~~~~l~-------~~~~~~ 239 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG--------NYADLRRNIKPLE-------GLESTI 239 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhhHHHhhhhhh-------hhhhHH
Confidence 4467777788888888877777777777776663333333333222 0111222222222 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEE
Q 001679 303 AAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVI-GVQALVAQCEDFKMKYSEEQAKRKELYNQIQQTRGNIRV 381 (1032)
Q Consensus 303 ~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~elkgnIrV 381 (1032)
...+..|+.++..++.++..+..+...+...+++.-.... .+..+......+.+++ +|+.+||+|||+|+||||||||
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceE
Confidence 3346666666666666666666666665555444433222 2555666667788888 9999999999999999999999
Q ss_pred EEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCc----eeeecceEECCCCCchhhhhcchHHHHHHhcCcceEE
Q 001679 382 FCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTR----KTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCI 457 (1032)
Q Consensus 382 ~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~----~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~I 457 (1032)
||||||+.+.+....+..++.++.. +++.+..+.... +.|.||+||+|.++|.+||.++.|+|++||||||+||
T Consensus 319 ~CRvRP~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCI 396 (670)
T KOG0239|consen 319 FCRVRPLLPSEKQRLQSKVIDTEEQ--GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCI 396 (670)
T ss_pred EEEecCCCccccccccccccccCCc--ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeE
Confidence 9999999998877655556655532 344443332222 3599999999999999999999999999999999999
Q ss_pred EeecccCCCcceEeec-cCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCccccccccCCC
Q 001679 458 FAYGQTGTGKTFTMEG-TEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEG 536 (1032)
Q Consensus 458 faYGqTGSGKTyTm~G-~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~~~~~~ 536 (1032)
||||||||||||||.| +++++|||||++.+||..+.....+|.|.+.+||+|||||.|+|||.+.+...++.|+++.++
T Consensus 397 FAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~ 476 (670)
T KOG0239|consen 397 FAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEG 476 (670)
T ss_pred EEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCC
Confidence 9999999999999999 689999999999999999999888999999999999999999999997655678999999999
Q ss_pred ceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceeeeeeeEeecCCCcccCCC
Q 001679 537 SHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRT 616 (1032)
Q Consensus 537 ~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~s 616 (1032)
..+|++++.+.|.+.++++.+++.|..+|++++|.+|++|||||+||+|+|.+.+..++..+.|.|+|||||||||++++
T Consensus 477 ~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s 556 (670)
T KOG0239|consen 477 NLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKS 556 (670)
T ss_pred ceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHHHHHHHHH
Q 001679 617 DVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQ 696 (1032)
Q Consensus 617 ~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL~fA~r 696 (1032)
+++|+|++|+++||+||++||+||.||+.+..||||||||||+|||++|||++||+|||+|||...++.||+++|+||+|
T Consensus 557 ~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~r 636 (670)
T KOG0239|consen 557 GVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATR 636 (670)
T ss_pred CCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccccChHHHHHHHHHHHHHH
Q 001679 697 VRGVELGPARKQIDTSELQKMKVMLEKAR 725 (1032)
Q Consensus 697 ~~~i~~~p~~~~~~~~el~~lk~~l~~~~ 725 (1032)
|+.+++++++.+....+...++.....++
T Consensus 637 v~~~~lG~a~~~~~~~~~~~~~~~~~~~~ 665 (670)
T KOG0239|consen 637 VRSVELGSARKQVSTSDDVSLKRFGQLEK 665 (670)
T ss_pred hhceecccccccccccchhhhhhhhhhhh
Confidence 99999999999888776666665554443
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-90 Score=833.85 Aligned_cols=428 Identities=39% Similarity=0.593 Sum_probs=345.9
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeC---CcCceeeecceEECCCCCchhhhhc-chHHHHHHhcC
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTG---SSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLDG 452 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~---~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~G 452 (1032)
-||+|+|||||++..|....+..||..++. ..++.+..+ ....+.|+||+||||.+.|.+||+. |.|+|..|+.|
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~-~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGI-RKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecCCC-cceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 499999999999999999999999988764 345555443 2247899999999999999999987 69999999999
Q ss_pred cceEEEeecccCCCcceEeec--------cCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCC
Q 001679 453 YNVCIFAYGQTGTGKTFTMEG--------TEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPT 524 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKTyTm~G--------~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 524 (1032)
||||||||||||+||||||+| .++++|||||++.+||..+.... .+|+|+|||+|+|||.|+|||++...
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCccc
Confidence 999999999999999999999 46789999999999999998765 58999999999999999999998655
Q ss_pred C-ccccccccC-----CCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecC-CCc-
Q 001679 525 S-KKLEIKQSS-----EGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI-SGE- 596 (1032)
Q Consensus 525 ~-~~l~i~~~~-----~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~-~~~- 596 (1032)
. +.++++.++ .|+++|.|+.++.|+++.|++.+|.+|..+|++|+|.||.+|||||+||+|+|...... .|+
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~gee 285 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEE 285 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchh
Confidence 4 777777765 68999999999999999999999999999999999999999999999999999776533 222
Q ss_pred -eeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchhhhccccCCCcceEEEE
Q 001679 597 -CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFV 675 (1032)
Q Consensus 597 -~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~LLqdsLgGnskt~mI~ 675 (1032)
...|||+||||||||.++++|+.+.|.+||+.||+||.+||+||.||..+++|||||+|||||||||||||.+||+||+
T Consensus 286 lvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIA 365 (1041)
T KOG0243|consen 286 LVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIA 365 (1041)
T ss_pred hHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcChHhHHHHHHHHHHhccccccccccccC---------hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 001679 676 QISPSEQDLSETLSSLNFATQVRGVELGPARKQID---------TSELQKMKVMLEKARQDSRSKDESLRKLEENLQNLE 746 (1032)
Q Consensus 676 ~ISP~~~~~~ETl~TL~fA~r~~~i~~~p~~~~~~---------~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le 746 (1032)
||||+..+++||++||.||.||++|+|+|..++.- ..||.+|+..|..+|.+..- ..-++.+-..+
T Consensus 366 TiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGv-----yisee~y~~~e 440 (1041)
T KOG0243|consen 366 TISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGV-----YISEERYTQEE 440 (1041)
T ss_pred EeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCce-----EechHHHHHHH
Confidence 99999999999999999999999999999988642 45677777777777654322 11112121111
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhHhhhhhh-------hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001679 747 NRAKYKDQTYKNQQEKVKELEGQVSLKSNL-------HDQSDKQASQLLERLKGREELCSTLQIKVKELENRL 812 (1032)
Q Consensus 747 ~~~~~~~~~~~~~~e~~~~le~~~~~~~~l-------~~~~e~~~~~l~~~~~~~~e~~~~l~~~l~ele~~l 812 (1032)
.+.......+++++.++..++.++...++. ...+.++.+.+...+......+..++.++.++...|
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122223334444444444444332222 223344455555555555555555555555555443
No 3
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=9.5e-84 Score=727.26 Aligned_cols=330 Identities=42% Similarity=0.658 Sum_probs=304.6
Q ss_pred cCCCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhhhc-chHHHHHHhcCc
Q 001679 375 TRGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLDGY 453 (1032)
Q Consensus 375 lkgnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~G~ 453 (1032)
.-++|+|+||+||++..|...+...+.-|.+. +..+. +......++|.||+||.|+++|++||.. +.|+|++||.||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~-~~~v~-~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GY 82 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENG-ENTVV-LETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGY 82 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCC-cceEE-EecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhccc
Confidence 34799999999999999887777666666542 12222 2222233899999999999999999988 599999999999
Q ss_pred ceEEEeecccCCCcceEeeccCC---CCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCccccc
Q 001679 454 NVCIFAYGQTGTGKTFTMEGTEQ---SRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEI 530 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm~G~~~---~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 530 (1032)
|+||||||||||||||||.|... ..|||||++++||..|........|+|+|||||||+|+|+|||+ +...++.|
T Consensus 83 NGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~--~~k~nlsv 160 (607)
T KOG0240|consen 83 NGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLD--PEKTNLSV 160 (607)
T ss_pred ceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhC--cccCCcee
Confidence 99999999999999999999765 56999999999999999999889999999999999999999999 45678999
Q ss_pred cccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceeeeeeeEeecCCC
Q 001679 531 KQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGS 610 (1032)
Q Consensus 531 ~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGS 610 (1032)
++|...+++|+|++++.|.++++++.+++.|..+|.++.|+||.+|||||+||+|+|.+.+..+.....|+|.|||||||
T Consensus 161 heDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 161 HEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred ecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcC-CCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHH
Q 001679 611 ERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATK-SNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLS 689 (1032)
Q Consensus 611 Er~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~-~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~ 689 (1032)
|+++++|+.|.-+.||.+||+||+|||+||+||+.+ ..|||||||||||||||+||||++|.+|+|+||+..+..||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 999999999999999999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccccc
Q 001679 690 SLNFATQVRGVELGPARKQ 708 (1032)
Q Consensus 690 TL~fA~r~~~i~~~p~~~~ 708 (1032)
||+|+.||+.|++.+..+.
T Consensus 321 Tl~fg~rak~ikN~v~~n~ 339 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVNL 339 (607)
T ss_pred chhhccccccccchhhhhh
Confidence 9999999999999887654
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-86 Score=767.58 Aligned_cols=352 Identities=43% Similarity=0.651 Sum_probs=312.7
Q ss_pred CCCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeC----CcCceeeecceEECCCCCchhhhhcc-hHHHHHHh
Q 001679 376 RGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTG----SSTRKTFKFDRVFTPNDGQVDVFADA-SPLVISVL 450 (1032)
Q Consensus 376 kgnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~----~~~~~~F~FD~VF~~~~tQ~~vf~~v-~plV~~~l 450 (1032)
.-+|+||+||||+...+...++..++.++... +.+.+.++ ...++.|+||.||+++++|++||..+ .|+|++||
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAH-GRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhcccccccccc-ceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 35899999999999988877777777766432 22222222 23567899999999999999999885 99999999
Q ss_pred cCcceEEEeecccCCCcceEeecc-CCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCcccc
Q 001679 451 DGYNVCIFAYGQTGTGKTFTMEGT-EQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLE 529 (1032)
Q Consensus 451 ~G~N~~IfaYGqTGSGKTyTm~G~-~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~ 529 (1032)
+|||+||||||||||||||||+|+ ++..|||||+|.+||..|+.......|.|+|||+|||||.|+|||++.+. +.+.
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~l~ 161 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KGLE 161 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CCce
Confidence 999999999999999999999999 67899999999999999999877678999999999999999999996432 6899
Q ss_pred ccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeec-CCC--ceeeeeeeEee
Q 001679 530 IKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNL-ISG--ECTKSKLWLVD 606 (1032)
Q Consensus 530 i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~-~~~--~~~~skL~lVD 606 (1032)
|++++..|+||.|++++.|.|++++..+|..|..+|++++|.||.+|||||+||+|+|+.... ..+ ....|+|+|||
T Consensus 162 lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvD 241 (574)
T KOG4280|consen 162 LREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVD 241 (574)
T ss_pred eeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeee
Confidence 999999999999999999999999999999999999999999999999999999999998332 222 24679999999
Q ss_pred cCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCCC-cccCCCCcchhhhccccCCCcceEEEEEeCCCCcChH
Q 001679 607 LAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSN-HIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLS 685 (1032)
Q Consensus 607 LAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~-hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ 685 (1032)
||||||..+++++|+|++||.+||+||++||+||.||++.+. ||||||||||+|||||||||+||+||+||||+..+++
T Consensus 242 LagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ 321 (574)
T KOG4280|consen 242 LAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYE 321 (574)
T ss_pred ccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhH
Confidence 999999999999999999999999999999999999998766 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccccccccccccCh-HHHHHHHHHHHHHHhhhh
Q 001679 686 ETLSSLNFATQVRGVELGPARKQIDT-SELQKMKVMLEKARQDSR 729 (1032)
Q Consensus 686 ETl~TL~fA~r~~~i~~~p~~~~~~~-~el~~lk~~l~~~~~e~~ 729 (1032)
||++|||||+|++.|.+.|.++.... ..+..++..+..++.++.
T Consensus 322 ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 322 ETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred HHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988765 455566666666555443
No 5
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-83 Score=753.02 Aligned_cols=349 Identities=34% Similarity=0.567 Sum_probs=313.2
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeC--CcCceeeecceEECCC-------CCchhhhhcc-hHHH
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTG--SSTRKTFKFDRVFTPN-------DGQVDVFADA-SPLV 446 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~--~~~~~~F~FD~VF~~~-------~tQ~~vf~~v-~plV 446 (1032)
.+|.|.||||||+..|....+.+||.+.+ ...+++++ +.....|+||+.||.. ++|..||+++ .|++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~g---n~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQG---NTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecC---CceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 47999999999999999988999998874 33444443 3334569999999865 4699999985 9999
Q ss_pred HHHhcCcceEEEeecccCCCcceEeeccC--CCCchhHhHHHHHHHHHHh-cCCCceeeeeeeEEEEEcCceeeccCCCC
Q 001679 447 ISVLDGYNVCIFAYGQTGTGKTFTMEGTE--QSRGVNYRTLEQLFEIAKE-RSETFTYNISVSVLEVYNEQIRDLLATSP 523 (1032)
Q Consensus 447 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~--~~~GIipral~~LF~~~~~-~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 523 (1032)
+.+++|||+||||||||||||||||+|.. +++|||||.+++||.++.. ......|+|.|||+|||||.|+|||+..+
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~ 160 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK 160 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence 99999999999999999999999999987 8999999999999999876 45678999999999999999999999545
Q ss_pred CCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecC--CC--ceee
Q 001679 524 TSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI--SG--ECTK 599 (1032)
Q Consensus 524 ~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~--~~--~~~~ 599 (1032)
....|++|+.+--|+||.+|+.+.|+|..|+..+|..|++.|++|+|+||+.|||||+||+|.+.+.... +| ...+
T Consensus 161 ~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~ 240 (1221)
T KOG0245|consen 161 SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKV 240 (1221)
T ss_pred CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceee
Confidence 6678999999999999999999999999999999999999999999999999999999999998876432 22 4578
Q ss_pred eeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhc-------CCCcccCCCCcchhhhccccCCCcceE
Q 001679 600 SKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT-------KSNHIPYRNSKLTHLLQDSLGGDSKTL 672 (1032)
Q Consensus 600 skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~-------~~~hiPyRdSKLT~LLqdsLgGnskt~ 672 (1032)
|+++|||||||||.+.+|+.|+||||+.+|||||.+||.||+||+. ++.+||||||.||+||+++|||||||.
T Consensus 241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa 320 (1221)
T KOG0245|consen 241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA 320 (1221)
T ss_pred eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence 9999999999999999999999999999999999999999999985 234899999999999999999999999
Q ss_pred EEEEeCCCCcChHhHHHHHHHHHHhccccccccccccChH-HHHHHHHHHHHHHhhh
Q 001679 673 MFVQISPSEQDLSETLSSLNFATQVRGVELGPARKQIDTS-ELQKMKVMLEKARQDS 728 (1032)
Q Consensus 673 mI~~ISP~~~~~~ETl~TL~fA~r~~~i~~~p~~~~~~~~-el~~lk~~l~~~~~e~ 728 (1032)
||++|||++-||+|||+|||||.||++|++.+.+|..... -|.+|+.++.+++.-+
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll 377 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLL 377 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876544 4677777777777543
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=9.3e-80 Score=744.64 Aligned_cols=339 Identities=39% Similarity=0.621 Sum_probs=295.9
Q ss_pred HHHHHHHHhhhc----CCCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhh
Q 001679 364 KRKELYNQIQQT----RGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVF 439 (1032)
Q Consensus 364 ~Rr~l~n~~~el----kgnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf 439 (1032)
++|+|+.+-..- .++|+|||||||+++.|. +...++.+. +..+.+ ..+.|.||+||+++++|.+||
T Consensus 81 l~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~--g~~iV~~~s---~dsl~I-----~~qtFtFD~VFdp~aTQedVF 150 (1320)
T PLN03188 81 LKRKLSAETAPENGVSDSGVKVIVRMKPLNKGEE--GEMIVQKMS---NDSLTI-----NGQTFTFDSIADPESTQEDIF 150 (1320)
T ss_pred hhccccccccccccCCCCCeEEEEEcCCCCCccC--CCeeEEEcC---CCeEEE-----eCcEEeCCeeeCCCCCHHHHH
Confidence 455666555443 579999999999998753 333333332 122222 247899999999999999999
Q ss_pred hcc-hHHHHHHhcCcceEEEeecccCCCcceEeeccC----------CCCchhHhHHHHHHHHHHhc-----CCCceeee
Q 001679 440 ADA-SPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTE----------QSRGVNYRTLEQLFEIAKER-----SETFTYNI 503 (1032)
Q Consensus 440 ~~v-~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~----------~~~GIipral~~LF~~~~~~-----~~~~~~~v 503 (1032)
+.+ .|+|+++++|||+||||||||||||||||+|+. .++|||||++++||..+... ...+.|.|
T Consensus 151 e~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V 230 (1320)
T PLN03188 151 QLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQC 230 (1320)
T ss_pred HHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEE
Confidence 985 899999999999999999999999999999963 46899999999999988642 24578999
Q ss_pred eeeEEEEEcCceeeccCCCCCCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEE
Q 001679 504 SVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCML 583 (1032)
Q Consensus 504 ~vS~~EIYnE~i~DLL~~~~~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 583 (1032)
+|||+|||||.|+|||++ ..+.+.|++++.++++|.|++++.|.|.+++..+|..|..+|++++|.+|..|||||+||
T Consensus 231 ~vSyLEIYNEkI~DLLsp--~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIF 308 (1320)
T PLN03188 231 RCSFLEIYNEQITDLLDP--SQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVF 308 (1320)
T ss_pred EEEEEeeecCcceecccc--ccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeE
Confidence 999999999999999985 345799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecC--C--CceeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhc-----CCCcccCCC
Q 001679 584 CIMVRAKNLI--S--GECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT-----KSNHIPYRN 654 (1032)
Q Consensus 584 ~i~v~~~~~~--~--~~~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~-----~~~hiPyRd 654 (1032)
+|+|...... . .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. +..||||||
T Consensus 309 tI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRD 388 (1320)
T PLN03188 309 TCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRD 388 (1320)
T ss_pred EEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCc
Confidence 9999865432 2 234579999999999999999999999999999999999999999999985 457999999
Q ss_pred CcchhhhccccCCCcceEEEEEeCCCCcChHhHHHHHHHHHHhccccccccccccChHHH
Q 001679 655 SKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGPARKQIDTSEL 714 (1032)
Q Consensus 655 SKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL~fA~r~~~i~~~p~~~~~~~~el 714 (1032)
||||+||||+||||++|+|||||||...+++||++||+||+||+.|++.|..+......+
T Consensus 389 SKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~v 448 (1320)
T PLN03188 389 SRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDV 448 (1320)
T ss_pred chHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhH
Confidence 999999999999999999999999999999999999999999999999998887644433
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.6e-79 Score=694.19 Aligned_cols=318 Identities=42% Similarity=0.650 Sum_probs=294.3
Q ss_pred CEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeC-------------CcCceeeecceEECCCCCchhhhhcc-h
Q 001679 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTG-------------SSTRKTFKFDRVFTPNDGQVDVFADA-S 443 (1032)
Q Consensus 378 nIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~-------------~~~~~~F~FD~VF~~~~tQ~~vf~~v-~ 443 (1032)
||||||||||+.+.|...+...++.+.. ....+..+ ....+.|.||+||+++++|.+||+.+ .
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~ 77 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVD---DRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTK 77 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcC---CCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHH
Confidence 7999999999999988777777776653 22222222 22357999999999999999999985 7
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCC
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSP 523 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 523 (1032)
|+|+++++|||+||||||||||||||||+|++.++|||||++++||+.++.....+.|.|++||+|||||.|+|||++.
T Consensus 78 plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~- 156 (338)
T cd01370 78 PLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS- 156 (338)
T ss_pred HHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC-
Confidence 9999999999999999999999999999999999999999999999999988778999999999999999999999853
Q ss_pred CCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecC---CCceeee
Q 001679 524 TSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI---SGECTKS 600 (1032)
Q Consensus 524 ~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~---~~~~~~s 600 (1032)
.+.+.|++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|.+|||||+||+|+|...+.. ......|
T Consensus 157 -~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s 235 (338)
T cd01370 157 -SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIG 235 (338)
T ss_pred -CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEE
Confidence 567999999999999999999999999999999999999999999999999999999999999988765 5567889
Q ss_pred eeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCC---CcccCCCCcchhhhccccCCCcceEEEEEe
Q 001679 601 KLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKS---NHIPYRNSKLTHLLQDSLGGDSKTLMFVQI 677 (1032)
Q Consensus 601 kL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~---~hiPyRdSKLT~LLqdsLgGnskt~mI~~I 677 (1032)
+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+. .||||||||||+||+|+||||++|+||+||
T Consensus 236 ~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~v 315 (338)
T cd01370 236 KLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANI 315 (338)
T ss_pred EEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEe
Confidence 99999999999999999999999999999999999999999999877 899999999999999999999999999999
Q ss_pred CCCCcChHhHHHHHHHHHHhccc
Q 001679 678 SPSEQDLSETLSSLNFATQVRGV 700 (1032)
Q Consensus 678 SP~~~~~~ETl~TL~fA~r~~~i 700 (1032)
||+..+++||++||+||+||++|
T Consensus 316 sp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 316 SPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999976
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3e-78 Score=685.20 Aligned_cols=318 Identities=42% Similarity=0.632 Sum_probs=284.8
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhhhcc-hHHHHHHhcCcce
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADA-SPLVISVLDGYNV 455 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf~~v-~plV~~~l~G~N~ 455 (1032)
+||||||||||+...|...+...++.... +..+ +... ...+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~--~~~~-~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ 76 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLS--SDTL-VWHS-HPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNG 76 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcC--CCcE-EeeC-CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 58999999999999887655555665542 1222 2222 2368999999999999999999985 8999999999999
Q ss_pred EEEeecccCCCcceEeeccCC--------CCchhHhHHHHHHHHHHhc----CCCceeeeeeeEEEEEcCceeeccCCCC
Q 001679 456 CIFAYGQTGTGKTFTMEGTEQ--------SRGVNYRTLEQLFEIAKER----SETFTYNISVSVLEVYNEQIRDLLATSP 523 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm~G~~~--------~~GIipral~~LF~~~~~~----~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 523 (1032)
||||||||||||||||+|+.. ++|||||++++||..+... ..+..|.|+|||+|||||.|+|||++
T Consensus 77 ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~-- 154 (337)
T cd01373 77 SIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP-- 154 (337)
T ss_pred eEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC--
Confidence 999999999999999999753 6799999999999988653 24568999999999999999999985
Q ss_pred CCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCC--ceeeee
Q 001679 524 TSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISG--ECTKSK 601 (1032)
Q Consensus 524 ~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~--~~~~sk 601 (1032)
....+.+++++.++++|+|++++.|.|++|++++|..|..+|++++|.+|.+|||||+||+|+|...+...+ ....|+
T Consensus 155 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~ 234 (337)
T cd01373 155 TSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSR 234 (337)
T ss_pred CCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEE
Confidence 345799999999999999999999999999999999999999999999999999999999999987664433 346799
Q ss_pred eeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhc----CCCcccCCCCcchhhhccccCCCcceEEEEEe
Q 001679 602 LWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT----KSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQI 677 (1032)
Q Consensus 602 L~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~----~~~hiPyRdSKLT~LLqdsLgGnskt~mI~~I 677 (1032)
|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+||||++|+||+||
T Consensus 235 l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~v 314 (337)
T cd01373 235 LNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANV 314 (337)
T ss_pred EEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999974 46899999999999999999999999999999
Q ss_pred CCCCcChHhHHHHHHHHHHhccc
Q 001679 678 SPSEQDLSETLSSLNFATQVRGV 700 (1032)
Q Consensus 678 SP~~~~~~ETl~TL~fA~r~~~i 700 (1032)
||+..+++||++||+||.||+.|
T Consensus 315 sP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 315 SPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999976
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.1e-76 Score=674.10 Aligned_cols=314 Identities=37% Similarity=0.598 Sum_probs=282.9
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeC------------CcCceeeecceEECCCCCchhhhhcc-h
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTG------------SSTRKTFKFDRVFTPNDGQVDVFADA-S 443 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~------------~~~~~~F~FD~VF~~~~tQ~~vf~~v-~ 443 (1032)
.+|+|||||||+.+.|...+...++.+.+ +..+.+..+ ....+.|.||+||+++++|++||+.+ .
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~ 78 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVIN--STTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTAL 78 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcC--CCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHH
Confidence 47999999999999887655555555442 222322221 23467999999999999999999885 8
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCC
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSP 523 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 523 (1032)
|+|.++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|+|||+|||||.|+|||++..
T Consensus 79 p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~ 152 (345)
T cd01368 79 PLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSP 152 (345)
T ss_pred HHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCcc
Confidence 999999999999999999999999999999999999999999999998875 99999999999999999998754
Q ss_pred C----CccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCC-----
Q 001679 524 T----SKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLIS----- 594 (1032)
Q Consensus 524 ~----~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~----- 594 (1032)
. .+.+.|+++..++++|+|++++.|.|++|++.+|..|.++|.+++|.+|.+|||||+||+|+|.......
T Consensus 153 ~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~ 232 (345)
T cd01368 153 SSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVD 232 (345)
T ss_pred ccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccc
Confidence 3 3578999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred ---CceeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhc------CCCcccCCCCcchhhhcccc
Q 001679 595 ---GECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT------KSNHIPYRNSKLTHLLQDSL 665 (1032)
Q Consensus 595 ---~~~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~------~~~hiPyRdSKLT~LLqdsL 665 (1032)
+....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|
T Consensus 233 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l 312 (345)
T cd01368 233 QDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYF 312 (345)
T ss_pred cCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhc
Confidence 445789999999999999999999999999999999999999999999986 56899999999999999999
Q ss_pred CCCcceEEEEEeCCCCcChHhHHHHHHHHHHhc
Q 001679 666 GGDSKTLMFVQISPSEQDLSETLSSLNFATQVR 698 (1032)
Q Consensus 666 gGnskt~mI~~ISP~~~~~~ETl~TL~fA~r~~ 698 (1032)
|||++|+||+||||+..+++||++||+||.+|+
T Consensus 313 ~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 313 DGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999875
No 10
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-77 Score=718.60 Aligned_cols=328 Identities=43% Similarity=0.643 Sum_probs=291.9
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEe--C---CcCceeeecceEECCCCCchhhhhc-chHHHHHHh
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLT--G---SSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVL 450 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~--~---~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l 450 (1032)
.+|.|+|||||+++.+...+........ .+....... . ......|.||+||+++++|++||+. ++|+|.+|+
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCI--NDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEec--CCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 5899999999999875433322222221 112211111 1 0114789999999999999999987 699999999
Q ss_pred cCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCccccc
Q 001679 451 DGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEI 530 (1032)
Q Consensus 451 ~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 530 (1032)
.|||++|||||||||||||||.|.+.+|||||+++.+||..+.... ++.|.|.|||+|||||.|+|||+++ ...|.|
T Consensus 84 ~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~--~~~L~i 160 (675)
T KOG0242|consen 84 EGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPD--GGDLRL 160 (675)
T ss_pred cCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCC--CCCceE
Confidence 9999999999999999999999999999999999999999999877 7899999999999999999999853 445999
Q ss_pred cccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceeeeeeeEeecCCC
Q 001679 531 KQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGS 610 (1032)
Q Consensus 531 ~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGS 610 (1032)
++|+.++++|+||++..|.|.+++..+|..|.++|+++.|.+|..|||||+||+|+|.......+ ...|+|+|||||||
T Consensus 161 rED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~~~s~L~lIDLAGS 239 (675)
T KOG0242|consen 161 REDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-SRVSKLNLIDLAGS 239 (675)
T ss_pred eEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-chhheehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998765443 26789999999999
Q ss_pred cccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcC--CCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHH
Q 001679 611 ERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATK--SNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETL 688 (1032)
Q Consensus 611 Er~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~--~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl 688 (1032)
||..+|++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||||||++||||++|+|||||+|...+|+||.
T Consensus 240 ERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~ 319 (675)
T KOG0242|consen 240 ERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETK 319 (675)
T ss_pred hhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHH
Confidence 999999999999999999999999999999999875 569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccccccC
Q 001679 689 SSLNFATQVRGVELGPARKQID 710 (1032)
Q Consensus 689 ~TL~fA~r~~~i~~~p~~~~~~ 710 (1032)
+||+||+|++.|++.+..+.+.
T Consensus 320 nTL~fAsrak~i~~~~~~n~~~ 341 (675)
T KOG0242|consen 320 NTLKFASRAKEITTKAQVNVIL 341 (675)
T ss_pred HHHHHHHHhhhcccccccceec
Confidence 9999999999999998777653
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=7e-76 Score=671.05 Aligned_cols=327 Identities=39% Similarity=0.624 Sum_probs=300.0
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCC------cCceeeecceEECCC-------CCchhhhhcc-
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS------STRKTFKFDRVFTPN-------DGQVDVFADA- 442 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~------~~~~~F~FD~VF~~~-------~tQ~~vf~~v- 442 (1032)
+||+|||||||++..|...+...++.+++ ..+.+..+. ...+.|.||+||++. ++|++||+.+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~---~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~ 77 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG---KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLG 77 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC---CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHH
Confidence 68999999999999998888888887763 344444432 356799999999999 9999999885
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCC-CceeeeeeeEEEEEcCceeeccCC
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSE-TFTYNISVSVLEVYNEQIRDLLAT 521 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~-~~~~~v~vS~~EIYnE~i~DLL~~ 521 (1032)
.|+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+..... ...|.|++||+|||||.|+|||++
T Consensus 78 ~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 78 RELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 8999999999999999999999999999999999999999999999999987654 678999999999999999999997
Q ss_pred CC-CCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecC----CCc
Q 001679 522 SP-TSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI----SGE 596 (1032)
Q Consensus 522 ~~-~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~----~~~ 596 (1032)
.+ ....+.+++++.++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|...... ...
T Consensus 158 ~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~ 237 (356)
T cd01365 158 KKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTT 237 (356)
T ss_pred CccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCc
Confidence 54 3567899999999999999999999999999999999999999999999999999999999999887654 345
Q ss_pred eeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcC--------CCcccCCCCcchhhhccccCCC
Q 001679 597 CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATK--------SNHIPYRNSKLTHLLQDSLGGD 668 (1032)
Q Consensus 597 ~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~--------~~hiPyRdSKLT~LLqdsLgGn 668 (1032)
...|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.. ..|||||+||||+||+++|||+
T Consensus 238 ~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~ 317 (356)
T cd01365 238 EKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGN 317 (356)
T ss_pred eEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCC
Confidence 67899999999999999999999999999999999999999999999853 4799999999999999999999
Q ss_pred cceEEEEEeCCCCcChHhHHHHHHHHHHhccccccccc
Q 001679 669 SKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGPAR 706 (1032)
Q Consensus 669 skt~mI~~ISP~~~~~~ETl~TL~fA~r~~~i~~~p~~ 706 (1032)
++|+||+||||...+++||++||+||++++.|++.|..
T Consensus 318 s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 318 SKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 99999999999999999999999999999999999865
No 12
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-76 Score=678.38 Aligned_cols=367 Identities=37% Similarity=0.596 Sum_probs=318.3
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeC---------CcCceeeecceEECCC-------CCchhhhh
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTG---------SSTRKTFKFDRVFTPN-------DGQVDVFA 440 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~---------~~~~~~F~FD~VF~~~-------~tQ~~vf~ 440 (1032)
.+|||.|||||++.+|.+....+++.++... .+++. ...+++|.||++|++. ++|++||.
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q----~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~ 79 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQ----TVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFK 79 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCc----eeecCCCccccccccCCCceeecccccccCCccccccccchhHHH
Confidence 6899999999999999988878888876422 22221 2457899999999875 47999998
Q ss_pred cc-hHHHHHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhc-CCCceeeeeeeEEEEEcCceeec
Q 001679 441 DA-SPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKER-SETFTYNISVSVLEVYNEQIRDL 518 (1032)
Q Consensus 441 ~v-~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~-~~~~~~~v~vS~~EIYnE~i~DL 518 (1032)
.+ ..+|+++|+|||+||||||||||||||||+|..+.+|||||.+..||..|... .....|.|.|||+|||||.+|||
T Consensus 80 ~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 80 CLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 86 77899999999999999999999999999999999999999999999998764 45678999999999999999999
Q ss_pred cCCCCCCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeec--CCCc
Q 001679 519 LATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNL--ISGE 596 (1032)
Q Consensus 519 L~~~~~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~--~~~~ 596 (1032)
|+|.+.++.+.++++.--|+||.||++..|.|++|+..+|..|+++|++++|+||..|||||+||.|.|.+.-. .+|.
T Consensus 160 LdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~ 239 (1714)
T KOG0241|consen 160 LDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGH 239 (1714)
T ss_pred hCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCc
Confidence 99988889999999999999999999999999999999999999999999999999999999999999887532 2332
Q ss_pred --eeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhc------CCCcccCCCCcchhhhccccCCC
Q 001679 597 --CTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT------KSNHIPYRNSKLTHLLQDSLGGD 668 (1032)
Q Consensus 597 --~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~------~~~hiPyRdSKLT~LLqdsLgGn 668 (1032)
...|+|.|||||||||..++|+.|+|++|+.+||+||++||.||+||+. ++++||||||.||+||+|+||||
T Consensus 240 SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGN 319 (1714)
T KOG0241|consen 240 SGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGN 319 (1714)
T ss_pred chhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCC
Confidence 3579999999999999999999999999999999999999999999985 34699999999999999999999
Q ss_pred cceEEEEEeCCCCcChHhHHHHHHHHHHhccccccccccccCh-HHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHH
Q 001679 669 SKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGPARKQIDT-SELQKMKVMLEKARQDSRS-KDESLRKLEENLQNLE 746 (1032)
Q Consensus 669 skt~mI~~ISP~~~~~~ETl~TL~fA~r~~~i~~~p~~~~~~~-~el~~lk~~l~~~~~e~~~-~~~~~~~le~~l~~le 746 (1032)
|+|+||+||||++.+|+||++|||||.||+.|+|....+.... .-+.+++.++++++..+.. ....+..+++.++.++
T Consensus 320 srTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~ese 399 (1714)
T KOG0241|consen 320 SRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESE 399 (1714)
T ss_pred ceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776543 3456666667766655544 2223444455444444
Q ss_pred H
Q 001679 747 N 747 (1032)
Q Consensus 747 ~ 747 (1032)
.
T Consensus 400 k 400 (1714)
T KOG0241|consen 400 K 400 (1714)
T ss_pred H
Confidence 3
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6.6e-75 Score=654.32 Aligned_cols=312 Identities=37% Similarity=0.575 Sum_probs=284.6
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeC--------CcCceeeecceEECCCCCchhhhhc-chHHHH
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTG--------SSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVI 447 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~--------~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~ 447 (1032)
+||+|||||||+.+.|...+...++.++.. ..+.+..+ ....+.|.||+||+++++|++||+. +.|+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~ 78 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN--PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIP 78 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC--CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHH
Confidence 589999999999998876666666666542 22332211 1125789999999999999999988 599999
Q ss_pred HHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCcc
Q 001679 448 SVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKK 527 (1032)
Q Consensus 448 ~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 527 (1032)
++++|||+||||||||||||||||+|+..++|||||++++||+.++... +.|.|++||+|||||.|+|||++ .+.
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~---~~~ 153 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND---RKR 153 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC---ccc
Confidence 9999999999999999999999999999999999999999999998765 68999999999999999999985 467
Q ss_pred ccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceeeeeeeEeec
Q 001679 528 LEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDL 607 (1032)
Q Consensus 528 l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDL 607 (1032)
+.|++++.++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|...+. ....|+|+||||
T Consensus 154 l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDL 230 (322)
T cd01367 154 LSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDL 230 (322)
T ss_pred eeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999988764 457899999999
Q ss_pred CCCcccCCCC-chhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHh
Q 001679 608 AGSERLTRTD-VQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSE 686 (1032)
Q Consensus 608 AGSEr~~~s~-~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~E 686 (1032)
|||||...++ ..|.+++|+.+||+||++|++||.+|+.+..||||||||||+||+|+||||++|+||+||||+..+++|
T Consensus 231 AGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~e 310 (322)
T cd01367 231 AGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEH 310 (322)
T ss_pred CCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHH
Confidence 9999998765 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 001679 687 TLSSLNFATQVR 698 (1032)
Q Consensus 687 Tl~TL~fA~r~~ 698 (1032)
|++||+||+|++
T Consensus 311 Tl~tL~fa~r~k 322 (322)
T cd01367 311 TLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHhhC
Confidence 999999999985
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.4e-74 Score=655.64 Aligned_cols=329 Identities=43% Similarity=0.670 Sum_probs=297.8
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeC---CcCceeeecceEECCCCCchhhhhc-chHHHHHHhcC
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTG---SSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLDG 452 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~---~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~G 452 (1032)
+||+|+|||||+...|...++..++..+.. ...+.+.++ ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~-~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGS-SKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCC-CcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999999887777788877643 233333332 2256899999999999999999988 59999999999
Q ss_pred cceEEEeecccCCCcceEeeccC-----------CCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCC
Q 001679 453 YNVCIFAYGQTGTGKTFTMEGTE-----------QSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLAT 521 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKTyTm~G~~-----------~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 521 (1032)
||+||||||||||||||||+|+. +.+|||||++.+||+.+... ...|.|++||+|||||.|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 99999999999999999999974 34899999999999999876 568999999999999999999986
Q ss_pred CC-CCcccccccc--CCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCC---C
Q 001679 522 SP-TSKKLEIKQS--SEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLIS---G 595 (1032)
Q Consensus 522 ~~-~~~~l~i~~~--~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~---~ 595 (1032)
.. ..+++.++++ ..++++|+|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|....... .
T Consensus 159 ~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~ 238 (352)
T cd01364 159 ESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEE 238 (352)
T ss_pred ccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCc
Confidence 53 3567899998 5899999999999999999999999999999999999999999999999999998765432 2
Q ss_pred ceeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchhhhccccCCCcceEEEE
Q 001679 596 ECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFV 675 (1032)
Q Consensus 596 ~~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~LLqdsLgGnskt~mI~ 675 (1032)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+++||||++|+||+
T Consensus 239 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~ 318 (352)
T cd01364 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIA 318 (352)
T ss_pred cEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 24579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcChHhHHHHHHHHHHhccccccccccc
Q 001679 676 QISPSEQDLSETLSSLNFATQVRGVELGPARKQ 708 (1032)
Q Consensus 676 ~ISP~~~~~~ETl~TL~fA~r~~~i~~~p~~~~ 708 (1032)
||||...+++||++||+||+++++|++.|..++
T Consensus 319 ~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 319 TISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999998765
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=7.2e-74 Score=647.30 Aligned_cols=319 Identities=46% Similarity=0.729 Sum_probs=297.7
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhhhcc-hHHHHHHhcCcce
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADA-SPLVISVLDGYNV 455 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf~~v-~plV~~~l~G~N~ 455 (1032)
.+|+|+|||||+.+.|...+...++.+++. ....+.++...+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~---~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~ 78 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE---DTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNG 78 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC---CEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccc
Confidence 489999999999998877777777777632 333345556678999999999999999999885 9999999999999
Q ss_pred EEEeecccCCCcceEeeccCC---CCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCccccccc
Q 001679 456 CIFAYGQTGTGKTFTMEGTEQ---SRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQ 532 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm~G~~~---~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~~ 532 (1032)
||||||||||||||||+|++. ++||+||++++||+.+........|.|++||+|||||.++|||++. ...+.+++
T Consensus 79 ~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i~~ 156 (325)
T cd01369 79 TIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS--KDNLQVHE 156 (325)
T ss_pred eEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc--cCCceEEE
Confidence 999999999999999999987 8999999999999999888778899999999999999999999853 45688999
Q ss_pred cCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceeeeeeeEeecCCCcc
Q 001679 533 SSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSER 612 (1032)
Q Consensus 533 ~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr 612 (1032)
+..++++|+|++++.|.|++|+..+|..|.++|.+++|.+|.+|||||+||+|+|...+...+....|+|+|||||||||
T Consensus 157 ~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~ 236 (325)
T cd01369 157 DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEK 236 (325)
T ss_pred cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999988877888999999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCC-CcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHHHH
Q 001679 613 LTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKS-NHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSL 691 (1032)
Q Consensus 613 ~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~-~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL 691 (1032)
..+++++|.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+++|||+|+|+||+||||...+++||++||
T Consensus 237 ~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL 316 (325)
T cd01369 237 VSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTL 316 (325)
T ss_pred ccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHH
Confidence 99999999999999999999999999999999877 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 001679 692 NFATQVRGV 700 (1032)
Q Consensus 692 ~fA~r~~~i 700 (1032)
+||+|+++|
T Consensus 317 ~~a~r~~~i 325 (325)
T cd01369 317 RFGARAKTI 325 (325)
T ss_pred HHHHHhhcC
Confidence 999999876
No 16
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.1e-73 Score=646.89 Aligned_cols=327 Identities=58% Similarity=0.896 Sum_probs=301.1
Q ss_pred CCCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhhhcchHHHHHHhcCcce
Q 001679 376 RGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNV 455 (1032)
Q Consensus 376 kgnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~ 455 (1032)
||+||||||+||+.+.|. .....++.++..++..+.+.......+.|.||+||+++++|++||+.+.|+|+++++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence 699999999999998875 2334556666443233333333367789999999999999999999999999999999999
Q ss_pred EEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCC-CceeeeeeeEEEEEcCceeeccCCCC-CCcccccccc
Q 001679 456 CIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSE-TFTYNISVSVLEVYNEQIRDLLATSP-TSKKLEIKQS 533 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~-~~~~l~i~~~ 533 (1032)
||||||+|||||||||+|+..++||+||++++||..++.... ++.|.|++||+|||||.|+|||++.+ ..+.+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 999999999999999999999999999999999999987654 78999999999999999999999643 3567999999
Q ss_pred CCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceeeeeeeEeecCCCccc
Q 001679 534 SEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERL 613 (1032)
Q Consensus 534 ~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~ 613 (1032)
+.++++|+|++++.|.|++|+..+|..|.++|.+++|.+|.+|||||+||+|+|...+...+....|+|+||||||||+.
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~ 239 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERL 239 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999888788889999999999999999
Q ss_pred CCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHHHHHH
Q 001679 614 TRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNF 693 (1032)
Q Consensus 614 ~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL~f 693 (1032)
.+.++.|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+++|||+++|+||+||||...+++||++||+|
T Consensus 240 ~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~ 319 (329)
T cd01366 240 KKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRF 319 (329)
T ss_pred ccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccc
Q 001679 694 ATQVRGVELG 703 (1032)
Q Consensus 694 A~r~~~i~~~ 703 (1032)
|+++++|+++
T Consensus 320 a~~~~~i~~~ 329 (329)
T cd01366 320 ASRVRSVELG 329 (329)
T ss_pred HHHhhcccCC
Confidence 9999999864
No 17
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-74 Score=662.16 Aligned_cols=333 Identities=37% Similarity=0.597 Sum_probs=291.4
Q ss_pred hcCCCEEEEEEecCCCcccccCCCceEEEecCC----CCCceeE--EeCCcCceeeecceEECCCCCchhhhhc-chHHH
Q 001679 374 QTRGNIRVFCRCRPLNKVEISAGCATVVDFDAA----KDGELGV--LTGSSTRKTFKFDRVFTPNDGQVDVFAD-ASPLV 446 (1032)
Q Consensus 374 elkgnIrV~~RvRP~~~~E~~~~~~~vv~~~~~----~~~~~~~--~~~~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV 446 (1032)
+.+..|.||||+||+.....+.||..|++.... +...... .+++...+.|.|.+||+|+++|.+||+. +.|+|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred hhhcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 467889999999999865556677666542210 0000011 2445567899999999999999999988 59999
Q ss_pred HHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhc-------------------------------
Q 001679 447 ISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKER------------------------------- 495 (1032)
Q Consensus 447 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~------------------------------- 495 (1032)
.+++.|.|..+|+||.|||||||||+|++.++||+||+++.||+.++..
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~ 187 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREA 187 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999866431
Q ss_pred ---------------------------------CCCceeeeeeeEEEEEcCceeeccCCCCCCc----cccccccCCCce
Q 001679 496 ---------------------------------SETFTYNISVSVLEVYNEQIRDLLATSPTSK----KLEIKQSSEGSH 538 (1032)
Q Consensus 496 ---------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~----~l~i~~~~~~~~ 538 (1032)
..+..|+|+|||+|||||.|||||.+.+... ...+++|.+|..
T Consensus 188 ~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~ 267 (809)
T KOG0247|consen 188 MLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNM 267 (809)
T ss_pred ccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCe
Confidence 1346799999999999999999999765422 256789999999
Q ss_pred ecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecC--CCceeeeeeeEeecCCCcccCCC
Q 001679 539 HVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI--SGECTKSKLWLVDLAGSERLTRT 616 (1032)
Q Consensus 539 ~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~--~~~~~~skL~lVDLAGSEr~~~s 616 (1032)
||.|+++|.|.|.+|++++|+.|.++|++++|.+|..|||||+||+|.+...... .+..+.|.|.|||||||||..++
T Consensus 268 ~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rt 347 (809)
T KOG0247|consen 268 YVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRT 347 (809)
T ss_pred eeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccc
Confidence 9999999999999999999999999999999999999999999999998776554 56778999999999999999999
Q ss_pred CchhhhHHHHHHHHHhHHhhHHHHHHHhcC-----CCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHHHH
Q 001679 617 DVQGDRLKEAQNINRSLSALGDVIYSLATK-----SNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSL 691 (1032)
Q Consensus 617 ~~~g~rlkE~~~INkSL~aLg~VI~aL~~~-----~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL 691 (1032)
++.|.||+||++||.||++||+||.+|+.+ +.+||||||||||+++.+|.|.++.+|||||+|.+.+|+|+++.|
T Consensus 348 q~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vl 427 (809)
T KOG0247|consen 348 QNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVL 427 (809)
T ss_pred cchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHH
Confidence 999999999999999999999999999853 368999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccc
Q 001679 692 NFATQVRGVELGPAR 706 (1032)
Q Consensus 692 ~fA~r~~~i~~~p~~ 706 (1032)
+||+.+..|.+.+..
T Consensus 428 kFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 428 KFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHhcccccccCcc
Confidence 999999999875443
No 18
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.1e-73 Score=647.55 Aligned_cols=321 Identities=46% Similarity=0.707 Sum_probs=292.7
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCC----cCceeeecceEECCCCCchhhhhc-chHHHHHHhc
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLD 451 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~----~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~ 451 (1032)
.||+|+|||||+++.|...++..++..++. .+.+.+..+. ...+.|.||+||+++++|.+||+. +.|+|+++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~ 79 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDEN-RGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLE 79 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCC-CCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhC
Confidence 489999999999998888777777777643 3444443332 356899999999999999999988 5999999999
Q ss_pred CcceEEEeecccCCCcceEeeccCC---CCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCccc
Q 001679 452 GYNVCIFAYGQTGTGKTFTMEGTEQ---SRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKL 528 (1032)
Q Consensus 452 G~N~~IfaYGqTGSGKTyTm~G~~~---~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l 528 (1032)
|||+||||||||||||||||+|+.. ++|||||++++||..+..... ..|.|.|||+|||||.|+|||++.. .+.+
T Consensus 80 G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~-~~~l 157 (333)
T cd01371 80 GYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ-KKKL 157 (333)
T ss_pred CCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC-CCce
Confidence 9999999999999999999999877 999999999999999877654 6899999999999999999998632 3578
Q ss_pred cccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecC---CCceeeeeeeEe
Q 001679 529 EIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI---SGECTKSKLWLV 605 (1032)
Q Consensus 529 ~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~---~~~~~~skL~lV 605 (1032)
.+++++.++++|+|++++.|.|++++..+|..|.++|.+++|.+|.+|||||+||+|+|...+.. .+....|+|+||
T Consensus 158 ~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~V 237 (333)
T cd01371 158 ELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLV 237 (333)
T ss_pred eEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987653 344568999999
Q ss_pred ecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCCC-cccCCCCcchhhhccccCCCcceEEEEEeCCCCcCh
Q 001679 606 DLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSN-HIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDL 684 (1032)
Q Consensus 606 DLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~-hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~ 684 (1032)
|||||||..+++..|.+++|+..||+||++|++||.+|+.+.. |||||+||||+||+++|||+++|+||+||+|...++
T Consensus 238 DLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~ 317 (333)
T cd01371 238 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNY 317 (333)
T ss_pred ECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccH
Confidence 9999999999999999999999999999999999999998765 999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhccc
Q 001679 685 SETLSSLNFATQVRGV 700 (1032)
Q Consensus 685 ~ETl~TL~fA~r~~~i 700 (1032)
+||++||+||+|++.|
T Consensus 318 ~eTl~TL~fa~r~r~I 333 (333)
T cd01371 318 DETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999976
No 19
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.6e-73 Score=642.54 Aligned_cols=313 Identities=37% Similarity=0.553 Sum_probs=281.0
Q ss_pred CEEEEEEecCCCcccccCCCceEEEecCCCC---CceeEEeC--CcCceeeecceEECCCCCchhhhhc-chHHHHHHhc
Q 001679 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKD---GELGVLTG--SSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLD 451 (1032)
Q Consensus 378 nIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~---~~~~~~~~--~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~ 451 (1032)
||+|||||||+.+.|... ..++......+ ..+.+..+ ....+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~--~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDS--SSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCC--CceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 799999999998887432 23333321111 12222222 2356899999999999999999988 6999999999
Q ss_pred CcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCcccccc
Q 001679 452 GYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIK 531 (1032)
Q Consensus 452 G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ 531 (1032)
|||+||||||||||||||||+|++.++|||||++++||+.++... +.|.|++||+|||||.|+|||++. ...+.|+
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i~ 154 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA--KKELPIR 154 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC--CCCceEE
Confidence 999999999999999999999999999999999999999887653 689999999999999999999853 4578899
Q ss_pred ccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceeeeeeeEeecCCCc
Q 001679 532 QSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSE 611 (1032)
Q Consensus 532 ~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSE 611 (1032)
+++.++++|+|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|...+. +....|+|+||||||||
T Consensus 155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE 232 (319)
T cd01376 155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSE 232 (319)
T ss_pred EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999988753 33678999999999999
Q ss_pred ccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHHHH
Q 001679 612 RLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSL 691 (1032)
Q Consensus 612 r~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL 691 (1032)
|..+++.+|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||++||
T Consensus 233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (319)
T cd01376 233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL 312 (319)
T ss_pred cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 001679 692 NFATQVR 698 (1032)
Q Consensus 692 ~fA~r~~ 698 (1032)
+||+|++
T Consensus 313 ~fa~r~~ 319 (319)
T cd01376 313 NFASRSK 319 (319)
T ss_pred HHHHhhC
Confidence 9999985
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=7.4e-73 Score=643.15 Aligned_cols=319 Identities=41% Similarity=0.692 Sum_probs=291.7
Q ss_pred CEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhhhcc-hHHHHHHhcCcceE
Q 001679 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADA-SPLVISVLDGYNVC 456 (1032)
Q Consensus 378 nIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf~~v-~plV~~~l~G~N~~ 456 (1032)
+|+|+||+||+.+.|...++..++.+.+.+ . .+..+ ..+.|.||+||+++++|++||+.+ .|+|+++++|||+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~--~v~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~ 76 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGE-P--QVTVG--TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNAT 76 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCC-C--EEEec--CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccc
Confidence 699999999999988877777777765432 2 22222 267899999999999999999885 89999999999999
Q ss_pred EEeecccCCCcceEeeccC------CCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCC-CCcccc
Q 001679 457 IFAYGQTGTGKTFTMEGTE------QSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSP-TSKKLE 529 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm~G~~------~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~-~~~~l~ 529 (1032)
|||||||||||||||+|+. .++|||||++++||..+........|.|.|||+|||||.|+|||.+.. ....+.
T Consensus 77 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~ 156 (341)
T cd01372 77 VLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQ 156 (341)
T ss_pred eeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCce
Confidence 9999999999999999974 579999999999999999877777999999999999999999998643 346799
Q ss_pred ccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecC----------CCceee
Q 001679 530 IKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI----------SGECTK 599 (1032)
Q Consensus 530 i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~----------~~~~~~ 599 (1032)
|++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|...+.. ......
T Consensus 157 i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~ 236 (341)
T cd01372 157 IREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLT 236 (341)
T ss_pred EEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceee
Confidence 9999999999999999999999999999999999999999999999999999999999987763 344678
Q ss_pred eeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCC---CcccCCCCcchhhhccccCCCcceEEEEE
Q 001679 600 SKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKS---NHIPYRNSKLTHLLQDSLGGDSKTLMFVQ 676 (1032)
Q Consensus 600 skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~---~hiPyRdSKLT~LLqdsLgGnskt~mI~~ 676 (1032)
|+|+|||||||||..+++++|.+++|+..||+||++|++||.+|+.++ .|||||+||||+||+++|||+++|+||+|
T Consensus 237 s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~ 316 (341)
T cd01372 237 SKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIAC 316 (341)
T ss_pred EEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999999866 79999999999999999999999999999
Q ss_pred eCCCCcChHhHHHHHHHHHHhcccc
Q 001679 677 ISPSEQDLSETLSSLNFATQVRGVE 701 (1032)
Q Consensus 677 ISP~~~~~~ETl~TL~fA~r~~~i~ 701 (1032)
|||...+++||++||+||+|+++|+
T Consensus 317 vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 317 VSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred eCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999885
No 21
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=8.1e-73 Score=637.63 Aligned_cols=315 Identities=39% Similarity=0.613 Sum_probs=288.1
Q ss_pred CEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhhhc-chHHHHHHhcCcceE
Q 001679 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLDGYNVC 456 (1032)
Q Consensus 378 nIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~G~N~~ 456 (1032)
||+|||||||+...|.. +...++.++.. ...+..++...+.|.||+||+++++|++||+. +.|+|+++++|||+|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~---~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDND---NTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCC---CEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 79999999999988763 34456666532 22333344567999999999999999999988 599999999999999
Q ss_pred EEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCccccccccCCC
Q 001679 457 IFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEG 536 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~~~~~~ 536 (1032)
|||||||||||||||+|++.++|||||++++||..+.... +..|.|++||+|||||.|+|||++. ...+.+++++.+
T Consensus 77 i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~--~~~l~i~~~~~~ 153 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPS--PQELRIREDPNK 153 (321)
T ss_pred EEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCC--CCCceEEECCCC
Confidence 9999999999999999999999999999999999997655 5689999999999999999999854 367999999999
Q ss_pred ceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCC---CceeeeeeeEeecCCCccc
Q 001679 537 SHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLIS---GECTKSKLWLVDLAGSERL 613 (1032)
Q Consensus 537 ~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~---~~~~~skL~lVDLAGSEr~ 613 (1032)
+++|+|++++.|.|++++..+|..|.++|.+++|.+|.+|||||+||+|+|....... +....|+|+|||||||||.
T Consensus 154 ~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~ 233 (321)
T cd01374 154 GVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERA 233 (321)
T ss_pred CEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999887654 5677899999999999999
Q ss_pred CCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCC--CcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHHHH
Q 001679 614 TRTDVQGDRLKEAQNINRSLSALGDVIYSLATKS--NHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSL 691 (1032)
Q Consensus 614 ~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~--~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL 691 (1032)
.+.+ .|.+++|+.+||+||++|++||.+|+.+. .|||||+||||+||+++|||+++|+||+||||...+++||++||
T Consensus 234 ~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (321)
T cd01374 234 SQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTL 312 (321)
T ss_pred ccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHH
Confidence 9998 89999999999999999999999999875 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 001679 692 NFATQVRGV 700 (1032)
Q Consensus 692 ~fA~r~~~i 700 (1032)
+||+|+++|
T Consensus 313 ~~a~r~~~i 321 (321)
T cd01374 313 KFASRAKKV 321 (321)
T ss_pred HHHHHHhcC
Confidence 999999875
No 22
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.7e-72 Score=635.00 Aligned_cols=319 Identities=45% Similarity=0.653 Sum_probs=280.6
Q ss_pred CEEEEEEecCCCcccccCC----CceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhhhcc-hHHHHHHhcC
Q 001679 378 NIRVFCRCRPLNKVEISAG----CATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFADA-SPLVISVLDG 452 (1032)
Q Consensus 378 nIrV~~RvRP~~~~E~~~~----~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf~~v-~plV~~~l~G 452 (1032)
.||||||+||+...+.... ....+.+..++++...........+.|.||+||++ ++|++||+.+ .|+|.++++|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 4899999999987443210 00011111122222333344456678999999999 9999999985 8999999999
Q ss_pred cceEEEeecccCCCcceEeeccC---CCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCC----CC
Q 001679 453 YNVCIFAYGQTGTGKTFTMEGTE---QSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSP----TS 525 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKTyTm~G~~---~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~----~~ 525 (1032)
||+||||||||||||||||+|+. .++|||||++++||..++... +..|.|++||+|||||.|+|||++.+ ..
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~ 158 (334)
T cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEALESL 158 (334)
T ss_pred CccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccccccC
Confidence 99999999999999999999976 478999999999999997754 46899999999999999999999764 24
Q ss_pred ccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEe--ecCCCceeeeeee
Q 001679 526 KKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK--NLISGECTKSKLW 603 (1032)
Q Consensus 526 ~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~--~~~~~~~~~skL~ 603 (1032)
+.+.|++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|.+|||||+||+|+|... ....+....|+|+
T Consensus 159 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~ 238 (334)
T cd01375 159 PAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLN 238 (334)
T ss_pred CceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999987 3345556789999
Q ss_pred EeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCC-CcccCCCCcchhhhccccCCCcceEEEEEeCCCCc
Q 001679 604 LVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKS-NHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQ 682 (1032)
Q Consensus 604 lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~-~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~ 682 (1032)
|||||||||..++++.|.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||+++|+||+||||...
T Consensus 239 ~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~ 318 (334)
T cd01375 239 LVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPS 318 (334)
T ss_pred EEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchh
Confidence 99999999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHhc
Q 001679 683 DLSETLSSLNFATQVR 698 (1032)
Q Consensus 683 ~~~ETl~TL~fA~r~~ 698 (1032)
+++||++||+||+|++
T Consensus 319 ~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 319 NLDETLSTLRFAQRVA 334 (334)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 9999999999999984
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.6e-69 Score=614.38 Aligned_cols=327 Identities=53% Similarity=0.775 Sum_probs=301.6
Q ss_pred CEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEe--CCcCceeeecceEECCCCCchhhhhcc-hHHHHHHhcCcc
Q 001679 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLT--GSSTRKTFKFDRVFTPNDGQVDVFADA-SPLVISVLDGYN 454 (1032)
Q Consensus 378 nIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~--~~~~~~~F~FD~VF~~~~tQ~~vf~~v-~plV~~~l~G~N 454 (1032)
+|+|+|||||+...|...+...++.+.......+.+.. .....+.|.||+||+++++|.+||+.+ .|+|+++++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 69999999999999887777788887754322333322 234568999999999999999999885 899999999999
Q ss_pred eEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCccccccccC
Q 001679 455 VCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSS 534 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~~~~ 534 (1032)
+||||||+|||||||||+|+++++||+||++++||..+.....+..|.|++||+|||||.|+|||++. .+.+.|++++
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--~~~l~i~~~~ 158 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--PKKLEIREDK 158 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--CCCcEEEECC
Confidence 99999999999999999999999999999999999999887767899999999999999999999853 5678999999
Q ss_pred CCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEe--ecCCCceeeeeeeEeecCCCcc
Q 001679 535 EGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAK--NLISGECTKSKLWLVDLAGSER 612 (1032)
Q Consensus 535 ~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~--~~~~~~~~~skL~lVDLAGSEr 612 (1032)
.++++++|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+|||||||||
T Consensus 159 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999966 5566677899999999999999
Q ss_pred cCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhc--CCCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHHH
Q 001679 613 LTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT--KSNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSS 690 (1032)
Q Consensus 613 ~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~--~~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~T 690 (1032)
..+.++.|.+++|+..||+||.+|++||.+|+. +..|||||+||||+||+++|||+++|+||+||||...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 999999999999999999999999999999998 677999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccc
Q 001679 691 LNFATQVRGVELGPAR 706 (1032)
Q Consensus 691 L~fA~r~~~i~~~p~~ 706 (1032)
|+||+++++|++.|.+
T Consensus 319 L~~a~~~~~i~~~p~~ 334 (335)
T smart00129 319 LRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHhhcccCCCc
Confidence 9999999999999965
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.4e-68 Score=600.96 Aligned_cols=318 Identities=49% Similarity=0.753 Sum_probs=289.7
Q ss_pred CEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCC----cCceeeecceEECCCCCchhhhhcc-hHHHHHHhcC
Q 001679 378 NIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS----STRKTFKFDRVFTPNDGQVDVFADA-SPLVISVLDG 452 (1032)
Q Consensus 378 nIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~----~~~~~F~FD~VF~~~~tQ~~vf~~v-~plV~~~l~G 452 (1032)
+|+||||+||+...| ..+...++.+++. ..+.+..+. ...+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN--KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC--CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999998776 2344566666532 233333321 3468999999999999999999885 7999999999
Q ss_pred cceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCC-CceeeeeeeEEEEEcCceeeccCCCCCCcccccc
Q 001679 453 YNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSE-TFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIK 531 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ 531 (1032)
+|+||||||+|||||||||+|+..++|||||++++||..+..... ...|.|++||+|||+|.|+|||++.+....+.++
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~ 157 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLR 157 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEE
Confidence 999999999999999999999999999999999999999987653 5689999999999999999999965446789999
Q ss_pred ccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCc--eeeeeeeEeecCC
Q 001679 532 QSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGE--CTKSKLWLVDLAG 609 (1032)
Q Consensus 532 ~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~--~~~skL~lVDLAG 609 (1032)
+++.+++++.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|+|...+..... ...|+|+||||||
T Consensus 158 ~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaG 237 (328)
T cd00106 158 EDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAG 237 (328)
T ss_pred EcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999998876654 7899999999999
Q ss_pred CcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCC--CcccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhH
Q 001679 610 SERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKS--NHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSET 687 (1032)
Q Consensus 610 SEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~--~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ET 687 (1032)
||+..+++..|.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||||...+++||
T Consensus 238 se~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eT 317 (328)
T cd00106 238 SERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDET 317 (328)
T ss_pred CCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHH
Confidence 99999999999999999999999999999999999888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 001679 688 LSSLNFATQVR 698 (1032)
Q Consensus 688 l~TL~fA~r~~ 698 (1032)
++||+||+|++
T Consensus 318 l~tL~~a~r~~ 328 (328)
T cd00106 318 LSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.7e-68 Score=605.93 Aligned_cols=316 Identities=47% Similarity=0.737 Sum_probs=282.3
Q ss_pred EecCCCcccccCCCceEEEecCCCCCceeE----EeCCcCceeeecceEECCCCCchhhhhc-chHHHHHHhcCcceEEE
Q 001679 384 RCRPLNKVEISAGCATVVDFDAAKDGELGV----LTGSSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLDGYNVCIF 458 (1032)
Q Consensus 384 RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~----~~~~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~G~N~~If 458 (1032)
||||+++.|...+...++..... ...... .......+.|.||+||+++++|++||+. +.|+|+++++|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQ-DSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETT-ETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCC-ccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 99999999988776665554321 111111 1224456899999999999999999988 59999999999999999
Q ss_pred eecccCCCcceEeecc--CCCCchhHhHHHHHHHHHHhcCCC--ceeeeeeeEEEEEcCceeeccCCCC--CCccccccc
Q 001679 459 AYGQTGTGKTFTMEGT--EQSRGVNYRTLEQLFEIAKERSET--FTYNISVSVLEVYNEQIRDLLATSP--TSKKLEIKQ 532 (1032)
Q Consensus 459 aYGqTGSGKTyTm~G~--~~~~GIipral~~LF~~~~~~~~~--~~~~v~vS~~EIYnE~i~DLL~~~~--~~~~l~i~~ 532 (1032)
|||+|||||||||+|+ ..++||+||++++||..+...... +.|.|+|||+|||||.|+|||++.. ....+.|++
T Consensus 80 ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~ 159 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRE 159 (335)
T ss_dssp EEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEE
T ss_pred eeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceee
Confidence 9999999999999999 889999999999999999887654 7999999999999999999999763 346799999
Q ss_pred cCCCc-eecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCc----eeeeeeeEeec
Q 001679 533 SSEGS-HHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGE----CTKSKLWLVDL 607 (1032)
Q Consensus 533 ~~~~~-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~----~~~skL~lVDL 607 (1032)
++..+ ++|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|...+...+. ...|+|+||||
T Consensus 160 ~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDL 239 (335)
T PF00225_consen 160 DSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDL 239 (335)
T ss_dssp ETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEE
T ss_pred ccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeec
Confidence 99865 99999999999999999999999999999999999999999999999999998876554 47899999999
Q ss_pred CCCcccCCCCch-hhhHHHHHHHHHhHHhhHHHHHHHhcC--CCcccCCCCcchhhhccccCCCcceEEEEEeCCCCcCh
Q 001679 608 AGSERLTRTDVQ-GDRLKEAQNINRSLSALGDVIYSLATK--SNHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDL 684 (1032)
Q Consensus 608 AGSEr~~~s~~~-g~rlkE~~~INkSL~aLg~VI~aL~~~--~~hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~ 684 (1032)
|||||..+.++. |.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+|||+++|+||+||||...++
T Consensus 240 aGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~ 319 (335)
T PF00225_consen 240 AGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDY 319 (335)
T ss_dssp EESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGH
T ss_pred ccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccH
Confidence 999999998874 889999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhccc
Q 001679 685 SETLSSLNFATQVRGV 700 (1032)
Q Consensus 685 ~ETl~TL~fA~r~~~i 700 (1032)
+||++||+||+++++|
T Consensus 320 ~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 320 EETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999976
No 26
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-66 Score=610.93 Aligned_cols=340 Identities=38% Similarity=0.617 Sum_probs=301.0
Q ss_pred ecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeecceEECCCCCchhhhhc-chHHHHHHhcCcceEEEeeccc
Q 001679 385 CRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLDGYNVCIFAYGQT 463 (1032)
Q Consensus 385 vRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~G~N~~IfaYGqT 463 (1032)
|||+...|...||..|+.+.+ +...+..+ ....|+||+||.+.+.|.++|+. |.|+++.+++|||++++|||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~---~~pqv~ig--~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQt 75 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSP---RTPQVAIG--KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQT 75 (913)
T ss_pred CCCccchHHHhcchhhcccCC---CCCceeec--CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeeccc
Confidence 699999999999998888542 33333333 45789999999999999999988 5999999999999999999999
Q ss_pred CCCcceEeecc----CCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeeccCCCCCCccccccccCCCcee
Q 001679 464 GTGKTFTMEGT----EQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHH 539 (1032)
Q Consensus 464 GSGKTyTm~G~----~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~~~~~~~~~ 539 (1032)
||||||||.+. ..+.|||||++.+||..+..... ..|.|.|||+|||++.|+|||.+......+.+++ +.|++.
T Consensus 76 gsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it 153 (913)
T KOG0244|consen 76 GSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEIT 153 (913)
T ss_pred CCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceE
Confidence 99999999886 23459999999999999987654 7899999999999999999998544444566777 788899
Q ss_pred cCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecC-CCceeeeeeeEeecCCCcccCCCCc
Q 001679 540 VPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLI-SGECTKSKLWLVDLAGSERLTRTDV 618 (1032)
Q Consensus 540 v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~-~~~~~~skL~lVDLAGSEr~~~s~~ 618 (1032)
+.|++++.|.+..++...|..|.-.|++++|+||..|||||+||++.+...... ......++|+|||||||||.++|++
T Consensus 154 ~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a 233 (913)
T KOG0244|consen 154 IRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKA 233 (913)
T ss_pred EEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccccccc
Confidence 999999999999999999999999999999999999999999999998764333 2334679999999999999999999
Q ss_pred hhhhHHHHHHHHHhHHhhHHHHHHHhcCCC--cccCCCCcchhhhccccCCCcceEEEEEeCCCCcChHhHHHHHHHHHH
Q 001679 619 QGDRLKEAQNINRSLSALGDVIYSLATKSN--HIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQ 696 (1032)
Q Consensus 619 ~g~rlkE~~~INkSL~aLg~VI~aL~~~~~--hiPyRdSKLT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL~fA~r 696 (1032)
+|+|++|+.+||.+|++||+||+||..... |||||+|||||||||+||||+.|+||+||||+..++.||++||+||.|
T Consensus 234 ~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~R 313 (913)
T KOG0244|consen 234 EGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADR 313 (913)
T ss_pred chhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhH
Confidence 999999999999999999999999987554 999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccc-ChHHHHHHHHHHHHHHhhhhhh
Q 001679 697 VRGVELGPARKQI-DTSELQKMKVMLEKARQDSRSK 731 (1032)
Q Consensus 697 ~~~i~~~p~~~~~-~~~el~~lk~~l~~~~~e~~~~ 731 (1032)
++.|++.|..++. ...++..++.+++.++.++-..
T Consensus 314 ak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 314 AKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred HHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999883 2457788888888777665443
No 27
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-64 Score=569.88 Aligned_cols=319 Identities=32% Similarity=0.517 Sum_probs=282.2
Q ss_pred CCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCC---------cCceeeecceEECCCCCchhhhhc-chHHH
Q 001679 377 GNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGS---------STRKTFKFDRVFTPNDGQVDVFAD-ASPLV 446 (1032)
Q Consensus 377 gnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~---------~~~~~F~FD~VF~~~~tQ~~vf~~-v~plV 446 (1032)
-.|.|+||-||++..|.......|++++.. ...+++-+ -..+.|.||++|+..++++.||.- +.|||
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~---~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSK---NVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEecccc---ceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 369999999999999987777777777531 22222221 134689999999999999999976 69999
Q ss_pred HHHhcCcceEEEeecccCCCcceEeeccCC------CCchhHhHHHHHHHHHHh-cCCCceeeeeeeEEEEEcCceeecc
Q 001679 447 ISVLDGYNVCIFAYGQTGTGKTFTMEGTEQ------SRGVNYRTLEQLFEIAKE-RSETFTYNISVSVLEVYNEQIRDLL 519 (1032)
Q Consensus 447 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~------~~GIipral~~LF~~~~~-~~~~~~~~v~vS~~EIYnE~i~DLL 519 (1032)
..+++|--+|+||||||||||||||-|+-. ..||...+.+++|..+.. .-....+.|+|||||||+.++||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 999999999999999999999999988642 469999999999998876 2344678999999999999999999
Q ss_pred CCCCCCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceee
Q 001679 520 ATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTK 599 (1032)
Q Consensus 520 ~~~~~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 599 (1032)
+. .++|.+.+|.+..++|.||++..|.+.++++.+|..|+..|+++.|..|++|||||+||+|.+.... +....
T Consensus 365 ~~---k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~h 438 (676)
T KOG0246|consen 365 ND---KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLH 438 (676)
T ss_pred cc---ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeE
Confidence 74 5789999999999999999999999999999999999999999999999999999999999997542 24678
Q ss_pred eeeeEeecCCCcccCCCC-chhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchhhhccccCC-CcceEEEEEe
Q 001679 600 SKLWLVDLAGSERLTRTD-VQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGG-DSKTLMFVQI 677 (1032)
Q Consensus 600 skL~lVDLAGSEr~~~s~-~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~LLqdsLgG-nskt~mI~~I 677 (1032)
|++.||||||+||...+. +..+.-.|+..|||||+||..||.||...+.|+|||.||||.+|+|||-| ||+|+||+||
T Consensus 439 GKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~I 518 (676)
T KOG0246|consen 439 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATI 518 (676)
T ss_pred eEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEe
Confidence 999999999999976554 55566779999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCcChHhHHHHHHHHHHhccccccc
Q 001679 678 SPSEQDLSETLSSLNFATQVRGVELGP 704 (1032)
Q Consensus 678 SP~~~~~~ETl~TL~fA~r~~~i~~~p 704 (1032)
||...+.+.||+|||||.||+......
T Consensus 519 SPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 519 SPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred CCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999876543
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-59 Score=562.19 Aligned_cols=304 Identities=44% Similarity=0.678 Sum_probs=280.3
Q ss_pred ceeeecceEECCCCCchhhhhc-chHHHHHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCC
Q 001679 420 RKTFKFDRVFTPNDGQVDVFAD-ASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSET 498 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~-v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~ 498 (1032)
...|.||+||+|.++|++||+. +.|+++++++|||+||||||||||||||||.|....+||||+++..||..+.....+
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 5679999999999999999987 699999999999999999999999999999999999999999999999999987767
Q ss_pred ceeeeeeeEEEEEcCceeeccCCCCCCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCC
Q 001679 499 FTYNISVSVLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSR 578 (1032)
Q Consensus 499 ~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 578 (1032)
..|.|.+||+|||||.++|||.+... .+.++++..++++|.|+++..+.+.++++.+|..|..+|+++.|.+|..|||
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~~--~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssR 212 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNEE--SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSR 212 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCccc--cccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhcccccc
Confidence 78999999999999999999986433 2678899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEeecCCCceeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhc--CCCcccCCCCc
Q 001679 579 SHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLAT--KSNHIPYRNSK 656 (1032)
Q Consensus 579 SH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~--~~~hiPyRdSK 656 (1032)
||+||++.+...+...+....++|+|||||||||...++..+.|++|+..||+||.+||+||.+|.. +..|||||+||
T Consensus 213 shsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyResk 292 (568)
T COG5059 213 SHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESK 292 (568)
T ss_pred ceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhH
Confidence 9999999999988877777778999999999999999999999999999999999999999999997 78899999999
Q ss_pred chhhhccccCCCcceEEEEEeCCCCcChHhHHHHHHHHHHhccccccccccc--cChHHHHHHHHHHHHHH
Q 001679 657 LTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVELGPARKQ--IDTSELQKMKVMLEKAR 725 (1032)
Q Consensus 657 LT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL~fA~r~~~i~~~p~~~~--~~~~el~~lk~~l~~~~ 725 (1032)
||||||++|||+++|+|||||+|...+++||++||+||.|+++|++.+..+. ....++..++..+...+
T Consensus 293 LTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~ 363 (568)
T COG5059 293 LTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDR 363 (568)
T ss_pred HHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999888774 22334444444444433
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.5e-50 Score=417.62 Aligned_cols=176 Identities=53% Similarity=0.845 Sum_probs=169.2
Q ss_pred hhhcchHHHHHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceee
Q 001679 438 VFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRD 517 (1032)
Q Consensus 438 vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~D 517 (1032)
||+.+.|+|..+++|||+||||||||||||||||+|++.++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99987799999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCC---
Q 001679 518 LLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLIS--- 594 (1032)
Q Consensus 518 LL~~~~~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--- 594 (1032)
++.++..|..+|.+++|.+|..|||||+||+|++...+...
T Consensus 58 ------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~ 101 (186)
T cd01363 58 ------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASAT 101 (186)
T ss_pred ------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCc
Confidence 78899999999999999999999999999999999877654
Q ss_pred CceeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchhhhccccCCCcceEEE
Q 001679 595 GECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTHLLQDSLGGDSKTLMF 674 (1032)
Q Consensus 595 ~~~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~LLqdsLgGnskt~mI 674 (1032)
+....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+||||++|+||
T Consensus 102 ~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i 181 (186)
T cd01363 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMV 181 (186)
T ss_pred cceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEE
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC
Q 001679 675 VQISP 679 (1032)
Q Consensus 675 ~~ISP 679 (1032)
+||||
T Consensus 182 ~~vsP 186 (186)
T cd01363 182 ACISP 186 (186)
T ss_pred EEeCc
Confidence 99999
No 30
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.96 E-value=5.7e-29 Score=257.18 Aligned_cols=144 Identities=33% Similarity=0.578 Sum_probs=105.6
Q ss_pred eEEEEeeCCCCccccCCcceeecCCCCCCCcc-c-c---------cccccccCCCccccccccccc--ceeEEEecCCCc
Q 001679 37 FVLFVNAGGEASDEVDCSMKFLGDTYFEGGNV-L-R---------TNEHICDAGDYPFIYQSARFG--NFCYRFNDIPPG 103 (1032)
Q Consensus 37 ~~~~INcGg~~~~~~~~g~~w~~D~~f~gg~~-~-~---------~~~~~~~~~~~p~lYqTaR~g--~~sY~fp~v~~G 103 (1032)
++++|||||+.+ ++..|..|.+|.+|.+|.. + . .......++.++.||+|+|+| +|+|.||++++|
T Consensus 1 ~~~~IN~Gg~~~-~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~ip~~~~G 79 (174)
T PF11721_consen 1 VVLRINAGGPAY-TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDIPVVPNG 79 (174)
T ss_dssp EEEEEEETSSSE-EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SSSEEEEEE--S-E
T ss_pred CEEEEECCCCcc-cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCCceEEEEecCCCc
Confidence 589999999999 7777899999999988776 1 1 111222234457899999998 799999989999
Q ss_pred eEEEEEEEeecccCC----CCCcceEEEEEECCEEEecccccccccCCCC-CeEEEEEEEEEcCCceEEEEee-------
Q 001679 104 HYYVDLHFAEIINTN----GPKGMRVFNVFVQEEKVVSDFDIFSIVGANK-PLQLVDIGVSVKEEGTVVVRFE------- 171 (1032)
Q Consensus 104 ~Y~VrLhFaEi~~~~----~~~G~RvFdV~Ing~~vl~~fDI~~~aG~~~-a~~~~~f~V~v~~dg~L~I~f~------- 171 (1032)
.|.|+|||||+++.. ..+|+|||||+|||++|+++|||++.+|+.. +++...+.|.|+ ||.|+|.|.
T Consensus 80 ~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~-dg~L~i~f~~~~~~~~ 158 (174)
T PF11721_consen 80 TYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVT-DGTLNIQFVWAGKGTL 158 (174)
T ss_dssp EEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEE-TTEEETTEEEE--SEE
T ss_pred EEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEe-CCcEEEEEEecCCCcE
Confidence 999999999999994 3499999999999999999999999999987 566655589996 899999998
Q ss_pred -----ccCCCceeEEE
Q 001679 172 -----GISGSPAVSGI 182 (1032)
Q Consensus 172 -----~~~g~p~InaI 182 (1032)
+..|+|+||||
T Consensus 159 ~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 159 CIPFIGSYGNPLISAI 174 (174)
T ss_dssp EEEEESSSSSSSEEEE
T ss_pred EeeccccCCCcEEeeC
Confidence 88899999998
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.79 E-value=8.3e-19 Score=214.72 Aligned_cols=155 Identities=23% Similarity=0.290 Sum_probs=119.4
Q ss_pred CceEEEEeeCCCCcc------ccCC--cceeecCCCCCCCc--ccccccccccC-----CCccccccccccc-----cee
Q 001679 35 GEFVLFVNAGGEASD------EVDC--SMKFLGDTYFEGGN--VLRTNEHICDA-----GDYPFIYQSARFG-----NFC 94 (1032)
Q Consensus 35 ~~~~~~INcGg~~~~------~~~~--g~~w~~D~~f~gg~--~~~~~~~~~~~-----~~~p~lYqTaR~g-----~~s 94 (1032)
...++||||||+... +|.. +|.|.+|..|..+. ..++...+..+ ..|..||+|||.+ +++
T Consensus 190 L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~~lt 269 (623)
T PLN03150 190 LRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDTQPDLS 269 (623)
T ss_pred EEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCCCCceE
Confidence 566889999997542 1222 68899987765332 22222223211 1234599999882 599
Q ss_pred EEEecCCCceEEEEEEEeecccCCCCCcceEEEEEECCEEEecccccccccCCCCCeEEEEEEEEEcCCceEEEEeeccC
Q 001679 95 YRFNDIPPGHYYVDLHFAEIINTNGPKGMRVFNVFVQEEKVVSDFDIFSIVGANKPLQLVDIGVSVKEEGTVVVRFEGIS 174 (1032)
Q Consensus 95 Y~fp~v~~G~Y~VrLhFaEi~~~~~~~G~RvFdV~Ing~~vl~~fDI~~~aG~~~a~~~~~f~V~v~~dg~L~I~f~~~~ 174 (1032)
|.||+.++|.|+|+|||||+.......++|+|||+|||+.++++|||...+|+...+++++|.+.++ +|.|+|+|.|..
T Consensus 270 y~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~-~g~l~isl~p~~ 348 (623)
T PLN03150 270 YTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVS-GRTLTIVLQPKK 348 (623)
T ss_pred EEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeec-CCeEEEEEeeCC
Confidence 9998557789999999999986544669999999999999999999998888777677778999887 589999999987
Q ss_pred CC-ceeEEEEEeecCCC
Q 001679 175 GS-PAVSGICIRRASKV 190 (1032)
Q Consensus 175 g~-p~InaIEI~k~~~~ 190 (1032)
+. |+||||||+++.+.
T Consensus 349 ~s~pilNaiEI~~~~~~ 365 (623)
T PLN03150 349 GTHAIINAIEVFEIITA 365 (623)
T ss_pred CCcceeeeeeeeecccc
Confidence 75 99999999999875
No 32
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.61 E-value=3.1e-15 Score=171.10 Aligned_cols=153 Identities=24% Similarity=0.312 Sum_probs=107.1
Q ss_pred CCCceEEEEeeCCCC--c--cccCCcceeecCCCCCCCcccccccccc------cCCCcccccccccc----c---ceeE
Q 001679 33 CTGEFVLFVNAGGEA--S--DEVDCSMKFLGDTYFEGGNVLRTNEHIC------DAGDYPFIYQSARF----G---NFCY 95 (1032)
Q Consensus 33 ~~~~~~~~INcGg~~--~--~~~~~g~~w~~D~~f~gg~~~~~~~~~~------~~~~~p~lYqTaR~----g---~~sY 95 (1032)
.....++|+||||.. + ..|..+|.|.+.....+...+.++..+. ....|..||+|||. . +++|
T Consensus 175 ~~L~~~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw 254 (347)
T PF12819_consen 175 QALETVYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTW 254 (347)
T ss_pred ceeEEEEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEe
Confidence 356789999999987 4 3555788999431112222222222121 22334569999998 1 5788
Q ss_pred EEecCCCceEEEEEEEeecccCCCCCcceEEEEEECCEEEecccccccccCCCCCeEEEEEEEEEcCCceEEEEeeccCC
Q 001679 96 RFNDIPPGHYYVDLHFAEIINTNGPKGMRVFNVFVQEEKVVSDFDIFSIVGANKPLQLVDIGVSVKEEGTVVVRFEGISG 175 (1032)
Q Consensus 96 ~fp~v~~G~Y~VrLhFaEi~~~~~~~G~RvFdV~Ing~~vl~~fDI~~~aG~~~a~~~~~f~V~v~~dg~L~I~f~~~~g 175 (1032)
.| +.++-.|+|+||||||.......++|+|||+|||+.+.++++.. ..+....+.+.+|.+.+.+.+.++|++.+..+
T Consensus 255 ~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~ 332 (347)
T PF12819_consen 255 SF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPP-YLGADTVPYYSDYVVNVPDSGFLNISLGPTPD 332 (347)
T ss_pred cc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcc-cccCcceEeecceEEEecCCCEEEEEEEeCCC
Confidence 77 33444799999999999864356789999999999988744442 23444455666888999877889999987765
Q ss_pred C---ceeEEEEEeec
Q 001679 176 S---PAVSGICIRRA 187 (1032)
Q Consensus 176 ~---p~InaIEI~k~ 187 (1032)
+ |+|||+|||++
T Consensus 333 S~lppiLNalEIy~v 347 (347)
T PF12819_consen 333 STLPPILNALEIYKV 347 (347)
T ss_pred CCcCceeEeeeeEeC
Confidence 4 99999999985
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=3.4e-14 Score=174.28 Aligned_cols=145 Identities=19% Similarity=0.330 Sum_probs=108.6
Q ss_pred CCceEEEEeeCCCCcc-ccCCcceeecCCCCCCCcccccccccccCCCccccccccccc------ceeEEEecCCCceEE
Q 001679 34 TGEFVLFVNAGGEASD-EVDCSMKFLGDTYFEGGNVLRTNEHICDAGDYPFIYQSARFG------NFCYRFNDIPPGHYY 106 (1032)
Q Consensus 34 ~~~~~~~INcGg~~~~-~~~~g~~w~~D~~f~gg~~~~~~~~~~~~~~~p~lYqTaR~g------~~sY~fp~v~~G~Y~ 106 (1032)
+.+..++||||+.... .|.+|+.|.+|..|.+|.......+ ...+..|+|+|+. .++|+||..++|.|+
T Consensus 21 ~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~----~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g~yl 96 (623)
T PLN03150 21 PEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRP----SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYS 96 (623)
T ss_pred CCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCc----ccccchhhccccCCcccccccceEeeecCCCcEE
Confidence 4555689999998754 4467999999987765543322211 1123469999993 469999988889999
Q ss_pred EEEEEeecccCCCCCcceEEEEEECC---EEEecccccccccCCCCCeEEEEEEEEEcCCceEEEEeeccC-CCceeEEE
Q 001679 107 VDLHFAEIINTNGPKGMRVFNVFVQE---EKVVSDFDIFSIVGANKPLQLVDIGVSVKEEGTVVVRFEGIS-GSPAVSGI 182 (1032)
Q Consensus 107 VrLhFaEi~~~~~~~G~RvFdV~Ing---~~vl~~fDI~~~aG~~~a~~~~~f~V~v~~dg~L~I~f~~~~-g~p~InaI 182 (1032)
|||||....+.... ...+|||+++| .+|+.+|+.. ...++++|.+.++ ++.|.|.|.+.. |.||||||
T Consensus 97 VRl~F~~~~y~~~~-~~~~Fdv~~~~~~~~tv~~~~~~~------~~~v~~E~i~~~~-~~~l~vcf~~~~~~~pFIs~i 168 (623)
T PLN03150 97 VRVFFGLVAEPNFD-SEPLFDVSVEGTQISSLKSGWSSH------DEQVFAEALVFLT-DGSASICFHSTGHGDPAILSI 168 (623)
T ss_pred EEEEeecCCcCCCC-CCCceEEEECcEEEEEEecCcccC------CCcEEEEEEEEec-CCcEEEEEecCCCCCCceeEE
Confidence 99999998766433 56799999999 5666666531 1245568888887 778999998754 67999999
Q ss_pred EEeecCCC
Q 001679 183 CIRRASKV 190 (1032)
Q Consensus 183 EI~k~~~~ 190 (1032)
||+++|..
T Consensus 169 Ev~~l~~~ 176 (623)
T PLN03150 169 EILQVDDK 176 (623)
T ss_pred EEEEcCcc
Confidence 99999873
No 34
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.32 E-value=1.4e-11 Score=141.19 Aligned_cols=146 Identities=18% Similarity=0.247 Sum_probs=100.7
Q ss_pred EeeCCCCccc----cCCcceeecCCCCCCCcc-ccccc-ccccCCCccccccccccc----ceeEEEecCCC--ceEEEE
Q 001679 41 VNAGGEASDE----VDCSMKFLGDTYFEGGNV-LRTNE-HICDAGDYPFIYQSARFG----NFCYRFNDIPP--GHYYVD 108 (1032)
Q Consensus 41 INcGg~~~~~----~~~g~~w~~D~~f~gg~~-~~~~~-~~~~~~~~p~lYqTaR~g----~~sY~fp~v~~--G~Y~Vr 108 (1032)
||||++...+ +..|+.|.+|..|..++. ..... ........+.+|+|+|.. ..+|+||..++ |.|+||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~g~r~cY~l~~~~~~~~~yliR 80 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPEGSRNCYTLPVTPPGGGKYLIR 80 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCCCCccEEEeeccCCCCceEEEE
Confidence 7999886533 345899999987755332 22211 111123345689999993 38999997643 389999
Q ss_pred EEEeecccCCCC----CcceEEEEEECCEEEecccccccccCCCCCeEEEEEEEEEcCCceEEEEeeccC-CC-ceeEEE
Q 001679 109 LHFAEIINTNGP----KGMRVFNVFVQEEKVVSDFDIFSIVGANKPLQLVDIGVSVKEEGTVVVRFEGIS-GS-PAVSGI 182 (1032)
Q Consensus 109 LhFaEi~~~~~~----~G~RvFdV~Ing~~vl~~fDI~~~aG~~~a~~~~~f~V~v~~dg~L~I~f~~~~-g~-p~InaI 182 (1032)
|||.-..+.... ...-.||+++++... ..+++.. ....+++++|.+.+..++.|.|.|.+.. |. ||||||
T Consensus 81 l~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~-~tV~~~~---~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsai 156 (347)
T PF12819_consen 81 LHFYYGNYDGLNFSVSSSPPTFDLLLGFNFW-STVNLSN---SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAI 156 (347)
T ss_pred EEeccccccccccccccCCcceEEEECCcee-EEEEecC---CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEE
Confidence 999987666211 124569998887763 2233221 1124567799999987789999999876 77 999999
Q ss_pred EEeecCCC
Q 001679 183 CIRRASKV 190 (1032)
Q Consensus 183 EI~k~~~~ 190 (1032)
||+++|..
T Consensus 157 El~~lp~~ 164 (347)
T PF12819_consen 157 ELRPLPDS 164 (347)
T ss_pred EEEECCcc
Confidence 99999885
No 35
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=99.29 E-value=1.7e-12 Score=138.38 Aligned_cols=161 Identities=24% Similarity=0.305 Sum_probs=118.0
Q ss_pred CCCccCCCCCceEEEEeeCCCCccccCCcceeecCCCCCCCcc--cccccccccC--CCccccccccccc--ceeEEEec
Q 001679 26 CGFIRSYCTGEFVLFVNAGGEASDEVDCSMKFLGDTYFEGGNV--LRTNEHICDA--GDYPFIYQSARFG--NFCYRFND 99 (1032)
Q Consensus 26 ~~~~~~~~~~~~~~~INcGg~~~~~~~~g~~w~~D~~f~gg~~--~~~~~~~~~~--~~~p~lYqTaR~g--~~sY~fp~ 99 (1032)
.|....+|+..++++|||||+.- .+..|..|.+|..-.-|-. +.--..+... ..+-.+|+|+||. .|.|..|.
T Consensus 49 ~ga~Taa~~~svI~aVncGgdaa-vd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~neetFgyd~pi 127 (355)
T KOG3593|consen 49 RGAPTAALPSSVIPAVNCGGDAA-VDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEETFGYDVPI 127 (355)
T ss_pred ccCccccCchhhhheeccCChhh-hcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchhhhcccccc
Confidence 45556778999999999999987 5667888999865432221 1111122211 2234599999994 68899987
Q ss_pred CCCceEEEEEEEeecccCCCCCcceEEEEEEC-CEEEecccccccccCCCCCeEEEEEE-------------EEEcCCce
Q 001679 100 IPPGHYYVDLHFAEIINTNGPKGMRVFNVFVQ-EEKVVSDFDIFSIVGANKPLQLVDIG-------------VSVKEEGT 165 (1032)
Q Consensus 100 v~~G~Y~VrLhFaEi~~~~~~~G~RvFdV~In-g~~vl~~fDI~~~aG~~~a~~~~~f~-------------V~v~~dg~ 165 (1032)
-..|+|.+.|.|||.++. .++..+|||.+| +..|..++|||..+|+...+.-.... +..-..|.
T Consensus 128 k~dgdyalvlkfaevyF~--~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~gess~~t~gk 205 (355)
T KOG3593|consen 128 KEDGDYALVLKFAEVYFK--TCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGESSISTLGK 205 (355)
T ss_pred cCCCceehhhhHHHHHHH--hhhhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEeeeEEeecce
Confidence 788999999999999988 789999999999 99999999999999965433221111 11113477
Q ss_pred EEEEe-eccCCCceeEEEEEeecCC
Q 001679 166 VVVRF-EGISGSPAVSGICIRRASK 189 (1032)
Q Consensus 166 L~I~f-~~~~g~p~InaIEI~k~~~ 189 (1032)
|+|.| ++..+||.+||..|....-
T Consensus 206 l~le~~kg~ldnpk~~a~aIl~g~v 230 (355)
T KOG3593|consen 206 LNLEFLKGVLDNPKDCARAILVGTV 230 (355)
T ss_pred EEEEeecccCCChhhhhHHHhhccc
Confidence 88888 5778899999999987543
No 36
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.24 E-value=7.8e-14 Score=168.40 Aligned_cols=277 Identities=26% Similarity=0.302 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCCCcccccCCCceEEEecC-CCCCceeEE-e----CCcCceeeecce
Q 001679 354 FKMKYSEEQAKRKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCATVVDFDA-AKDGELGVL-T----GSSTRKTFKFDR 427 (1032)
Q Consensus 354 l~~~~~~e~~~Rr~l~n~~~elkgnIrV~~RvRP~~~~E~~~~~~~vv~~~~-~~~~~~~~~-~----~~~~~~~F~FD~ 427 (1032)
+.....++..++|.||+-++..+ +++|+|+|+|......+. .....|.. ++.-...+. + .......|.||.
T Consensus 283 ~~~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et--~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~ 359 (568)
T COG5059 283 SGHIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEET--INTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDL 359 (568)
T ss_pred CCccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHH--HHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhh
Confidence 44456788899999999999999 999999999987432110 00000100 000000001 1 122335799999
Q ss_pred EECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHh-cCCCceeeeeee
Q 001679 428 VFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKE-RSETFTYNISVS 506 (1032)
Q Consensus 428 VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-~~~~~~~~v~vS 506 (1032)
+|.+...+..++.....+++..++| +++||++++|+++||.- ...++.+-.+...|..... ....|.|...+-
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 433 (568)
T COG5059 360 SEDRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQ 433 (568)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999964 4566777777888887665 345678888888
Q ss_pred EEEEEcCceeeccCCCCCCccccccccCCCceecCCcEEEEeCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEE
Q 001679 507 VLEVYNEQIRDLLATSPTSKKLEIKQSSEGSHHVPGIVEANVNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIM 586 (1032)
Q Consensus 507 ~~EIYnE~i~DLL~~~~~~~~l~i~~~~~~~~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~ 586 (1032)
++++|-....++...........+............+.........+..... .+...+..+.+..|.+++++|++|...
T Consensus 434 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~ 512 (568)
T COG5059 434 FLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDH 512 (568)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhc
Confidence 8888733333333221111111111100000000000001111111111111 567888999999999999999999888
Q ss_pred EEEeecCCCceeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHh
Q 001679 587 VRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLA 644 (1032)
Q Consensus 587 v~~~~~~~~~~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~ 644 (1032)
....+...+... +++|||||+||. .+.+-|.++++..++|++|..+|++|.++.
T Consensus 513 ~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 513 LNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 776654444333 899999999999 999999999999999999999999998874
No 37
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.98 E-value=0.19 Score=67.11 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=10.9
Q ss_pred EEeCChHHHHHHHHhh
Q 001679 546 ANVNSIREAWNVLQTG 561 (1032)
Q Consensus 546 ~~V~s~~e~~~ll~~g 561 (1032)
+.|.+.+.+..+....
T Consensus 617 ~Iv~~l~~A~~l~~~~ 632 (1163)
T COG1196 617 LVVDDLEQARRLARKL 632 (1163)
T ss_pred EEecCHHHHHHHHHhc
Confidence 5577788877776543
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.55 E-value=0.52 Score=63.06 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001679 350 QCEDFKMKYSEEQAKRKELYNQIQQTRG 377 (1032)
Q Consensus 350 ~~~~l~~~~~~e~~~Rr~l~n~~~elkg 377 (1032)
.+.+++..|.........+...++++++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (1163)
T COG1196 461 RLKELERELAELQEELQRLEKELSSLEA 488 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555444
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.54 E-value=0.59 Score=59.76 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHhc
Q 001679 482 YRTLEQLFEIAKER 495 (1032)
Q Consensus 482 pral~~LF~~~~~~ 495 (1032)
.+++..||+...-.
T Consensus 533 ~~~Lr~i~~~~~~~ 546 (1074)
T KOG0250|consen 533 ARILRAIMRRLKIP 546 (1074)
T ss_pred HHHHHHHHHHcCCC
Confidence 46788888766543
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.75 Score=59.05 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=10.0
Q ss_pred EEEEEEEeecccC
Q 001679 105 YYVDLHFAEIINT 117 (1032)
Q Consensus 105 Y~VrLhFaEi~~~ 117 (1032)
-+|.+||-.|..-
T Consensus 160 CsV~vhFq~iiD~ 172 (1293)
T KOG0996|consen 160 CSVEVHFQKIIDK 172 (1293)
T ss_pred eeEEEeeeeeecc
Confidence 5788999887744
No 41
>PRK11637 AmiB activator; Provisional
Probab=96.92 E-value=0.49 Score=56.39 Aligned_cols=9 Identities=0% Similarity=-0.112 Sum_probs=4.1
Q ss_pred ccccccccC
Q 001679 974 SYENKKRKS 982 (1032)
Q Consensus 974 ~~~~~~~~~ 982 (1032)
..+.++...
T Consensus 345 ~~~G~V~~~ 353 (428)
T PRK11637 345 IADGRVLLA 353 (428)
T ss_pred cCCeEEEEe
Confidence 335555333
No 42
>PRK11637 AmiB activator; Provisional
Probab=96.89 E-value=0.19 Score=59.89 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 001679 714 LQKMKVMLEKAR 725 (1032)
Q Consensus 714 l~~lk~~l~~~~ 725 (1032)
+..++..+....
T Consensus 49 l~~l~~qi~~~~ 60 (428)
T PRK11637 49 LKSIQQDIAAKE 60 (428)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.70 E-value=4.2 Score=54.25 Aligned_cols=13 Identities=23% Similarity=0.297 Sum_probs=9.4
Q ss_pred EEeCChHHHHHHH
Q 001679 546 ANVNSIREAWNVL 558 (1032)
Q Consensus 546 ~~V~s~~e~~~ll 558 (1032)
+.|.+.+.+..+.
T Consensus 624 ~v~~~l~~a~~~~ 636 (1164)
T TIGR02169 624 LVVEDIEAARRLM 636 (1164)
T ss_pred EEEcCHHHHHHHh
Confidence 4677888877764
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.55 E-value=0.62 Score=51.08 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=26.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 839 RESESHSISLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQQFQ 891 (1032)
Q Consensus 839 ~~~e~~~~~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~~q 891 (1032)
..++.++..|..++++.+.+....+.. ...|+..+..|+.+|........
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~---v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERR---VKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544443332 34677777777777665544433
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.48 E-value=0.52 Score=64.40 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=16.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 001679 721 LEKARQDSRSKDESLRKLEENLQNLENRAK 750 (1032)
Q Consensus 721 l~~~~~e~~~~~~~~~~le~~l~~le~~~~ 750 (1032)
+.++..+.......+..|++++..++..+.
T Consensus 952 ~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 952 LQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666666554433
No 46
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=4.9 Score=52.06 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=8.5
Q ss_pred EEeecccCCCcceEeec
Q 001679 457 IFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm~G 473 (1032)
=+|||.++=+.--|+.|
T Consensus 729 Riaygk~rr~RVvTL~G 745 (1293)
T KOG0996|consen 729 RIAYGKDRRWRVVTLDG 745 (1293)
T ss_pred HHhhcCCCceEEEEecc
Confidence 35666555444444444
No 47
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.42 E-value=0.27 Score=49.05 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHH
Q 001679 276 TLDQTVEKQAENLINITSRYECDKKY---WAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKM-VIGVQALVAQC 351 (1032)
Q Consensus 276 ~l~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~-~~~~~~~~~~~ 351 (1032)
.+...++.+....+....+|+.+... ....|..++.++..++.++..+..++......+.....- ...-..+..+.
T Consensus 28 ~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~ 107 (132)
T PF07926_consen 28 SLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKEL 107 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33455666666777777788877642 334666777777777777777777766666554433321 12223456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 001679 352 EDFKMKYSEEQAKRKELYNQIQQT 375 (1032)
Q Consensus 352 ~~l~~~~~~e~~~Rr~l~n~~~el 375 (1032)
.+++.++.+-....+-||++|+.+
T Consensus 108 ~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 108 SELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788888888899999999999865
No 48
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.40 E-value=0.89 Score=55.16 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 001679 822 IFQQKVKDIENKLKEQERESESHSISLQHKVKELESKLKEQERQHVES--------LMLRQKIKELEDKLKEQEQQFQC 892 (1032)
Q Consensus 822 ~~~~k~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~~~~e~--------~~l~~k~~~Le~~l~~~~~~~q~ 892 (1032)
++-+.+.++...|...+...-.....+...|.+|.+++...+...++. .-|-.++..|++.|..+...+.+
T Consensus 584 ~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawer 662 (961)
T KOG4673|consen 584 MLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWER 662 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHH
Confidence 334444444444444433333333344455556666655544443321 22556666666666555554444
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.39 E-value=0.78 Score=58.72 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=15.9
Q ss_pred CcceEEEeecccCCCcceEeec
Q 001679 452 GYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 452 G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
|-++. |.-|+.||||+-.|.+
T Consensus 61 g~~vN-fI~G~NGSGKSAIltA 81 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAILTA 81 (1074)
T ss_pred CCCce-EeecCCCCcHHHHHHH
Confidence 44444 8889999999887753
No 50
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.25 E-value=0.76 Score=55.71 Aligned_cols=208 Identities=21% Similarity=0.303 Sum_probs=99.8
Q ss_pred EeCCCCcChHhHHHHHHHHHHhccccccccccccChHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHhhhhH
Q 001679 676 QISPSEQDLSETLSSLNFATQVRGVELGPARKQIDTSELQKMKVMLEK--ARQDSRSKDESLRKLEENLQNLENRAKYKD 753 (1032)
Q Consensus 676 ~ISP~~~~~~ETl~TL~fA~r~~~i~~~p~~~~~~~~el~~lk~~l~~--~~~e~~~~~~~~~~le~~l~~le~~~~~~~ 753 (1032)
.|||....|..-+.+|.- .|.....-+..---++..++..+.. .+.++..+++.|..|..+-+.|-...-...
T Consensus 399 ~~ssl~~e~~QRva~lEk-----Kvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs 473 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLEK-----KVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQS 473 (961)
T ss_pred cccchHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 367777777777766642 1111100010001123333333322 123556678888888887777666555555
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHHH
Q 001679 754 QTYKNQQEKVKELEGQVSLKSNLHDQSDKQASQLLERLKGRE---------------------ELCSTLQIKVKELENRL 812 (1032)
Q Consensus 754 ~~~~~~~e~~~~le~~~~~~~~l~~~~e~~~~~l~~~~~~~~---------------------e~~~~l~~~l~ele~~l 812 (1032)
.+++++..++++-+.-+..+.++...++.+...+..-+..++ +....++..+.+++.+
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~- 552 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQ- 552 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-
Confidence 556666665555544333333333333333333333333333 3333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Q 001679 813 RDRQQSESAIFQQKVKDI--ENKLKEQERESESHSISLQHKVKELESKLKEQERQHV-ESLMLRQKIKELEDKLKEQEQQ 889 (1032)
Q Consensus 813 ~~~~~~~~~~~~~k~~~~--e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~~~~-e~~~l~~k~~~Le~~l~~~~~~ 889 (1032)
..++.+.+.....++ ++.+++ .+...+...|-+.+.+|..++...++.-. -...++.++.+|+.+|...+.+
T Consensus 553 ---~~a~qat~d~a~~Dlqk~nrlkQ--dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R 627 (961)
T KOG4673|consen 553 ---ALAEQATNDEARSDLQKENRLKQ--DEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERR 627 (961)
T ss_pred ---HHHHHHhhhhhhhhHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222 122221 12222334455666677776665544411 1256888899999999888888
Q ss_pred HHHHh
Q 001679 890 FQCRL 894 (1032)
Q Consensus 890 ~q~~~ 894 (1032)
|+...
T Consensus 628 ~eel~ 632 (961)
T KOG4673|consen 628 CEELI 632 (961)
T ss_pred HHHHH
Confidence 77644
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.23 E-value=2.1 Score=51.86 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=7.1
Q ss_pred eeeEeecCCCcc
Q 001679 601 KLWLVDLAGSER 612 (1032)
Q Consensus 601 kL~lVDLAGSEr 612 (1032)
.++.||=.|.=|
T Consensus 91 qfcYv~~~g~V~ 102 (546)
T PF07888_consen 91 QFCYVDQKGEVR 102 (546)
T ss_pred EEEEECCCccEE
Confidence 456677666533
No 52
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.21 E-value=1.2 Score=59.52 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=9.1
Q ss_pred eecccCCCcceEe
Q 001679 459 AYGQTGTGKTFTM 471 (1032)
Q Consensus 459 aYGqTGSGKTyTm 471 (1032)
-+|++|||||..|
T Consensus 28 i~G~NGsGKS~il 40 (1164)
T TIGR02169 28 ISGPNGSGKSNIG 40 (1164)
T ss_pred EECCCCCCHHHHH
Confidence 3677777777655
No 53
>PRK02224 chromosome segregation protein; Provisional
Probab=96.00 E-value=0.51 Score=61.28 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=12.2
Q ss_pred cccccCcccccccchh
Q 001679 200 FLKCNNCAAEIEVPSA 215 (1032)
Q Consensus 200 ~~~~~~~~~~~~~~~~ 215 (1032)
...|+.|..++...+.
T Consensus 451 ~~~Cp~C~r~~~~~~~ 466 (880)
T PRK02224 451 AGKCPECGQPVEGSPH 466 (880)
T ss_pred cccCCCCCCcCCCcch
Confidence 3569999998876664
No 54
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.98 E-value=0.45 Score=52.03 Aligned_cols=90 Identities=19% Similarity=0.290 Sum_probs=56.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HH------------------
Q 001679 287 NLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVI----GV------------------ 344 (1032)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~----~~------------------ 344 (1032)
.|+....++..+...-...+.-|..++...+..+..|..++..|...++....... .+
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q 157 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQ 157 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhh
Confidence 33333444444444444455566666666666677777766666655443322110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001679 345 QALVAQCEDFKMKYSEEQAKRKELYNQIQQTR 376 (1032)
Q Consensus 345 ~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~elk 376 (1032)
.-....+++|+++|.+|-.+||+|.-++.-|.
T Consensus 158 ~~~~sk~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 158 YYSDSKYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 01236789999999999999999999988776
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.89 E-value=1.7 Score=54.82 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001679 846 ISLQHKVKELESKLKEQER 864 (1032)
Q Consensus 846 ~~l~~k~~eLe~k~~~~~~ 864 (1032)
..+++|...||.-|..+.+
T Consensus 597 ~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 597 SAMQDKNQHLENSLSAETR 615 (697)
T ss_pred HHHHHHHHHHHHhhhHHHH
Confidence 3455565556655554443
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.89 E-value=1.6 Score=58.63 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh----chhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001679 245 ECHEAWMSLTAANEQLEKVRMELDNKAFQTL----TLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEH 320 (1032)
Q Consensus 245 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~ 320 (1032)
.+......+..+.++|..+...+........ .++..+.....++..+...++.....+...+..++..+...+.++
T Consensus 250 ~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L 329 (1201)
T PF12128_consen 250 KLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSEL 329 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555544444433222221 112233333344445555555555556666666666666666666
Q ss_pred HHHHHHHHH
Q 001679 321 SQLSREAHE 329 (1032)
Q Consensus 321 ~~l~~e~~~ 329 (1032)
..+......
T Consensus 330 ~~i~~~~~~ 338 (1201)
T PF12128_consen 330 DEIEQQKKD 338 (1201)
T ss_pred HHHHHHHHH
Confidence 655543333
No 57
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.74 E-value=2.4 Score=56.37 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=3.5
Q ss_pred EEEEEEe
Q 001679 106 YVDLHFA 112 (1032)
Q Consensus 106 ~VrLhFa 112 (1032)
.|.+.|.
T Consensus 78 ~v~~~~~ 84 (1179)
T TIGR02168 78 EVELVFD 84 (1179)
T ss_pred EEEEEEe
Confidence 4555553
No 58
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.69 E-value=2.7 Score=57.84 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001679 871 MLRQKIKELEDKLKEQEQQFQ 891 (1032)
Q Consensus 871 ~l~~k~~~Le~~l~~~~~~~q 891 (1032)
.++.+..+|..+|..+..++.
T Consensus 1122 K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444443
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=2.9 Score=51.67 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001679 870 LMLRQKIKELEDKLKEQEQQFQCRLS 895 (1032)
Q Consensus 870 ~~l~~k~~~Le~~l~~~~~~~q~~~~ 895 (1032)
..+..++++|.+.+..++-.++..++
T Consensus 566 di~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 566 DIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444444444443333
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.68 E-value=3 Score=45.73 Aligned_cols=53 Identities=23% Similarity=0.430 Sum_probs=35.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001679 841 SESHSISLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQQFQCRLSR 896 (1032)
Q Consensus 841 ~e~~~~~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~~q~~~~~ 896 (1032)
+......++.+|+.|..++++.+..- ...+..+..|+..+..+...+...-..
T Consensus 167 ~~~re~~~e~~i~~L~~~lkeaE~Ra---e~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 167 ASEREDEYEEKIRDLEEKLKEAENRA---EFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777665542 356777788888877777777665443
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.63 E-value=1 Score=54.56 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=82.7
Q ss_pred ccccccCcccccccchhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHH---HHHHH-HH----HHHHHHHHHHHH
Q 001679 199 EFLKCNNCAAEIEVPSAQKKLMRIKA---TEKYEKKIEELNKQFQLKTNECHE---AWMSL-TA----ANEQLEKVRMEL 267 (1032)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~k~~~~k~---~~~~~~~ie~l~~e~~~~~~e~~~---~~~~~-~~----~~~~~~~~~~~~ 267 (1032)
+.....+|+++|--+-.|+|--...+ -+-|-.++-.|..|+.....+... .|..- .. -+.++..++.-+
T Consensus 22 sg~~~~~~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l 101 (546)
T KOG0977|consen 22 SGVSASNAASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLL 101 (546)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHH
Confidence 33337889999998988888544333 367777777777666522222221 11110 00 012222222222
Q ss_pred hHHHHhhhchhHHHHHHHHHHHHHhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001679 268 DNKAFQTLTLDQTVEKQAENLINITSRYECD----------KKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPEL 337 (1032)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~ 337 (1032)
+..-.....+...+.+-..++..+..+|... ...|...|..++.++..++..+..+..++.. |
T Consensus 102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~-------L 174 (546)
T KOG0977|consen 102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR-------L 174 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-------H
Confidence 2211111122222333333333333333322 1223334444444444444444444433333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCE
Q 001679 338 NKMVIGVQALVAQCEDFKMKYSEEQAKRKELYNQIQQTRGNI 379 (1032)
Q Consensus 338 ~~~~~~~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~elkgnI 379 (1032)
......+ -.++..++..+..|..+|-.++|.+|+|..-|
T Consensus 175 k~en~rl---~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 175 KAENSRL---REELARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred HHHhhhh---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333322 34555566777888999999999999986433
No 62
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.52 E-value=3.7 Score=44.53 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001679 779 QSDKQASQLLERLKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERESESHSISLQHKVKELESK 858 (1032)
Q Consensus 779 ~~e~~~~~l~~~~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k 858 (1032)
+...+.++|...+....++|..+++.+.+|++.--. ++.-+..-.-.+++.+.+|.. --+++.-||..
T Consensus 88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDd-LErakRati~sleDfeqrLnq-----------AIErnAfLESE 155 (333)
T KOG1853|consen 88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDD-LERAKRATIYSLEDFEQRLNQ-----------AIERNAFLESE 155 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHhhhhhhhhHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 445666677777777777777777777777643111 111111111122222222222 22345567777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001679 859 LKEQERQHVESLMLRQKIKELEDKLKEQE 887 (1032)
Q Consensus 859 ~~~~~~~~~e~~~l~~k~~~Le~~l~~~~ 887 (1032)
+.+.+..-+....|+.+.++|.++|.-+.
T Consensus 156 LdEke~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 156 LDEKEVLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766665556677777777777766544
No 63
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.46 E-value=4.1 Score=51.17 Aligned_cols=38 Identities=32% Similarity=0.356 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001679 846 ISLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKL 883 (1032)
Q Consensus 846 ~~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l 883 (1032)
..|+++++.||..+.+.+...+...+|.+-.++++-+|
T Consensus 458 lnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DL 495 (1243)
T KOG0971|consen 458 LNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDL 495 (1243)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777666655443344544444444443
No 64
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.37 E-value=5.9 Score=49.12 Aligned_cols=43 Identities=12% Similarity=0.279 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 848 LQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQQFQCR 893 (1032)
Q Consensus 848 l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~~q~~ 893 (1032)
|..+|-|+-.-++++.. ++...-...+.|+.++......+++.
T Consensus 489 Yt~RIlEIv~NI~KQk~---eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKE---EIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444444433333333 34555566666666666655555543
No 65
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.15 E-value=5.5 Score=42.48 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 001679 790 RLKGREELCSTLQIKVKELE 809 (1032)
Q Consensus 790 ~~~~~~e~~~~l~~~l~ele 809 (1032)
+++..+..+..+...++.++
T Consensus 90 klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 90 KLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444443
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.11 E-value=1.2 Score=56.17 Aligned_cols=78 Identities=12% Similarity=0.235 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001679 300 KYWAAAVSDLQEKVKMMKKEHSQLSREAHECADS----IPELNKMVIGVQALVAQCEDFKMKYSEEQAKRKELYNQIQQT 375 (1032)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~el 375 (1032)
+++...+..|+.+++...+.+..++.++.++..+ -.+...+..+|+.+.+.+..|+..|..|-.+.-.||.-|-+.
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~a 627 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDA 627 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444332 223444555666666666677777776666666666655554
Q ss_pred CC
Q 001679 376 RG 377 (1032)
Q Consensus 376 kg 377 (1032)
|.
T Consensus 628 kr 629 (697)
T PF09726_consen 628 KR 629 (697)
T ss_pred HH
Confidence 43
No 67
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.96 E-value=20 Score=47.89 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001679 871 MLRQKIKELEDKLKEQEQQFQ 891 (1032)
Q Consensus 871 ~l~~k~~~Le~~l~~~~~~~q 891 (1032)
.++.++.+++.++......+.
T Consensus 884 ~l~~~~~~~~~~~~~~~~~~~ 904 (1179)
T TIGR02168 884 SLEEALALLRSELEELSEELR 904 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444444433
No 68
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.88 E-value=11 Score=44.53 Aligned_cols=9 Identities=11% Similarity=-0.053 Sum_probs=4.7
Q ss_pred EEEEEeCCC
Q 001679 672 LMFVQISPS 680 (1032)
Q Consensus 672 ~mI~~ISP~ 680 (1032)
+++++++|+
T Consensus 24 ~~~~~~s~s 32 (420)
T COG4942 24 AAVLAAAFS 32 (420)
T ss_pred hcccccchh
Confidence 345555554
No 69
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=94.65 E-value=0.1 Score=65.06 Aligned_cols=88 Identities=41% Similarity=0.742 Sum_probs=68.4
Q ss_pred CceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCC
Q 001679 419 TRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSET 498 (1032)
Q Consensus 419 ~~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~ 498 (1032)
....+.|+.+..+...+.--+....+-+..++++++.- +|++|+|.+.....|+.-+....++........
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 94 (670)
T KOG0239|consen 24 PKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKT- 94 (670)
T ss_pred cccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCC-
Confidence 34678899988887777777777778888888888876 899999999988889888888777764433222
Q ss_pred ceeeeeeeEEEEEcCceeeccCC
Q 001679 499 FTYNISVSVLEVYNEQIRDLLAT 521 (1032)
Q Consensus 499 ~~~~v~vS~~EIYnE~i~DLL~~ 521 (1032)
...++.|++.+.|++..
T Consensus 95 ------~~~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 95 ------SNVVEAYNERLRDLLSE 111 (670)
T ss_pred ------chhHHHHHHHHhhhccc
Confidence 11678899999999874
No 70
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=5.4 Score=50.93 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred cEEEEeCChHHHHHHHHhhhcccccc
Q 001679 543 IVEANVNSIREAWNVLQTGSSARAVG 568 (1032)
Q Consensus 543 l~e~~V~s~~e~~~ll~~g~~~R~~~ 568 (1032)
|-.+.|.+..-...+|..|.-.|++.
T Consensus 548 LynvVv~te~tgkqLLq~g~l~rRvT 573 (1174)
T KOG0933|consen 548 LYNVVVDTEDTGKQLLQRGNLRRRVT 573 (1174)
T ss_pred ceeEEeechHHHHHHhhcccccceeE
Confidence 45577778788888888888777653
No 71
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.59 E-value=7.2 Score=41.16 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001679 852 VKELESKLKEQERQHVESLMLRQKIKELEDKLK 884 (1032)
Q Consensus 852 ~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~ 884 (1032)
+.+|...+.+.... ...|+.++-.|++.|.
T Consensus 160 i~eL~~~ieEy~~~---teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 160 IEELKKTIEEYRSI---TEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44444444443332 2356666666666554
No 72
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.57 E-value=13 Score=47.51 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccccccc
Q 001679 871 MLRQKIKELEDKLKEQEQQFQCRLSRDFADLIKYTPNEVKTSK 913 (1032)
Q Consensus 871 ~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~~~~~~~~~~k~~~ 913 (1032)
.++.++..|+.+|....- .+.....+.++++..++|.+.
T Consensus 476 ~lk~~~~~LQ~eLsEk~~----~l~~~kee~s~l~s~~~K~~s 514 (775)
T PF10174_consen 476 ELKAKLESLQKELSEKEL----QLEDAKEEASKLASSQEKKDS 514 (775)
T ss_pred HHHHHHHHHhhhhHHHHH----HHHHhhhHHHHHhhccchhhh
Confidence 344444444444444332 223444567777777777653
No 73
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.53 E-value=5.5 Score=50.15 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001679 216 QKKLMRIKATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDN 269 (1032)
Q Consensus 216 ~~k~~~~k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1032)
|.|.+..+....-+..+++++.+++...-+.+++....++.-.+-++++.|+..
T Consensus 344 ~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq 397 (980)
T KOG0980|consen 344 QLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ 397 (980)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444322222223333333333333444444444
No 74
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.44 E-value=8.3 Score=48.67 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001679 304 AAVSDLQEKVKMMKKE 319 (1032)
Q Consensus 304 ~~~~~l~~~~~~~~~e 319 (1032)
.+...|+.+|...+.|
T Consensus 276 ~qqa~Lqrel~raR~e 291 (1243)
T KOG0971|consen 276 EQQADLQRELKRARKE 291 (1243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 75
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.41 E-value=5.6 Score=40.19 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=12.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 001679 721 LEKARQDSRSKDESLRKLEENLQNLEN 747 (1032)
Q Consensus 721 l~~~~~e~~~~~~~~~~le~~l~~le~ 747 (1032)
|...+.+..+....+..|+.++...+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~ 38 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQE 38 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555554433
No 76
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.33 E-value=6.8 Score=39.75 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhH
Q 001679 733 ESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQV 770 (1032)
Q Consensus 733 ~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~ 770 (1032)
.....++..+..++......+..+..++.++..++.++
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~el 51 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEEL 51 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 77
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.19 E-value=8.1 Score=48.06 Aligned_cols=51 Identities=25% Similarity=0.248 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001679 282 EKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECAD 332 (1032)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~ 332 (1032)
+.|+..|..--.+++.++..+.+.+..++++++..+.|+..+..+++...+
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444566666777777777777777777777766666555543
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=94.04 E-value=14 Score=47.95 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=11.5
Q ss_pred EeecccCCCcceEe
Q 001679 458 FAYGQTGTGKTFTM 471 (1032)
Q Consensus 458 faYGqTGSGKTyTm 471 (1032)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 46899999998754
No 79
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.02 E-value=21 Score=45.12 Aligned_cols=187 Identities=20% Similarity=0.231 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHhhhhhhhhhHH---------
Q 001679 711 TSELQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQVSLKSNLHDQSD--------- 781 (1032)
Q Consensus 711 ~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~~~~~~l~~~~e--------- 781 (1032)
..++++|+.+|.++-.+.......+...+..+..-... +..+++++..|-.++.....+....+
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~a-------ls~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~ 336 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGA-------LSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEK 336 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 56788999988888666555555555555554443333 33444455554444443322211000
Q ss_pred ---------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001679 782 ---------------KQASQLLERLKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERESESHSI 846 (1032)
Q Consensus 782 ---------------~~~~~l~~~~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~e~~~~ 846 (1032)
.....+..+++.....+..++..++.+..++......... ....++.-...+.++...++....
T Consensus 337 ~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~-ek~~~~~e~q~L~ekl~~lek~~r 415 (717)
T PF09730_consen 337 ERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ-EKDRLESEVQNLKEKLMSLEKSSR 415 (717)
T ss_pred ccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0012234445555555566666666665544433222111 111122222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccc
Q 001679 847 SLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQQFQCRLSRDFADLIKYTPNEV 909 (1032)
Q Consensus 847 ~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~~~~~~~~~~ 909 (1032)
.-++++..|+..+........ .-...+...+++|....+.+-..+++ ..-....||..+
T Consensus 416 e~qeri~~LE~ELr~l~~~A~---E~q~~LnsAQDELvtfSEeLAqLYHH-VC~cNgeTPnRV 474 (717)
T PF09730_consen 416 EDQERISELEKELRALSKLAG---ESQGSLNSAQDELVTFSEELAQLYHH-VCMCNGETPNRV 474 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCCCCccH
Confidence 224456666666554444322 23334444455555555555444433 333456677764
No 80
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.95 E-value=8.9 Score=47.11 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=13.2
Q ss_pred eEEEeecccCCCcceEe
Q 001679 455 VCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm 471 (1032)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35566899999999755
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.83 E-value=15 Score=47.67 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 849 QHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQQFQCR 893 (1032)
Q Consensus 849 ~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~~q~~ 893 (1032)
-+.+++|+.+...-++. +..+..++..|+.++++..+.+...
T Consensus 1709 l~~l~dLe~~y~~~~~~---L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQA---LEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHHHHHHhhhhHH---HHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 33455555443332221 2344555566666666666655543
No 82
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=3.1 Score=51.40 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=32.3
Q ss_pred HHHHHHhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 763 VKELEGQVSLKSNLHDQSDKQASQLLERLKGREELCSTLQIKVKELENRLRDRQQ 817 (1032)
Q Consensus 763 ~~~le~~~~~~~~l~~~~e~~~~~l~~~~~~~~e~~~~l~~~l~ele~~l~~~~~ 817 (1032)
-++|..++...+.-+.....+...|......++..|+.+...+.++++....+++
T Consensus 509 kq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~ 563 (1118)
T KOG1029|consen 509 KQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLN 563 (1118)
T ss_pred HHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444433333334445666666677777788888888777765555444
No 83
>PRK09039 hypothetical protein; Validated
Probab=93.69 E-value=8.7 Score=44.59 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001679 224 ATEKYEKKIEELNKQFQ 240 (1032)
Q Consensus 224 ~~~~~~~~ie~l~~e~~ 240 (1032)
..+..++++.+|..+..
T Consensus 47 ~i~~~~~eL~~L~~qIa 63 (343)
T PRK09039 47 EISGKDSALDRLNSQIA 63 (343)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 34566666666665554
No 84
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.68 E-value=11 Score=41.55 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001679 227 KYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDN 269 (1032)
Q Consensus 227 ~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1032)
++..++..|........+....+...++.+|..+..+..++..
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~ 56 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELED 56 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333444444455555555555555444
No 85
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.68 E-value=15 Score=41.57 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHhh
Q 001679 714 LQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQVSL 772 (1032)
Q Consensus 714 l~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~~~ 772 (1032)
+..++..+..++............++.++..++..+.........++.++..|+.++..
T Consensus 77 ~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 77 IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 44445555555544444444445566666666555444333344445555555555543
No 86
>PRK09039 hypothetical protein; Validated
Probab=93.55 E-value=11 Score=43.62 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=9.3
Q ss_pred EEeCCCCcChHhHHHHHHHH
Q 001679 675 VQISPSEQDLSETLSSLNFA 694 (1032)
Q Consensus 675 ~~ISP~~~~~~ETl~TL~fA 694 (1032)
++|.|. |-..|+||=..
T Consensus 13 ~~~wpg---~vd~~~~ll~~ 29 (343)
T PRK09039 13 VDYWPG---FVDALSTLLLV 29 (343)
T ss_pred CCCCch---HHHHHHHHHHH
Confidence 356664 45566666443
No 87
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.55 E-value=15 Score=45.80 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 001679 714 LQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAK 750 (1032)
Q Consensus 714 l~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~ 750 (1032)
+..+...+..++.+.......+..|+..+..|+..+.
T Consensus 31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555666666655555667777777777765443
No 88
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.50 E-value=2.7 Score=46.59 Aligned_cols=29 Identities=41% Similarity=0.588 Sum_probs=24.1
Q ss_pred hHHHH-HHhcCcceEEEeecccCCCcceEe
Q 001679 443 SPLVI-SVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 443 ~plV~-~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
-+||. ++-.|+.--|+|.|.||.|||..|
T Consensus 30 dQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 35666 566899999999999999998655
No 89
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.47 E-value=7.9 Score=52.28 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 001679 875 KIKELEDKLKEQEQQFQCRLSRDFADLIKYT 905 (1032)
Q Consensus 875 k~~~Le~~l~~~~~~~q~~~~~~~~~~~~~~ 905 (1032)
.+..+.+++..+.+.++..-.+ ...+..|.
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~-r~~V~eY~ 801 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEER-RAEVIEYE 801 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHH
Confidence 3355555666666665554322 33344443
No 90
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=3.8 Score=47.93 Aligned_cols=132 Identities=21% Similarity=0.241 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 248 EAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREA 327 (1032)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~ 327 (1032)
.......+.+.+++.+.+--...++-...-...+.+....|..+..+......+|.+--.-|-.+...++.+..-+.-+.
T Consensus 262 s~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~ 341 (521)
T KOG1937|consen 262 SKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETED 341 (521)
T ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchH
Confidence 33334455555555444422222222222234556655556666666666666776655555555444444444333222
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhcCCCEE
Q 001679 328 HECADSIPELNKMVIGVQALVAQCEDFKMKYSEEQ------AKRKELYNQIQQTRGNIR 380 (1032)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~------~~Rr~l~n~~~elkgnIr 380 (1032)
.+ -.+|+++..-+.++.+.....+++..++..+. ..|+.+.-.|.|+-||||
T Consensus 342 ~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniR 399 (521)
T KOG1937|consen 342 EE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIR 399 (521)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHH
Confidence 22 12233333222222222222224444443332 237778888888888886
No 91
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.03 E-value=3.5 Score=51.81 Aligned_cols=122 Identities=21% Similarity=0.307 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhchhHHH--HHHHH--HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHH-
Q 001679 254 TAANEQLEKVRMELDNKAFQTLTLDQTV--EKQAE--NLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHS---QLSR- 325 (1032)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~--~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~---~l~~- 325 (1032)
.++.+++.+|+.=|.-+.+++.+|..-+ .|+.. .|..|..+|+.+|..+...+..|+.+++.+|++-. +|+.
T Consensus 586 e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRam 665 (717)
T PF09730_consen 586 EELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAM 665 (717)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666777777665543 33443 67789999999999999999999999999998744 4442
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001679 326 EAHECADSIPELNKMVIGVQALVAQCEDFKMKYSEEQAKRKELYNQIQQT 375 (1032)
Q Consensus 326 e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~el 375 (1032)
=+..|.+++..+.+|...+.+..++.+.|...++...+..--|--+|.++
T Consensus 666 Fa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLTQRLEdl 715 (717)
T PF09730_consen 666 FAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDL 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678888888888888887777777777777777666666666666554
No 92
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.02 E-value=36 Score=43.90 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=25.2
Q ss_pred cChHhHHHHHHHHHHhccccccccccccChHHHHHHHHHHHHHHhh
Q 001679 682 QDLSETLSSLNFATQVRGVELGPARKQIDTSELQKMKVMLEKARQD 727 (1032)
Q Consensus 682 ~~~~ETl~TL~fA~r~~~i~~~p~~~~~~~~el~~lk~~l~~~~~e 727 (1032)
.+-+-++.++.|+.||-..+-. +.+-..+.+.|+.++..++..
T Consensus 251 ~ykerlmDs~fykdRveelked---N~vLleekeMLeeQLq~lrar 293 (1195)
T KOG4643|consen 251 TYKERLMDSDFYKDRVEELKED---NRVLLEEKEMLEEQLQKLRAR 293 (1195)
T ss_pred ccchhhhhhHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHhc
Confidence 3455677788999998876522 223334445555555555543
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.97 E-value=17 Score=39.98 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001679 735 LRKLEENL 742 (1032)
Q Consensus 735 ~~~le~~l 742 (1032)
+.+++.++
T Consensus 33 l~k~~~e~ 40 (239)
T COG1579 33 LKKAKAEL 40 (239)
T ss_pred HHHHHHHH
Confidence 33333333
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.88 E-value=12 Score=37.99 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001679 782 KQASQLLERLKGREELCSTLQIKVKELE 809 (1032)
Q Consensus 782 ~~~~~l~~~~~~~~e~~~~l~~~l~ele 809 (1032)
.++..|..++...+..+..+...+.+..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444433
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.80 E-value=29 Score=42.24 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHhh
Q 001679 749 AKYKDQTYKNQQEKVKELEGQVSL 772 (1032)
Q Consensus 749 ~~~~~~~~~~~~e~~~~le~~~~~ 772 (1032)
+..++..++.++....+|..++..
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555555555555554
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.72 E-value=16 Score=44.80 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=6.3
Q ss_pred CCcchhhhccccC
Q 001679 654 NSKLTHLLQDSLG 666 (1032)
Q Consensus 654 dSKLT~LLqdsLg 666 (1032)
++.-..+|.+.||
T Consensus 149 ~~er~~il~~l~~ 161 (562)
T PHA02562 149 APARRKLVEDLLD 161 (562)
T ss_pred hHhHHHHHHHHhC
Confidence 3334455555554
No 97
>PRK01156 chromosome segregation protein; Provisional
Probab=92.71 E-value=11 Score=49.10 Aligned_cols=34 Identities=18% Similarity=0.438 Sum_probs=19.9
Q ss_pred ccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001679 201 LKCNNCAAEIEVPSAQKKLMRIKATEKYEKKIEELNKQFQ 240 (1032)
Q Consensus 201 ~~~~~~~~~~~~~~~~~k~~~~k~~~~~~~~ie~l~~e~~ 240 (1032)
..|++|.+++. ++. ..+....|..+++++..+..
T Consensus 453 ~~Cp~c~~~~~----~e~--~~e~i~~~~~~i~~l~~~i~ 486 (895)
T PRK01156 453 SVCPVCGTTLG----EEK--SNHIINHYNEKKSRLEEKIR 486 (895)
T ss_pred CCCCCCCCcCC----hhh--HHHHHHHHHHHHHHHHHHHH
Confidence 35666666655 222 33446677777777766554
No 98
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.62 E-value=20 Score=39.92 Aligned_cols=58 Identities=14% Similarity=0.315 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHh
Q 001679 714 LQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQVS 771 (1032)
Q Consensus 714 l~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~~ 771 (1032)
+..+......+..+....+..+..+......+..++......++.++.+|.+++..+.
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444443
No 99
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.58 E-value=31 Score=44.45 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhHh
Q 001679 711 TSELQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRA--KYKDQTYKNQQEKVKELEGQVS 771 (1032)
Q Consensus 711 ~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~--~~~~~~~~~~~e~~~~le~~~~ 771 (1032)
..++..++..++.++.......+....|+++++.++... ..-...+-+++.++..++.+..
T Consensus 256 lmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erd 318 (1195)
T KOG4643|consen 256 LMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERD 318 (1195)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhh
Confidence 446677899999998888777777788888888887654 2222333344444444444333
No 100
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.58 E-value=27 Score=47.99 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.3
Q ss_pred EEEeecccCCCcceEee
Q 001679 456 CIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm~ 472 (1032)
++.-+|++|||||.+|-
T Consensus 29 ~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 56677999999998875
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.57 E-value=3.2 Score=51.41 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhcCCCEE
Q 001679 364 KRKELYNQIQQTRGNIR 380 (1032)
Q Consensus 364 ~Rr~l~n~~~elkgnIr 380 (1032)
-|.-+-.+|.|.-||||
T Consensus 485 ~Rs~Yt~RIlEIv~NI~ 501 (594)
T PF05667_consen 485 NRSAYTRRILEIVKNIR 501 (594)
T ss_pred CHHHHHHHHHHHHHhHH
Confidence 35556666666666664
No 102
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.47 E-value=35 Score=43.76 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001679 718 KVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTY 756 (1032)
Q Consensus 718 k~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~ 756 (1032)
+..+..++..+..+......|+.++..|+..+..+...+
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433333
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.42 E-value=0.034 Score=60.13 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=32.2
Q ss_pred eeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 421 KTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 421 ~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
..|+||.-+.. ..++..|..+..+...--..+|. +|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 46999986654 33666666665555542223444 78899999999997644
No 104
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.41 E-value=4.9 Score=47.11 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001679 847 SLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQ 886 (1032)
Q Consensus 847 ~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~ 886 (1032)
....++++++.+.++... ....++.+|+++|+.+
T Consensus 414 vw~~kl~~~~e~~~~~~~------s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 414 VWRGKLKELEEREKEALG------SKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhH
Confidence 344555555554443332 3455555555555543
No 105
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.35 E-value=12 Score=40.06 Aligned_cols=54 Identities=28% Similarity=0.358 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001679 284 QAENLINITSRYECDKKY---WAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPEL 337 (1032)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~ 337 (1032)
.+.+|+..-..|+.++.. ..+.+..++.++..++-++..|.+....+.....+|
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555542 233445555555555555555555544444443333
No 106
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.35 E-value=24 Score=40.08 Aligned_cols=55 Identities=29% Similarity=0.363 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001679 842 ESHSISLQHKVKELESKLKEQERQHV-ESLMLRQKIKELEDKLKEQEQQFQCRLSR 896 (1032)
Q Consensus 842 e~~~~~l~~k~~eLe~k~~~~~~~~~-e~~~l~~k~~~Le~~l~~~~~~~q~~~~~ 896 (1032)
..++..+..+...|+..+.+.+.... +...+...+..++.++......++.....
T Consensus 229 ~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 229 QAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 33333444444444444443332211 22334555555555555555555444433
No 107
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.29 E-value=0.16 Score=60.41 Aligned_cols=91 Identities=29% Similarity=0.335 Sum_probs=60.2
Q ss_pred eeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeeccC---CCCchh--H--hHHHHHHHHHH
Q 001679 421 KTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTE---QSRGVN--Y--RTLEQLFEIAK 493 (1032)
Q Consensus 421 ~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~---~~~GIi--p--ral~~LF~~~~ 493 (1032)
..|..-.-|.|.-.|-. .+..||..+-.|...-+ -.|.|||||||||-.-- .-|-+| | -...+||...+
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 34666667778777743 34667777666665443 45999999999996521 112221 1 13457787777
Q ss_pred hcCCCceeeeeeeEEEEEcCce
Q 001679 494 ERSETFTYNISVSVLEVYNEQI 515 (1032)
Q Consensus 494 ~~~~~~~~~v~vS~~EIYnE~i 515 (1032)
+.-....+.-+|||+.-|.-.-
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HhCcCcceEEEeeeccccCccc
Confidence 7666667888999999996544
No 108
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.13 E-value=27 Score=42.68 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCcchh---hhccccCCC
Q 001679 621 DRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSKLTH---LLQDSLGGD 668 (1032)
Q Consensus 621 ~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSKLT~---LLqdsLgGn 668 (1032)
.|++|-..|-.==.-|+..|..... .--.|++|+. +|++.+|+.
T Consensus 36 sR~rEK~El~~LNDRLA~YIekVR~----LEaqN~~L~~di~~lr~~~~~~ 82 (546)
T KOG0977|consen 36 SREREKKELQELNDRLAVYIEKVRF----LEAQNRKLEHDINLLRGVVGRE 82 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCC
Confidence 4666655544333455566655431 1223566665 777888876
No 109
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.07 E-value=17 Score=45.01 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001679 869 SLMLRQKIKELEDKLKEQEQQFQCRLSRDFAD 900 (1032)
Q Consensus 869 ~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~ 900 (1032)
..+|+.+....+.+...+.+....+...|+..
T Consensus 602 v~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~a 633 (716)
T KOG4593|consen 602 VAQLKKEVESAEKRNQRLKEVFASKIQEFRDA 633 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666655555554
No 110
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.00 E-value=57 Score=45.04 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=10.1
Q ss_pred CcchhhhccccCCC
Q 001679 655 SKLTHLLQDSLGGD 668 (1032)
Q Consensus 655 SKLT~LLqdsLgGn 668 (1032)
+.+|+.|++||-..
T Consensus 211 ~~i~~fl~~yll~e 224 (1486)
T PRK04863 211 SAITRSLRDYLLPE 224 (1486)
T ss_pred HhHHHHHHHHcCCC
Confidence 47788888887543
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.95 E-value=0.073 Score=61.91 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=14.7
Q ss_pred eEEEeecccCCCcceEe
Q 001679 455 VCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm 471 (1032)
..|+-||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45888999999999876
No 112
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.72 E-value=13 Score=42.87 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001679 302 WAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNK 339 (1032)
Q Consensus 302 ~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~ 339 (1032)
++..|..+..++...+.++.++..++......++++..
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555554444444443
No 113
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.51 E-value=22 Score=38.09 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001679 871 MLRQKIKELEDKLKEQEQQFQCRLSRDFAD 900 (1032)
Q Consensus 871 ~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~ 900 (1032)
.|+.++..|.+.|.....++...+.....+
T Consensus 147 lLEkKl~~l~~~lE~keaqL~evl~~~nld 176 (201)
T PF13851_consen 147 LLEKKLQALSEQLEKKEAQLNEVLAAANLD 176 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 477777777777777777777665554433
No 114
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.36 E-value=23 Score=37.87 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001679 782 KQASQLLERLKGREELCSTLQIKVKELEN 810 (1032)
Q Consensus 782 ~~~~~l~~~~~~~~e~~~~l~~~l~ele~ 810 (1032)
+++..+...++...+....+..++.+.+.
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~ 96 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDE 96 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 115
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.29 E-value=47 Score=41.33 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=8.4
Q ss_pred HHHhHHhhHHHHHHH
Q 001679 629 INRSLSALGDVIYSL 643 (1032)
Q Consensus 629 INkSL~aLg~VI~aL 643 (1032)
+...+..|...|..+
T Consensus 203 l~~~~~~l~~~~~~i 217 (569)
T PRK04778 203 LEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666666544
No 116
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.12 E-value=20 Score=47.07 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=10.3
Q ss_pred ccccccCcccccccch
Q 001679 199 EFLKCNNCAAEIEVPS 214 (1032)
Q Consensus 199 ~~~~~~~~~~~~~~~~ 214 (1032)
+-..|++|..++....
T Consensus 456 ~~~~CPvCg~~l~~~~ 471 (908)
T COG0419 456 AGEKCPVCGQELPEEH 471 (908)
T ss_pred CCCCCCCCCCCCCcHH
Confidence 3468999985554333
No 117
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.09 E-value=33 Score=46.99 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=11.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 237 KQFQLKTNECHEAWMSLTAANEQLEKVRME 266 (1032)
Q Consensus 237 ~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (1032)
.++..+.+........+...+.++.+++..
T Consensus 196 k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 225 (1311)
T TIGR00606 196 QTQGQKVQEHQMELKYLKQYKEKACEIRDQ 225 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333333344333333333333
No 118
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.96 E-value=63 Score=44.75 Aligned_cols=189 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-HhhhhhhhhhHHHHHHHHHH
Q 001679 711 TSELQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQ-VSLKSNLHDQSDKQASQLLE 789 (1032)
Q Consensus 711 ~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~-~~~~~~l~~~~e~~~~~l~~ 789 (1032)
...++.|...++++..+....+..+..+..++......+..........+.+.+.+..+ -.....-.+.+...+..|.+
T Consensus 1242 ~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~ 1321 (1822)
T KOG4674|consen 1242 LEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKE 1321 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---
Q 001679 790 RLKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERESESHSISLQHKVKELESKLKEQERQH--- 866 (1032)
Q Consensus 790 ~~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~~~--- 866 (1032)
++...+..++++..++..+.+.+..++...........+.++ ++......+.......-.+.-++..........+
T Consensus 1322 el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~-ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t 1400 (1822)
T KOG4674|consen 1322 ELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELE-QLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDT 1400 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001679 867 --------------VESLMLRQKIKELEDKLKEQEQQFQCRLSRDFAD 900 (1032)
Q Consensus 867 --------------~e~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~ 900 (1032)
++...+.+++.+.+...+..+......++.....
T Consensus 1401 ~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~ 1448 (1822)
T KOG4674|consen 1401 SRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEA 1448 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHH
No 119
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.86 E-value=33 Score=38.80 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001679 346 ALVAQCEDFKMKYSEEQAKRKELYNQIQQTRGN 378 (1032)
Q Consensus 346 ~~~~~~~~l~~~~~~e~~~Rr~l~n~~~elkgn 378 (1032)
++-.....+..++.+.......+|..+-.+.+-
T Consensus 204 e~Rkeade~he~~ve~~~~~~e~~ee~~~~~~e 236 (294)
T COG1340 204 ELRKEADELHEEFVELSKKIDELHEEFRNLQNE 236 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455556666666666666666666555443
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.80 E-value=19 Score=41.30 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001679 304 AAVSDLQEKVKMMKKEHSQLSREAHECADSIP 335 (1032)
Q Consensus 304 ~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~ 335 (1032)
.+|..+..++...+.++.++..++......|+
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 121
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.73 E-value=20 Score=42.38 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhc
Q 001679 361 EQAKRKELYNQIQQT 375 (1032)
Q Consensus 361 e~~~Rr~l~n~~~el 375 (1032)
-..+|.+|-..+..|
T Consensus 508 nl~ERqkLKs~leKL 522 (527)
T PF15066_consen 508 NLEERQKLKSRLEKL 522 (527)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345777777766654
No 122
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.35 E-value=23 Score=43.15 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHH
Q 001679 285 AENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADS-------IPELNKMVIGVQALVAQCEDF 354 (1032)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l 354 (1032)
....++....++..+..|..++..|+..++....|+..|+.+..++... .++.+.|....+.+......+
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666667788888888888888888888887777666544 345555555555444444333
No 123
>PRK10869 recombination and repair protein; Provisional
Probab=90.08 E-value=54 Score=40.64 Aligned_cols=17 Identities=41% Similarity=0.804 Sum_probs=12.1
Q ss_pred CcceEEEeecccCCCcceEe
Q 001679 452 GYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 452 G~N~~IfaYGqTGSGKTyTm 471 (1032)
|.|+ -.|.||||||-.|
T Consensus 23 glnv---itGetGaGKS~il 39 (553)
T PRK10869 23 GMTV---ITGETGAGKSIAI 39 (553)
T ss_pred CcEE---EECCCCCChHHHH
Confidence 5554 4699999996533
No 124
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.05 E-value=76 Score=41.72 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001679 300 KYWAAAVSDLQEKVKMMKKEHSQLSREAHECAD 332 (1032)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~ 332 (1032)
.++..++..|+++|....+.+.+++..+.+...
T Consensus 1228 ~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~ 1260 (1758)
T KOG0994|consen 1228 AQLASATESLRRQLQALTEDLPQEEETLSDITN 1260 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 344445555555555555555555544444433
No 125
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.98 E-value=48 Score=45.40 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001679 873 RQKIKELEDKLKEQE 887 (1032)
Q Consensus 873 ~~k~~~Le~~l~~~~ 887 (1032)
+.++.+++.++..+.
T Consensus 1027 ~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 1027 ENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 126
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.97 E-value=0.14 Score=57.30 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.4
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
.|++..+++-.++.|+..|+||||||.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 578888999999999999999999999984
No 127
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.81 E-value=11 Score=39.57 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 303 AAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVIGVQALVAQCEDFKMKYSEEQAKRKE 367 (1032)
Q Consensus 303 ~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Rr~ 367 (1032)
...+..+....+.+..++..+..+..+....+ ......+..+...++.+.++..+.+.++.+
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEV---QELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455555544444442222222222 222233333334444455555555544443
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.72 E-value=29 Score=39.45 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 001679 253 LTAANEQLEKVRMELDNKAF 272 (1032)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~ 272 (1032)
+.++|.++..+..+|..+.+
T Consensus 208 L~~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTE 227 (306)
T ss_pred hhhcchhHHHHHHHHHHHHH
Confidence 44555555555555554443
No 129
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.51 E-value=32 Score=42.68 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001679 841 SESHSISLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQ 888 (1032)
Q Consensus 841 ~e~~~~~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~ 888 (1032)
+......+....++++.++............|++++..+++++.....
T Consensus 320 yg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~ 367 (563)
T TIGR00634 320 YGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAV 367 (563)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556666666665444444445555555555555444333
No 130
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.37 E-value=70 Score=42.36 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=5.2
Q ss_pred HHhhhcCCCEE
Q 001679 370 NQIQQTRGNIR 380 (1032)
Q Consensus 370 n~~~elkgnIr 380 (1032)
|.|.+..|.||
T Consensus 205 NvLld~~GHik 215 (1317)
T KOG0612|consen 205 NVLLDKSGHIK 215 (1317)
T ss_pred eeEecccCcEe
Confidence 34444455554
No 131
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.19 E-value=38 Score=43.21 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=11.9
Q ss_pred ecCCcEEEEeCChHHHHHHHHh
Q 001679 539 HVPGIVEANVNSIREAWNVLQT 560 (1032)
Q Consensus 539 ~v~gl~e~~V~s~~e~~~ll~~ 560 (1032)
|-.|+.-+.+.=...+...+..
T Consensus 385 H~~GvH~V~L~wl~~L~~fl~~ 406 (717)
T PF10168_consen 385 HNAGVHSVTLPWLSALQEFLES 406 (717)
T ss_pred ecCccEEEEeccHHHHHHHhcc
Confidence 3456666776544444444443
No 132
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.03 E-value=77 Score=40.60 Aligned_cols=8 Identities=0% Similarity=0.526 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 001679 366 KELYNQIQ 373 (1032)
Q Consensus 366 r~l~n~~~ 373 (1032)
..+|+.+.
T Consensus 166 ~~vF~s~~ 173 (980)
T KOG0980|consen 166 QTVFSSMN 173 (980)
T ss_pred HHHHHHhh
Confidence 33444443
No 133
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.86 E-value=18 Score=42.71 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=7.9
Q ss_pred CCceEEEEEEEEe
Q 001679 578 RSHCMLCIMVRAK 590 (1032)
Q Consensus 578 RSH~If~i~v~~~ 590 (1032)
-.|.+|...|+..
T Consensus 147 ~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 147 VCHLLYVDRVEVT 159 (493)
T ss_pred ceeEEEEEEEEEE
Confidence 4577776666543
No 134
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.66 E-value=29 Score=42.09 Aligned_cols=12 Identities=8% Similarity=0.332 Sum_probs=7.7
Q ss_pred CCceEEEEeecc
Q 001679 162 EEGTVVVRFEGI 173 (1032)
Q Consensus 162 ~dg~L~I~f~~~ 173 (1032)
+++.|+|+|.+.
T Consensus 120 ~s~vi~Is~~~~ 131 (498)
T TIGR03007 120 RDNLFTISYEDK 131 (498)
T ss_pred CCCeEEEEeeCC
Confidence 356788887643
No 135
>PRK06893 DNA replication initiation factor; Validated
Probab=88.60 E-value=0.26 Score=53.54 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=33.1
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
...++||..++.... .- +..+...+-.++|.+++-||++|+||||.+.+
T Consensus 10 ~~~~~fd~f~~~~~~-~~----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 10 IDDETLDNFYADNNL-LL----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCcccccccccCChH-HH----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 346889998865431 11 12222333457888899999999999998754
No 136
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.55 E-value=0.2 Score=59.74 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=27.5
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
...+..++..-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4566788899999999999999999999975
No 137
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=88.49 E-value=19 Score=41.49 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=19.3
Q ss_pred CCCccccccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 194 PQTSHEFLKCNNCAAEIEVPSAQKKLMRIKATEKYEKKIEELNKQF 239 (1032)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~~~~ie~l~~e~ 239 (1032)
|++-.-...|.+-.|+.+ +.-|+| -.+++..|+++++.|..+.
T Consensus 330 ~~~~~~qatCERgfAaME-etHQkk--iEdLQRqHqRELekLreEK 372 (593)
T KOG4807|consen 330 PPGYISQATCERGFAAME-ETHQKK--IEDLQRQHQRELEKLREEK 372 (593)
T ss_pred CccHHHHHHHHhhHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 333333344555545444 233444 2334455555555554444
No 138
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.38 E-value=22 Score=43.34 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=11.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001679 786 QLLERLKGREELCSTLQIKVKELENRLRD 814 (1032)
Q Consensus 786 ~l~~~~~~~~e~~~~l~~~l~ele~~l~~ 814 (1032)
.|+.++.++.-....++.+..+.|++++.
T Consensus 178 DLmaevSeLKLkltalEkeq~e~E~K~R~ 206 (861)
T KOG1899|consen 178 DLMAEVSELKLKLTALEKEQNETEKKLRL 206 (861)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhHHHHHHh
Confidence 33333333333333344344444444443
No 139
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.33 E-value=72 Score=39.18 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001679 845 SISLQHKVKELESKLK----EQERQHVESLMLRQKIKELEDKLKEQ 886 (1032)
Q Consensus 845 ~~~l~~k~~eLe~k~~----~~~~~~~e~~~l~~k~~~Le~~l~~~ 886 (1032)
+.+....+.||+..++ +.++...|.+.|..-+..|+.+|...
T Consensus 412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555554333 22333333444555555555555443
No 140
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.30 E-value=63 Score=38.42 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001679 717 MKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEG 768 (1032)
Q Consensus 717 lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~ 768 (1032)
++..+.....+.........+|+.++..++..+...+..+......++.++.
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~ 94 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3333333333333333334444444444444444333333333333333333
No 141
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.19 E-value=8.1 Score=38.05 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=3.0
Q ss_pred HHHHhhhc
Q 001679 368 LYNQIQQT 375 (1032)
Q Consensus 368 l~n~~~el 375 (1032)
|-+.|+|+
T Consensus 101 L~~Dv~Dl 108 (120)
T PF12325_consen 101 LRADVQDL 108 (120)
T ss_pred HHHHHHHH
Confidence 33333333
No 142
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.04 E-value=33 Score=39.49 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001679 305 AVSDLQEKVKMMKKEHSQLSREAHECADSIPEL 337 (1032)
Q Consensus 305 ~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~ 337 (1032)
.|..++.++.....++...+.++.++...+..+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 143
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.02 E-value=16 Score=40.46 Aligned_cols=58 Identities=22% Similarity=0.409 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhh
Q 001679 232 IEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRY 295 (1032)
Q Consensus 232 ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 295 (1032)
.++|+.=+- ..++..++++..+++++..|-+++-++..+|..++++|....+.....+
T Consensus 5 ~eEWKeGL~------~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~ 62 (307)
T PF10481_consen 5 VEEWKEGLP------TRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY 62 (307)
T ss_pred HhHHhccCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Confidence 355654443 3466778888899999999999998988899999998887666555533
No 144
>PRK12377 putative replication protein; Provisional
Probab=87.82 E-value=0.2 Score=55.34 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=36.1
Q ss_pred ecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 424 KFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 424 ~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
+||........|..++..+..++..+..+. ..|+-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 455544444567778887888888877654 4678899999999999865
No 145
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.70 E-value=1.1e+02 Score=40.63 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 001679 878 ELEDKLKEQEQQFQCRLSRDFADLIKY 904 (1032)
Q Consensus 878 ~Le~~l~~~~~~~q~~~~~~~~~~~~~ 904 (1032)
.++.++....+.++..+.+..++..+.
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666664444
No 146
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.68 E-value=49 Score=37.74 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001679 284 QAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNK 339 (1032)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~ 339 (1032)
....|+.+-.++..+...+..++..+..+..++.+|..+|.+|+.+...+.++|+.
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666777777777788888888888888888887777776666555553
No 147
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.60 E-value=0.13 Score=59.02 Aligned_cols=55 Identities=29% Similarity=0.488 Sum_probs=34.4
Q ss_pred hhhhcchHHHHHHhcCcceEEEeecccCCCcceEeeccC-----CCCchhHhHHHHHHHHH
Q 001679 437 DVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTE-----QSRGVNYRTLEQLFEIA 492 (1032)
Q Consensus 437 ~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~-----~~~GIipral~~LF~~~ 492 (1032)
.++..+...|..+-.+. -.|+-||+||+||||.+.+-. ....++.....+||..+
T Consensus 167 ~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 167 KILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred HHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 34444566777666544 569999999999999886521 12334444445555544
No 148
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.46 E-value=33 Score=39.39 Aligned_cols=7 Identities=14% Similarity=0.510 Sum_probs=3.7
Q ss_pred hhccccC
Q 001679 660 LLQDSLG 666 (1032)
Q Consensus 660 LLqdsLg 666 (1032)
|++.|+.
T Consensus 100 LF~EY~~ 106 (312)
T smart00787 100 LFKEYFS 106 (312)
T ss_pred HHHHHHc
Confidence 5555554
No 149
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.40 E-value=64 Score=42.25 Aligned_cols=7 Identities=43% Similarity=0.415 Sum_probs=3.2
Q ss_pred hHHhhHH
Q 001679 632 SLSALGD 638 (1032)
Q Consensus 632 SL~aLg~ 638 (1032)
.|++|--
T Consensus 377 TlSTLEY 383 (1041)
T KOG0243|consen 377 TLSTLEY 383 (1041)
T ss_pred HHHHHHH
Confidence 3455543
No 150
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.39 E-value=66 Score=40.00 Aligned_cols=22 Identities=9% Similarity=0.416 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001679 305 AVSDLQEKVKMMKKEHSQLSRE 326 (1032)
Q Consensus 305 ~~~~l~~~~~~~~~e~~~l~~e 326 (1032)
.+..+...+..+..++..+..+
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~ 127 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEE 127 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 151
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.29 E-value=50 Score=36.22 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=15.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 287 NLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLS 324 (1032)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~ 324 (1032)
++..+..+++....+....+..|+..+...++-..++.
T Consensus 74 E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~ 111 (333)
T KOG1853|consen 74 EQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLR 111 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333333
No 152
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.21 E-value=66 Score=37.46 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=30.4
Q ss_pred hHHhhHHHHHHHhcC------CCcccCCCCcchhhhccccC-CCcceEEEEEeCCCCcChHhHHHHHHHHHH
Q 001679 632 SLSALGDVIYSLATK------SNHIPYRNSKLTHLLQDSLG-GDSKTLMFVQISPSEQDLSETLSSLNFATQ 696 (1032)
Q Consensus 632 SL~aLg~VI~aL~~~------~~hiPyRdSKLT~LLqdsLg-Gnskt~mI~~ISP~~~~~~ETl~TL~fA~r 696 (1032)
+...||.||..++.. ..|.. .|| -.-.|.+|++|-...---.-||.-|-.+++
T Consensus 8 ~vlvLgGVIA~~gD~ig~kvGkarLr------------lF~LRPkqTAvlvtvltG~liSA~tLailf~~~~ 67 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKVGKARLR------------LFGLRPKQTAVLVTVLTGMLISAATLAILFLLNR 67 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhhhHHHHh------------HhccCcccceeehhhhhcchhhHHHHHHHHHhhh
Confidence 567899999988752 11211 122 134677777776554444556666655543
No 153
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.11 E-value=61 Score=37.01 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001679 869 SLMLRQKIKELEDKLKEQEQ 888 (1032)
Q Consensus 869 ~~~l~~k~~~Le~~l~~~~~ 888 (1032)
+..|+.|+++|-.+++.+.|
T Consensus 203 I~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 203 IGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766655
No 154
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=87.01 E-value=45 Score=35.42 Aligned_cols=48 Identities=31% Similarity=0.456 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHH
Q 001679 842 ESHSISLQHKVKELESKLKEQERQHV----ESLMLRQKIKELEDKLKEQEQQ 889 (1032)
Q Consensus 842 e~~~~~l~~k~~eLe~k~~~~~~~~~----e~~~l~~k~~~Le~~l~~~~~~ 889 (1032)
......|+..++.+..|+++.+..-+ -...|+..+.+|+.++......
T Consensus 136 ~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 136 EQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 33444555566666666654433211 1245666777777766555443
No 155
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.00 E-value=0.59 Score=55.00 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=14.6
Q ss_pred ceEEEeecccCCCcceEe
Q 001679 454 NVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm 471 (1032)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345888999999999654
No 156
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.90 E-value=35 Score=34.00 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 001679 841 SESHSISLQHKVKELESKLKE 861 (1032)
Q Consensus 841 ~e~~~~~l~~k~~eLe~k~~~ 861 (1032)
++.+...|+..+.+++.++.+
T Consensus 96 w~~qk~~le~e~~~~~~r~~d 116 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIED 116 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 157
>PRK12704 phosphodiesterase; Provisional
Probab=86.59 E-value=25 Score=43.15 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCcchhhhccccCC
Q 001679 939 HGSILPRGNGHQHETRKKRDSRS 961 (1032)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~ 961 (1032)
-|++=++|---..+.|.-|-+-.
T Consensus 216 lp~d~mkgriigreGrnir~~e~ 238 (520)
T PRK12704 216 LPNDEMKGRIIGREGRNIRALET 238 (520)
T ss_pred cCCchhhcceeCCCcchHHHHHH
Confidence 34555555555666666665544
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.57 E-value=0.22 Score=61.38 Aligned_cols=52 Identities=25% Similarity=0.432 Sum_probs=36.6
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
...|+||..+-... +...|..+..++...-.+||. ||-||.+|+||||.+.+
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 35799998664443 445665555555544456786 89999999999998854
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.57 E-value=0.2 Score=58.98 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=28.7
Q ss_pred eeecceEECCCCCchhhhhcc-hHHHH-HHhc--C--cceEEEeecccCCCcceEe
Q 001679 422 TFKFDRVFTPNDGQVDVFADA-SPLVI-SVLD--G--YNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 422 ~F~FD~VF~~~~tQ~~vf~~v-~plV~-~~l~--G--~N~~IfaYGqTGSGKTyTm 471 (1032)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 466666666544333333333 34332 2332 2 2346888999999999875
No 160
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.55 E-value=99 Score=38.86 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhhhhH
Q 001679 716 KMKVMLEKARQDSRSKD 732 (1032)
Q Consensus 716 ~lk~~l~~~~~e~~~~~ 732 (1032)
.|...+..++.+.....
T Consensus 84 ~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555554443333
No 161
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=86.53 E-value=1e+02 Score=39.07 Aligned_cols=6 Identities=50% Similarity=0.933 Sum_probs=2.8
Q ss_pred EEecCC
Q 001679 383 CRCRPL 388 (1032)
Q Consensus 383 ~RvRP~ 388 (1032)
|--||+
T Consensus 39 ~nsrpl 44 (861)
T PF15254_consen 39 SNSRPL 44 (861)
T ss_pred cCCCcC
Confidence 344554
No 162
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=86.46 E-value=68 Score=40.47 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=11.2
Q ss_pred cccccccccccccccccccccc
Q 001679 1010 KRINRDQVQGIKERDTKKKIWS 1031 (1032)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~ 1031 (1032)
-||.||-..| +++.-+|.
T Consensus 818 lRVyRdd~~~----stwl~~wa 835 (1265)
T KOG0976|consen 818 LRVYRDDAEA----STWLLGWA 835 (1265)
T ss_pred eeeeccccch----hHHHHHHH
Confidence 5677776554 66666663
No 163
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.38 E-value=0.28 Score=53.58 Aligned_cols=49 Identities=10% Similarity=0.245 Sum_probs=32.6
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
+..|+||.-+.. .+...+..+..++. ......++-||++|+||||.+.+
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 345788866654 45666655544432 22234789999999999999854
No 164
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.80 E-value=1.3e+02 Score=39.38 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=17.5
Q ss_pred EeecccCCCcceEeec----cCCCCchhHhH
Q 001679 458 FAYGQTGTGKTFTMEG----TEQSRGVNYRT 484 (1032)
Q Consensus 458 faYGqTGSGKTyTm~G----~~~~~GIipra 484 (1032)
|-.|+.||||+....+ -.+.|-++-|+
T Consensus 46 mIiGpNGSGKSSiVcAIcLglgG~Pk~lGRa 76 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAICLGLGGKPKLLGRA 76 (1072)
T ss_pred eEECCCCCCchHHHHHHHHHcCCChhhccch
Confidence 6679999999987643 22344455444
No 165
>PRK06620 hypothetical protein; Validated
Probab=85.79 E-value=0.38 Score=51.90 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=34.2
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcCcc---eEEEeecccCCCcceEee
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYN---VCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N---~~IfaYGqTGSGKTyTm~ 472 (1032)
...|+||..+...+ +...|..+..+... -|+| -.+|-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 35689998776555 34566665544431 1444 358999999999999885
No 166
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.76 E-value=1.3e+02 Score=39.27 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001679 870 LMLRQKIKELEDKLKEQEQQFQCRLSRDFA 899 (1032)
Q Consensus 870 ~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~ 899 (1032)
..|+..+..+++.|...+..+...+.+...
T Consensus 477 ~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~ 506 (1200)
T KOG0964|consen 477 KKLRSLIANLEEDLSRAEKNLRATMNRSVA 506 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 567888888888888888888887775444
No 167
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.66 E-value=25 Score=34.69 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=14.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001679 785 SQLLERLKGREELCSTLQIKVKELENRLRD 814 (1032)
Q Consensus 785 ~~l~~~~~~~~e~~~~l~~~l~ele~~l~~ 814 (1032)
+.+++.+-++.|.+.+|+..+.+++..++.
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555554444443
No 168
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.57 E-value=5.1 Score=42.56 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001679 227 KYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELD 268 (1032)
Q Consensus 227 ~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (1032)
..+..+..|..++..-.+.+-+.-.++..++.++..+..++.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~ 112 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS 112 (194)
T ss_dssp ------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHH
Confidence 334445555555543344445555556666666655555443
No 169
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.30 E-value=42 Score=37.46 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=7.6
Q ss_pred cccccccCcccc
Q 001679 198 HEFLKCNNCAAE 209 (1032)
Q Consensus 198 ~~~~~~~~~~~~ 209 (1032)
...+.|.+|...
T Consensus 9 ~~~~~C~~C~~~ 20 (302)
T PF10186_consen 9 RRRFYCANCVNN 20 (302)
T ss_pred CCCeECHHHHHH
Confidence 345678888543
No 170
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.95 E-value=31 Score=42.36 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=11.4
Q ss_pred CCCCCCCCCCcchhhhccccCC
Q 001679 940 GSILPRGNGHQHETRKKRDSRS 961 (1032)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~ 961 (1032)
|++=++|---..+.|.-|-+-.
T Consensus 211 p~d~~kgriigreGrnir~~e~ 232 (514)
T TIGR03319 211 PNDEMKGRIIGREGRNIRALET 232 (514)
T ss_pred CChhhhccccCCCcchHHHHHH
Confidence 4444455555556555554443
No 171
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.93 E-value=94 Score=37.12 Aligned_cols=17 Identities=6% Similarity=0.208 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhHh
Q 001679 755 TYKNQQEKVKELEGQVS 771 (1032)
Q Consensus 755 ~~~~~~e~~~~le~~~~ 771 (1032)
.+++++..+...|.++.
T Consensus 331 ~l~kl~~eie~kEeei~ 347 (622)
T COG5185 331 KLEKLKSEIELKEEEIK 347 (622)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 172
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.91 E-value=44 Score=40.13 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 301 YWAAAVSDLQEKVKMMKKEHSQLS 324 (1032)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~e~~~l~ 324 (1032)
.+-+.|-.++++++.+..|...+.
T Consensus 237 kLlsql~d~qkk~k~~~~Ekeel~ 260 (596)
T KOG4360|consen 237 KLLSQLVDLQKKIKYLRHEKEELD 260 (596)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344456666666666555544443
No 173
>PRK08116 hypothetical protein; Validated
Probab=84.81 E-value=0.4 Score=53.50 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=36.1
Q ss_pred eeecceEECCCCCchhhhhcchHHHHHHhc--CcceEEEeecccCCCcceEeec
Q 001679 422 TFKFDRVFTPNDGQVDVFADASPLVISVLD--GYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 422 ~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~--G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.++||... .+..+...|..+...+..+.. +.|..++-||.+||||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 35666543 345566677777777777654 3456799999999999998754
No 174
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.77 E-value=1.4e+02 Score=38.99 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=10.1
Q ss_pred HHHHHHHhHHhhHHHHHHH
Q 001679 625 EAQNINRSLSALGDVIYSL 643 (1032)
Q Consensus 625 E~~~INkSL~aLg~VI~aL 643 (1032)
|-..|-+.|.+|..-|..|
T Consensus 685 ~~~~~q~el~~le~eL~~l 703 (1174)
T KOG0933|consen 685 ELRAIQKELEALERELKSL 703 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555566655555555
No 175
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.76 E-value=48 Score=33.62 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001679 302 WAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNK 339 (1032)
Q Consensus 302 ~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~ 339 (1032)
+...+..|...+..++.|...|..+....+..+.+|..
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444444444443
No 176
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.48 E-value=0.34 Score=57.94 Aligned_cols=51 Identities=24% Similarity=0.454 Sum_probs=34.8
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
...|+||.-+.. .++...|..+..++.. -..||. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 457999987743 3455566655554443 123665 99999999999998753
No 177
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.45 E-value=0.55 Score=51.76 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=33.9
Q ss_pred eecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 423 FKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 423 F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.+||........|..++..+...+..+..|+ ..++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 4455443334456667777766666655443 3688999999999998865
No 178
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.42 E-value=81 Score=35.98 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 847 SLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQQF 890 (1032)
Q Consensus 847 ~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~~ 890 (1032)
.|..+|..|+....... .+...|+.++.+|+..|..-++.+
T Consensus 139 kL~k~i~~Le~e~~~~q---~~le~Lr~EKVdlEn~LE~EQE~l 179 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQ---EELERLRREKVDLENTLEQEQEAL 179 (310)
T ss_pred HHHHHHHHHHHHHHHhH---HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455555544332211 123355555555666555544433
No 179
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.33 E-value=73 Score=35.54 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=33.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001679 287 NLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADS 333 (1032)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~ 333 (1032)
.+.++..+|+.+.......+..|+.++..+.+.+.....|++-+.-+
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY 110 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY 110 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777778888887777777777777666533
No 180
>PRK05642 DNA replication initiation factor; Validated
Probab=84.29 E-value=0.49 Score=51.69 Aligned_cols=51 Identities=16% Similarity=0.402 Sum_probs=29.7
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcCc-ceEEEeecccCCCcceEeec
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGY-NVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~-N~~IfaYGqTGSGKTyTm~G 473 (1032)
...|+||.-+... +...+..+..+.... .++ ...++-||++|+||||-+.+
T Consensus 13 ~~~~tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 13 RDDATFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CCcccccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHH
Confidence 3468899877432 233333332222211 122 35689999999999998754
No 181
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=84.27 E-value=90 Score=36.39 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 001679 871 MLRQKIKELED 881 (1032)
Q Consensus 871 ~l~~k~~~Le~ 881 (1032)
-|+++..+||.
T Consensus 270 ~leqeva~le~ 280 (499)
T COG4372 270 RLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 182
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.95 E-value=0.4 Score=56.63 Aligned_cols=53 Identities=25% Similarity=0.380 Sum_probs=33.4
Q ss_pred CceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 419 TRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 419 ~~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
-...|+||.... ...+...|..+..+...--..|| .+|-||++|+||||.+..
T Consensus 103 l~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 103 LNPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 346789998443 23455566555555443212244 478899999999998743
No 183
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.65 E-value=0.43 Score=57.15 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=34.3
Q ss_pred CceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 419 TRKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 419 ~~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
-...|+||.-... ..+...|..+..+...--..|| .+|-||++|+||||.+..
T Consensus 115 l~~~~tfd~fv~g-~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 115 LNPKYTFDNFVVG-KSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCCcccccccC-CCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 3467889884432 3455566655555543223345 478899999999998854
No 184
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=83.43 E-value=88 Score=35.60 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEE
Q 001679 347 LVAQCEDFKMKYSEEQAKRKELYNQIQQTRGNIRV 381 (1032)
Q Consensus 347 ~~~~~~~l~~~~~~e~~~Rr~l~n~~~elkgnIrV 381 (1032)
+...++.|+..++.-+..|-.|+-.+.++.++|.+
T Consensus 297 lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 297 LQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 44556677778888899999999999999999988
No 185
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=83.36 E-value=55 Score=33.24 Aligned_cols=89 Identities=13% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001679 226 EKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAA 305 (1032)
Q Consensus 226 ~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 305 (1032)
.-|+.+|+.-+.++. +..+..+-.+++....|..++.+|+. +..=...+...++..
T Consensus 37 ~AkEeeIErkKmeVr---ekVq~~LgrveEetkrLa~ireeLE~---------------------l~dP~RkEv~~vRkk 92 (159)
T PF04949_consen 37 RAKEEEIERKKMEVR---EKVQAQLGRVEEETKRLAEIREELEV---------------------LADPMRKEVEMVRKK 92 (159)
T ss_pred HhHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHh---------------------hccchHHHHHHHHHH
Confidence 344556665555553 23344444555555555555555442 222122223334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001679 306 VSDLQEKVKMMKKEHSQLSREAHECADSIPELN 338 (1032)
Q Consensus 306 ~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~ 338 (1032)
|+....+|+.+..-+..-..|..++.+.+.+.+
T Consensus 93 ID~vNreLkpl~~~cqKKEkEykealea~nEkn 125 (159)
T PF04949_consen 93 IDSVNRELKPLGQSCQKKEKEYKEALEAFNEKN 125 (159)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555555555555555544444
No 186
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.24 E-value=32 Score=41.72 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhh
Q 001679 222 IKATEKYEKKIEELNKQFQLK-------TNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSR 294 (1032)
Q Consensus 222 ~k~~~~~~~~ie~l~~e~~~~-------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 294 (1032)
+....-|..+|.+|..++|.- ..+|+.....+....++.+.+..+|.. ....+..-.++|.+-..-
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~-------a~~~i~~LqDEL~TTr~N 484 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKE-------ANQNISRLQDELETTRRN 484 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 456789999999999998821 235555555555554444444444432 233344444444444445
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 295 YECDKKYWAAAVSDLQEKVKMMKKEHSQL 323 (1032)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~l 323 (1032)
|+.....+..-|-.|.+++...+.+|..|
T Consensus 485 YE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 485 YEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444444444444444444
No 187
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.20 E-value=85 Score=38.67 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhhHH--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhH
Q 001679 218 KLMRIKATEKYEKKIEELNKQFQ----LKTNE--------------CHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQ 279 (1032)
Q Consensus 218 k~~~~k~~~~~~~~ie~l~~e~~----~~~~e--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 279 (1032)
+.+..++.. ....+..|+.++. .+... ....-..|.+.+..|.+...++........+|..
T Consensus 238 k~Le~kL~~-a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ 316 (522)
T PF05701_consen 238 KDLESKLAE-ASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRS 316 (522)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 280 TVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVIGVQALVAQCEDFKMKYS 359 (1032)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 359 (1032)
.+++...++..+..+... ....+..|..++..++.++..+..+-...... +..+...++.+..+.+..+....
T Consensus 317 ELe~~K~el~~lke~e~~----a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~---~~~l~~~Lqql~~Eae~Ak~ea~ 389 (522)
T PF05701_consen 317 ELEKEKEELERLKEREKE----ASSEVSSLEAELNKTRSELEAAKAEEEKAKEA---MSELPKALQQLSSEAEEAKKEAE 389 (522)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh---HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhcC
Q 001679 360 EEQAKRKELYNQIQQTR 376 (1032)
Q Consensus 360 ~e~~~Rr~l~n~~~elk 376 (1032)
....+..++-.++...+
T Consensus 390 ~~~~E~~~~k~E~e~~k 406 (522)
T PF05701_consen 390 EAKEEVEKAKEEAEQTK 406 (522)
T ss_pred HHHHHHHHHHHHHHHHH
No 188
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.09 E-value=74 Score=40.70 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=9.1
Q ss_pred CCceEEEEEEEee
Q 001679 101 PPGHYYVDLHFAE 113 (1032)
Q Consensus 101 ~~G~Y~VrLhFaE 113 (1032)
..|-+.|.|+|..
T Consensus 386 ~~GvH~V~L~wl~ 398 (717)
T PF10168_consen 386 NAGVHSVTLPWLS 398 (717)
T ss_pred cCccEEEEeccHH
Confidence 4467778887766
No 189
>PRK02224 chromosome segregation protein; Provisional
Probab=83.06 E-value=1.6e+02 Score=38.43 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=5.4
Q ss_pred CCceEEEEEEE
Q 001679 101 PPGHYYVDLHF 111 (1032)
Q Consensus 101 ~~G~Y~VrLhF 111 (1032)
..+.|.|.-.|
T Consensus 77 ~~~~~~i~r~~ 87 (880)
T PRK02224 77 AGGEYHIERRV 87 (880)
T ss_pred CCEEEEEEEEE
Confidence 33456655444
No 190
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.75 E-value=48 Score=36.98 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=5.3
Q ss_pred HHHHHHHHhhh
Q 001679 364 KRKELYNQIQQ 374 (1032)
Q Consensus 364 ~Rr~l~n~~~e 374 (1032)
.|+.+..++..
T Consensus 145 ~r~~l~~~l~~ 155 (302)
T PF10186_consen 145 RRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 191
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.50 E-value=0.47 Score=56.89 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=32.7
Q ss_pred eeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 422 TFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 422 ~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.|+||..+... ++...|..+..++..--..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999866544 345566555555432111245 478999999999998854
No 192
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=82.38 E-value=1.1 Score=52.87 Aligned_cols=51 Identities=27% Similarity=0.494 Sum_probs=30.9
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcC-cceEEEeecccCCCcceEeec
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDG-YNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G-~N~~IfaYGqTGSGKTyTm~G 473 (1032)
...|+||.-..... +.-.|..+..+ ...-.+ || -||-||.+|+||||-|..
T Consensus 81 ~~~ytFdnFv~g~~-N~~A~aa~~~v-a~~~g~~~n-plfi~G~~GlGKTHLl~A 132 (408)
T COG0593 81 NPKYTFDNFVVGPS-NRLAYAAAKAV-AENPGGAYN-PLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCchhheeeCCc-hHHHHHHHHHH-HhccCCcCC-cEEEECCCCCCHHHHHHH
Confidence 45699998555444 33333322222 222222 55 478999999999999964
No 193
>PRK01156 chromosome segregation protein; Provisional
Probab=82.24 E-value=1.8e+02 Score=38.26 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.1
Q ss_pred EEEeecccCCCcceEe
Q 001679 456 CIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm 471 (1032)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5567899999999764
No 194
>PRK00106 hypothetical protein; Provisional
Probab=82.20 E-value=1.1e+02 Score=37.75 Aligned_cols=22 Identities=23% Similarity=0.052 Sum_probs=10.3
Q ss_pred CCCCCCCCCCcchhhhccccCC
Q 001679 940 GSILPRGNGHQHETRKKRDSRS 961 (1032)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~ 961 (1032)
|++=++|---..+.|.-|-+-.
T Consensus 232 p~demkGriIGreGrNir~~E~ 253 (535)
T PRK00106 232 PDDNMKGRIIGREGRNIRTLES 253 (535)
T ss_pred CChHhhcceeCCCcchHHHHHH
Confidence 3444444444555555544433
No 195
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.09 E-value=1.7e+02 Score=38.07 Aligned_cols=72 Identities=28% Similarity=0.346 Sum_probs=39.9
Q ss_pred CCCceEEEEEEEEeecCCCceeeeeeeEeecCCCcccCCCCchhhhHHHHHHHHHhHHhhHHHHHHHhcCCCcccCCCCc
Q 001679 577 SRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERLTRTDVQGDRLKEAQNINRSLSALGDVIYSLATKSNHIPYRNSK 656 (1032)
Q Consensus 577 SRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~s~~~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hiPyRdSK 656 (1032)
+|.|-+=+|++.+.... ..|-|+ +|.+-.. ..||.=-.+.|.+-..|+..-..|..-...|--+|-+
T Consensus 634 ak~~~ln~ITl~GDqvs----kkG~lT----gGy~D~k-----rsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~ 700 (1200)
T KOG0964|consen 634 AKKHELNCITLSGDQVS----KKGVLT----GGYEDQK-----RSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQK 700 (1200)
T ss_pred HHhcCCCeEEeccceec----ccCCcc----ccchhhh-----hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777887654321 223331 3333221 2455556677777777777777776544445555555
Q ss_pred chhhh
Q 001679 657 LTHLL 661 (1032)
Q Consensus 657 LT~LL 661 (1032)
.|.++
T Consensus 701 i~q~~ 705 (1200)
T KOG0964|consen 701 IDQLN 705 (1200)
T ss_pred HHHHH
Confidence 55554
No 196
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.88 E-value=0.83 Score=48.88 Aligned_cols=47 Identities=19% Similarity=0.485 Sum_probs=32.1
Q ss_pred eeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 421 KTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 421 ~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..++||....+ .+..++..+..++. .+....|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 45778776632 44555555544432 4567789999999999999863
No 197
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=81.69 E-value=29 Score=35.91 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001679 302 WAAAVSDLQEKV--KMMKKEHSQLSREAHECADSIPELNKMVIGVQ-ALVAQCEDFKMKYSEEQAKRKELYNQIQQ 374 (1032)
Q Consensus 302 ~~~~~~~l~~~~--~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~e~~~Rr~l~n~~~e 374 (1032)
+.+.|..|...| ..+.+++..|..++....+.+..+..-...+. +-..+..+...+|..+-..||++||.|-+
T Consensus 105 veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 105 VEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444432 34445555555544444444333332111111 11233445566778888889999999865
No 198
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.48 E-value=1.7e+02 Score=37.66 Aligned_cols=11 Identities=9% Similarity=-0.236 Sum_probs=4.2
Q ss_pred EEEeCCCCcCh
Q 001679 674 FVQISPSEQDL 684 (1032)
Q Consensus 674 I~~ISP~~~~~ 684 (1032)
|-.-++++.-.
T Consensus 159 Is~~~~dP~~A 169 (754)
T TIGR01005 159 IEFRSEDPKLA 169 (754)
T ss_pred EEEecCCHHHH
Confidence 33334443333
No 199
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=81.43 E-value=1.1e+02 Score=39.16 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=27.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001679 213 PSAQKKLMRIKATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQ 273 (1032)
Q Consensus 213 ~~~~~k~~~~k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1032)
.|..-.-+.+.+..-|-+.--+-+.+- -.+-..=..+++.++..+|......++....+
T Consensus 238 dP~~Aa~ilN~la~~Yi~~~l~~k~~~--a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 238 DPQLITRILNSIANNYLQQNIARQAAQ--DSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666777777775533322111 11111112233455555555555555544443
No 200
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=81.40 E-value=1.4e+02 Score=36.40 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001679 780 SDKQASQLLERLKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERESESHSISLQHKVKELESKL 859 (1032)
Q Consensus 780 ~e~~~~~l~~~~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~ 859 (1032)
++.....+...++.++..+..+..++.-.++.|..++...........+...+.+..-..+.+.+...+++|+..|-..+
T Consensus 349 le~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI 428 (531)
T PF15450_consen 349 LEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQI 428 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34444555566666666677777766666666666666555544444444444444444444444445555554444433
No 201
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.38 E-value=1.6e+02 Score=37.08 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 001679 872 LRQKIKELEDK 882 (1032)
Q Consensus 872 l~~k~~~Le~~ 882 (1032)
|+.++..|+.+
T Consensus 280 LqeE~e~Lqsk 290 (716)
T KOG4593|consen 280 LQEELEGLQSK 290 (716)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 202
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.38 E-value=7 Score=42.98 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=45.9
Q ss_pred eecceEECCCCCchhhhhcc-hHHHHHHhc---Ccc--eEEEeecccCCCcceEee--------------ccC---CCCc
Q 001679 423 FKFDRVFTPNDGQVDVFADA-SPLVISVLD---GYN--VCIFAYGQTGTGKTFTME--------------GTE---QSRG 479 (1032)
Q Consensus 423 F~FD~VF~~~~tQ~~vf~~v-~plV~~~l~---G~N--~~IfaYGqTGSGKTyTm~--------------G~~---~~~G 479 (1032)
.++..|=+-+..-++|-+.+ .||.+.-|- |.. -.|+.||+.|+|||-..- |+. .--|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 34444545444445555555 566665331 332 348899999999974321 211 1236
Q ss_pred hhHhHHHHHHHHHHhcCC
Q 001679 480 VNYRTLEQLFEIAKERSE 497 (1032)
Q Consensus 480 Iipral~~LF~~~~~~~~ 497 (1032)
==||.++++|+...+...
T Consensus 232 egprmvrdvfrlakenap 249 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAP 249 (408)
T ss_pred cCcHHHHHHHHHHhccCC
Confidence 669999999998877654
No 203
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.35 E-value=1.6e+02 Score=37.26 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 001679 751 YKDQTYKNQQEKVKEL 766 (1032)
Q Consensus 751 ~~~~~~~~~~e~~~~l 766 (1032)
...+.+..+++.+..|
T Consensus 458 t~gsA~ed~Qeqn~kL 473 (698)
T KOG0978|consen 458 TIGSAFEDMQEQNQKL 473 (698)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 204
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.20 E-value=34 Score=39.99 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhh
Q 001679 254 TAANEQLEKVRMELDNKAFQTL 275 (1032)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~ 275 (1032)
.+...+|.++..++...++...
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444
No 205
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.17 E-value=0.93 Score=48.86 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=31.2
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
...|+||.+++.. ...++..+..++.. .+.+..++-||++||||||.+.
T Consensus 12 ~~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 3468899987322 23344444443331 2345678999999999999764
No 206
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=81.09 E-value=86 Score=35.34 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001679 251 MSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHEC 330 (1032)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~ 330 (1032)
+--++.|.||.++.-- ++...++-+.+.|..-..+|-.........+-.+.++++.+..++.-++...-..
T Consensus 154 ~iqt~vNsELK~LlVA---------SvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~erl~iqcdVWrsKFLAs 224 (383)
T KOG4074|consen 154 NIQTKVNSELKRLLVA---------SVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVEDEQSERLRIQCDVWRSKFLAS 224 (383)
T ss_pred HHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 3446677777665432 3344555555544433333333333444455556667777777766665433222
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCCCc
Q 001679 331 ADSIPELN-KMVIGVQALVAQCEDFKMKYSEEQAKRKELYNQIQQTRGNIRVFCRCRPLNK 390 (1032)
Q Consensus 331 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~elkgnIrV~~RvRP~~~ 390 (1032)
.--..||. .....+|.++...+..+.++..-..++--+.-.+|-++-.-..--|+||.+.
T Consensus 225 sVm~dELt~~~~~l~q~l~~~~e~~kq~~vaT~~i~e~~l~~Lq~l~~~s~~~~~~~p~Ta 285 (383)
T KOG4074|consen 225 SVMCDELTSKNEYLLQTLVGIQEAVKQKNVATDEISEFTLLDLQPLFHRSPCEERVRPITA 285 (383)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCchhh
Confidence 11112222 2233455566666667777788888888888888887765555556777654
No 207
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=80.68 E-value=1.3e+02 Score=35.79 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001679 344 VQALVAQCEDFKMKYSEEQAKRKELYNQIQQT 375 (1032)
Q Consensus 344 ~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~el 375 (1032)
+.....++..|++.+.-.+..=..|..++++.
T Consensus 337 l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 337 LNRQRDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555554444444444444443
No 208
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.68 E-value=1.5e+02 Score=38.31 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001679 294 RYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSI 334 (1032)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~ 334 (1032)
++...+.+....+..|+..++.+..|...|+.|++-+.+.+
T Consensus 124 ~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 124 ELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888999999999999999998888877654
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.35 E-value=48 Score=36.39 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001679 225 TEKYEKKIEELNKQF 239 (1032)
Q Consensus 225 ~~~~~~~ie~l~~e~ 239 (1032)
+..|++...++..+.
T Consensus 10 ~~~lek~k~~i~~e~ 24 (230)
T PF10146_consen 10 TLELEKLKNEILQEV 24 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 210
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=80.16 E-value=0.81 Score=52.87 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=25.8
Q ss_pred chhhhhcchHHHHHHhcC-cceEEEeecccCCCcceEe
Q 001679 435 QVDVFADASPLVISVLDG-YNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 435 Q~~vf~~v~plV~~~l~G-~N~~IfaYGqTGSGKTyTm 471 (1032)
.++-++.+...+..++.| ...+++-||++|+|||+++
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 444444455555655544 5568999999999999875
No 211
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.15 E-value=1.2e+02 Score=36.97 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHH
Q 001679 229 EKKIEELNKQFQLKTNECHEA 249 (1032)
Q Consensus 229 ~~~ie~l~~e~~~~~~e~~~~ 249 (1032)
+..|+-|+.+-..+.+|..++
T Consensus 312 er~IerLkeqr~rderE~~Ee 332 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEE 332 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHH
Confidence 344555555544443443333
No 212
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.03 E-value=20 Score=38.73 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 001679 226 EKYEKKIEELNKQF 239 (1032)
Q Consensus 226 ~~~~~~ie~l~~e~ 239 (1032)
.+-++++.+|+.++
T Consensus 96 p~le~el~~l~~~l 109 (206)
T PRK10884 96 PDLENQVKTLTDKL 109 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 213
>PRK09087 hypothetical protein; Validated
Probab=80.02 E-value=0.98 Score=49.15 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=31.9
Q ss_pred ceeeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 420 RKTFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 420 ~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
...|+||.-+...+. ..+|..+ .....-.+..++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~l----~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSLV----DHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCch-HHHHHHH----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence 356889988765443 3355533 22222235568999999999999885
No 214
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=79.93 E-value=0.96 Score=50.16 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=34.3
Q ss_pred eecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 423 FKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 423 F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
|.|..+-.+...+..+|..+..++..+-.|.| ++-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 33333333445678888888888877765555 46699999999998755
No 215
>PLN03188 kinesin-12 family protein; Provisional
Probab=79.48 E-value=1.5e+02 Score=39.83 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 001679 358 YSEEQAKRKELYNQIQQTRG 377 (1032)
Q Consensus 358 ~~~e~~~Rr~l~n~~~elkg 377 (1032)
|.+-+.++|+.-++|..++-
T Consensus 1231 ~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1231 YKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455666666566665554
No 216
>PLN02939 transferase, transferring glycosyl groups
Probab=79.18 E-value=2.2e+02 Score=37.55 Aligned_cols=108 Identities=25% Similarity=0.357 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHH
Q 001679 793 GREELCSTLQIKVKELENRLRDRQQSES-------AIFQQKVKDIENKLKEQERESE------SHSISLQHKVKELESKL 859 (1032)
Q Consensus 793 ~~~e~~~~l~~~l~ele~~l~~~~~~~~-------~~~~~k~~~~e~~l~e~~~~~e------~~~~~l~~k~~eLe~k~ 859 (1032)
..+....-|+.-+.++|.++..-.+... +.+-+|++.++..|.....+.+ .+-+.|++|+.+||.-+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (977)
T PLN02939 261 KLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASL 340 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3444555666666777666543222111 1133444444433332222211 22345677777777776
Q ss_pred HHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001679 860 KEQERQ---HVESLMLRQKIKELEDKLKEQEQQFQCRLSRDFAD 900 (1032)
Q Consensus 860 ~~~~~~---~~e~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~ 900 (1032)
.+..-. .+....++++++-+++.|.....++++...-+..+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (977)
T PLN02939 341 KEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQES 384 (977)
T ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 644322 22235577888888888887777777766555554
No 217
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.17 E-value=1.4e+02 Score=37.61 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 001679 870 LMLRQKIKELED 881 (1032)
Q Consensus 870 ~~l~~k~~~Le~ 881 (1032)
+.|++++.+|.+
T Consensus 247 E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 247 EDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHH
Confidence 345555555553
No 218
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=79.12 E-value=1.5e+02 Score=35.50 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=6.7
Q ss_pred HhHHHHHHHHHHhc
Q 001679 685 SETLSSLNFATQVR 698 (1032)
Q Consensus 685 ~ETl~TL~fA~r~~ 698 (1032)
.|+|..|+-..+=.
T Consensus 316 NEvL~kLk~tn~kQ 329 (527)
T PF15066_consen 316 NEVLQKLKHTNRKQ 329 (527)
T ss_pred HHHHHHHHhhhHHH
Confidence 35555555444433
No 219
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.76 E-value=35 Score=34.00 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 001679 248 EAWMSLTAANEQLEKVRMELDN 269 (1032)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~ 269 (1032)
.-+.++....++|..-...+..
T Consensus 54 ~vs~~l~~tKkhLsqRId~vd~ 75 (126)
T PF07889_consen 54 QVSESLSSTKKHLSQRIDRVDD 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444433333333
No 220
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.74 E-value=1.8e+02 Score=36.11 Aligned_cols=7 Identities=0% Similarity=-0.154 Sum_probs=3.0
Q ss_pred CCCCcch
Q 001679 946 GNGHQHE 952 (1032)
Q Consensus 946 ~~~~~~~ 952 (1032)
|++.++|
T Consensus 358 ssp~v~P 364 (861)
T KOG1899|consen 358 SSPAVSP 364 (861)
T ss_pred CCCCCCC
Confidence 4444443
No 221
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.74 E-value=2.3e+02 Score=37.40 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=26.8
Q ss_pred cCCCcceEEEEEeCCCCcChHhHHHHHHHHHHhccccc
Q 001679 665 LGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRGVEL 702 (1032)
Q Consensus 665 LgGnskt~mI~~ISP~~~~~~ETl~TL~fA~r~~~i~~ 702 (1032)
.+|.+.+.||=+=.-+.+.|.+.|..+.+--+++++-.
T Consensus 92 I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLV 129 (1141)
T KOG0018|consen 92 INGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLV 129 (1141)
T ss_pred hcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEE
Confidence 34556667776666666778888888888877887643
No 222
>PRK08727 hypothetical protein; Validated
Probab=78.40 E-value=1.1 Score=48.78 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=27.8
Q ss_pred eeeecceEECCCCCchhhhhcchHHHHHHhcCcc-eEEEeecccCCCcceEeec
Q 001679 421 KTFKFDRVFTPNDGQVDVFADASPLVISVLDGYN-VCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 421 ~~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N-~~IfaYGqTGSGKTyTm~G 473 (1032)
..|+||.-+...+ + ....+.+ +..|+. -.|+-||++||||||.+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~----~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQA----LAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHH----HHhccCCCeEEEECCCCCCHHHHHHH
Confidence 4578888664433 2 2222222 222332 3599999999999998754
No 223
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.66 E-value=1.8e+02 Score=35.56 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001679 300 KYWAAAVSDLQEKVKMMKKEHSQLSREAHEC 330 (1032)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~ 330 (1032)
..+...+.+++..+...+.|...+.....+.
T Consensus 110 ~eleneLKq~r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 110 LELENELKQLRQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555554444443
No 224
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=77.50 E-value=2.1e+02 Score=36.18 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 286 ENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREA 327 (1032)
Q Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~ 327 (1032)
.+|..++..+......+.++...|+..++.+...+.....++
T Consensus 151 eql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~L 192 (739)
T PF07111_consen 151 EQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKEL 192 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666665554443333
No 225
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=77.46 E-value=1.1 Score=52.22 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=24.1
Q ss_pred hhhhhcchHHHHHHhc-CcceEEEeecccCCCcceEe
Q 001679 436 VDVFADASPLVISVLD-GYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 436 ~~vf~~v~plV~~~l~-G~N~~IfaYGqTGSGKTyTm 471 (1032)
++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3333444455555554 44567899999999999875
No 226
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.36 E-value=1.7e+02 Score=35.12 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHH
Q 001679 301 YWAAAVSDLQEKVKMMKKEHSQLS-------REAHECADSIPELNKMVIGVQALVA 349 (1032)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~e~~~l~-------~e~~~~~~~~~~~~~~~~~~~~~~~ 349 (1032)
.|-.++..|+..+....+|+..|+ ..+......++++..|...-..+-.
T Consensus 327 ~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~r 382 (622)
T COG5185 327 EWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTR 382 (622)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 444455555555544444444443 3333333344555555544433333
No 227
>PRK08939 primosomal protein DnaI; Reviewed
Probab=77.22 E-value=0.76 Score=52.36 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=32.4
Q ss_pred eecceEECCCCCchhhhhcchHHHHHHhcC-cceEEEeecccCCCcceEeec
Q 001679 423 FKFDRVFTPNDGQVDVFADASPLVISVLDG-YNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 423 F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G-~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.+||.+-.....+..++..+...+.....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333334555665555555555433 234699999999999999865
No 228
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.03 E-value=1.1 Score=52.35 Aligned_cols=54 Identities=31% Similarity=0.467 Sum_probs=32.7
Q ss_pred chHHHHHHhcCcceE-EEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEE
Q 001679 442 ASPLVISVLDGYNVC-IFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEV 510 (1032)
Q Consensus 442 v~plV~~~l~G~N~~-IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EI 510 (1032)
+...+..++.|.-.. ++.||.||||||.|+ ..+++.+........ .++|-+.++
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------------~~v~~~l~~~~~~~~-~~yINc~~~ 83 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV--------------KFVMEELEESSANVE-VVYINCLEL 83 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------------HHHHHHHHhhhccCc-eEEEeeeeC
Confidence 344455566555444 999999999998875 456666655433222 344444443
No 229
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=76.95 E-value=1.6e+02 Score=34.55 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001679 870 LMLRQKIKELEDKLKEQEQQFQ 891 (1032)
Q Consensus 870 ~~l~~k~~~Le~~l~~~~~~~q 891 (1032)
..++.++..++.++...+..+.
T Consensus 249 ~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 249 TEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666555544
No 230
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.88 E-value=33 Score=34.15 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=32.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001679 286 ENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVIGVQALV 348 (1032)
Q Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~~~ 348 (1032)
..|..+...+..-|+.+...|..|..+++...+-...+..++.+....+..+...+..++..+
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444455555555566666666665555555555555555555444444444444433
No 231
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.82 E-value=21 Score=36.92 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001679 355 KMKYSEEQAKRKELYN 370 (1032)
Q Consensus 355 ~~~~~~e~~~Rr~l~n 370 (1032)
..++.++-..||+++|
T Consensus 154 ~~~~~k~w~kRKri~k 169 (169)
T PF07106_consen 154 YKKWRKEWKKRKRICK 169 (169)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4456677778888764
No 232
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=76.67 E-value=17 Score=32.65 Aligned_cols=44 Identities=32% Similarity=0.403 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHh
Q 001679 728 SRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQVS 771 (1032)
Q Consensus 728 ~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~~ 771 (1032)
+..+++.|..|.++.+.|..........++.+..++++++.++.
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~ 50 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIK 50 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888776655566666666666666665554
No 233
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.59 E-value=99 Score=36.68 Aligned_cols=12 Identities=0% Similarity=0.005 Sum_probs=5.3
Q ss_pred HHHHhhhcCCCE
Q 001679 368 LYNQIQQTRGNI 379 (1032)
Q Consensus 368 l~n~~~elkgnI 379 (1032)
+|.++.|+..+-
T Consensus 74 y~~~l~ele~~~ 85 (395)
T PF10267_consen 74 YHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHhCC
Confidence 344444444443
No 234
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=76.55 E-value=1.1e+02 Score=32.62 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhHhh
Q 001679 758 NQQEKVKELEGQVSL 772 (1032)
Q Consensus 758 ~~~e~~~~le~~~~~ 772 (1032)
+..+++..++.++..
T Consensus 57 kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 57 KLEEKMEAQEAQLKE 71 (205)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444445544443
No 235
>PRK06526 transposase; Provisional
Probab=76.46 E-value=0.86 Score=50.55 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=17.3
Q ss_pred cCcceEEEeecccCCCcceEeec
Q 001679 451 DGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 451 ~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3444 78899999999999875
No 236
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.40 E-value=28 Score=42.68 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001679 343 GVQALVAQCEDFKMKYSEEQAKRKELYNQIQQTR 376 (1032)
Q Consensus 343 ~~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~elk 376 (1032)
.++.+....+.|+.+|.++...+..|-+++.+++
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677777776666666666666555
No 237
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=75.90 E-value=1.2e+02 Score=32.77 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001679 829 DIENKLKEQERESESHSISLQHKVKEL 855 (1032)
Q Consensus 829 ~~e~~l~e~~~~~e~~~~~l~~k~~eL 855 (1032)
..+..|+....++...+...++++..|
T Consensus 111 ~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 111 KNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 238
>PRK10436 hypothetical protein; Provisional
Probab=75.89 E-value=1.1 Score=54.02 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
..+..++..-++.|+..|+||||||.||+.
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 345566777889999999999999999853
No 239
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=75.74 E-value=1.7e+02 Score=34.45 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=9.4
Q ss_pred HHHHHhhhcCCCEEEEE
Q 001679 367 ELYNQIQQTRGNIRVFC 383 (1032)
Q Consensus 367 ~l~n~~~elkgnIrV~~ 383 (1032)
+++|...+--|.+-|..
T Consensus 328 ry~Ne~~~~g~s~~Va~ 344 (552)
T KOG2129|consen 328 RYLNEFVDFGDSVEVAL 344 (552)
T ss_pred HHHhhhhccCCceeeec
Confidence 45666666555555443
No 240
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=75.29 E-value=1.7e+02 Score=34.19 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=6.5
Q ss_pred hhhcCCCEEEEEE
Q 001679 372 IQQTRGNIRVFCR 384 (1032)
Q Consensus 372 ~~elkgnIrV~~R 384 (1032)
|...+|+.++-|+
T Consensus 136 i~~~~~~~~a~~~ 148 (455)
T KOG3850|consen 136 IRKAKGMTEAMVN 148 (455)
T ss_pred HHHHhcccccccc
Confidence 3344555555555
No 241
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.21 E-value=1.3e+02 Score=36.95 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.2
Q ss_pred HHHHHH
Q 001679 886 QEQQFQ 891 (1032)
Q Consensus 886 ~~~~~q 891 (1032)
.....+
T Consensus 172 ~~~~~~ 177 (514)
T TIGR03319 172 IEEEAK 177 (514)
T ss_pred HHHHHH
Confidence 333333
No 242
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=75.20 E-value=1.1 Score=55.37 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=25.1
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
..+..++..-++.|+..|+||||||.||..
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 355667778889999999999999999854
No 243
>PF13245 AAA_19: Part of AAA domain
Probab=75.06 E-value=1.2 Score=40.16 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=18.7
Q ss_pred HHHHhcCcceEEEeecccCCCcceEeec
Q 001679 446 VISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 446 V~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
|..++. -+..+...|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 455566 344455589999999998743
No 244
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.04 E-value=38 Score=38.94 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=4.4
Q ss_pred CCcceEeecc
Q 001679 465 TGKTFTMEGT 474 (1032)
Q Consensus 465 SGKTyTm~G~ 474 (1032)
.+.+|.++|+
T Consensus 215 ~~~~~~ly~~ 224 (314)
T PF04111_consen 215 DKTTYPLYSS 224 (314)
T ss_dssp TCEEEESS--
T ss_pred CCeEEecccC
Confidence 3555555554
No 245
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.80 E-value=1.2e+02 Score=35.48 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=5.4
Q ss_pred cceeEEEec
Q 001679 91 GNFCYRFND 99 (1032)
Q Consensus 91 g~~sY~fp~ 99 (1032)
..|+|.-|.
T Consensus 117 ~~F~~~~p~ 125 (359)
T PF10498_consen 117 KNFKWKRPI 125 (359)
T ss_pred cCcCccCCC
Confidence 356776663
No 246
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=74.21 E-value=1.5e+02 Score=33.09 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhhhhcCccc
Q 001679 868 ESLMLRQKIKELEDKLKEQEQQFQC----RLSRDFADLIKYTPNE 908 (1032)
Q Consensus 868 e~~~l~~k~~~Le~~l~~~~~~~q~----~~~~~~~~~~~~~~~~ 908 (1032)
++..+++++-.|..+...++...+. ......-..+++||+-
T Consensus 201 ~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvll~rpKCTPDm 245 (258)
T PF15397_consen 201 EIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVLLRRPKCTPDM 245 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHhcCCCCCCCCc
Confidence 4455666666666666665555542 2222222356677753
No 247
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=73.81 E-value=1.3 Score=45.07 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.7
Q ss_pred cceEEEeecccCCCcceEeec
Q 001679 453 YNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKTyTm~G 473 (1032)
...-+...++||||||++|..
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 355566677999999999975
No 248
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=73.78 E-value=92 Score=30.35 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001679 228 YEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAAVS 307 (1032)
Q Consensus 228 ~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 307 (1032)
....+..-+.+++.....+...|..|.....+|..-...++..+.++..-...+.+....- ...+......|.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e-------~k~~~~k~~ei~ 84 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEE-------KKKKEEKEAEIK 84 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3444444455555555666778888888877777766667666554432111111111111 111223444666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 001679 308 DLQEKVKMMKKEHSQLSREAHECAD 332 (1032)
Q Consensus 308 ~l~~~~~~~~~e~~~l~~e~~~~~~ 332 (1032)
.|..++..++.++..+...+..+..
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777666666666655554443
No 249
>PRK08181 transposase; Validated
Probab=73.66 E-value=1.4 Score=49.32 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=26.0
Q ss_pred cCcceEEEeecccCCCcceEeeccC-----CCCchhHhHHHHHHHHHH
Q 001679 451 DGYNVCIFAYGQTGTGKTFTMEGTE-----QSRGVNYRTLEQLFEIAK 493 (1032)
Q Consensus 451 ~G~N~~IfaYGqTGSGKTyTm~G~~-----~~~GIipral~~LF~~~~ 493 (1032)
.|.| |+-||++|+||||-+.+-. ...-++...+.+|+..+.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~ 150 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence 4555 7889999999999987631 111244444555555543
No 250
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.64 E-value=2.7e+02 Score=35.77 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=10.1
Q ss_pred HHHhHHhhHHHHHHHh
Q 001679 629 INRSLSALGDVIYSLA 644 (1032)
Q Consensus 629 INkSL~aLg~VI~aL~ 644 (1032)
|=+|=..+.+||..|.
T Consensus 80 iL~Sr~v~~~VV~~L~ 95 (754)
T TIGR01005 80 ILSSNEILKQVVDKLG 95 (754)
T ss_pred HHccHHHHHHHHHHcC
Confidence 4456666677777665
No 251
>PRK10865 protein disaggregation chaperone; Provisional
Probab=73.53 E-value=12 Score=48.63 Aligned_cols=45 Identities=24% Similarity=0.219 Sum_probs=29.4
Q ss_pred eecceEECCCCCchhhhhcchHHHHHHhcCcc------eEEEeecccCCCcceEe
Q 001679 423 FKFDRVFTPNDGQVDVFADASPLVISVLDGYN------VCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 423 F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N------~~IfaYGqTGSGKTyTm 471 (1032)
.-+.+|+| |...-..+...|..+..|.+ +.++-+|+||+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 44667776 55555555555555443432 57788899999999964
No 252
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.46 E-value=1.1 Score=42.64 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.0
Q ss_pred EEeecccCCCcceEeec
Q 001679 457 IFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm~G 473 (1032)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57789999999999876
No 253
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.46 E-value=1.5 Score=53.17 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=24.8
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
..+..++...++.|+..|+||||||.||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 355667777888999999999999999854
No 254
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.03 E-value=73 Score=38.36 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=14.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhHhhhh
Q 001679 745 LENRAKYKDQTYKNQQEKVKELEGQVSLKS 774 (1032)
Q Consensus 745 le~~~~~~~~~~~~~~e~~~~le~~~~~~~ 774 (1032)
|..+++-.++..+.....|+.+...+.+++
T Consensus 339 L~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq 368 (508)
T KOG3091|consen 339 LRQRLKVQDQEVKQHRIRINAIGERVTELQ 368 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555554443
No 255
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.87 E-value=1.4e+02 Score=32.11 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001679 232 IEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDN 269 (1032)
Q Consensus 232 ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1032)
|.-|+.++..-..+...+...+-.+..+|...+..++.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~ 49 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRN 49 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 33344444322233333333333444444444444433
No 256
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=72.84 E-value=9.7 Score=49.06 Aligned_cols=19 Identities=42% Similarity=0.667 Sum_probs=15.4
Q ss_pred ceEEEeecccCCCcceEee
Q 001679 454 NVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm~ 472 (1032)
|..++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4456778999999999984
No 257
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=72.78 E-value=1.6 Score=55.70 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=24.0
Q ss_pred hhcchHHHHHHhc--CcceEEEeecccCCCcceEe
Q 001679 439 FADASPLVISVLD--GYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 439 f~~v~plV~~~l~--G~N~~IfaYGqTGSGKTyTm 471 (1032)
+..+...+..++. |-+.|||.||+||+|||.|+
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3345556666664 44567899999999999886
No 258
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.68 E-value=95 Score=37.74 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCC
Q 001679 358 YSEEQAKRKELYNQIQQTRGN 378 (1032)
Q Consensus 358 ~~~e~~~Rr~l~n~~~elkgn 378 (1032)
|..-...||.+...+.+|.|.
T Consensus 704 Y~l~~~Q~~~iqsiL~~L~~~ 724 (741)
T KOG4460|consen 704 YILSAYQRKCIQSILKELGEH 724 (741)
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 333344555555555554443
No 259
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=72.41 E-value=2.8e+02 Score=35.29 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=17.2
Q ss_pred ccchhccCCCCCCCCcCCCCCCCCCCCc
Q 001679 923 DLRILRSSNSVNRPMSHGSILPRGNGHQ 950 (1032)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1032)
++.+++..++...+|..+..|..|+.++
T Consensus 1027 ~~~~~~~~v~~~~~m~P~k~l~r~~~v~ 1054 (1259)
T KOG0163|consen 1027 SPPVIRALVNDASPMGPNKMLIRSENVR 1054 (1259)
T ss_pred ccHHHHhhccccCCCCCccccccchhhh
Confidence 4557777777777776444455555544
No 260
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=72.24 E-value=1.9e+02 Score=33.34 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=6.7
Q ss_pred hhhhhhhhcCcccc
Q 001679 896 RDFADLIKYTPNEV 909 (1032)
Q Consensus 896 ~~~~~~~~~~~~~~ 909 (1032)
-....+++|-.+.+
T Consensus 214 l~k~~i~KYK~~le 227 (319)
T PF09789_consen 214 LLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334555555544
No 261
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=72.01 E-value=1.8 Score=41.50 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.6
Q ss_pred cceEEEeecccCCCcceEe
Q 001679 453 YNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKTyTm 471 (1032)
....++.+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456888999999999765
No 262
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=71.99 E-value=1.9e+02 Score=33.21 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001679 794 REELCSTLQIKVKELE 809 (1032)
Q Consensus 794 ~~e~~~~l~~~l~ele 809 (1032)
++..|.+|+...+.+.
T Consensus 76 LE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 76 LESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444333
No 263
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=71.85 E-value=1.3e+02 Score=31.23 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001679 258 EQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRY----ECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADS 333 (1032)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~ 333 (1032)
++|..++.++...+.+...|...-..-...|...+..+ +.+.+..=.....++-++..++.+-.+|+..-.++...
T Consensus 34 ~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErr 113 (159)
T PF05384_consen 34 KELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERR 113 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333444444444 33444444455555556655555555555444444444
Q ss_pred hHHHHH
Q 001679 334 IPELNK 339 (1032)
Q Consensus 334 ~~~~~~ 339 (1032)
+..+..
T Consensus 114 l~~l~~ 119 (159)
T PF05384_consen 114 LRNLEE 119 (159)
T ss_pred HHHHHH
Confidence 333333
No 264
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=71.84 E-value=1.1 Score=43.44 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=12.8
Q ss_pred ceEEEeecccCCCcceEe
Q 001679 454 NVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm 471 (1032)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999865
No 265
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.73 E-value=33 Score=37.02 Aligned_cols=10 Identities=10% Similarity=-0.247 Sum_probs=4.9
Q ss_pred ccCCCceeEE
Q 001679 172 GISGSPAVSG 181 (1032)
Q Consensus 172 ~~~g~p~Ina 181 (1032)
|....++|..
T Consensus 40 Pg~~y~Iv~~ 49 (206)
T PRK10884 40 PGDQYRIVGT 49 (206)
T ss_pred CCCCCceEEE
Confidence 4444555533
No 266
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=71.70 E-value=75 Score=29.11 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 001679 333 SIPELNKMVIGVQALVAQCEDFKMKYSEEQA-KRKELYN 370 (1032)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~-~Rr~l~n 370 (1032)
.+.|+..+...+-++......++..|.+|.. +|+.|++
T Consensus 37 Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 37 QIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666666777778888876653 5555544
No 267
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.69 E-value=3e+02 Score=35.36 Aligned_cols=7 Identities=43% Similarity=0.653 Sum_probs=4.6
Q ss_pred CCCcccC
Q 001679 646 KSNHIPY 652 (1032)
Q Consensus 646 ~~~hiPy 652 (1032)
.+.+|||
T Consensus 522 ~~s~iq~ 528 (970)
T KOG0946|consen 522 ESSIIQY 528 (970)
T ss_pred cccHHHH
Confidence 4567776
No 268
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=71.67 E-value=2e+02 Score=33.44 Aligned_cols=126 Identities=19% Similarity=0.403 Sum_probs=71.3
Q ss_pred CCCCccccccccC---cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHH
Q 001679 193 VPQTSHEFLKCNN---CAAEIEVPSAQKKLMRIKATEKYEKKIEELNKQFQ------LKTNECHEAWMSLTAANEQLEKV 263 (1032)
Q Consensus 193 ~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~~k~~~~~~~~ie~l~~e~~------~~~~e~~~~~~~~~~~~~~~~~~ 263 (1032)
+..+-.|.-+|+- |. |+ +++.+..|-+.+-+|-+.-. -.+-....+|+.+--.-+.|..+
T Consensus 20 vKRi~DG~rlc~Dl~~~~--------qE---RA~IEk~YaqqL~~wakkWr~lvekgpqyGt~e~aW~~~~teaerlS~l 88 (472)
T KOG2856|consen 20 VKRIEDGHRLCNDLMNCS--------QE---RARIEKAYAQQLTDWAKKWRQLVEKGPQYGTVEKAWNAFMTEAERLSEL 88 (472)
T ss_pred hhhhhhHHHHHHHHHHHH--------HH---HHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 3445566777765 32 22 45677899999988875543 12335677898876555666666
Q ss_pred HHHHhHHHHhhh----------chhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 001679 264 RMELDNKAFQTL----------TLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKM----MKKEHSQLSREAHE 329 (1032)
Q Consensus 264 ~~~~~~~~~~~~----------~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~e~~~l~~e~~~ 329 (1032)
-++++..+-... ++...+-.-..+.+.+..-+....+-|...+.+++.+-+. -+.|...+.+|.+.
T Consensus 89 H~evKd~L~nd~~e~iktwqK~a~H~~vm~G~KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~re~n~ 168 (472)
T KOG2856|consen 89 HLEVKDNLINDDVEKIKTWQKEAYHKQVMGGFKETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALTREQNA 168 (472)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 665554332211 1222222223455566666777777787777777665433 23444444444433
No 269
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=71.61 E-value=1.7 Score=50.25 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=23.0
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
|.+..++.-..+.|+..|+||||||.||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 455555654567899999999999999843
No 270
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=71.42 E-value=2.4e+02 Score=34.22 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=5.5
Q ss_pred HHHHHHhHHhh
Q 001679 626 AQNINRSLSAL 636 (1032)
Q Consensus 626 ~~~INkSL~aL 636 (1032)
|..|-.||..-
T Consensus 81 aAkiGqsllk~ 91 (596)
T KOG4360|consen 81 AAKIGQSLLKA 91 (596)
T ss_pred HHHHHHHHHhh
Confidence 44555555433
No 271
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=71.32 E-value=3.7 Score=52.41 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=20.1
Q ss_pred HHHHHhcCcceEEEeecccCCCcceE
Q 001679 445 LVISVLDGYNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 445 lV~~~l~G~N~~IfaYGqTGSGKTyT 470 (1032)
.+..+.+|+|+.|.| +||||||-+
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeA 53 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEA 53 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHH
Confidence 445577999999988 999999866
No 272
>PRK11519 tyrosine kinase; Provisional
Probab=71.30 E-value=3e+02 Score=35.28 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001679 213 PSAQKKLMRIKATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQ 273 (1032)
Q Consensus 213 ~~~~~k~~~~k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1032)
+|..-.-+.+.+...|-+..-+.+.+-. .+...=..+++.++..+|+.....++....+
T Consensus 238 dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a--~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 238 DREQIRDILNSITRNYLEQNIERKSEEA--SKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666777777665554432221 0111112223455555555555555444433
No 273
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.85 E-value=1.9e+02 Score=34.41 Aligned_cols=26 Identities=4% Similarity=0.110 Sum_probs=11.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHH
Q 001679 290 NITSRYECDKKYWAAAVSDLQEKVKM 315 (1032)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (1032)
.+..++..++......|..|..++..
T Consensus 325 sl~dklaee~qr~sd~LE~lrlql~~ 350 (502)
T KOG0982|consen 325 SLADKLAEEDQRSSDLLEALRLQLIC 350 (502)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 33444444444444455555444433
No 274
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=70.58 E-value=5.6 Score=43.81 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=35.2
Q ss_pred eCChHHHHHHHHhhhcccccccCCCCCCCCCCceEEEEEEEEeecCCCceeeeeeeEeecCCCccc
Q 001679 548 VNSIREAWNVLQTGSSARAVGSNNVNEHSSRSHCMLCIMVRAKNLISGECTKSKLWLVDLAGSERL 613 (1032)
Q Consensus 548 V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~skL~lVDLAGSEr~ 613 (1032)
+.+++++...+..+... ..++ ...-|.-++.|.|.+++. -.|+||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 45788888888766532 1111 123466688888887754 36999999998543
No 275
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=70.35 E-value=1.2e+02 Score=33.48 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001679 304 AAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMV 341 (1032)
Q Consensus 304 ~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~ 341 (1032)
+.+.+|.+.++.+.+.+.-|.+++.+..+.|+.+.+..
T Consensus 264 dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 264 DFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444444333
No 276
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=70.05 E-value=1.5e+02 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001679 785 SQLLERLKGREELCSTLQIKVKELENRLR 813 (1032)
Q Consensus 785 ~~l~~~~~~~~e~~~~l~~~l~ele~~l~ 813 (1032)
..+...+...+..|.-|...++-+.+.+.
T Consensus 60 ~dl~~qL~aAEtRCslLEKQLeyMRkmv~ 88 (178)
T PF14073_consen 60 QDLSSQLSAAETRCSLLEKQLEYMRKMVE 88 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655443
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=69.86 E-value=1.5 Score=46.58 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.5
Q ss_pred ceEEEeecccCCCcceEee
Q 001679 454 NVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm~ 472 (1032)
++.|+-.|+||||||.+|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678999999999999984
No 278
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=69.69 E-value=2.1 Score=51.41 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=34.7
Q ss_pred CceeeecceEECCCCCchhhhhcchHHHHHH--hcC--cceEEEeecccCCCcceEeec
Q 001679 419 TRKTFKFDRVFTPNDGQVDVFADASPLVISV--LDG--YNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 419 ~~~~F~FD~VF~~~~tQ~~vf~~v~plV~~~--l~G--~N~~IfaYGqTGSGKTyTm~G 473 (1032)
-...|+||.-+... ++...|..+..+.... ..| ||. +|-||++|+||||.+..
T Consensus 104 l~~~~tFdnFv~g~-~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 104 LDPLMTFANFLVTP-ENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CCccccccceeeCC-cHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 34679999876543 4555565555555432 223 454 67899999999998754
No 279
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=69.14 E-value=2.3e+02 Score=33.10 Aligned_cols=17 Identities=47% Similarity=0.595 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001679 225 TEKYEKKIEELNKQFQL 241 (1032)
Q Consensus 225 ~~~~~~~ie~l~~e~~~ 241 (1032)
..-|.+.||+|.++.+.
T Consensus 347 EetHQkkiEdLQRqHqR 363 (593)
T KOG4807|consen 347 EETHQKKIEDLQRQHQR 363 (593)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677788888777763
No 280
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.13 E-value=2.8e+02 Score=34.00 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 001679 833 KLKEQERESESHSISLQHKVKELES 857 (1032)
Q Consensus 833 ~l~e~~~~~e~~~~~l~~k~~eLe~ 857 (1032)
+++..++++.+..+.|-..+-|||.
T Consensus 153 rlr~elKe~KfRE~RllseYSELEE 177 (772)
T KOG0999|consen 153 RLRDELKEYKFREARLLSEYSELEE 177 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444443
No 281
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=69.00 E-value=2.1 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=20.0
Q ss_pred HhcCcceEEEeecccCCCcceEeec
Q 001679 449 VLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 449 ~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.+.-..+.|+..|+||||||.||..
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHHH
Confidence 3444578999999999999999843
No 282
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=68.83 E-value=1.6 Score=41.36 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.0
Q ss_pred eEEEeecccCCCcceEeec
Q 001679 455 VCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm~G 473 (1032)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999998743
No 283
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.60 E-value=2.2e+02 Score=36.52 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001679 281 VEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHEC 330 (1032)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~ 330 (1032)
+++..+++.+...+|....+.+...+.+++...+.|+-|+.+|..++.+.
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555554444443
No 284
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=68.50 E-value=2.2 Score=49.99 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=20.0
Q ss_pred HHHHHhcCcceEEEeecccCCCcceEee
Q 001679 445 LVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 445 lV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
++..++. .++.|+..|+||||||+||.
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 3444443 56678889999999999984
No 285
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=68.15 E-value=3.1 Score=46.07 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=28.3
Q ss_pred hhhcc--hHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 438 VFADA--SPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 438 vf~~v--~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
-|++. .+++..+.--..+.|+..|.|||||+.||-
T Consensus 109 t~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 109 TFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 35553 567777777888899999999999999984
No 286
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.11 E-value=2e+02 Score=31.91 Aligned_cols=12 Identities=8% Similarity=0.573 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 001679 228 YEKKIEELNKQF 239 (1032)
Q Consensus 228 ~~~~ie~l~~e~ 239 (1032)
|+..+.++..+.
T Consensus 10 le~rL~q~eee~ 21 (246)
T PF00769_consen 10 LEERLRQMEEEM 21 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 287
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=68.07 E-value=3e+02 Score=33.89 Aligned_cols=12 Identities=50% Similarity=0.479 Sum_probs=5.1
Q ss_pred ChHhHHHHHHHH
Q 001679 683 DLSETLSSLNFA 694 (1032)
Q Consensus 683 ~~~ETl~TL~fA 694 (1032)
.+.+-+.-|..|
T Consensus 159 sL~ekl~lld~a 170 (511)
T PF09787_consen 159 SLQEKLSLLDEA 170 (511)
T ss_pred hHHHHHHHHHHH
Confidence 344444444433
No 288
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.00 E-value=1.5e+02 Score=32.83 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=6.8
Q ss_pred hHhHHHHHHHHHHh
Q 001679 481 NYRTLEQLFEIAKE 494 (1032)
Q Consensus 481 ipral~~LF~~~~~ 494 (1032)
..+.|...|.....
T Consensus 221 ~~~~i~~ai~ia~k 234 (251)
T PF11932_consen 221 YRREIRKAIRIARK 234 (251)
T ss_pred HHHHHHHHHHHHhC
Confidence 34455555554443
No 289
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.97 E-value=2.6e+02 Score=33.24 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHh
Q 001679 751 YKDQTYKNQQEKVKELEGQVS 771 (1032)
Q Consensus 751 ~~~~~~~~~~e~~~~le~~~~ 771 (1032)
...+..+++++.+++|..++.
T Consensus 170 ~d~ee~kqlEe~ieeL~qsl~ 190 (446)
T KOG4438|consen 170 EDEEEVKQLEENIEELNQSLL 190 (446)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 344455555666665554443
No 290
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=67.82 E-value=2.7 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=18.1
Q ss_pred HHhcCcceEEEeecccCCCcceEe
Q 001679 448 SVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 448 ~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
..+......++-+|++|||||+++
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 334444667888999999999765
No 291
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=67.71 E-value=3.1 Score=41.85 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.1
Q ss_pred HHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 445 LVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 445 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
++..++.|.| ++..|+||||||+.+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 4455667777 67889999999998764
No 292
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=67.22 E-value=1.7 Score=46.82 Aligned_cols=16 Identities=44% Similarity=0.765 Sum_probs=13.1
Q ss_pred EEeecccCCCcceEee
Q 001679 457 IFAYGQTGTGKTFTME 472 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm~ 472 (1032)
+...|.||||||+|+-
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4457999999999983
No 293
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=66.97 E-value=2.4e+02 Score=32.37 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 855 LESKLKEQERQHVESLMLRQKIKELEDKLKEQEQQ 889 (1032)
Q Consensus 855 Le~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~ 889 (1032)
||..+..+++. -...|..++..|+.+-+.++..
T Consensus 168 lEn~LE~EQE~--lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 168 LENTLEQEQEA--LVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555443332 1345666666666554444433
No 294
>PF12846 AAA_10: AAA-like domain
Probab=66.65 E-value=1.8 Score=47.79 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.3
Q ss_pred ceEEEeecccCCCcceEee
Q 001679 454 NVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm~ 472 (1032)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999885
No 295
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.54 E-value=2.7 Score=46.93 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..+..++..-.+.|+-.|.||||||.||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 44556666666778889999999999984
No 296
>PRK06921 hypothetical protein; Provisional
Probab=66.47 E-value=3.3 Score=46.28 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=23.9
Q ss_pred hhhcchHHHHHHhc---CcceEEEeecccCCCcceEeec
Q 001679 438 VFADASPLVISVLD---GYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 438 vf~~v~plV~~~l~---G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
++..+...+..+-. +..-.|+-||++|+||||.+.+
T Consensus 98 ~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 98 AYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 44444455555432 2345688899999999998865
No 297
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.37 E-value=3e+02 Score=33.36 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=13.4
Q ss_pred CCcceEEEEEeCCCCcChHhHHHHH
Q 001679 667 GDSKTLMFVQISPSEQDLSETLSSL 691 (1032)
Q Consensus 667 Gnskt~mI~~ISP~~~~~~ETl~TL 691 (1032)
|++..+=|-.-+|++.-.....+++
T Consensus 119 ~~s~vi~Is~~~~dP~~Aa~i~n~l 143 (498)
T TIGR03007 119 GRDNLFTISYEDKDPELAKDVVQTL 143 (498)
T ss_pred CCCCeEEEEeeCCCHHHHHHHHHHH
Confidence 3444444445566666555555554
No 298
>PF15294 Leu_zip: Leucine zipper
Probab=66.15 E-value=1.8e+02 Score=32.81 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 221 RIKATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRME 266 (1032)
Q Consensus 221 ~~k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (1032)
..+.......+-+.|+..+..-..+|......-..++.+|..++..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~ 175 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDE 175 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666676666666667777777777777777777663
No 299
>PF13166 AAA_13: AAA domain
Probab=66.02 E-value=3.7e+02 Score=34.21 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=8.7
Q ss_pred ccccCcccc-cc
Q 001679 201 LKCNNCAAE-IE 211 (1032)
Q Consensus 201 ~~~~~~~~~-~~ 211 (1032)
..|+-|... +.
T Consensus 256 ~~CpfC~q~~l~ 267 (712)
T PF13166_consen 256 DTCPFCQQEPLS 267 (712)
T ss_pred CcCCCCCCcCCc
Confidence 789999884 54
No 300
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=65.91 E-value=2.6 Score=44.72 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=21.2
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..|..++...+..++..|+.||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45566666555556668999999999873
No 301
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=65.90 E-value=2.1 Score=48.71 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=26.9
Q ss_pred eecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 423 FKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 423 F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
-+||.+.+ |.++...+..++. .|....++-||++|+|||+++.
T Consensus 12 ~~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 45666664 4444444333332 3443357889999999998873
No 302
>PRK11281 hypothetical protein; Provisional
Probab=65.57 E-value=2.1e+02 Score=38.58 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=7.1
Q ss_pred CCCCCCCcchhhhcc
Q 001679 943 LPRGNGHQHETRKKR 957 (1032)
Q Consensus 943 ~~~~~~~~~~~~~~~ 957 (1032)
..+|+..+++.-++.
T Consensus 331 ~l~~s~~l~~~l~~q 345 (1113)
T PRK11281 331 VLKGSLLLSRILYQQ 345 (1113)
T ss_pred HhcccHHHHHHHHHH
Confidence 344555555554443
No 303
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=65.49 E-value=4.5 Score=50.93 Aligned_cols=89 Identities=29% Similarity=0.324 Sum_probs=54.8
Q ss_pred eecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEeeccCC---CCchh--H--hHHHHHHHHHHhc
Q 001679 423 FKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQ---SRGVN--Y--RTLEQLFEIAKER 495 (1032)
Q Consensus 423 F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~---~~GIi--p--ral~~LF~~~~~~ 495 (1032)
|....=|.|.-.|..-|.. ++..+-+|...- ..+|.|||||||||.+--. .+-|| | .....|++.+...
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 3334446777777766554 455555564222 3789999999999976321 22222 1 2445666666554
Q ss_pred CCCceeeeeeeEEEEEcCce
Q 001679 496 SETFTYNISVSVLEVYNEQI 515 (1032)
Q Consensus 496 ~~~~~~~v~vS~~EIYnE~i 515 (1032)
-.+..+..+|||+.-|.-..
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred CCCCeEEEEeeecccCCccc
Confidence 44445788999999997554
No 304
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=65.41 E-value=5.3e+02 Score=35.81 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=12.8
Q ss_pred EEeecccCCCcceEee
Q 001679 457 IFAYGQTGTGKTFTME 472 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm~ 472 (1032)
++--|++|||||.+|-
T Consensus 27 ~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 27 LLLRGNNGAGKSKVLE 42 (1353)
T ss_pred EEEECCCCCcHHHHHH
Confidence 3456999999998874
No 305
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=65.38 E-value=2.2e+02 Score=31.39 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001679 787 LLERLKGREELCSTLQIKVKELENRLRD 814 (1032)
Q Consensus 787 l~~~~~~~~e~~~~l~~~l~ele~~l~~ 814 (1032)
+...+....+.|..+...+.+....+..
T Consensus 90 ~~~~l~~L~~ri~~L~~~i~ee~~~r~~ 117 (247)
T PF06705_consen 90 LQSRLDSLNDRIEALEEEIQEEKEERPQ 117 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333334444444444444444433333
No 306
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=65.31 E-value=3.7e+02 Score=33.96 Aligned_cols=7 Identities=29% Similarity=1.028 Sum_probs=2.9
Q ss_pred hcCcceE
Q 001679 450 LDGYNVC 456 (1032)
Q Consensus 450 l~G~N~~ 456 (1032)
+.|||-|
T Consensus 8 f~~fnkc 14 (786)
T PF05483_consen 8 FKSFNKC 14 (786)
T ss_pred HhhhccC
Confidence 3344444
No 307
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=65.29 E-value=1.7e+02 Score=29.96 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001679 216 QKKLMRIKATEKYEKKIEELNKQFQ 240 (1032)
Q Consensus 216 ~~k~~~~k~~~~~~~~ie~l~~e~~ 240 (1032)
..+-+..+-.....+.|++|+..+.
T Consensus 22 ~i~~~L~k~~~~v~~~i~~L~~~L~ 46 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKDIQELENLLD 46 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccchHHHHHHHHHHHH
Confidence 6666677777777788888876664
No 308
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=65.23 E-value=1.2e+02 Score=33.66 Aligned_cols=52 Identities=27% Similarity=0.350 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHH
Q 001679 230 KKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTV 281 (1032)
Q Consensus 230 ~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 281 (1032)
.+|-+|+.++-.-.+.|..+-..+.-+.++|++...|-+.-.....+|.-.+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ 60 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNL 60 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555666666555566666666666667777766666544333333333333
No 309
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=65.16 E-value=3.3e+02 Score=33.64 Aligned_cols=8 Identities=0% Similarity=0.571 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 001679 486 EQLFEIAK 493 (1032)
Q Consensus 486 ~~LF~~~~ 493 (1032)
+++|+.++
T Consensus 182 d~v~~~i~ 189 (607)
T KOG0240|consen 182 DEVLDVID 189 (607)
T ss_pred HHHHHHHh
Confidence 44555444
No 310
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=65.12 E-value=2.5 Score=46.89 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=15.2
Q ss_pred ceEEEeecccCCCcceEe
Q 001679 454 NVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm 471 (1032)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 556677799999999987
No 311
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.69 E-value=1.4e+02 Score=33.81 Aligned_cols=72 Identities=31% Similarity=0.439 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001679 802 QIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERESESHSISLQHKVKELESKLKEQERQHVESLMLRQKIKELED 881 (1032)
Q Consensus 802 ~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~ 881 (1032)
.++-.+--..++.+++...+++.+++++.|..+++.++++ ..|...|.+.-.+ |-..|++++++|++
T Consensus 325 eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel-------~~kf~~lkr~h~e------Ek~kle~~rr~Lee 391 (406)
T KOG3859|consen 325 EAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKEL-------HEKFDRLKRLHQE------EKKKLEEKRKQLEE 391 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3333333334444555566677777777777777665432 2333333221111 12356677777776
Q ss_pred HHHHH
Q 001679 882 KLKEQ 886 (1032)
Q Consensus 882 ~l~~~ 886 (1032)
+.-..
T Consensus 392 e~~~f 396 (406)
T KOG3859|consen 392 EVNAF 396 (406)
T ss_pred HHHHH
Confidence 65443
No 312
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=64.67 E-value=2.8e+02 Score=32.40 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001679 873 RQKIKELEDKLKEQEQQF 890 (1032)
Q Consensus 873 ~~k~~~Le~~l~~~~~~~ 890 (1032)
..++.+++.++......+
T Consensus 245 ~~~l~~~~~~l~~~~~~l 262 (423)
T TIGR01843 245 LEELTEAQARLAELRERL 262 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 313
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.26 E-value=89 Score=38.59 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=13.0
Q ss_pred cCCCceeEEEEEeecCCC
Q 001679 173 ISGSPAVSGICIRRASKV 190 (1032)
Q Consensus 173 ~~g~p~InaIEI~k~~~~ 190 (1032)
..|.|.|=|--|.++|.+
T Consensus 286 ~lG~PvvVAtDVtp~P~~ 303 (652)
T COG2433 286 ELGKPVVVATDVTPAPET 303 (652)
T ss_pred HcCCceEEEccCCCChHH
Confidence 357888888777776654
No 314
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=63.90 E-value=50 Score=29.56 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=41.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001679 287 NLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELN 338 (1032)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~ 338 (1032)
.++.|...|....+.|.++...|+..+...+.+...|...+..+...+..|+
T Consensus 11 ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 11 ALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888899999999999999999888888877666665544444
No 315
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=63.57 E-value=2.7e+02 Score=31.86 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001679 846 ISLQHKVKELESKLK 860 (1032)
Q Consensus 846 ~~l~~k~~eLe~k~~ 860 (1032)
..|..|+.++..-+.
T Consensus 225 ~lY~aKyeefq~tl~ 239 (391)
T KOG1850|consen 225 ALYMAKYEEFQTTLA 239 (391)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444544444443
No 316
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=63.05 E-value=2.6e+02 Score=38.69 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=8.0
Q ss_pred CCCceEEEEEEEE
Q 001679 577 SRSHCMLCIMVRA 589 (1032)
Q Consensus 577 SRSH~If~i~v~~ 589 (1032)
-|.|.-|.+.+..
T Consensus 1220 yR~w~~F~~~~~~ 1232 (1353)
T TIGR02680 1220 YRRWHRFTVYYER 1232 (1353)
T ss_pred hhhheEEEEEEEe
Confidence 3567777775554
No 317
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.03 E-value=1.8e+02 Score=29.50 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 301 YWAAAVSDLQEKVKMMKKEHSQLS 324 (1032)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~e~~~l~ 324 (1032)
.+...+..+...++..+.|+..+.
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554444
No 318
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=62.87 E-value=94 Score=36.85 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=17.0
Q ss_pred HhHHhhHHHHHHHh----cC--CCcccCCCCcchhhhccccCCCc
Q 001679 631 RSLSALGDVIYSLA----TK--SNHIPYRNSKLTHLLQDSLGGDS 669 (1032)
Q Consensus 631 kSL~aLg~VI~aL~----~~--~~hiPyRdSKLT~LLqdsLgGns 669 (1032)
+++.+.-+|+.-+. .+ +-.+||+.+ .+.++++|
T Consensus 369 ~amvafLd~L~qf~~e~~~k~~~~~lPy~ie------~d~i~d~~ 407 (447)
T KOG2751|consen 369 KAMVAFLDCLKQFADELEKKDTSFNLPYDIE------KDKLNDPS 407 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCcchhh------cccccCCc
Confidence 34445555554443 22 235677663 36666664
No 319
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.64 E-value=1.6e+02 Score=37.35 Aligned_cols=9 Identities=11% Similarity=0.431 Sum_probs=5.4
Q ss_pred eEEEEEECC
Q 001679 124 RVFNVFVQE 132 (1032)
Q Consensus 124 RvFdV~Ing 132 (1032)
-.+.|+.+|
T Consensus 117 ~~l~v~~~~ 125 (650)
T TIGR03185 117 EKLTVYKDD 125 (650)
T ss_pred CcEEEEECC
Confidence 345666666
No 320
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=62.63 E-value=2.2e+02 Score=30.44 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001679 740 ENLQNL 745 (1032)
Q Consensus 740 ~~l~~l 745 (1032)
+++..|
T Consensus 43 ~e~~~L 48 (193)
T PF14662_consen 43 EEITDL 48 (193)
T ss_pred HHHHHH
Confidence 333333
No 321
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.55 E-value=5e+02 Score=34.53 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=9.6
Q ss_pred EEEeCChHHHHHHHHhhhccc
Q 001679 545 EANVNSIREAWNVLQTGSSAR 565 (1032)
Q Consensus 545 e~~V~s~~e~~~ll~~g~~~R 565 (1032)
.+.|.+-.-+..+|.--...|
T Consensus 533 aIiVdte~ta~~CI~ylKeqr 553 (1141)
T KOG0018|consen 533 AIIVDTEATARDCIQYLKEQR 553 (1141)
T ss_pred eEEeccHHHHHHHHHHHHHhc
Confidence 344554444444444444444
No 322
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=62.50 E-value=2.3 Score=45.02 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=20.7
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 334333345668899999999999998763
No 323
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=62.24 E-value=4 Score=42.72 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.8
Q ss_pred eEEEeecccCCCcceEeec
Q 001679 455 VCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm~G 473 (1032)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3588899999999998765
No 324
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=62.05 E-value=4.3e+02 Score=33.67 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHH
Q 001679 730 SKDESLRKLEENLQNLENRAKYKDQ 754 (1032)
Q Consensus 730 ~~~~~~~~le~~l~~le~~~~~~~~ 754 (1032)
.....+..+++.+..|-......++
T Consensus 458 t~gsA~ed~Qeqn~kL~~el~ekdd 482 (698)
T KOG0978|consen 458 TIGSAFEDMQEQNQKLLQELREKDD 482 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455555555555444443333
No 325
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.88 E-value=2.7e+02 Score=31.16 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001679 846 ISLQHKVKELESKLKEQERQ 865 (1032)
Q Consensus 846 ~~l~~k~~eLe~k~~~~~~~ 865 (1032)
..-.++|++|+.+..+++..
T Consensus 403 k~e~qkikeleek~~eeeda 422 (445)
T KOG2891|consen 403 KAEEQKIKELEEKIKEEEDA 422 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777766653
No 326
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=61.88 E-value=3.7 Score=47.15 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=20.2
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..++..++.+. ..|+..|.||||||++|.
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34566666654 456666999999997763
No 327
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.84 E-value=4.7e+02 Score=33.95 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=22.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 287 NLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREA 327 (1032)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~ 327 (1032)
+|.......+.+...+...|...+.+...++-|+.-+..|+
T Consensus 124 ~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 124 ELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555566666666666666655555443
No 328
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=61.65 E-value=1.8 Score=44.40 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=15.4
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
..++.....|...+|+.+|.+|+|||+.+
T Consensus 13 ~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 13 RDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33343234677788999999999999874
No 329
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=61.21 E-value=3.5 Score=39.39 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.9
Q ss_pred EEEeecccCCCcceEe
Q 001679 456 CIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm 471 (1032)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999764
No 330
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.17 E-value=90 Score=35.89 Aligned_cols=35 Identities=29% Similarity=0.561 Sum_probs=17.2
Q ss_pred HHHHhHHhhHHHHHHHhc------C-CCcccCCCCcchhhhccccCCC
Q 001679 628 NINRSLSALGDVIYSLAT------K-SNHIPYRNSKLTHLLQDSLGGD 668 (1032)
Q Consensus 628 ~INkSL~aLg~VI~aL~~------~-~~hiPyRdSKLT~LLqdsLgGn 668 (1032)
..+..+.++-.|+.-+.. + .-..||+=. +|..||.
T Consensus 237 ~Fd~am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~------~~~I~~~ 278 (314)
T PF04111_consen 237 KFDKAMVAFLDCLQQLAEFVEKRDPQSFELPYKID------KDKIGGV 278 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----SS-EC------TTEECTC
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCcccccceecc------CCccCCe
Confidence 455666666666666653 1 335666543 4556655
No 331
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.14 E-value=3.6e+02 Score=34.18 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=5.5
Q ss_pred ceEEEEEEEe
Q 001679 103 GHYYVDLHFA 112 (1032)
Q Consensus 103 G~Y~VrLhFa 112 (1032)
+.+.|.+.|.
T Consensus 83 ~~~~V~l~f~ 92 (650)
T TIGR03185 83 NPASITLTFS 92 (650)
T ss_pred CCeEEEEEEE
Confidence 4455666654
No 332
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.05 E-value=2.1e+02 Score=37.12 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.1
Q ss_pred eEEEeecccCCCcceEe
Q 001679 455 VCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm 471 (1032)
-.+.-.|+.|+|||..|
T Consensus 323 ~~liItGpNg~GKSTlL 339 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTL 339 (771)
T ss_pred eEEEEECCCCCCchHHH
Confidence 35677799999999887
No 333
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.00 E-value=80 Score=35.10 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 280 TVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQ 322 (1032)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~ 322 (1032)
-+..|++-.+.-..+||.+.+.....+..|+.+++.++.+..+
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k 125 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444444444444444444444444444444333
No 334
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=60.99 E-value=3.4e+02 Score=32.14 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=12.7
Q ss_pred cCCCccccccccCcccccccc
Q 001679 959 SRSGETENNNILKSSSYENKK 979 (1032)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~ 979 (1032)
..|+|.-+.+.-.++..-++.
T Consensus 376 ~~SPg~~vq~~~~t~g~~r~~ 396 (552)
T KOG2129|consen 376 TSSPGVRVQDQQSTSGYRRQL 396 (552)
T ss_pred cCCCceeeccccccccccccC
Confidence 355777777766666654444
No 335
>PF13479 AAA_24: AAA domain
Probab=60.89 E-value=3.5 Score=44.33 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.0
Q ss_pred ceEEEeecccCCCcceEeec
Q 001679 454 NVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm~G 473 (1032)
+..|+.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 56789999999999987754
No 336
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.81 E-value=3.1e+02 Score=31.64 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 001679 298 DKKYWAAAVSDLQEKVKMMKKEHSQLSREAHEC-------ADSIPELNKMVI-----------GVQALVAQCEDFKMKYS 359 (1032)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~-------~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~ 359 (1032)
++..+...+..++.++..+..++..+..|..++ ..+...||..+. .+..+..+++-|.+++.
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~ 206 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLK 206 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444443333 333333333221 23445566666666665
Q ss_pred HHHHHHHHHHHH
Q 001679 360 EEQAKRKELYNQ 371 (1032)
Q Consensus 360 ~e~~~Rr~l~n~ 371 (1032)
.-+.++.-+...
T Consensus 207 q~qeE~~l~k~~ 218 (319)
T PF09789_consen 207 QLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHH
Confidence 555555444333
No 337
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.61 E-value=3.6e+02 Score=33.57 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=16.6
Q ss_pred eeccCCCCchhHhHHHHHHHHHHhc
Q 001679 471 MEGTEQSRGVNYRTLEQLFEIAKER 495 (1032)
Q Consensus 471 m~G~~~~~GIipral~~LF~~~~~~ 495 (1032)
+.=+.+..|+=+.....+...+...
T Consensus 466 lilDEp~~gld~~~~~~~~~~l~~l 490 (563)
T TIGR00634 466 LIFDEVDVGVSGETAQAIAKKLAQL 490 (563)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
Confidence 3335566788788777777776654
No 338
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.53 E-value=3.6e+02 Score=32.17 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001679 247 HEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEH 320 (1032)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~ 320 (1032)
+-+..+++++++.|++.++|-.+.--+...|...+. ..-.|..+....+.+... ..|++|+.+++.+..|+
T Consensus 255 q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~-ea~rl~elreg~e~e~~r--kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 255 QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD-EAPRLSELREGVENETSR--KELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh-hhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 356667777788888777775553333333332222 111233333333332221 35555555555544443
No 339
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.16 E-value=2.7 Score=44.72 Aligned_cols=17 Identities=47% Similarity=0.589 Sum_probs=14.7
Q ss_pred EEEeecccCCCcceEee
Q 001679 456 CIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm~ 472 (1032)
.|+-.|+||+|||.|..
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57889999999999963
No 340
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=60.13 E-value=63 Score=37.32 Aligned_cols=19 Identities=26% Similarity=0.690 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001679 246 CHEAWMSLTAANEQLEKVR 264 (1032)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~ 264 (1032)
|.+.|.++++.-++|+..-
T Consensus 2 ~~eEW~eL~~efq~Lqeth 20 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETH 20 (330)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 341
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.10 E-value=2.7e+02 Score=30.74 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 001679 222 IKATEKYEKKIEELNKQFQLKTNE------------CHEAWMSLTAANEQLEKVRMEL 267 (1032)
Q Consensus 222 ~k~~~~~~~~ie~l~~e~~~~~~e------------~~~~~~~~~~~~~~~~~~~~~~ 267 (1032)
.+++..|.+.+..|-.++..|... ....|..+-.--+.+.+....+
T Consensus 32 aeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~~~a~~h~~l 89 (241)
T cd07656 32 AEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTKQESRDHSTL 89 (241)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999887655322 3447777655555554444443
No 342
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.71 E-value=1.7e+02 Score=32.36 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=2.4
Q ss_pred CCEEEE
Q 001679 377 GNIRVF 382 (1032)
Q Consensus 377 gnIrV~ 382 (1032)
+.|-||
T Consensus 166 ~~i~~~ 171 (251)
T PF11932_consen 166 RTIEVY 171 (251)
T ss_pred CceeEE
Confidence 334333
No 343
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=59.41 E-value=3.2e+02 Score=31.33 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001679 871 MLRQKIKELEDKLKEQEQ 888 (1032)
Q Consensus 871 ~l~~k~~~Le~~l~~~~~ 888 (1032)
.|..++.+|++++.....
T Consensus 273 ~L~aEL~elqdkY~E~~~ 290 (306)
T PF04849_consen 273 QLQAELQELQDKYAECMA 290 (306)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666555433
No 344
>PRK09183 transposase/IS protein; Provisional
Probab=58.83 E-value=4.5 Score=45.01 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=16.4
Q ss_pred cCcceEEEeecccCCCcceEeec
Q 001679 451 DGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 451 ~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4555 45689999999998864
No 345
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=58.50 E-value=5.1e+02 Score=33.30 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=7.9
Q ss_pred eCChHHHHHHHHhh
Q 001679 548 VNSIREAWNVLQTG 561 (1032)
Q Consensus 548 V~s~~e~~~ll~~g 561 (1032)
+....+++..|+.-
T Consensus 246 ~~KEadLLkCiQt~ 259 (861)
T PF15254_consen 246 QPKEADLLKCIQTH 259 (861)
T ss_pred ccchHHHHHHHHHH
Confidence 44455666666544
No 346
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=58.49 E-value=3.2 Score=53.81 Aligned_cols=69 Identities=22% Similarity=0.395 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHH
Q 001679 793 GREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERES---ESHSISLQHKVKELESKLKE 861 (1032)
Q Consensus 793 ~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~---e~~~~~l~~k~~eLe~k~~~ 861 (1032)
.++..+.+|+.++.+++......-......++.++++++..|....+.. ......++.++++|...+.+
T Consensus 718 ~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee 789 (859)
T PF01576_consen 718 ALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEE 789 (859)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3444455566666666543332222233445556666665555333221 11223344445555444443
No 347
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=58.29 E-value=3.3e+02 Score=31.06 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 001679 872 LRQKIKELEDKLK 884 (1032)
Q Consensus 872 l~~k~~~Le~~l~ 884 (1032)
|++++.+...+-.
T Consensus 233 LrQQLddA~~K~~ 245 (305)
T PF14915_consen 233 LRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 348
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=58.13 E-value=1.8e+02 Score=27.93 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=50.3
Q ss_pred ceeEE-EecCCCceEEEEEEEeecccCCCCCcceEEEEEECC--EEEecccccccccCCCCCeEEEEEEEEEcCCceEEE
Q 001679 92 NFCYR-FNDIPPGHYYVDLHFAEIINTNGPKGMRVFNVFVQE--EKVVSDFDIFSIVGANKPLQLVDIGVSVKEEGTVVV 168 (1032)
Q Consensus 92 ~~sY~-fp~v~~G~Y~VrLhFaEi~~~~~~~G~RvFdV~Ing--~~vl~~fDI~~~aG~~~a~~~~~f~V~v~~dg~L~I 168 (1032)
-+.|. +..-..|.|.|.+.++-.. +...++|+|+| -.++..+++.. .|+-.........|... .|.=.|
T Consensus 33 ~~~~~~Vd~~~~g~y~~~~~~a~~~------~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~l~-~G~h~i 104 (125)
T PF03422_consen 33 WIEYNNVDVPEAGTYTLTIRYANGG------GGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVKLP-AGKHTI 104 (125)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEESS------SSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEEEE-SEEEEE
T ss_pred EEEEEEEeeCCCceEEEEEEEECCC------CCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEeeC-CCeeEE
Confidence 46777 5433678999998776522 22789999999 45567788754 44444434334555554 365444
Q ss_pred EeeccCC---CceeEEEEEe
Q 001679 169 RFEGISG---SPAVSGICIR 185 (1032)
Q Consensus 169 ~f~~~~g---~p~InaIEI~ 185 (1032)
.|....+ .+-|..|.+.
T Consensus 105 ~l~~~~~~~~~~niD~~~f~ 124 (125)
T PF03422_consen 105 YLVFNGGDGWAFNIDYFQFT 124 (125)
T ss_dssp EEEESSSSSB-EEEEEEEEE
T ss_pred EEEEECCCCceEEeEEEEEE
Confidence 4443333 2556666554
No 349
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=57.93 E-value=3e+02 Score=30.52 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 001679 229 EKKIEELNKQF 239 (1032)
Q Consensus 229 ~~~ie~l~~e~ 239 (1032)
+++..+|...+
T Consensus 4 Er~k~Ele~rL 14 (246)
T PF00769_consen 4 EREKQELEERL 14 (246)
T ss_dssp HHHCHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33444444333
No 350
>PF14992 TMCO5: TMCO5 family
Probab=57.89 E-value=2.9e+02 Score=31.27 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 001679 714 LQKMKVMLEKARQDSRSKDESLRKLEENLQN 744 (1032)
Q Consensus 714 l~~lk~~l~~~~~e~~~~~~~~~~le~~l~~ 744 (1032)
.+++...-..+..+...+...+..|+.++..
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~ 43 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITK 43 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433344444444444555555555443
No 351
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=57.85 E-value=2.4e+02 Score=29.37 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001679 233 EELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEK 312 (1032)
Q Consensus 233 e~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 312 (1032)
++|+.+++ .....+.+-|.+|.+++.......-... ........+......+..+.......+..++..
T Consensus 45 eqLkien~-------~l~~kIeERn~eL~~Lk~~~~~~v~~L~----h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~ 113 (177)
T PF13870_consen 45 EQLKIENQ-------QLNEKIEERNKELLKLKKKIGKTVQILT----HVKEKLHFLSEELERLKQELKDREEELAKLREE 113 (177)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 313 VKMMKKEHSQLSREAHECADS---------IPELNKMVIGVQALVAQCEDFKMKYSEEQA 363 (1032)
Q Consensus 313 ~~~~~~e~~~l~~e~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~ 363 (1032)
+..++.++..+......+... +.++......+..+....+.+++++...+.
T Consensus 114 l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 114 LYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 352
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.82 E-value=5.8 Score=47.06 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=24.4
Q ss_pred chhhhhcchHHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 435 QVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 435 Q~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
|..+.....++...+-.+.-..++-||++|+|||++.
T Consensus 17 q~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 17 QEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred cHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 5556555344444444555556777999999999665
No 353
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.77 E-value=2.2e+02 Score=28.84 Aligned_cols=10 Identities=30% Similarity=0.135 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 001679 230 KKIEELNKQF 239 (1032)
Q Consensus 230 ~~ie~l~~e~ 239 (1032)
.-|..|....
T Consensus 38 n~i~~Ll~~~ 47 (151)
T PF11559_consen 38 NCIYDLLQQR 47 (151)
T ss_pred HHHHHHHHHH
Confidence 3444454444
No 354
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=57.67 E-value=4.5 Score=45.96 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=21.4
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..++..++.+ ...|+..|.||||||.+|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 4556666654 3567788999999999874
No 355
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.65 E-value=1.8e+02 Score=33.37 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001679 870 LMLRQKIKELEDKLKEQEQQF 890 (1032)
Q Consensus 870 ~~l~~k~~~Le~~l~~~~~~~ 890 (1032)
..|+.++..|.++|....+.+
T Consensus 150 d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 150 DSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555444
No 356
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.52 E-value=3e+02 Score=35.74 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=13.7
Q ss_pred eEEEeecccCCCcceEee
Q 001679 455 VCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm~ 472 (1032)
-+++-.|+.++|||.+|-
T Consensus 328 ~~~iITGpN~gGKTt~lk 345 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLK 345 (782)
T ss_pred eEEEEECCCCCCcHHHHH
Confidence 345668999999998873
No 357
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=56.98 E-value=23 Score=45.70 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCccccccccCcccccccc-hhHHHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001679 194 PQTSHEFLKCNNCAAEIEVP-SAQKKLMRI--KATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNK 270 (1032)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~--k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1032)
.....+..+|..+++.+..+ ..++--++. ......+..++-|..++ ...+++++
T Consensus 154 ~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~el-----------------------e~l~l~~~ 210 (775)
T TIGR00763 154 EDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKEL-----------------------ELLKLQNK 210 (775)
T ss_pred hccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHH
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHH
Q 001679 271 AFQTLTLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQ---LSREAHECADSIPELNKMVIGVQAL 347 (1032)
Q Consensus 271 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~---l~~e~~~~~~~~~~~~~~~~~~~~~ 347 (1032)
+.... +..+.++..+ --|++|++.++.|+.. -..++.++.+++.++.--......+
T Consensus 211 I~~~v--~~~~~~~qr~-------------------~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 269 (775)
T TIGR00763 211 ITKKV--EEKMEKTQRE-------------------YYLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEEVKKVI 269 (775)
T ss_pred HHHHH--HHHHHHHHHH-------------------HHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhhhcCCCEEEEEEecCCCcccccCCCceEEEecCCCCCceeEEeCCcCceeeec
Q 001679 348 VAQCEDFKMKYS--EEQAKRKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCATVVDFDAAKDGELGVLTGSSTRKTFKF 425 (1032)
Q Consensus 348 ~~~~~~l~~~~~--~e~~~Rr~l~n~~~elkgnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~F~F 425 (1032)
..+...|+..-. .|-..-|.+...+.++.=+-..+-........+. |
T Consensus 270 ~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~-------------------------------l 318 (775)
T TIGR00763 270 EKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEI-------------------------------L 318 (775)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHH-------------------------------h
Q ss_pred ce-EECCCCCchhhhhcc-hHHHHHHhcCcceEEEeecccCCCcce
Q 001679 426 DR-VFTPNDGQVDVFADA-SPLVISVLDGYNVCIFAYGQTGTGKTF 469 (1032)
Q Consensus 426 D~-VF~~~~tQ~~vf~~v-~plV~~~l~G~N~~IfaYGqTGSGKTy 469 (1032)
|. +|+.+.--+.+.+-+ .+.+..-..|. .++-||++|+|||+
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~--~lll~GppG~GKT~ 362 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGP--ILCLVGPPGVGKTS 362 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCc--eEEEECCCCCCHHH
No 358
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=56.93 E-value=5.7 Score=45.01 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=25.3
Q ss_pred ECCCCCchhhhhc-chHHHHHHhcC-cceEEEeecccCCCcceEe
Q 001679 429 FTPNDGQVDVFAD-ASPLVISVLDG-YNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 429 F~~~~tQ~~vf~~-v~plV~~~l~G-~N~~IfaYGqTGSGKTyTm 471 (1032)
|-|.+.-+.++++ +...+...+.+ ---..+-||+.|+|||.|.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3343333344433 34444444444 3335678999999999986
No 359
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=56.58 E-value=4.5 Score=42.68 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=17.3
Q ss_pred HHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 445 LVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 445 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.|..++..-. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 3445553333 566689999999988643
No 360
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=56.51 E-value=3.7e+02 Score=31.07 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=8.8
Q ss_pred HHHhHHhhHHHHHHHhc
Q 001679 629 INRSLSALGDVIYSLAT 645 (1032)
Q Consensus 629 INkSL~aLg~VI~aL~~ 645 (1032)
||--+.+|.+-+..|..
T Consensus 57 inDP~~ALqRDf~~l~E 73 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGE 73 (561)
T ss_pred cCChHHHHHHHHHHHhc
Confidence 44455555555555543
No 361
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.31 E-value=4.3e+02 Score=31.83 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=12.2
Q ss_pred HHHHHHhcCcceEEEeec
Q 001679 444 PLVISVLDGYNVCIFAYG 461 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYG 461 (1032)
.-+..+-.|..+.|...+
T Consensus 367 ~di~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 367 NDISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HHHhhcCCCCeEEEEEec
Confidence 345566678888887655
No 362
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=55.96 E-value=2.9e+02 Score=29.79 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001679 711 TSELQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQE 761 (1032)
Q Consensus 711 ~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e 761 (1032)
.+||.-||..|.....+...+...|-.|...+......+...+.....+..
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~ 59 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQD 59 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 457778888888888888888888888887777666665555544444443
No 363
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.77 E-value=3.2e+02 Score=35.54 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=16.6
Q ss_pred hcCcceEEEeecccCCCcceEeeccCCCCchhHhHHHHHHH
Q 001679 450 LDGYNVCIFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFE 490 (1032)
Q Consensus 450 l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~ 490 (1032)
+.|+.+..+-.|- | .|++-+++.+.+.
T Consensus 730 ~~g~~~v~IIHGk-G-------------tG~Lr~~v~~~L~ 756 (782)
T PRK00409 730 LAGYGEVLIIHGK-G-------------TGKLRKGVQEFLK 756 (782)
T ss_pred HcCCCEEEEEcCC-C-------------hhHHHHHHHHHHc
Confidence 3677777777664 1 3666666666553
No 364
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.75 E-value=5.3e+02 Score=32.73 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001679 714 LQKMKVMLEKARQDSRSKDESLRKLEENLQNL 745 (1032)
Q Consensus 714 l~~lk~~l~~~~~e~~~~~~~~~~le~~l~~l 745 (1032)
+..+...++.++.........+..+..+++.+
T Consensus 105 l~~l~~~le~lr~qk~eR~~ef~el~~qie~l 136 (660)
T KOG4302|consen 105 LESLKPYLEGLRKQKDERRAEFKELYHQIEKL 136 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333444444444443
No 365
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=55.74 E-value=6.7 Score=45.93 Aligned_cols=44 Identities=30% Similarity=0.421 Sum_probs=34.0
Q ss_pred eeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcce
Q 001679 422 TFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTF 469 (1032)
Q Consensus 422 ~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTy 469 (1032)
.=+||.|+| |+.+.....|+-.-+-.|.=...+-||+.|+|||.
T Consensus 20 P~~lde~vG----Q~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTT 63 (436)
T COG2256 20 PKSLDEVVG----QEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTT 63 (436)
T ss_pred CCCHHHhcC----hHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHH
Confidence 345677766 77788776777666667888888999999999985
No 366
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=55.71 E-value=7.3 Score=41.92 Aligned_cols=19 Identities=42% Similarity=0.601 Sum_probs=13.9
Q ss_pred cceEEEeecccCCCcceEe
Q 001679 453 YNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKTyTm 471 (1032)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5668999999999999764
No 367
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=55.65 E-value=5.1e+02 Score=32.43 Aligned_cols=185 Identities=17% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhh----------------hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHhhhhhh
Q 001679 713 ELQKMKVMLEKARQDSRS----------------KDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQVSLKSNL 776 (1032)
Q Consensus 713 el~~lk~~l~~~~~e~~~----------------~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~~~~~~l 776 (1032)
.++.++..+.++...... ..+....|.++..++...+...+..+..++..+.....++......
T Consensus 146 ~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 146 TVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q ss_pred ----hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001679 777 ----HDQSDKQASQLLERLKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERESESHSISLQHKV 852 (1032)
Q Consensus 777 ----~~~~e~~~~~l~~~~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~e~~~~~l~~k~ 852 (1032)
..-...++.-++.++...+..+-.++.+...+...+..........--..+......+... +..++.|-.-+
T Consensus 226 ~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~k----d~~i~~L~~di 301 (629)
T KOG0963|consen 226 YDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQK----DSEIAQLSNDI 301 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHH----HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 001679 853 KELESKLKEQERQHV-ESLMLRQKIKELEDKLKEQEQQFQCRLSRDFADLIK 903 (1032)
Q Consensus 853 ~eLe~k~~~~~~~~~-e~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~~~~ 903 (1032)
+.++.-+.+..+.+. .+..|+.+....-..+......++.. ..|+++-+
T Consensus 302 ~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--sDYeeIK~ 351 (629)
T KOG0963|consen 302 ERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR--SDYEEIKK 351 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHH
No 368
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=55.47 E-value=4.1 Score=48.73 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=39.5
Q ss_pred HHHHhcCcceEEEeecccCCCcceEeeccC---------C-----CCchhHh---------HHHHHHHHHHhcCCCceee
Q 001679 446 VISVLDGYNVCIFAYGQTGTGKTFTMEGTE---------Q-----SRGVNYR---------TLEQLFEIAKERSETFTYN 502 (1032)
Q Consensus 446 V~~~l~G~N~~IfaYGqTGSGKTyTm~G~~---------~-----~~GIipr---------al~~LF~~~~~~~~~~~~~ 502 (1032)
+..+.+|... +|++|||||||+...++- . ..|..|+ .+..||+... ...|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~----k~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR----KFSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH----hhccc
Confidence 3345566665 899999999999987641 0 1112222 2455665554 34677
Q ss_pred eeeeEEEEEcC
Q 001679 503 ISVSVLEVYNE 513 (1032)
Q Consensus 503 v~vS~~EIYnE 513 (1032)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 77888888976
No 369
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.14 E-value=3.1e+02 Score=35.63 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=5.5
Q ss_pred cCcceEEEeec
Q 001679 451 DGYNVCIFAYG 461 (1032)
Q Consensus 451 ~G~N~~IfaYG 461 (1032)
.|+.+..+-.|
T Consensus 720 ~g~~~v~IIHG 730 (771)
T TIGR01069 720 AGYEVVLIIHG 730 (771)
T ss_pred CCCCEEEEEcC
Confidence 46555544443
No 370
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=55.13 E-value=4.9 Score=45.24 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=24.2
Q ss_pred CchhhhhcchHHHHHHhc--CcceEEEeecccCCCcceEe
Q 001679 434 GQVDVFADASPLVISVLD--GYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 434 tQ~~vf~~v~plV~~~l~--G~N~~IfaYGqTGSGKTyTm 471 (1032)
.|+++...+..++..... +....++-||++|+|||+..
T Consensus 8 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 8 GQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 466666665555554432 22234677999999999765
No 371
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=54.89 E-value=4.8 Score=38.58 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=13.0
Q ss_pred EEeecccCCCcceEe
Q 001679 457 IFAYGQTGTGKTFTM 471 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm 471 (1032)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999864
No 372
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=54.71 E-value=5.3 Score=45.96 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=20.5
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..++..++.+. ..|+..|.||||||.+|.
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34555555433 347788999999999883
No 373
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=54.47 E-value=5.2e+02 Score=32.17 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=13.5
Q ss_pred CCCCchhHhHHHHHHHHH
Q 001679 475 EQSRGVNYRTLEQLFEIA 492 (1032)
Q Consensus 475 ~~~~GIipral~~LF~~~ 492 (1032)
+++.||+-+++..||..+
T Consensus 490 ~~~~g~~~~~~s~~~S~l 507 (582)
T PF09731_consen 490 PEGAGLLGHLLSYLFSLL 507 (582)
T ss_pred CCCCCHHHHHHHHHHhee
Confidence 456788888888888644
No 374
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=54.23 E-value=81 Score=38.42 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=10.4
Q ss_pred hcCcceEEEeecccCC
Q 001679 450 LDGYNVCIFAYGQTGT 465 (1032)
Q Consensus 450 l~G~N~~IfaYGqTGS 465 (1032)
+.--.+-|-|||-+=-
T Consensus 525 V~keDGRvqA~GWSLP 540 (832)
T KOG2077|consen 525 VQKEDGRVQAFGWSLP 540 (832)
T ss_pred hhccccceeeeccccc
Confidence 4455667888886443
No 375
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.84 E-value=97 Score=33.56 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001679 244 NECHEAWMSLTAANEQL 260 (1032)
Q Consensus 244 ~e~~~~~~~~~~~~~~~ 260 (1032)
.+|++++..+++.+.+|
T Consensus 138 ee~kekl~E~~~EkeeL 154 (290)
T COG4026 138 EELKEKLEELQKEKEEL 154 (290)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445444444444443
No 376
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=53.50 E-value=5.4 Score=45.88 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..++..++.++ +.|+..|.||||||.++.
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 45555566666 778999999999998864
No 377
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.50 E-value=67 Score=34.88 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001679 307 SDLQEKVKMMKKEHSQLSRE 326 (1032)
Q Consensus 307 ~~l~~~~~~~~~e~~~l~~e 326 (1032)
..|+.+.+.+..|+..|.++
T Consensus 182 ~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHHHHHHcccHHHHHHHH
Confidence 34444444444444444433
No 378
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=53.45 E-value=4.4 Score=51.60 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhh
Q 001679 716 KMKVMLEKARQDSR 729 (1032)
Q Consensus 716 ~lk~~l~~~~~e~~ 729 (1032)
.++..++.++.+..
T Consensus 243 ~l~~ql~~L~~el~ 256 (713)
T PF05622_consen 243 DLRAQLRRLREELE 256 (713)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 379
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=53.42 E-value=2.2e+02 Score=27.59 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001679 281 VEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMK 317 (1032)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (1032)
+.++.++|+.....++.....+...+..|+.++..+.
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444344444444444444433
No 380
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=53.19 E-value=3.5e+02 Score=29.82 Aligned_cols=45 Identities=9% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 791 LKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLK 835 (1032)
Q Consensus 791 ~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~ 835 (1032)
.......+..+..++..++..+.+........++.....+..++.
T Consensus 87 ~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~ 131 (247)
T PF06705_consen 87 QEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELN 131 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334445555666666666665555444433333333333333333
No 381
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=52.56 E-value=2.6e+02 Score=28.18 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCE
Q 001679 347 LVAQCEDFKMKYSEEQAKRKELYNQIQQTRGNI 379 (1032)
Q Consensus 347 ~~~~~~~l~~~~~~e~~~Rr~l~n~~~elkgnI 379 (1032)
...+.++|..-|-.....|.++-.+|.++-..|
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 345666777777777788888888888776544
No 382
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.34 E-value=1.7e+02 Score=26.05 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001679 301 YWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNK 339 (1032)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~ 339 (1032)
+-.+.|..|+-.++.+|+...+|.+|+.+++...+.|..
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777666655544443
No 383
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=52.17 E-value=5 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=16.5
Q ss_pred CcceEEEeecccCCCcceEeec
Q 001679 452 GYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 452 G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
-.+..++..|..|||||+||..
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHHHH
Confidence 3677788889999999999854
No 384
>PRK10869 recombination and repair protein; Provisional
Probab=52.09 E-value=5.6e+02 Score=31.88 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=20.6
Q ss_pred EeeccCCCCchhHhHHHHHHHHHHhcCC
Q 001679 470 TMEGTEQSRGVNYRTLEQLFEIAKERSE 497 (1032)
Q Consensus 470 Tm~G~~~~~GIipral~~LF~~~~~~~~ 497 (1032)
++.=+..+.||=+.+...++..+.....
T Consensus 455 ~li~DEpd~gld~~~~~~v~~~l~~l~~ 482 (553)
T PRK10869 455 ALIFDEVDVGISGPTAAVVGKLLRQLGE 482 (553)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhc
Confidence 4445677888888888888888776543
No 385
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=52.03 E-value=4.8 Score=52.30 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001679 349 AQCEDFKMKYSEEQAKRKELYNQIQQT 375 (1032)
Q Consensus 349 ~~~~~l~~~~~~e~~~Rr~l~n~~~el 375 (1032)
.++++++..+..+...|-.|...+..+
T Consensus 243 ~qLeelk~~leeEtr~k~~L~~~l~~l 269 (859)
T PF01576_consen 243 SQLEELKRQLEEETRAKQALEKQLRQL 269 (859)
T ss_dssp ---------------------------
T ss_pred HHHHhhHHHHHhHhhhhhhhHHHHHHH
Confidence 444444444444444444444444433
No 386
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=52.00 E-value=8.5 Score=48.33 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=24.9
Q ss_pred cceEEEeecccCCCcceEe--------eccC--CCCchh----HhHHHHH
Q 001679 453 YNVCIFAYGQTGTGKTFTM--------EGTE--QSRGVN----YRTLEQL 488 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKTyTm--------~G~~--~~~GIi----pral~~L 488 (1032)
.|-.++.+|+||||||.-+ ||++ .++|+| ||-+..|
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 4566778899999999887 3433 347777 5655444
No 387
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=51.90 E-value=6.2 Score=38.77 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.6
Q ss_pred EEEeecccCCCcceEe
Q 001679 456 CIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm 471 (1032)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999763
No 388
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=51.70 E-value=7.3 Score=39.39 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=18.8
Q ss_pred HHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 445 LVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 445 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
++..++++. ..++..|+||||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344555552 3446678999999998755
No 389
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=51.52 E-value=6.1e+02 Score=32.15 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=5.7
Q ss_pred CCCCcchhhhcccc
Q 001679 652 YRNSKLTHLLQDSL 665 (1032)
Q Consensus 652 yRdSKLT~LLqdsL 665 (1032)
|-|-+|.--|++-+
T Consensus 127 f~NE~lSlKLee~i 140 (786)
T PF05483_consen 127 FENEKLSLKLEEEI 140 (786)
T ss_pred HhhhHHhHHHHHHH
Confidence 44444444444333
No 390
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=51.08 E-value=7.5 Score=49.49 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=27.6
Q ss_pred eecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 423 FKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 423 F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
-+||.+++ |+.+-.....+...+-.|.-..++-||++|+|||++..
T Consensus 25 ~tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 25 RTLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred CcHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 34555554 44444332333333334555577889999999998864
No 391
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=50.90 E-value=8.2 Score=40.40 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=18.8
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceE
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyT 470 (1032)
..++.++.|+| ++..++||+|||.+
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHH
Confidence 34455666887 56778999999977
No 392
>PLN03025 replication factor C subunit; Provisional
Probab=50.89 E-value=6.5 Score=44.91 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=14.6
Q ss_pred EEEeecccCCCcceEeec
Q 001679 456 CIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm~G 473 (1032)
.++-||++|+|||++...
T Consensus 36 ~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILSGPPGTGKTTSILA 53 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 356699999999998754
No 393
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=50.86 E-value=3.3e+02 Score=28.93 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=5.5
Q ss_pred CceEEEEeec
Q 001679 163 EGTVVVRFEG 172 (1032)
Q Consensus 163 dg~L~I~f~~ 172 (1032)
+|...+.|.+
T Consensus 17 ~~~~~~q~vS 26 (189)
T PF10211_consen 17 DGQLWIQFVS 26 (189)
T ss_pred CCeeeEeeeC
Confidence 4556666643
No 394
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=50.69 E-value=91 Score=37.58 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=13.5
Q ss_pred EEEeecccCCCcceEe
Q 001679 456 CIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm 471 (1032)
.|+-||++|||||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999998765
No 395
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.68 E-value=1.4e+02 Score=30.94 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001679 711 TSELQKMKVMLEKARQDSRSKDESLRKLEENLQNL 745 (1032)
Q Consensus 711 ~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~l 745 (1032)
..++..+...+..++.+.......+..|+.++..|
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444444444433
No 396
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=50.56 E-value=4.1 Score=40.44 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=18.3
Q ss_pred cchHHHHHHhcC----cceEEEeecccCCCcceE
Q 001679 441 DASPLVISVLDG----YNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 441 ~v~plV~~~l~G----~N~~IfaYGqTGSGKTyT 470 (1032)
.+...|...+.. ..-.+--.|+||+||||+
T Consensus 36 ~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 36 VVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFV 69 (127)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHH
Confidence 344444444433 223445579999999996
No 397
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=50.47 E-value=6.9 Score=40.99 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=20.2
Q ss_pred chHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 442 ASPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 442 v~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..+++..++.. ...|.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34555555543 3346667999999998874
No 398
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=50.11 E-value=4.2 Score=38.71 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=13.2
Q ss_pred EEeecccCCCcceEe
Q 001679 457 IFAYGQTGTGKTFTM 471 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm 471 (1032)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999876
No 399
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=50.09 E-value=5.8e+02 Score=31.43 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001679 874 QKIKELE 880 (1032)
Q Consensus 874 ~k~~~Le 880 (1032)
+..++++
T Consensus 320 ~~~~~~~ 326 (511)
T PF09787_consen 320 EQPQELS 326 (511)
T ss_pred HHHHHHH
Confidence 3333333
No 400
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=50.01 E-value=5.3 Score=46.32 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=20.3
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEeec
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
..++..++.+ ...|+..|+||||||.+|..
T Consensus 152 ~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 152 EAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 4455555532 33467789999999998853
No 401
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=49.84 E-value=6.8 Score=49.68 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=27.4
Q ss_pred hhhhcchHHHHHHh-cCcceEEEeecccCCCcceEe
Q 001679 437 DVFADASPLVISVL-DGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 437 ~vf~~v~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 471 (1032)
-||..+......++ .|.|-||+..|.+|||||+|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 47766654445443 689999999999999999985
No 402
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=49.54 E-value=5.5 Score=48.07 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred cCcccccccchhHHHHHH-----H----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001679 204 NNCAAEIEVPSAQKKLMR-----I----KATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAF 272 (1032)
Q Consensus 204 ~~~~~~~~~~~~~~k~~~-----~----k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1032)
.+.+||+...+.+--... . +...+|++||..|++.+.+-.+...+-..+|..-.++..++..+.+..++
T Consensus 341 eRT~AWv~NM~~~s~D~E~~~~~~~~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLe 418 (495)
T PF12004_consen 341 ERTAAWVSNMNHLSADIEGKLKEYRESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLE 418 (495)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred hhhhhhhhcCCCccccchhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 446788876443331111 0 22357999999999887633333333333333334445555555555444
No 403
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=49.32 E-value=6.7 Score=37.42 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEeecccCCCcceEe
Q 001679 457 IFAYGQTGTGKTFTM 471 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm 471 (1032)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678999999998764
No 404
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.22 E-value=2.7e+02 Score=35.75 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=12.1
Q ss_pred ceEEEeecccCCCcceEeec
Q 001679 454 NVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyTm~G 473 (1032)
.+..|+-...|.|||++-.+
T Consensus 532 kvI~vtS~~~g~GKTtva~n 551 (726)
T PRK09841 532 NILMITGATPDSGKTFVSST 551 (726)
T ss_pred eEEEEecCCCCCCHHHHHHH
Confidence 44444444569999887543
No 405
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.11 E-value=4.2e+02 Score=32.98 Aligned_cols=128 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001679 226 EKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAA 305 (1032)
Q Consensus 226 ~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 305 (1032)
+.|.....++...+. ++...+.+.-.++.....+++-.=.... .++.....|..+..||......+-..
T Consensus 258 ~~~d~~l~~~~~~l~-------ea~~~l~ea~~el~~~~~~le~Dp~~L~----~ve~Rl~~L~~l~RKY~~~~~~l~~~ 326 (557)
T COG0497 258 SEYDGKLSELAELLE-------EALYELEEASEELRAYLDELEFDPNRLE----EVEERLFALKSLARKYGVTIEDLLEY 326 (557)
T ss_pred hccChhHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHH
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001679 306 VSDLQEKVKMMK---KEHSQLSREAHECADSIPELNKMVIGVQALVAQCEDFKMKYSEEQAKRKELYNQIQQTR 376 (1032)
Q Consensus 306 ~~~l~~~~~~~~---~e~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~elk 376 (1032)
...++.++..+. ....+|+.++..+.....+.-..+.......+. .+.+.+++.+++|.
T Consensus 327 ~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~------------~L~~~v~~eL~~L~ 388 (557)
T COG0497 327 LDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAK------------ELEKEVTAELKALA 388 (557)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhcC
No 406
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=49.05 E-value=3.4e+02 Score=28.43 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-----chhHHHHHHHHHHHHH
Q 001679 218 KLMRIKATEKYEKKIEELNKQFQ-LKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTL-----TLDQTVEKQAENLINI 291 (1032)
Q Consensus 218 k~~~~k~~~~~~~~ie~l~~e~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~l~~~ 291 (1032)
|--..+..-.++..+.+|+.+.+ ....+....-.....+..+++++..+|+..+.... .++-.-..-.++....
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~ 125 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQ 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 292 TSRYECDKKYWAAAVSDLQEKVKMMKKEHSQL 323 (1032)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l 323 (1032)
..++..-...+...+..|+.+++.+|-+..++
T Consensus 126 ~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 126 ELKIQELNNKIDTEIANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.01 E-value=6.2 Score=46.51 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.6
Q ss_pred eEEEeecccCCCcceEee
Q 001679 455 VCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm~ 472 (1032)
..|+.+|+||+|||.|+.
T Consensus 175 ~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIA 192 (388)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467889999999999973
No 408
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=48.81 E-value=6.6 Score=45.85 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 433 DGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 433 ~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
..|..+|+.+...+.. .....+|.-|+-||||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 4588888876443333 44456788999999999976
No 409
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=48.62 E-value=5 Score=42.46 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.0
Q ss_pred EEEeecccCCCcceEee
Q 001679 456 CIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm~ 472 (1032)
-++.+|.||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999999874
No 410
>PRK06547 hypothetical protein; Provisional
Probab=48.58 E-value=12 Score=39.05 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=19.3
Q ss_pred HHHHHhcCcceEEEeecccCCCcceEe
Q 001679 445 LVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 445 lV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
++..+..+.-..|..+|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555556666777899999998754
No 411
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=48.53 E-value=5.9e+02 Score=31.11 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Q 001679 848 LQHKVKELESKLKEQERQH-VESLMLRQKIKELED 881 (1032)
Q Consensus 848 l~~k~~eLe~k~~~~~~~~-~e~~~l~~k~~~Le~ 881 (1032)
+.++++.++.++.+....+ .+...|..+++.|.+
T Consensus 145 l~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 145 LREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554444333221 112345555555543
No 412
>PHA00729 NTP-binding motif containing protein
Probab=48.41 E-value=12 Score=41.01 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=20.8
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
.++..+..|-=..|+.+|.+|+||||...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 34555554443579999999999998754
No 413
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=48.24 E-value=1.6e+02 Score=35.19 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhh
Q 001679 231 KIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYEC 297 (1032)
Q Consensus 231 ~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 297 (1032)
-+|.|+...|-. .+.+..-.....+|+.-.+.||.+.+.+.+.+...+++|...-+.+...|+.
T Consensus 500 S~eTll~niq~l---lkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~qk 563 (641)
T KOG3915|consen 500 SIETLLTNIQGL---LKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQK 563 (641)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555411 2223333333444555556677776666777777788777655555444443
No 414
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=48.14 E-value=99 Score=41.42 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=21.4
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
..+|..++.|.++.+. -+||+|||.+.
T Consensus 466 ~eaI~aiL~GrDVLVi--mPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFVL--MPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEEE--cCCCccHHHHH
Confidence 4567788999996554 59999999874
No 415
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=48.08 E-value=7.4 Score=44.97 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=19.9
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEee
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 472 (1032)
..++..++.+. ..|+..|.||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 45555555433 346678999999999873
No 416
>PRK13764 ATPase; Provisional
Probab=48.03 E-value=7.5 Score=48.28 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=17.4
Q ss_pred CcceEEEeecccCCCcceEeec
Q 001679 452 GYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 452 G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.....|+..|+||||||+++..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 3344589999999999999843
No 417
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.87 E-value=5.6e+02 Score=30.65 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=4.2
Q ss_pred hHhHHHHHHHH
Q 001679 684 LSETLSSLNFA 694 (1032)
Q Consensus 684 ~~ETl~TL~fA 694 (1032)
+.+||+.+-|.
T Consensus 74 ~~~sL~~~~l~ 84 (446)
T KOG4438|consen 74 HAESLQFKLLC 84 (446)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 418
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=47.65 E-value=2.5e+02 Score=33.30 Aligned_cols=27 Identities=22% Similarity=0.115 Sum_probs=15.4
Q ss_pred HHHhcCcceEEEeecccCCCcceEeec
Q 001679 447 ISVLDGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 447 ~~~l~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.+.|.|.++.|-+.--+-.||-..--|
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeec
Confidence 345667666666666556666444433
No 419
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=47.40 E-value=3.1e+02 Score=27.47 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhhhH
Q 001679 225 TEKYEKKIEELNKQFQLKTN 244 (1032)
Q Consensus 225 ~~~~~~~ie~l~~e~~~~~~ 244 (1032)
.+..+.+...|..+++...+
T Consensus 22 ~~~v~~~l~~LEae~q~L~~ 41 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQLEQ 41 (126)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34455566667777764333
No 420
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.35 E-value=6.3 Score=44.36 Aligned_cols=18 Identities=44% Similarity=0.541 Sum_probs=14.0
Q ss_pred EEEeecccCCCcceEeec
Q 001679 456 CIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 456 ~IfaYGqTGSGKTyTm~G 473 (1032)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 445559999999999844
No 421
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=46.96 E-value=9.1e+02 Score=32.82 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHhh--hhhhhhhHHHHHHHHHHHHHhHH
Q 001679 718 KVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQVSL--KSNLHDQSDKQASQLLERLKGRE 795 (1032)
Q Consensus 718 k~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~~~--~~~l~~~~e~~~~~l~~~~~~~~ 795 (1032)
+...-+.-+..-..-+.+++.......++..+..-+....+.+.++..+...... ...-..+++.+..+....+.+.+
T Consensus 43 ~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q 122 (1109)
T PRK10929 43 QAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKS 122 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001679 796 ELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKL-----------KEQERESESHSISLQHKVKELESKLKEQER 864 (1032)
Q Consensus 796 e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l-----------~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~ 864 (1032)
+..+..+.++.+....+.+.-+.. ....+.+.++...+ ..+...++.+...++.++..++..+.....
T Consensus 123 ~~l~~~~~~~~~~~~~l~~~pq~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~ 201 (1109)
T PRK10929 123 RQAQQEQDRAREISDSLSQLPQQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANN 201 (1109)
T ss_pred HHHHHHhhhhHHHHHHHhhchhhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 001679 865 QHVESLMLRQKIKELEDKLKEQEQQFQCRLSRDFADLIKYT 905 (1032)
Q Consensus 865 ~~~e~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~~~~~~ 905 (1032)
..+.....++-...--+.++...+.+|....+.+-..++.+
T Consensus 202 ~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~ 242 (1109)
T PRK10929 202 RQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERA 242 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 422
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.75 E-value=1.1e+02 Score=29.77 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001679 299 KKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADS 333 (1032)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~ 333 (1032)
++.+.+.+..+..++..+-.++..|+..+..+.+.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EE 37 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEE 37 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777776655554444
No 423
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=46.70 E-value=5.6e+02 Score=30.32 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001679 349 AQCEDFKMKYSEEQAKRKELYN 370 (1032)
Q Consensus 349 ~~~~~l~~~~~~e~~~Rr~l~n 370 (1032)
.-...|..++.+.+...+.|++
T Consensus 331 ~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 331 ESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 424
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=46.50 E-value=16 Score=40.02 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=26.4
Q ss_pred CCCchhhhhcchHHHHHHhc-C-cceEEEeecccCCCcce
Q 001679 432 NDGQVDVFADASPLVISVLD-G-YNVCIFAYGQTGTGKTF 469 (1032)
Q Consensus 432 ~~tQ~~vf~~v~plV~~~l~-G-~N~~IfaYGqTGSGKTy 469 (1032)
-..|+.+-.....++..+.. | .=..++-||+.|.|||.
T Consensus 26 fiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHH
T ss_pred ccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhH
Confidence 34588898888888887764 3 23457889999999975
No 425
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=46.27 E-value=4.9e+02 Score=29.51 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=4.7
Q ss_pred cccCCCCcchhh
Q 001679 649 HIPYRNSKLTHL 660 (1032)
Q Consensus 649 hiPyRdSKLT~L 660 (1032)
.||-=.|..+.+
T Consensus 25 ~vP~iesa~~~~ 36 (297)
T PF02841_consen 25 SVPCIESAWQAV 36 (297)
T ss_dssp S--BHHHHHHHH
T ss_pred CCCCchHHHHHH
Confidence 455544444444
No 426
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=46.16 E-value=5.8e+02 Score=30.71 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=8.6
Q ss_pred hhcCCCEEEEEEecC
Q 001679 373 QQTRGNIRVFCRCRP 387 (1032)
Q Consensus 373 ~elkgnIrV~~RvRP 387 (1032)
--..+|+||.-+--|
T Consensus 404 ~~~~~n~rvIs~A~~ 418 (458)
T COG3206 404 ASPIGNARVISPAVP 418 (458)
T ss_pred cCCCCceeEeccccC
Confidence 345567777754444
No 427
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=46.04 E-value=3.2e+02 Score=32.98 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=23.3
Q ss_pred chhhhccccCCCcceEEEEEeCCCCcChHhHHHHHHHHHHhcc
Q 001679 657 LTHLLQDSLGGDSKTLMFVQISPSEQDLSETLSSLNFATQVRG 699 (1032)
Q Consensus 657 LT~LLqdsLgGnskt~mI~~ISP~~~~~~ETl~TL~fA~r~~~ 699 (1032)
|..||.-+=|-||++-=++|..-......-+.+-|.|+.++..
T Consensus 511 ~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lir 553 (790)
T PF07794_consen 511 LANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIR 553 (790)
T ss_pred HHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHH
Confidence 4445555555555544344444333344446667777777654
No 428
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.87 E-value=10 Score=45.13 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=20.4
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34556778987 778899999999763
No 429
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=45.84 E-value=7.8e+02 Score=31.71 Aligned_cols=194 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCCcChHhHHHHHHHHHHhccccccccccccChHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-hhhhHHHHH
Q 001679 679 PSEQDLSETLSSLNFATQVRGVELGPARKQIDTSELQKMKVMLEKARQDSRSKDESLRKLEENLQNLENR-AKYKDQTYK 757 (1032)
Q Consensus 679 P~~~~~~ETl~TL~fA~r~~~i~~~p~~~~~~~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~-~~~~~~~~~ 757 (1032)
|....+.+-+..|+-..+++.+.-+... -..|+..+++--.+....-+...+++......... .........
T Consensus 528 ~n~p~lk~Kle~Lk~~~~~~~~s~g~~~-------a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~ 600 (762)
T PLN03229 528 PNYLSLKYKLDMLNEFSRAKALSEKKSK-------AEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDD 600 (762)
T ss_pred cccHHHHHHHHHHHHHHHhhhhcccchh-------hhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCH
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHHHHHH--HHHHHH
Q 001679 758 NQQEKVKELEGQVSLKSNLHDQSDKQASQLLERLKGREELCSTL---------QIKVKELENRLRDRQQSES--AIFQQK 826 (1032)
Q Consensus 758 ~~~e~~~~le~~~~~~~~l~~~~e~~~~~l~~~~~~~~e~~~~l---------~~~l~ele~~l~~~~~~~~--~~~~~k 826 (1032)
.+++++..+.+++. .+++.-....-.+..+....--.. +++++.+++.++++.+... ..+.++
T Consensus 601 ~lkeki~~~~~Ei~------~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~LK~k 674 (762)
T PLN03229 601 DLKEKVEKMKKEIE------LELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKSK 674 (762)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001679 827 VKDIENKLKEQERESESHSISLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQ 888 (1032)
Q Consensus 827 ~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~ 888 (1032)
++.+...+ .+.-..=-....+||+.|+..++..-..--....|+++-.+|+.++....+
T Consensus 675 ~E~Lk~Ev---aka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~~~~ 733 (762)
T PLN03229 675 IELLKLEV---AKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARE 733 (762)
T ss_pred HHHHHHHH---HhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHhhc
No 430
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=45.78 E-value=7.7 Score=40.39 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.4
Q ss_pred eEEEeecccCCCcceEe
Q 001679 455 VCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm 471 (1032)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999854
No 431
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=45.77 E-value=4.6e+02 Score=29.03 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hh--------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 221 RIKATEKYEKKIEELNKQFQ---LK--------TNECHEAWMSLTAANEQLEKVRMEL 267 (1032)
Q Consensus 221 ~~k~~~~~~~~ie~l~~e~~---~~--------~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (1032)
+.|++.+|...+..+..+.. .. .-...+.|..+..--+.+.+....+
T Consensus 31 raK~d~eya~~L~~~~~q~~k~~~~~~~~~~~~~s~i~~sW~~il~QTE~isk~~~~~ 88 (237)
T cd07685 31 RAKSDREYSGMLHHMSAQVEKLDRSQHGALSMLSSPISQSWAVLVSQTETLSQVLRKH 88 (237)
T ss_pred HHHhhHHHHHHHHHHHHhhccccccchhhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788889988888887742 11 1246678988755555554444433
No 432
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=45.42 E-value=7.7 Score=43.04 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=13.0
Q ss_pred eEEEeecccCCCcceE
Q 001679 455 VCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyT 470 (1032)
-.|+-||++|+|||++
T Consensus 152 knVLFyGppGTGKTm~ 167 (368)
T COG1223 152 KNVLFYGPPGTGKTMM 167 (368)
T ss_pred ceeEEECCCCccHHHH
Confidence 3567899999999764
No 433
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.35 E-value=4.3e+02 Score=32.52 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred EEEECCEEEecccccccccCCCCCeEEEEEEEEEcCCceEEEEeeccCCCceeEEEEEeecCCCCCCCCCccccccccCc
Q 001679 127 NVFVQEEKVVSDFDIFSIVGANKPLQLVDIGVSVKEEGTVVVRFEGISGSPAVSGICIRRASKVLSVPQTSHEFLKCNNC 206 (1032)
Q Consensus 127 dV~Ing~~vl~~fDI~~~aG~~~a~~~~~f~V~v~~dg~L~I~f~~~~g~p~InaIEI~k~~~~~~~~~~~~~~~~~~~~ 206 (1032)
.||-+|..|.....+.-.+|.+...+. .+...++ ..+|.|...+..+ .-+.++.+.........++
T Consensus 6 Tvy~~~A~Vtr~~~v~l~~G~~~i~i~-~lp~~ld-~~Slrv~~~g~~~-~~~~~v~~~~~~~~~~~~~----------- 71 (525)
T TIGR02231 6 TVYPDRAEVTRSGKVDLPSGVNELVLK-NLPLTLQ-DDSLRVSGEGLAV-ASLVTVSTWRERTSRPDPE----------- 71 (525)
T ss_pred EEecCCcEEEEEEEEEeCCcceEEEEe-CCCCccC-cCcEEEEecCCce-EEEEEEEEeecCCCcCCcH-----------
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHH-----
Q 001679 207 AAEIEVPSAQKKLMRIKATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTV----- 281 (1032)
Q Consensus 207 ~~~~~~~~~~~k~~~~k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----- 281 (1032)
...+.++++..++..-+.+.....-++..+.....+....
T Consensus 72 -----------------------------------~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (525)
T TIGR02231 72 -----------------------------------RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIK 116 (525)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q ss_pred ------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001679 282 ------EKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHEC 330 (1032)
Q Consensus 282 ------~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~ 330 (1032)
.....++..+...|......+..++..+..+++.++.++..|+.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 117 DSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 434
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.30 E-value=6.8e+02 Score=30.90 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 001679 356 MKYSEEQAKRKELYNQIQQTR 376 (1032)
Q Consensus 356 ~~~~~e~~~Rr~l~n~~~elk 376 (1032)
.-+..-..+||+-.-.+.++|
T Consensus 549 ~HL~nLr~errk~Lee~lemK 569 (654)
T KOG4809|consen 549 AHLANLRIERRKQLEEILEMK 569 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334455578888888888888
No 435
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=45.25 E-value=13 Score=44.54 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=19.1
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceE
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyT 470 (1032)
..+..+++|.| +++.++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 34556778988 56677999999965
No 436
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=45.06 E-value=6.8e+02 Score=30.82 Aligned_cols=47 Identities=15% Similarity=0.350 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 846 ISLQHKVKELESKLKEQERQHV-ESLMLRQKIKELEDKLKEQEQQFQC 892 (1032)
Q Consensus 846 ~~l~~k~~eLe~k~~~~~~~~~-e~~~l~~k~~~Le~~l~~~~~~~q~ 892 (1032)
.....++..|+..+.-.+.+=+ .+..+-+.+..|.++|..+.++++.
T Consensus 465 ~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 465 KEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544333311 2334555555666666666655553
No 437
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=44.98 E-value=5.8e+02 Score=31.58 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001679 305 AVSDLQEKVKMMKKEHSQLSRE 326 (1032)
Q Consensus 305 ~~~~l~~~~~~~~~e~~~l~~e 326 (1032)
+|.+|+++|+.+|++....+++
T Consensus 358 ~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 358 KIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555554444433
No 438
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=44.50 E-value=9.7 Score=43.10 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=16.9
Q ss_pred cCc-ceEEEeecccCCCcceEee
Q 001679 451 DGY-NVCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 451 ~G~-N~~IfaYGqTGSGKTyTm~ 472 (1032)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 3567779999999998864
No 439
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=44.41 E-value=7.9 Score=40.97 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=15.0
Q ss_pred CcceEEEeecccCCCcceEe
Q 001679 452 GYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 452 G~N~~IfaYGqTGSGKTyTm 471 (1032)
.....||..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 44568999999999998765
No 440
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=44.39 E-value=7.4 Score=49.66 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 001679 869 SLMLRQKIKELEDKLKEQEQQFQCRLSRDFADLIKYT 905 (1032)
Q Consensus 869 ~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~~~~~~ 905 (1032)
...|+.++..++.+...+.+....+...|+..+..+.
T Consensus 608 ~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~ll 644 (722)
T PF05557_consen 608 IAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLL 644 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666677777777777777777777777654443
No 441
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.38 E-value=4e+02 Score=27.97 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=5.4
Q ss_pred HhHHHHHHHHHH
Q 001679 685 SETLSSLNFATQ 696 (1032)
Q Consensus 685 ~ETl~TL~fA~r 696 (1032)
.+||..|.=+-+
T Consensus 43 qk~Ld~La~~Gk 54 (201)
T KOG4603|consen 43 QKTLDQLAQQGK 54 (201)
T ss_pred HHHHHHHHHcCc
Confidence 445555444333
No 442
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=44.29 E-value=5.5e+02 Score=29.53 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001679 796 ELCSTLQIKVKELENRL 812 (1032)
Q Consensus 796 e~~~~l~~~l~ele~~l 812 (1032)
+....++..+.++...+
T Consensus 107 el~~kFq~~L~dIq~~~ 123 (309)
T PF09728_consen 107 ELSEKFQATLKDIQAQM 123 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 443
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.18 E-value=11 Score=44.85 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=19.2
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
..+..++.|.|+. +-++||||||.+.
T Consensus 37 ~aip~il~g~dvi--~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDVA--GQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcEE--EECCCCchHHHHH
Confidence 3445678999864 4669999999753
No 444
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.91 E-value=5.2e+02 Score=29.16 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001679 309 LQEKVKMMKKEHSQL 323 (1032)
Q Consensus 309 l~~~~~~~~~e~~~l 323 (1032)
|..+|+..+.|+...
T Consensus 195 Le~KIekkk~ELER~ 209 (267)
T PF10234_consen 195 LEAKIEKKKQELERN 209 (267)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 445
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=43.79 E-value=4.1e+02 Score=31.80 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=5.3
Q ss_pred CCcchhhhccc
Q 001679 948 GHQHETRKKRD 958 (1032)
Q Consensus 948 ~~~~~~~~~~~ 958 (1032)
+|-|.++++++
T Consensus 335 GshSyI~~~~~ 345 (447)
T KOG2751|consen 335 GSHSYIKKRMV 345 (447)
T ss_pred cchhHHHHhcc
Confidence 34455555543
No 446
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=43.76 E-value=4.5e+02 Score=28.32 Aligned_cols=119 Identities=22% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhHHHHH
Q 001679 786 QLLERLKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQE----------------RESESHSISLQ 849 (1032)
Q Consensus 786 ~l~~~~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~----------------~~~e~~~~~l~ 849 (1032)
+++.++......+..|.+.+.........+..+....+.+.-.++-.+|+... +....+...++
T Consensus 9 ~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~~~l~ 88 (196)
T PF15272_consen 9 ELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQSEDLQ 88 (196)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q ss_pred HHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 001679 850 HKVKELESKL-KEQERQHVESLMLRQKIKELEDKLKEQEQQFQCRLSRDFADLIKY 904 (1032)
Q Consensus 850 ~k~~eLe~k~-~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~~~~~~ 904 (1032)
.++..|+..+ ......+.+...+.+++..++-+-...+..-+.....+.+.+..+
T Consensus 89 ~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dL 144 (196)
T PF15272_consen 89 SRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADL 144 (196)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
No 447
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=43.53 E-value=5.2e+02 Score=29.09 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 001679 352 EDFKMKYSEEQAKRKELYNQIQQ 374 (1032)
Q Consensus 352 ~~l~~~~~~e~~~Rr~l~n~~~e 374 (1032)
.+++.++.+-.....+|...|-+
T Consensus 157 ~el~~K~~~~k~~~e~Ll~~Lge 179 (268)
T PF11802_consen 157 QELKTKIEKIKEYKEKLLSFLGE 179 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665544
No 448
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.45 E-value=7.8 Score=49.38 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHh
Q 001679 227 KYEKKIEELNKQFQ 240 (1032)
Q Consensus 227 ~~~~~ie~l~~e~~ 240 (1032)
.|-..|..|-...|
T Consensus 130 ~yI~~I~~Ld~~~Q 143 (713)
T PF05622_consen 130 EYIQRIMELDESTQ 143 (713)
T ss_dssp HHHHHHHHS-HHHH
T ss_pred HHHHHHHCCCHHHH
Confidence 44444444444443
No 449
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=43.44 E-value=76 Score=36.85 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=18.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001679 289 INITSRYECDKKYWAAAVSDLQEKVKMMKKE 319 (1032)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e 319 (1032)
..|..-|..++..|...+..+..++..+-.+
T Consensus 283 ~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 283 EKLISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 3455556666666766666666666555444
No 450
>PRK04195 replication factor C large subunit; Provisional
Probab=43.40 E-value=13 Score=45.14 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=25.3
Q ss_pred chhhhhcchHHHHHHhcCc-ceEEEeecccCCCcceEe
Q 001679 435 QVDVFADASPLVISVLDGY-NVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 435 Q~~vf~~v~plV~~~l~G~-N~~IfaYGqTGSGKTyTm 471 (1032)
|..+-..+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3334444555566655665 456888999999999876
No 451
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.40 E-value=7.2e+02 Score=30.67 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=8.1
Q ss_pred hHhHHHHHHHHHHh
Q 001679 684 LSETLSSLNFATQV 697 (1032)
Q Consensus 684 ~~ETl~TL~fA~r~ 697 (1032)
+-.-+.-|+.|.|=
T Consensus 227 lP~ql~~Lk~Gyr~ 240 (570)
T COG4477 227 LPGQLQDLKAGYRD 240 (570)
T ss_pred chHHHHHHHHHHHH
Confidence 34456667766653
No 452
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=43.24 E-value=4.6e+02 Score=28.35 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHh
Q 001679 213 PSAQKKLMRIKATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINIT 292 (1032)
Q Consensus 213 ~~~~~k~~~~k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 292 (1032)
+-.....|..+ +.++.+.++.|..+|. .+|.+....-.++-.....-..+|+..+.+.......+..+...|....
T Consensus 2 ~~~~l~yL~~~-~~e~~~~i~~L~~q~~---~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~ 77 (206)
T PF14988_consen 2 NKEFLEYLKKK-DEEKEKKIEKLWKQYI---QQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFR 77 (206)
T ss_pred cHHHHHHHHhh-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHH-----------HHHH
Q 001679 293 SRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREA--------HECADSIPELNKMVIGVQALVA-----------QCED 353 (1032)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~--------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 353 (1032)
. .+......|..|+.++..+..++.....++ ..+.....+..-..-.-..... ....
T Consensus 78 ~----~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~ 153 (206)
T PF14988_consen 78 R----LKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKS 153 (206)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 001679 354 FKMKYSEEQAKRKELYNQIQQT 375 (1032)
Q Consensus 354 l~~~~~~e~~~Rr~l~n~~~el 375 (1032)
+.+-...-..+...|+..|.-+
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l 175 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQL 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 453
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=43.17 E-value=8.2e+02 Score=31.21 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001679 829 DIENKLKEQERESESHSISLQHKVKELESKLKEQ 862 (1032)
Q Consensus 829 ~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~ 862 (1032)
.+.-+|+.++-+.......+..++.+|+..+..+
T Consensus 317 aLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq 350 (739)
T PF07111_consen 317 ALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQ 350 (739)
T ss_pred HHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333444444444455555444433
No 454
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=43.17 E-value=2.9e+02 Score=26.57 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001679 305 AVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVIGVQ---ALVAQCEDFKMKYSEEQAKRKELYNQIQ 373 (1032)
Q Consensus 305 ~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~e~~~Rr~l~n~~~ 373 (1032)
+...+++++..++.+...+...-.++...+.++......-. ....+.+.++..|..+....+-+-|-++
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333222211 1334555566666666666666666555
No 455
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=43.13 E-value=11 Score=46.34 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=24.4
Q ss_pred cchHHHHHHhcCcc--eEEEeecccCCCcceEe
Q 001679 441 DASPLVISVLDGYN--VCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 441 ~v~plV~~~l~G~N--~~IfaYGqTGSGKTyTm 471 (1032)
+|+..++..+.|.. ..++.+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46777777666653 46888999999999997
No 456
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=43.12 E-value=5.1e+02 Score=28.86 Aligned_cols=9 Identities=56% Similarity=0.744 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 001679 872 LRQKIKELE 880 (1032)
Q Consensus 872 l~~k~~~Le 880 (1032)
|++++++.+
T Consensus 283 LQq~Lketr 291 (330)
T KOG2991|consen 283 LQQKLKETR 291 (330)
T ss_pred HHHHHHHHH
Confidence 444444333
No 457
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.05 E-value=4.5e+02 Score=29.75 Aligned_cols=98 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001679 267 LDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVIGVQA 346 (1032)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~ 346 (1032)
|+++---++.|+..|+.....|.+-.. .|.+|+.||..|+++--+-+-..-+++-.+.|..+.+..|+.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRet-----------EI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQ 131 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRET-----------EIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQ 131 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHhhhc
Q 001679 347 LVAQCE--------DFKMKYSEEQAKRKELYNQIQQT 375 (1032)
Q Consensus 347 ~~~~~~--------~l~~~~~~e~~~Rr~l~n~~~el 375 (1032)
.++-.+ .++.=|..-....|||.+-||-+
T Consensus 132 vieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 132 VIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSM 168 (305)
T ss_pred HHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHH
No 458
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=43.03 E-value=12 Score=44.88 Aligned_cols=26 Identities=42% Similarity=0.609 Sum_probs=20.3
Q ss_pred HHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 444 PLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 444 plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
..+..+++|.| |++.++||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 44566788998 567789999999874
No 459
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=42.93 E-value=8.5 Score=42.61 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.3
Q ss_pred eEEEeecccCCCcceEe
Q 001679 455 VCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm 471 (1032)
.-++-||++|||||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 44777999999999876
No 460
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=42.91 E-value=16 Score=46.17 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=29.4
Q ss_pred ceEECCCCCchhhhhc-------chHHHHHHhcCcceEEEeecccCCCcceE
Q 001679 426 DRVFTPNDGQVDVFAD-------ASPLVISVLDGYNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 426 D~VF~~~~tQ~~vf~~-------v~plV~~~l~G~N~~IfaYGqTGSGKTyT 470 (1032)
++-+++++-|..+|.. -..+|+.+| |.|+.|-+ +||+|||+.
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 3344555555555532 146888999 99997766 999999985
No 461
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.80 E-value=4.4e+02 Score=28.01 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Q 001679 789 ERLKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERESESHSISLQHKVKELESKLKEQERQHVE 868 (1032)
Q Consensus 789 ~~~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~~~~e 868 (1032)
.....+...+..++.++..++..+.+-..........+-.. +.....-.....|+..+++|...+.......
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D-- 133 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES------EEREELLEELEELKKELKELKKELEKYSEND-- 133 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001679 869 SLMLRQKIKELEDKLKEQEQQFQCRLSRDFA 899 (1032)
Q Consensus 869 ~~~l~~k~~~Le~~l~~~~~~~q~~~~~~~~ 899 (1032)
-+.+..+.+.+....+.+.+++++.+.
T Consensus 134 ----p~~i~~~~~~~~~~~~~anrwTDNI~~ 160 (188)
T PF03962_consen 134 ----PEKIEKLKEEIKIAKEAANRWTDNIFS 160 (188)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhHHH
No 462
>PTZ00424 helicase 45; Provisional
Probab=42.61 E-value=15 Score=42.92 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=20.8
Q ss_pred hHHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 443 SPLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 443 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
...+..+++|.|+. ..++||||||.+.
T Consensus 56 ~~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 56 QRGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 34566788999865 5689999999765
No 463
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.59 E-value=2.6e+02 Score=25.22 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=9.9
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q 001679 747 NRAKYKDQTYKNQQEKVKEL 766 (1032)
Q Consensus 747 ~~~~~~~~~~~~~~e~~~~l 766 (1032)
..+..++..+..+.+.-..|
T Consensus 5 ~~l~EKDe~Ia~L~eEGekL 24 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKL 24 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 34445555555555544444
No 464
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=42.57 E-value=8.7 Score=43.22 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.1
Q ss_pred cCcceEEEeecccCCCcceEe
Q 001679 451 DGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 451 ~G~N~~IfaYGqTGSGKTyTm 471 (1032)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999765
No 465
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=42.52 E-value=8.1e+02 Score=30.99 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=7.1
Q ss_pred eCCCCcChHhHHHH
Q 001679 677 ISPSEQDLSETLSS 690 (1032)
Q Consensus 677 ISP~~~~~~ETl~T 690 (1032)
-+|.+....+++.+
T Consensus 187 q~p~a~~~sevl~s 200 (811)
T KOG4364|consen 187 QMPAALQRSEVLKS 200 (811)
T ss_pred cCcccccHHHHHhh
Confidence 34445555555555
No 466
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=42.49 E-value=29 Score=43.43 Aligned_cols=36 Identities=31% Similarity=0.576 Sum_probs=27.2
Q ss_pred hhhcchHHHHHHh--cCcceEEEeecccCCCcceEeec
Q 001679 438 VFADASPLVISVL--DGYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 438 vf~~v~plV~~~l--~G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
-|.++...+..++ +|--+|+..-|..|||||.|+.+
T Consensus 404 E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 404 EFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred HHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHH
Confidence 4555555666665 37777999999999999999754
No 467
>PRK10536 hypothetical protein; Provisional
Probab=42.43 E-value=15 Score=41.03 Aligned_cols=41 Identities=24% Similarity=0.422 Sum_probs=25.9
Q ss_pred eeecceEECCCCCchhhhhcchHHHHHHhcCcceEEEeecccCCCcceEe
Q 001679 422 TFKFDRVFTPNDGQVDVFADASPLVISVLDGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 422 ~F~FD~VF~~~~tQ~~vf~~v~plV~~~l~G~N~~IfaYGqTGSGKTyTm 471 (1032)
.|.|..|-+-+..|..... .+.+ +..||..|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHH
Confidence 3555555555555544332 2333 348999999999999875
No 468
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.34 E-value=1.4e+02 Score=35.89 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEE--EecC
Q 001679 344 VQALVAQCEDFKMKYSEEQAKRKELYNQIQQTRGNIRVFC--RCRP 387 (1032)
Q Consensus 344 ~~~~~~~~~~l~~~~~~e~~~Rr~l~n~~~elkgnIrV~~--RvRP 387 (1032)
++.+...+..+..++.+-......|.+.+....++.+|.| ++.|
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~I~v~~~vyp 422 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERSYKEARIKVRKRVYP 422 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceEEEECCEEEC
Confidence 3344455555666666666677778888887743334444 4455
No 469
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=42.33 E-value=26 Score=41.00 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=26.2
Q ss_pred cc-eEECCCCCchhhhhcchHHHHHHhcC---cceEEEeecccCCCcceE
Q 001679 425 FD-RVFTPNDGQVDVFADASPLVISVLDG---YNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 425 FD-~VF~~~~tQ~~vf~~v~plV~~~l~G---~N~~IfaYGqTGSGKTyT 470 (1032)
|| .||+ +.+....+...+.+...| .+-.+.-.|++|||||..
T Consensus 49 F~~~~~G----~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 49 FDHDFFG----MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred cchhccC----cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 45 6777 444444433444444443 456788999999999843
No 470
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=42.17 E-value=10 Score=37.35 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=13.1
Q ss_pred EEeecccCCCcceEe
Q 001679 457 IFAYGQTGTGKTFTM 471 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm 471 (1032)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999765
No 471
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=42.05 E-value=13 Score=47.08 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=22.0
Q ss_pred cchHHHHHHhc-----CcceEEEeecccCCCcceEeec
Q 001679 441 DASPLVISVLD-----GYNVCIFAYGQTGTGKTFTMEG 473 (1032)
Q Consensus 441 ~v~plV~~~l~-----G~N~~IfaYGqTGSGKTyTm~G 473 (1032)
.+..++.++.. |.+..|+.. +||||||+||..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 35666666665 445555443 899999999965
No 472
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.98 E-value=3.2e+02 Score=30.55 Aligned_cols=16 Identities=44% Similarity=0.694 Sum_probs=13.1
Q ss_pred cceEEEeecccCCCcc
Q 001679 453 YNVCIFAYGQTGTGKT 468 (1032)
Q Consensus 453 ~N~~IfaYGqTGSGKT 468 (1032)
.---++-||+.|+|||
T Consensus 180 QPKGvlLygppgtGkt 195 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKT 195 (404)
T ss_pred CCcceEEecCCCCchh
Confidence 3445889999999997
No 473
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=41.67 E-value=3.6e+02 Score=26.70 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001679 305 AVSDLQEKVKMMKKEHSQLS 324 (1032)
Q Consensus 305 ~~~~l~~~~~~~~~e~~~l~ 324 (1032)
.+.+|.++++.+.-.+..|.
T Consensus 71 ~~~eL~er~E~Le~ri~tLe 90 (119)
T COG1382 71 AVDELEERKETLELRIKTLE 90 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 474
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.67 E-value=11 Score=43.00 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=13.8
Q ss_pred ceEEEeecccCCCcceE
Q 001679 454 NVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 454 N~~IfaYGqTGSGKTyT 470 (1032)
.+-|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 45678899999999863
No 475
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=41.58 E-value=1.1e+03 Score=32.32 Aligned_cols=167 Identities=23% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHHHHHH
Q 001679 711 TSELQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQVSLKSNLHDQSDKQASQLLER 790 (1032)
Q Consensus 711 ~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~~~~~~l~~~~e~~~~~l~~~ 790 (1032)
...++.++.....++.........+..-.+....++..+......+.+....+++++..+ .+...+..+
T Consensus 208 l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~-----------~~~~~l~~e 276 (1294)
T KOG0962|consen 208 LEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLL-----------KQVKLLDSE 276 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhH
Q 001679 791 LKGREELCSTLQIKVKELENRLRDRQQSESAIFQQKVKDIENKLKEQERE---SESHSISLQHKVKELESKLKEQERQHV 867 (1032)
Q Consensus 791 ~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~---~e~~~~~l~~k~~eLe~k~~~~~~~~~ 867 (1032)
.....+..+.+...+..+...-...+..+...+.+.+.+...+..+.+.+ .+.+...|...-.++.......+...+
T Consensus 277 ~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~ 356 (1294)
T KOG0962|consen 277 HKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAE 356 (1294)
T ss_pred HHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001679 868 ESLMLRQKIKELEDKLKEQEQ 888 (1032)
Q Consensus 868 e~~~l~~k~~~Le~~l~~~~~ 888 (1032)
-...+......+-+.+...-+
T Consensus 357 ~~~~l~~~~~~~~~~~~~~~~ 377 (1294)
T KOG0962|consen 357 FHQELKRQRDSLIQELAHQYQ 377 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 476
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=41.35 E-value=3.3e+02 Score=29.06 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001679 302 WAAAVSDLQEKVKMMKKEHSQLS 324 (1032)
Q Consensus 302 ~~~~~~~l~~~~~~~~~e~~~l~ 324 (1032)
....+..|+.++..++.+...+.
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 477
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=41.34 E-value=4.1e+02 Score=27.25 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 249 AWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSR 325 (1032)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~ 325 (1032)
+|....+...++++..++...+....+. .++.....|..+...|+..-.-.+..+..++.+|..+..++.-|..
T Consensus 32 als~f~AkEeeIErkKmeVrekVq~~Lg---rveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~ 105 (159)
T PF04949_consen 32 ALSAFRAKEEEIERKKMEVREKVQAQLG---RVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQ 105 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444455556666666666655544432 3333444444555555555556666667777777766666666543
No 478
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=40.96 E-value=60 Score=27.57 Aligned_cols=36 Identities=11% Similarity=0.400 Sum_probs=19.9
Q ss_pred eEEEecCCCceEEEEEEEeecccCCCCCcceEEEEEE
Q 001679 94 CYRFNDIPPGHYYVDLHFAEIINTNGPKGMRVFNVFV 130 (1032)
Q Consensus 94 sY~fp~v~~G~Y~VrLhFaEi~~~~~~~G~RvFdV~I 130 (1032)
...|+.++||+|.+.+.=....... ....+.+.|.|
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~-~~~~~~l~i~I 65 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKW-SSDEKSLTITI 65 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B--SS-EEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCc-CcccEEEEEEE
Confidence 5666679999999998755543332 11226666654
No 479
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=40.74 E-value=8.2e+02 Score=30.51 Aligned_cols=25 Identities=16% Similarity=0.431 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 305 AVSDLQEKVKMMKKEHSQLSREAHE 329 (1032)
Q Consensus 305 ~~~~l~~~~~~~~~e~~~l~~e~~~ 329 (1032)
.+..++..+..+..++..+..++.+
T Consensus 102 ~i~~~~~~l~~~e~~i~~i~~~l~~ 126 (560)
T PF06160_consen 102 AIKEIEEQLDEIEEDIKEILDELDE 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444443333
No 480
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=40.59 E-value=3.9e+02 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCEEEEEEe
Q 001679 357 KYSEEQAKRKELYNQIQQTRGNIRVFCRC 385 (1032)
Q Consensus 357 ~~~~e~~~Rr~l~n~~~elkgnIrV~~Rv 385 (1032)
.|.+...+||.+..+|-...+...|.-|.
T Consensus 87 Ayhk~ndeRr~ylaEi~~~s~~~~~~k~q 115 (129)
T PF15372_consen 87 AYHKANDERRQYLAEISQTSALHQVSKRQ 115 (129)
T ss_pred HHHHHhHHHHHHHHHHHhhhhhHhhhccc
Confidence 35666677888888887777666665443
No 481
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.50 E-value=5.1e+02 Score=28.04 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=14.5
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001679 291 ITSRYECDKKYWAAAVSDLQEKVKMMKK 318 (1032)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (1032)
...+.++......+.+..|+.+|...+.
T Consensus 97 ~k~Eiersi~~a~~kie~lkkql~eaKi 124 (222)
T KOG3215|consen 97 KKLEIERSIQKARNKIELLKKQLHEAKI 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455566666666655543
No 482
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.46 E-value=6.4e+02 Score=32.09 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001679 221 RIKATEKYEKKIEELNKQFQLKTNECHEAWMSLTAANEQLEKV 263 (1032)
Q Consensus 221 ~~k~~~~~~~~ie~l~~e~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (1032)
.++...++..++.+....++.-..++.+.|+.+..-.++....
T Consensus 231 L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f 273 (660)
T KOG4302|consen 231 LDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRF 273 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 4455566666677777777777788899999987666655444
No 483
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=40.45 E-value=14 Score=46.73 Aligned_cols=36 Identities=36% Similarity=0.393 Sum_probs=27.4
Q ss_pred hhhhhcchHHHHHHh-cCcceEEEeecccCCCcceEe
Q 001679 436 VDVFADASPLVISVL-DGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 436 ~~vf~~v~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 471 (1032)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 346766544444443 689999999999999999986
No 484
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.44 E-value=10 Score=44.57 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.1
Q ss_pred eEEEeecccCCCcceEee
Q 001679 455 VCIFAYGQTGTGKTFTME 472 (1032)
Q Consensus 455 ~~IfaYGqTGSGKTyTm~ 472 (1032)
..|.-+|+||+|||+|+.
T Consensus 138 ~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456679999999999974
No 485
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.37 E-value=3.9e+02 Score=26.65 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001679 302 WAAAVSDLQEKVKMMKKEHSQLSREAHECADS 333 (1032)
Q Consensus 302 ~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~ 333 (1032)
+..++.-|+.+++.+...+..+..++....+.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 123 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASR 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444443
No 486
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=40.27 E-value=33 Score=44.12 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 298 DKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIP------------------ELNKMVIGVQALVAQCEDFKMKYS 359 (1032)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~ 359 (1032)
++....+.+......+...........+++.++.+.+. ..++.....+.+...+....-.+.
T Consensus 277 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~v~a~s~~eL~~~~~~v~~~l~~~g~~~~ 356 (785)
T TIGR00929 277 SKEAALSKLGRKRKRLISKGDRAKSQIAELDEALDELTSGDFVMGEHHLSLVVYAEDLEKLDAALREARSLLNACGIVAV 356 (785)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcCCcccccceEEEEEEcCCHHHHHHHHHHHHHHHHhCCcEEE
Q ss_pred HHHHHHHHHHHHhhhcCCCEEEEEEecCCCcccccCCCceEEEecCCCC----CceeEEeCCcCceeeecceEECCCCCc
Q 001679 360 EEQAKRKELYNQIQQTRGNIRVFCRCRPLNKVEISAGCATVVDFDAAKD----GELGVLTGSSTRKTFKFDRVFTPNDGQ 435 (1032)
Q Consensus 360 ~e~~~Rr~l~n~~~elkgnIrV~~RvRP~~~~E~~~~~~~vv~~~~~~~----~~~~~~~~~~~~~~F~FD~VF~~~~tQ 435 (1032)
.+...-...+... +.|+..-..|.+|++........+-.-....... |.............|-||-
T Consensus 357 ~~~~~q~~~f~s~--lP~~~~~~~r~~~~~s~~~a~~~p~~~~~~g~~~g~~~G~~~~~~~t~~g~p~~~d~-------- 426 (785)
T TIGR00929 357 IETLGLEAAFWSQ--LPGNFSWNPRKSLITSRNFASLIPFHNFNLGKLRGNPWGPALTLLKTQSGTPFYFNF-------- 426 (785)
T ss_pred EcccccHHHHHHh--CCCccccccCcccccHHHHHHHhhhcCCCCCCCCCCCCCcceEEEEcCCCCceEEEe--------
Q ss_pred hhhhhcchHHHHHHhcCc---ceEEEeecccCCCcceEe
Q 001679 436 VDVFADASPLVISVLDGY---NVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 436 ~~vf~~v~plV~~~l~G~---N~~IfaYGqTGSGKTyTm 471 (1032)
..+- |.-++..|.||||||++|
T Consensus 427 --------------~~~~~~~~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 427 --------------HVRDAKVLGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred --------------ccCCCCCCceEEEECCCCCCHHHHH
No 487
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=40.25 E-value=18 Score=45.84 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=0.0
Q ss_pred hhhcchHHHHHHh-cCcceEEEeecccCCCcceE
Q 001679 438 VFADASPLVISVL-DGYNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 438 vf~~v~plV~~~l-~G~N~~IfaYGqTGSGKTyT 470 (1032)
||..+.......+ .|.|-||+.-|.+|||||.|
T Consensus 69 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes 102 (671)
T cd01381 69 IFAISDNAYTNMQREKKNQCIIISGESGAGKTES 102 (671)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehH
No 488
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.85 E-value=8.4e+02 Score=30.40 Aligned_cols=214 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred ChHhHHHHHHHHHHhccccccccccccChHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHH----HH
Q 001679 683 DLSETLSSLNFATQVRGVELGPARKQIDTSELQKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTY----KN 758 (1032)
Q Consensus 683 ~~~ETl~TL~fA~r~~~i~~~p~~~~~~~~el~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~----~~ 758 (1032)
+.++.+...+|..--+.+...-..-.....++..+...+..+..........+..+.+.+..++..+......+ ..
T Consensus 86 ~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~ 165 (560)
T PF06160_consen 86 EAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEE 165 (560)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHH
Q ss_pred HHHHHHHHHHhHhhhhhhh-----hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 001679 759 QQEKVKELEGQVSLKSNLH-----DQSDKQASQLLERLKGREELCSTLQIKVKELENRLRDRQQSESAIF---------- 823 (1032)
Q Consensus 759 ~~e~~~~le~~~~~~~~l~-----~~~e~~~~~l~~~~~~~~e~~~~l~~~l~ele~~l~~~~~~~~~~~---------- 823 (1032)
+++.+..++.....-..+. .+..+....+...+....+.+..+=..+.++...+-.+++.+..-+
T Consensus 166 Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l 245 (560)
T PF06160_consen 166 LEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYL 245 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCC
Q ss_pred -----HHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 824 -----QQKVKDIENKLKEQE--------RESESHSISLQHKVKELESKLKEQERQHVESLMLRQKIKELEDKLKEQEQQF 890 (1032)
Q Consensus 824 -----~~k~~~~e~~l~e~~--------~~~e~~~~~l~~k~~eLe~k~~~~~~~~~e~~~l~~k~~~Le~~l~~~~~~~ 890 (1032)
...++.+..++.+.. ...+.....+.+.|..|=..+..+..+..........+.+.=..+......+
T Consensus 246 ~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l 325 (560)
T PF06160_consen 246 EHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKEL 325 (560)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhh
Q 001679 891 QCRLSR 896 (1032)
Q Consensus 891 q~~~~~ 896 (1032)
...+.+
T Consensus 326 ~~e~~~ 331 (560)
T PF06160_consen 326 KEELER 331 (560)
T ss_pred HHHHHH
No 489
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=39.75 E-value=9.4 Score=44.49 Aligned_cols=15 Identities=47% Similarity=1.023 Sum_probs=0.0
Q ss_pred EEeecccCCCcceEe
Q 001679 457 IFAYGQTGTGKTFTM 471 (1032)
Q Consensus 457 IfaYGqTGSGKTyTm 471 (1032)
|+-||.+||||||++
T Consensus 33 ~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLV 47 (438)
T ss_pred EEEeccCCCchhHHH
No 490
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=39.72 E-value=6.4e+02 Score=28.99 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhhhhhhhHHHHHH------HHHHHHHHHHHHHH
Q 001679 245 ECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITSRYECDKKYWAA------AVSDLQEKVKMMKK 318 (1032)
Q Consensus 245 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ 318 (1032)
+..++...+.....+++.....++.........+..+......++.....|++.+.-+.. .+++.+.++...+.
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~ 166 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEV 166 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 319 EHSQLSREAHECADSIPELNKMVIGVQALVAQCEDFKMKY 358 (1032)
Q Consensus 319 e~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (1032)
++.++..+.......+.++......+..+...++..+..+
T Consensus 167 ~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 167 SLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHL 206 (346)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
No 491
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=39.72 E-value=17 Score=46.17 Aligned_cols=33 Identities=36% Similarity=0.552 Sum_probs=0.0
Q ss_pred hhhcchHHHHHHh-cCcceEEEeecccCCCcceE
Q 001679 438 VFADASPLVISVL-DGYNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 438 vf~~v~plV~~~l-~G~N~~IfaYGqTGSGKTyT 470 (1032)
||..+......++ .|.|-||+.-|.+|||||.|
T Consensus 77 iy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet 110 (692)
T cd01385 77 IFAIADVAYYNMLRKKVNQCIVISGESGSGKTES 110 (692)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCCCchHH
No 492
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=39.70 E-value=5.4e+02 Score=28.12 Aligned_cols=142 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHHHHHhh
Q 001679 221 RIKATEKYEKKIEELNKQFQLKTN-------ECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENLINITS 293 (1032)
Q Consensus 221 ~~k~~~~~~~~ie~l~~e~~~~~~-------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 293 (1032)
+..++..|-+.+..|-..+..+.. -....|..+...-+.+......+-..+.... -..+..-..+.+....
T Consensus 31 Ra~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v--~~~l~~~~~~~~~~rK 108 (251)
T cd07653 31 RAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNV--CKELKTLISELRQERK 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001679 294 RYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSI-----------PELNKMVIGVQALVAQCEDFKMKYSEEQ 362 (1032)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~e~ 362 (1032)
++...-..+...+...-.++...+..+..+..++..+...+ .++.+....+......+...+..|....
T Consensus 109 ~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l 188 (251)
T cd07653 109 KHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQL 188 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 001679 363 AK 364 (1032)
Q Consensus 363 ~~ 364 (1032)
..
T Consensus 189 ~~ 190 (251)
T cd07653 189 QK 190 (251)
T ss_pred HH
No 493
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=39.67 E-value=17 Score=40.23 Aligned_cols=51 Identities=25% Similarity=0.482 Sum_probs=0.0
Q ss_pred HHHHhcCcceE-EEeecccCCCcceEeeccCCCCchhHhHHHHHHHHHHhcCCCceeeeeeeEEEEEcCceeec
Q 001679 446 VISVLDGYNVC-IFAYGQTGTGKTFTMEGTEQSRGVNYRTLEQLFEIAKERSETFTYNISVSVLEVYNEQIRDL 518 (1032)
Q Consensus 446 V~~~l~G~N~~-IfaYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~~~~~~~~v~vS~~EIYnE~i~DL 518 (1032)
...++.|..+- ++-||..|||||.++-+ ++....... +..+||..+.+.||
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlVka--------------ll~~y~~~G--------LRlIev~k~~L~~l 94 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLVKA--------------LLNEYADQG--------LRLIEVSKEDLGDL 94 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHHHH--------------HHHHHhhcC--------ceEEEECHHHhccH
No 494
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=39.41 E-value=19 Score=45.66 Aligned_cols=33 Identities=36% Similarity=0.456 Sum_probs=0.0
Q ss_pred hhhcchHHHHHHh-cCcceEEEeecccCCCcceE
Q 001679 438 VFADASPLVISVL-DGYNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 438 vf~~v~plV~~~l-~G~N~~IfaYGqTGSGKTyT 470 (1032)
||..+.......+ .|.|-||+.-|.+|||||.|
T Consensus 75 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~ 108 (677)
T cd01383 75 VYAIADTAYNEMMRDEVNQSIIISGESGAGKTET 108 (677)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEecCCCCCcchH
No 495
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.40 E-value=1e+03 Score=31.38 Aligned_cols=191 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 001679 715 QKMKVMLEKARQDSRSKDESLRKLEENLQNLENRAKYKDQTYKNQQEKVKELEGQVSLKSNLHDQSDKQASQLLERLKGR 794 (1032)
Q Consensus 715 ~~lk~~l~~~~~e~~~~~~~~~~le~~l~~le~~~~~~~~~~~~~~e~~~~le~~~~~~~~l~~~~e~~~~~l~~~~~~~ 794 (1032)
......+..+..........+..|.+....+......... +......+..+...+..........+.....+...+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001679 795 EELCSTLQIKVKELENRLRDRQQSESAIFQ---QKVKDIENKLKEQERESESHSISLQHKVKELESKLKEQERQHVESLM 871 (1032)
Q Consensus 795 ~e~~~~l~~~l~ele~~l~~~~~~~~~~~~---~k~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~~~~e~~~ 871 (1032)
..........+++..+.+..+......... +....+...+.............+.+-...+................
T Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 428 (908)
T COG0419 349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccccccc
Q 001679 872 LRQKIKELEDKLKEQEQQFQCRLSRDFADLIKYTPNEVKTS 912 (1032)
Q Consensus 872 l~~k~~~Le~~l~~~~~~~q~~~~~~~~~~~~~~~~~~k~~ 912 (1032)
+...+..++..+...... ..+..++.. ....+++|
T Consensus 429 ~~~~~~~~~~~~~~~~~~-----~~~~~~l~~-~~~~CPvC 463 (908)
T COG0419 429 LEEEIKKLEEQINQLESK-----ELMIAELAG-AGEKCPVC 463 (908)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHh-CCCCCCCC
No 496
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.37 E-value=8.3e+02 Score=30.21 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001679 732 DESLRKLEENLQNLENR-AKYKDQTYKNQQEKVKELEGQVSLKSNLHDQSDKQASQLLERLKGREELCSTLQIKVKELEN 810 (1032)
Q Consensus 732 ~~~~~~le~~l~~le~~-~~~~~~~~~~~~e~~~~le~~~~~~~~l~~~~e~~~~~l~~~~~~~~e~~~~l~~~l~ele~ 810 (1032)
.+....|-+-.+-++.. +.+.+....+++.-++.+..+.+.+..-....+++++.+.+.....++...+...+.+.+.+
T Consensus 558 ~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~ 637 (741)
T KOG4460|consen 558 EECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMN 637 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHHHHHHH
Q 001679 811 RLRDRQQSESAIFQQKVKDIENKLKEQERESESHSISLQHKVKELESKLKEQERQHVE---------SLMLRQKIKELED 881 (1032)
Q Consensus 811 ~l~~~~~~~~~~~~~k~~~~e~~l~e~~~~~e~~~~~l~~k~~eLe~k~~~~~~~~~e---------~~~l~~k~~~Le~ 881 (1032)
+++. +.+.-.....-+-..|...++..+-.-.+...|...++.+..+.++++.--+. ...-.-+++.++.
T Consensus 638 ~~~~-L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqs 716 (741)
T KOG4460|consen 638 RMKK-LLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQS 716 (741)
T ss_pred HHHH-HHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhh
Q 001679 882 KLKEQEQQFQCRLSR 896 (1032)
Q Consensus 882 ~l~~~~~~~q~~~~~ 896 (1032)
-|.++..++....+.
T Consensus 717 iL~~L~~~i~~~~k~ 731 (741)
T KOG4460|consen 717 ILKELGEHIREMVKQ 731 (741)
T ss_pred HHHHHHHHHHHHHHH
No 497
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=39.33 E-value=17 Score=46.08 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=0.0
Q ss_pred hhhcchHHHHHHh-cCcceEEEeecccCCCcceEe
Q 001679 438 VFADASPLVISVL-DGYNVCIFAYGQTGTGKTFTM 471 (1032)
Q Consensus 438 vf~~v~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 471 (1032)
||..+.......+ .|.|-||+.-|.+|||||.|.
T Consensus 70 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 70 LFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
No 498
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=39.29 E-value=9.8e+02 Score=31.00 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhchhHHHHHHHHHH
Q 001679 211 EVPSAQKKLMRIKATEKYEKKIEELNKQFQ--LKTNECHEAWMSLTAANEQLEKVRMELDNKAFQTLTLDQTVEKQAENL 288 (1032)
Q Consensus 211 ~~~~~~~k~~~~k~~~~~~~~ie~l~~e~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 288 (1032)
+++..++|-+.....++.+++..+|..-.+ .+-.+..-.-+..++...++...+-+++.+..+........+....++
T Consensus 953 eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 953 EISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 001679 289 INITSRYECDKKYWAAAVSDLQEKVKMMKKEHSQLSREAHECADSIPELNKMVIGVQALVAQCEDF--KMKYSEEQAKRK 366 (1032)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~e~~~Rr 366 (1032)
..... +.+..++=+.-....-..+++.+.......+.+.......-..-+...... ..++..-..+|-
T Consensus 1033 iQekE----------~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~edrakqkei~k~L~ehelenLrnEie 1102 (1424)
T KOG4572|consen 1033 IQEKE----------GELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIE 1102 (1424)
T ss_pred Hhccc----------chHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcCCCEEE
Q 001679 367 ELYNQIQQTRGNIRV 381 (1032)
Q Consensus 367 ~l~n~~~elkgnIrV 381 (1032)
+|...|++-.|+-+|
T Consensus 1103 klndkIkdnne~~QV 1117 (1424)
T KOG4572|consen 1103 KLNDKIKDNNEGDQV 1117 (1424)
T ss_pred HHHHHhhcCCCcchH
No 499
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=39.28 E-value=14 Score=42.45 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred ECCCCCchhhhhcchHHHHHHhcCcce--EEEeecccCCCcce
Q 001679 429 FTPNDGQVDVFADASPLVISVLDGYNV--CIFAYGQTGTGKTF 469 (1032)
Q Consensus 429 F~~~~tQ~~vf~~v~plV~~~l~G~N~--~IfaYGqTGSGKTy 469 (1032)
|..-..|.++-..+..++......... .++-||++|+|||+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~ 66 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTT 66 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHH
No 500
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=39.12 E-value=18 Score=45.87 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=0.0
Q ss_pred hhhcchHHHHHHh-cCcceEEEeecccCCCcceE
Q 001679 438 VFADASPLVISVL-DGYNVCIFAYGQTGTGKTFT 470 (1032)
Q Consensus 438 vf~~v~plV~~~l-~G~N~~IfaYGqTGSGKTyT 470 (1032)
||..+.......+ .|.|-||+.-|.+|||||.|
T Consensus 71 ifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~ 104 (674)
T cd01384 71 VFAIADAAYRAMINEGKSQSILVSGESGAGKTET 104 (674)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCCCCchhH
Done!