Query 001680
Match_columns 1032
No_of_seqs 368 out of 2339
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 2E-103 4E-108 854.4 36.4 575 288-1031 174-790 (791)
2 KOG4439 RNA polymerase II tran 100.0 1.4E-88 3E-93 766.5 40.8 544 290-1032 317-901 (901)
3 KOG0385 Chromatin remodeling c 100.0 1.1E-87 2.5E-92 765.6 40.8 459 291-1012 159-623 (971)
4 KOG0387 Transcription-coupled 100.0 8.9E-86 1.9E-90 754.7 41.3 478 287-1032 194-699 (923)
5 KOG0392 SNF2 family DNA-depend 100.0 8.6E-85 1.9E-89 768.7 38.0 525 275-1031 950-1495(1549)
6 KOG0389 SNF2 family DNA-depend 100.0 1.1E-83 2.3E-88 736.3 34.0 488 297-1013 397-913 (941)
7 PLN03142 Probable chromatin-re 100.0 1E-81 2.3E-86 778.1 46.9 474 291-1031 162-641 (1033)
8 KOG1001 Helicase-like transcri 100.0 1E-82 2.2E-87 759.7 32.5 567 271-1011 106-673 (674)
9 KOG0391 SNF2 family DNA-depend 100.0 8.8E-82 1.9E-86 732.7 35.4 579 288-1032 605-1429(1958)
10 KOG0384 Chromodomain-helicase 100.0 1.6E-77 3.5E-82 711.8 33.9 480 291-1030 362-856 (1373)
11 KOG0388 SNF2 family DNA-depend 100.0 2.5E-75 5.5E-80 654.6 31.7 545 294-1012 562-1178(1185)
12 KOG0390 DNA repair protein, SN 100.0 1.6E-70 3.4E-75 649.1 39.8 493 293-1031 232-748 (776)
13 KOG0386 Chromatin remodeling c 100.0 3E-71 6.5E-76 647.3 20.3 462 289-1011 384-861 (1157)
14 KOG1015 Transcription regulato 100.0 3.6E-67 7.8E-72 602.5 31.2 576 297-1031 666-1317(1567)
15 COG0553 HepA Superfamily II DN 100.0 1.2E-62 2.6E-67 629.5 36.4 498 294-1031 333-864 (866)
16 KOG1000 Chromatin remodeling p 100.0 1.6E-55 3.4E-60 481.7 31.5 423 291-1009 191-624 (689)
17 KOG1016 Predicted DNA helicase 100.0 2.4E-56 5.3E-61 504.4 25.9 570 297-1031 252-889 (1387)
18 PRK04914 ATP-dependent helicas 100.0 1.2E-54 2.6E-59 536.5 35.8 420 297-1011 150-628 (956)
19 KOG0298 DEAD box-containing he 100.0 1.1E-49 2.3E-54 476.8 15.7 374 289-706 236-689 (1394)
20 PF00176 SNF2_N: SNF2 family N 100.0 7.1E-44 1.5E-48 399.2 17.1 291 303-708 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 3.8E-36 8.2E-41 360.8 36.6 355 297-996 253-615 (732)
22 KOG0383 Predicted helicase [Ge 100.0 1.9E-39 4.2E-44 382.1 7.6 398 298-942 294-696 (696)
23 PRK13766 Hef nuclease; Provisi 100.0 2.4E-32 5.1E-37 344.5 34.1 463 297-1005 13-496 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 7.1E-25 1.5E-29 245.0 36.4 460 298-1005 14-498 (542)
25 PHA02558 uvsW UvsW helicase; P 99.9 3.4E-25 7.3E-30 264.9 34.5 110 879-989 346-456 (501)
26 COG1061 SSL2 DNA or RNA helica 99.9 1.2E-24 2.5E-29 255.5 32.8 367 297-999 34-405 (442)
27 KOG1123 RNA polymerase II tran 99.9 1.4E-21 3E-26 215.6 20.9 357 285-993 291-658 (776)
28 PTZ00110 helicase; Provisional 99.9 9.9E-21 2.2E-25 228.2 30.5 106 879-988 379-484 (545)
29 KOG0354 DEAD-box like helicase 99.9 2.1E-19 4.5E-24 212.6 34.5 147 829-1009 392-549 (746)
30 PRK11776 ATP-dependent RNA hel 99.9 1.5E-19 3.4E-24 215.0 30.1 106 879-988 244-349 (460)
31 PRK11192 ATP-dependent RNA hel 99.9 2.1E-19 4.6E-24 212.4 29.5 101 879-981 247-347 (434)
32 TIGR00614 recQ_fam ATP-depende 99.8 2.1E-19 4.5E-24 213.9 27.7 102 879-982 228-329 (470)
33 PRK10590 ATP-dependent RNA hel 99.8 2.6E-19 5.7E-24 212.4 26.4 106 879-988 247-352 (456)
34 PRK04837 ATP-dependent RNA hel 99.8 4.8E-19 1E-23 208.5 28.2 105 879-987 257-361 (423)
35 PRK01297 ATP-dependent RNA hel 99.8 6E-19 1.3E-23 210.6 29.4 106 879-988 337-442 (475)
36 PLN00206 DEAD-box ATP-dependen 99.8 5.1E-19 1.1E-23 212.7 28.8 106 879-988 369-475 (518)
37 PRK11634 ATP-dependent RNA hel 99.8 1.1E-18 2.5E-23 212.4 29.1 98 879-978 247-344 (629)
38 PRK04537 ATP-dependent RNA hel 99.8 9.4E-19 2E-23 211.8 28.2 105 879-987 259-363 (572)
39 PRK11057 ATP-dependent DNA hel 99.8 1.5E-18 3.3E-23 212.1 26.3 99 879-979 238-336 (607)
40 TIGR01389 recQ ATP-dependent D 99.8 1.5E-18 3.2E-23 212.6 26.2 100 879-980 226-325 (591)
41 PTZ00424 helicase 45; Provisio 99.8 3.8E-18 8.3E-23 199.7 27.3 107 879-989 269-375 (401)
42 TIGR00643 recG ATP-dependent D 99.8 3.8E-18 8.2E-23 209.5 27.5 79 900-980 481-560 (630)
43 PRK11448 hsdR type I restricti 99.8 5.8E-18 1.3E-22 215.6 29.1 105 878-985 699-815 (1123)
44 KOG0331 ATP-dependent RNA heli 99.8 1.1E-17 2.5E-22 192.7 24.1 118 831-978 323-440 (519)
45 TIGR00580 mfd transcription-re 99.8 2E-17 4.4E-22 207.2 26.3 105 879-987 662-769 (926)
46 PRK10917 ATP-dependent DNA hel 99.8 5E-17 1.1E-21 200.9 28.8 86 893-980 495-583 (681)
47 PLN03137 ATP-dependent DNA hel 99.8 3.8E-17 8.3E-22 201.7 23.8 102 879-982 682-783 (1195)
48 PRK10689 transcription-repair 99.8 1.9E-16 4.2E-21 202.5 30.3 100 879-980 811-913 (1147)
49 TIGR03817 DECH_helic helicase/ 99.7 2.2E-15 4.9E-20 187.1 28.8 112 879-994 273-392 (742)
50 PRK13767 ATP-dependent helicas 99.7 3.9E-15 8.4E-20 188.6 28.0 102 879-982 286-394 (876)
51 PRK02362 ski2-like helicase; P 99.7 2.3E-15 5.1E-20 188.6 25.8 82 903-986 305-395 (737)
52 COG0513 SrmB Superfamily II DN 99.7 1E-14 2.3E-19 174.6 29.1 105 879-987 275-379 (513)
53 PRK01172 ski2-like helicase; P 99.6 2.2E-14 4.7E-19 178.6 28.1 72 904-978 288-368 (674)
54 KOG0330 ATP-dependent RNA heli 99.6 1.1E-14 2.5E-19 158.0 19.8 109 879-991 302-410 (476)
55 KOG0328 Predicted ATP-dependen 99.6 8.1E-15 1.8E-19 152.7 17.4 109 879-991 268-376 (400)
56 TIGR01587 cas3_core CRISPR-ass 99.6 6.3E-14 1.4E-18 161.6 26.2 105 879-988 224-338 (358)
57 TIGR03714 secA2 accessory Sec 99.6 2E-14 4.3E-19 174.1 22.6 116 830-979 406-530 (762)
58 TIGR00348 hsdR type I site-spe 99.6 4.7E-14 1E-18 173.8 26.1 105 879-985 516-648 (667)
59 PRK00254 ski2-like helicase; P 99.6 9.9E-14 2.2E-18 173.6 27.8 85 903-989 297-389 (720)
60 cd00079 HELICc Helicase superf 99.6 3.8E-15 8.2E-20 145.2 11.3 120 832-982 12-131 (131)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.6 1.5E-13 3.2E-18 168.2 27.5 101 879-984 274-390 (844)
62 PRK09200 preprotein translocas 99.6 2.7E-13 5.8E-18 165.9 28.6 116 830-978 410-533 (790)
63 COG1200 RecG RecG-like helicas 99.6 2.1E-13 4.5E-18 160.0 26.0 75 901-977 507-582 (677)
64 PRK12898 secA preprotein trans 99.6 4.4E-13 9.5E-18 160.8 28.7 116 830-978 455-578 (656)
65 KOG0335 ATP-dependent RNA heli 99.6 4.4E-13 9.5E-18 152.5 24.2 104 877-982 337-440 (482)
66 COG4096 HsdR Type I site-speci 99.5 1E-13 2.2E-18 164.3 16.9 106 878-985 427-545 (875)
67 KOG0333 U5 snRNP-like RNA heli 99.5 7.4E-13 1.6E-17 148.6 22.5 125 830-989 501-625 (673)
68 TIGR00963 secA preprotein tran 99.5 2.3E-13 5.1E-18 163.9 19.1 116 831-979 388-510 (745)
69 KOG0350 DEAD-box ATP-dependent 99.5 3.8E-13 8.2E-18 150.2 18.8 104 879-986 431-538 (620)
70 PHA02653 RNA helicase NPH-II; 99.5 3.6E-12 7.9E-17 155.2 29.1 108 879-992 397-518 (675)
71 PRK05580 primosome assembly pr 99.5 9.5E-13 2.1E-17 162.5 22.4 93 890-984 439-547 (679)
72 PRK09401 reverse gyrase; Revie 99.5 1.8E-12 3.8E-17 166.9 24.5 89 879-973 330-431 (1176)
73 KOG0348 ATP-dependent RNA heli 99.5 1.3E-12 2.7E-17 147.0 18.6 137 833-1002 408-566 (708)
74 PF04851 ResIII: Type III rest 99.5 1.7E-13 3.7E-18 141.7 11.0 167 298-575 2-183 (184)
75 TIGR03158 cas3_cyano CRISPR-as 99.5 7.1E-12 1.5E-16 144.0 24.9 82 879-971 274-357 (357)
76 PF00271 Helicase_C: Helicase 99.5 6.2E-14 1.3E-18 124.5 5.8 78 895-974 1-78 (78)
77 KOG4284 DEAD box protein [Tran 99.5 5.4E-13 1.2E-17 152.2 14.1 107 879-988 274-380 (980)
78 smart00487 DEXDc DEAD-like hel 99.4 1E-12 2.2E-17 136.7 12.6 164 298-580 7-176 (201)
79 KOG0343 RNA Helicase [RNA proc 99.4 8.2E-12 1.8E-16 140.9 19.8 135 831-1001 298-434 (758)
80 PRK09751 putative ATP-dependen 99.4 2.5E-11 5.3E-16 157.0 24.6 93 879-973 246-371 (1490)
81 KOG0336 ATP-dependent RNA heli 99.4 2E-11 4.2E-16 133.2 18.6 108 878-988 466-573 (629)
82 cd00046 DEXDc DEAD-like helica 99.4 3.8E-12 8.2E-17 124.4 12.1 137 323-574 2-144 (144)
83 COG0514 RecQ Superfamily II DN 99.4 2.1E-11 4.5E-16 143.9 20.1 107 879-989 232-338 (590)
84 KOG0342 ATP-dependent RNA heli 99.4 2.5E-11 5.4E-16 136.1 19.6 96 879-976 332-427 (543)
85 TIGR00595 priA primosomal prot 99.4 3.2E-11 6.9E-16 144.0 21.5 92 892-985 273-380 (505)
86 COG1201 Lhr Lhr-like helicases 99.3 9.1E-11 2E-15 143.3 24.9 114 879-998 255-370 (814)
87 TIGR01054 rgy reverse gyrase. 99.3 6.8E-11 1.5E-15 152.6 25.0 74 879-957 328-408 (1171)
88 smart00490 HELICc helicase sup 99.3 2E-12 4.3E-17 115.0 7.3 81 892-974 2-82 (82)
89 COG1205 Distinct helicase fami 99.3 1E-10 2.2E-15 146.5 24.0 114 879-996 308-430 (851)
90 PRK12906 secA preprotein trans 99.3 1.2E-10 2.5E-15 142.1 23.5 117 830-979 422-546 (796)
91 TIGR01970 DEAH_box_HrpB ATP-de 99.3 1.9E-10 4.2E-15 143.5 26.0 106 879-989 211-337 (819)
92 KOG0340 ATP-dependent RNA heli 99.3 2.7E-10 5.8E-15 123.1 22.6 97 879-977 256-352 (442)
93 KOG0339 ATP-dependent RNA heli 99.3 1.5E-10 3.2E-15 129.6 20.8 128 830-991 451-578 (731)
94 KOG0326 ATP-dependent RNA heli 99.3 2.6E-11 5.6E-16 128.8 12.8 96 879-976 324-419 (459)
95 PRK14701 reverse gyrase; Provi 99.3 2.1E-10 4.7E-15 151.0 24.0 92 879-976 332-446 (1638)
96 PRK13104 secA preprotein trans 99.3 5.7E-10 1.2E-14 136.8 25.6 129 830-996 426-592 (896)
97 COG1197 Mfd Transcription-repa 99.3 9.2E-10 2E-14 136.5 27.4 117 879-999 805-929 (1139)
98 PRK11664 ATP-dependent RNA hel 99.3 6.8E-10 1.5E-14 138.9 25.7 107 879-990 214-341 (812)
99 KOG0338 ATP-dependent RNA heli 99.2 9.9E-11 2.1E-15 131.3 15.9 100 879-980 428-528 (691)
100 COG1204 Superfamily II helicas 99.2 2.9E-10 6.2E-15 140.6 21.8 104 299-470 31-135 (766)
101 PRK09694 helicase Cas3; Provis 99.2 1.6E-09 3.5E-14 135.4 25.2 95 879-976 562-665 (878)
102 KOG0345 ATP-dependent RNA heli 99.2 2.3E-09 5E-14 119.8 22.7 118 831-981 240-359 (567)
103 COG1202 Superfamily II helicas 99.2 2.3E-09 5E-14 122.0 21.7 106 879-987 442-552 (830)
104 PRK12904 preprotein translocas 99.2 3.7E-09 8.1E-14 129.6 25.3 120 830-982 412-569 (830)
105 KOG0344 ATP-dependent RNA heli 99.2 1.1E-09 2.4E-14 126.0 18.6 119 831-982 372-492 (593)
106 PRK13107 preprotein translocas 99.1 8.8E-09 1.9E-13 126.1 26.2 129 830-996 431-596 (908)
107 COG4889 Predicted helicase [Ge 99.1 6.5E-10 1.4E-14 130.8 15.4 77 901-978 499-577 (1518)
108 KOG0347 RNA helicase [RNA proc 99.1 7.3E-10 1.6E-14 125.5 14.1 95 879-975 465-559 (731)
109 cd00268 DEADc DEAD-box helicas 99.0 2.1E-09 4.6E-14 113.6 13.3 159 299-575 21-185 (203)
110 PRK12900 secA preprotein trans 99.0 1.7E-07 3.8E-12 115.4 29.2 130 830-997 580-717 (1025)
111 PRK05298 excinuclease ABC subu 99.0 4.3E-07 9.4E-12 112.2 31.3 123 831-987 429-556 (652)
112 TIGR01967 DEAH_box_HrpA ATP-de 98.9 4E-08 8.7E-13 126.1 22.0 106 879-991 281-407 (1283)
113 KOG0334 RNA helicase [RNA proc 98.9 2E-08 4.4E-13 122.5 18.0 124 830-987 596-719 (997)
114 KOG0346 RNA helicase [RNA proc 98.9 1.3E-08 2.8E-13 113.0 14.5 107 879-988 270-410 (569)
115 KOG0332 ATP-dependent RNA heli 98.9 1.5E-08 3.1E-13 110.5 12.9 105 879-987 332-442 (477)
116 PRK11131 ATP-dependent RNA hel 98.9 8E-08 1.7E-12 123.0 21.2 106 879-991 288-414 (1294)
117 PRK12326 preprotein translocas 98.9 4.3E-07 9.3E-12 109.2 25.8 130 830-997 409-553 (764)
118 PF00270 DEAD: DEAD/DEAH box h 98.8 7.6E-09 1.7E-13 105.6 9.1 158 302-581 2-168 (169)
119 KOG0952 DNA/RNA helicase MER3/ 98.8 6.3E-07 1.4E-11 109.0 23.9 83 907-991 402-494 (1230)
120 COG1203 CRISPR-associated heli 98.8 4.7E-07 1E-11 113.5 23.4 126 878-1006 441-570 (733)
121 KOG0341 DEAD-box protein abstr 98.8 2E-08 4.4E-13 109.4 9.2 137 831-1003 407-547 (610)
122 PF13872 AAA_34: P-loop contai 98.7 1.8E-07 3.8E-12 102.1 15.3 250 290-666 27-302 (303)
123 PF11496 HDA2-3: Class II hist 98.7 7.9E-07 1.7E-11 98.8 18.7 225 648-999 4-256 (297)
124 PRK12899 secA preprotein trans 98.7 4.9E-06 1.1E-10 102.7 26.1 130 830-997 550-687 (970)
125 COG4098 comFA Superfamily II D 98.6 7.1E-06 1.5E-10 89.2 23.6 103 879-985 307-415 (441)
126 TIGR00631 uvrb excinuclease AB 98.6 2.6E-07 5.7E-12 113.4 13.9 125 831-989 425-554 (655)
127 KOG0351 ATP-dependent DNA heli 98.6 7.5E-07 1.6E-11 111.7 17.1 104 879-984 487-590 (941)
128 KOG1513 Nuclear helicase MOP-3 98.6 4E-06 8.6E-11 98.8 21.3 84 920-1005 850-941 (1300)
129 KOG0352 ATP-dependent DNA heli 98.5 1.5E-06 3.3E-11 96.2 15.5 103 879-983 257-359 (641)
130 PRK13103 secA preprotein trans 98.5 4.8E-06 1E-10 102.7 21.2 120 830-982 431-587 (913)
131 KOG0337 ATP-dependent RNA heli 98.5 1.7E-06 3.6E-11 96.1 14.3 123 831-987 245-367 (529)
132 TIGR00596 rad1 DNA repair prot 98.5 8.1E-06 1.8E-10 101.8 21.7 60 949-1011 478-538 (814)
133 COG1198 PriA Primosomal protei 98.4 8.1E-06 1.8E-10 99.9 18.9 94 892-987 495-604 (730)
134 PRK12903 secA preprotein trans 98.4 4.1E-05 8.8E-10 93.8 24.2 119 830-981 408-534 (925)
135 KOG0327 Translation initiation 98.4 9.9E-07 2.1E-11 97.4 8.6 106 879-988 265-370 (397)
136 COG0556 UvrB Helicase subunit 98.4 0.00052 1.1E-08 79.2 30.4 137 831-999 429-570 (663)
137 PF13871 Helicase_C_4: Helicas 98.4 1.3E-06 2.9E-11 95.0 9.4 93 918-1012 52-152 (278)
138 KOG0947 Cytoplasmic exosomal R 98.2 4.3E-05 9.3E-10 92.5 16.7 74 906-982 635-717 (1248)
139 COG1110 Reverse gyrase [DNA re 98.1 6E-05 1.3E-09 92.4 17.9 73 879-957 337-416 (1187)
140 KOG0951 RNA helicase BRR2, DEA 98.1 0.00017 3.6E-09 89.7 20.3 71 902-974 608-688 (1674)
141 KOG0353 ATP-dependent DNA heli 98.1 0.00019 4.1E-09 78.6 17.8 104 879-984 319-465 (695)
142 PRK12901 secA preprotein trans 97.9 0.0034 7.4E-08 78.6 26.1 119 830-981 610-736 (1112)
143 KOG0349 Putative DEAD-box RNA 97.8 4.8E-05 1E-09 84.6 8.0 94 878-973 506-602 (725)
144 KOG0823 Predicted E3 ubiquitin 97.8 1E-05 2.2E-10 83.8 2.2 55 740-796 44-100 (230)
145 CHL00122 secA preprotein trans 97.8 0.0029 6.3E-08 78.4 23.5 83 830-944 406-489 (870)
146 PF07652 Flavi_DEAD: Flaviviru 97.8 0.00012 2.7E-09 71.6 9.3 100 410-575 34-137 (148)
147 PRK15483 type III restriction- 97.6 0.00053 1.2E-08 86.1 13.6 37 539-576 204-240 (986)
148 PLN03208 E3 ubiquitin-protein 97.5 4.5E-05 9.7E-10 78.0 2.7 54 742-795 17-83 (193)
149 KOG0948 Nuclear exosomal RNA h 97.5 0.003 6.6E-08 75.3 17.0 76 916-994 461-544 (1041)
150 KOG0329 ATP-dependent RNA heli 97.4 0.0017 3.7E-08 68.2 12.9 45 933-977 302-346 (387)
151 smart00504 Ubox Modified RING 97.4 7.5E-05 1.6E-09 63.2 1.5 48 744-794 2-49 (63)
152 PF13923 zf-C3HC4_2: Zinc fing 97.3 8E-05 1.7E-09 56.7 1.3 37 746-783 1-38 (39)
153 KOG0949 Predicted helicase, DE 97.3 0.011 2.5E-07 72.5 19.7 69 907-977 968-1037(1330)
154 KOG0953 Mitochondrial RNA heli 97.3 0.00064 1.4E-08 78.6 8.5 107 877-987 358-476 (700)
155 PF15227 zf-C3HC4_4: zinc fing 97.3 0.00013 2.8E-09 56.4 1.9 33 746-778 1-33 (42)
156 KOG0320 Predicted E3 ubiquitin 97.3 9.6E-05 2.1E-09 73.4 1.4 44 742-786 130-175 (187)
157 PF02399 Herpes_ori_bp: Origin 97.3 0.045 9.8E-07 67.5 24.1 91 879-977 284-380 (824)
158 COG0610 Type I site-specific r 97.2 0.0011 2.4E-08 85.3 10.8 69 915-985 579-650 (962)
159 COG1643 HrpA HrpA-like helicas 97.2 0.024 5.3E-07 71.2 21.9 107 879-991 261-390 (845)
160 KOG2164 Predicted E3 ubiquitin 97.2 0.00015 3.3E-09 83.1 2.4 51 743-793 186-238 (513)
161 PRK12902 secA preprotein trans 97.1 0.032 7E-07 69.5 21.0 85 830-946 421-506 (939)
162 KOG0978 E3 ubiquitin ligase in 97.1 0.00013 2.9E-09 87.7 0.4 50 743-794 643-692 (698)
163 KOG0317 Predicted E3 ubiquitin 97.1 0.00025 5.5E-09 75.8 2.3 52 742-796 238-289 (293)
164 KOG0922 DEAH-box RNA helicase 97.0 0.072 1.6E-06 63.8 21.5 110 879-991 260-393 (674)
165 TIGR01407 dinG_rel DnaQ family 96.9 0.0057 1.2E-07 78.7 13.1 97 879-980 676-808 (850)
166 COG4581 Superfamily II RNA hel 96.8 0.0063 1.4E-07 77.0 10.9 75 906-982 449-531 (1041)
167 smart00488 DEXDc2 DEAD-like he 96.7 0.01 2.2E-07 66.5 10.9 44 298-344 7-50 (289)
168 smart00489 DEXDc3 DEAD-like he 96.7 0.01 2.2E-07 66.5 10.9 44 298-344 7-50 (289)
169 TIGR00599 rad18 DNA repair pro 96.7 0.00068 1.5E-08 77.7 1.6 48 742-792 25-72 (397)
170 PF00097 zf-C3HC4: Zinc finger 96.7 0.00079 1.7E-08 51.7 1.5 37 746-782 1-39 (41)
171 KOG0920 ATP-dependent RNA heli 96.7 0.19 4.1E-06 63.4 22.6 105 878-988 414-544 (924)
172 PHA02929 N1R/p28-like protein; 96.6 0.0013 2.8E-08 70.4 2.7 47 742-791 173-227 (238)
173 PF13086 AAA_11: AAA domain; P 96.6 0.038 8.2E-07 59.0 14.1 40 299-345 1-41 (236)
174 PF13920 zf-C3HC4_3: Zinc fing 96.5 0.0012 2.6E-08 53.2 1.5 46 743-791 2-48 (50)
175 TIGR03117 cas_csf4 CRISPR-asso 96.5 0.02 4.4E-07 70.1 12.6 79 879-961 473-564 (636)
176 PF13445 zf-RING_UBOX: RING-ty 96.4 0.001 2.2E-08 51.6 0.3 30 746-776 1-34 (43)
177 KOG0950 DNA polymerase theta/e 96.2 0.36 7.9E-06 60.1 20.9 69 904-975 525-598 (1008)
178 COG0653 SecA Preprotein transl 96.2 0.39 8.5E-06 59.9 21.0 112 830-974 411-533 (822)
179 PF04564 U-box: U-box domain; 96.0 0.0025 5.4E-08 55.8 1.1 50 743-794 4-53 (73)
180 smart00184 RING Ring finger. E 96.0 0.0038 8.1E-08 46.5 2.0 37 746-782 1-37 (39)
181 PHA02926 zinc finger-like prot 95.9 0.0044 9.5E-08 64.2 2.2 49 741-791 168-230 (242)
182 cd00162 RING RING-finger (Real 95.8 0.0047 1E-07 47.7 1.8 38 745-782 1-39 (45)
183 COG3587 Restriction endonuclea 95.7 0.032 7E-07 68.1 9.1 35 539-574 208-242 (985)
184 PF13639 zf-RING_2: Ring finge 95.7 0.0027 5.8E-08 49.6 -0.0 38 745-783 2-42 (44)
185 PF14634 zf-RING_5: zinc-RING 95.6 0.0084 1.8E-07 46.9 2.3 38 745-783 1-41 (44)
186 KOG1133 Helicase of the DEAD s 95.5 0.69 1.5E-05 55.8 18.7 80 879-959 631-721 (821)
187 KOG0824 Predicted E3 ubiquitin 95.5 0.008 1.7E-07 64.8 2.6 58 742-801 6-63 (324)
188 TIGR00570 cdk7 CDK-activating 95.5 0.0095 2.1E-07 65.7 3.3 50 743-794 3-57 (309)
189 PRK10536 hypothetical protein; 95.5 0.025 5.4E-07 61.4 6.2 41 537-579 177-217 (262)
190 COG5432 RAD18 RING-finger-cont 95.4 0.0057 1.2E-07 65.0 1.2 41 742-783 24-64 (391)
191 KOG1802 RNA helicase nonsense 95.4 0.068 1.5E-06 63.5 9.8 81 299-450 410-491 (935)
192 COG5574 PEX10 RING-finger-cont 95.4 0.0074 1.6E-07 64.1 1.7 46 742-789 214-260 (271)
193 KOG0287 Postreplication repair 95.4 0.0034 7.3E-08 68.1 -0.9 41 742-783 22-62 (442)
194 PRK07246 bifunctional ATP-depe 95.2 0.1 2.2E-06 66.6 11.7 97 879-980 649-777 (820)
195 PF11789 zf-Nse: Zinc-finger o 95.2 0.0078 1.7E-07 49.8 1.0 46 742-787 10-57 (57)
196 PF02562 PhoH: PhoH-like prote 95.1 0.043 9.4E-07 57.9 6.6 44 535-580 118-161 (205)
197 PF13307 Helicase_C_2: Helicas 95.1 0.091 2E-06 53.8 8.9 98 878-981 10-145 (167)
198 COG0553 HepA Superfamily II DN 94.9 0.018 3.8E-07 74.6 3.7 80 880-976 445-524 (866)
199 PF14835 zf-RING_6: zf-RING of 94.9 0.018 3.9E-07 48.1 2.4 44 743-791 7-51 (65)
200 PRK08074 bifunctional ATP-depe 94.5 0.27 5.8E-06 64.0 12.7 100 879-980 754-887 (928)
201 PRK14873 primosome assembly pr 94.4 0.19 4.1E-06 62.4 10.6 58 410-470 189-253 (665)
202 TIGR01407 dinG_rel DnaQ family 93.7 0.34 7.3E-06 62.6 11.4 44 297-343 243-286 (850)
203 KOG4172 Predicted E3 ubiquitin 93.3 0.025 5.5E-07 45.0 0.1 48 742-791 6-54 (62)
204 smart00492 HELICc3 helicase su 93.3 0.41 8.9E-06 47.6 8.8 68 889-958 3-79 (141)
205 KOG2879 Predicted E3 ubiquitin 93.1 0.059 1.3E-06 57.6 2.5 48 741-790 237-286 (298)
206 PRK08074 bifunctional ATP-depe 93.0 0.59 1.3E-05 60.9 12.0 42 298-342 256-297 (928)
207 KOG1132 Helicase of the DEAD s 92.9 0.65 1.4E-05 57.5 11.2 82 879-961 563-659 (945)
208 TIGR00376 DNA helicase, putati 92.8 1.5 3.2E-05 54.7 14.5 42 297-344 155-196 (637)
209 COG5540 RING-finger-containing 92.7 0.048 1E-06 58.8 1.3 48 742-791 322-372 (374)
210 KOG1785 Tyrosine kinase negati 92.7 0.075 1.6E-06 59.1 2.7 50 740-789 366-416 (563)
211 KOG4150 Predicted ATP-dependen 92.6 0.3 6.6E-06 57.1 7.5 117 829-976 506-630 (1034)
212 COG1199 DinG Rad3-related DNA 92.5 0.81 1.8E-05 57.5 12.1 99 879-981 481-612 (654)
213 PF07517 SecA_DEAD: SecA DEAD- 92.2 0.34 7.3E-06 53.3 7.1 58 410-471 119-180 (266)
214 KOG0311 Predicted E3 ubiquitin 92.1 0.027 5.8E-07 62.2 -1.6 49 742-792 42-91 (381)
215 PRK11747 dinG ATP-dependent DN 91.9 1 2.2E-05 56.9 11.8 75 879-958 536-616 (697)
216 PF13604 AAA_30: AAA domain; P 91.9 1.1 2.4E-05 47.1 10.5 39 299-342 1-39 (196)
217 TIGR00604 rad3 DNA repair heli 91.9 0.96 2.1E-05 57.3 11.6 101 879-981 524-669 (705)
218 TIGR02562 cas3_yersinia CRISPR 91.7 5.8 0.00013 51.1 17.7 58 918-978 824-884 (1110)
219 COG5222 Uncharacterized conser 91.7 0.078 1.7E-06 56.8 1.4 44 744-787 275-319 (427)
220 PF09848 DUF2075: Uncharacteri 91.4 0.66 1.4E-05 53.6 8.7 16 535-550 82-97 (352)
221 KOG1803 DNA helicase [Replicat 91.3 0.16 3.5E-06 60.3 3.5 44 295-344 181-224 (649)
222 COG5152 Uncharacterized conser 91.2 0.07 1.5E-06 54.0 0.3 35 741-775 194-229 (259)
223 PHA02533 17 large terminase pr 90.9 2.8 6.1E-05 51.0 13.7 42 296-344 56-97 (534)
224 KOG2177 Predicted E3 ubiquitin 90.5 0.1 2.2E-06 58.5 0.9 43 742-787 12-54 (386)
225 KOG1131 RNA polymerase II tran 90.1 2.4 5.3E-05 49.6 11.3 45 300-347 17-61 (755)
226 PF12678 zf-rbx1: RING-H2 zinc 89.9 0.19 4.2E-06 43.9 2.0 41 742-783 18-71 (73)
227 KOG0826 Predicted E3 ubiquitin 89.8 0.13 2.9E-06 56.2 1.1 51 739-790 296-347 (357)
228 smart00491 HELICc2 helicase su 89.7 1.2 2.5E-05 44.5 7.6 69 889-958 3-80 (142)
229 PRK07246 bifunctional ATP-depe 89.3 2.8 6.1E-05 53.9 12.5 42 298-342 244-285 (820)
230 KOG4159 Predicted E3 ubiquitin 89.0 0.18 4E-06 58.1 1.5 48 742-792 83-130 (398)
231 TIGR01447 recD exodeoxyribonuc 89.0 2.5 5.3E-05 52.1 11.2 40 536-577 259-298 (586)
232 PRK10875 recD exonuclease V su 88.8 2.5 5.5E-05 52.2 11.2 42 535-578 264-305 (615)
233 KOG4628 Predicted E3 ubiquitin 88.5 0.21 4.6E-06 56.2 1.5 43 744-786 230-275 (348)
234 TIGR01448 recD_rel helicase, p 88.2 2.2 4.7E-05 54.1 10.3 40 536-577 416-455 (720)
235 KOG2660 Locus-specific chromos 88.1 0.12 2.6E-06 56.9 -0.6 47 743-792 15-62 (331)
236 KOG0926 DEAH-box RNA helicase 87.9 0.73 1.6E-05 56.3 5.4 22 323-344 273-294 (1172)
237 PF06862 DUF1253: Protein of u 86.9 8.2 0.00018 45.6 13.3 122 879-1001 302-430 (442)
238 KOG0802 E3 ubiquitin ligase [P 85.5 0.29 6.3E-06 59.8 0.5 45 741-786 289-338 (543)
239 KOG1813 Predicted E3 ubiquitin 85.2 0.36 7.9E-06 52.3 1.0 48 742-792 240-287 (313)
240 COG5220 TFB3 Cdk activating ki 83.9 0.3 6.5E-06 51.0 -0.3 52 742-793 9-66 (314)
241 PRK04296 thymidine kinase; Pro 83.5 3 6.6E-05 43.6 7.1 35 536-572 78-113 (190)
242 PF05876 Terminase_GpA: Phage 82.9 5.3 0.00011 49.0 9.8 56 532-587 130-192 (557)
243 KOG4692 Predicted E3 ubiquitin 82.6 0.6 1.3E-05 51.5 1.3 35 741-775 420-454 (489)
244 KOG1734 Predicted RING-contain 81.3 0.59 1.3E-05 49.9 0.7 54 742-797 223-287 (328)
245 KOG1805 DNA replication helica 81.2 6.5 0.00014 49.7 9.4 42 299-346 669-710 (1100)
246 COG1875 NYN ribonuclease and A 80.9 2.9 6.3E-05 47.4 5.9 42 300-346 229-270 (436)
247 KOG0827 Predicted E3 ubiquitin 80.1 0.92 2E-05 50.9 1.7 52 743-796 4-61 (465)
248 KOG1814 Predicted E3 ubiquitin 78.6 1.1 2.4E-05 50.9 1.7 58 736-793 177-244 (445)
249 PF06733 DEAD_2: DEAD_2; Inte 78.4 1.1 2.5E-05 46.0 1.7 16 455-470 117-132 (174)
250 PRK07003 DNA polymerase III su 77.9 12 0.00027 46.8 10.5 53 536-590 119-174 (830)
251 KOG3039 Uncharacterized conser 77.5 1.1 2.4E-05 47.2 1.3 33 743-775 43-75 (303)
252 KOG0297 TNF receptor-associate 77.2 1.4 3.1E-05 51.4 2.3 41 742-783 20-61 (391)
253 PF12340 DUF3638: Protein of u 75.7 13 0.00029 39.9 8.8 111 297-470 21-143 (229)
254 PF12861 zf-Apc11: Anaphase-pr 75.5 2.4 5.1E-05 38.0 2.6 44 745-790 34-81 (85)
255 COG5243 HRD1 HRD ubiquitin lig 74.8 1.7 3.6E-05 48.5 1.8 50 738-790 282-344 (491)
256 KOG1039 Predicted E3 ubiquitin 74.2 1.6 3.5E-05 49.6 1.5 46 741-788 159-218 (344)
257 TIGR02881 spore_V_K stage V sp 74.1 5.8 0.00013 43.7 6.0 21 324-344 45-65 (261)
258 PRK09112 DNA polymerase III su 74.1 23 0.00049 40.9 10.9 45 300-345 25-69 (351)
259 KOG0828 Predicted E3 ubiquitin 73.6 1.3 2.9E-05 51.0 0.7 45 743-787 571-632 (636)
260 PF13401 AAA_22: AAA domain; P 71.7 3 6.4E-05 40.2 2.6 35 538-574 89-125 (131)
261 PLN03025 replication factor C 70.3 54 0.0012 37.2 12.9 56 536-591 99-155 (319)
262 TIGR03420 DnaA_homol_Hda DnaA 70.1 40 0.00086 35.8 11.2 23 322-344 39-61 (226)
263 KOG3800 Predicted E3 ubiquitin 69.8 2.5 5.4E-05 46.1 1.7 47 745-793 2-53 (300)
264 TIGR00631 uvrb excinuclease AB 69.6 17 0.00037 45.5 9.2 70 300-434 10-80 (655)
265 KOG4265 Predicted E3 ubiquitin 69.2 2.1 4.6E-05 48.1 1.0 49 742-793 289-338 (349)
266 KOG4739 Uncharacterized protei 69.0 2.4 5.3E-05 45.2 1.4 42 746-792 6-49 (233)
267 PRK11747 dinG ATP-dependent DN 69.0 3.4 7.4E-05 52.2 3.0 43 298-340 24-68 (697)
268 PRK14960 DNA polymerase III su 66.8 33 0.00072 42.6 10.5 40 302-344 21-60 (702)
269 PF14570 zf-RING_4: RING/Ubox 66.1 4.2 9.2E-05 32.4 1.9 42 746-789 1-46 (48)
270 TIGR00595 priA primosomal prot 64.1 35 0.00077 41.4 10.2 96 828-955 5-101 (505)
271 KOG4275 Predicted E3 ubiquitin 62.5 2.4 5.2E-05 46.0 -0.1 41 743-790 300-341 (350)
272 PRK12402 replication factor C 61.8 12 0.00025 42.6 5.4 22 323-344 38-59 (337)
273 PRK10917 ATP-dependent DNA hel 61.0 42 0.00091 42.5 10.5 73 879-952 312-388 (681)
274 TIGR00604 rad3 DNA repair heli 60.5 21 0.00046 45.3 7.8 43 299-344 10-52 (705)
275 PRK05580 primosome assembly pr 60.0 48 0.001 41.9 10.7 95 829-955 171-266 (679)
276 KOG1645 RING-finger-containing 60.0 2.4 5.3E-05 48.0 -0.6 59 743-802 4-67 (463)
277 KOG3039 Uncharacterized conser 59.8 4.3 9.3E-05 43.0 1.1 50 742-794 220-273 (303)
278 PRK04195 replication factor C 59.6 75 0.0016 38.4 11.9 23 321-343 39-61 (482)
279 TIGR02880 cbbX_cfxQ probable R 59.3 12 0.00027 41.7 4.8 22 323-344 60-81 (284)
280 KOG0952 DNA/RNA helicase MER3/ 58.6 20 0.00042 46.0 6.6 57 407-469 971-1032(1230)
281 PHA02544 44 clamp loader, smal 58.4 85 0.0019 35.3 11.6 38 538-575 102-141 (316)
282 CHL00181 cbbX CbbX; Provisiona 58.3 23 0.00051 39.6 6.8 21 324-344 62-82 (287)
283 KOG0923 mRNA splicing factor A 57.8 27 0.00059 42.6 7.3 100 879-986 475-604 (902)
284 TIGR00365 monothiol glutaredox 57.0 44 0.00094 30.8 7.3 55 879-933 13-73 (97)
285 PHA03368 DNA packaging termina 56.9 49 0.0011 41.1 9.4 40 532-573 348-389 (738)
286 KOG0924 mRNA splicing factor A 56.8 38 0.00082 41.5 8.2 28 941-970 932-959 (1042)
287 KOG0924 mRNA splicing factor A 56.8 22 0.00047 43.5 6.3 114 879-995 565-704 (1042)
288 PF13245 AAA_19: Part of AAA d 56.7 23 0.0005 31.1 5.1 22 325-346 14-35 (76)
289 cd00009 AAA The AAA+ (ATPases 56.5 73 0.0016 30.2 9.3 41 537-577 85-132 (151)
290 KOG1571 Predicted E3 ubiquitin 54.9 5.6 0.00012 44.8 1.1 44 742-791 304-347 (355)
291 PF04641 Rtf2: Rtf2 RING-finge 54.6 8.6 0.00019 42.4 2.5 50 742-795 112-165 (260)
292 TIGR02768 TraA_Ti Ti-type conj 54.6 78 0.0017 40.5 11.3 41 298-344 351-391 (744)
293 KOG0327 Translation initiation 54.4 28 0.00061 39.8 6.4 43 532-574 165-210 (397)
294 COG3421 Uncharacterized protei 54.4 12 0.00026 45.0 3.7 18 329-346 5-22 (812)
295 PF13607 Succ_CoA_lig: Succiny 54.0 46 0.001 33.0 7.3 86 879-985 3-90 (138)
296 TIGR00362 DnaA chromosomal rep 54.0 73 0.0016 37.5 10.4 21 324-344 139-159 (405)
297 PRK00149 dnaA chromosomal repl 54.0 66 0.0014 38.5 10.1 22 323-344 150-171 (450)
298 PRK07764 DNA polymerase III su 53.9 79 0.0017 40.8 11.2 42 301-345 20-61 (824)
299 TIGR03117 cas_csf4 CRISPR-asso 53.8 78 0.0017 39.5 10.7 39 410-448 47-88 (636)
300 KOG1812 Predicted E3 ubiquitin 53.6 5.9 0.00013 46.2 1.0 53 743-795 146-207 (384)
301 PRK12723 flagellar biosynthesi 53.4 57 0.0012 38.2 9.1 56 536-591 254-314 (388)
302 PRK14087 dnaA chromosomal repl 53.4 55 0.0012 39.2 9.2 21 323-343 143-163 (450)
303 TIGR00643 recG ATP-dependent D 53.2 56 0.0012 41.0 9.6 73 879-952 286-362 (630)
304 COG4626 Phage terminase-like p 51.6 1.2E+02 0.0025 36.9 11.2 49 297-345 59-110 (546)
305 COG0464 SpoVK ATPases of the A 51.5 23 0.0005 42.9 5.8 45 300-344 250-299 (494)
306 KOG2932 E3 ubiquitin ligase in 50.2 7.5 0.00016 42.6 1.1 36 744-782 91-127 (389)
307 KOG2114 Vacuolar assembly/sort 50.0 12 0.00026 46.5 2.9 49 734-788 826-880 (933)
308 PRK08084 DNA replication initi 49.8 1.3E+02 0.0027 32.6 10.6 21 323-343 47-67 (235)
309 PRK14958 DNA polymerase III su 49.3 1.7E+02 0.0036 35.7 12.5 56 536-593 119-177 (509)
310 PRK08691 DNA polymerase III su 48.8 2.1E+02 0.0045 36.2 13.2 53 536-590 119-174 (709)
311 KOG0951 RNA helicase BRR2, DEA 48.8 1E+02 0.0022 40.9 10.5 56 409-469 1186-1246(1674)
312 PRK14088 dnaA chromosomal repl 48.7 1.7E+02 0.0037 35.0 12.3 21 324-344 133-153 (440)
313 PRK14949 DNA polymerase III su 48.4 92 0.002 40.2 10.3 20 325-344 42-61 (944)
314 PRK06526 transposase; Provisio 48.3 58 0.0013 35.8 7.7 23 322-344 99-121 (254)
315 PHA03096 p28-like protein; Pro 47.7 7.2 0.00016 43.3 0.6 34 744-777 179-220 (284)
316 KOG0825 PHD Zn-finger protein 47.4 3.8 8.3E-05 49.9 -1.7 48 744-794 124-174 (1134)
317 PRK00440 rfc replication facto 46.8 2.4E+02 0.0052 31.5 12.9 21 324-344 41-61 (319)
318 PF13173 AAA_14: AAA domain 46.8 18 0.0004 34.9 3.2 37 538-575 63-99 (128)
319 PF14447 Prok-RING_4: Prokaryo 46.6 14 0.0003 30.3 1.8 45 743-792 7-51 (55)
320 cd03418 GRX_GRXb_1_3_like Glut 46.5 67 0.0015 27.4 6.5 57 879-935 1-58 (75)
321 cd03028 GRX_PICOT_like Glutare 44.7 68 0.0015 29.0 6.4 56 879-935 9-70 (90)
322 KOG1815 Predicted E3 ubiquitin 44.6 15 0.00032 43.9 2.5 54 742-795 69-130 (444)
323 PRK14952 DNA polymerase III su 44.6 78 0.0017 39.2 8.7 21 325-345 39-59 (584)
324 PRK13889 conjugal transfer rel 43.2 1.1E+02 0.0024 40.3 10.2 42 537-580 434-476 (988)
325 PF13177 DNA_pol3_delta2: DNA 43.1 1.9E+02 0.004 29.3 10.0 23 324-346 22-44 (162)
326 KOG0804 Cytoplasmic Zn-finger 43.1 11 0.00023 43.6 1.0 39 742-783 174-216 (493)
327 PRK10824 glutaredoxin-4; Provi 42.8 79 0.0017 30.3 6.7 61 879-940 16-83 (115)
328 PRK14974 cell division protein 42.5 92 0.002 35.7 8.4 45 537-581 223-271 (336)
329 PRK14086 dnaA chromosomal repl 42.0 95 0.002 38.5 8.8 21 324-344 317-337 (617)
330 PRK14873 primosome assembly pr 41.1 1E+02 0.0022 38.8 9.1 76 830-935 170-247 (665)
331 KOG1493 Anaphase-promoting com 40.8 12 0.00026 32.6 0.7 46 744-789 32-79 (84)
332 COG4646 DNA methylase [Transcr 40.7 16 0.00035 42.5 1.9 31 564-594 473-503 (637)
333 KOG0923 mRNA splicing factor A 40.5 51 0.0011 40.4 6.0 19 324-342 283-301 (902)
334 TIGR00580 mfd transcription-re 40.0 1.2E+02 0.0026 39.7 9.8 74 879-953 502-579 (926)
335 COG1199 DinG Rad3-related DNA 38.8 84 0.0018 39.5 8.2 47 297-346 13-59 (654)
336 KOG4185 Predicted E3 ubiquitin 38.7 18 0.0004 40.5 2.0 46 743-790 3-54 (296)
337 COG5175 MOT2 Transcriptional r 37.9 18 0.00039 40.1 1.7 52 740-793 11-66 (480)
338 PRK14959 DNA polymerase III su 37.9 2.5E+02 0.0053 35.1 11.5 41 302-345 22-62 (624)
339 COG1198 PriA Primosomal protei 37.8 71 0.0015 40.4 7.0 84 825-938 222-306 (730)
340 PRK08727 hypothetical protein; 37.7 1.9E+02 0.0041 31.2 9.6 21 324-344 44-64 (233)
341 PRK14951 DNA polymerase III su 37.5 1.7E+02 0.0037 36.5 10.2 21 325-345 42-62 (618)
342 PF03354 Terminase_1: Phage Te 37.0 1.4E+02 0.003 36.1 9.3 45 302-346 1-47 (477)
343 cd01121 Sms Sms (bacterial rad 36.1 1.7E+02 0.0037 34.1 9.5 20 325-344 86-105 (372)
344 PRK05703 flhF flagellar biosyn 35.4 1.5E+02 0.0033 35.2 9.1 55 536-591 299-359 (424)
345 PHA03372 DNA packaging termina 35.3 1.1E+02 0.0023 37.8 7.6 41 532-573 295-336 (668)
346 COG5194 APC11 Component of SCF 34.8 27 0.00058 30.8 1.9 26 757-783 50-75 (88)
347 PRK10689 transcription-repair 32.9 1.8E+02 0.0039 39.2 9.9 73 879-952 651-727 (1147)
348 KOG3579 Predicted E3 ubiquitin 31.5 18 0.00039 39.3 0.4 40 744-783 269-316 (352)
349 PRK11054 helD DNA helicase IV; 31.3 71 0.0015 40.4 5.7 38 299-345 196-233 (684)
350 KOG0926 DEAH-box RNA helicase 31.1 41 0.00089 42.0 3.3 61 922-985 622-701 (1172)
351 PRK05707 DNA polymerase III su 30.8 2.3E+02 0.0049 32.5 9.2 46 299-347 3-48 (328)
352 PRK13826 Dtr system oriT relax 30.7 2.2E+02 0.0048 37.9 10.1 42 538-581 470-512 (1102)
353 PHA00673 acetyltransferase dom 30.7 69 0.0015 32.4 4.4 44 537-580 88-134 (154)
354 PRK09111 DNA polymerase III su 30.3 3.4E+02 0.0074 33.8 11.2 42 301-345 29-70 (598)
355 PRK12422 chromosomal replicati 29.8 1.9E+02 0.0041 34.7 8.6 21 324-344 144-164 (445)
356 PRK11889 flhF flagellar biosyn 29.5 3.1E+02 0.0067 32.4 9.9 56 536-591 320-379 (436)
357 cd05568 PTS_IIB_bgl_like PTS_I 29.5 83 0.0018 27.6 4.4 53 411-467 2-56 (85)
358 cd03031 GRX_GRX_like Glutaredo 29.2 1.5E+02 0.0032 29.8 6.4 47 879-925 1-54 (147)
359 cd05566 PTS_IIB_galactitol PTS 29.1 64 0.0014 28.9 3.6 55 411-467 2-58 (89)
360 PRK14965 DNA polymerase III su 28.4 3.8E+02 0.0083 33.2 11.3 21 325-345 42-62 (576)
361 CHL00095 clpC Clp protease ATP 28.0 1.4E+02 0.0031 38.7 7.8 22 323-344 202-223 (821)
362 smart00744 RINGv The RING-vari 27.9 40 0.00087 27.0 1.8 39 745-783 1-47 (49)
363 PRK07993 DNA polymerase III su 26.6 2.9E+02 0.0063 31.7 9.1 49 299-347 2-50 (334)
364 PF10367 Vps39_2: Vacuolar sor 26.4 36 0.00079 31.5 1.5 30 742-771 77-108 (109)
365 TIGR03345 VI_ClpV1 type VI sec 26.0 2.9E+02 0.0062 36.1 9.9 37 307-344 195-231 (852)
366 PF00462 Glutaredoxin: Glutare 25.8 2.7E+02 0.0058 22.6 6.5 45 880-924 1-46 (60)
367 PTZ00062 glutaredoxin; Provisi 25.8 2.5E+02 0.0055 29.7 7.8 58 879-937 114-177 (204)
368 PF00580 UvrD-helicase: UvrD/R 25.1 97 0.0021 34.3 5.0 37 300-345 1-37 (315)
369 cd03027 GRX_DEP Glutaredoxin ( 24.8 2.5E+02 0.0055 23.8 6.4 58 879-937 2-60 (73)
370 COG2247 LytB Putative cell wal 24.7 1.4E+02 0.0031 33.6 5.8 59 877-935 76-139 (337)
371 KOG2817 Predicted E3 ubiquitin 24.5 40 0.00088 38.7 1.6 41 742-782 333-378 (394)
372 PRK06893 DNA replication initi 24.4 3.8E+02 0.0082 28.7 9.1 20 325-344 43-62 (229)
373 PRK14971 DNA polymerase III su 24.3 7.8E+02 0.017 30.8 12.9 58 536-595 121-181 (614)
374 PRK05642 DNA replication initi 24.2 3.7E+02 0.008 29.0 9.0 36 538-573 99-138 (234)
375 cd05563 PTS_IIB_ascorbate PTS_ 24.1 1.5E+02 0.0033 26.2 5.0 52 412-467 2-55 (86)
376 PRK13556 azoreductase; Provisi 23.4 48 0.001 35.1 1.9 30 945-974 87-119 (208)
377 PF05621 TniB: Bacterial TniB 23.4 48 0.001 37.2 1.9 43 532-574 141-189 (302)
378 KOG4367 Predicted Zn-finger pr 23.1 33 0.00072 39.2 0.6 33 743-775 4-36 (699)
379 KOG0925 mRNA splicing factor A 23.0 58 0.0013 38.5 2.5 45 536-584 159-211 (699)
380 PRK07952 DNA replication prote 23.0 2.4E+02 0.0053 30.7 7.3 44 302-345 79-123 (244)
381 KOG2979 Protein involved in DN 22.5 65 0.0014 35.0 2.6 47 741-787 174-222 (262)
382 COG1200 RecG RecG-like helicas 22.4 2E+02 0.0043 35.8 6.9 65 888-953 326-390 (677)
383 PRK06871 DNA polymerase III su 22.2 5.6E+02 0.012 29.3 10.3 49 299-347 2-50 (325)
384 cd00133 PTS_IIB PTS_IIB: subun 21.5 1.7E+02 0.0038 24.9 4.9 53 412-467 2-56 (84)
385 TIGR00614 recQ_fam ATP-depende 21.4 2.7E+02 0.0059 33.5 8.0 60 879-939 53-112 (470)
386 cd06533 Glyco_transf_WecG_TagA 21.2 5.3E+02 0.012 26.3 9.1 57 879-936 48-107 (171)
387 PRK13342 recombination factor 21.0 2.8E+02 0.006 32.8 7.8 20 323-342 38-57 (413)
388 COG1702 PhoH Phosphate starvat 20.8 53 0.0012 37.3 1.6 40 538-579 245-284 (348)
389 PF10593 Z1: Z1 domain; Inter 20.7 4.7E+02 0.01 28.5 8.9 109 884-1001 94-205 (239)
390 cd01524 RHOD_Pyr_redox Member 20.7 1.2E+02 0.0026 27.0 3.7 35 878-912 52-86 (90)
391 PF00448 SRP54: SRP54-type pro 20.6 1.6E+02 0.0034 31.0 5.1 55 537-591 84-142 (196)
392 PHA03333 putative ATPase subun 20.4 8.1E+02 0.017 31.1 11.5 41 533-575 291-332 (752)
393 TIGR02760 TraI_TIGR conjugativ 20.4 1E+03 0.023 34.3 14.2 44 296-344 426-469 (1960)
394 TIGR01547 phage_term_2 phage t 20.2 3E+02 0.0065 32.1 7.9 38 537-576 102-142 (396)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-103 Score=854.42 Aligned_cols=575 Identities=41% Similarity=0.688 Sum_probs=480.6
Q ss_pred cCCCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccC
Q 001680 288 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL 367 (1032)
Q Consensus 288 ~~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1032)
...+|.++ -++|+|||+++++|+..+|.+. ..|||||||||+|||||+|||++..
T Consensus 174 ~aeqP~dl-ii~LL~fQkE~l~Wl~~QE~Ss--~~GGiLADEMGMGKTIQtIaLllae---------------------- 228 (791)
T KOG1002|consen 174 RAEQPDDL-IIPLLPFQKEGLAWLTSQEESS--VAGGILADEMGMGKTIQTIALLLAE---------------------- 228 (791)
T ss_pred cccCcccc-eecchhhhHHHHHHHHHhhhhh--hccceehhhhccchHHHHHHHHHhc----------------------
Confidence 34567664 7899999999999999999875 4899999999999999999999762
Q ss_pred CCCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCC
Q 001680 368 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 447 (1032)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~ 447 (1032)
....+||||||.-.+.||.+||.+|... .+++++|||.+
T Consensus 229 ---------------------------------------~~ra~tLVvaP~VAlmQW~nEI~~~T~g--slkv~~YhG~~ 267 (791)
T KOG1002|consen 229 ---------------------------------------VDRAPTLVVAPTVALMQWKNEIERHTSG--SLKVYIYHGAK 267 (791)
T ss_pred ---------------------------------------cccCCeeEEccHHHHHHHHHHHHHhccC--ceEEEEEeccc
Confidence 1224599999999999999999999873 89999999999
Q ss_pred CCCCccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCccc
Q 001680 448 RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDY 527 (1032)
Q Consensus 448 r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~ 527 (1032)
|.++..++..||||+|||.++.+.+.++. +| |. + | ...+.
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~~--------------~G----fr------------r------K----ngv~k 307 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQD--------------YG----FR------------R------K----NGVDK 307 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhcc--------------cc----cc------------c------c----CCccc
Confidence 99999999999999999999988765421 11 00 0 0 11223
Q ss_pred CCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchh----------
Q 001680 528 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY---------- 597 (1032)
Q Consensus 528 ~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~---------- 597 (1032)
..++||.+.|.|||+||||+||++.+.+++|++.|++.+||||||||+||++.|||+|++||+.+||..+
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~ 387 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASL 387 (791)
T ss_pred ccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred ---------------------HHHHHHhccccccC-----chhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEE
Q 001680 598 ---------------------KSFYSTIKIPISRN-----SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 651 (1032)
Q Consensus 598 ---------------------~~F~~~~~~pi~~~-----~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~ 651 (1032)
-.|.....+||... ...++...+.+++.+|+||||-.-.+ -+.|||+.+.+
T Consensus 388 ~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv~v 464 (791)
T KOG1002|consen 388 DWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIVTV 464 (791)
T ss_pred ceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccceee
Confidence 12334445666443 23456788899999999999865333 25799999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHH
Q 001680 652 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDM 731 (1032)
Q Consensus 652 v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~ 731 (1032)
..--|+.+|..+|+.+...+++.|+.|...|.+..+|++|+.++.||||+++||.|+.-... ..++.+
T Consensus 465 RrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~-----------~n~~~e- 532 (791)
T KOG1002|consen 465 RRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSAN-----------ANLPDE- 532 (791)
T ss_pred ehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhh-----------cCCCcc-
Confidence 99999999999999999999999999999999999999999999999999999999864211 011110
Q ss_pred HHHHHhhhccccccccccCCCCCCccccccCcccchhhhhhhccC--CCCCCCCccccccccccccccccccccccCCCC
Q 001680 732 LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG--DDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDG 809 (1032)
Q Consensus 732 ~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~--~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~ 809 (1032)
..+..+|.+|.|+.++++++.|.|.||.-|+.+|+.+ +.+...||.|...+..+.. ...+..
T Consensus 533 --------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls--e~alek------ 596 (791)
T KOG1002|consen 533 --------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS--EPALEK------ 596 (791)
T ss_pred --------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc--chhhhh------
Confidence 1256789999999999999999999999999998753 2222444467776655421 111100
Q ss_pred CCCCCCCcccc----ccCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEec
Q 001680 810 GGSPTDSPFAD----KSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQ 885 (1032)
Q Consensus 810 ~~~~~~~~~~~----~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq 885 (1032)
.....+.. ..+.++.+..|+|+++|.+.|.-+.+.+. ..|.|||||
T Consensus 597 ---~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~---------------------------t~KsIVFSQ 646 (791)
T KOG1002|consen 597 ---TDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDR---------------------------TAKSIVFSQ 646 (791)
T ss_pred ---cchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHccc---------------------------chhhhhHHH
Confidence 00000111 12344567889999999999998887654 449999999
Q ss_pred cHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHH
Q 001680 886 WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQ 965 (1032)
Q Consensus 886 f~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~Q 965 (1032)
|++|||+|...|.+.|+..+.+.|+|+++.|...|+.|.++++++|||+|++|||+.|||+.|++|++|||||||+++-|
T Consensus 647 FTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Q 726 (791)
T KOG1002|consen 647 FTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQ 726 (791)
T ss_pred HHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001680 966 AVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 1031 (1032)
Q Consensus 966 AigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~lt~~dl~~Lf~ 1031 (1032)
|.+|+|||||.|||.|.+|++++|||++|+++|++|..|+++.+|+++ ....+||.+|+++||.
T Consensus 727 a~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde--~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 727 AQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDE--EAISKLTEEDMQFLFN 790 (791)
T ss_pred hhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcH--HHHHhcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999864 3457999999999995
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-88 Score=766.47 Aligned_cols=544 Identities=39% Similarity=0.643 Sum_probs=433.2
Q ss_pred CCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCC
Q 001680 290 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 369 (1032)
Q Consensus 290 ~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (1032)
+-|.+ +.+.|.|||+.|+.||+.+|... +.|||||||||||||+++|++|+.++........
T Consensus 317 e~P~g-~~v~LmpHQkaal~Wl~wRE~q~--~~GGILaddmGLGKTlsmislil~qK~~~~~~~~--------------- 378 (901)
T KOG4439|consen 317 ETPDG-LKVELMPHQKAALRWLLWRESQP--PSGGILADDMGLGKTLSMISLILHQKAARKAREK--------------- 378 (901)
T ss_pred CCCCc-ceeecchhhhhhhhhhcccccCC--CCCcccccccccccchHHHHHHHHHHHHHHhhcc---------------
Confidence 34555 58999999999999999999864 5899999999999999999999987654110000
Q ss_pred CCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCC-C
Q 001680 370 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-R 448 (1032)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~-r 448 (1032)
....+.+||||||+||+.||..|+++.+... .|+|++|||.+ |
T Consensus 379 -----------------------------------~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n-~LsV~~~HG~n~r 422 (901)
T KOG4439|consen 379 -----------------------------------KGESASKTLIICPASLIHQWEAEVARRLEQN-ALSVYLYHGPNKR 422 (901)
T ss_pred -----------------------------------cccccCCeEEeCcHHHHHHHHHHHHHHHhhc-ceEEEEecCCccc
Confidence 0011124999999999999999999998765 89999999999 6
Q ss_pred CCCccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccC
Q 001680 449 TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 528 (1032)
Q Consensus 449 ~~~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~ 528 (1032)
......+.+||||||||..+.+.... +.. ....
T Consensus 423 ~i~~~~L~~YDvViTTY~lva~~~~~-------e~~----------------------------------------~~~~ 455 (901)
T KOG4439|consen 423 EISAKELRKYDVVITTYNLVANKPDD-------ELE----------------------------------------EGKN 455 (901)
T ss_pred cCCHHHHhhcceEEEeeeccccCCch-------hhh----------------------------------------cccC
Confidence 77788999999999999998872111 000 0113
Q ss_pred CCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhcccc
Q 001680 529 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI 608 (1032)
Q Consensus 529 ~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~pi 608 (1032)
.+||.++.|.|||+||||.|||++|+.+.|+|.|++..|||||||||||++.|+|+|++||+..||++++.|.+.+..+
T Consensus 456 ~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~- 534 (901)
T KOG4439|consen 456 SSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNM- 534 (901)
T ss_pred ccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCc-
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccCchhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHh--------
Q 001680 609 SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD-------- 680 (1032)
Q Consensus 609 ~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~-------- 680 (1032)
...+..++.-+.++.||||||.....+.+++.||++..+++.++|+..|...|+-+.+.++..+..++.
T Consensus 535 ---s~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~ 611 (901)
T KOG4439|consen 535 ---SKGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNND 611 (901)
T ss_pred ---cccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 334567788888999999999998888899999999999999999999999999999988888766421
Q ss_pred ----------------------------cCCCcchHHHHHHHHHHHHhhcCcccccccccc-ccc--ccchHHHhhcCCh
Q 001680 681 ----------------------------AGTVNQNYANILLMLLRLRQACDHPLLVKEYDF-DSV--GKISGEMAKRLPR 729 (1032)
Q Consensus 681 ----------------------------~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~-~~~--~~~~~e~~~~l~~ 729 (1032)
.|...+....||.+|+||||+||||.+.+.... +.. .....+..+.+..
T Consensus 612 ~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~ 691 (901)
T KOG4439|consen 612 GGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEE 691 (901)
T ss_pred cCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhh
Confidence 122233456799999999999999977654221 111 0011111111111
Q ss_pred HHHHHHHhhhccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCC
Q 001680 730 DMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDG 809 (1032)
Q Consensus 730 ~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~ 809 (1032)
+. +..++... .|.|..- .|.. .
T Consensus 692 ~~----l~el~k~~--------------~T~~~~D--------------------~~ed-~------------------- 713 (901)
T KOG4439|consen 692 DN----LAELEKND--------------ETDCSDD--------------------NCED-L------------------- 713 (901)
T ss_pred hH----HHhhhhcc--------------ccccccc--------------------cccc-c-------------------
Confidence 11 11111110 0111000 0100 0
Q ss_pred CCCCCCCccccccCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHH
Q 001680 810 GGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRM 889 (1032)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ 889 (1032)
+.. -....++..+.|.|+..+++++..+.... .+|+||.|||+++
T Consensus 714 ------p~~-~~~q~Fe~~r~S~Ki~~~l~~le~i~~~s----------------------------keK~viVSQwtsv 758 (901)
T KOG4439|consen 714 ------PTA-FPDQAFEPDRPSCKIAMVLEILETILTSS----------------------------KEKVVIVSQWTSV 758 (901)
T ss_pred ------ccc-chhhhcccccchhHHHHHHHHHHHHhhcc----------------------------cceeeehhHHHHH
Confidence 000 00112444568999999999999883221 3499999999999
Q ss_pred HHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCc-cccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhH
Q 001680 890 LDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVD 968 (1032)
Q Consensus 890 ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~-~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAig 968 (1032)
|++++..|.+.|..|..++|....++|+.+|+.||... ..+|||+|+.|||+||||+.|||+|++|++|||+.|+||.+
T Consensus 759 Lniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcD 838 (901)
T KOG4439|consen 759 LNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACD 838 (901)
T ss_pred HHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHH
Confidence 99999999999999999999999999999999999754 59999999999999999999999999999999999999999
Q ss_pred hhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhcC
Q 001680 969 RAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1032 (1032)
Q Consensus 969 Ri~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~lt~~dl~~Lf~~ 1032 (1032)
||+|+||+|+|+||||+++||||+||..+|+.|.+++..++.+... .....||..||+.||++
T Consensus 839 RIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~t-r~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 839 RIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSAT-RKMNKLTLADLKKLFGL 901 (901)
T ss_pred HHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccc-cccccccHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999974322 24688999999999985
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.1e-87 Score=765.60 Aligned_cols=459 Identities=31% Similarity=0.511 Sum_probs=402.8
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCC
Q 001680 291 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 370 (1032)
Q Consensus 291 ~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1032)
.|..+....||+||.+||.||+++...+ .+||||||||||||+|+||++.+.+..
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~eng---ingILaDEMGLGKTlQtIs~l~yl~~~---------------------- 213 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENG---INGILADEMGLGKTLQTISLLGYLKGR---------------------- 213 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcC---cccEeehhcccchHHHHHHHHHHHHHh----------------------
Confidence 5767766899999999999999987654 569999999999999999999987653
Q ss_pred CCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC
Q 001680 371 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 450 (1032)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~ 450 (1032)
+.-.+|.||+||.|++.||.+||.+|+| .+++++|+|.+..+
T Consensus 214 -----------------------------------~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~eR 255 (971)
T KOG0385|consen 214 -----------------------------------KGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEER 255 (971)
T ss_pred -----------------------------------cCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHHH
Confidence 1334779999999999999999999999 89999999987443
Q ss_pred -----CccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCc
Q 001680 451 -----DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 525 (1032)
Q Consensus 451 -----~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~ 525 (1032)
+...-..+||+||||+++.++-
T Consensus 256 ~~~~r~~~~~~~fdV~iTsYEi~i~dk----------------------------------------------------- 282 (971)
T KOG0385|consen 256 AALRRDIMLPGRFDVCITSYEIAIKDK----------------------------------------------------- 282 (971)
T ss_pred HHHHHHhhccCCCceEeehHHHHHhhH-----------------------------------------------------
Confidence 2223358999999999987641
Q ss_pred ccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhc
Q 001680 526 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIK 605 (1032)
Q Consensus 526 ~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~ 605 (1032)
..|..+.|.++||||||+|||.+|..++.++.+.+.+|++|||||+||++.|||+|++||.|+.|.+.+.|..+|.
T Consensus 283 ----~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~ 358 (971)
T KOG0385|consen 283 ----SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFD 358 (971)
T ss_pred ----HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHc
Confidence 2378899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCchhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 001680 606 IPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVN 685 (1032)
Q Consensus 606 ~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~ 685 (1032)
.....+......+|+.+|+||+|||.|.+|.. .|||+.+..+++.|++.|++.|..+...-...+ ...+..
T Consensus 359 ~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~---n~~~~~- 429 (971)
T KOG0385|consen 359 FTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDLDAL---NGEGKG- 429 (971)
T ss_pred ccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcchhh---cccccc-
Confidence 87777777789999999999999999999986 799999999999999999999999866433322 222222
Q ss_pred chHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccccccCccc
Q 001680 686 QNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVF 765 (1032)
Q Consensus 686 ~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~f 765 (1032)
....++.+++.||++|+||.|+.+..... | .+.
T Consensus 430 -~k~kL~NI~mQLRKccnHPYLF~g~ePg~----------------------------------------p-ytt----- 462 (971)
T KOG0385|consen 430 -EKTKLQNIMMQLRKCCNHPYLFDGAEPGP----------------------------------------P-YTT----- 462 (971)
T ss_pred -hhhHHHHHHHHHHHhcCCccccCCCCCCC----------------------------------------C-CCc-----
Confidence 35678889999999999999987522100 0 000
Q ss_pred chhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHHhh
Q 001680 766 CYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQC 845 (1032)
Q Consensus 766 C~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~ 845 (1032)
.......|+|+..|-.+|..+.
T Consensus 463 ----------------------------------------------------------dehLv~nSGKm~vLDkLL~~Lk 484 (971)
T KOG0385|consen 463 ----------------------------------------------------------DEHLVTNSGKMLVLDKLLPKLK 484 (971)
T ss_pred ----------------------------------------------------------chHHHhcCcceehHHHHHHHHH
Confidence 0011235889999999999998
Q ss_pred hcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhcc
Q 001680 846 ELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 925 (1032)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~ 925 (1032)
+.++ |||||||++.|||+|+.++.-+++.|+||||+++.++|..+|+.|+.
T Consensus 485 ~~Gh-----------------------------RVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~ 535 (971)
T KOG0385|consen 485 EQGH-----------------------------RVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNA 535 (971)
T ss_pred hCCC-----------------------------eEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCC
Confidence 8887 99999999999999999999999999999999999999999999998
Q ss_pred Cc-cccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 001680 926 DR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKM 1004 (1032)
Q Consensus 926 ~~-~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l 1004 (1032)
.+ +..|||+||+|||.||||+.|+.||+||..|||....||.+|||||||+++|.||||++++||||+|+++...|.+|
T Consensus 536 ~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~L 615 (971)
T KOG0385|consen 536 PPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRL 615 (971)
T ss_pred CCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhch
Confidence 65 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC
Q 001680 1005 VASAFGED 1012 (1032)
Q Consensus 1005 ~~~~~g~~ 1012 (1032)
-.-+++.+
T Consensus 616 d~~VIq~g 623 (971)
T KOG0385|consen 616 DKLVIQQG 623 (971)
T ss_pred hhhhhccC
Confidence 99999875
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.9e-86 Score=754.73 Aligned_cols=478 Identities=30% Similarity=0.474 Sum_probs=404.2
Q ss_pred ccCCCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhcccccccccc
Q 001680 287 VEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALN 366 (1032)
Q Consensus 287 ~~~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1032)
..+.+|..+ ...|+|||++||.||+..... ..|||||||||||||||+|+++......
T Consensus 194 ~~~~vPg~I-~~~Lf~yQreGV~WL~~L~~q---~~GGILgDeMGLGKTIQiisFLaaL~~S------------------ 251 (923)
T KOG0387|consen 194 GGFKVPGFI-WSKLFPYQREGVQWLWELYCQ---RAGGILGDEMGLGKTIQIISFLAALHHS------------------ 251 (923)
T ss_pred ccccccHHH-HHHhhHHHHHHHHHHHHHHhc---cCCCeecccccCccchhHHHHHHHHhhc------------------
Confidence 346677665 557999999999999988764 4799999999999999999999875432
Q ss_pred CCCCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCC
Q 001680 367 LDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG 446 (1032)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~ 446 (1032)
..-.+|+|||||++|+.||.+|+.+|+| .++|.+|||.
T Consensus 252 ---------------------------------------~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t 289 (923)
T KOG0387|consen 252 ---------------------------------------GKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGT 289 (923)
T ss_pred ---------------------------------------ccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecC
Confidence 0123679999999999999999999999 7999999998
Q ss_pred CCCC---------------CccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccc
Q 001680 447 SRTK---------------DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSK 511 (1032)
Q Consensus 447 ~r~~---------------~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~ 511 (1032)
.... .........|+||||+.++..-
T Consensus 290 ~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~--------------------------------------- 330 (923)
T KOG0387|consen 290 GSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG--------------------------------------- 330 (923)
T ss_pred CcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC---------------------------------------
Confidence 7631 0122345578999999987531
Q ss_pred cccCCCCCCCCCCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHcc
Q 001680 512 RGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 591 (1032)
Q Consensus 512 k~~~~~~~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p 591 (1032)
.++..+.|++||+||+|+|||++|+.+.+|+.|++.+|++||||||||++.|||+||+|+.|
T Consensus 331 ------------------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~P 392 (923)
T KOG0387|consen 331 ------------------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFP 392 (923)
T ss_pred ------------------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccC
Confidence 23788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHhccccccCch------------hHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHH
Q 001680 592 DPYAVYKSFYSTIKIPISRNSL------------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKE 659 (1032)
Q Consensus 592 ~~~~~~~~F~~~~~~pi~~~~~------------~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~ 659 (1032)
+.+++...|...|..||..+.. .....|+.++.|++|||+|.+|.. ..||.|.+.+++|.||+.
T Consensus 393 G~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 393 GKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred CcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEeccHH
Confidence 9999999999999999977643 223568999999999999999975 589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhh
Q 001680 660 EWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRL 739 (1032)
Q Consensus 660 er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~l 739 (1032)
|+.+|+.+.+...- ..... | ..++|..+.-||.+||||.|+.........
T Consensus 469 QR~~Y~~fl~s~~v--~~i~n-g-----~~~~l~Gi~iLrkICnHPdll~~~~~~~~~---------------------- 518 (923)
T KOG0387|consen 469 QRRLYQRFLNSSEV--NKILN-G-----KRNCLSGIDILRKICNHPDLLDRRDEDEKQ---------------------- 518 (923)
T ss_pred HHHHHHHHhhhHHH--HHHHc-C-----CccceechHHHHhhcCCcccccCccccccc----------------------
Confidence 99999998765322 22221 1 235677788899999999987642100000
Q ss_pred ccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccc
Q 001680 740 ETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFA 819 (1032)
Q Consensus 740 e~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~ 819 (1032)
-| +
T Consensus 519 -----------------------------------------~~-------------------------D----------- 521 (923)
T KOG0387|consen 519 -----------------------------------------GP-------------------------D----------- 521 (923)
T ss_pred -----------------------------------------CC-------------------------C-----------
Confidence 00 0
Q ss_pred cccCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhh-
Q 001680 820 DKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLN- 898 (1032)
Q Consensus 820 ~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~- 898 (1032)
....+..|.|++.+.++|......+. |+|+|+|...||++|+..|.
T Consensus 522 ----~~g~~k~sGKm~vl~~ll~~W~kqg~-----------------------------rvllFsqs~~mLdilE~fL~~ 568 (923)
T KOG0387|consen 522 ----YEGDPKRSGKMKVLAKLLKDWKKQGD-----------------------------RVLLFSQSRQMLDILESFLRR 568 (923)
T ss_pred ----cCCChhhcchHHHHHHHHHHHhhCCC-----------------------------EEEEehhHHHHHHHHHHHHHh
Confidence 00123368999999999999888876 99999999999999999999
Q ss_pred hcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCccc
Q 001680 899 QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 978 (1032)
Q Consensus 899 ~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 978 (1032)
..|+.|+++||.++.+.|+.+|++||++..+.|||++|++||.|||||.||+||+|||.|||++..||-.|+|||||+|+
T Consensus 569 ~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkd 648 (923)
T KOG0387|consen 569 AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKD 648 (923)
T ss_pred cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhcC
Q 001680 979 VTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1032 (1032)
Q Consensus 979 V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~lt~~dl~~Lf~~ 1032 (1032)
|.||||++.|||||+||.+|--|..|.+.++..... ..-+...||.+||.+
T Consensus 649 V~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q---~RfF~~~dl~dLFsl 699 (923)
T KOG0387|consen 649 VVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQ---RRFFKGNDLHDLFSL 699 (923)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHH---hhhcccccHHHHhCC
Confidence 999999999999999999999999999999965321 234566778888753
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=8.6e-85 Score=768.69 Aligned_cols=525 Identities=31% Similarity=0.491 Sum_probs=422.7
Q ss_pred HHHHHhhcCCC-Cc-cCCCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccc
Q 001680 275 YQAALEDLNQP-KV-EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKS 352 (1032)
Q Consensus 275 ~~~~~~~l~~~-~~-~~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~ 352 (1032)
+..+++.+-.+ +. ++.+|..+ +..||.||.+||.|+.-..+-.+| ||||||||||||+|+|++++......
T Consensus 950 erkFLeqlldpski~~y~Ip~pI-~a~LRkYQqEGVnWLaFLnky~LH---GILcDDMGLGKTLQticilAsd~y~r--- 1022 (1549)
T KOG0392|consen 950 ERKFLEQLLDPSKIPEYKIPVPI-SAKLRKYQQEGVNWLAFLNKYKLH---GILCDDMGLGKTLQTICILASDHYKR--- 1022 (1549)
T ss_pred HHHHHHHhcCcccCCccccccch-hHHHHHHHHhccHHHHHHHHhccc---ceeeccccccHHHHHHHHHHHHHHhh---
Confidence 44555555443 33 36677665 678999999999999887765555 99999999999999999998754430
Q ss_pred hhhhccccccccccCCCCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhC
Q 001680 353 KTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKV 432 (1032)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~ 432 (1032)
+ .....-...|.|||||.+|..+|+.|+.+|+
T Consensus 1023 --------~----------------------------------------s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 1023 --------R----------------------------------------SESSEFNRLPSLIVCPSTLTGHWKSEVKKFF 1054 (1549)
T ss_pred --------c----------------------------------------ccchhhccCCeEEECCchhhhHHHHHHHHhc
Confidence 0 0000122345899999999999999999999
Q ss_pred CCCCCcEEEEEeCCCC--CCCccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhcccccc
Q 001680 433 PDKAALSVLIYHGGSR--TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVS 510 (1032)
Q Consensus 433 ~~~~~l~vlv~~G~~r--~~~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~ 510 (1032)
| .++|+.|-|... ........+++|+||||+++++++..
T Consensus 1055 p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~------------------------------------ 1095 (1549)
T KOG0392|consen 1055 P---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY------------------------------------ 1095 (1549)
T ss_pred c---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH------------------------------------
Confidence 8 699999998763 33456677899999999999987532
Q ss_pred ccccCCCCCCCCCCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHc
Q 001680 511 KRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 590 (1032)
Q Consensus 511 ~k~~~~~~~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~ 590 (1032)
|.++.|.++|+||+|-|||..++.+++++.|++.+|++||||||||++.||||+|+||+
T Consensus 1096 ---------------------l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLM 1154 (1549)
T KOG0392|consen 1096 ---------------------LIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLM 1154 (1549)
T ss_pred ---------------------HHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhc
Confidence 67788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHhcccccc--C----------chhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCH
Q 001680 591 YDPYAVYKSFYSTIKIPISR--N----------SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 658 (1032)
Q Consensus 591 p~~~~~~~~F~~~~~~pi~~--~----------~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~ 658 (1032)
|+.++..+.|..+|.+||-. + ..-+++.|++.+-|||+||+|++|+. +||||.++.++|+|++
T Consensus 1155 PGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQDyyCeLs~ 1229 (1549)
T KOG0392|consen 1155 PGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQDYYCELSP 1229 (1549)
T ss_pred ccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhheeeccCH
Confidence 99999999999999999832 1 11356788999999999999999987 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcch--HHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHH
Q 001680 659 EEWAFYKKLESDSLKKFKAFADAGTVNQN--YANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 736 (1032)
Q Consensus 659 ~er~lY~~l~~~~~~~~~~~~~~g~~~~~--~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l 736 (1032)
.|+++|+.+............+.+..... ..++++.|..||+.|+||.|+....-... .
T Consensus 1230 lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~l----a--------------- 1290 (1549)
T KOG0392|consen 1230 LQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDL----A--------------- 1290 (1549)
T ss_pred HHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchH----H---------------
Confidence 99999999877633222222222222222 78999999999999999999864210000 0
Q ss_pred hhhccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCC
Q 001680 737 SRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDS 816 (1032)
Q Consensus 737 ~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~ 816 (1032)
.++..|+|.-
T Consensus 1291 -------------------~i~~~l~~~~--------------------------------------------------- 1300 (1549)
T KOG0392|consen 1291 -------------------AIVSHLAHFN--------------------------------------------------- 1300 (1549)
T ss_pred -------------------HHHHHHHHhh---------------------------------------------------
Confidence 0111111100
Q ss_pred ccccccCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHH
Q 001680 817 PFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENS 896 (1032)
Q Consensus 817 ~~~~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~ 896 (1032)
........++|+.+|.++|.+.--... ....-..++..+.+|+||||||.+|+|+++.-
T Consensus 1301 ------~~LHdi~hspKl~AL~qLL~eCGig~~---------------~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1301 ------SSLHDIQHSPKLSALKQLLSECGIGNN---------------SDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred ------hhHHHhhhchhHHHHHHHHHHhCCCCC---------------CcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 000111268999999999987542211 01111112224567999999999999999999
Q ss_pred hhhc---CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhcc
Q 001680 897 LNQH---CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI 973 (1032)
Q Consensus 897 L~~~---gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~Ri 973 (1032)
|-+. .+.|.|+||+.++.+|++++++||+||.+.|||++|.+||.|||||.|++|||++-.|||+...||+||+|||
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRI 1439 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRI 1439 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhh
Confidence 8776 5778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001680 974 GQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 1031 (1032)
Q Consensus 974 GQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~lt~~dl~~Lf~ 1031 (1032)
||+|.|.|||||++||+||+|+.+|.-|-..++.+++.+. .....+..++|.+||.
T Consensus 1440 GQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN--asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1440 GQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN--ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred cCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--ccccccCHHHHHHHhc
Confidence 9999999999999999999999999999999999998764 3456789999999996
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-83 Score=736.29 Aligned_cols=488 Identities=31% Similarity=0.494 Sum_probs=391.7
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCc
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
.++|.|||+.||.|+.-..+..+ .||||||||||||+|+||++++++..
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLkq~---------------------------- 445 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLKQI---------------------------- 445 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHHHc----------------------------
Confidence 45799999999999988877654 48999999999999999999987654
Q ss_pred CcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-----
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD----- 451 (1032)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~----- 451 (1032)
+..+|.|||||+|.+.||.+||.+||| .++|..|||+...+.
T Consensus 446 ------------------------------g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 446 ------------------------------GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ------------------------------CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 335779999999999999999999999 899999999873321
Q ss_pred -ccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCC
Q 001680 452 -PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCG 530 (1032)
Q Consensus 452 -~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~ 530 (1032)
...-..|||++|||..+...- .+..
T Consensus 493 i~~~~~~ydVllTTY~la~~~k------------------------------------------------------dDRs 518 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASSK------------------------------------------------------DDRS 518 (941)
T ss_pred HhccCCCccEEEEEeecccCCh------------------------------------------------------HHHH
Confidence 122248999999999886421 1223
Q ss_pred CCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchh-HHHHHHhccccc
Q 001680 531 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY-KSFYSTIKIPIS 609 (1032)
Q Consensus 531 ~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~-~~F~~~~~~pi~ 609 (1032)
.|....|++||.||+|++||..|.+++.+..++|.+|++|||||+||++.||++|+.|+.|..|... +.+...|..--.
T Consensus 519 flk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~ 598 (941)
T KOG0389|consen 519 FLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT 598 (941)
T ss_pred HHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC
Confidence 4778889999999999999999999999999999999999999999999999999999999998743 444444432211
Q ss_pred -cC-------chhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 001680 610 -RN-------SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADA 681 (1032)
Q Consensus 610 -~~-------~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~ 681 (1032)
.+ ...++.+...+++||+|||.|.+|++ .||||+.++.+|+|+..|+.+|..+.+............
T Consensus 599 ~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n 673 (941)
T KOG0389|consen 599 SDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN 673 (941)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc
Confidence 11 12456788899999999999999997 899999999999999999999999877653222111111
Q ss_pred CCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChH---------HHHH---HHhhhcccccccccc
Q 001680 682 GTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRD---------MLID---LLSRLETSSAICCVC 749 (1032)
Q Consensus 682 g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~---------~~~~---~l~~le~~~~~C~ic 749 (1032)
... .+ -..+++||++++||.|+..+..+..- ..+++.+-.+ .+.+ ++..++
T Consensus 674 -s~~---~~-~~vlmqlRK~AnHPLL~R~~Y~de~L---~~mak~il~e~ay~~~n~qyIfEDm~~msDfe--------- 736 (941)
T KOG0389|consen 674 -SEL---KS-GNVLMQLRKAANHPLLFRSIYTDEKL---RKMAKRILNEPAYKKANEQYIFEDMEVMSDFE--------- 736 (941)
T ss_pred -ccc---cc-chHHHHHHHHhcChhHHHHhccHHHH---HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHH---------
Confidence 001 11 34789999999999999876554321 1222222111 1111 111111
Q ss_pred CCCCCCccccccCcccchhh--hhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCc
Q 001680 750 SDPPEDSVVTMCGHVFCYQC--ASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDN 827 (1032)
Q Consensus 750 ~d~~~~~vvt~CgH~fC~~C--i~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1032)
-|..|.+. +..+ ....+.
T Consensus 737 ------------lHqLc~~f~~~~~f------------------------------------------------~L~d~~ 756 (941)
T KOG0389|consen 737 ------------LHQLCCQFRHLSKF------------------------------------------------QLKDDL 756 (941)
T ss_pred ------------HHHHHHhcCCCccc------------------------------------------------ccCCch
Confidence 23334321 1111 011223
Q ss_pred cccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEee
Q 001680 828 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRL 907 (1032)
Q Consensus 828 ~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l 907 (1032)
+..|+|++.|-.+|.++...|+ |||||||||.|||+|+..|...++.|+|+
T Consensus 757 ~mdSgK~r~L~~LLp~~k~~G~-----------------------------RVLiFSQFTqmLDILE~~L~~l~~~ylRL 807 (941)
T KOG0389|consen 757 WMDSGKCRKLKELLPKIKKKGD-----------------------------RVLIFSQFTQMLDILEVVLDTLGYKYLRL 807 (941)
T ss_pred hhhhhhHhHHHHHHHHHhhcCC-----------------------------EEEEeeHHHHHHHHHHHHHHhcCceEEee
Confidence 4579999999999999988876 99999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 908 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 908 ~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
||+|....|+.+|++|+.+.++.|||+||+|||.||||++||+||++|..+||....||.+||||+||+|+|+|||||++
T Consensus 808 DGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk 887 (941)
T KOG0389|consen 808 DGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITK 887 (941)
T ss_pred cCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCC
Q 001680 988 DTVEDRILKLQDDKRKMVASAFGEDQ 1013 (1032)
Q Consensus 988 ~TiEe~I~~lq~~K~~l~~~~~g~~~ 1013 (1032)
+||||.|+++.+.|..|-..+-+.++
T Consensus 888 ~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 888 STIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred CcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999988777765543
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1e-81 Score=778.08 Aligned_cols=474 Identities=29% Similarity=0.481 Sum_probs=400.3
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCC
Q 001680 291 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 370 (1032)
Q Consensus 291 ~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1032)
+|.. +...|||||++||+||+..... +.|||||||||||||+|+|+++...+..
T Consensus 162 qP~~-i~~~Lr~YQleGlnWLi~l~~~---g~gGILADEMGLGKTlQaIalL~~L~~~---------------------- 215 (1033)
T PLN03142 162 QPSC-IKGKMRDYQLAGLNWLIRLYEN---GINGILADEMGLGKTLQTISLLGYLHEY---------------------- 215 (1033)
T ss_pred CChH-hccchHHHHHHHHHHHHHHHhc---CCCEEEEeCCCccHHHHHHHHHHHHHHh----------------------
Confidence 3544 4578999999999999987643 4789999999999999999999775432
Q ss_pred CCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC
Q 001680 371 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 450 (1032)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~ 450 (1032)
....+++|||||++++.||.+||.+|+| .+++++|+|....+
T Consensus 216 -----------------------------------~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~eR 257 (1033)
T PLN03142 216 -----------------------------------RGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEER 257 (1033)
T ss_pred -----------------------------------cCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHHH
Confidence 1234679999999999999999999997 78999999986433
Q ss_pred Cc-----cccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCc
Q 001680 451 DP-----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 525 (1032)
Q Consensus 451 ~~-----~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~ 525 (1032)
.. .....+|||||||+++.++.
T Consensus 258 ~~~~~~~~~~~~~dVvITSYe~l~~e~----------------------------------------------------- 284 (1033)
T PLN03142 258 AHQREELLVAGKFDVCVTSFEMAIKEK----------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHhcccCCCcceecHHHHHHHH-----------------------------------------------------
Confidence 11 12357999999999987641
Q ss_pred ccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhc
Q 001680 526 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIK 605 (1032)
Q Consensus 526 ~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~ 605 (1032)
..|..+.|++|||||||+|||..|+++++++.+++.+||+|||||++|++.|||++++||.|+.|++...|...|.
T Consensus 285 ----~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~ 360 (1033)
T PLN03142 285 ----TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ 360 (1033)
T ss_pred ----HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHc
Confidence 1266788999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCchhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 001680 606 IPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVN 685 (1032)
Q Consensus 606 ~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~ 685 (1032)
.+...........|+.++++|++||+|.+|.. .|||+.+.++.|.|++.|+++|..+.......+. .+
T Consensus 361 ~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~----~g--- 428 (1033)
T PLN03142 361 ISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN----AG--- 428 (1033)
T ss_pred cccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh----cc---
Confidence 76555556678899999999999999999875 7999999999999999999999998765443332 22
Q ss_pred chHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccccccCccc
Q 001680 686 QNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVF 765 (1032)
Q Consensus 686 ~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~f 765 (1032)
.....++..+++||++|+||.|+....... +..+
T Consensus 429 ~~~~~LlnilmqLRk~cnHP~L~~~~ep~~----------------------------------------~~~~------ 462 (1033)
T PLN03142 429 GERKRLLNIAMQLRKCCNHPYLFQGAEPGP----------------------------------------PYTT------ 462 (1033)
T ss_pred ccHHHHHHHHHHHHHHhCCHHhhhcccccC----------------------------------------cccc------
Confidence 133567889999999999998864311000 0000
Q ss_pred chhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHHhh
Q 001680 766 CYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQC 845 (1032)
Q Consensus 766 C~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~ 845 (1032)
.......|+|+..|..+|..+.
T Consensus 463 ----------------------------------------------------------~e~lie~SgKl~lLdkLL~~Lk 484 (1033)
T PLN03142 463 ----------------------------------------------------------GEHLVENSGKMVLLDKLLPKLK 484 (1033)
T ss_pred ----------------------------------------------------------hhHHhhhhhHHHHHHHHHHHHH
Confidence 0000124789999999998887
Q ss_pred hcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhcc
Q 001680 846 ELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 925 (1032)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~ 925 (1032)
..+. ||||||||+.++++|+..|...|+.|++|+|+++..+|+++|++|++
T Consensus 485 ~~g~-----------------------------KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~ 535 (1033)
T PLN03142 485 ERDS-----------------------------RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNK 535 (1033)
T ss_pred hcCC-----------------------------eEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhcc
Confidence 6655 99999999999999999999999999999999999999999999997
Q ss_pred Cc-cccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 001680 926 DR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKM 1004 (1032)
Q Consensus 926 ~~-~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l 1004 (1032)
++ ...|||+|++|||+||||+.|++||+||+||||+.+.||+||+|||||+++|+||+|+++|||||+|++++..|..+
T Consensus 536 ~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 536 PGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred ccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 54 56799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001680 1005 VASAFGEDQGGGTASRLTVEDLRYLFM 1031 (1032)
Q Consensus 1005 ~~~~~g~~~~~~~~~~lt~~dl~~Lf~ 1031 (1032)
...+++.+.... ...++.+||..||.
T Consensus 616 d~~Vi~~g~~~~-~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 616 DALVIQQGRLAE-QKTVNKDELLQMVR 641 (1033)
T ss_pred HHHHHhcCcccc-cccCCHHHHHHHHH
Confidence 999997643222 25688999988873
No 8
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-82 Score=759.72 Aligned_cols=567 Identities=46% Similarity=0.729 Sum_probs=490.0
Q ss_pred hHHHHHHHHhhcCCCCccCCCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccc
Q 001680 271 ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 350 (1032)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~ 350 (1032)
.+.+|..+...+.+...+...|.+.+..+ |++...||+..+.....++||||||+||+|||+++|++++..+....
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~ 181 (674)
T KOG1001|consen 106 NLPIFKAAKWEIILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK 181 (674)
T ss_pred cchhhhhhhhhhhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc
Confidence 44566666666655555556666644554 77777788777777777899999999999999999999988554310
Q ss_pred cchhhhccccccccccCCCCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHH
Q 001680 351 KSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELED 430 (1032)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k 430 (1032)
+ .......+.+|||||.+++.||..|+ .
T Consensus 182 ------------~---------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-e 209 (674)
T KOG1001|consen 182 ------------E---------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-E 209 (674)
T ss_pred ------------c---------------------------------------hhhccccCceeEecchHHHHHHHHHH-h
Confidence 0 00124567899999999999999999 5
Q ss_pred hCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhcccccc
Q 001680 431 KVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVS 510 (1032)
Q Consensus 431 ~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~ 510 (1032)
.......+.+++||| |.++...+..||||||||.++.+
T Consensus 210 k~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~---------------------------------------- 247 (674)
T KOG1001|consen 210 KVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN---------------------------------------- 247 (674)
T ss_pred ccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc----------------------------------------
Confidence 556666999999999 88899999999999999999874
Q ss_pred ccccCCCCCCCCCCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHc
Q 001680 511 KRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 590 (1032)
Q Consensus 511 ~k~~~~~~~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~ 590 (1032)
+++..+.|.|||+||||.|+|++++.+++++.|.+.+||||||||+||+++|+|++++|+.
T Consensus 248 -------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~ 308 (674)
T KOG1001|consen 248 -------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLE 308 (674)
T ss_pred -------------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhh
Confidence 2477899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHHhccccccCc-hhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHH
Q 001680 591 YDPYAVYKSFYSTIKIPISRNS-LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 669 (1032)
Q Consensus 591 p~~~~~~~~F~~~~~~pi~~~~-~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~ 669 (1032)
.+||..+..|...+..|+.+.. ..++..++.+|+.+++||+|....+|.|++.|||+.+.++.++++.+++.+|..+..
T Consensus 309 ~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~ 388 (674)
T KOG1001|consen 309 IHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKA 388 (674)
T ss_pred cCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhh
Confidence 9999999999999999999988 889999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhcccccccccc
Q 001680 670 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVC 749 (1032)
Q Consensus 670 ~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic 749 (1032)
..+.++..+...+++..+|..++..+++|||+|+||.++............. ......+..++..+ ..|.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~-------~~~~~~~i~~l~~~-~~c~ic 460 (674)
T KOG1001|consen 389 NSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSA-------AALIIRLIVDLSVS-HWCHIC 460 (674)
T ss_pred hhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhcccccccc-------chHHHHHHHHHhhc-cccccc
Confidence 9999999999999999999999999999999999999987533222111111 01111145555555 899999
Q ss_pred CCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccc
Q 001680 750 SDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEY 829 (1032)
Q Consensus 750 ~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1032)
.+ ++.++++.|+|.||.+|+...+...... |++.|+..+.....++...+..++.... .
T Consensus 461 ~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l~s~~~~~~~~~~~~-------------------~ 519 (674)
T KOG1001|consen 461 CD-LDSFFITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKLLSANPLPSIINDLL-------------------P 519 (674)
T ss_pred cc-cccceeecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHHhhcccccchhhhcc-------------------c
Confidence 99 8999999999999999999999887766 7779999998888777655544433200 0
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
.|.|+.+++..|..... ++. .|+||||||+.++++++..|...++.+.+++|
T Consensus 520 ~s~ki~~~~~~l~~~~~-------------------------s~~---~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g 571 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEM-------------------------SEQ---PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDG 571 (674)
T ss_pred hhhhhHHHHHHHhhccC-------------------------CCC---CceeeehhHHHHHHHhhhhhhhcccccchhhh
Confidence 68999999999982111 011 19999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCC
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 989 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~T 989 (1032)
.|+...|.+.+..|..++.++|+++|++|||.||||+.|+|||++||||||+.|+|||+|+||+||+++|.|++|++++|
T Consensus 572 ~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dt 651 (674)
T KOG1001|consen 572 EMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDT 651 (674)
T ss_pred hhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 001680 990 VEDRILKLQDDKRKMVASAFGE 1011 (1032)
Q Consensus 990 iEe~I~~lq~~K~~l~~~~~g~ 1011 (1032)
|||||+++|++|+.++..++|+
T Consensus 652 veer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 652 VEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred cHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999986
No 9
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=8.8e-82 Score=732.70 Aligned_cols=579 Identities=31% Similarity=0.481 Sum_probs=425.5
Q ss_pred cCCCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccC
Q 001680 288 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL 367 (1032)
Q Consensus 288 ~~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1032)
...+| .++...||.||+.|+.||....++.+ .||||||||||||||+|+|++++.+.
T Consensus 605 ktpvP-sLLrGqLReYQkiGLdWLatLYeknl---NGILADEmGLGKTIQtISllAhLACe------------------- 661 (1958)
T KOG0391|consen 605 KTPVP-SLLRGQLREYQKIGLDWLATLYEKNL---NGILADEMGLGKTIQTISLLAHLACE------------------- 661 (1958)
T ss_pred ccCch-HHHHHHHHHHHHhhHHHHHHHHHhcc---cceehhhhcccchhHHHHHHHHHHhc-------------------
Confidence 33444 45688999999999999999888654 59999999999999999999886543
Q ss_pred CCCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCC
Q 001680 368 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 447 (1032)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~ 447 (1032)
+...++.|||||++++-||+.||++||| .++++.|+|+.
T Consensus 662 --------------------------------------egnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~ 700 (1958)
T KOG0391|consen 662 --------------------------------------EGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSH 700 (1958)
T ss_pred --------------------------------------ccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCH
Confidence 2556789999999999999999999999 79999999998
Q ss_pred CCCCc-----cccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCC
Q 001680 448 RTKDP-----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 522 (1032)
Q Consensus 448 r~~~~-----~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~ 522 (1032)
+.+.. ..-+-|.|+||||..+..+...
T Consensus 701 kErkeKRqgW~kPnaFHVCItSYklv~qd~~A------------------------------------------------ 732 (1958)
T KOG0391|consen 701 KERKEKRQGWAKPNAFHVCITSYKLVFQDLTA------------------------------------------------ 732 (1958)
T ss_pred HHHHHHhhcccCCCeeEEeehhhHHHHhHHHH------------------------------------------------
Confidence 65432 2235689999999998865321
Q ss_pred CCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHH
Q 001680 523 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYS 602 (1032)
Q Consensus 523 ~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~ 602 (1032)
|.+.+|.++||||||+|||..+++++++..+++.+|++|||||++|++.|||+|++||+|..|.+...|..
T Consensus 733 ---------FkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~ 803 (1958)
T KOG0391|consen 733 ---------FKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKP 803 (1958)
T ss_pred ---------HHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHH
Confidence 55677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccC-------chhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 001680 603 TIKIPISRN-------SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 675 (1032)
Q Consensus 603 ~~~~pi~~~-------~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~ 675 (1032)
+|.+|+... ...-..+|+.+|++|+|||+|.+|.+ .||.|.+++++|.|+..||.+|+.+......+
T Consensus 804 wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TK- 877 (1958)
T KOG0391|consen 804 WFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQPGTK- 877 (1958)
T ss_pred HhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhccchh-
Confidence 999998542 23457899999999999999999987 89999999999999999999999886543221
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccc-----------c---cc-----------------------
Q 001680 676 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDS-----------V---GK----------------------- 718 (1032)
Q Consensus 676 ~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~-----------~---~~----------------------- 718 (1032)
+. -...++.+++.+|++||++|+||.|+....... . ..
T Consensus 878 -et----LkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~ 952 (1958)
T KOG0391|consen 878 -ET----LKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSA 952 (1958)
T ss_pred -hH----hhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCccc
Confidence 11 234578999999999999999997764311000 0 00
Q ss_pred ----------------------ch---------------------------HH---------------------------
Q 001680 719 ----------------------IS---------------------------GE--------------------------- 722 (1032)
Q Consensus 719 ----------------------~~---------------------------~e--------------------------- 722 (1032)
.+ .+
T Consensus 953 vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~ 1032 (1958)
T KOG0391|consen 953 VPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQ 1032 (1958)
T ss_pred ccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcH
Confidence 00 00
Q ss_pred -HhhcC--------------------------------------------------------------------------
Q 001680 723 -MAKRL-------------------------------------------------------------------------- 727 (1032)
Q Consensus 723 -~~~~l-------------------------------------------------------------------------- 727 (1032)
+....
T Consensus 1033 ~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gta 1112 (1958)
T KOG0391|consen 1033 SRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTA 1112 (1958)
T ss_pred hHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchh
Confidence 00000
Q ss_pred ---------------ChHH---HHHHHhhhcc-c--------cccccccCC--------CCCCccccccCcccchhhhhh
Q 001680 728 ---------------PRDM---LIDLLSRLET-S--------SAICCVCSD--------PPEDSVVTMCGHVFCYQCASE 772 (1032)
Q Consensus 728 ---------------~~~~---~~~~l~~le~-~--------~~~C~ic~d--------~~~~~vvt~CgH~fC~~Ci~~ 772 (1032)
..++ +...+.++.. . ..+|.+-.. .+...+++.|- |.+.+..
T Consensus 1113 t~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r---~le~l~~ 1189 (1958)
T KOG0391|consen 1113 TLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCR---CLESLQD 1189 (1958)
T ss_pred hhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHH---HHHHHHH
Confidence 0000 0000011100 0 011221111 00111222221 1111122
Q ss_pred hccC----------CCCCCCCccccccccccccccccccccccCCCCCC-CCCCCccccccCCCCccccchhHHHHHHHH
Q 001680 773 YITG----------DDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGG-SPTDSPFADKSGILDNEYISSKIRTVLDIL 841 (1032)
Q Consensus 773 ~~~~----------~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~SsKl~~LlelL 841 (1032)
++.. ....|-.+.-...+..+.-+....+.......... ....+....-....-..|+..|++.|.-+|
T Consensus 1190 iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLL 1269 (1958)
T KOG0391|consen 1190 IIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILL 1269 (1958)
T ss_pred HHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHH
Confidence 2211 11122211111111111111000111100000000 000000001111223467899999999999
Q ss_pred HHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHH
Q 001680 842 HTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK 921 (1032)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~ 921 (1032)
+++...++ ++|||+|.+.|||+|+.+|..+|+.|+||||+++.++|+.+++
T Consensus 1270 qQLk~egh-----------------------------RvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLme 1320 (1958)
T KOG0391|consen 1270 QQLKSEGH-----------------------------RVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALME 1320 (1958)
T ss_pred HHHHhcCc-----------------------------eEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHH
Confidence 99998887 9999999999999999999999999999999999999999999
Q ss_pred hhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 001680 922 DFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDK 1001 (1032)
Q Consensus 922 ~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K 1001 (1032)
+||.|..+++||+|+++||+|+||+.||.|||||-.|||....||-+|||||||+|+|+|||||.+.||||+|++....|
T Consensus 1321 rFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqK 1400 (1958)
T KOG0391|consen 1321 RFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQK 1400 (1958)
T ss_pred HhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCccCCCCHHHHHhhhcC
Q 001680 1002 RKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1032 (1032)
Q Consensus 1002 ~~l~~~~~g~~~~~~~~~~lt~~dl~~Lf~~ 1032 (1032)
+.+=+-++.++. -...-++..++++||++
T Consensus 1401 r~L~evaiqggd--fTt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1401 RMLDEVAIQGGD--FTTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred HHHHHHhhccCC--ccHHHHhhhhHHHHhcC
Confidence 988888886532 22345777888888875
No 10
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.6e-77 Score=711.82 Aligned_cols=480 Identities=29% Similarity=0.493 Sum_probs=401.9
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCC
Q 001680 291 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 370 (1032)
Q Consensus 291 ~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1032)
+|.-.....||.||++||.||+-..-.. ..||||||||||||||+|+++.+....
T Consensus 362 qp~~~~g~~LRdyQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~~~---------------------- 416 (1373)
T KOG0384|consen 362 QPEYKGGNELRDYQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLFHS---------------------- 416 (1373)
T ss_pred CccccccchhhhhhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHHHh----------------------
Confidence 3544556689999999999999766443 459999999999999999999876443
Q ss_pred CCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC
Q 001680 371 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 450 (1032)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~ 450 (1032)
..-.+|.|||||.|.+.+|++||..|. .+++++|+|....+
T Consensus 417 -----------------------------------~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~sr 457 (1373)
T KOG0384|consen 417 -----------------------------------LQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLESR 457 (1373)
T ss_pred -----------------------------------hhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhHH
Confidence 134578999999999999999999998 59999999987544
Q ss_pred Cc-----------cccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCC
Q 001680 451 DP-----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKG 519 (1032)
Q Consensus 451 ~~-----------~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~ 519 (1032)
.. ...-+++++||||+++-++.
T Consensus 458 ~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----------------------------------------------- 490 (1373)
T KOG0384|consen 458 QLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----------------------------------------------- 490 (1373)
T ss_pred HHHHHHHheecCCccccccceeehhhHHHhccH-----------------------------------------------
Confidence 22 11236899999999987653
Q ss_pred CCCCCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHH
Q 001680 520 NVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKS 599 (1032)
Q Consensus 520 ~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~ 599 (1032)
..|..++|..++|||||++||..+..+..+..++..+|+++||||+||++.|||+|++||+|+.|..+..
T Consensus 491 ----------~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~ 560 (1373)
T KOG0384|consen 491 ----------AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDE 560 (1373)
T ss_pred ----------hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHH
Confidence 2388999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccCchhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 001680 600 FYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFA 679 (1032)
Q Consensus 600 F~~~~~~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~ 679 (1032)
|...+ ......++..|+..|+|+||||.|++|.+ .||++.+.++.|+||..|.++|+.++..-...+.
T Consensus 561 f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~Lt--- 628 (1373)
T KOG0384|consen 561 FLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSALT--- 628 (1373)
T ss_pred HHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHh---
Confidence 98887 33456788999999999999999999987 8999999999999999999999999876444332
Q ss_pred hcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCcccc
Q 001680 680 DAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVT 759 (1032)
Q Consensus 680 ~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt 759 (1032)
.|+.. +..++|..++.||++|+||.|+.+......+.... ....+ .++.
T Consensus 629 -KG~~g-~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~----~~~d~----~L~~--------------------- 677 (1373)
T KOG0384|consen 629 -KGAKG-STPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD----KMRDE----ALQA--------------------- 677 (1373)
T ss_pred -ccCCC-CCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh----cchHH----HHHH---------------------
Confidence 23333 33788999999999999999997633211110000 00000 0000
Q ss_pred ccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHH
Q 001680 760 MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLD 839 (1032)
Q Consensus 760 ~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~Lle 839 (1032)
....|+|+-.|-.
T Consensus 678 -------------------------------------------------------------------lI~sSGKlVLLDK 690 (1373)
T KOG0384|consen 678 -------------------------------------------------------------------LIQSSGKLVLLDK 690 (1373)
T ss_pred -------------------------------------------------------------------HHHhcCcEEeHHH
Confidence 0125789988888
Q ss_pred HHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHH
Q 001680 840 ILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRA 919 (1032)
Q Consensus 840 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~ 919 (1032)
+|-.+.+.|+ |||||||.+.|||+|+++|..++++|-||||+++.+-|+++
T Consensus 691 LL~rLk~~GH-----------------------------rVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~A 741 (1373)
T KOG0384|consen 691 LLPRLKEGGH-----------------------------RVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQA 741 (1373)
T ss_pred HHHHHhcCCc-----------------------------eEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHH
Confidence 8888888777 99999999999999999999999999999999999999999
Q ss_pred HHhhccC-ccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHH
Q 001680 920 VKDFNTD-REITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ 998 (1032)
Q Consensus 920 i~~F~~~-~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq 998 (1032)
|+.||.. .+-+|||+||+|||.||||+.|++||+||..|||....||..|||||||++.|.|||||+++||||.|+++.
T Consensus 742 IDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA 821 (1373)
T KOG0384|consen 742 IDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA 821 (1373)
T ss_pred HHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH
Confidence 9999974 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCC---CCccCCCCHHHHHhhh
Q 001680 999 DDKRKMVASAFGEDQG---GGTASRLTVEDLRYLF 1030 (1032)
Q Consensus 999 ~~K~~l~~~~~g~~~~---~~~~~~lt~~dl~~Lf 1030 (1032)
.+|.-|=..++..... ......++.+||..|+
T Consensus 822 k~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 822 KLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred HHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 9998777777654332 1224678999998874
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-75 Score=654.57 Aligned_cols=545 Identities=28% Similarity=0.444 Sum_probs=399.9
Q ss_pred CccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCC
Q 001680 294 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDN 373 (1032)
Q Consensus 294 ~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1032)
.++.++|+.||+.|+.|+......+ ..||||||||||||+|+|++++++...
T Consensus 562 kil~ctLKEYQlkGLnWLvnlYdqG---iNGILADeMGLGKTVQsisvlAhLaE~------------------------- 613 (1185)
T KOG0388|consen 562 KILKCTLKEYQLKGLNWLVNLYDQG---INGILADEMGLGKTVQSISVLAHLAET------------------------- 613 (1185)
T ss_pred hhhhhhhHHHhhccHHHHHHHHHcc---ccceehhhhccchhHHHHHHHHHHHHh-------------------------
Confidence 4568899999999999999988765 459999999999999999999886432
Q ss_pred CCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCc-
Q 001680 374 GNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP- 452 (1032)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~- 452 (1032)
..-.+|.|||+|+|+|.||+.||.+|+| .++++-|-|+...+..
T Consensus 614 --------------------------------~nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRkiL 658 (1185)
T KOG0388|consen 614 --------------------------------HNIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERKIL 658 (1185)
T ss_pred --------------------------------ccCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhHHH
Confidence 1334779999999999999999999999 8999999998754421
Q ss_pred ----------cccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCC
Q 001680 453 ----------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 522 (1032)
Q Consensus 453 ----------~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~ 522 (1032)
.....++||||||+++..+..
T Consensus 659 rKfw~rKnmY~rna~fhVviTSYQlvVtDek------------------------------------------------- 689 (1185)
T KOG0388|consen 659 RKFWNRKNMYRRNAPFHVVITSYQLVVTDEK------------------------------------------------- 689 (1185)
T ss_pred HHhcchhhhhccCCCceEEEEeeeeeechHH-------------------------------------------------
Confidence 234678999999999875421
Q ss_pred CCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHH
Q 001680 523 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYS 602 (1032)
Q Consensus 523 ~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~ 602 (1032)
-|.++.|-++|+||||.||...|.+++.+...+++.|++||||||||+..|||.|++|++|..|++..+|..
T Consensus 690 --------y~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFse 761 (1185)
T KOG0388|consen 690 --------YLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSE 761 (1185)
T ss_pred --------HHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHH
Confidence 177899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccC-------chhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 001680 603 TIKIPISRN-------SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 675 (1032)
Q Consensus 603 ~~~~pi~~~-------~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~ 675 (1032)
+|.+.|+.. ..+.+++|+.+|+||||||.|++|.. +|..+++..++|+|+..|..+|+.+....-.
T Consensus 762 WFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~-- 834 (1185)
T KOG0388|consen 762 WFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRSISS-- 834 (1185)
T ss_pred HHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHHhhH--
Confidence 998887543 35678999999999999999999985 8999999999999999999999987553221
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhcCccccccccccccc-----ccchHH--------HhhcCChHHHHHHHhhh---
Q 001680 676 KAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSV-----GKISGE--------MAKRLPRDMLIDLLSRL--- 739 (1032)
Q Consensus 676 ~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~-----~~~~~e--------~~~~l~~~~~~~~l~~l--- 739 (1032)
..+..+++.||++|+||.|+......+. ...... +.-.++.....++++..
T Consensus 835 -------------~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fn 901 (1185)
T KOG0388|consen 835 -------------MEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFN 901 (1185)
T ss_pred -------------HHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHh
Confidence 2223478999999999999876443221 000011 01111111111111100
Q ss_pred --cccccccccc----CCCCC---Cc--cccccCc-ccch-----hhhhh-hccC--------------C------CCCC
Q 001680 740 --ETSSAICCVC----SDPPE---DS--VVTMCGH-VFCY-----QCASE-YITG--------------D------DNMC 781 (1032)
Q Consensus 740 --e~~~~~C~ic----~d~~~---~~--vvt~CgH-~fC~-----~Ci~~-~~~~--------------~------~~~c 781 (1032)
+.....|..- .+++. .+ +...-|. +|-. +.+.. .+.. . -.+|
T Consensus 902 iye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~ 981 (1185)
T KOG0388|consen 902 IYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYC 981 (1185)
T ss_pred HHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheee
Confidence 0001111110 01110 00 0000010 0000 00000 0000 0 0011
Q ss_pred CCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhccc
Q 001680 782 PAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAG 861 (1032)
Q Consensus 782 p~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~ 861 (1032)
-.|....+-. .+-..+++.++..+....+ -+....-.. ...-...|+|+..|-++|..+...++
T Consensus 982 y~P~v~apPv--LI~~ead~PeId~E~~~~p-Ln~~i~~Pp-m~~FitdSgKL~~LDeLL~kLkaegH------------ 1045 (1185)
T KOG0388|consen 982 YSPVVAAPPV--LISNEADLPEIDLENRHIP-LNTTIYVPP-MNTFITDSGKLVVLDELLPKLKAEGH------------ 1045 (1185)
T ss_pred eccccCCCCe--eeecccCCCCCCccccCcc-cccceecCc-HHhhhccccceeeHHHHHHHhhcCCc------------
Confidence 1111110000 0000111111111110000 000000000 00113478999999999999888877
Q ss_pred CCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCcc
Q 001680 862 SNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNL 941 (1032)
Q Consensus 862 ~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~ 941 (1032)
+||+|.|.|.|+++|+++|..+|+.|.++||+....+|..+|.+|+. +++.|||+||+|||.
T Consensus 1046 -----------------RvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1046 -----------------RVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGL 1107 (1185)
T ss_pred -----------------eEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcc
Confidence 99999999999999999999999999999999999999999999998 799999999999999
Q ss_pred ccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 001680 942 GLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGED 1012 (1032)
Q Consensus 942 GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~ 1012 (1032)
|+|||+|+.|||||..|||....||++|+||+||+++|+||||++++||||+|+.+...|......++-+.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888888543
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-70 Score=649.14 Aligned_cols=493 Identities=27% Similarity=0.395 Sum_probs=391.3
Q ss_pred CCccccCCchHHHHHHHHHHHhhccCC---CcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCC
Q 001680 293 DGLLSVNLLKHQKIALAWMLQKETRSL---HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDD 369 (1032)
Q Consensus 293 ~~~~~~~LrpyQ~~gv~wml~~e~~~~---~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (1032)
...+...|||||++|+.||+..-.... ...|||+||+||+|||+|+|++|.......
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~-------------------- 291 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQF-------------------- 291 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhC--------------------
Confidence 334567799999999999998766542 467999999999999999999998765430
Q ss_pred CCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCC
Q 001680 370 DDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT 449 (1032)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~ 449 (1032)
| ...+-....|||||.+||.+|++||.+|.... .+..+.++|....
T Consensus 292 ------------------------P---------~~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~~-~i~~l~~~~~~~~ 337 (776)
T KOG0390|consen 292 ------------------------P---------QAKPLINKPLVVAPSSLVNNWKKEFGKWLGNH-RINPLDFYSTKKS 337 (776)
T ss_pred ------------------------c---------CccccccccEEEccHHHHHHHHHHHHHhcccc-ccceeeeecccch
Confidence 0 01123366899999999999999999998753 7888888887764
Q ss_pred C-----C----ccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCC
Q 001680 450 K-----D----PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGN 520 (1032)
Q Consensus 450 ~-----~----~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~ 520 (1032)
. . ....-.+-|.|.+|++++..+..
T Consensus 338 ~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---------------------------------------------- 371 (776)
T KOG0390|consen 338 SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---------------------------------------------- 371 (776)
T ss_pred hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----------------------------------------------
Confidence 1 0 01112356889999998743211
Q ss_pred CCCCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHH
Q 001680 521 VNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSF 600 (1032)
Q Consensus 521 ~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F 600 (1032)
+....+++||+||+|+.||..+.+++++..|++++|++|||||+||++.|+|++++|.+|+.++....|
T Consensus 372 -----------il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf 440 (776)
T KOG0390|consen 372 -----------ILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSF 440 (776)
T ss_pred -----------HhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHH
Confidence 556678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCch-----------hHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHH
Q 001680 601 YSTIKIPISRNSL-----------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLES 669 (1032)
Q Consensus 601 ~~~~~~pi~~~~~-----------~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~ 669 (1032)
.+.+..|+.+... ...++|..+...|++||+.....+ .||++.+.++.|.+++.|..+|..+..
T Consensus 441 ~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~~l~~ 515 (776)
T KOG0390|consen 441 KKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYKKLLD 515 (776)
T ss_pred HHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHHHHHH
Confidence 9999999865322 236789999999999999965554 899999999999999999999999877
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhcccccccccc
Q 001680 670 DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVC 749 (1032)
Q Consensus 670 ~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic 749 (1032)
.. .. ..+. ...|..++.|.++|+||.|+.-.......
T Consensus 516 ~~-~~-~~~~---------~~~l~~~~~L~k~cnhP~L~~~~~~~~~e-------------------------------- 552 (776)
T KOG0390|consen 516 SM-KM-RTLK---------GYALELITKLKKLCNHPSLLLLCEKTEKE-------------------------------- 552 (776)
T ss_pred HH-Hh-hhhh---------cchhhHHHHHHHHhcCHHhhccccccccc--------------------------------
Confidence 53 11 1100 11577889999999999987410000000
Q ss_pred CCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccc
Q 001680 750 SDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEY 829 (1032)
Q Consensus 750 ~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1032)
+ ..+....+. .............
T Consensus 553 -------------------------------------~------~~~~~~~~~--------------~~~~~~~~~~~~~ 575 (776)
T KOG0390|consen 553 -------------------------------------K------AFKNPALLL--------------DPGKLKLDAGDGS 575 (776)
T ss_pred -------------------------------------c------cccChHhhh--------------cccccccccccch
Confidence 0 000000000 0000000011122
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
.|.|+..|+.+|....+.. .+|+++.++++.++++++..++-+|+.++++||
T Consensus 576 ks~kl~~L~~ll~~~~ek~----------------------------~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 576 KSGKLLVLVFLLEVIREKL----------------------------LVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred hhhHHHHHHHHHHHHhhhc----------------------------ceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 4788888888886555432 248999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccc-cEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 910 TMSLPARDRAVKDFNTDREI-TVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~-~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
+|+..+|+.+|+.||+.++. +|||+|++|||+||||.+|+|||+||+.|||+...||++||||.||+|+|+||||++.|
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 99999999999999987665 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001680 989 TVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 1031 (1032)
Q Consensus 989 TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~lt~~dl~~Lf~ 1031 (1032)
|+||+||++|-.|..+-..+|+..... ......++++.||.
T Consensus 708 tiEEk~~qrq~~K~~lS~~v~~~~~~~--~~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 708 TIEEKIYQRQTHKEGLSSMVFDEEEDV--EKHFFTEDLKTLFD 748 (776)
T ss_pred CchHHHHHHHHHhhhhhheEEeccccc--ccccchHHHHHHHh
Confidence 999999999999999999999876542 23344588888885
No 13
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3e-71 Score=647.31 Aligned_cols=462 Identities=31% Similarity=0.492 Sum_probs=394.4
Q ss_pred CCCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCC
Q 001680 289 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 368 (1032)
Q Consensus 289 ~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1032)
..+|..+....|++||+.||.||....+.. ..||||||||||||||+|++|.+....
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNn---LNGILADEMGLGKTIQtIsLitYLmE~-------------------- 440 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNN---LNGILADEMGLGKTIQTISLITYLMEH-------------------- 440 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCC---cccccchhcccchHHHHHHHHHHHHHH--------------------
Confidence 356777778899999999999999998865 459999999999999999999886543
Q ss_pred CCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCC
Q 001680 369 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 448 (1032)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r 448 (1032)
+...+|.|||||.++|.+|..||.+|.| .+..++|.|...
T Consensus 441 -------------------------------------K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp~ 480 (1157)
T KOG0386|consen 441 -------------------------------------KQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTPQ 480 (1157)
T ss_pred -------------------------------------cccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCHH
Confidence 1345779999999999999999999998 899999999875
Q ss_pred CCCc----cccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCC
Q 001680 449 TKDP----VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSS 524 (1032)
Q Consensus 449 ~~~~----~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~ 524 (1032)
.+.. ...++++|++|||+.+.++-
T Consensus 481 ~R~~l~~qir~gKFnVLlTtyEyiikdk---------------------------------------------------- 508 (1157)
T KOG0386|consen 481 QRSGLTKQQRHGKFNVLLTTYEYIIKDK---------------------------------------------------- 508 (1157)
T ss_pred HHhhHHHHHhcccceeeeeeHHHhcCCH----------------------------------------------------
Confidence 4431 23389999999999887641
Q ss_pred cccCCCCCccccccEEEEecCcccCCcccHHHHHHH-hcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHH
Q 001680 525 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACC-SLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYST 603 (1032)
Q Consensus 525 ~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~-~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~ 603 (1032)
..|.++.|.++||||+|++||..++++..+. ...+.+|++|||||+||++.|||+||+||-|..|.+...|..+
T Consensus 509 -----~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqW 583 (1157)
T KOG0386|consen 509 -----ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQW 583 (1157)
T ss_pred -----HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHH
Confidence 2388999999999999999999999999887 5689999999999999999999999999999999999999999
Q ss_pred hccccccCch----------hHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 001680 604 IKIPISRNSL----------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLK 673 (1032)
Q Consensus 604 ~~~pi~~~~~----------~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~ 673 (1032)
|..|+..... -.+.+|+.+|+||++||.|++|.. .||.+++.++.|++|.-|+.+|..+.+..+-
T Consensus 584 FN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~g~l 658 (1157)
T KOG0386|consen 584 FNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNKGQL 658 (1157)
T ss_pred hhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhCCCC
Confidence 9999865431 246799999999999999999986 8999999999999999999999877543211
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCC
Q 001680 674 KFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPP 753 (1032)
Q Consensus 674 ~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~ 753 (1032)
.. ........+..+....+.||++|+||+++.+... .|..|.++
T Consensus 659 ~~----d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~-------------------------------~~~~~~~~- 702 (1157)
T KOG0386|consen 659 LK----DTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN-------------------------------SYTLHYDI- 702 (1157)
T ss_pred Cc----CchhccccchhhhhHhHHHHHhcCCchhhhhhcc-------------------------------ccccccCh-
Confidence 11 1112233456777889999999999998753110 00000000
Q ss_pred CCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchh
Q 001680 754 EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSK 833 (1032)
Q Consensus 754 ~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsK 833 (1032)
.+....++|
T Consensus 703 -----------------------------------------------------------------------~dL~R~sGK 711 (1157)
T KOG0386|consen 703 -----------------------------------------------------------------------KDLVRVSGK 711 (1157)
T ss_pred -----------------------------------------------------------------------hHHHHhccH
Confidence 011225789
Q ss_pred HHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCH
Q 001680 834 IRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSL 913 (1032)
Q Consensus 834 l~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~ 913 (1032)
+..|-.+|-++.+.++ +||.|+|.|.++++++.+|.-.++.|.++||+++.
T Consensus 712 fELLDRiLPKLkatgH-----------------------------RVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~ 762 (1157)
T KOG0386|consen 712 FELLDRILPKLKATGH-----------------------------RVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKV 762 (1157)
T ss_pred HHHHHhhhHHHHhcCc-----------------------------chhhHHHHHHHHHHHHHHHhhhhhheeeecCCcch
Confidence 9988889998888877 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc-CccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHH
Q 001680 914 PARDRAVKDFNT-DREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 992 (1032)
Q Consensus 914 ~eR~~~i~~F~~-~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe 992 (1032)
++|..+++.||. +..+++||+|++|||.|||||.|+.||+||..|||....||.+|+|||||+++|.|+|+++.++|||
T Consensus 763 ~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 763 EERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred hhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 999999999997 4578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 001680 993 RILKLQDDKRKMVASAFGE 1011 (1032)
Q Consensus 993 ~I~~lq~~K~~l~~~~~g~ 1011 (1032)
+|++.+..|.++-..++..
T Consensus 843 ~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 843 KILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred HHHHHHHHhcCchHhhhhc
Confidence 9999999999888777754
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.6e-67 Score=602.47 Aligned_cols=576 Identities=24% Similarity=0.313 Sum_probs=398.2
Q ss_pred ccCCchHHHHHHHHHHHhhc------cCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCC
Q 001680 297 SVNLLKHQKIALAWMLQKET------RSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 370 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~------~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1032)
...|+|||..||+||+..-- ....+.||||||-||||||+|+|+|+......
T Consensus 666 v~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c---------------------- 723 (1567)
T KOG1015|consen 666 VIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLC---------------------- 723 (1567)
T ss_pred HhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHh----------------------
Confidence 45699999999999986321 22356899999999999999999999764321
Q ss_pred CCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCC---CcEEEEEeCCC
Q 001680 371 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKA---ALSVLIYHGGS 447 (1032)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~---~l~vlv~~G~~ 447 (1032)
.+...+++|||||.+++.||.+||++|.+... .+.|..+...+
T Consensus 724 ----------------------------------~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vk 769 (1567)
T KOG1015|consen 724 ----------------------------------DKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVK 769 (1567)
T ss_pred ----------------------------------hccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhcc
Confidence 12345679999999999999999999998421 34444443333
Q ss_pred CCCCc-c----ccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCC
Q 001680 448 RTKDP-V----ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 522 (1032)
Q Consensus 448 r~~~~-~----~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~ 522 (1032)
+..+. . ...+-.|.|.-|+.+++-... ...+.+| ..
T Consensus 770 r~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~g-----------------------r~vk~rk-~k--------------- 810 (1567)
T KOG1015|consen 770 RPEERSYMLQRWQEDGGVMIIGYDMYRNLAQG-----------------------RNVKSRK-LK--------------- 810 (1567)
T ss_pred ChHHHHHHHHHHHhcCCEEEEehHHHHHHhcc-----------------------cchhhhH-HH---------------
Confidence 32211 1 124458999999998864211 0000111 00
Q ss_pred CCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHH
Q 001680 523 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYS 602 (1032)
Q Consensus 523 ~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~ 602 (1032)
+....-|..-++++||+||||.|||..|.+++|+..+++++|++|||||+||+|.|.|.|++|+.++++++..+|.+
T Consensus 811 ---e~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrN 887 (1567)
T KOG1015|consen 811 ---EIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRN 887 (1567)
T ss_pred ---HHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHH
Confidence 00011256677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCch------------hHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 001680 603 TIKIPISRNSL------------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESD 670 (1032)
Q Consensus 603 ~~~~pi~~~~~------------~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~ 670 (1032)
+|.+||.++.. .....|..+|+.++-|+...-+.. .|||++++++.+.+|+.|..+|+.+...
T Consensus 888 RFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk-----~LPPK~eyVi~vrltelQ~~LYq~yL~h 962 (1567)
T KOG1015|consen 888 RFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK-----FLPPKHEYVIAVRLTELQCKLYQYYLDH 962 (1567)
T ss_pred hhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cCCCceeEEEEEeccHHHHHHHHHHHhh
Confidence 99999988742 233457888899988887766554 7999999999999999999999988662
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccC
Q 001680 671 SLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCS 750 (1032)
Q Consensus 671 ~~~~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~ 750 (1032)
......-. .+......++|..+.-|+++..||..+.-....... -+.+.. .+..-++|.
T Consensus 963 -~~~~G~d~--eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~en------kR~~se------------ddm~~fi~D 1021 (1567)
T KOG1015|consen 963 -LTGVGNDS--EGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKEN------KRYFSE------------DDMDEFIAD 1021 (1567)
T ss_pred -ccccCCcc--ccccchhhhHHHHHHHHHHHhcCCCceeechhhhhh------cccccc------------cchhccccC
Confidence 11110000 011124577888999999999999766432211110 000000 011122333
Q ss_pred CCCCCccccccCcccchhhhhhhccCCCCC--------------CCCcccccccccccc----------ccccccccccC
Q 001680 751 DPPEDSVVTMCGHVFCYQCASEYITGDDNM--------------CPAPRCKEQLGADVV----------FSKTTLKNCVS 806 (1032)
Q Consensus 751 d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~--------------cp~~~c~~~l~~~~v----------~~~~~l~~~~~ 806 (1032)
+..+....... .-+|..--.......+.. .-....+.....+.- .....+...-.
T Consensus 1022 ~sde~e~s~~s-~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s 1100 (1567)
T KOG1015|consen 1022 DSDETEMSLSS-DDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSS 1100 (1567)
T ss_pred CCccccccccc-cchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhccccccc
Confidence 22111110000 011111110000000000 000000000000000 00000000000
Q ss_pred CCCCCCCCCCccccc--cCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEe
Q 001680 807 DDGGGSPTDSPFADK--SGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFS 884 (1032)
Q Consensus 807 ~~~~~~~~~~~~~~~--~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFS 884 (1032)
.+ .++...++.+. .........|+|+-.|+++|+...+.|. |+||||
T Consensus 1101 ~~--~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGD-----------------------------KlLVFS 1149 (1567)
T KOG1015|consen 1101 NP--SDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGD-----------------------------KLLVFS 1149 (1567)
T ss_pred CC--CCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcc-----------------------------eeEEee
Confidence 00 00000111110 1112334579999999999999888776 999999
Q ss_pred ccHHHHHHHHHHhhh----------------------cCceEEeeCCCCCHHHHHHHHHhhccCc--cccEEEeecCCCc
Q 001680 885 QWTRMLDLVENSLNQ----------------------HCIQYRRLDGTMSLPARDRAVKDFNTDR--EITVMLMSLKAGN 940 (1032)
Q Consensus 885 qf~~~ld~L~~~L~~----------------------~gi~~~~l~Gs~s~~eR~~~i~~F~~~~--~~~VLLlStkagg 940 (1032)
|....|++|+.+|.. .|..|++|||++...+|+++.++||+.. ..+.|||||+||+
T Consensus 1150 QSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGs 1229 (1567)
T KOG1015|consen 1150 QSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGS 1229 (1567)
T ss_pred cccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCc
Confidence 999999999999963 2678999999999999999999999744 4568999999999
Q ss_pred cccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCC
Q 001680 941 LGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASR 1020 (1032)
Q Consensus 941 ~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~ 1020 (1032)
.|+||.+||+||+||-.|||+...|+|-|+||+||+|||+||||++.||+|++||++|-.|+.+...++++.+. ...
T Consensus 1230 LGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv---~Rh 1306 (1567)
T KOG1015|consen 1230 LGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQV---ERH 1306 (1567)
T ss_pred cccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHH---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988654 345
Q ss_pred CCHHHHHhhhc
Q 001680 1021 LTVEDLRYLFM 1031 (1032)
Q Consensus 1021 lt~~dl~~Lf~ 1031 (1032)
.+.+||..||.
T Consensus 1307 y~~neLteLy~ 1317 (1567)
T KOG1015|consen 1307 YTMNELTELYT 1317 (1567)
T ss_pred hhHhhhHHHhh
Confidence 78899998874
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-62 Score=629.52 Aligned_cols=498 Identities=38% Similarity=0.575 Sum_probs=401.0
Q ss_pred CccccCCchHHHHHHHHHHH-hhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCC
Q 001680 294 GLLSVNLLKHQKIALAWMLQ-KETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDD 372 (1032)
Q Consensus 294 ~~~~~~LrpyQ~~gv~wml~-~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (1032)
..+...|+|||.+|+.||.. ... ...|||||||||||||+|+|+++......
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~~------------------------ 385 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLES------------------------ 385 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhhc------------------------
Confidence 34456899999999999984 433 24789999999999999999999762221
Q ss_pred CCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcE-EEEEeCCCCC--
Q 001680 373 NGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALS-VLIYHGGSRT-- 449 (1032)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~-vlv~~G~~r~-- 449 (1032)
.....++.|||||.+++.||.+|+.+|.+ .++ +.+++|....
T Consensus 386 --------------------------------~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~~ 430 (866)
T COG0553 386 --------------------------------IKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSELD 430 (866)
T ss_pred --------------------------------ccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCccccc
Confidence 00124679999999999999999999987 677 9999998862
Q ss_pred ---CCccccCC------CcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCC
Q 001680 450 ---KDPVELAK------YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGN 520 (1032)
Q Consensus 450 ---~~~~~l~~------~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~ 520 (1032)
.....+.+ +++++|||+.+....
T Consensus 431 ~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~------------------------------------------------ 462 (866)
T COG0553 431 KKREALRDLLKLHLVIIFDVVITTYELLRRFL------------------------------------------------ 462 (866)
T ss_pred HHHHHHHHHhhhcccceeeEEechHHHHHHhh------------------------------------------------
Confidence 12222333 899999999998621
Q ss_pred CCCCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHH-HHccCCcc-hhH
Q 001680 521 VNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR-FLKYDPYA-VYK 598 (1032)
Q Consensus 521 ~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~-fL~p~~~~-~~~ 598 (1032)
.+.+.+..+.|+++|+||||+|||..+..+++++.+++.++|+|||||++|++.|||++++ |+.|+.++ ...
T Consensus 463 ------~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~ 536 (866)
T COG0553 463 ------VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFA 536 (866)
T ss_pred ------hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHH
Confidence 0112377889999999999999999999999999999999999999999999999999999 99999999 668
Q ss_pred HHHHHhccccccCch--------hHHHHHHHHHHHHHhhhccCc--cccCCCcccCCCCeEEEEEecCCHHHHHHHHHHH
Q 001680 599 SFYSTIKIPISRNSL--------HGYKKLQAVLRAIMLRRTKGT--FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLE 668 (1032)
Q Consensus 599 ~F~~~~~~pi~~~~~--------~~~~~L~~~L~~~~lRRtk~~--v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~ 668 (1032)
.|...|..|+..... .....|+.++.+|++||++.+ +.. .||++.+.++.|+++.+|+.+|..+.
T Consensus 537 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-----~Lp~k~e~~~~~~l~~~q~~~y~~~~ 611 (866)
T COG0553 537 IFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLK-----ELPPKIEKVLECELSEEQRELYEALL 611 (866)
T ss_pred HHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHH-----hCChhhhhhhhhcccHHHHHHHHHHH
Confidence 999999999865543 344558899999999999999 554 89999999999999999999999998
Q ss_pred H---HHHHHHHHHHhcCCC--cc--hHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhcc
Q 001680 669 S---DSLKKFKAFADAGTV--NQ--NYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLET 741 (1032)
Q Consensus 669 ~---~~~~~~~~~~~~g~~--~~--~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~ 741 (1032)
. .....+......... .. ...+++..+++||++|+||.++.......
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~-------------------------- 665 (866)
T COG0553 612 EGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEAT-------------------------- 665 (866)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccccccc--------------------------
Confidence 8 444444443332211 11 36789999999999999999886421000
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADK 821 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~ 821 (1032)
.+..+.....+.....|.|.
T Consensus 666 ---~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 685 (866)
T COG0553 666 ---FDRIVLLLREDKDFDYLKKP--------------------------------------------------------- 685 (866)
T ss_pred ---cchhhhhhhcccccccccch---------------------------------------------------------
Confidence 00000000000000000010
Q ss_pred cCCCCccccc-hhHHHHHHHH-HHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhh
Q 001680 822 SGILDNEYIS-SKIRTVLDIL-HTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQ 899 (1032)
Q Consensus 822 ~~~~~~~~~S-sKl~~LlelL-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~ 899 (1032)
....+ .|+..+.++| ......+. ..|+|||+||+.++++|+..|..
T Consensus 686 -----~~~~s~~k~~~l~~ll~~~~~~~~~---------------------------~~kvlifsq~t~~l~il~~~l~~ 733 (866)
T COG0553 686 -----LIQLSKGKLQALDELLLDKLLEEGH---------------------------YHKVLIFSQFTPVLDLLEDYLKA 733 (866)
T ss_pred -----hhhccchHHHHHHHHHHHHHHhhcc---------------------------cccEEEEeCcHHHHHHHHHHHHh
Confidence 11235 7899998988 55555432 03999999999999999999999
Q ss_pred cCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccE
Q 001680 900 HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 979 (1032)
Q Consensus 900 ~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 979 (1032)
.++.+++++|+++.+.|+.++++|+++++..||++|++|||.||||+.|++||++||||||+.+.||++|+|||||+++|
T Consensus 734 ~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 734 LGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred cCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCccee
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001680 980 TVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 1031 (1032)
Q Consensus 980 ~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~lt~~dl~~Lf~ 1031 (1032)
.||+|+++||+||+|+.+|..|..+...++++ ........++.+++..||.
T Consensus 814 ~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 814 KVYRLITRGTIEEKILELQEKKQELLDSLIDA-EGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred EEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh-hcccchhhccHHHHHHHhc
Confidence 99999999999999999999999999999986 2234457899999999986
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-55 Score=481.71 Aligned_cols=423 Identities=27% Similarity=0.364 Sum_probs=326.9
Q ss_pred CCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCC
Q 001680 291 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 370 (1032)
Q Consensus 291 ~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1032)
+|+.+.. .|+|||++||.+.+.+. .-.|||||||||||+||||+..+.+..
T Consensus 191 ~d~kLvs-~LlPFQreGv~faL~Rg------GR~llADeMGLGKTiQAlaIA~yyraE---------------------- 241 (689)
T KOG1000|consen 191 MDPKLVS-RLLPFQREGVIFALERG------GRILLADEMGLGKTIQALAIARYYRAE---------------------- 241 (689)
T ss_pred cCHHHHH-hhCchhhhhHHHHHhcC------CeEEEecccccchHHHHHHHHHHHhhc----------------------
Confidence 4555545 49999999999999642 125999999999999999999876543
Q ss_pred CCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC
Q 001680 371 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 450 (1032)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~ 450 (1032)
++.|||||++|...|++++.+|+|.. ..+.+..+.....
T Consensus 242 ---------------------------------------wplliVcPAsvrftWa~al~r~lps~--~pi~vv~~~~D~~ 280 (689)
T KOG1000|consen 242 ---------------------------------------WPLLIVCPASVRFTWAKALNRFLPSI--HPIFVVDKSSDPL 280 (689)
T ss_pred ---------------------------------------CcEEEEecHHHhHHHHHHHHHhcccc--cceEEEecccCCc
Confidence 55899999999999999999999964 3344444433211
Q ss_pred Ccccc-CCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCC
Q 001680 451 DPVEL-AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGC 529 (1032)
Q Consensus 451 ~~~~l-~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~ 529 (1032)
..+ ....|+|+||+.+....
T Consensus 281 --~~~~t~~~v~ivSye~ls~l~--------------------------------------------------------- 301 (689)
T KOG1000|consen 281 --PDVCTSNTVAIVSYEQLSLLH--------------------------------------------------------- 301 (689)
T ss_pred --cccccCCeEEEEEHHHHHHHH---------------------------------------------------------
Confidence 111 22458999999987521
Q ss_pred CCCccccccEEEEecCcccCCcccHHHHHHHhc--ccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhccc
Q 001680 530 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIP 607 (1032)
Q Consensus 530 ~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L--~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~p 607 (1032)
..|..-.|..||+||+|++|+..+++.+++..+ .+++.++|||||-..++.|||.++..+++..|.++.+|..+|+.-
T Consensus 302 ~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~ 381 (689)
T KOG1000|consen 302 DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDG 381 (689)
T ss_pred HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCc
Confidence 014445599999999999999999999999887 789999999999999999999999999999999999999988643
Q ss_pred ccc------CchhHHHHHHHHH-HHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHh
Q 001680 608 ISR------NSLHGYKKLQAVL-RAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD 680 (1032)
Q Consensus 608 i~~------~~~~~~~~L~~~L-~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~ 680 (1032)
-.- ..-....+|..+| +.+|+||+|.+++. +||||..+++.+ ..+.+.+.-+.+......
T Consensus 382 k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~------- 448 (689)
T KOG1000|consen 382 KQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRREVVYV-SGGRIDARMDDLVKAAAD------- 448 (689)
T ss_pred cccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccceEEEEE-cCCccchHHHHHHHHhhh-------
Confidence 211 1223467788777 56899999999986 899995555544 344433333333222111
Q ss_pred cCCCcch-HHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCcccc
Q 001680 681 AGTVNQN-YANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVT 759 (1032)
Q Consensus 681 ~g~~~~~-~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt 759 (1032)
++.... -.+-..+++..++
T Consensus 449 -~t~~~~~e~~~~~l~l~y~~----------------------------------------------------------- 468 (689)
T KOG1000|consen 449 -YTKVNSMERKHESLLLFYSL----------------------------------------------------------- 468 (689)
T ss_pred -cchhhhhhhhhHHHHHHHHH-----------------------------------------------------------
Confidence 010000 0000111111111
Q ss_pred ccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHH
Q 001680 760 MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLD 839 (1032)
Q Consensus 760 ~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~Lle 839 (1032)
..-.|+.++.+
T Consensus 469 ---------------------------------------------------------------------tgiaK~~av~e 479 (689)
T KOG1000|consen 469 ---------------------------------------------------------------------TGIAKAAAVCE 479 (689)
T ss_pred ---------------------------------------------------------------------hcccccHHHHH
Confidence 12457777777
Q ss_pred HHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHH
Q 001680 840 ILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRA 919 (1032)
Q Consensus 840 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~ 919 (1032)
.|..+.--. ..++.|+|||+.+..+||-|+..+.++++.++||||+++..+|+.+
T Consensus 480 yi~~~~~l~-------------------------d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 480 YILENYFLP-------------------------DAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred HHHhCcccc-------------------------cCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHH
Confidence 666522111 1345699999999999999999999999999999999999999999
Q ss_pred HHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHH
Q 001680 920 VKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 999 (1032)
Q Consensus 920 i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~ 999 (1032)
++.||.+.+++|-++|..|+|+||+|++|+.|+|.+++|||....||.||+||+||+..|.||+|+++||+||.++...+
T Consensus 535 ~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 535 CQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 001680 1000 DKRKMVASAF 1009 (1032)
Q Consensus 1000 ~K~~l~~~~~ 1009 (1032)
.|.+.+.++=
T Consensus 615 ~KL~vl~s~g 624 (689)
T KOG1000|consen 615 QKLDVLGSVG 624 (689)
T ss_pred HHHHHHhhcc
Confidence 9998776653
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-56 Score=504.37 Aligned_cols=570 Identities=23% Similarity=0.335 Sum_probs=378.1
Q ss_pred ccCCchHHHHHHHHHHHhhccC------CCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCC
Q 001680 297 SVNLLKHQKIALAWMLQKETRS------LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 370 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~------~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1032)
..-|+|||.-|+.||+...-.+ ..++|||||+.||||||+|+|+++......
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRh---------------------- 309 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRH---------------------- 309 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhc----------------------
Confidence 3349999999999997643221 236899999999999999999998664332
Q ss_pred CCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCC--------CCcEEEE
Q 001680 371 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDK--------AALSVLI 442 (1032)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~--------~~l~vlv 442 (1032)
-+++++|+|+|-..+.||..|+..|+|.- ..+.|.+
T Consensus 310 ------------------------------------T~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~ 353 (1387)
T KOG1016|consen 310 ------------------------------------TKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFL 353 (1387)
T ss_pred ------------------------------------CccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEE
Confidence 55788999999999999999999999851 1345555
Q ss_pred EeCCCCCCCc------cccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhcc-ccccccccC
Q 001680 443 YHGGSRTKDP------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI-SNVSKRGKK 515 (1032)
Q Consensus 443 ~~G~~r~~~~------~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~-~~~~~k~~~ 515 (1032)
.....++-+. .....-.|.++-|++++--..+ +-+ .+..+|.++
T Consensus 354 LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk-----------------------------~~~~~grpkkt~k 404 (1387)
T KOG1016|consen 354 LNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILK-----------------------------TLPKKGRPKKTLK 404 (1387)
T ss_pred ecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHh-----------------------------cccccCCcccccc
Confidence 5443322211 1124557899999887642111 111 111122222
Q ss_pred CCCCCCC--C-------CcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHH
Q 001680 516 GKKGNVN--S-------SIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYF 586 (1032)
Q Consensus 516 ~~~~~~~--~-------~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll 586 (1032)
+.+.... + .+.....-|..-+.++||+||+|+|||.....+.+++.|++++|+.|||-|+||++-|.|.|+
T Consensus 405 r~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMV 484 (1387)
T KOG1016|consen 405 RISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMV 484 (1387)
T ss_pred ccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhh
Confidence 2111110 1 111122346677899999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCcchhHHHHHHhccccccCch------------hHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEe
Q 001680 587 RFLKYDPYAVYKSFYSTIKIPISRNSL------------HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 654 (1032)
Q Consensus 587 ~fL~p~~~~~~~~F~~~~~~pi~~~~~------------~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v 654 (1032)
+|++|+.++..++|...|++||..+.- -....|+.+|..|+-||+..-+. +.||.+.+.++.+
T Consensus 485 DFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyViLv 559 (1387)
T KOG1016|consen 485 DFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVILV 559 (1387)
T ss_pred eeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEEEE
Confidence 999999999999999999999976631 12346788999999999987654 4799999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHH
Q 001680 655 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLID 734 (1032)
Q Consensus 655 ~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~ 734 (1032)
.++..||++|..+.....+.. ++..-...+-|.++.---++.+||..+........ ...+.. +. .+
T Consensus 560 r~s~iQR~LY~~Fm~d~~r~~------~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~--~a~e~d--l~----ve 625 (1387)
T KOG1016|consen 560 RKSQIQRQLYRNFMLDAKREI------AANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKK--RAEEDD--LR----VE 625 (1387)
T ss_pred eHHHHHHHHHHHHHHHHHHhh------ccccccccChHHHHHHHHHhcCChHHHHHHHHHhh--hhhhhh--hh----HH
Confidence 999999999998864433322 11111112445555566677789987653211000 000000 00 00
Q ss_pred HHhhhccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccC--CCCCCC
Q 001680 735 LLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVS--DDGGGS 812 (1032)
Q Consensus 735 ~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~--~~~~~~ 812 (1032)
.+.. ......|+--..++.++-.+ .... +.+... .+....
T Consensus 626 e~~~-ag~~~~~~P~~~~~~~~s~~------------------------------------laSs-~~k~~n~t~kp~~s 667 (1387)
T KOG1016|consen 626 EMKF-AGLQQQQSPFNSIPSNPSTP------------------------------------LASS-TSKSANKTKKPRGS 667 (1387)
T ss_pred HHhh-hcccccCCCCCCCCCCCCCc------------------------------------ccch-hhhhhcccCCcccC
Confidence 0000 00111121111111110000 0000 000000 000000
Q ss_pred CCCCccccccCCCCccccchhH-HHHHHHHHHh----hhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccH
Q 001680 813 PTDSPFADKSGILDNEYISSKI-RTVLDILHTQ----CELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWT 887 (1032)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~SsKl-~~LlelL~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~ 887 (1032)
...+.+.+.... --|. .+..+++... ++.+.++.+.- . +.. ....-++|+|||||..
T Consensus 668 ~~~p~f~ee~~e------~~~y~~w~~el~~nYq~gvLen~pk~V~~~--~---------~~d-es~~~g~kil~fSq~l 729 (1387)
T KOG1016|consen 668 KKAPKFDEEDEE------VEKYSDWTFELFENYQEGVLENGPKIVISL--E---------ILD-ESTQIGEKILIFSQNL 729 (1387)
T ss_pred cCCCCccccccc------ccchhhHHHHHHhhhhcccccCCCceEEEE--e---------eec-cccccCceEEEeecch
Confidence 000111110000 0000 2222222211 11111110000 0 000 0001245999999999
Q ss_pred HHHHHHHHHhhhc------------------CceEEeeCCCCCHHHHHHHHHhhccCcccc-EEEeecCCCccccccccC
Q 001680 888 RMLDLVENSLNQH------------------CIQYRRLDGTMSLPARDRAVKDFNTDREIT-VMLMSLKAGNLGLNMVAA 948 (1032)
Q Consensus 888 ~~ld~L~~~L~~~------------------gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~-VLLlStkagg~GLNL~~A 948 (1032)
..|++|++.|.++ .+.|.+++|.++..+|+++|++||..+.+. .|++|+++|..|+||..|
T Consensus 730 ~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsa 809 (1387)
T KOG1016|consen 730 TALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISA 809 (1387)
T ss_pred hHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeecc
Confidence 9999999999865 246889999999999999999999988887 899999999999999999
Q ss_pred CEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHh
Q 001680 949 SHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRY 1028 (1032)
Q Consensus 949 ~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~lt~~dl~~ 1028 (1032)
|+||++|..|||....||.+|++|+||+|+++|||||+..++|.+||.+|-.|+.|.+.++++-.. ...++..||..
T Consensus 810 nr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np---~an~s~Ke~en 886 (1387)
T KOG1016|consen 810 NRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANP---DANISQKELEN 886 (1387)
T ss_pred ceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCc---cccccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999976533 34578888887
Q ss_pred hhc
Q 001680 1029 LFM 1031 (1032)
Q Consensus 1029 Lf~ 1031 (1032)
|++
T Consensus 887 Ll~ 889 (1387)
T KOG1016|consen 887 LLM 889 (1387)
T ss_pred Hhh
Confidence 764
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.2e-54 Score=536.46 Aligned_cols=420 Identities=20% Similarity=0.288 Sum_probs=314.7
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCc
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
.+.|+|||+..+.+++.+.. ...||||||||||||+|++++..+...
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~-----~R~LLADEvGLGKTIeAglil~~l~~~---------------------------- 196 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHA-----PRVLLADEVGLGKTIEAGMIIHQQLLT---------------------------- 196 (956)
T ss_pred CCCCCHHHHHHHHHHhhccC-----CCEEEEeCCcCcHHHHHHHHHHHHHHc----------------------------
Confidence 66799999999988876543 347999999999999998888654321
Q ss_pred CcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCC----CCc
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT----KDP 452 (1032)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~----~~~ 452 (1032)
+..+++|||||++|+.||..|+.+++. +.+.++.+..-. ...
T Consensus 197 ------------------------------g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~~~ 242 (956)
T PRK04914 197 ------------------------------GRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHDAD 242 (956)
T ss_pred ------------------------------CCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhccccc
Confidence 345679999999999999999988874 556666654311 111
Q ss_pred cccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCC
Q 001680 453 VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL 532 (1032)
Q Consensus 453 ~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 532 (1032)
..+..++++|+||+.++++... ...+
T Consensus 243 ~pf~~~~~vI~S~~~l~~~~~~------------------------------------------------------~~~l 268 (956)
T PRK04914 243 NPFETEQLVICSLDFLRRNKQR------------------------------------------------------LEQA 268 (956)
T ss_pred CccccCcEEEEEHHHhhhCHHH------------------------------------------------------HHHH
Confidence 3445789999999998753100 0014
Q ss_pred ccccccEEEEecCcccCCc---ccHHHHHHHhc--ccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhcc-
Q 001680 533 AKVGWFRVVLDEAQTIKNH---RTQVARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI- 606 (1032)
Q Consensus 533 ~~~~w~rVIlDEAH~iKN~---~S~~~kal~~L--~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~- 606 (1032)
....|++|||||||++++. .|+.++++..| +++++++|||||++|+..|+|++++||+|+.|.++..|....+.
T Consensus 269 ~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~ 348 (956)
T PRK04914 269 LAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQY 348 (956)
T ss_pred hhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhh
Confidence 4567999999999999953 46778888888 57899999999999999999999999999999999999753321
Q ss_pred -cc--------ccC--chhHHHHH---------------------------HHHHH---------HHHhhhccCccccCC
Q 001680 607 -PI--------SRN--SLHGYKKL---------------------------QAVLR---------AIMLRRTKGTFIDGQ 639 (1032)
Q Consensus 607 -pi--------~~~--~~~~~~~L---------------------------~~~L~---------~~~lRRtk~~v~~g~ 639 (1032)
|+ ... .......| +.+++ .+|+|+++..+.
T Consensus 349 ~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~--- 425 (956)
T PRK04914 349 RPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK--- 425 (956)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc---
Confidence 11 000 00111111 11222 467788888765
Q ss_pred CcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccc
Q 001680 640 PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKI 719 (1032)
Q Consensus 640 p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~ 719 (1032)
.+|++..+.+.+++.++.+..+... .. ..+++ +.+|..+..
T Consensus 426 ---~fp~R~~~~~~l~~~~~y~~~~~~~---~~-----------------------~~~~~-~l~pe~~~~--------- 466 (956)
T PRK04914 426 ---GFPKRELHPIPLPLPEQYQTAIKVS---LE-----------------------ARARD-MLYPEQIYQ--------- 466 (956)
T ss_pred ---CCCcCceeEeecCCCHHHHHHHHHh---HH-----------------------HHHHh-hcCHHHHHH---------
Confidence 5999999999999977644443210 00 01111 112210000
Q ss_pred hHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcccccccccccccccc
Q 001680 720 SGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKT 799 (1032)
Q Consensus 720 ~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~ 799 (1032)
.++..
T Consensus 467 ------------------~~~~~--------------------------------------------------------- 471 (956)
T PRK04914 467 ------------------EFEDN--------------------------------------------------------- 471 (956)
T ss_pred ------------------HHhhh---------------------------------------------------------
Confidence 00000
Q ss_pred ccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCce
Q 001680 800 TLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIK 879 (1032)
Q Consensus 800 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 879 (1032)
......++|+.+|+++|+... + .|
T Consensus 472 -------------------------~~~~~~d~Ki~~L~~~L~~~~--~-----------------------------~K 495 (956)
T PRK04914 472 -------------------------ATWWNFDPRVEWLIDFLKSHR--S-----------------------------EK 495 (956)
T ss_pred -------------------------hhccccCHHHHHHHHHHHhcC--C-----------------------------Ce
Confidence 000114689999999997643 2 39
Q ss_pred EEEEeccHHHHHHHHHHh-hhcCceEEeeCCCCCHHHHHHHHHhhccCc-cccEEEeecCCCccccccccCCEEEEecCC
Q 001680 880 SIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLW 957 (1032)
Q Consensus 880 vIIFSqf~~~ld~L~~~L-~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~-~~~VLLlStkagg~GLNL~~A~~VI~~Dp~ 957 (1032)
+||||++..+++.|.+.| ...|++++.|+|+|+..+|+++++.|++++ +++||| ++++||+|+||+.|++||+||+|
T Consensus 496 vLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI-sTdvgseGlNlq~a~~VInfDlP 574 (956)
T PRK04914 496 VLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL-CSEIGSEGRNFQFASHLVLFDLP 574 (956)
T ss_pred EEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE-echhhccCCCcccccEEEEecCC
Confidence 999999999999999999 567999999999999999999999999753 677766 55999999999999999999999
Q ss_pred CCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcC
Q 001680 958 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 1011 (1032)
Q Consensus 958 WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~ 1011 (1032)
|||..++|||||+||+||+++|.||.++.++|+|++|+++...|.++++..++.
T Consensus 575 ~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~ 628 (956)
T PRK04914 575 FNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPT 628 (956)
T ss_pred CCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCC
Confidence 999999999999999999999999999999999999999999998777766654
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-49 Score=476.80 Aligned_cols=374 Identities=30% Similarity=0.504 Sum_probs=250.1
Q ss_pred CCCCCCccccCCchHHHHHHHHHHHhhccC--------------------------------------CCcccceeecCC
Q 001680 289 ATLPDGLLSVNLLKHQKIALAWMLQKETRS--------------------------------------LHCLGGILADDQ 330 (1032)
Q Consensus 289 ~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~--------------------------------------~~~~GGILADem 330 (1032)
.+++..+ .-+||+||...+.||.+++..- ..+.||.+||+|
T Consensus 236 ~D~~~~~-~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~~e~l~~~~t~~de~ 314 (1394)
T KOG0298|consen 236 LDLIKRF-QSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELPKESLSPGGTLADEM 314 (1394)
T ss_pred chHHHHh-hhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccchhccCCCcchHHHHh
Confidence 3444444 4469999999999999887731 125689999999
Q ss_pred CCchHHHHHHHHHhhhcccccchhhhcc----------------ccccccccCCCCCCCCCcCc--ccc------ccc-C
Q 001680 331 GLGKTISIIALIQMQRSLQSKSKTEVLG----------------NQKTEALNLDDDDDNGNAGL--DKV------KET-G 385 (1032)
Q Consensus 331 GLGKTiqaIali~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~--~~~------~~~-~ 385 (1032)
|||||+.-+|++..++....-+....-. .++..-.-+..+-..|.... +.. +.. .
T Consensus 315 gl~k~~E~~a~~~~n~~p~~~~~~s~~~~~~~~~~~~~e~~~~r~nq~~~~~~~~~~~~g~~~~~ade~~~qk~~~~l~~ 394 (1394)
T KOG0298|consen 315 GLGKTVEFLAMLTSNRRPPDSYRNSYLHQRLEEYSDEVELKRSRINQKDEVLCSGDKKHGKRVQCADEMGWQKTSEKLIL 394 (1394)
T ss_pred hhHHHHHHHHHHhccCCCcccccchHHHHHHHHHhhhhHhHHhHhhhhhHHhhcCCccCCcceeehhhhhccchHHHHHH
Confidence 9999999999998877653211110000 00000000000111110000 000 000 0
Q ss_pred CCCC-CCCCCcccc-ccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC--CccccCCCcEE
Q 001680 386 ESDD-IKPVPEVST-STRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVV 461 (1032)
Q Consensus 386 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~--~~~~l~~~dVV 461 (1032)
...+ .+-.+..++ -..........++||||||.+++.||..||.+|++. .++|+.|.|-...- .+.++..||||
T Consensus 395 ~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDIV 472 (1394)
T KOG0298|consen 395 ELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDIV 472 (1394)
T ss_pred HHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCEE
Confidence 0001 011111111 112222335568999999999999999999999986 47999999976443 45788999999
Q ss_pred EEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccccccEEE
Q 001680 462 LTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVV 541 (1032)
Q Consensus 462 ItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~~~w~rVI 541 (1032)
+|||+++++++...+. .+. . |..+.. +..-...+||..+.|+||+
T Consensus 473 lTtYdiLr~El~hte~-------------~~~-~----------------R~lR~q-----sr~~~~~SPL~~v~wWRIc 517 (1394)
T KOG0298|consen 473 LTTYDILRNELYHTED-------------FGS-D----------------RQLRHQ-----SRYMRPNSPLLMVNWWRIC 517 (1394)
T ss_pred EeehHHHHhHhhcccc-------------cCC-h----------------hhhhcc-----cCCCCCCCchHHHHHHHHh
Confidence 9999999998654210 000 0 000000 0111234689999999999
Q ss_pred EecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhccccccCchhHHHHHHH
Q 001680 542 LDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQA 621 (1032)
Q Consensus 542 lDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~pi~~~~~~~~~~L~~ 621 (1032)
|||||.+....|+.++++..|.+.++||.|||||++ ++||+.+|.||+..||....+|...+..++.+. .....+.+
T Consensus 518 lDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~d 594 (1394)
T KOG0298|consen 518 LDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLD 594 (1394)
T ss_pred hhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHH
Confidence 999999999999999999999999999999999999 999999999999999999999999887766544 33456778
Q ss_pred HHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHH----HHHHHHHHHHHHhc---------CCCcchH
Q 001680 622 VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKL----ESDSLKKFKAFADA---------GTVNQNY 688 (1032)
Q Consensus 622 ~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l----~~~~~~~~~~~~~~---------g~~~~~~ 688 (1032)
++...+-|+.+..+... +.+||..+.+....+++.+-.+|+.. ..+.+..+...... +.-....
T Consensus 595 l~~q~l~R~~k~~v~~e---l~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~ 671 (1394)
T KOG0298|consen 595 LFKQLLWRTFKSKVEHE---LGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLL 671 (1394)
T ss_pred HHHhhhhhhhhHHHHHH---hCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhH
Confidence 89999999999887542 57999988888888887776666433 33333333222211 1112335
Q ss_pred HHHHHHHHHHHhhcCccc
Q 001680 689 ANILLMLLRLRQACDHPL 706 (1032)
Q Consensus 689 ~~iL~~L~rLRq~c~hP~ 706 (1032)
+.++..+++|||+||||.
T Consensus 672 a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 672 AIILKWLLRLRQACCHPL 689 (1394)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 778899999999999993
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=7.1e-44 Score=399.17 Aligned_cols=291 Identities=40% Similarity=0.643 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHhh------ccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCc
Q 001680 303 HQKIALAWMLQKE------TRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 303 yQ~~gv~wml~~e------~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
||++||.||++++ ......+|||||||||+|||+++|+++.......
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~--------------------------- 53 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF--------------------------- 53 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC---------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc---------------------------
Confidence 8999999999998 2222458999999999999999999997543220
Q ss_pred CcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCC--CCCCccc
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVE 454 (1032)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~--r~~~~~~ 454 (1032)
.....+++|||||.+++.||..||.+|+++. .+++++|+|.. +......
T Consensus 54 ----------------------------~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 104 (299)
T PF00176_consen 54 ----------------------------PQRGEKKTLIVVPSSLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ 104 (299)
T ss_dssp ----------------------------TTSS-S-EEEEE-TTTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS
T ss_pred ----------------------------ccccccceeEeeccchhhhhhhhhccccccc-cccccccccccccccccccc
Confidence 0012235999999999999999999999643 67999999987 3334455
Q ss_pred cCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCcc
Q 001680 455 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 534 (1032)
Q Consensus 455 l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~ 534 (1032)
...++++|+||+.+...... .....+..
T Consensus 105 ~~~~~vvi~ty~~~~~~~~~----------------------------------------------------~~~~~l~~ 132 (299)
T PF00176_consen 105 LPKYDVVITTYETLRKARKK----------------------------------------------------KDKEDLKQ 132 (299)
T ss_dssp CCCSSEEEEEHHHHH--TST----------------------------------------------------HTTHHHHT
T ss_pred cccceeeecccccccccccc----------------------------------------------------cccccccc
Confidence 68899999999999821000 00112666
Q ss_pred ccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhccccccCchh
Q 001680 535 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLH 614 (1032)
Q Consensus 535 ~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~pi~~~~~~ 614 (1032)
++|++|||||+|.+||..+..++++..|++.++|+|||||++|++.|+|++++||.++.+.+...|...+..+.......
T Consensus 133 ~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~ 212 (299)
T PF00176_consen 133 IKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYE 212 (299)
T ss_dssp SEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHH
T ss_pred ccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999886664444556
Q ss_pred HHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q 001680 615 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 694 (1032)
Q Consensus 615 ~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~ 694 (1032)
...+|+.+++.+++||++.++.. .||+..+.++.++|+++|+++|+.+.......+.... .........++..
T Consensus 213 ~~~~L~~~l~~~~~r~~~~d~~~-----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 285 (299)
T PF00176_consen 213 NIERLRELLSEFMIRRTKKDVEK-----ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSLLQI 285 (299)
T ss_dssp HHHHHHHHHCCCEECHCGGGGCT-----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHHHHH
T ss_pred cccccccccchhhhhhhcccccc-----cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHH
Confidence 78899999999999999998843 7999999999999999999999988776555433222 2345678899999
Q ss_pred HHHHHhhcCccccc
Q 001680 695 LLRLRQACDHPLLV 708 (1032)
Q Consensus 695 L~rLRq~c~hP~L~ 708 (1032)
+.+|||+|+||.|+
T Consensus 286 ~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 286 LKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHH-THHC
T ss_pred HHHHHHHhCCcccC
Confidence 99999999999874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-36 Score=360.76 Aligned_cols=355 Identities=18% Similarity=0.237 Sum_probs=254.8
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCc
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
...|||||.+|+.||+... ..++|||...||+|||+++++++...
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g----r~r~GIIvLPtGaGKTlvai~aa~~l------------------------------- 297 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKSLVGVTAACTV------------------------------- 297 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC----CCCCcEEEeCCCCChHHHHHHHHHHh-------------------------------
Confidence 4579999999999997432 23579999999999999999888542
Q ss_pred CcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCcccc
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 455 (1032)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l 455 (1032)
.+++|||||.+ ++.||.+||.+|+... ...+..|.|..+... .
T Consensus 298 --------------------------------~k~tLILvps~~Lv~QW~~ef~~~~~l~-~~~I~~~tg~~k~~~---~ 341 (732)
T TIGR00603 298 --------------------------------KKSCLVLCTSAVSVEQWKQQFKMWSTID-DSQICRFTSDAKERF---H 341 (732)
T ss_pred --------------------------------CCCEEEEeCcHHHHHHHHHHHHHhcCCC-CceEEEEecCccccc---c
Confidence 13499999977 5899999999997432 456777888654321 2
Q ss_pred CCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccc
Q 001680 456 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 535 (1032)
Q Consensus 456 ~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~~ 535 (1032)
...+|+|+||+++.+........ ......|...
T Consensus 342 ~~~~VvVtTYq~l~~~~~r~~~~-----------------------------------------------~~~l~~l~~~ 374 (732)
T TIGR00603 342 GEAGVVVSTYSMVAHTGKRSYES-----------------------------------------------EKVMEWLTNR 374 (732)
T ss_pred cCCcEEEEEHHHhhcccccchhh-----------------------------------------------hHHHHHhccc
Confidence 45789999999987542110000 0000114456
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHH-HccCCcchhHHHHHHhccccccCchh
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF-LKYDPYAVYKSFYSTIKIPISRNSLH 614 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~f-L~p~~~~~~~~F~~~~~~pi~~~~~~ 614 (1032)
.|++||+||||++.+ ....+.+..+++.+||+|||||+.+. +.+..+.+ ++|..|.. .|...
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~eL----------- 437 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMEL----------- 437 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHHHH-----------
Confidence 799999999999964 33445677789999999999999875 33333333 34432211 11110
Q ss_pred HHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q 001680 615 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 694 (1032)
Q Consensus 615 ~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~ 694 (1032)
++ .| -|.+.....+.|+|++++...|...... ...+
T Consensus 438 --------i~------------~G----~LA~~~~~ev~v~~t~~~~~~yl~~~~~------------------~k~~-- 473 (732)
T TIGR00603 438 --------QK------------KG----FIANVQCAEVWCPMTPEFYREYLRENSR------------------KRML-- 473 (732)
T ss_pred --------Hh------------CC----ccccceEEEEEecCCHHHHHHHHHhcch------------------hhhH--
Confidence 00 11 4666667789999999865555321000 0000
Q ss_pred HHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccccccCcccchhhhhhhc
Q 001680 695 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYI 774 (1032)
Q Consensus 695 L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~ 774 (1032)
| .+
T Consensus 474 ---l--~~------------------------------------------------------------------------ 476 (732)
T TIGR00603 474 ---L--YV------------------------------------------------------------------------ 476 (732)
T ss_pred ---H--hh------------------------------------------------------------------------
Confidence 0 00
Q ss_pred cCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHHhhhcccccchh
Q 001680 775 TGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 854 (1032)
Q Consensus 775 ~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~ 854 (1032)
....|+.++..++..+...+.
T Consensus 477 ------------------------------------------------------~np~K~~~~~~Li~~he~~g~----- 497 (732)
T TIGR00603 477 ------------------------------------------------------MNPNKFRACQFLIRFHEQRGD----- 497 (732)
T ss_pred ------------------------------------------------------hChHHHHHHHHHHHHHhhcCC-----
Confidence 013588888888876543333
Q ss_pred hhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEe
Q 001680 855 EIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 934 (1032)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLl 934 (1032)
|+||||++...++.+...|. . ..|+|.|+..+|.+++++|+.++.+.+|++
T Consensus 498 ------------------------kiLVF~~~~~~l~~~a~~L~---~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 498 ------------------------KIIVFSDNVFALKEYAIKLG---K--PFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred ------------------------eEEEEeCCHHHHHHHHHHcC---C--ceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 99999999999888888773 3 458999999999999999997767888887
Q ss_pred ecCCCccccccccCCEEEEecCCC-CCChHHHHhHhhhccCCcc-----cEEEEEEEeCCCHHHHHHH
Q 001680 935 SLKAGNLGLNMVAASHVILLDLWW-NPTTEDQAVDRAHRIGQTR-----PVTVTRLTIRDTVEDRILK 996 (1032)
Q Consensus 935 Stkagg~GLNL~~A~~VI~~Dp~W-Np~~e~QAigRi~RiGQ~k-----~V~VyrLi~~~TiEe~I~~ 996 (1032)
| ++|++|+||+.|++||++++++ ++..+.||+||+.|.+..+ +.++|.|+++||.|+..-.
T Consensus 549 S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 549 S-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred e-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 7 9999999999999999999986 9999999999999998764 4799999999999998743
No 22
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=382.14 Aligned_cols=398 Identities=27% Similarity=0.392 Sum_probs=302.4
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcC
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 377 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1032)
..|.|||.+|++|+......+. -+|||||||||||++++.++......
T Consensus 294 g~L~~~qleGln~L~~~ws~~~---~~ilADEmgLgktVqsi~fl~sl~~~----------------------------- 341 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGV---DAILADEMGLGKTVQSIVFLYSLPKE----------------------------- 341 (696)
T ss_pred ccccccchhhhhhhhcccccCC---CcccchhhcCCceeeEEEEEeecccc-----------------------------
Confidence 5799999999999998776553 38999999999999999887553221
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCC
Q 001680 378 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 457 (1032)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~ 457 (1032)
....++.||++|.+.+-+|.+|+..|.+ .+.+..|+|....+.......
T Consensus 342 ----------------------------~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirepe 390 (696)
T KOG0383|consen 342 ----------------------------IHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREPE 390 (696)
T ss_pred ----------------------------cCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhccc
Confidence 0222568999999999999999999988 688888999775442211100
Q ss_pred C---c-EEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCc
Q 001680 458 Y---D-VVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 533 (1032)
Q Consensus 458 ~---d-VVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~ 533 (1032)
+ | -+.++-.+... ++. ...+....-......+.+...+.
T Consensus 391 ~s~ed~~~~~~~~i~~~---------------------------------~~~----s~~k~~vl~~s~~~~~~~~~il~ 433 (696)
T KOG0383|consen 391 FSFEDSSIKSSPKISEM---------------------------------KTE----SSAKFHVLLPSYETIEIDQSILF 433 (696)
T ss_pred ccccccccccCCccccc---------------------------------cch----hhcccccCCCchhhcccCHHHHh
Confidence 0 0 00000000000 000 00011111111222333445688
Q ss_pred cccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhccccccCch
Q 001680 534 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL 613 (1032)
Q Consensus 534 ~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~pi~~~~~ 613 (1032)
.+.|..+|+||+|.++|..+...+.+......++++|||||.+|++.+|+++|+||.++.|.+..+|...|..- ...
T Consensus 434 ~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~ 510 (696)
T KOG0383|consen 434 SVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCE 510 (696)
T ss_pred hhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---hHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999998877532 234
Q ss_pred hHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 001680 614 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 693 (1032)
Q Consensus 614 ~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~ 693 (1032)
...+.|+.++.+.|+||.|.++++ .+|+|++-++.+.+++-|.+.|+.++..-...+.. ..+...++.
T Consensus 511 ~~~~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~~~~~s~~n 578 (696)
T KOG0383|consen 511 EQIKKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------GVHQYSLLN 578 (696)
T ss_pred HHHHhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------cchhHHHHH
Confidence 667889999999999999999997 69999999999999999999999987754443332 234456678
Q ss_pred HHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccccccCcccchhhhhhh
Q 001680 694 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEY 773 (1032)
Q Consensus 694 ~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~ 773 (1032)
.++.||+.|+||.++........ ....+...+
T Consensus 579 ~~mel~K~~~hpy~~~~~e~~~~--------------~~~~~~~~l---------------------------------- 610 (696)
T KOG0383|consen 579 IVMELRKQCNHPYLSPLEEPLEE--------------NGEYLGSAL---------------------------------- 610 (696)
T ss_pred HHHHHHHhhcCcccCcccccccc--------------chHHHHHHH----------------------------------
Confidence 89999999999998764111000 000000000
Q ss_pred ccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHHhhhcccccch
Q 001680 774 ITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSI 853 (1032)
Q Consensus 774 ~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~ 853 (1032)
...+.|+..|...++++...++
T Consensus 611 ------------------------------------------------------~k~~~k~~~l~~~~~~l~~~gh---- 632 (696)
T KOG0383|consen 611 ------------------------------------------------------IKASGKLTLLLKMLKKLKSSGH---- 632 (696)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHHHHHhcch----
Confidence 0147788889999988888776
Q ss_pred hhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhcc-CccccEE
Q 001680 854 VEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREITVM 932 (1032)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~-~~~~~VL 932 (1032)
||+||+|++.++|+|+.++...+ .|.++||..+..+|+.+|.+||. +..-.+|
T Consensus 633 -------------------------rvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cf 686 (696)
T KOG0383|consen 633 -------------------------RVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCF 686 (696)
T ss_pred -------------------------hhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEE
Confidence 99999999999999999999999 99999999999999999999995 4567899
Q ss_pred EeecCCCccc
Q 001680 933 LMSLKAGNLG 942 (1032)
Q Consensus 933 LlStkagg~G 942 (1032)
|+||+|||.|
T Consensus 687 llstra~g~g 696 (696)
T KOG0383|consen 687 LLSTRAGGLG 696 (696)
T ss_pred EeecccccCC
Confidence 9999999987
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.4e-32 Score=344.51 Aligned_cols=463 Identities=17% Similarity=0.190 Sum_probs=282.2
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCc
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
..++|+||++.+...+.. ++|+++++|+|||++++.++.....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--------n~lv~~ptG~GKT~~a~~~i~~~l~----------------------------- 55 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--------NTLVVLPTGLGKTAIALLVIAERLH----------------------------- 55 (773)
T ss_pred cCCccHHHHHHHHHHhcC--------CeEEEcCCCccHHHHHHHHHHHHHH-----------------------------
Confidence 347999999998887642 4899999999999998877755321
Q ss_pred CcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-ccc
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVE 454 (1032)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~-~~~ 454 (1032)
.+.+++|||||. .|+.||..++.+++... ..++.+++|...... ...
T Consensus 56 ------------------------------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~r~~~ 104 (773)
T PRK13766 56 ------------------------------KKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIVVFTGEVSPEKRAEL 104 (773)
T ss_pred ------------------------------hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEEEEeCCCCHHHHHHH
Confidence 223569999997 68899999999987532 357888888654332 233
Q ss_pred cCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCcc
Q 001680 455 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 534 (1032)
Q Consensus 455 l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~ 534 (1032)
+..++|+++|+.++.++... +.+..
T Consensus 105 ~~~~~iiv~T~~~l~~~l~~-------------------------------------------------------~~~~~ 129 (773)
T PRK13766 105 WEKAKVIVATPQVIENDLIA-------------------------------------------------------GRISL 129 (773)
T ss_pred HhCCCEEEECHHHHHHHHHc-------------------------------------------------------CCCCh
Confidence 46789999999998765311 01223
Q ss_pred ccccEEEEecCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHH----HHHhccc
Q 001680 535 VGWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSF----YSTIKIP 607 (1032)
Q Consensus 535 ~~w~rVIlDEAH~iKN~~S~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F----~~~~~~p 607 (1032)
-.|++|||||||++.+..+....+-... +..++++|||||..+ ...+..++.-|.......+..| ...+..+
T Consensus 130 ~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~ 208 (773)
T PRK13766 130 EDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKV 208 (773)
T ss_pred hhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccc
Confidence 4588999999999987655443332222 345699999999876 5667777776654433222211 1111111
Q ss_pred ----cccCchhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001680 608 ----ISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGT 683 (1032)
Q Consensus 608 ----i~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~ 683 (1032)
+.-.-...+..++.++..++.++.+.....| .+++....+...++...+..++..+.. ...
T Consensus 209 ~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~----~~~~~~~~~~~~~l~~~~~~~~~~l~~-----------~~~ 273 (773)
T PRK13766 209 KIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG----VIVSISPDVSKKELLGLQKKLQQEIAN-----------DDS 273 (773)
T ss_pred eeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC----CcccCCCCcCHHHHHHHHHHHHHHhhc-----------Cch
Confidence 0111234566788888888877766533221 122221111111222222222221111 000
Q ss_pred CcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccccccCc
Q 001680 684 VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGH 763 (1032)
Q Consensus 684 ~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH 763 (1032)
.......++..++.++++.. ++.. .....+..++..+........ ....
T Consensus 274 ~~~~~~~~~~~~~~l~~~~~---~l~~----------------~~~~~~~~y~~~l~~~~~~~~-----~~~~------- 322 (773)
T PRK13766 274 EGYEAISILAEAMKLRHAVE---LLET----------------QGVEALRRYLERLREEARSSG-----GSKA------- 322 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHH----------------hCHHHHHHHHHHHHhhccccC-----CcHH-------
Confidence 00111223333344443211 1100 000111111111110000000 0000
Q ss_pred ccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHH
Q 001680 764 VFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHT 843 (1032)
Q Consensus 764 ~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~ 843 (1032)
. ..++.......... .........+|+..|.++|.+
T Consensus 323 -------~---------------------~~l~~~~~~~~~~~----------------~~~~~~~~~pK~~~L~~il~~ 358 (773)
T PRK13766 323 -------S---------------------KRLVEDPRFRKAVR----------------KAKELDIEHPKLEKLREIVKE 358 (773)
T ss_pred -------H---------------------HHHHhCHHHHHHHH----------------HHHhcccCChHHHHHHHHHHH
Confidence 0 00000000000000 000001136899999999988
Q ss_pred hhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCC--------CCHHH
Q 001680 844 QCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT--------MSLPA 915 (1032)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs--------~s~~e 915 (1032)
...... +.|+||||++..+++.|.+.|...|+.+..++|. ++..+
T Consensus 359 ~~~~~~---------------------------~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~ 411 (773)
T PRK13766 359 QLGKNP---------------------------DSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKE 411 (773)
T ss_pred HHhcCC---------------------------CCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHH
Confidence 764221 3499999999999999999999999999999987 88899
Q ss_pred HHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHH
Q 001680 916 RDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 995 (1032)
Q Consensus 916 R~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~ 995 (1032)
|.+++++|+++ ++.||+ +|.++++|+|++.+++||+|||+||+..+.|++||++|.|+ +.||.|+.++|+||.+|
T Consensus 412 r~~~~~~F~~g-~~~vLv-aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 412 QIEILDKFRAG-EFNVLV-STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYY 486 (773)
T ss_pred HHHHHHHHHcC-CCCEEE-ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHH
Confidence 99999999976 666655 66899999999999999999999999999998888888775 67899999999999998
Q ss_pred HHHHHHHHHH
Q 001680 996 KLQDDKRKMV 1005 (1032)
Q Consensus 996 ~lq~~K~~l~ 1005 (1032)
....+|.+.+
T Consensus 487 ~~~~~ke~~~ 496 (773)
T PRK13766 487 WSSRRKEKKM 496 (773)
T ss_pred HHhhHHHHHH
Confidence 7776665554
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=7.1e-25 Score=245.04 Aligned_cols=460 Identities=19% Similarity=0.183 Sum_probs=282.5
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcC
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 377 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1032)
++-|.||..-++-.+.+ ..+++-.+|||||+.|+.+|+.....
T Consensus 14 ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l~~----------------------------- 56 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRLRW----------------------------- 56 (542)
T ss_pred ccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHHHh-----------------------------
Confidence 46889999988877754 26999999999999988877643211
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCceEEEcCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Ccccc
Q 001680 378 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVEL 455 (1032)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~-~~~~l 455 (1032)
.+ +.+|+++|+ .|+.|-..-+.+.+.-. ...+..+.|.-+.. ....+
T Consensus 57 -----------------------------~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~i~~ltGev~p~~R~~~w 105 (542)
T COG1111 57 -----------------------------FG-GKVLFLAPTKPLVLQHAEFCRKVTGIP-EDEIAALTGEVRPEEREELW 105 (542)
T ss_pred -----------------------------cC-CeEEEecCCchHHHHHHHHHHHHhCCC-hhheeeecCCCChHHHHHHH
Confidence 11 258999995 59999999999887643 56788888876554 34567
Q ss_pred CCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccc
Q 001680 456 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 535 (1032)
Q Consensus 456 ~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~~ 535 (1032)
.+..|++.|.+++.+|... +.+..-
T Consensus 106 ~~~kVfvaTPQvveNDl~~-------------------------------------------------------Grid~~ 130 (542)
T COG1111 106 AKKKVFVATPQVVENDLKA-------------------------------------------------------GRIDLD 130 (542)
T ss_pred hhCCEEEeccHHHHhHHhc-------------------------------------------------------CccChH
Confidence 8899999999999987532 224444
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhccccccCc
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNS 612 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~pi~~~~ 612 (1032)
.+.+||+||||+.-+..+.+.-+=..+ +..+.++||||| -++.+.+-..+.=|+.+..-
T Consensus 131 dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~ve----------------- 192 (542)
T COG1111 131 DVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVE----------------- 192 (542)
T ss_pred HceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEE-----------------
Confidence 578899999999866555544433333 334689999999 34445555555544443211
Q ss_pred hhHHHHHHHHHHHHHhhhccCc--cccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcch---
Q 001680 613 LHGYKKLQAVLRAIMLRRTKGT--FIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN--- 687 (1032)
Q Consensus 613 ~~~~~~L~~~L~~~~lRRtk~~--v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~--- 687 (1032)
-||-.+ |. -.+-.+.++.+.|+++++-.++-+.+..-....++...+.|-....
T Consensus 193 ----------------vrTE~d~DV~-----~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~ 251 (542)
T COG1111 193 ----------------VRTEEDPDVR-----PYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPV 251 (542)
T ss_pred ----------------EecCCCccHH-----HhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcc
Confidence 111111 11 1344555666666666665555544444444444444333322111
Q ss_pred -HHHHHHHH-HHHHhhcCcc-cccccccc-cccc--cchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCcccccc
Q 001680 688 -YANILLML-LRLRQACDHP-LLVKEYDF-DSVG--KISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMC 761 (1032)
Q Consensus 688 -~~~iL~~L-~rLRq~c~hP-~L~~~~~~-~~~~--~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~C 761 (1032)
...++.+. .++....... .+...... ...- .-..|+.....-+.+..++.+++.....-..
T Consensus 252 ~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s------------- 318 (542)
T COG1111 252 SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS------------- 318 (542)
T ss_pred cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch-------------
Confidence 11111111 1111111100 00000000 0000 0001122222223334444444311000000
Q ss_pred CcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHH
Q 001680 762 GHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDIL 841 (1032)
Q Consensus 762 gH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL 841 (1032)
.-...+-.+..+... +..+. .........+|++.+.++|
T Consensus 319 -----------------------k~a~~l~~d~~~~~a-l~~~~-----------------~~~~~~v~HPKl~~l~eil 357 (542)
T COG1111 319 -----------------------KAAKSLLADPYFKRA-LRLLI-----------------RADESGVEHPKLEKLREIL 357 (542)
T ss_pred -----------------------HHHHHHhcChhhHHH-HHHHH-----------------HhccccCCCccHHHHHHHH
Confidence 000000000000000 00000 0012234678999999999
Q ss_pred HHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEE-eeCC--------CCC
Q 001680 842 HTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYR-RLDG--------TMS 912 (1032)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~-~l~G--------s~s 912 (1032)
.+..+... +.++|||++|+++++.|...|.+.|+... ++-| +|+
T Consensus 358 ke~~~k~~---------------------------~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMs 410 (542)
T COG1111 358 KEQLEKNG---------------------------DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMS 410 (542)
T ss_pred HHHHhcCC---------------------------CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccC
Confidence 99886543 34999999999999999999999988775 5555 599
Q ss_pred HHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHH
Q 001680 913 LPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 992 (1032)
Q Consensus 913 ~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe 992 (1032)
+++..++|++|+++ ++.||+ +|.+|-+||++...|.||+|||.-+|....||.||.+|- +.=.||-|+++||-|+
T Consensus 411 QkeQ~eiI~~Fr~G-e~nVLV-aTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrde 485 (542)
T COG1111 411 QKEQKEIIDQFRKG-EYNVLV-ATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDE 485 (542)
T ss_pred HHHHHHHHHHHhcC-CceEEE-EcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHH
Confidence 99999999999976 777766 669999999999999999999999999999999988774 6778888999999999
Q ss_pred HHHHHHHHHHHHH
Q 001680 993 RILKLQDDKRKMV 1005 (1032)
Q Consensus 993 ~I~~lq~~K~~l~ 1005 (1032)
.-+....+|.+.+
T Consensus 486 ayy~~s~rke~~m 498 (542)
T COG1111 486 AYYYSSRRKEQKM 498 (542)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777665544
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=3.4e-25 Score=264.88 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=100.9
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||+..+..++.|.+.|...|+++..++|+++.++|.++++.|+++ ...|||.|.+..++|+|+...++||+++|.-
T Consensus 346 ~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~ 424 (501)
T PHA02558 346 NTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIKNLHHVIFAHPSK 424 (501)
T ss_pred CEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccccccEEEEecCCc
Confidence 889999999999999999999999999999999999999999999854 6678888889999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCccc-EEEEEEEeCCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRP-VTVTRLTIRDT 989 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~-V~VyrLi~~~T 989 (1032)
+...+.|++||++|.|..|. +.||.|+-.-.
T Consensus 425 s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 425 SKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred chhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999998764 89999986443
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=1.2e-24 Score=255.47 Aligned_cols=367 Identities=21% Similarity=0.227 Sum_probs=257.2
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCc
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
...|||||.+++.-+...... .+.|++.-.+|.|||+.++.+|....
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~~------------------------------ 80 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAELK------------------------------ 80 (442)
T ss_pred CCCCcHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHHHHHHHHHhc------------------------------
Confidence 557999999999877653221 24589999999999999999886532
Q ss_pred CcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCcccc
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 455 (1032)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l 455 (1032)
..+|||||.. |+.||.+.+.+++.. .-.+-.+.|.......
T Consensus 81 ---------------------------------~~~Lvlv~~~~L~~Qw~~~~~~~~~~--~~~~g~~~~~~~~~~~--- 122 (442)
T COG1061 81 ---------------------------------RSTLVLVPTKELLDQWAEALKKFLLL--NDEIGIYGGGEKELEP--- 122 (442)
T ss_pred ---------------------------------CCEEEEECcHHHHHHHHHHHHHhcCC--ccccceecCceeccCC---
Confidence 1299999976 789999888888753 1245556665433222
Q ss_pred CCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccc
Q 001680 456 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 535 (1032)
Q Consensus 456 ~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~~ 535 (1032)
.+|++.||+++.+.... ..+..-
T Consensus 123 --~~i~vat~qtl~~~~~l-------------------------------------------------------~~~~~~ 145 (442)
T COG1061 123 --AKVTVATVQTLARRQLL-------------------------------------------------------DEFLGN 145 (442)
T ss_pred --CcEEEEEhHHHhhhhhh-------------------------------------------------------hhhccc
Confidence 57999999999864100 012333
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhcccCc-EEEEeccCCCCChHHHHHHHHHHccCCcchhHHHHHHhccccccCchh
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSLRAKR-RWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLH 614 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~-r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~~~F~~~~~~pi~~~~~~ 614 (1032)
.|++||+||+|++...... +.+..+.+.+ ++.|||||....-..+.-++.++++-.|...
T Consensus 146 ~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~----------------- 206 (442)
T COG1061 146 EFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVS----------------- 206 (442)
T ss_pred ccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecC-----------------
Confidence 6999999999999765433 3344456666 9999999985544455555555543221110
Q ss_pred HHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q 001680 615 GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 694 (1032)
Q Consensus 615 ~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~ 694 (1032)
+..++ .+| .|.|.....+.+.++..+...|................
T Consensus 207 ----~~~li------------~~g----~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-------------- 252 (442)
T COG1061 207 ----LKELI------------DEG----YLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-------------- 252 (442)
T ss_pred ----HHHHH------------hCC----CccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh--------------
Confidence 00011 111 58888889999999999998887654432222110000
Q ss_pred HHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccccccCcccchhhhhhhc
Q 001680 695 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYI 774 (1032)
Q Consensus 695 L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~ 774 (1032)
++. ......
T Consensus 253 ---~~~--------------------------------~~~~~~------------------------------------ 261 (442)
T COG1061 253 ---LRA--------------------------------ENEARR------------------------------------ 261 (442)
T ss_pred ---hhH--------------------------------HHHHHH------------------------------------
Confidence 000 000000
Q ss_pred cCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHHhhhcccccchh
Q 001680 775 TGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 854 (1032)
Q Consensus 775 ~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~ 854 (1032)
.......|+..+..++..+. .+
T Consensus 262 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~------ 283 (442)
T COG1061 262 ---------------------------------------------------IAIASERKIAAVRGLLLKHA-RG------ 283 (442)
T ss_pred ---------------------------------------------------HhhccHHHHHHHHHHHHHhc-CC------
Confidence 00012456777777776654 23
Q ss_pred hhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEe
Q 001680 855 EIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLM 934 (1032)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLl 934 (1032)
.+++||+........+...+...|+ +..++|.++..+|.++++.|..+. +.+ |+
T Consensus 284 -----------------------~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~-lv 337 (442)
T COG1061 284 -----------------------DKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKV-LV 337 (442)
T ss_pred -----------------------CcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCE-EE
Confidence 3999999999999999999999988 889999999999999999999864 555 55
Q ss_pred ecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhcc-CCccc--EEEEEEEeCCCHHHHHHHHHH
Q 001680 935 SLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI-GQTRP--VTVTRLTIRDTVEDRILKLQD 999 (1032)
Q Consensus 935 Stkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~Ri-GQ~k~--V~VyrLi~~~TiEe~I~~lq~ 999 (1032)
+.+++.+|+++..|+.+|++.|.-++..+.|++||+.|. ..+.. +..|-++..++.+..+.....
T Consensus 338 ~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 338 TVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred EeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 669999999999999999999999999999999999994 44444 777888889998888766554
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.4e-21 Score=215.64 Aligned_cols=357 Identities=21% Similarity=0.263 Sum_probs=244.1
Q ss_pred CCccCCCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhcccccccc
Q 001680 285 PKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEA 364 (1032)
Q Consensus 285 ~~~~~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~ 364 (1032)
|+...++-|. ..|||||...+..|.-..+ .+.||+.-..|.|||+..+..+...
T Consensus 291 pdl~idLKPs---t~iRpYQEksL~KMFGNgR----ARSGiIVLPCGAGKtLVGvTAa~ti------------------- 344 (776)
T KOG1123|consen 291 PDLDIDLKPS---TQIRPYQEKSLSKMFGNGR----ARSGIIVLPCGAGKTLVGVTAACTI------------------- 344 (776)
T ss_pred CCCCcCcCcc---cccCchHHHHHHHHhCCCc----ccCceEEEecCCCCceeeeeeeeee-------------------
Confidence 4555555554 3799999999999985433 4779999999999999877665332
Q ss_pred ccCCCCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhh-HHHHHHHHHHhCCCCCCcEEEEE
Q 001680 365 LNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIY 443 (1032)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sL-l~QW~~Ei~k~~~~~~~l~vlv~ 443 (1032)
.+..||+|-.+| +.||+.+|..|..-. .-.+..|
T Consensus 345 --------------------------------------------kK~clvLcts~VSVeQWkqQfk~wsti~-d~~i~rF 379 (776)
T KOG1123|consen 345 --------------------------------------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ-DDQICRF 379 (776)
T ss_pred --------------------------------------------cccEEEEecCccCHHHHHHHHHhhcccC-ccceEEe
Confidence 134799999885 799999999997654 4456666
Q ss_pred eCCCCCCCccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCC
Q 001680 444 HGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNS 523 (1032)
Q Consensus 444 ~G~~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~ 523 (1032)
....+.+. -....||||||+++..--.... ..++
T Consensus 380 Tsd~Ke~~---~~~~gvvvsTYsMva~t~kRS~------eaek------------------------------------- 413 (776)
T KOG1123|consen 380 TSDAKERF---PSGAGVVVTTYSMVAYTGKRSH------EAEK------------------------------------- 413 (776)
T ss_pred eccccccC---CCCCcEEEEeeehhhhcccccH------HHHH-------------------------------------
Confidence 66554432 2467899999999875321100 0000
Q ss_pred CcccCCCCCccccccEEEEecCcccCCcccHHHHHHH-hcccCcEEEEeccCCCC--ChHHHHHHHHHH-ccCCcc-hhH
Q 001680 524 SIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACC-SLRAKRRWCLSGTPIQN--SIDDLYSYFRFL-KYDPYA-VYK 598 (1032)
Q Consensus 524 ~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~-~L~a~~r~lLTGTPi~N--~l~DL~sll~fL-~p~~~~-~~~ 598 (1032)
....|....|+++|+||.|.+- .++.+-+. -+++..++.||||-+.. .+.|| +|| +|..|. +|.
T Consensus 414 ----~m~~l~~~EWGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvREDdKI~DL----NFLIGPKlYEAnWm 482 (776)
T KOG1123|consen 414 ----IMDFLRGREWGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVREDDKITDL----NFLIGPKLYEANWM 482 (776)
T ss_pred ----HHHHHhcCeeeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeecccccccc----ceeecchhhhccHH
Confidence 0112667789999999999983 34444443 44888999999998754 34553 344 444332 222
Q ss_pred HHHHHhccccccCchhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 001680 599 SFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF 678 (1032)
Q Consensus 599 ~F~~~~~~pi~~~~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~ 678 (1032)
+..+ +. .+....---|+|+||++-...|-... .++
T Consensus 483 dL~~-----------------------------kG---------hIA~VqCaEVWCpMt~eFy~eYL~~~--t~k----- 517 (776)
T KOG1123|consen 483 DLQK-----------------------------KG---------HIAKVQCAEVWCPMTPEFYREYLREN--TRK----- 517 (776)
T ss_pred HHHh-----------------------------CC---------ceeEEeeeeeecCCCHHHHHHHHhhh--hhh-----
Confidence 2111 11 12223344689999996444443210 000
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccc
Q 001680 679 ADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVV 758 (1032)
Q Consensus 679 ~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vv 758 (1032)
|++ |.
T Consensus 518 --------------------r~l-----Ly-------------------------------------------------- 522 (776)
T KOG1123|consen 518 --------------------RML-----LY-------------------------------------------------- 522 (776)
T ss_pred --------------------hhe-----ee--------------------------------------------------
Confidence 000 00
Q ss_pred cccCcccchhhhhhhccCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCccccccCCCCccccchhHHHHH
Q 001680 759 TMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVL 838 (1032)
Q Consensus 759 t~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~Ll 838 (1032)
...-.|++++.
T Consensus 523 ---------------------------------------------------------------------vMNP~KFraCq 533 (776)
T KOG1123|consen 523 ---------------------------------------------------------------------VMNPNKFRACQ 533 (776)
T ss_pred ---------------------------------------------------------------------ecCcchhHHHH
Confidence 00235788887
Q ss_pred HHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHH
Q 001680 839 DILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDR 918 (1032)
Q Consensus 839 elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~ 918 (1032)
=+|+-+...+. |+|||+...-.|....-.| |-+ .|.|.+++.+|.+
T Consensus 534 fLI~~HE~RgD-----------------------------KiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ 579 (776)
T KOG1123|consen 534 FLIKFHERRGD-----------------------------KIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMK 579 (776)
T ss_pred HHHHHHHhcCC-----------------------------eEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHH
Confidence 78877766555 9999998775555444444 334 4789999999999
Q ss_pred HHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCC-ChHHHHhHhhhccCCc----ccEEEEEEEeCCCHHHH
Q 001680 919 AVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNP-TTEDQAVDRAHRIGQT----RPVTVTRLTIRDTVEDR 993 (1032)
Q Consensus 919 ~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp-~~e~QAigRi~RiGQ~----k~V~VyrLi~~~TiEe~ 993 (1032)
+++.|+.++.+.-+++| ++|.+.++|..|+.+|-+....-. ..+.||.|||-|--.. -++..|-|+.+||.|-.
T Consensus 580 ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 580 ILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 99999999999988888 999999999999999999888654 5677999999996422 24899999999998854
No 28
>PTZ00110 helicase; Provisional
Probab=99.88 E-value=9.9e-21 Score=228.17 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=95.9
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
|+|||++....++.|...|...|+....++|+++.++|.+++++|+++ .+.| |++|+++++|||+..+++||+||+|+
T Consensus 379 k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~I-LVaTdv~~rGIDi~~v~~VI~~d~P~ 456 (545)
T PTZ00110 379 KILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSPI-MIATDVASRGLDVKDVKYVINFDFPN 456 (545)
T ss_pred eEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCcE-EEEcchhhcCCCcccCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999975 5666 45779999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
++..+.||+||+.|.|.+-. ++.|+..+
T Consensus 457 s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 457 QIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999998644 34456555
No 29
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.86 E-value=2.1e-19 Score=212.59 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=112.2
Q ss_pred ccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhc---CceEE
Q 001680 829 YISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH---CIQYR 905 (1032)
Q Consensus 829 ~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~---gi~~~ 905 (1032)
...+|+..+.+.|.+...... ..++|||+.++..++.|..+|.+. |++..
T Consensus 392 ~~npkle~l~~~l~e~f~~~~---------------------------dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~ 444 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNP---------------------------DSRTIIFVETRESALALKKWLLQLHELGIKAE 444 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCC---------------------------CccEEEEEehHHHHHHHHHHHHhhhhcccccc
Confidence 468899999999999887443 449999999999999999998832 55554
Q ss_pred eeCC--------CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcc
Q 001680 906 RLDG--------TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 977 (1032)
Q Consensus 906 ~l~G--------s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k 977 (1032)
.+.| +|++.+..++++.|+++ ++.||+ +|.+|-|||+...||-||-||..-||..+.||.|| +| .+
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~NvLV-ATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ 518 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDG-EINVLV-ATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---AR 518 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCC-CccEEE-EecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---cc
Confidence 4544 68889999999999974 778776 55999999999999999999999999999999999 55 45
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhh
Q 001680 978 PVTVTRLTIRDTVEDRILKLQDDKRKMVASAF 1009 (1032)
Q Consensus 978 ~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~ 1009 (1032)
.=+++-+.. +.-+-..-..+..|+.+....+
T Consensus 519 ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~i 549 (746)
T KOG0354|consen 519 NSKCVLLTT-GSEVIEFERNNLAKEKLMNQTI 549 (746)
T ss_pred CCeEEEEEc-chhHHHHHHHHHhHHHHHHHHH
Confidence 444444455 4333333334455555555444
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.85 E-value=1.5e-19 Score=214.98 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=95.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||++....++.+...|...|+.+..++|++++.+|+++++.|.++ .++||| +|++++.|||+..+++||+||+|.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLV-aTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLV-ATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEE-EecccccccchhcCCeEEEecCCC
Confidence 899999999999999999999999999999999999999999999965 677765 569999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
++..+.||+||+.|.|+.-. .+.|+..+
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 99999999999999997643 44456554
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.85 E-value=2.1e-19 Score=212.36 Aligned_cols=101 Identities=23% Similarity=0.334 Sum_probs=93.1
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||+.....++.|...|...|+....++|+++..+|..+++.|+++ .+.||| +|++++.|+|+..+++||+||+|+
T Consensus 247 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~vLV-aTd~~~~GiDip~v~~VI~~d~p~ 324 (434)
T PRK11192 247 RSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNVLV-ATDVAARGIDIDDVSHVINFDMPR 324 (434)
T ss_pred eEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcEEE-EccccccCccCCCCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999999965 777766 559999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEE
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~V 981 (1032)
++..+.|++||+.|.|..-.+.+
T Consensus 325 s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 325 SADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CHHHHhhcccccccCCCCceEEE
Confidence 99999999999999998755443
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=2.1e-19 Score=213.90 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=94.2
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||+......+.+...|...|+.+..++|+++.++|.++++.|..+ .++||+ +|.+.|.|+|+...++||++++|.
T Consensus 228 ~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~vLV-aT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 228 SGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQVVV-ATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred ceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCCcccceEEEEeCCCC
Confidence 679999999999999999999999999999999999999999999965 777766 558999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEE
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVT 982 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~Vy 982 (1032)
++..+.|++||++|.|+...+.++
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999988765554
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.84 E-value=2.6e-19 Score=212.38 Aligned_cols=106 Identities=25% Similarity=0.342 Sum_probs=95.2
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||++.....+.|...|...|+....++|.++.++|.++++.|+++ .++||| +|++++.|||+...++||+||+|.
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~iLV-aTdv~~rGiDip~v~~VI~~~~P~ 324 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DIRVLV-ATDIAARGLDIEELPHVVNYELPN 324 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EccHHhcCCCcccCCEEEEeCCCC
Confidence 899999999999999999999999999999999999999999999975 677766 669999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
++..+.|++||+.|.|++-.+.+ |+..+
T Consensus 325 ~~~~yvqR~GRaGR~g~~G~ai~--l~~~~ 352 (456)
T PRK10590 325 VPEDYVHRIGRTGRAAATGEALS--LVCVD 352 (456)
T ss_pred CHHHhhhhccccccCCCCeeEEE--EecHH
Confidence 99999999999999998754333 44443
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.84 E-value=4.8e-19 Score=208.51 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=95.1
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
|+|||++....++.|...|...|+.+..++|+++.++|.+++++|+++ ++.||+ +|++++.|||+..+++||+||+|+
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g-~~~vLV-aTdv~~rGiDip~v~~VI~~d~P~ 334 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG-DLDILV-ATDVAARGLHIPAVTHVFNYDLPD 334 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-CCcEEE-EechhhcCCCccccCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999975 777766 559999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
++..+.|++||+.|.|+.-. ++-|+.+
T Consensus 335 s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 335 DCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred chhheEeccccccCCCCCee--EEEEeCH
Confidence 99999999999999997643 3445544
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.84 E-value=6e-19 Score=210.58 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=95.1
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
|+|||++....++.|...|...|+.+..++|.++.++|.++++.|+++ +++||+ +|++++.|||+..+++||+||+|+
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~vLv-aT~~l~~GIDi~~v~~VI~~~~P~ 414 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRVLV-ATDVAGRGIHIDGISHVINFTLPE 414 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcEEE-EccccccCCcccCCCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999965 677666 569999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
++..+.|++||++|.|+.-. ++.|+..+
T Consensus 415 s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 415 DPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 99999999999999998643 33344443
No 36
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.84 E-value=5.1e-19 Score=212.70 Aligned_cols=106 Identities=20% Similarity=0.309 Sum_probs=93.9
Q ss_pred eEEEEeccHHHHHHHHHHhhh-cCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQ-HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 957 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~-~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~ 957 (1032)
++|||++....++.|...|.. .|+.+..++|+++.++|.++++.|.++ +++||+ +|++++.|||+..+++||+||+|
T Consensus 369 ~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~~ILV-aTdvl~rGiDip~v~~VI~~d~P 446 (518)
T PLN00206 369 PAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EVPVIV-ATGVLGRGVDLLRVRQVIIFDMP 446 (518)
T ss_pred CEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CCCEEE-EecHhhccCCcccCCEEEEeCCC
Confidence 899999999999999999975 599999999999999999999999975 677765 66999999999999999999999
Q ss_pred CCCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 958 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 958 WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
.++..+.|++||++|.|..- .++.|+..+
T Consensus 447 ~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 447 NTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred CCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 99999999999999999753 344456544
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.83 E-value=1.1e-18 Score=212.39 Aligned_cols=98 Identities=16% Similarity=0.291 Sum_probs=91.3
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||+.....++.|...|...|+....++|.+++.+|.+++++|.++ .+.|| ++|++++.|||+..+++||+||+|.
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~IL-VATdv~arGIDip~V~~VI~~d~P~ 324 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDIL-IATDVAARGLDVERISLVVNYDIPM 324 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEE-EEcchHhcCCCcccCCEEEEeCCCC
Confidence 899999999999999999999999999999999999999999999965 66665 5679999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCccc
Q 001680 959 NPTTEDQAVDRAHRIGQTRP 978 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~ 978 (1032)
++..+.|++||+.|.|..-.
T Consensus 325 ~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 325 DSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred CHHHHHHHhccccCCCCcce
Confidence 99999999999999997654
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.83 E-value=9.4e-19 Score=211.82 Aligned_cols=105 Identities=16% Similarity=0.330 Sum_probs=94.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||++....++.|.+.|...|+.+..++|.++..+|.++++.|+++ ++.||| +|++++.|||+...++||+||+||
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G-~~~VLV-aTdv~arGIDip~V~~VInyd~P~ 336 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG-QLEILV-ATDVAARGLHIDGVKYVYNYDLPF 336 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-EehhhhcCCCccCCCEEEEcCCCC
Confidence 899999999999999999999999999999999999999999999965 666766 559999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
++..+.|++||+.|.|..-.+ +.|+..
T Consensus 337 s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 337 DAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred CHHHHhhhhcccccCCCCceE--EEEecH
Confidence 999999999999999986543 334443
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.81 E-value=1.5e-18 Score=212.11 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=92.0
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||+.....++.+...|...|+.+..++|+++.++|.++++.|..+ .+.||+ +|.+.|.|+|+...++||+||+|.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VLV-aT~a~~~GIDip~V~~VI~~d~P~ 315 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIVV-ATVAFGMGINKPNVRFVVHFDIPR 315 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEEE-EechhhccCCCCCcCEEEEeCCCC
Confidence 889999999999999999999999999999999999999999999965 667665 568999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccE
Q 001680 959 NPTTEDQAVDRAHRIGQTRPV 979 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V 979 (1032)
+...+.|++||++|.|....+
T Consensus 316 s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 316 NIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred CHHHHHHHhhhccCCCCCceE
Confidence 999999999999999976553
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.81 E-value=1.5e-18 Score=212.57 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=92.3
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
+.|||+......+.+...|...|+.+..++|+++.++|..+++.|..+ .+.||+ +|.+.|.|+|+..+++||+|++|.
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vlV-aT~a~~~GID~p~v~~VI~~~~p~ 303 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVMV-ATNAFGMGIDKPNVRFVIHYDMPG 303 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCcCCCCCEEEEcCCCC
Confidence 889999999999999999999999999999999999999999999976 566655 669999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEE
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVT 980 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~ 980 (1032)
+...+.|++||++|.|+...+.
T Consensus 304 s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 304 NLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CHHHHhhhhccccCCCCCceEE
Confidence 9999999999999999766543
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.81 E-value=3.8e-18 Score=199.66 Aligned_cols=107 Identities=19% Similarity=0.322 Sum_probs=95.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||+.....++.+...|...++.+..++|+++.++|..+++.|+++ .++||+ +|.+.++|+|+..+++||++|++.
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLv-aT~~l~~GiDip~v~~VI~~~~p~ 346 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLI-TTDLLARGIDVQQVSLVINYDLPA 346 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-EcccccCCcCcccCCEEEEECCCC
Confidence 899999999999999999999999999999999999999999999965 677665 669999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 989 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~T 989 (1032)
++..+.|++||++|.|.. -.++.|+..+.
T Consensus 347 s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred CHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 999999999999999864 34455665553
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.81 E-value=3.8e-18 Score=209.46 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=68.1
Q ss_pred cCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC-CCChHHHHhHhhhccCCccc
Q 001680 900 HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-NPTTEDQAVDRAHRIGQTRP 978 (1032)
Q Consensus 900 ~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W-Np~~e~QAigRi~RiGQ~k~ 978 (1032)
.++.+..++|.|+.++|.+++++|.++ +..||+ +|.+.++|+|+..++.||+++++. +.+.+.|++||++|-|..-.
T Consensus 481 ~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 481 PKYNVGLLHGRMKSDEKEAVMEEFREG-EVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 367889999999999999999999975 666655 568999999999999999999884 67889999999999987654
Q ss_pred EE
Q 001680 979 VT 980 (1032)
Q Consensus 979 V~ 980 (1032)
+.
T Consensus 559 ~i 560 (630)
T TIGR00643 559 CL 560 (630)
T ss_pred EE
Confidence 43
No 43
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.80 E-value=5.8e-18 Score=215.61 Aligned_cols=105 Identities=13% Similarity=0.281 Sum_probs=85.9
Q ss_pred ceEEEEeccHHHHHHHHHHhhhc------Cc---eEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccC
Q 001680 878 IKSIVFSQWTRMLDLVENSLNQH------CI---QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA 948 (1032)
Q Consensus 878 ~KvIIFSqf~~~ld~L~~~L~~~------gi---~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A 948 (1032)
.|.||||.....++.+.+.|.+. ++ .+..++|+++ ++.+++++|.++ ....++++.+..++|++....
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~-~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE-RLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC-CCCeEEEEecccccCCCcccc
Confidence 39999999999999888877653 22 3456899885 678899999875 444667788999999999999
Q ss_pred CEEEEecCCCCCChHHHHhHhhhccCC---cccEEEEEEE
Q 001680 949 SHVILLDLWWNPTTEDQAVDRAHRIGQ---TRPVTVTRLT 985 (1032)
Q Consensus 949 ~~VI~~Dp~WNp~~e~QAigRi~RiGQ---~k~V~VyrLi 985 (1032)
+.||++.|.-++..+.|++||+-|.-- +....|+.++
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 999999999999999999999999854 4456666654
No 44
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=192.66 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=103.9
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 910 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs 910 (1032)
..|...|.++|....... ..|+||||+...+++.|...|...+++...|||.
T Consensus 323 ~~K~~~l~~lL~~~~~~~----------------------------~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd 374 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDS----------------------------EGKVIIFCETKRTCDELARNLRRKGWPAVAIHGD 374 (519)
T ss_pred HHHHHHHHHHHHHHhccC----------------------------CCcEEEEecchhhHHHHHHHHHhcCcceeeeccc
Confidence 567777888887766211 2399999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCccc
Q 001680 911 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 978 (1032)
Q Consensus 911 ~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 978 (1032)
.++.+|..+++.|.++ +..||+ .|++++.||++...++||+||+|-|...|.+|+||..|-|++-.
T Consensus 375 ~sQ~eR~~~L~~FreG-~~~vLV-ATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 375 KSQSERDWVLKGFREG-KSPVLV-ATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred ccHHHHHHHHHhcccC-CcceEE-EcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce
Confidence 9999999999999976 556655 66999999999999999999999999999999999999887744
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.78 E-value=2e-17 Score=207.19 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=89.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhc--CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~--gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp 956 (1032)
+++||++....++.+...|++. ++++..++|.|+.++|.+++++|.++ +..||| +|.+.+.|+|+..+++||++++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILV-aT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLV-CTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcccccccCCEEEEecC
Confidence 8999999999999999999885 78999999999999999999999975 666655 6689999999999999999998
Q ss_pred C-CCCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 957 W-WNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 957 ~-WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
+ +..+.+.|++||++|-|+.- ++|-|+..
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 5 45678899999999998654 34445533
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.77 E-value=5e-17 Score=200.89 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=70.5
Q ss_pred HHHHhhhc--CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC-CCChHHHHhHh
Q 001680 893 VENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-NPTTEDQAVDR 969 (1032)
Q Consensus 893 L~~~L~~~--gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W-Np~~e~QAigR 969 (1032)
+.+.|.+. ++++..++|+|+.++|.+++++|.++ ++.||+ +|.+.++|+|+..++.||+++++. ..+.+.|++||
T Consensus 495 ~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GR 572 (681)
T PRK10917 495 TYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG-EIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGR 572 (681)
T ss_pred HHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhc
Confidence 34444433 47889999999999999999999975 666655 668999999999999999999985 56889999999
Q ss_pred hhccCCcccEE
Q 001680 970 AHRIGQTRPVT 980 (1032)
Q Consensus 970 i~RiGQ~k~V~ 980 (1032)
++|-|..-.+.
T Consensus 573 vGR~g~~g~~i 583 (681)
T PRK10917 573 VGRGAAQSYCV 583 (681)
T ss_pred ccCCCCceEEE
Confidence 99998764433
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.76 E-value=3.8e-17 Score=201.74 Aligned_cols=102 Identities=22% Similarity=0.193 Sum_probs=94.2
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
..||||.....++.|...|...|+.+..++|+|+.++|..++++|..+ ++.||+ +|.+.|.|||+...++||+|++|-
T Consensus 682 sgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~VLV-ATdAFGMGIDkPDVR~VIHydlPk 759 (1195)
T PLN03137 682 CGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINIIC-ATVAFGMGINKPDVRFVIHHSLPK 759 (1195)
T ss_pred CceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcEEE-EechhhcCCCccCCcEEEEcCCCC
Confidence 679999999999999999999999999999999999999999999976 677766 569999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEE
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVT 982 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~Vy 982 (1032)
+...+.|++||++|.|+.-.+..+
T Consensus 760 SiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 760 SIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CHHHHHhhhcccCCCCCCceEEEE
Confidence 999999999999999988665544
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.75 E-value=1.9e-16 Score=202.51 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=87.9
Q ss_pred eEEEEeccHHHHHHHHHHhhhc--CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~--gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp 956 (1032)
+++||++....++.+.+.|.+. ++++..++|.|+.++|.+++.+|.++ ++.||| +|.+.+.|+|+..+++||+.++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VLV-aTdIierGIDIP~v~~VIi~~a 888 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIIIERA 888 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEEE-ECchhhcccccccCCEEEEecC
Confidence 8999999999999999999887 78899999999999999999999975 677766 5589999999999999998776
Q ss_pred C-CCCChHHHHhHhhhccCCcccEE
Q 001680 957 W-WNPTTEDQAVDRAHRIGQTRPVT 980 (1032)
Q Consensus 957 ~-WNp~~e~QAigRi~RiGQ~k~V~ 980 (1032)
. |..+.+.|++||++|.|++--++
T Consensus 889 d~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 889 DHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred CCCCHHHHHHHhhccCCCCCceEEE
Confidence 4 67788999999999998875433
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.70 E-value=2.2e-15 Score=187.15 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=94.3
Q ss_pred eEEEEeccHHHHHHHHHHhhhc--------CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCE
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH--------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASH 950 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~--------gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~ 950 (1032)
++|||++.....+.|...|... +.++..++|++++++|.++.++|.++ .+++| ++|++++.|||+...++
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G-~i~vL-VaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG-ELLGV-ATTNALELGVDISGLDA 350 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC-CceEE-EECchHhccCCcccccE
Confidence 9999999999999999888753 56677899999999999999999975 66665 57799999999999999
Q ss_pred EEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHH
Q 001680 951 VILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 994 (1032)
Q Consensus 951 VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I 994 (1032)
||+||.|-+...+.|++||++|.|+.-- ++-++..+..|..+
T Consensus 351 VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~ 392 (742)
T TIGR03817 351 VVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYL 392 (742)
T ss_pred EEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHH
Confidence 9999999999999999999999997643 33344445555543
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.69 E-value=3.9e-15 Score=188.56 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=88.1
Q ss_pred eEEEEeccHHHHHHHHHHhhhc------CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEE
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 952 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~------gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI 952 (1032)
++|||++....++.+...|.+. +..+..++|+++.++|..+.+.|+++ .++|++ +|.+.+.|+|+...++||
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~vLV-aTs~Le~GIDip~Vd~VI 363 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELKVVV-SSTSLELGIDIGYIDLVV 363 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCeEEE-ECChHHhcCCCCCCcEEE
Confidence 8999999999999999988763 46788899999999999999999976 666655 669999999999999999
Q ss_pred EecCCCCCChHHHHhHhhhcc-CCcccEEEE
Q 001680 953 LLDLWWNPTTEDQAVDRAHRI-GQTRPVTVT 982 (1032)
Q Consensus 953 ~~Dp~WNp~~e~QAigRi~Ri-GQ~k~V~Vy 982 (1032)
++++|.+...+.|++||++|- |+...-.|+
T Consensus 364 ~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 364 LLGSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred EeCCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 999999999999999999986 444444444
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.69 E-value=2.3e-15 Score=188.60 Aligned_cols=82 Identities=22% Similarity=0.087 Sum_probs=66.3
Q ss_pred eEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEE----ec-----CCCCCChHHHHhHhhhcc
Q 001680 903 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----LD-----LWWNPTTEDQAVDRAHRI 973 (1032)
Q Consensus 903 ~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~----~D-----p~WNp~~e~QAigRi~Ri 973 (1032)
.+..++|+++..+|..+.+.|+++ .++||+ +|.+.+.|+|+.+...||. || .+.++..+.|++||++|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G-~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDR-LIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcC-CCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 467789999999999999999975 777766 5599999999998877776 76 467778899999999999
Q ss_pred CCcccEEEEEEEe
Q 001680 974 GQTRPVTVTRLTI 986 (1032)
Q Consensus 974 GQ~k~V~VyrLi~ 986 (1032)
|....=.++-++.
T Consensus 383 g~d~~G~~ii~~~ 395 (737)
T PRK02362 383 GLDPYGEAVLLAK 395 (737)
T ss_pred CCCCCceEEEEec
Confidence 9875434444443
No 52
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1e-14 Score=174.56 Aligned_cols=105 Identities=26% Similarity=0.440 Sum_probs=95.0
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||+.-...++.|...|...|+.+..|+|++++.+|.++++.|+++ ..+|||.+ ++++.||++...++||+||+|.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vLVaT-DvaaRGiDi~~v~~VinyD~p~ 352 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVLVAT-DVAARGLDIPDVSHVINYDLPL 352 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEEEe-chhhccCCccccceeEEccCCC
Confidence 799999999999999999999999999999999999999999999954 77887755 9999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
++..+.+|+||..|.|.+= ..+.|+..
T Consensus 353 ~~e~yvHRiGRTgRaG~~G--~ai~fv~~ 379 (513)
T COG0513 353 DPEDYVHRIGRTGRAGRKG--VAISFVTE 379 (513)
T ss_pred CHHHheeccCccccCCCCC--eEEEEeCc
Confidence 9999999999999999442 34445554
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=99.65 E-value=2.2e-14 Score=178.55 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=59.1
Q ss_pred EEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC---------CCCChHHHHhHhhhccC
Q 001680 904 YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW---------WNPTTEDQAVDRAHRIG 974 (1032)
Q Consensus 904 ~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~---------WNp~~e~QAigRi~RiG 974 (1032)
+..++|+++.++|..+.+.|+++ .++||+ +|.+.+.|+|+.+ .+||++|.+ +++..+.|++||++|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~g-~i~VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRNR-YIKVIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHcC-CCeEEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 45679999999999999999965 677755 5699999999985 688887753 45667889999999999
Q ss_pred Cccc
Q 001680 975 QTRP 978 (1032)
Q Consensus 975 Q~k~ 978 (1032)
....
T Consensus 365 ~d~~ 368 (674)
T PRK01172 365 YDQY 368 (674)
T ss_pred CCCc
Confidence 7655
No 54
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.1e-14 Score=158.04 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=99.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
-+||||.-..+.+.+.-.|+..|+....++|.|++..|..+++.|+++ ...||+ +|++++.||+.+.+++||+||.|-
T Consensus 302 s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv-~TDVaSRGLDip~Vd~VVNyDiP~ 379 (476)
T KOG0330|consen 302 SVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILV-CTDVASRGLDIPHVDVVVNYDIPT 379 (476)
T ss_pred cEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEE-ecchhcccCCCCCceEEEecCCCC
Confidence 789999999999999999999999999999999999999999999975 555555 669999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 991 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiE 991 (1032)
+-..|..|.||+.|-| +.-.+..||+.-.||
T Consensus 380 ~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 380 HSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 9999999999999999 666777888876665
No 55
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=8.1e-15 Score=152.69 Aligned_cols=109 Identities=19% Similarity=0.329 Sum_probs=97.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
..||||+-....++|.+.++...+.+..++|.|++++|++++++|+.+ .-+|| +++++-+.|++.|..+.||+||+|-
T Consensus 268 QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvL-itTDVwaRGiDv~qVslviNYDLP~ 345 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVL-ITTDVWARGIDVQQVSLVINYDLPN 345 (400)
T ss_pred eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEE-EEechhhccCCcceeEEEEecCCCc
Confidence 789999999999999999999999999999999999999999999976 44555 5779999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 991 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiE 991 (1032)
|+..+..||||.+|+|.+- .+.+|+..+.++
T Consensus 346 nre~YIHRIGRSGRFGRkG--vainFVk~~d~~ 376 (400)
T KOG0328|consen 346 NRELYIHRIGRSGRFGRKG--VAINFVKSDDLR 376 (400)
T ss_pred cHHHHhhhhccccccCCcc--eEEEEecHHHHH
Confidence 9999999999999999763 345677666443
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.62 E-value=6.3e-14 Score=161.64 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=86.1
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCc--eEEeeCCCCCHHHHHHH----HHhhccCccccEEEeecCCCccccccccCCEEE
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCI--QYRRLDGTMSLPARDRA----VKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 952 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi--~~~~l~Gs~s~~eR~~~----i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI 952 (1032)
++|||++....++.+...|.+.+. .+..++|.++..+|.+. ++.|.++ ...| |++|++.+.|+|+ .++.||
T Consensus 224 ~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~i-lvaT~~~~~GiDi-~~~~vi 300 (358)
T TIGR01587 224 KIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFV-IVATQVIEASLDI-SADVMI 300 (358)
T ss_pred eEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeE-EEECcchhceecc-CCCEEE
Confidence 999999999999999999988876 48899999999999764 8899864 4455 5577999999999 588999
Q ss_pred EecCCCCCChHHHHhHhhhccCCcc----cEEEEEEEeCC
Q 001680 953 LLDLWWNPTTEDQAVDRAHRIGQTR----PVTVTRLTIRD 988 (1032)
Q Consensus 953 ~~Dp~WNp~~e~QAigRi~RiGQ~k----~V~VyrLi~~~ 988 (1032)
.++.+ +..+.|++||++|.|... .|+|+.....+
T Consensus 301 ~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 301 TELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 88765 788999999999999764 35555544433
No 57
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.62 E-value=2e-14 Score=174.07 Aligned_cols=116 Identities=10% Similarity=0.078 Sum_probs=98.0
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+....+. .+||||......+.|...|.+.|+++..++|
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~-----------------------------pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQ-----------------------------PVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCC-----------------------------CEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 45799999999987655554 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccc---------cCCEEEEecCCCCCChHHHHhHhhhccCCcccE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 979 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~---------~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 979 (1032)
.+...+|..+...|+.+ . ++++|..+|.|+++. ..++|+.++++-+. .+.|++||+.|.|..-..
T Consensus 457 ~~~~~E~~ii~~ag~~g---~-VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG---A-VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSS 530 (762)
T ss_pred CChHHHHHHHHHcCCCC---e-EEEEccccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeE
Confidence 99888877776666543 4 456889999999999 78999999999665 449999999999987553
No 58
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.62 E-value=4.7e-14 Score=173.84 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=77.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhc-----CceEEeeCCCCCHH---------------------HHHHHHHhhccCccccEE
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH-----CIQYRRLDGTMSLP---------------------ARDRAVKDFNTDREITVM 932 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~-----gi~~~~l~Gs~s~~---------------------eR~~~i~~F~~~~~~~VL 932 (1032)
|.+|||.....+..+...|.+. +...+.++|+...+ ...+++++|.++..++++
T Consensus 516 kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~il 595 (667)
T TIGR00348 516 KAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLL 595 (667)
T ss_pred ceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEE
Confidence 8899999988888777776554 34456677665432 234789999875566666
Q ss_pred EeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhcc-CCcc-cEEEEEEE
Q 001680 933 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI-GQTR-PVTVTRLT 985 (1032)
Q Consensus 933 LlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~Ri-GQ~k-~V~VyrLi 985 (1032)
++ .+...+|.+.+.++++++.-|.-... ..|++||+.|+ +-.| ...|+.|+
T Consensus 596 IV-vdmllTGFDaP~l~tLyldKplk~h~-LlQai~R~nR~~~~~K~~g~IvDy~ 648 (667)
T TIGR00348 596 IV-VDMLLTGFDAPILNTLYLDKPLKYHG-LLQAIARTNRIDGKDKTFGLIVDYR 648 (667)
T ss_pred EE-EcccccccCCCccceEEEeccccccH-HHHHHHHhccccCCCCCCEEEEECc
Confidence 54 49999999999999999999887654 67999999995 5434 46666665
No 59
>PRK00254 ski2-like helicase; Provisional
Probab=99.61 E-value=9.9e-14 Score=173.57 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=63.9
Q ss_pred eEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEE-------ecCCCCC-ChHHHHhHhhhccC
Q 001680 903 QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL-------LDLWWNP-TTEDQAVDRAHRIG 974 (1032)
Q Consensus 903 ~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~-------~Dp~WNp-~~e~QAigRi~RiG 974 (1032)
.+..++|+++.++|..+.+.|+++ .++||+ +|.+.+.|+|+.+.+.||. ++.+.-| ..+.|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G-~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREG-LIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCC-CCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 467789999999999999999965 677766 5699999999988777763 2222223 36799999999998
Q ss_pred CcccEEEEEEEeCCC
Q 001680 975 QTRPVTVTRLTIRDT 989 (1032)
Q Consensus 975 Q~k~V~VyrLi~~~T 989 (1032)
....-.++-++..+.
T Consensus 375 ~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 375 YDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEEecCcc
Confidence 766545555554443
No 60
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.60 E-value=3.8e-15 Score=145.22 Aligned_cols=120 Identities=28% Similarity=0.422 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCC
Q 001680 832 SKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTM 911 (1032)
Q Consensus 832 sKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~ 911 (1032)
.|+..+.+.+......+. ++|||+.....++.+.+.|.+.++.+..++|++
T Consensus 12 ~k~~~i~~~i~~~~~~~~-----------------------------~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (131)
T cd00079 12 EKLEALLELLKEHLKKGG-----------------------------KVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62 (131)
T ss_pred HHHHHHHHHHHhcccCCC-----------------------------cEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 699999888887654333 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEE
Q 001680 912 SLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 982 (1032)
Q Consensus 912 s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~Vy 982 (1032)
+..+|..+++.|+++. ..+|+++.++++|+|++.|++||+++++|++..+.|++||++|.||+..|+++
T Consensus 63 ~~~~~~~~~~~f~~~~--~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 63 SQEEREEVLKDFREGE--IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CHHHHHHHHHHHHcCC--CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999763 45555789999999999999999999999999999999999999998877764
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.60 E-value=1.5e-13 Score=168.19 Aligned_cols=101 Identities=25% Similarity=0.348 Sum_probs=84.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHH-----HHHHhhcc----Cc-----cccEEEeecCCCccccc
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARD-----RAVKDFNT----DR-----EITVMLMSLKAGNLGLN 944 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~-----~~i~~F~~----~~-----~~~VLLlStkagg~GLN 944 (1032)
++|||++....++.|...|.+.++ ..++|.|++.+|. +++++|.+ +. .-..+|++|++++.|||
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLD 351 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVN 351 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhccc
Confidence 899999999999999999999887 8999999999999 78999986 21 11356788999999999
Q ss_pred cccCCEEEEecCCCCCChHHHHhHhhhccCCccc--EEEEEE
Q 001680 945 MVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP--VTVTRL 984 (1032)
Q Consensus 945 L~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~--V~VyrL 984 (1032)
+.. ++||+...++ ..+.||+||++|.|.... ++|+.+
T Consensus 352 Id~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 352 ISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred CCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 975 9999877664 789999999999999644 444433
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=2.7e-13 Score=165.93 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=99.3
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+......+. ++||||......+.|...|.+.|+++..++|
T Consensus 410 ~~~K~~al~~~i~~~~~~~~-----------------------------pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGR-----------------------------PVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 35699999998877544444 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCcccccc---ccCC-----EEEEecCCCCCChHHHHhHhhhccCCccc
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNM---VAAS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRP 978 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL---~~A~-----~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 978 (1032)
.+...++..+...|+.+ . ++++|..+|.|+++ .... |||++|+|-|+..+.|++||+.|.|+.-.
T Consensus 461 ~~~~~e~~~i~~ag~~g---~-VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG---A-VTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred CccHHHHHHHHHcCCCC---e-EEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCee
Confidence 99887777777776643 4 45677999999999 4666 99999999999999999999999998754
No 63
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=2.1e-13 Score=159.97 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=65.3
Q ss_pred CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC-CCCChHHHHhHhhhccCCcc
Q 001680 901 CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW-WNPTTEDQAVDRAHRIGQTR 977 (1032)
Q Consensus 901 gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~-WNp~~e~QAigRi~RiGQ~k 977 (1032)
++.+..+||.|+.+++++++++|+++ ++.||+ +|.+.-+|+|..+|+.+|++++. +--+...|--||++|=+...
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEG-EIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcC-CCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 45678899999999999999999975 666655 66899999999999999999987 77889999999999965443
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=4.4e-13 Score=160.79 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=95.7
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.+|.+.+......+. .+|||+......+.|...|.+.|+++..|+|
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~-----------------------------pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg 505 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGR-----------------------------PVLVGTRSVAASERLSALLREAGLPHQVLNA 505 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCEEEeeC
Confidence 35699999998887554333 7999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccc---cCC-----EEEEecCCCCCChHHHHhHhhhccCCccc
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---AAS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRP 978 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~---~A~-----~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 978 (1032)
.+. +|++.+..|... ... ++++|..+|.|+++. ... |||++|.|-|...+.|++||+.|.|..-.
T Consensus 506 ~~~--~rE~~ii~~ag~-~g~-VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~ 578 (656)
T PRK12898 506 KQD--AEEAAIVARAGQ-RGR-ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGS 578 (656)
T ss_pred CcH--HHHHHHHHHcCC-CCc-EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeE
Confidence 864 666666666643 224 556889999999988 333 99999999999999999999999997643
No 65
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=4.4e-13 Score=152.54 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=95.2
Q ss_pred CceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC
Q 001680 877 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 877 ~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp 956 (1032)
.++++||++-...++.|...|...++++..|+|.-++.+|.++++.|..+ .+.||+ .|.+++.|||.....|||+||.
T Consensus 337 ~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvlV-aT~VaaRGlDi~~V~hVInyDm 414 (482)
T KOG0335|consen 337 WEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNG-KAPVLV-ATNVAARGLDIPNVKHVINYDM 414 (482)
T ss_pred cceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcC-CcceEE-EehhhhcCCCCCCCceeEEeec
Confidence 34999999999999999999999999999999999999999999999976 666766 4599999999999999999999
Q ss_pred CCCCChHHHHhHhhhccCCcccEEEE
Q 001680 957 WWNPTTEDQAVDRAHRIGQTRPVTVT 982 (1032)
Q Consensus 957 ~WNp~~e~QAigRi~RiGQ~k~V~Vy 982 (1032)
|-+-..+..||||.+|-|+.--.+.+
T Consensus 415 P~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 415 PADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred CcchhhHHHhccccccCCCCceeEEE
Confidence 99999999999999999998655543
No 66
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.53 E-value=1e-13 Score=164.29 Aligned_cols=106 Identities=14% Similarity=0.200 Sum_probs=86.3
Q ss_pred ceEEEEeccHHHHHHHHHHhhhc-----CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEE
Q 001680 878 IKSIVFSQWTRMLDLVENSLNQH-----CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 952 (1032)
Q Consensus 878 ~KvIIFSqf~~~ld~L~~~L~~~-----gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI 952 (1032)
.|.||||...+.++.+...|.+. |--+..|+|.. ++-++.|+.|-.......+.+|.+.+.+|++...+..++
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 49999999999999999999876 22345678876 455678999987545556677889999999999999999
Q ss_pred EecCCCCCChHHHHhHhhhcc-------CCccc-EEEEEEE
Q 001680 953 LLDLWWNPTTEDQAVDRAHRI-------GQTRP-VTVTRLT 985 (1032)
Q Consensus 953 ~~Dp~WNp~~e~QAigRi~Ri-------GQ~k~-V~VyrLi 985 (1032)
|+-+--+-..+.|-+||.-|+ ||.|. .+|+.++
T Consensus 505 F~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred ehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 999999999999999999996 45554 6666654
No 67
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.53 E-value=7.4e-13 Score=148.58 Aligned_cols=125 Identities=18% Similarity=0.267 Sum_probs=108.6
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
.+.|...|+++|.+.. .+ .+|||.+....++.|.+.|.+.|+.+++|||
T Consensus 501 ed~k~kkL~eil~~~~--~p-----------------------------piIIFvN~kk~~d~lAk~LeK~g~~~~tlHg 549 (673)
T KOG0333|consen 501 EDEKRKKLIEILESNF--DP-----------------------------PIIIFVNTKKGADALAKILEKAGYKVTTLHG 549 (673)
T ss_pred chHHHHHHHHHHHhCC--CC-----------------------------CEEEEEechhhHHHHHHHHhhccceEEEeeC
Confidence 5789999999998762 22 8899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCC
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 989 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~T 989 (1032)
+.++++|+.++..|.++ ...||+ .|+++|.||+.++.++||+||..-+-..+.+||||.+|-|+.-.+ .-|+++..
T Consensus 550 ~k~qeQRe~aL~~fr~~-t~dIlV-aTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~d 625 (673)
T KOG0333|consen 550 GKSQEQRENALADFREG-TGDILV-ATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPAD 625 (673)
T ss_pred CccHHHHHHHHHHHHhc-CCCEEE-EecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccch
Confidence 99999999999999975 445555 569999999999999999999999999999999999999987543 33555443
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.52 E-value=2.3e-13 Score=163.87 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=101.5
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 910 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs 910 (1032)
..|+.++++.+.+....+. .+||||......+.|...|.+.|+++..++|.
T Consensus 388 ~~k~~ai~~~i~~~~~~gr-----------------------------pvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQ-----------------------------PVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 4689999888877766665 89999999999999999999999999999998
Q ss_pred CCHHHHHHHHHhhccCccccEEEeecCCCcccccccc-------CCEEEEecCCCCCChHHHHhHhhhccCCcccE
Q 001680 911 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA-------ASHVILLDLWWNPTTEDQAVDRAHRIGQTRPV 979 (1032)
Q Consensus 911 ~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~-------A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 979 (1032)
..+|+..+..|... ...| +++|..+|.|+++.. .-|||.+++|-|...+.|++||+.|.|+.-..
T Consensus 439 --q~~rEa~ii~~ag~-~g~V-tIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 439 --NHEREAEIIAQAGR-KGAV-TIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred --hHHHHHHHHHhcCC-CceE-EEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 68999999999854 4445 556799999999888 67999999999999999999999999988543
No 69
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=3.8e-13 Score=150.24 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=90.4
Q ss_pred eEEEEeccHHHHHHHHHHhh----hcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEe
Q 001680 879 KSIVFSQWTRMLDLVENSLN----QHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 954 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~----~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~ 954 (1032)
++|+|+...+....|...|+ ...+.+-.++|+.+.+.|.+.+++|+.+ +++||++| ++++.|+++-..+.||+|
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcS-D~laRGiDv~~v~~VINY 508 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICS-DALARGIDVNDVDNVINY 508 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEeh-hhhhcCCcccccceEeec
Confidence 99999999988888777776 3356667799999999999999999976 88998877 999999999999999999
Q ss_pred cCCCCCChHHHHhHhhhccCCcccEEEEEEEe
Q 001680 955 DLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTI 986 (1032)
Q Consensus 955 Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~ 986 (1032)
|||-.-..+..|+||..|-||.- ++|.++.
T Consensus 509 d~P~~~ktyVHR~GRTARAgq~G--~a~tll~ 538 (620)
T KOG0350|consen 509 DPPASDKTYVHRAGRTARAGQDG--YAITLLD 538 (620)
T ss_pred CCCchhhHHHHhhcccccccCCc--eEEEeec
Confidence 99999999999999999999874 3344443
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.52 E-value=3.6e-12 Score=155.22 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=87.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhc--CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~--gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp 956 (1032)
++|||..-...++.+.+.|.+. ++.+..++|++++ +++.+++|..++..+ +|++|..++.||++...++||.++.
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~k-ILVATdIAERGIDIp~V~~VID~G~ 473 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPS-IIISTPYLESSVTIRNATHVYDTGR 473 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCcee-EEeccChhhccccccCeeEEEECCC
Confidence 8999999999999999999987 7999999999986 457778884333444 4568899999999999999999972
Q ss_pred C------------CCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHH
Q 001680 957 W------------WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVED 992 (1032)
Q Consensus 957 ~------------WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe 992 (1032)
. .+.+...||.||++|. ++=.+|+|+.++....
T Consensus 474 ~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 474 VYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred ccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 2 2556778999988887 4678888998877543
No 71
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.50 E-value=9.5e-13 Score=162.50 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=70.9
Q ss_pred HHHHHHHhhhc--CceEEeeCCCCC--HHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC---CCC--
Q 001680 890 LDLVENSLNQH--CIQYRRLDGTMS--LPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW---WNP-- 960 (1032)
Q Consensus 890 ld~L~~~L~~~--gi~~~~l~Gs~s--~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~---WNp-- 960 (1032)
.+.+++.|.+. +.++.++|+++. .+++++++++|.++ ++.||| .|+..+.|+|+...+.|+++|.+ ..|
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 34455555554 677889999886 46789999999975 667766 56889999999999999888765 333
Q ss_pred -------ChHHHHhHhhhccCCcccEEEEEE
Q 001680 961 -------TTEDQAVDRAHRIGQTRPVTVTRL 984 (1032)
Q Consensus 961 -------~~e~QAigRi~RiGQ~k~V~VyrL 984 (1032)
..+.|+.||+.|.|..-.|.+..+
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 468899999999877766665443
No 72
>PRK09401 reverse gyrase; Reviewed
Probab=99.49 E-value=1.8e-12 Score=166.89 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=76.2
Q ss_pred eEEEEeccHHH---HHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEee---cCCCcccccccc-CCEE
Q 001680 879 KSIVFSQWTRM---LDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVA-ASHV 951 (1032)
Q Consensus 879 KvIIFSqf~~~---ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlS---tkagg~GLNL~~-A~~V 951 (1032)
.+|||++.... ++.|...|...|+++..++|++ .+.+++|.++ +++|||.+ +++++.||++.. ..+|
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCCcceeEE
Confidence 78999998666 9999999999999999999999 2346999976 88999987 789999999999 8999
Q ss_pred EEecCCC------CCChHHHHhHhhhcc
Q 001680 952 ILLDLWW------NPTTEDQAVDRAHRI 973 (1032)
Q Consensus 952 I~~Dp~W------Np~~e~QAigRi~Ri 973 (1032)
||||.|- .......+++|.-.+
T Consensus 404 I~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 404 IFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 9999996 555666788887543
No 73
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=1.3e-12 Score=146.97 Aligned_cols=137 Identities=16% Similarity=0.300 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhc------------
Q 001680 833 KIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH------------ 900 (1032)
Q Consensus 833 Kl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~------------ 900 (1032)
++-+|..+|.+..+... ..|+|||-.-.+++++=+..|...
T Consensus 408 RLV~Laa~L~~~~k~~~---------------------------~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~ 460 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEE---------------------------KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAP 460 (708)
T ss_pred hHHHHHHHHHHHhhhhh---------------------------hceeEEEEechhHHHHHHHHHHhhhhcccccccCCc
Confidence 45577777777765543 238899988888887666655432
Q ss_pred ----------CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhh
Q 001680 901 ----------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRA 970 (1032)
Q Consensus 901 ----------gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi 970 (1032)
+.++++++|+|++++|..+++.|...... +|++|++++.||+|....-||-||||..++.+..|+||.
T Consensus 461 ~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 461 DSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred ccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 34689999999999999999999976433 566779999999999999999999999999999999999
Q ss_pred hccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 001680 971 HRIGQTRPVTVTRLTIRDTVEDRILKLQDDKR 1002 (1032)
Q Consensus 971 ~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~ 1002 (1032)
-|+|-+-.-.. |+.....| .+ .....+.
T Consensus 539 ARaG~kG~alL--fL~P~Eae-y~-~~l~~~~ 566 (708)
T KOG0348|consen 539 ARAGEKGEALL--FLLPSEAE-YV-NYLKKHH 566 (708)
T ss_pred hhccCCCceEE--EecccHHH-HH-HHHHhhc
Confidence 99998865333 44454444 43 3333333
No 74
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.47 E-value=1.7e-13 Score=141.65 Aligned_cols=167 Identities=25% Similarity=0.301 Sum_probs=103.7
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcC
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 377 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1032)
.+|||||.+++.-++...........++|...+|.|||+++++++....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 4799999999998886543321135589999999999999998886532
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCceEEEcCh-hhHHHHHHHHHHhCCCCCCcEEEEEeC--CCC------
Q 001680 378 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHG--GSR------ 448 (1032)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlv~~G--~~r------ 448 (1032)
. ++|||||. +|+.||.++|..+.... ..+..... ...
T Consensus 51 -----------------------------~---~~l~~~p~~~l~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 96 (184)
T PF04851_consen 51 -----------------------------R---KVLIVAPNISLLEQWYDEFDDFGSEK--YNFFEKSIKPAYDSKEFIS 96 (184)
T ss_dssp -----------------------------C---EEEEEESSHHHHHHHHHHHHHHSTTS--EEEEE--GGGCCE-SEEET
T ss_pred -----------------------------c---ceeEecCHHHHHHHHHHHHHHhhhhh--hhhcccccccccccccccc
Confidence 1 58999997 68899999998776531 21111100 000
Q ss_pred -CC-----CccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCC
Q 001680 449 -TK-----DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 522 (1032)
Q Consensus 449 -~~-----~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~ 522 (1032)
.. ........++++++|+.+.......... .+...
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~---------~~~~~------------------------------ 137 (184)
T PF04851_consen 97 IQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKI---------DESAR------------------------------ 137 (184)
T ss_dssp TTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH------------------------------------------------
T ss_pred cccccccccccccccccchhhHHHHHHhhccccccc---------ccchh------------------------------
Confidence 00 0122457789999999987642110000 00000
Q ss_pred CCcccCCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCC
Q 001680 523 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPI 575 (1032)
Q Consensus 523 ~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi 575 (1032)
....+....+++||+||||++.+... ++.+....+.+++.|||||.
T Consensus 138 -----~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 138 -----RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp -----GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred -----hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 00013344578999999999965432 56666688899999999995
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.46 E-value=7.1e-12 Score=144.01 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=67.5
Q ss_pred eEEEEeccHHHHHHHHHHhhhcC--ceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHC--IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~g--i~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp 956 (1032)
|+|||++....++.+...|++.+ +.+..++|.++..+|.+.. +.. +|++|++.+.|||+.. +.|| ++
T Consensus 274 k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~-~~vi-~~- 342 (357)
T TIGR03158 274 RGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKR-DWLI-FS- 342 (357)
T ss_pred eEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCC-ceEE-EC-
Confidence 99999999999999999999875 5788999999999887653 233 5668899999999975 4666 56
Q ss_pred CCCCChHHHHhHhhh
Q 001680 957 WWNPTTEDQAVDRAH 971 (1032)
Q Consensus 957 ~WNp~~e~QAigRi~ 971 (1032)
+-++..+.||+||++
T Consensus 343 p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHhhhcccCC
Confidence 557889999999874
No 76
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.46 E-value=6.2e-14 Score=124.47 Aligned_cols=78 Identities=35% Similarity=0.525 Sum_probs=71.4
Q ss_pred HHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccC
Q 001680 895 NSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIG 974 (1032)
Q Consensus 895 ~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiG 974 (1032)
+.|+..|+.+..++|+++.++|.++++.|+.+ ...||+ ++.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 36888999999999999999999999999976 445544 5699999999999999999999999999999999999998
No 77
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.45 E-value=5.4e-13 Score=152.23 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=94.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
.+||||....-++-+...|...|+++..|.|.|++++|..+++..+.- .++| |+|++..+.|++-..+|-||++|++-
T Consensus 274 QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~ 351 (980)
T KOG4284|consen 274 QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRI-LVSTDLTARGIDADNVNLVVNIDAPA 351 (980)
T ss_pred HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEE-EEecchhhccCCccccceEEecCCCc
Confidence 779999999999999999999999999999999999999999999854 5555 45889999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
+..++..||||++|+|.. ...|..+..+.
T Consensus 352 d~eTY~HRIGRAgRFG~~-G~aVT~~~~~~ 380 (980)
T KOG4284|consen 352 DEETYFHRIGRAGRFGAH-GAAVTLLEDER 380 (980)
T ss_pred chHHHHHHhhhccccccc-ceeEEEeccch
Confidence 999999999999999954 45555554433
No 78
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.42 E-value=1e-12 Score=136.67 Aligned_cols=164 Identities=26% Similarity=0.253 Sum_probs=110.0
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcC
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 377 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1032)
.+++|||.+++..++... ...++..++|.|||..++.++......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~----------------------------- 51 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKR----------------------------- 51 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcc-----------------------------
Confidence 469999999999988431 457999999999999877777553221
Q ss_pred cccccccCCCCCCCCCCccccccccccCCCCCCceEEEcC-hhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCcccc-
Q 001680 378 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL- 455 (1032)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l- 455 (1032)
.+.+++||||| ..+..||..++.+.+..........+++..........
T Consensus 52 -----------------------------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (201)
T smart00487 52 -----------------------------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLE 102 (201)
T ss_pred -----------------------------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHh
Confidence 11356999999 56889999999988764322455555554422222112
Q ss_pred -CCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCcc
Q 001680 456 -AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 534 (1032)
Q Consensus 456 -~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~ 534 (1032)
..++++++||+.+....... .+..
T Consensus 103 ~~~~~v~~~t~~~l~~~~~~~-------------------------------------------------------~~~~ 127 (201)
T smart00487 103 SGKTDILVTTPGRLLDLLEND-------------------------------------------------------LLEL 127 (201)
T ss_pred cCCCCEEEeChHHHHHHHHcC-------------------------------------------------------CcCH
Confidence 23399999999887643110 0233
Q ss_pred ccccEEEEecCcccCC-cc-cHHHHHHHhc-ccCcEEEEeccCCCCChH
Q 001680 535 VGWFRVVLDEAQTIKN-HR-TQVARACCSL-RAKRRWCLSGTPIQNSID 580 (1032)
Q Consensus 535 ~~w~rVIlDEAH~iKN-~~-S~~~kal~~L-~a~~r~lLTGTPi~N~l~ 580 (1032)
..|.++||||+|.+.+ .. ......+..+ ...+++++||||..+.-.
T Consensus 128 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 128 SNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIEN 176 (201)
T ss_pred hHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHH
Confidence 4577899999999986 33 3333333444 578899999999744333
No 79
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.41 E-value=8.2e-12 Score=140.88 Aligned_cols=135 Identities=24% Similarity=0.262 Sum_probs=113.1
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhc--CceEEeeC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--CIQYRRLD 908 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~--gi~~~~l~ 908 (1032)
..|+..|-..|..+.+. |.|||-....-+.++.+.+.+. |++...++
T Consensus 298 ~~Ki~~L~sFI~shlk~-------------------------------K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~ 346 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSHLKK-------------------------------KSIVFLSSCKQVKFLYEAFCRLRPGIPLLALH 346 (758)
T ss_pred hhHHHHHHHHHHhcccc-------------------------------ceEEEEehhhHHHHHHHHHHhcCCCCceeeec
Confidence 45888888888877653 8999999999999999998876 99999999
Q ss_pred CCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 909 GTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 909 Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
|.|++..|.++.++|... -.++|++|++++.||++...|.||-+|.|-+..+|..|.||.-|++-.-+..+ +++.
T Consensus 347 G~~~Q~~R~ev~~~F~~~--~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll--~L~p- 421 (758)
T KOG0343|consen 347 GTMSQKKRIEVYKKFVRK--RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLL--MLTP- 421 (758)
T ss_pred cchhHHHHHHHHHHHHHh--cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEE--EEcc-
Confidence 999999999999999863 36778888999999999999999999999999999999999999987766544 3333
Q ss_pred CHHHHHHHHHHHH
Q 001680 989 TVEDRILKLQDDK 1001 (1032)
Q Consensus 989 TiEe~I~~lq~~K 1001 (1032)
+-||.++...++|
T Consensus 422 sEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 422 SEEEAMLKKLQKK 434 (758)
T ss_pred hhHHHHHHHHHHc
Confidence 3446666555544
No 80
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.39 E-value=2.5e-11 Score=157.02 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=80.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhcC---------------------------------ceEEeeCCCCCHHHHHHHHHhhcc
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHC---------------------------------IQYRRLDGTMSLPARDRAVKDFNT 925 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~g---------------------------------i~~~~l~Gs~s~~eR~~~i~~F~~ 925 (1032)
++|||++.....+.+...|++.. +.+..++|+++.++|..+.+.|++
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 78999999999998888886531 114567899999999999999997
Q ss_pred CccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhcc
Q 001680 926 DREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRI 973 (1032)
Q Consensus 926 ~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~Ri 973 (1032)
+ .+++++ +|.+...|||+...++||+|+.|.+.+.+.|++||++|.
T Consensus 326 G-~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 326 G-ELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred C-CceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 6 676655 669999999999999999999999999999999999995
No 81
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.37 E-value=2e-11 Score=133.23 Aligned_cols=108 Identities=25% Similarity=0.348 Sum_probs=95.3
Q ss_pred ceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC
Q 001680 878 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 957 (1032)
Q Consensus 878 ~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~ 957 (1032)
.|+|||+...-++|.|..-|.-.||..-.|+|.-.+.+|+.+++.|+.+ .+++|+ .|+.++.||++....||++||.|
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrILv-aTDlaSRGlDv~DiTHV~NyDFP 543 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRILV-ATDLASRGLDVPDITHVYNYDFP 543 (629)
T ss_pred ceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEEE-EechhhcCCCchhcceeeccCCC
Confidence 4999999999999999999999999999999999999999999999976 777766 56999999999999999999999
Q ss_pred CCCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 958 WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 958 WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
-|-..+..|+||.+|-|.+-. -|..|.-.|
T Consensus 544 ~nIeeYVHRvGrtGRaGr~G~-sis~lt~~D 573 (629)
T KOG0336|consen 544 RNIEEYVHRVGRTGRAGRTGT-SISFLTRND 573 (629)
T ss_pred ccHHHHHHHhcccccCCCCcc-eEEEEehhh
Confidence 999999999999999997743 333344333
No 82
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.37 E-value=3.8e-12 Score=124.45 Aligned_cols=137 Identities=24% Similarity=0.245 Sum_probs=96.1
Q ss_pred cceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcCcccccccCCCCCCCCCCcccccccc
Q 001680 323 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRS 402 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1032)
+.++...+|.|||.++++++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~------------------------------------------------------ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS------------------------------------------------------ 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc------------------------------------------------------
Confidence 57999999999999999998764321
Q ss_pred ccCCCCCCceEEEcChhhH-HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCc--cccCCCcEEEEcchhhhccCCCCCCCc
Q 001680 403 FSRRRPAAGTLVVCPASVL-RQWARELEDKVPDKAALSVLIYHGGSRTKDP--VELAKYDVVLTTYSIVTNEVPKQPSVD 479 (1032)
Q Consensus 403 ~~~~~~~~~tLIV~P~sLl-~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~--~~l~~~dVVItTY~~l~~~~~~~~~~~ 479 (1032)
...+++||+||...+ .||..++.++... ...+.++++....... ......+++++||+.+......
T Consensus 28 ----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~----- 96 (144)
T cd00046 28 ----LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER----- 96 (144)
T ss_pred ----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc-----
Confidence 123569999998854 6667777776643 4667777775543321 2346789999999988654211
Q ss_pred hhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccccccEEEEecCcccCCcccHHH---
Q 001680 480 EEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVA--- 556 (1032)
Q Consensus 480 ~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~--- 556 (1032)
..+....|++||+||+|.+.+......
T Consensus 97 --------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~ 126 (144)
T cd00046 97 --------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLLGLK 126 (144)
T ss_pred --------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHHHHH
Confidence 002234588999999999998765543
Q ss_pred HHHHhcccCcEEEEeccC
Q 001680 557 RACCSLRAKRRWCLSGTP 574 (1032)
Q Consensus 557 kal~~L~a~~r~lLTGTP 574 (1032)
.........+++++||||
T Consensus 127 ~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 127 ILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhhCCccceEEEEeccC
Confidence 333345678899999998
No 83
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.36 E-value=2.1e-11 Score=143.85 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=96.2
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
-.||||..+...+.+.++|...|+....++|+++.++|+.+.++|.++ ++.||+ .|.|.|-|+|=.+.-.|||||+|-
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiV-AT~AFGMGIdKpdVRfViH~~lP~ 309 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMV-ATNAFGMGIDKPDVRFVIHYDLPG 309 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EeccccCccCCCCceEEEEecCCC
Confidence 469999999999999999999999999999999999999999999976 666666 559999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 989 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~T 989 (1032)
+...+-|=+||++|-|..-...+ |+....
T Consensus 310 s~EsYyQE~GRAGRDG~~a~ail--l~~~~D 338 (590)
T COG0514 310 SIESYYQETGRAGRDGLPAEAIL--LYSPED 338 (590)
T ss_pred CHHHHHHHHhhccCCCCcceEEE--eecccc
Confidence 99999999999999998877554 444343
No 84
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.36 E-value=2.5e-11 Score=136.15 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=89.5
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
|+|||+....+..++...|....+++..|+|..++..|..+..+|.+.. ..+|+++++++.|+|....+.||-||||-
T Consensus 332 KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kae--sgIL~cTDVaARGlD~P~V~~VvQ~~~P~ 409 (543)
T KOG0342|consen 332 KIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAE--SGILVCTDVAARGLDIPDVDWVVQYDPPS 409 (543)
T ss_pred eEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcc--cceEEecchhhccCCCCCceEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999753 44566779999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCc
Q 001680 959 NPTTEDQAVDRAHRIGQT 976 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~ 976 (1032)
+|..|+.|+||..|-|-+
T Consensus 410 d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 410 DPEQYIHRVGRTAREGKE 427 (543)
T ss_pred CHHHHHHHhccccccCCC
Confidence 999999999999997765
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=3.2e-11 Score=144.02 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=68.0
Q ss_pred HHHHHhhhc--CceEEeeCCCCCHHHH--HHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC--CC-C----
Q 001680 892 LVENSLNQH--CIQYRRLDGTMSLPAR--DRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW--WN-P---- 960 (1032)
Q Consensus 892 ~L~~~L~~~--gi~~~~l~Gs~s~~eR--~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~--WN-p---- 960 (1032)
.+++.|.+. +.++.++|+.++..++ ++++++|.++ ++.||+ .|+..+.|+++...+.|+++|.+ .+ |
T Consensus 273 ~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 273 QVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 344444444 5778999999876655 8999999965 666665 56889999999999998766554 33 3
Q ss_pred -----ChHHHHhHhhhccCCcccEEEEEEE
Q 001680 961 -----TTEDQAVDRAHRIGQTRPVTVTRLT 985 (1032)
Q Consensus 961 -----~~e~QAigRi~RiGQ~k~V~VyrLi 985 (1032)
..+.|+.||+.|-+..-.|.|..+-
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 3578999999998876666654433
No 86
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.35 E-value=9.1e-11 Score=143.28 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=95.2
Q ss_pred eEEEEeccHHHHHHHHHHhhhcC-ceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHC-IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW 957 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~g-i~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~ 957 (1032)
.+|||++-..+.+.+...|.+.+ ..+..-|||.+.++|..+-++|+++ +.+++++| .+...||+.-..+.||+|..|
T Consensus 255 ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G-~lravV~T-SSLELGIDiG~vdlVIq~~SP 332 (814)
T COG1201 255 TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG-ELKAVVAT-SSLELGIDIGDIDLVIQLGSP 332 (814)
T ss_pred cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-CceEEEEc-cchhhccccCCceEEEEeCCc
Confidence 78999999999999999999987 8888899999999999999999987 58887755 899999999999999999999
Q ss_pred CCCChHHHHhHhhh-ccCCcccEEEEEEEeCCCHHHHHHHHH
Q 001680 958 WNPTTEDQAVDRAH-RIGQTRPVTVTRLTIRDTVEDRILKLQ 998 (1032)
Q Consensus 958 WNp~~e~QAigRi~-RiGQ~k~V~VyrLi~~~TiEe~I~~lq 998 (1032)
-.-+...||+||++ |+|..- -..+++.+ .++.+.-+.
T Consensus 333 ~sV~r~lQRiGRsgHr~~~~S---kg~ii~~~-r~dllE~~v 370 (814)
T COG1201 333 KSVNRFLQRIGRAGHRLGEVS---KGIIIAED-RDDLLECLV 370 (814)
T ss_pred HHHHHHhHhccccccccCCcc---cEEEEecC-HHHHHHHHH
Confidence 99999999999985 455532 33445555 555444433
No 87
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.35 E-value=6.8e-11 Score=152.60 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=68.0
Q ss_pred eEEEEeccH---HHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEee---cCCCcccccccc-CCEE
Q 001680 879 KSIVFSQWT---RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS---LKAGNLGLNMVA-ASHV 951 (1032)
Q Consensus 879 KvIIFSqf~---~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlS---tkagg~GLNL~~-A~~V 951 (1032)
++|||++.. ..++.|...|.+.|+++..++|+++ ++.+++|.++ ++.||+.+ +++++.||++.. ..+|
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccccCcccccCCCCccccEE
Confidence 789999988 9999999999999999999999986 3789999976 88999987 689999999999 7999
Q ss_pred EEecCC
Q 001680 952 ILLDLW 957 (1032)
Q Consensus 952 I~~Dp~ 957 (1032)
||||+|
T Consensus 403 I~~~~P 408 (1171)
T TIGR01054 403 VFLGVP 408 (1171)
T ss_pred EEECCC
Confidence 999999
No 88
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.34 E-value=2e-12 Score=115.01 Aligned_cols=81 Identities=30% Similarity=0.503 Sum_probs=74.4
Q ss_pred HHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhh
Q 001680 892 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAH 971 (1032)
Q Consensus 892 ~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~ 971 (1032)
.|...|...++.+..++|+++.++|.++++.|+++. . .+|+++.++++|+|++.+++||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK-I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC-C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 467788888999999999999999999999999753 3 66778899999999999999999999999999999999999
Q ss_pred ccC
Q 001680 972 RIG 974 (1032)
Q Consensus 972 RiG 974 (1032)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 89
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.32 E-value=1e-10 Score=146.53 Aligned_cols=114 Identities=20% Similarity=0.234 Sum_probs=91.2
Q ss_pred eEEEEeccHHHHHHHH----HHhhhcC----ceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCE
Q 001680 879 KSIVFSQWTRMLDLVE----NSLNQHC----IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASH 950 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~----~~L~~~g----i~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~ 950 (1032)
|.|+|+.+...++.+. ..+...+ ..+..+.|++...+|.++...|+.+ +..+ ++++.+.-.|+++...+.
T Consensus 308 ~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g-~~~~-~~st~AlelgidiG~lda 385 (851)
T COG1205 308 QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG-ELLG-VIATNALELGIDIGSLDA 385 (851)
T ss_pred eEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC-CccE-Eecchhhhhceeehhhhh
Confidence 9999999999999987 4444445 5678899999999999999999976 5555 457899999999999999
Q ss_pred EEEecCCC-CCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHH
Q 001680 951 VILLDLWW-NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 996 (1032)
Q Consensus 951 VI~~Dp~W-Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~ 996 (1032)
||....|- .-....|+.||++|-||.-.+.+ ..-.+-++..+..
T Consensus 386 vi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~--v~~~~~~d~yy~~ 430 (851)
T COG1205 386 VIAYGYPGVSVLSFRQRAGRAGRRGQESLVLV--VLRSDPLDSYYLR 430 (851)
T ss_pred HhhcCCCCchHHHHHHhhhhccCCCCCceEEE--EeCCCccchhhhh
Confidence 99999998 66889999999999995543222 2226667766544
No 90
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=1.2e-10 Score=142.08 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=99.0
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+......+. .+||||......+.|...|.+.|+++..++|
T Consensus 422 ~~~K~~al~~~i~~~~~~g~-----------------------------pvLI~t~si~~se~ls~~L~~~gi~~~~Lna 472 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQ-----------------------------PVLVGTVAIESSERLSHLLDEAGIPHAVLNA 472 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCeeEecC
Confidence 35699999999877655554 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccc---cCC-----EEEEecCCCCCChHHHHhHhhhccCCcccE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV---AAS-----HVILLDLWWNPTTEDQAVDRAHRIGQTRPV 979 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~---~A~-----~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V 979 (1032)
.+...+++.+.+.|+.+ . ++++|..+|.|+++. ... |||.++.|-|...+.|++||++|.|..-..
T Consensus 473 ~~~~~Ea~ii~~ag~~g---~-VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 473 KNHAKEAEIIMNAGQRG---A-VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CcHHHHHHHHHhcCCCc---e-EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 98766666666666544 2 566779999999985 566 999999999999999999999999988654
No 91
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.32 E-value=1.9e-10 Score=143.47 Aligned_cols=106 Identities=25% Similarity=0.295 Sum_probs=89.6
Q ss_pred eEEEEeccHHHHHHHHHHhhh---cCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEec
Q 001680 879 KSIVFSQWTRMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 955 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~---~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~D 955 (1032)
++|||..-...++.+...|.+ .++.++.++|+++.++|.++++.|.++ ..+| |++|..+..||++...++||.++
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkV-lVATnIAErgItIp~V~~VID~G 288 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKV-VLATNIAETSLTIEGIRVVIDSG 288 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEE-EEecchHhhcccccCceEEEEcC
Confidence 899999999999999999987 478899999999999999999999864 4455 56789999999999999999998
Q ss_pred CC----CCCCh--------------HHHHhHhhhccCCcccEEEEEEEeCCC
Q 001680 956 LW----WNPTT--------------EDQAVDRAHRIGQTRPVTVTRLTIRDT 989 (1032)
Q Consensus 956 p~----WNp~~--------------e~QAigRi~RiGQ~k~V~VyrLi~~~T 989 (1032)
.+ +||.. ..||.||++|. ++=..|+|+.+..
T Consensus 289 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 289 LARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred cccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 76 56554 67999999887 4557788887653
No 92
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.31 E-value=2.7e-10 Score=123.14 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=90.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
-++||.|.+.+..+|...|+..++.++.+++-|++++|..++.+|+.+ ..++|| .|++++.||+....+-||++|.|-
T Consensus 256 simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~ili-aTDVAsRGLDIP~V~LVvN~diPr 333 (442)
T KOG0340|consen 256 SIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARILI-ATDVASRGLDIPTVELVVNHDIPR 333 (442)
T ss_pred eEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEEE-EechhhcCCCCCceeEEEecCCCC
Confidence 789999999999999999999999999999999999999999999976 667766 559999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcc
Q 001680 959 NPTTEDQAVDRAHRIGQTR 977 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k 977 (1032)
.|..+..|.||.-|-|..-
T Consensus 334 ~P~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 334 DPKDYIHRVGRTARAGRKG 352 (442)
T ss_pred CHHHHHHhhcchhcccCCc
Confidence 9999999999998888664
No 93
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.30 E-value=1.5e-10 Score=129.61 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=111.9
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.+|+.-|.+....+ |||||..-....+-|...|...|+.+..++|
T Consensus 451 ~~~Kl~wl~~~L~~f~S~g------------------------------kvlifVTKk~~~e~i~a~Lklk~~~v~llhg 500 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSEG------------------------------KVLIFVTKKADAEEIAANLKLKGFNVSLLHG 500 (731)
T ss_pred cHHHHHHHHHHhhhhccCC------------------------------cEEEEEeccCCHHHHHHHhccccceeeeecC
Confidence 3569999988887765544 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCC
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 989 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~T 989 (1032)
++.+.+|.+.+.+|+.. ...|++ .+++...||+....-.||+||..-.-....|+|||..|-|-+ =..|.|+++..
T Consensus 501 dkdqa~rn~~ls~fKkk-~~~Vlv-atDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKD 576 (731)
T KOG0339|consen 501 DKDQAERNEVLSKFKKK-RKPVLV-ATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKD 576 (731)
T ss_pred chhhHHHHHHHHHHhhc-CCceEE-EeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhh
Confidence 99999999999999965 556665 459999999999999999999999999999999999999987 45677887765
Q ss_pred HH
Q 001680 990 VE 991 (1032)
Q Consensus 990 iE 991 (1032)
.+
T Consensus 577 a~ 578 (731)
T KOG0339|consen 577 AE 578 (731)
T ss_pred HH
Confidence 55
No 94
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.28 E-value=2.6e-11 Score=128.80 Aligned_cols=96 Identities=21% Similarity=0.312 Sum_probs=91.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
..||||+.+..+++|+..+.+.|+....++..|.++.|.++..+|.++ .|+.|++| +..-.|++.|+.|.||+||.+-
T Consensus 324 QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVct-DL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCT-DLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeeh-hhhhcccccceeeEEEecCCCC
Confidence 779999999999999999999999999999999999999999999976 89998877 9999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCc
Q 001680 959 NPTTEDQAVDRAHRIGQT 976 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~ 976 (1032)
|+..+..||||.+|+|-.
T Consensus 402 ~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHL 419 (459)
T ss_pred CHHHHHHHccCCccCCCc
Confidence 999999999999999964
No 95
>PRK14701 reverse gyrase; Provisional
Probab=99.28 E-value=2.1e-10 Score=150.97 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=78.0
Q ss_pred eEEEEeccHHH---HHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeec---CCCcccccccc-CCEE
Q 001680 879 KSIVFSQWTRM---LDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL---KAGNLGLNMVA-ASHV 951 (1032)
Q Consensus 879 KvIIFSqf~~~---ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlSt---kagg~GLNL~~-A~~V 951 (1032)
.+|||++.... ++.|...|...|+++..++|+ |.+.+++|.++ ++.||+.+. ..++.||++.. ..+|
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~~gvaaRGIDiP~~Vryv 405 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATYYGTLVRGLDLPERIRFA 405 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCCCCeeEecCccCCccCEE
Confidence 78999987654 589999999999999999984 89999999976 888888774 57889999998 9999
Q ss_pred EEecCCC---CCChHHHHh-------------HhhhccCCc
Q 001680 952 ILLDLWW---NPTTEDQAV-------------DRAHRIGQT 976 (1032)
Q Consensus 952 I~~Dp~W---Np~~e~QAi-------------gRi~RiGQ~ 976 (1032)
||||.|= +...+.|.. ||+.|-|..
T Consensus 406 i~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 406 VFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 9999997 666555555 899988865
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=5.7e-10 Score=136.79 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=109.4
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+....+. -|||||......+.|...|.+.||++..|+|
T Consensus 426 ~~~k~~av~~~i~~~~~~g~-----------------------------PVLVgt~Sie~sE~ls~~L~~~gi~h~vLna 476 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQ-----------------------------PVLVGTVSIEASEFLSQLLKKENIKHQVLNA 476 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCeEeecC
Confidence 45799999999988777666 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc--------------------------------------CCEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------------------------------------ASHV 951 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~--------------------------------------A~~V 951 (1032)
.+...+|+.+.+.|+.+ . ++++|..+|.|+++.= .=||
T Consensus 477 k~~q~Ea~iia~Ag~~G---~-VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~V 552 (896)
T PRK13104 477 KFHEKEAQIIAEAGRPG---A-VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRI 552 (896)
T ss_pred CCChHHHHHHHhCCCCC---c-EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEE
Confidence 99999999999999976 2 5667799999998652 3479
Q ss_pred EEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHH
Q 001680 952 ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 996 (1032)
Q Consensus 952 I~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~ 996 (1032)
|--+.+=|-..+.|..||++|.|..-....|- |+|+.++.
T Consensus 553 IgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~~ 592 (896)
T PRK13104 553 IGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLMR 592 (896)
T ss_pred EeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHH
Confidence 99999999999999999999999886544432 45555554
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.27 E-value=9.2e-10 Score=136.46 Aligned_cols=117 Identities=14% Similarity=0.136 Sum_probs=83.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhc--CceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH--CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~--gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp 956 (1032)
+|-...+....+..+...|+.. ..++...||.|+..+-++++.+|.++ ...|||++ ...-.||++..||++|+-+-
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~~dVLv~T-TIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-EYDVLVCT-TIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-CCCEEEEe-eeeecCcCCCCCceEEEecc
Confidence 4444444555555555555544 34578899999999999999999976 77787755 67889999999999998776
Q ss_pred C-CCCChHHHHhHhhhccCCcccEEEEEEEeCC-----CHHHHHHHHHH
Q 001680 957 W-WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD-----TVEDRILKLQD 999 (1032)
Q Consensus 957 ~-WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~-----TiEe~I~~lq~ 999 (1032)
. +--+..-|--||++|-.++ -+-|-++..+ .-+.|+..++.
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~--AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQ--AYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred ccccHHHHHHhccccCCccce--EEEEEeecCccccCHHHHHHHHHHHh
Confidence 5 6778889999999996544 4555555532 34555555444
No 98
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.25 E-value=6.8e-10 Score=138.92 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=88.9
Q ss_pred eEEEEeccHHHHHHHHHHhhh---cCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEec
Q 001680 879 KSIVFSQWTRMLDLVENSLNQ---HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 955 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~---~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~D 955 (1032)
.+|||..-...++.+...|.. .++.+..++|+++.++|.++++.|.++ .. -+|++|..+..||++...++||.++
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~r-kVlvATnIAErsLtIp~V~~VID~G 291 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RR-KVVLATNIAETSLTIEGIRLVVDSG 291 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-Ce-EEEEecchHHhcccccCceEEEECC
Confidence 899999999999999999987 578899999999999999999999754 44 4566789999999999999999976
Q ss_pred CC----CCCC--------------hHHHHhHhhhccCCcccEEEEEEEeCCCH
Q 001680 956 LW----WNPT--------------TEDQAVDRAHRIGQTRPVTVTRLTIRDTV 990 (1032)
Q Consensus 956 p~----WNp~--------------~e~QAigRi~RiGQ~k~V~VyrLi~~~Ti 990 (1032)
.. |+|. ...||.||++|. .+=+.|+|+.+...
T Consensus 292 l~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 292 LERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 55 3333 478888888886 46788899876543
No 99
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=9.9e-11 Score=131.26 Aligned_cols=100 Identities=22% Similarity=0.316 Sum_probs=91.2
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
++|||.+....+..+.-.|--.|+.+..++|+.++.+|-+.++.|.+. .+.||| +|++++.||++...-.||+|+.|-
T Consensus 428 ~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvLi-aTDvAsRGLDI~gV~tVINy~mP~ 505 (691)
T KOG0338|consen 428 RTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVLI-ATDVASRGLDIEGVQTVINYAMPK 505 (691)
T ss_pred ceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEEE-EechhhccCCccceeEEEeccCch
Confidence 899999999999999999999999999999999999999999999965 777766 569999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCc-ccEE
Q 001680 959 NPTTEDQAVDRAHRIGQT-RPVT 980 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~-k~V~ 980 (1032)
.-..|.+|.||.-|-|.. +.|+
T Consensus 506 t~e~Y~HRVGRTARAGRaGrsVt 528 (691)
T KOG0338|consen 506 TIEHYLHRVGRTARAGRAGRSVT 528 (691)
T ss_pred hHHHHHHHhhhhhhcccCcceEE
Confidence 999999999999998865 3344
No 100
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.25 E-value=2.9e-10 Score=140.62 Aligned_cols=104 Identities=21% Similarity=0.207 Sum_probs=77.8
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcCc
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 378 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1032)
.|+|.|..+|.-.+-. ....|+|-.+|.|||+.|+..|+..-..
T Consensus 31 el~~~qq~av~~~~~~------~~N~li~aPTgsGKTlIA~lai~~~l~~------------------------------ 74 (766)
T COG1204 31 ELFNPQQEAVEKGLLS------DENVLISAPTGSGKTLIALLAILSTLLE------------------------------ 74 (766)
T ss_pred HhhHHHHHHhhccccC------CCcEEEEcCCCCchHHHHHHHHHHHHHh------------------------------
Confidence 7999999998655533 1237999999999999887766542211
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCceEEEcC-hhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCC
Q 001680 379 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 457 (1032)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~ 457 (1032)
..++.+-||| .+|..+=.+|+.+|-.- .++|.++.|+..... ..+.+
T Consensus 75 -----------------------------~~~k~vYivPlkALa~Ek~~~~~~~~~~--GirV~~~TgD~~~~~-~~l~~ 122 (766)
T COG1204 75 -----------------------------GGGKVVYIVPLKALAEEKYEEFSRLEEL--GIRVGISTGDYDLDD-ERLAR 122 (766)
T ss_pred -----------------------------cCCcEEEEeChHHHHHHHHHHhhhHHhc--CCEEEEecCCcccch-hhhcc
Confidence 1245899999 56888888888843222 799999999876543 67899
Q ss_pred CcEEEEcchhhhc
Q 001680 458 YDVVLTTYSIVTN 470 (1032)
Q Consensus 458 ~dVVItTY~~l~~ 470 (1032)
+||+||||+.+-.
T Consensus 123 ~~ViVtT~EK~Ds 135 (766)
T COG1204 123 YDVIVTTPEKLDS 135 (766)
T ss_pred CCEEEEchHHhhH
Confidence 9999999988754
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.20 E-value=1.6e-09 Score=135.37 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=78.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhcC---ceEEeeCCCCCHHHH----HHHHHhhccCccc--cEEEeecCCCccccccccCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPAR----DRAVKDFNTDREI--TVMLMSLKAGNLGLNMVAAS 949 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~g---i~~~~l~Gs~s~~eR----~~~i~~F~~~~~~--~VLLlStkagg~GLNL~~A~ 949 (1032)
++|||++....+..+.+.|++.+ +.+..++|.++..+| .++++.|..++.. ..+|++|++...||++ .++
T Consensus 562 ~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~D 640 (878)
T PRK09694 562 QVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFD 640 (878)
T ss_pred EEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCC
Confidence 89999999999999999998765 678999999999999 4678899433232 3567889999999999 578
Q ss_pred EEEEecCCCCCChHHHHhHhhhccCCc
Q 001680 950 HVILLDLWWNPTTEDQAVDRAHRIGQT 976 (1032)
Q Consensus 950 ~VI~~Dp~WNp~~e~QAigRi~RiGQ~ 976 (1032)
.||....| ...+.||+||++|.|..
T Consensus 641 vlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 641 WLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred eEEECCCC--HHHHHHHHhccCCCCCC
Confidence 88876554 46889999999999875
No 102
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.19 E-value=2.3e-09 Score=119.83 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=100.7
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhc--CceEEeeC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH--CIQYRRLD 908 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~--gi~~~~l~ 908 (1032)
.-|+..|+++|.+... .|+|||-......++....|... ++..+.++
T Consensus 240 ~eK~~~lv~~L~~~~~-------------------------------kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iH 288 (567)
T KOG0345|consen 240 DEKLSQLVHLLNNNKD-------------------------------KKCIVFFPTCASVEYFGKLFSRLLKKREIFSIH 288 (567)
T ss_pred HHHHHHHHHHHhcccc-------------------------------ccEEEEecCcchHHHHHHHHHHHhCCCcEEEec
Confidence 5688899999987432 29999988888888888888765 67889999
Q ss_pred CCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEE
Q 001680 909 GTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 909 Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 981 (1032)
|.|+..+|.++++.|.+. . .-+|++|++++.||+....+.||.||||-+|....+|.||..|.|..-.-.|
T Consensus 289 GK~~q~~R~k~~~~F~~~-~-~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 289 GKMSQKARAKVLEAFRKL-S-NGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred chhcchhHHHHHHHHHhc-c-CceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEE
Confidence 999999999999999963 2 3345577999999999999999999999999999999999999998765444
No 103
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.16 E-value=2.3e-09 Score=121.96 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=90.4
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEE-----
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL----- 953 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~----- 953 (1032)
+.|||+....-...|..+|...|++..-++++++..+|..+-..|.+. ++.+++ +|.|.|.|+++.+ +.|||
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q-~l~~VV-TTAAL~AGVDFPA-SQVIFEsLaM 518 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ-ELAAVV-TTAALAAGVDFPA-SQVIFESLAM 518 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC-CcceEe-ehhhhhcCCCCch-HHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999965 566554 7799999999985 55554
Q ss_pred ecCCCCCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 954 LDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 954 ~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
=--|.+|...+|..||++|.|-...=.||-++-.
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 2346799999999999999997766677777743
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=3.7e-09 Score=129.60 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=101.3
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++.+.+.+....+. .|||||......+.|...|.+.|+++..++|
T Consensus 412 ~~~K~~aI~~~I~~~~~~gr-----------------------------pVLIft~Si~~se~Ls~~L~~~gi~~~vLna 462 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQ-----------------------------PVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCceEeccC
Confidence 35699999999987665555 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc--------------------------------------CCEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------------------------------------ASHV 951 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~--------------------------------------A~~V 951 (1032)
. ..+|++.|..|... ...| +++|..+|.|+++.- .=||
T Consensus 463 k--q~eREa~Iia~Ag~-~g~V-tIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 463 K--NHEREAEIIAQAGR-PGAV-TIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred c--hHHHHHHHHHhcCC-CceE-EEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 5 68999999999854 4445 456799999988554 3489
Q ss_pred EEecCCCCCChHHHHhHhhhccCCcccEEEE
Q 001680 952 ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 982 (1032)
Q Consensus 952 I~~Dp~WNp~~e~QAigRi~RiGQ~k~V~Vy 982 (1032)
|.-+.+=|-..+.|..||++|.|..-....|
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 9999999999999999999999998665443
No 105
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.15 E-value=1.1e-09 Score=125.97 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=103.2
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHh-hhcCceEEeeCC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHCIQYRRLDG 909 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L-~~~gi~~~~l~G 909 (1032)
..|+-++.+++..-.. + -+|||.|..+-...|...| .-.+|.+..++|
T Consensus 372 ~~K~lA~rq~v~~g~~--P-----------------------------P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~ 420 (593)
T KOG0344|consen 372 KGKLLALRQLVASGFK--P-----------------------------PVLIFVQSKERAKQLFEELEIYDNINVDVIHG 420 (593)
T ss_pred hhHHHHHHHHHhccCC--C-----------------------------CeEEEEecHHHHHHHHHHhhhccCcceeeEec
Confidence 5688888888876432 1 6899999999999999999 667899999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCccc-EEEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP-VTVT 982 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~-V~Vy 982 (1032)
..++.+|.+.+++|+.+ .+.||++ |...+.|++++++|.||+||.+-.-..+..+|||.+|-|+.-. ++.|
T Consensus 421 e~~~~qrde~~~~FR~g-~IwvLic-Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 421 ERSQKQRDETMERFRIG-KIWVLIC-TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred ccchhHHHHHHHHHhcc-CeeEEEe-hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 99999999999999976 7777775 5999999999999999999999999999999999999998743 4443
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=8.8e-09 Score=126.12 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=109.5
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+..+.+. .|||||......+.|...|.+.|+++..+++
T Consensus 431 ~~~K~~Aii~ei~~~~~~Gr-----------------------------pVLV~t~sv~~se~ls~~L~~~gi~~~vLna 481 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQ-----------------------------PVLVGTVSIEQSELLARLMVKEKIPHEVLNA 481 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCeEeccC
Confidence 46799999999988887776 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc-------------------------------------CCEEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA-------------------------------------ASHVI 952 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~-------------------------------------A~~VI 952 (1032)
.....+|..+.+.|+.+. ++++|..+|.|+++.= .=|||
T Consensus 482 k~~~~Ea~ii~~Ag~~G~----VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI 557 (908)
T PRK13107 482 KFHEREAEIVAQAGRTGA----VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL 557 (908)
T ss_pred cccHHHHHHHHhCCCCCc----EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE
Confidence 999999999999999763 5667799999998652 34899
Q ss_pred EecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHH
Q 001680 953 LLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILK 996 (1032)
Q Consensus 953 ~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~ 996 (1032)
.-+.+=|-..+.|..||++|.|..-....|- |+|+.++.
T Consensus 558 gTerheSrRID~QLrGRaGRQGDPGss~f~l-----SlED~L~r 596 (908)
T PRK13107 558 GTERHESRRIDNQLRGRAGRQGDAGSSRFYL-----SMEDSLMR 596 (908)
T ss_pred ecccCchHHHHhhhhcccccCCCCCceeEEE-----EeCcHHHH
Confidence 9999999999999999999999876543322 44555544
No 107
>COG4889 Predicted helicase [General function prediction only]
Probab=99.13 E-value=6.5e-10 Score=130.81 Aligned_cols=77 Identities=26% Similarity=0.248 Sum_probs=60.6
Q ss_pred CceEEeeCCCCCHHHHHHHHHhhcc-Cc-cccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCccc
Q 001680 901 CIQYRRLDGTMSLPARDRAVKDFNT-DR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 978 (1032)
Q Consensus 901 gi~~~~l~Gs~s~~eR~~~i~~F~~-~~-~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 978 (1032)
.+...-+||.|...+|.+....=+. .+ +++ +|-..++.++|++...-+.|||+||--.-....|+.||+-|----|.
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neck-IlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECK-ILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchhe-eeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 4556678999999999665544332 22 444 45677999999999999999999999888889999999999755443
No 108
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.10 E-value=7.3e-10 Score=125.49 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=88.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
+.||||+..+-+..|.-.|...+|+-..++..|.+++|-+-+++|.+.+ ..+|+.|++++.||+.+...|||||..|-
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~--~~VLiaTDVAARGLDIp~V~HVIHYqVPr 542 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP--SGVLIATDVAARGLDIPGVQHVIHYQVPR 542 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC--CeEEEeehhhhccCCCCCcceEEEeecCC
Confidence 8999999999999999999999999999999999999999999999754 45666779999999999999999999999
Q ss_pred CCChHHHHhHhhhccCC
Q 001680 959 NPTTEDQAVDRAHRIGQ 975 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ 975 (1032)
.-..|..|-||.-|-+.
T Consensus 543 tseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANS 559 (731)
T ss_pred ccceeEecccccccccC
Confidence 99999999999999763
No 109
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.03 E-value=2.1e-09 Score=113.57 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=103.6
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcCc
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 378 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1032)
.+++||.+++.-+.+ ++..+++-.+|.|||+..+..+......
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~------------------------------ 63 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDP------------------------------ 63 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHh------------------------------
Confidence 489999999988875 2457999999999999854444332111
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC-cccc-
Q 001680 379 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKD-PVEL- 455 (1032)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~-~~~l- 455 (1032)
........+|||||.. ++.||...+.++... ...++..++|...... ...+
T Consensus 64 -------------------------~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (203)
T cd00268 64 -------------------------SPKKDGPQALILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLK 117 (203)
T ss_pred -------------------------hcccCCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhc
Confidence 0001224589999965 889999999887654 3678888888664321 1222
Q ss_pred CCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccc
Q 001680 456 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 535 (1032)
Q Consensus 456 ~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~~ 535 (1032)
...+|+|+|.+.+...+... .+.--
T Consensus 118 ~~~~iiv~T~~~l~~~l~~~-------------------------------------------------------~~~~~ 142 (203)
T cd00268 118 RGPHIVVATPGRLLDLLERG-------------------------------------------------------KLDLS 142 (203)
T ss_pred CCCCEEEEChHHHHHHHHcC-------------------------------------------------------CCChh
Confidence 37899999988765432110 01112
Q ss_pred cccEEEEecCcccCCcc-cH-HHHHHHhcc-cCcEEEEeccCC
Q 001680 536 GWFRVVLDEAQTIKNHR-TQ-VARACCSLR-AKRRWCLSGTPI 575 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~-S~-~~kal~~L~-a~~r~lLTGTPi 575 (1032)
.+.++|+||+|.+.+.. .. ....+..+. ....+++||||-
T Consensus 143 ~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 143 KVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred hCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 35689999999986543 12 222233343 567899999997
No 110
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=1.7e-07 Score=115.42 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=105.0
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.|......+. .|||||......+.|...|...||++..|++
T Consensus 580 ~~eK~~Ali~~I~~~~~~gr-----------------------------pVLIft~Sve~sE~Ls~~L~~~gI~h~vLna 630 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQ-----------------------------PVLVGTASVEVSETLSRMLRAKRIAHNVLNA 630 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCCceeecC
Confidence 35699999999988766555 9999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCC--------EEEEecCCCCCChHHHHhHhhhccCCcccEEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS--------HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~--------~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 981 (1032)
...+|++.|..|... ... ++++|..+|.|+++.-.. +||..+.+-+...+.|++||++|.|..=....
T Consensus 631 --kq~~REa~Iia~AG~-~g~-VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f 706 (1025)
T PRK12900 631 --KQHDREAEIVAEAGQ-KGA-VTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF 706 (1025)
T ss_pred --CHHHhHHHHHHhcCC-CCe-EEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE
Confidence 578999999999854 334 455779999999988433 45889999999999999999999998755422
Q ss_pred EEEEeCCCHHHHHHHH
Q 001680 982 TRLTIRDTVEDRILKL 997 (1032)
Q Consensus 982 yrLi~~~TiEe~I~~l 997 (1032)
|+ |.|+.++.+
T Consensus 707 --fv---SleD~Lmr~ 717 (1025)
T PRK12900 707 --YV---SLEDELMRL 717 (1025)
T ss_pred --Ee---chhHHHHHh
Confidence 11 455555543
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.95 E-value=4.3e-07 Score=112.22 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=102.8
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 910 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs 910 (1032)
..++..+++.|......+. ++|||+.....++.|...|...|+++..++|.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~-----------------------------~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~ 479 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGE-----------------------------RVLVTTLTKRMAEDLTDYLKELGIKVRYLHSD 479 (652)
T ss_pred cccHHHHHHHHHHHHhCCC-----------------------------EEEEEeCCHHHHHHHHHHHhhcceeEEEEECC
Confidence 3467788888887766555 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC-----CCCCChHHHHhHhhhccCCcccEEEEEEE
Q 001680 911 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL-----WWNPTTEDQAVDRAHRIGQTRPVTVTRLT 985 (1032)
Q Consensus 911 ~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp-----~WNp~~e~QAigRi~RiGQ~k~V~VyrLi 985 (1032)
++..+|.++++.|..+ .+.|+ +++...+.|+++..++.||++|. +-++..+.|++||+.|- . .=.++.|+
T Consensus 480 ~~~~~R~~~l~~f~~g-~i~vl-V~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~ 554 (652)
T PRK05298 480 IDTLERVEIIRDLRLG-EFDVL-VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYA 554 (652)
T ss_pred CCHHHHHHHHHHHHcC-CceEE-EEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEe
Confidence 9999999999999865 55555 56699999999999999999996 45788999999999994 2 22344455
Q ss_pred eC
Q 001680 986 IR 987 (1032)
Q Consensus 986 ~~ 987 (1032)
..
T Consensus 555 ~~ 556 (652)
T PRK05298 555 DK 556 (652)
T ss_pred cC
Confidence 43
No 112
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.94 E-value=4e-08 Score=126.09 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=86.0
Q ss_pred eEEEEeccHHHHHHHHHHhhhcC---ceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEec
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 955 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~g---i~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~D 955 (1032)
++|||..-...++.+...|.+.+ +.+..++|+++.++|.++++.+ +. +-+|++|..+..||++....+||.++
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATNIAEtSLTIpgV~yVIDsG 356 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATNVAETSLTVPGIHYVIDTG 356 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEeccHHHhccccCCeeEEEeCC
Confidence 89999999999999999998774 4578899999999999885543 22 44667889999999999999999987
Q ss_pred CC----C--------------CCChHHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001680 956 LW----W--------------NPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 991 (1032)
Q Consensus 956 p~----W--------------Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiE 991 (1032)
.. + +.+...||.||++|.| +=..|+|+++...+
T Consensus 357 l~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 357 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred CccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 32 1 3357889999999997 66778999876443
No 113
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.93 E-value=2e-08 Score=122.55 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=105.3
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+..|+++|.+..+.+ |+|||++--.-++.|.+.|.+.|+....++|
T Consensus 596 e~eKf~kL~eLl~e~~e~~------------------------------~tiiFv~~qe~~d~l~~~L~~ag~~~~slHG 645 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDG------------------------------KTIIFVDKQEKADALLRDLQKAGYNCDSLHG 645 (997)
T ss_pred chHHHHHHHHHHHHHhhcC------------------------------CEEEEEcCchHHHHHHHHHHhcCcchhhhcC
Confidence 4679999999998876633 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
..++.+|...|++|+++ . ..||+.|+..+.||+...-..||+||.+---..+..|.||..|-|.+- .-|-|+..
T Consensus 646 gv~q~dR~sti~dfK~~-~-~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 646 GVDQHDRSSTIEDFKNG-V-VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred CCchHHHHhHHHHHhcc-C-ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999975 3 456667799999999999999999999977777888888888887766 33445544
No 114
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=98.92 E-value=1.3e-08 Score=112.96 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=91.1
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeec----------------------
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSL---------------------- 936 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlSt---------------------- 936 (1032)
|+|||.+-.+..-.|.-.|++.||+.+.++|.++...|..+|++||.+ -..++|.|-
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ceeEEEEccCccchhhhhccccccccccCCC
Confidence 999999999999999999999999999999999999999999999965 566666553
Q ss_pred --C-C---------CccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 937 --K-A---------GNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 937 --k-a---------gg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
+ + .+.|++++..+.||+||.|-++..|..|+||..|-|.+-.+ .-|+...
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta--lSfv~P~ 410 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA--LSFVSPK 410 (569)
T ss_pred CccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce--EEEecch
Confidence 0 1 24799999999999999999999999999999998766443 3355443
No 115
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.88 E-value=1.5e-08 Score=110.52 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=91.4
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
..||||+-..++.+|...|.+.|..+..++|.+...+|.+++++|+.+ .-+| |++|.+.+.|++.+..+.||+||+|-
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kV-LitTnV~ARGiDv~qVs~VvNydlP~ 409 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKV-LITTNVCARGIDVAQVSVVVNYDLPV 409 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceE-EEEechhhcccccceEEEEEecCCcc
Confidence 679999999999999999999999999999999999999999999975 4455 55779999999999999999999995
Q ss_pred ------CCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 959 ------NPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 959 ------Np~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
.+.+|..||||.+|+|.+ .+-| +|+-.
T Consensus 410 ~~~~~pD~etYlHRiGRtGRFGkk-G~a~-n~v~~ 442 (477)
T KOG0332|consen 410 KYTGEPDYETYLHRIGRTGRFGKK-GLAI-NLVDD 442 (477)
T ss_pred ccCCCCCHHHHHHHhccccccccc-ceEE-Eeecc
Confidence 466899999999999965 3333 35533
No 116
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.87 E-value=8e-08 Score=122.97 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=85.0
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCce---EEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEec
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQ---YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 955 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~---~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~D 955 (1032)
++|||..-...++.+.+.|...+++ +..++|+++.++|.++++.+ +. +-+|++|..+..||++...++||.++
T Consensus 288 dILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~-rkIIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SG-RRIVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CC-eeEEEeccHHhhccccCcceEEEECC
Confidence 8999999999999999999988765 56789999999999987653 23 44566889999999999999999975
Q ss_pred ---------------CCCCC---ChHHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001680 956 ---------------LWWNP---TTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 991 (1032)
Q Consensus 956 ---------------p~WNp---~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiE 991 (1032)
++-.| +.+.||.||++|.+ +=..|+|+++...+
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~~ 414 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDFL 414 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHHH
Confidence 33333 56889999888883 55677888765443
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=4.3e-07 Score=109.17 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=100.5
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+....+. -|||.+.....-+.|...|.+.||++..++.
T Consensus 409 ~~~k~~Aii~ei~~~~~~Gr-----------------------------PVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA 459 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQ-----------------------------PVLVGTHDVAESEELAERLRAAGVPAVVLNA 459 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCC-----------------------------CEEEEeCCHHHHHHHHHHHHhCCCcceeecc
Confidence 45799999999988877766 8999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc---------------CCEEEEecCCCCCChHHHHhHhhhccC
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA---------------ASHVILLDLWWNPTTEDQAVDRAHRIG 974 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~---------------A~~VI~~Dp~WNp~~e~QAigRi~RiG 974 (1032)
... ++-.++|.+-- ...-+.++|.-+|.|-++.- .=|||.-+.+=|-..+.|..||+.|.|
T Consensus 460 k~~-~~EA~IIa~AG---~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 460 KND-AEEARIIAEAG---KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred Cch-HhHHHHHHhcC---CCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 643 33345555433 33345567799999987653 448999999999999999999999999
Q ss_pred CcccEEEEEEEeCCCHHHHHHHH
Q 001680 975 QTRPVTVTRLTIRDTVEDRILKL 997 (1032)
Q Consensus 975 Q~k~V~VyrLi~~~TiEe~I~~l 997 (1032)
..-....|- |+|+.++.+
T Consensus 536 DpGss~f~l-----SleDdl~~~ 553 (764)
T PRK12326 536 DPGSSVFFV-----SLEDDVVAA 553 (764)
T ss_pred CCCceeEEE-----EcchhHHHh
Confidence 886544432 445555543
No 118
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.85 E-value=7.6e-09 Score=105.62 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcCcccc
Q 001680 302 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKV 381 (1032)
Q Consensus 302 pyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1032)
|+|.+++.-+++. ...|+.-.+|.|||..++..+......
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~~~--------------------------------- 41 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRLQE--------------------------------- 41 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhhcc---------------------------------
Confidence 8999999888732 126999999999999887555432211
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCCceEEEcChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-C-ccc-cCC
Q 001680 382 KETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-D-PVE-LAK 457 (1032)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~-~-~~~-l~~ 457 (1032)
.....+||+||.. ++.|-.+++.+++.. ..+++..++|..... . ... ..+
T Consensus 42 -------------------------~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (169)
T PF00270_consen 42 -------------------------GKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSNQ 95 (169)
T ss_dssp -------------------------TSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHTT
T ss_pred -------------------------CCCceEEEEeecccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 1113589999955 889999999998865 257888888766422 1 112 257
Q ss_pred CcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccccc
Q 001680 458 YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGW 537 (1032)
Q Consensus 458 ~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~~~w 537 (1032)
.+|+|+|++.+...+... .+.-...
T Consensus 96 ~~ilv~T~~~l~~~~~~~-------------------------------------------------------~~~~~~~ 120 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNG-------------------------------------------------------KINISRL 120 (169)
T ss_dssp SSEEEEEHHHHHHHHHTT-------------------------------------------------------SSTGTTE
T ss_pred ccccccCcchhhcccccc-------------------------------------------------------ccccccc
Confidence 999999999987532110 0011226
Q ss_pred cEEEEecCcccCCc--ccHHHHHHHhc---ccCcEEEEeccCCCCChHH
Q 001680 538 FRVVLDEAQTIKNH--RTQVARACCSL---RAKRRWCLSGTPIQNSIDD 581 (1032)
Q Consensus 538 ~rVIlDEAH~iKN~--~S~~~kal~~L---~a~~r~lLTGTPi~N~l~D 581 (1032)
++||+||+|.+... .......+..+ +..+.+++||||- ..+.+
T Consensus 121 ~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 121 SLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp SEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred eeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 78999999999663 22233333333 2456899999997 55544
No 119
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.79 E-value=6.3e-07 Score=109.03 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=61.9
Q ss_pred eCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCCh----------HHHHhHhhhccCCc
Q 001680 907 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTT----------EDQAVDRAHRIGQT 976 (1032)
Q Consensus 907 l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~----------e~QAigRi~RiGQ~ 976 (1032)
-+.+|...+|+-+=+.|..+ .++|+. +|...+-|+||++-..+|-=-+.|+... ..|-+||++|.+=.
T Consensus 402 HhAGm~r~DR~l~E~~F~~G-~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKEG-HIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred cccccchhhHHHHHHHHhcC-CceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 45678889999999999965 667755 5688999999998777776666677664 67999999998755
Q ss_pred ccEEEEEEEeCCCHH
Q 001680 977 RPVTVTRLTIRDTVE 991 (1032)
Q Consensus 977 k~V~VyrLi~~~TiE 991 (1032)
..=..+.+...++++
T Consensus 480 ~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLD 494 (1230)
T ss_pred CCceEEEEecccHHH
Confidence 544444555555543
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.78 E-value=4.7e-07 Score=113.47 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=96.5
Q ss_pred ceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhcc--CccccEEEeecCCCccccccccCCEEEEec
Q 001680 878 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT--DREITVMLMSLKAGNLGLNMVAASHVILLD 955 (1032)
Q Consensus 878 ~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~--~~~~~VLLlStkagg~GLNL~~A~~VI~~D 955 (1032)
.|++|.++-...+.-++..|+..+.+++.+|+.+....|.+.++...+ ..+-..++++|++.-+|+|+. .+.+| -|
T Consensus 441 ~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI-Te 518 (733)
T COG1203 441 KKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI-TE 518 (733)
T ss_pred CcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee-ec
Confidence 399999999999999999999998889999999999999998886553 123345677889999999998 44433 33
Q ss_pred CCCCCChHHHHhHhhhccC--CcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 001680 956 LWWNPTTEDQAVDRAHRIG--QTRPVTVTRLTIRDTVEDRILKLQDDKRKMVA 1006 (1032)
Q Consensus 956 p~WNp~~e~QAigRi~RiG--Q~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~ 1006 (1032)
+. -.....||.|||+|-| ....++|+...-......+.++....+.+...
T Consensus 519 ~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (733)
T COG1203 519 LA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLE 570 (733)
T ss_pred CC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccc
Confidence 32 2357789999999999 55568888877777777776666665554443
No 121
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.77 E-value=2e-08 Score=109.38 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=113.5
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 910 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs 910 (1032)
-.|+-.|++.|++.. + +||||+.-..-+|-|.++|--.|+..+.|+|+
T Consensus 407 EaKiVylLeCLQKT~---P-----------------------------pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGG 454 (610)
T KOG0341|consen 407 EAKIVYLLECLQKTS---P-----------------------------PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGG 454 (610)
T ss_pred hhhhhhHHHHhccCC---C-----------------------------ceEEEeccccChHHHHHHHHHccceeEEeecC
Confidence 579999999987642 2 89999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCH
Q 001680 911 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 990 (1032)
Q Consensus 911 ~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~Ti 990 (1032)
..+++|..+|+.|+.+ +-.||+ .|++++-||++++..|||+||.|-.-..+..||||.+|-|.+-- -..|+-+++-
T Consensus 455 KDQedR~~ai~afr~g-kKDVLV-ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~ 530 (610)
T KOG0341|consen 455 KDQEDRHYAIEAFRAG-KKDVLV-ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQE 530 (610)
T ss_pred cchhHHHHHHHHHhcC-CCceEE-EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccch
Confidence 9999999999999976 444554 66999999999999999999999888889999999999987743 2346666665
Q ss_pred HHHHHH----HHHHHHH
Q 001680 991 EDRILK----LQDDKRK 1003 (1032)
Q Consensus 991 Ee~I~~----lq~~K~~ 1003 (1032)
|.-++. +++.|++
T Consensus 531 esvLlDLK~LL~EakQ~ 547 (610)
T KOG0341|consen 531 ESVLLDLKHLLQEAKQE 547 (610)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 554443 4555654
No 122
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.73 E-value=1.8e-07 Score=102.14 Aligned_cols=250 Identities=21% Similarity=0.244 Sum_probs=147.3
Q ss_pred CCCCCc-cccCCchHHHHHHHHHHHhhccCC---CcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccc
Q 001680 290 TLPDGL-LSVNLLKHQKIALAWMLQKETRSL---HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEAL 365 (1032)
Q Consensus 290 ~~P~~~-~~~~LrpyQ~~gv~wml~~e~~~~---~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~ 365 (1032)
.+|+.+ ....|=.-|+++|.+..++....+ ...|-+|+|.+|.||-.|+-++|..+...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~----------------- 89 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR----------------- 89 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-----------------
Confidence 345432 234588899999999987765422 23678999999999999999988764322
Q ss_pred cCCCCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeC
Q 001680 366 NLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHG 445 (1032)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G 445 (1032)
+..+++=|-+...|..--.+.+..--.. .+.+.....
T Consensus 90 -----------------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~ 126 (303)
T PF13872_consen 90 -----------------------------------------GRKRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNK 126 (303)
T ss_pred -----------------------------------------CCCceEEEECChhhhhHHHHHHHHhCCC--cccceechh
Confidence 2222344444455766555666543221 333333222
Q ss_pred CCCCCCccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCc
Q 001680 446 GSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 525 (1032)
Q Consensus 446 ~~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~ 525 (1032)
-+.. +. .--+..|+.+||+.|....... .++..
T Consensus 127 ~~~~-~~-~~~~~GvlF~TYs~L~~~~~~~---------------------------~~~~s------------------ 159 (303)
T PF13872_consen 127 FKYG-DI-IRLKEGVLFSTYSTLISESQSG---------------------------GKYRS------------------ 159 (303)
T ss_pred hccC-cC-CCCCCCccchhHHHHHhHHhcc---------------------------CCccc------------------
Confidence 2111 11 1125679999999998652110 00000
Q ss_pred ccCCCCCcc-ccc------cEEEEecCcccCCccc------HHHHHHHhcc----cCcEEEEeccCCCCChHHHHHHHHH
Q 001680 526 DYGCGPLAK-VGW------FRVVLDEAQTIKNHRT------QVARACCSLR----AKRRWCLSGTPIQNSIDDLYSYFRF 588 (1032)
Q Consensus 526 ~~~~~~L~~-~~w------~rVIlDEAH~iKN~~S------~~~kal~~L~----a~~r~lLTGTPi~N~l~DL~sll~f 588 (1032)
.|.+ +.| .+||+||||..||..+ ++..++..|+ .-+.+-.|||.... +..|--+-++
T Consensus 160 -----Rl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RL 233 (303)
T PF13872_consen 160 -----RLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRL 233 (303)
T ss_pred -----hHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceeeeeeec
Confidence 0111 112 2799999999999654 6667776663 34688899998743 3333222221
Q ss_pred --Hcc-CCcchhHHHHHHhccccccCchhHHHHHHHHH--HHHHhhhccCccccCCCcccCCCCeEEEEEecCCHHHHHH
Q 001680 589 --LKY-DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVL--RAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 663 (1032)
Q Consensus 589 --L~p-~~~~~~~~F~~~~~~pi~~~~~~~~~~L~~~L--~~~~lRRtk~~v~~g~p~i~LP~k~~~~v~v~ls~~er~l 663 (1032)
-.+ .+|.++.+|...++ ++....++.+..-| ...+++|.. .+-....+++.+++++++.++
T Consensus 234 GLWG~gtpf~~~~~f~~a~~----~gGv~amE~vA~dlKa~G~yiaR~L----------Sf~gvef~~~e~~l~~~~~~~ 299 (303)
T PF13872_consen 234 GLWGPGTPFPDFDDFLEAME----KGGVGAMEMVAMDLKARGMYIARQL----------SFEGVEFEIEEVPLTPEQIKM 299 (303)
T ss_pred cccCCCCCCCCHHHHHHHHH----hcCchHHHHHHHHHHhcchheeeec----------ccCCceEEEEEecCCHHHHHH
Confidence 111 24667777776654 23344444444433 245666654 345567889999999999999
Q ss_pred HHH
Q 001680 664 YKK 666 (1032)
Q Consensus 664 Y~~ 666 (1032)
|+.
T Consensus 300 Yd~ 302 (303)
T PF13872_consen 300 YDA 302 (303)
T ss_pred hcC
Confidence 974
No 123
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.68 E-value=7.9e-07 Score=98.79 Aligned_cols=225 Identities=16% Similarity=0.191 Sum_probs=130.1
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcch---------HHHHHHHHHHHHhhcCccccccccccccccc
Q 001680 648 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN---------YANILLMLLRLRQACDHPLLVKEYDFDSVGK 718 (1032)
Q Consensus 648 ~~~~v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~---------~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~ 718 (1032)
.+..+.++|+..|+++|+.+.......+..+......... ...+-.++.+|+.+|+||.|+.+......
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~-- 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ-- 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S---
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc--
Confidence 3678899999999999999999888888887755443332 25567788999999999999764322110
Q ss_pred chHHHhhcCChHHHHHHHhhhccccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccccc
Q 001680 719 ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK 798 (1032)
Q Consensus 719 ~~~e~~~~l~~~~~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~ 798 (1032)
+..
T Consensus 82 --------ll~--------------------------------------------------------------------- 84 (297)
T PF11496_consen 82 --------LLL--------------------------------------------------------------------- 84 (297)
T ss_dssp --------S-S---------------------------------------------------------------------
T ss_pred --------ccc---------------------------------------------------------------------
Confidence 000
Q ss_pred cccccccCCCCCCCCCCCccccccCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCc
Q 001680 799 TTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPI 878 (1032)
Q Consensus 799 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1032)
........+.|+|+..|-++|..+..... ...+.
T Consensus 85 ----------------------~e~~~~~~~tS~KF~~L~~Li~~li~~~~------------------------~~~~~ 118 (297)
T PF11496_consen 85 ----------------------SEPAEWLAYTSGKFQFLNDLIDSLIDRDR------------------------REYPL 118 (297)
T ss_dssp ----------------------TTHHHHHHHT-HHHHHHHHHHHHH-----------------------------TTSSE
T ss_pred ----------------------chHHHHHHHcCchHHHHHHHHHHHHhhhc------------------------ccCCc
Confidence 00001112469999999999888743211 11234
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHH------------Hhhcc--CccccEEEeecCCCcc---
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAV------------KDFNT--DREITVMLMSLKAGNL--- 941 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i------------~~F~~--~~~~~VLLlStkagg~--- 941 (1032)
++||.++...++|+|+..|...++.|.+++|..-..+....- ..... ..++.|.|++++-...
T Consensus 119 ~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~ 198 (297)
T PF11496_consen 119 HILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKP 198 (297)
T ss_dssp EEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS
T ss_pred eEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCC
Confidence 999999999999999999999999999999976544443322 11111 2356677777654433
Q ss_pred -ccccccCCEEEEecCCCCCChHHH-HhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHH
Q 001680 942 -GLNMVAASHVILLDLWWNPTTEDQ-AVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQD 999 (1032)
Q Consensus 942 -GLNL~~A~~VI~~Dp~WNp~~e~Q-AigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~ 999 (1032)
.++-...+.||-+|+.+++....- .+-..+|-+ +.+-|++|++.+|+|--++....
T Consensus 199 ~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 199 PLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp --TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEEEETTSHHHHHHHHTT
T ss_pred CccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEEeeCCCHHHHHHHccC
Confidence 233445789999999999987553 333333333 88999999999999987766554
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=4.9e-06 Score=102.74 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=99.0
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+....+. -|||-+.....-+.|...|.+.||++..++.
T Consensus 550 ~~~k~~ai~~ei~~~~~~gr-----------------------------PvLigt~si~~se~ls~~L~~~gi~h~vLNa 600 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGN-----------------------------PILIGTESVEVSEKLSRILRQNRIEHTVLNA 600 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCcceeccc
Confidence 35799999998888777665 7999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc--------CCEEEEecCCCCCChHHHHhHhhhccCCcccEEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--------ASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~--------A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 981 (1032)
... +.-.++|.+-- ...-+.++|..+|.|.++.- .=|||.-..+-|...+.|..||+.|.|..-....
T Consensus 601 k~~-~~Ea~iia~AG---~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 601 KNH-AQEAEIIAGAG---KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred chh-hhHHHHHHhcC---CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 642 23334554332 33345567799999977553 4489999999999999999999999998865433
Q ss_pred EEEEeCCCHHHHHHHH
Q 001680 982 TRLTIRDTVEDRILKL 997 (1032)
Q Consensus 982 yrLi~~~TiEe~I~~l 997 (1032)
|- |.|+.++.+
T Consensus 677 ~l-----SlEDdL~~~ 687 (970)
T PRK12899 677 FL-----SFEDRLMRL 687 (970)
T ss_pred EE-----EcchHHHHH
Confidence 22 455555543
No 125
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.63 E-value=7.1e-06 Score=89.24 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=76.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhc-Cc-eEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH-CI-QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~-gi-~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp 956 (1032)
-++||.....+++.+.+.|++. +. ..+.++... ..|.+.++.|+++ ... +|++|.....|+.+...+..++=.-
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G-~~~-lLiTTTILERGVTfp~vdV~Vlgae 382 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDG-KIT-LLITTTILERGVTFPNVDVFVLGAE 382 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcC-ceE-EEEEeehhhcccccccceEEEecCC
Confidence 7899999999999999999543 32 224444433 6899999999965 444 5667789999999999998777544
Q ss_pred C--CCCChHHHHhHhhhccCCc--ccEEEEEEE
Q 001680 957 W--WNPTTEDQAVDRAHRIGQT--RPVTVTRLT 985 (1032)
Q Consensus 957 ~--WNp~~e~QAigRi~RiGQ~--k~V~VyrLi 985 (1032)
. +..+...|--||++|---. -+|..+++-
T Consensus 383 h~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 383 HRVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred cccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 4 8899999999999995432 235555443
No 126
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.62 E-value=2.6e-07 Score=113.45 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=104.4
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 910 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs 910 (1032)
..++..|++.|......+. ++|||+.....++.|...|...|+++..++|.
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~-----------------------------~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~ 475 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNE-----------------------------RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSE 475 (655)
T ss_pred cchHHHHHHHHHHHHcCCC-----------------------------EEEEEECCHHHHHHHHHHHhhhccceeeeeCC
Confidence 4577888888887766555 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEec-----CCCCCChHHHHhHhhhccCCcccEEEEEEE
Q 001680 911 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD-----LWWNPTTEDQAVDRAHRIGQTRPVTVTRLT 985 (1032)
Q Consensus 911 ~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~D-----p~WNp~~e~QAigRi~RiGQ~k~V~VyrLi 985 (1032)
++..+|.++++.|..+ .+.|++ ++...++|+++..++.||++| .+-+...+.|++||+.|.. . -.|+.|+
T Consensus 476 ~~~~eR~~~l~~fr~G-~i~VLV-~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~ 550 (655)
T TIGR00631 476 IDTLERVEIIRDLRLG-EFDVLV-GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYA 550 (655)
T ss_pred CCHHHHHHHHHHHhcC-CceEEE-EcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEE
Confidence 9999999999999865 566654 668999999999999999999 4567789999999999973 2 2344455
Q ss_pred eCCC
Q 001680 986 IRDT 989 (1032)
Q Consensus 986 ~~~T 989 (1032)
...|
T Consensus 551 ~~~~ 554 (655)
T TIGR00631 551 DKIT 554 (655)
T ss_pred cCCC
Confidence 5444
No 127
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.59 E-value=7.5e-07 Score=111.67 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=95.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
-.||||....+.+.+...|...|+....|+++++.++|+.+.+.|..+ +++|++++ =|.|-|+|-.+.--||||..|=
T Consensus 487 s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~VivAT-VAFGMGIdK~DVR~ViH~~lPk 564 (941)
T KOG0351|consen 487 SGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRVIVAT-VAFGMGIDKPDVRFVIHYSLPK 564 (941)
T ss_pred CeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeEEEEE-eeccCCCCCCceeEEEECCCch
Confidence 679999999999999999999999999999999999999999999987 67776654 8999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEE
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRL 984 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrL 984 (1032)
+-.-+-|-+||++|-|+...++.|+=
T Consensus 565 s~E~YYQE~GRAGRDG~~s~C~l~y~ 590 (941)
T KOG0351|consen 565 SFEGYYQEAGRAGRDGLPSSCVLLYG 590 (941)
T ss_pred hHHHHHHhccccCcCCCcceeEEecc
Confidence 99999999999999999988666543
No 128
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.58 E-value=4e-06 Score=98.84 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=62.8
Q ss_pred HHhhccCccccEEEeecCCCccccccccCCEE--------EEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001680 920 VKDFNTDREITVMLMSLKAGNLGLNMVAASHV--------ILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 991 (1032)
Q Consensus 920 i~~F~~~~~~~VLLlStkagg~GLNL~~A~~V--------I~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiE 991 (1032)
-++|..+ +-.|-||| .|++.|+.||.-.+| |-+++||+...-+|-+||.||-.|........||.+=-=|
T Consensus 850 KqrFM~G-eK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMDG-EKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhccc-cceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 4567754 66777888 899999999985443 6689999999999999999999999866655566554455
Q ss_pred HHHHHHHHHHHHHH
Q 001680 992 DRILKLQDDKRKMV 1005 (1032)
Q Consensus 992 e~I~~lq~~K~~l~ 1005 (1032)
-|...+..++.+-.
T Consensus 928 rRFAS~VAKRLESL 941 (1300)
T KOG1513|consen 928 RRFASIVAKRLESL 941 (1300)
T ss_pred hHHHHHHHHHHHhh
Confidence 56655555555443
No 129
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.53 E-value=1.5e-06 Score=96.23 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=92.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
=-||||.-+...+.+...|...||+...++.+....+|.++.+.|.++ ++.|+. .|-+.|-|++=.....||+.+++-
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~~PvI~-AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN-EIPVIA-ATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-CCCEEE-EEeccccccCCcceeEEEecCchh
Confidence 358999999999999999999999999999999999999999999976 666665 458899999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEE
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTR 983 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~Vyr 983 (1032)
|-+.+-|--||++|-|-..-+..|+
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hhHHHHHhccccccCCCccceeeee
Confidence 9999999999999999876666654
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.53 E-value=4.8e-06 Score=102.67 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=95.1
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+....+. -|||-+.....-+.|...|.+.||++-+++.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~Gr-----------------------------PVLVGT~SVe~SE~ls~~L~~~gi~h~VLNA 481 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGR-----------------------------PVLVGTATIETSEHMSNLLKKEGIEHKVLNA 481 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEEeCCHHHHHHHHHHHHHcCCcHHHhcc
Confidence 46799999999998887776 8999999999999999999999999988887
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccc-------------------------------------cCCEEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV-------------------------------------AASHVI 952 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~-------------------------------------~A~~VI 952 (1032)
... ++-.++|.+- + ...-+.++|.-+|.|-++. ..=|||
T Consensus 482 k~~-~~EA~IIa~A--G-~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVI 557 (913)
T PRK13103 482 KYH-EKEAEIIAQA--G-RPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVI 557 (913)
T ss_pred ccc-hhHHHHHHcC--C-CCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEE
Confidence 643 3334455432 2 3334555779999998864 244899
Q ss_pred EecCCCCCChHHHHhHhhhccCCcccEEEE
Q 001680 953 LLDLWWNPTTEDQAVDRAHRIGQTRPVTVT 982 (1032)
Q Consensus 953 ~~Dp~WNp~~e~QAigRi~RiGQ~k~V~Vy 982 (1032)
.-+.+=|-..+.|..||++|.|..-....|
T Consensus 558 gTerheSrRID~QLrGRaGRQGDPGsS~f~ 587 (913)
T PRK13103 558 ASERHESRRIDNQLRGRAGRQGDPGSSRFY 587 (913)
T ss_pred eeccCchHHHHHHhccccccCCCCCceEEE
Confidence 999999999999999999999988664443
No 131
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.49 E-value=1.7e-06 Score=96.12 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=104.2
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 910 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs 910 (1032)
..|..+|+.++.+...+ ++.|||+.-...++++...|...|+....+.|+
T Consensus 245 a~K~aaLl~il~~~~~~------------------------------~~t~vf~~tk~hve~~~~ll~~~g~~~s~iyss 294 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIKD------------------------------KQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSS 294 (529)
T ss_pred HHHHHHHHHHHhccccc------------------------------cceeEEecccchHHHHHHHHHhcCCCccccccc
Confidence 56888888888876652 278999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 911 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 911 ~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
+.+..|..-+.+|+.. ... +|+.++.++.|++..--+.||+||.|-.+.....|.||+.|-|.+- ..|-+|+.
T Consensus 295 lD~~aRk~~~~~F~~~-k~~-~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~ 367 (529)
T KOG0337|consen 295 LDQEARKINGRDFRGR-KTS-ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAS 367 (529)
T ss_pred cChHhhhhccccccCC-ccc-eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEec
Confidence 9999999999999864 333 4556699999999999999999999999999999999999998662 33444443
No 132
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.48 E-value=8.1e-06 Score=101.83 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=39.5
Q ss_pred CEEEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHH-HHHHHhhcC
Q 001680 949 SHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKR-KMVASAFGE 1011 (1032)
Q Consensus 949 ~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~-~l~~~~~g~ 1011 (1032)
++||+|||.-...+..|. -|++|-|. ++.||.|+..||+||.-|....+|. ++++.++.+
T Consensus 478 ~~VImYEP~~sfIR~IEv-yra~r~~r--~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIre 538 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEV-YKASRPLR--PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIRE 538 (814)
T ss_pred CEEEEECCChHHHHHHHH-HHccCCCC--CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999997555555551 23344443 3899999999999998665544443 344444433
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.41 E-value=8.1e-06 Score=99.92 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=64.9
Q ss_pred HHHHHhhhc--CceEEeeCCCCCHHH--HHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC--C-CCC---
Q 001680 892 LVENSLNQH--CIQYRRLDGTMSLPA--RDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW--W-NPT--- 961 (1032)
Q Consensus 892 ~L~~~L~~~--gi~~~~l~Gs~s~~e--R~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~--W-Np~--- 961 (1032)
.+++.|... +.++.++|++++..+ -+.+++.|.++ +..||| -|.....|+|+....-|.++|.+ - +|.
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-e~dILi-GTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-EADILI-GTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-CCCeee-cchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 344444443 567889998876543 46789999976 666666 55999999999998888777665 2 222
Q ss_pred ------hHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 962 ------TEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 962 ------~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
.+.|..||++|-+-.-.|.|-.+...
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 45599999999866555555544433
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=4.1e-05 Score=93.81 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=95.1
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+....+. -|||.|......+.|...|.+.||++.+++.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gq-----------------------------PVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQ-----------------------------PILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 46799999998888776665 8999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCC--------EEEEecCCCCCChHHHHhHhhhccCCcccEEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS--------HVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~--------~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 981 (1032)
.. .+++..|-. +.+ ...-+.++|..+|.|-++.-.. |||..+.+=|-..+.|..||++|.|..-....
T Consensus 459 k~--~e~EA~IIa-~AG-~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 459 KQ--NAREAEIIA-KAG-QKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred cc--hhhHHHHHH-hCC-CCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 64 344443332 223 3444566779999998876543 99999999999999999999999998865444
No 135
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=9.9e-07 Score=97.41 Aligned_cols=106 Identities=19% Similarity=0.316 Sum_probs=95.0
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
..+||++..+-++.|...|..+|+....++|.|.+.+|..+++.|+.+ +.+||+ ++...+.|++++..+-||+||+|-
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlI-ttdl~argidv~~~slvinydlP~ 342 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLI-TTDLLARGIDVQQVSLVVNYDLPA 342 (397)
T ss_pred cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEe-eccccccccchhhcceeeeecccc
Confidence 789999999999999999999999999999999999999999999976 666665 669999999999999999999999
Q ss_pred CCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 959 NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 959 Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
|...+..++||..|+|-+ -.+..++++.
T Consensus 343 ~~~~yihR~gr~gr~grk--g~~in~v~~~ 370 (397)
T KOG0327|consen 343 RKENYIHRIGRAGRFGRK--GVAINFVTEE 370 (397)
T ss_pred chhhhhhhcccccccCCC--ceeeeeehHh
Confidence 999999999999999965 3344566555
No 136
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.36 E-value=0.00052 Score=79.15 Aligned_cols=137 Identities=19% Similarity=0.237 Sum_probs=109.0
Q ss_pred chhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCCC
Q 001680 831 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 910 (1032)
Q Consensus 831 SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs 910 (1032)
..-++-|+..|+...+.+. ++||-+--..|++-|.++|.+.|+++..+|..
T Consensus 429 ~~QvdDL~~EI~~r~~~~e-----------------------------RvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSd 479 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNE-----------------------------RVLVTTLTKKMAEDLTEYLKELGIKVRYLHSD 479 (663)
T ss_pred CCcHHHHHHHHHHHHhcCC-----------------------------eEEEEeehHHHHHHHHHHHHhcCceEEeeecc
Confidence 3456677777776665554 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCC-----CCCChHHHHhHhhhccCCcccEEEEEEE
Q 001680 911 MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLW-----WNPTTEDQAVDRAHRIGQTRPVTVTRLT 985 (1032)
Q Consensus 911 ~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~-----WNp~~e~QAigRi~RiGQ~k~V~VyrLi 985 (1032)
...-+|.++|.+.+.+ ...||+ .....-+||+|..++-|.++|-. -+-....|-|||+-|--.- .|..|-=.
T Consensus 480 idTlER~eIirdLR~G-~~DvLV-GINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~ 556 (663)
T COG0556 480 IDTLERVEIIRDLRLG-EFDVLV-GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADK 556 (663)
T ss_pred chHHHHHHHHHHHhcC-CccEEE-eehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchh
Confidence 9999999999999965 666665 46888999999999999999976 5778899999999994322 24444434
Q ss_pred eCCCHHHHHHHHHH
Q 001680 986 IRDTVEDRILKLQD 999 (1032)
Q Consensus 986 ~~~TiEe~I~~lq~ 999 (1032)
+.++++..|-+-.+
T Consensus 557 iT~sM~~Ai~ET~R 570 (663)
T COG0556 557 ITDSMQKAIDETER 570 (663)
T ss_pred hhHHHHHHHHHHHH
Confidence 45566666655444
No 137
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.35 E-value=1.3e-06 Score=95.04 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=77.9
Q ss_pred HHHHhhccCccccEEEeecCCCccccccccC----C---E-EEEecCCCCCChHHHHhHhhhccCCcccEEEEEEEeCCC
Q 001680 918 RAVKDFNTDREITVMLMSLKAGNLGLNMVAA----S---H-VILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDT 989 (1032)
Q Consensus 918 ~~i~~F~~~~~~~VLLlStkagg~GLNL~~A----~---~-VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~T 989 (1032)
...+.|+++ ...|+|+| +||++|+.||+- | + .|.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g-~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCC-CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 567799976 77889988 999999999962 2 2 578999999999999999999999998866656666668
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 001680 990 VEDRILKLQDDKRKMVASAFGED 1012 (1032)
Q Consensus 990 iEe~I~~lq~~K~~l~~~~~g~~ 1012 (1032)
.|.|......+|.+-..+...++
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCc
Confidence 89999999999988777666554
No 138
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.15 E-value=4.3e-05 Score=92.54 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=51.0
Q ss_pred eeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC---------CCCCChHHHHhHhhhccCCc
Q 001680 906 RLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL---------WWNPTTEDQAVDRAHRIGQT 976 (1032)
Q Consensus 906 ~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp---------~WNp~~e~QAigRi~RiGQ~ 976 (1032)
+-+|+.=+--++-+=.-|+.+ =++||+ +|...+-|+|+.+=+.|| -.. .-+|..+.|..||++|-|=.
T Consensus 635 VHH~GlLPivKE~VE~LFqrG-lVKVLF-ATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD 711 (1248)
T KOG0947|consen 635 VHHGGLLPIVKEVVELLFQRG-LVKVLF-ATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLD 711 (1248)
T ss_pred hhcccchHHHHHHHHHHHhcC-ceEEEe-ehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccC
Confidence 456666554454455567754 566655 669999999999765554 222 25799999999999999976
Q ss_pred ccEEEE
Q 001680 977 RPVTVT 982 (1032)
Q Consensus 977 k~V~Vy 982 (1032)
..=+|.
T Consensus 712 ~tGTVi 717 (1248)
T KOG0947|consen 712 ETGTVI 717 (1248)
T ss_pred cCceEE
Confidence 654443
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.14 E-value=6e-05 Score=92.38 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=60.5
Q ss_pred eEEEEecc---HHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCC---Ccccccccc-CCEE
Q 001680 879 KSIVFSQW---TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA---GNLGLNMVA-ASHV 951 (1032)
Q Consensus 879 KvIIFSqf---~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStka---gg~GLNL~~-A~~V 951 (1032)
=.|||.+- .+.++.|...|+.+|+.+..++. .+.+.++.|..+ ++.||+....- .-.||+|.. .-++
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~G-eidvLVGvAsyYG~lVRGlDLP~rirYa 410 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEG-EVDVLVGVASYYGVLVRGLDLPHRIRYA 410 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccC-ceeEEEEecccccceeecCCchhheeEE
Confidence 45999998 89999999999999999887765 236789999976 88888866443 447999997 7889
Q ss_pred EEecCC
Q 001680 952 ILLDLW 957 (1032)
Q Consensus 952 I~~Dp~ 957 (1032)
||+..|
T Consensus 411 IF~GvP 416 (1187)
T COG1110 411 VFYGVP 416 (1187)
T ss_pred EEecCC
Confidence 999998
No 140
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.09 E-value=0.00017 Score=89.74 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=55.6
Q ss_pred ceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEE----EecCC---C---CCChHHHHhHhhh
Q 001680 902 IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI----LLDLW---W---NPTTEDQAVDRAH 971 (1032)
Q Consensus 902 i~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI----~~Dp~---W---Np~~e~QAigRi~ 971 (1032)
+.++.-+.+|+..+|+..=+-|.++ .++|++ ||...+-|+||.+-..+| .|||. | .|-...|..||++
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g-~iqvlv-statlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADG-HIQVLV-STATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcC-ceeEEE-eehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 4567778899999999999999855 777766 779999999998655444 46665 4 3567789999999
Q ss_pred ccC
Q 001680 972 RIG 974 (1032)
Q Consensus 972 RiG 974 (1032)
|.+
T Consensus 686 rp~ 688 (1674)
T KOG0951|consen 686 RPQ 688 (1674)
T ss_pred CCc
Confidence 975
No 141
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.05 E-value=0.00019 Score=78.60 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=90.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW 958 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W 958 (1032)
..||||-...-.+.+...|+..||....++..+.+.+|..+-+.|-.+ ++.|++.+ -+.|.|++-.....||+-.++-
T Consensus 319 sgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiqvivat-vafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 319 SGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIVAT-VAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred cceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceEEEEEE-eeecccCCCCCeeEEEecccch
Confidence 568888888889999999999999999999999999998888888765 88887755 7899999999999999999998
Q ss_pred CCChHHH-------------------------------------------HhHhhhccCCcccEEEEEE
Q 001680 959 NPTTEDQ-------------------------------------------AVDRAHRIGQTRPVTVTRL 984 (1032)
Q Consensus 959 Np~~e~Q-------------------------------------------AigRi~RiGQ~k~V~VyrL 984 (1032)
+-..+-| --||++|-||+-++..|+=
T Consensus 397 sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 397 SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEec
Confidence 8888888 4688999999988777663
No 142
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.86 E-value=0.0034 Score=78.61 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=94.7
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+....+. -|||-+.....-+.|.+.|...||++-+|+.
T Consensus 610 ~~eK~~Aii~ei~~~~~~Gr-----------------------------PVLVGT~SVe~SE~lS~~L~~~gI~H~VLNA 660 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGR-----------------------------PVLVGTTSVEISELLSRMLKMRKIPHNVLNA 660 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCC-----------------------------CEEEEeCcHHHHHHHHHHHHHcCCcHHHhhc
Confidence 45799999999998887776 8999999999999999999999999988887
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccc--------cCCEEEEecCCCCCChHHHHhHhhhccCCcccEEE
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV--------AASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~--------~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~V~V 981 (1032)
..- ++-.++|.+-- ..-.+-++|.-+|.|-++. ..=|||.-+.+-+...+.|..||++|.|..-....
T Consensus 661 K~h-~~EAeIVA~AG---~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 661 KLH-QKEAEIVAEAG---QPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred cch-hhHHHHHHhcC---CCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 643 22234444332 2233455779999998866 35689999999999999999999999998765433
No 143
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.81 E-value=4.8e-05 Score=84.62 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=83.5
Q ss_pred ceEEEEeccHHHHHHHHHHhhhcC---ceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEe
Q 001680 878 IKSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILL 954 (1032)
Q Consensus 878 ~KvIIFSqf~~~ld~L~~~L~~~g---i~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~ 954 (1032)
+|+||||.-..-.|-|++++.+.| +..+.++|.-.+.+|.+-++.|... +++. |+.+++++.||+++..-.||++
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkf-lictdvaargldi~g~p~~inv 583 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKF-LICTDVAARGLDITGLPFMINV 583 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEE-EEEehhhhccccccCCceEEEE
Confidence 499999999999999999999885 5678899999999999999999965 5554 5566999999999999999999
Q ss_pred cCCCCCChHHHHhHhhhcc
Q 001680 955 DLWWNPTTEDQAVDRAHRI 973 (1032)
Q Consensus 955 Dp~WNp~~e~QAigRi~Ri 973 (1032)
.+|-....+..||||++|-
T Consensus 584 tlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 584 TLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred ecCcccchhhhhhhccchh
Confidence 9999999999999888773
No 144
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1e-05 Score=83.82 Aligned_cols=55 Identities=36% Similarity=0.875 Sum_probs=45.3
Q ss_pred ccccccccccCCCCCCccccccCcccchhhhhhhccCCCC--CCCCccccccccccccc
Q 001680 740 ETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDN--MCPAPRCKEQLGADVVF 796 (1032)
Q Consensus 740 e~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~--~cp~~~c~~~l~~~~v~ 796 (1032)
+.+...|.||+|..++||+|.|||.||-.|+.+|+....+ .|| .|+..+..+.|+
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cP--VCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECP--VCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCC--ccccccccceEE
Confidence 3567789999999999999999999999999999865544 555 677777776654
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.77 E-value=0.0029 Score=78.43 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=63.0
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+....+. -|||-+.....-+.|...|.+.|+++..++.
T Consensus 406 ~~~K~~AI~~ei~~~~~~gr-----------------------------PVLIgT~SIe~SE~ls~~L~~~gi~h~vLNA 456 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGR-----------------------------PILIGTTTIEKSELLSQLLKEYRLPHQLLNA 456 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCC-----------------------------CEEEeeCCHHHHHHHHHHHHHcCCccceeeC
Confidence 35699999998888777666 8999999999999999999999999999998
Q ss_pred CC-CHHHHHHHHHhhccCccccEEEeecCCCccccc
Q 001680 910 TM-SLPARDRAVKDFNTDREITVMLMSLKAGNLGLN 944 (1032)
Q Consensus 910 s~-s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLN 944 (1032)
.. ..++-.++|.+-- ...-+-++|..+|.|.+
T Consensus 457 k~~~~~~EA~IIA~AG---~~G~VTIATNMAGRGTD 489 (870)
T CHL00122 457 KPENVRRESEIVAQAG---RKGSITIATNMAGRGTD 489 (870)
T ss_pred CCccchhHHHHHHhcC---CCCcEEEeccccCCCcC
Confidence 63 2344455665532 33334557788888844
No 146
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.76 E-value=0.00012 Score=71.63 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=52.8
Q ss_pred CceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhccc
Q 001680 410 AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGE 489 (1032)
Q Consensus 410 ~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~ 489 (1032)
.++||+.|.-++. +|+.+.+. .+. +.++-..+.. ...+..-|-+++|.++.....
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~---~~~-~~~~t~~~~~--~~~g~~~i~vMc~at~~~~~~---------------- 88 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALK---GLP-VRFHTNARMR--THFGSSIIDVMCHATYGHFLL---------------- 88 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTT---TSS-EEEESTTSS------SSSSEEEEEHHHHHHHHH----------------
T ss_pred CeEEEecccHHHH---HHHHHHHh---cCC-cccCceeeec--cccCCCcccccccHHHHHHhc----------------
Confidence 4599999998763 45555554 232 2333332222 234556688899998765310
Q ss_pred ccCCcchhhhhhhhhccccccccccCCCCCCCCCCcccCCCCCccccccEEEEecCcccCCcccHHHHHH-Hhc-cc--C
Q 001680 490 TYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARAC-CSL-RA--K 565 (1032)
Q Consensus 490 ~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal-~~L-~a--~ 565 (1032)
.+....+|++||+||||.. ++.|-..+-. ..+ .. .
T Consensus 89 ----------------------------------------~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~ 127 (148)
T PF07652_consen 89 ----------------------------------------NPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEA 127 (148)
T ss_dssp ----------------------------------------TSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-
T ss_pred ----------------------------------------CcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCe
Confidence 0123457999999999984 3433332221 122 22 3
Q ss_pred cEEEEeccCC
Q 001680 566 RRWCLSGTPI 575 (1032)
Q Consensus 566 ~r~lLTGTPi 575 (1032)
..+++||||.
T Consensus 128 ~~i~mTATPP 137 (148)
T PF07652_consen 128 KVIFMTATPP 137 (148)
T ss_dssp EEEEEESS-T
T ss_pred eEEEEeCCCC
Confidence 6899999995
No 147
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.59 E-value=0.00053 Score=86.05 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=30.5
Q ss_pred EEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCC
Q 001680 539 RVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQ 576 (1032)
Q Consensus 539 rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~ 576 (1032)
.||+||+|++... .+...++..++....+.-|||--.
T Consensus 204 ivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCC
Confidence 5999999999652 346688899999999999999754
No 148
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.54 E-value=4.5e-05 Score=77.95 Aligned_cols=54 Identities=30% Similarity=0.741 Sum_probs=41.9
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccC-------------CCCCCCCcccccccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG-------------DDNMCPAPRCKEQLGADVV 795 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~-------------~~~~cp~~~c~~~l~~~~v 795 (1032)
....|+||.+...+++++.|||+||..|+..|+.. ......||.|+..+....+
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 45789999999999999999999999999988642 1122334479988876544
No 149
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.48 E-value=0.003 Score=75.29 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=47.2
Q ss_pred HHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC--------CCCCChHHHHhHhhhccCCcccEEEEEEEeC
Q 001680 916 RDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL--------WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIR 987 (1032)
Q Consensus 916 R~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp--------~WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~ 987 (1032)
++-+---|+.+ =++||+ .|...+-|||+.+=..|+---- |-.-..|.|--||++|-|-...=.|. +++.
T Consensus 461 KE~IEILFqEG-LvKvLF-ATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivI-lmiD 537 (1041)
T KOG0948|consen 461 KEVIEILFQEG-LVKVLF-ATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVI-LMID 537 (1041)
T ss_pred HHHHHHHHhcc-HHHHHH-hhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEE-EEec
Confidence 33333346643 555655 5699999999997666554322 34566889999999999976442222 4444
Q ss_pred CCHHHHH
Q 001680 988 DTVEDRI 994 (1032)
Q Consensus 988 ~TiEe~I 994 (1032)
..+|...
T Consensus 538 ekm~~~~ 544 (1041)
T KOG0948|consen 538 EKMEPQV 544 (1041)
T ss_pred CcCCHHH
Confidence 4444433
No 150
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.45 E-value=0.0017 Score=68.18 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=42.0
Q ss_pred EeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCcc
Q 001680 933 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTR 977 (1032)
Q Consensus 933 LlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k 977 (1032)
++++...|.|++....|.+|+||.|-.+..+..+.+|++|.|-+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 567899999999999999999999999999999999999999653
No 151
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.36 E-value=7.5e-05 Score=63.19 Aligned_cols=48 Identities=13% Similarity=0.271 Sum_probs=39.5
Q ss_pred ccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccc
Q 001680 744 AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 794 (1032)
Q Consensus 744 ~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~ 794 (1032)
..|++|.+.+.+|+++.|||+||..|+.+++.. ...|| .|+..+..+.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP--~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDP--VTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCC--CCcCCCChhh
Confidence 369999999999999999999999999999876 56777 4665554443
No 152
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.34 E-value=8e-05 Score=56.66 Aligned_cols=37 Identities=43% Similarity=1.053 Sum_probs=31.4
Q ss_pred ccccCCCCCCc-cccccCcccchhhhhhhccCCCCCCCC
Q 001680 746 CCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 746 C~ic~d~~~~~-vvt~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
|++|.+.+.++ +++.|||+||.+|+.+++.. ...||.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcC
Confidence 78999999999 78999999999999999887 677874
No 153
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.33 E-value=0.011 Score=72.50 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=56.4
Q ss_pred eCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC-CCCCChHHHHhHhhhccCCcc
Q 001680 907 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL-WWNPTTEDQAVDRAHRIGQTR 977 (1032)
Q Consensus 907 l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp-~WNp~~e~QAigRi~RiGQ~k 977 (1032)
-+.++....|..+---|+.+ ...|++ +|...+.|+|+.+-..|+.-|. --||-.+.|+.||++|-|=..
T Consensus 968 HHaglNr~yR~~VEvLFR~g-~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~ 1037 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQG-HLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDT 1037 (1330)
T ss_pred cccccchHHHHHHHHHhhcC-ceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccccc
Confidence 45678888998888889865 666655 6799999999998777777764 589999999999999988543
No 154
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.31 E-value=0.00064 Score=78.59 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=81.6
Q ss_pred CceEEEEeccHHHHHHHHHHhhhcCce-EEeeCCCCCHHHHHHHHHhhccC-ccccEEEeecCCCccccccccCCEEEEe
Q 001680 877 PIKSIVFSQWTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGNLGLNMVAASHVILL 954 (1032)
Q Consensus 877 ~~KvIIFSqf~~~ld~L~~~L~~~gi~-~~~l~Gs~s~~eR~~~i~~F~~~-~~~~VLLlStkagg~GLNL~~A~~VI~~ 954 (1032)
++=|+-||.. -+-.+...++++|.. .++|.|+.+++.|.+--..||+. +++.||+.| +|.|-||||- ..+|||+
T Consensus 358 GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF~ 433 (700)
T KOG0953|consen 358 GDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIFY 433 (700)
T ss_pred CCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEEe
Confidence 3467777753 344566777788776 89999999999999999999973 478888876 9999999994 6899999
Q ss_pred cCC-CC--------CChHHHHhHhhhccCCccc-EEEEEEEeC
Q 001680 955 DLW-WN--------PTTEDQAVDRAHRIGQTRP-VTVTRLTIR 987 (1032)
Q Consensus 955 Dp~-WN--------p~~e~QAigRi~RiGQ~k~-V~VyrLi~~ 987 (1032)
++- +| -....|--||++|.|.+-+ =.|+-|-.+
T Consensus 434 sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 434 SLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred ecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 886 22 3355699999999987755 344444443
No 155
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.28 E-value=0.00013 Score=56.40 Aligned_cols=33 Identities=33% Similarity=0.734 Sum_probs=28.2
Q ss_pred ccccCCCCCCccccccCcccchhhhhhhccCCC
Q 001680 746 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDD 778 (1032)
Q Consensus 746 C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~ 778 (1032)
|++|.+...+|+...|||.||..|+..+.....
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC
Confidence 899999999999999999999999999876543
No 156
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=9.6e-05 Score=73.41 Aligned_cols=44 Identities=39% Similarity=0.840 Sum_probs=34.4
Q ss_pred ccccccccCCCCCC--ccccccCcccchhhhhhhccCCCCCCCCccc
Q 001680 742 SSAICCVCSDPPED--SVVTMCGHVFCYQCASEYITGDDNMCPAPRC 786 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~--~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c 786 (1032)
...-|++|++.... ++.|.|||+||.+|+.+.+.. ...||.+.|
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~k 175 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRK 175 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCccc
Confidence 34679999998654 677999999999999998764 357875554
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.26 E-value=0.045 Score=67.50 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=67.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc--CCEEEEe--
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILL-- 954 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~--A~~VI~~-- 954 (1032)
+|-|||....+.+++++.....+..+..+++..+..+ ++.+ .+.+|++-+ .+..+|+++-. -+.|+.|
T Consensus 284 nIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~VviYT-~~itvG~Sf~~~HF~~~f~yvk 355 (824)
T PF02399_consen 284 NICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVVIYT-PVITVGLSFEEKHFDSMFAYVK 355 (824)
T ss_pred cEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEEEEe-ceEEEEeccchhhceEEEEEec
Confidence 9999999999999999999999999999988766542 3333 366787766 67788999865 3445555
Q ss_pred cCCCCCCh--HHHHhHhhhccCCcc
Q 001680 955 DLWWNPTT--EDQAVDRAHRIGQTR 977 (1032)
Q Consensus 955 Dp~WNp~~--e~QAigRi~RiGQ~k 977 (1032)
.-.--|.. ..|.+||+..+...+
T Consensus 356 ~~~~gpd~~s~~Q~lgRvR~l~~~e 380 (824)
T PF02399_consen 356 PMSYGPDMVSVYQMLGRVRSLLDNE 380 (824)
T ss_pred CCCCCCcHHHHHHHHHHHHhhccCe
Confidence 22233554 579999999987553
No 158
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.24 E-value=0.0011 Score=85.30 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=44.9
Q ss_pred HHHHHHHhh-ccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCc-cc-EEEEEEE
Q 001680 915 ARDRAVKDF-NTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT-RP-VTVTRLT 985 (1032)
Q Consensus 915 eR~~~i~~F-~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~-k~-V~VyrLi 985 (1032)
.+.....+| ..+..+++||+. +-.=+|-+-+..+++++ |-+--.-...||+.|+.|+=-. |+ -.|..|+
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 344555565 555567777766 55557888777776654 5556677788999999997443 33 4444443
No 159
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.024 Score=71.18 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=75.0
Q ss_pred eEEEEeccHHHHHHHHHHhhh----cCceEEeeCCCCCHHHHHHHHHhhccCccc-cEEEeecCCCccccccccCCEEE-
Q 001680 879 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREI-TVMLMSLKAGNLGLNMVAASHVI- 952 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~----~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~-~VLLlStkagg~GLNL~~A~~VI- 952 (1032)
-+|||=.-...++...+.|.+ ..+.++-++|.++.++..+ -|+..+.- +-+|++|..+-++|......+||
T Consensus 261 dILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 261 SILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 567777666666666666665 3477888999999888777 46654433 54777999999999999988887
Q ss_pred -------EecCC----------CCCChHHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001680 953 -------LLDLW----------WNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 991 (1032)
Q Consensus 953 -------~~Dp~----------WNp~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiE 991 (1032)
.||+- -+-+.-.||-||++| +.+=..|||+.++..+
T Consensus 338 sG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 338 SGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred CCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 33332 233345576666666 5566889999886555
No 160
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00015 Score=83.10 Aligned_cols=51 Identities=31% Similarity=0.800 Sum_probs=43.7
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhccCC--CCCCCCcccccccccc
Q 001680 743 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD--DNMCPAPRCKEQLGAD 793 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~--~~~cp~~~c~~~l~~~ 793 (1032)
+..|+||+.++..|+.|.|||+||..|+-.|+... ...|-||.|+..+...
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 77899999999999999999999999999987644 5567778999877653
No 161
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.12 E-value=0.032 Score=69.47 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=65.5
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+.+..+.+. -|||-+.....-+.|...|.+.|+++.+++.
T Consensus 421 ~~~K~~Ai~~ei~~~~~~Gr-----------------------------PVLIgT~SVe~SE~ls~~L~~~gi~h~vLNA 471 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGR-----------------------------PVLVGTTSVEKSELLSALLQEQGIPHNLLNA 471 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------------------CEEEeeCCHHHHHHHHHHHHHcCCchheeeC
Confidence 36799999998888777666 8999999999999999999999999999988
Q ss_pred C-CCHHHHHHHHHhhccCccccEEEeecCCCccccccc
Q 001680 910 T-MSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMV 946 (1032)
Q Consensus 910 s-~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~ 946 (1032)
. ...++-.++|.+-- ...-+-++|..+|.|-+..
T Consensus 472 k~~~~~~EA~IIa~AG---~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 472 KPENVEREAEIVAQAG---RKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CCcchHhHHHHHHhcC---CCCcEEEeccCCCCCcCEe
Confidence 6 33344455666532 3333455778999996644
No 162
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00013 Score=87.67 Aligned_cols=50 Identities=36% Similarity=0.849 Sum_probs=42.7
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccc
Q 001680 743 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 794 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~ 794 (1032)
...|+.|.+.+-+.+++.|+|+||.+|+...+......|| .|...++.+.
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP--~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCP--KCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCC--CCCCCCCccc
Confidence 3469999999999999999999999999999988889999 5665555543
No 163
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00025 Score=75.81 Aligned_cols=52 Identities=29% Similarity=0.854 Sum_probs=43.2
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVF 796 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~ 796 (1032)
....|.+|++...+|--|+|||+||-.||.+|...... || .||.......++
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CP--lCR~~~~pskvi 289 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CP--LCREKFQPSKVI 289 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CC--cccccCCCccee
Confidence 45789999999999999999999999999999765443 76 788877766543
No 164
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.99 E-value=0.072 Score=63.83 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=74.4
Q ss_pred eEEEEeccHHHHHHHHHHhhhc------Cc--eEEeeCCCCCHHHHHHHHHhhccCc-cccEEEeecCCCccccccccCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH------CI--QYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAAS 949 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~------gi--~~~~l~Gs~s~~eR~~~i~~F~~~~-~~~VLLlStkagg~GLNL~~A~ 949 (1032)
-+|||=.-.+-++.+.+.|.+. +. -+.-++|+++.++..++ |...| +.+-+++||..+.+.|......
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 4566655555555444444433 11 24568999998776554 65543 7788888999999999998888
Q ss_pred EEEE----ecCCCCC-----------ChHHHHhHhhhccCCcccEEEEEEEeCCCHH
Q 001680 950 HVIL----LDLWWNP-----------TTEDQAVDRAHRIGQTRPVTVTRLTIRDTVE 991 (1032)
Q Consensus 950 ~VI~----~Dp~WNp-----------~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiE 991 (1032)
+||= ---.||| ....||.-|++|-|.+.+...|||+++.-.+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 7751 1112344 3456788888888888999999999988664
No 165
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.94 E-value=0.0057 Score=78.69 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=71.1
Q ss_pred eEEEEeccHHHHHHHHHHhhh----cCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCC--EEE
Q 001680 879 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS--HVI 952 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~----~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~--~VI 952 (1032)
++|||.....+++.+...|.. .++... ..+.. ..|.+++++|+.+ +..||| .+.+..+|+++..-. .||
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~-~~~iLl-gt~sf~EGVD~~g~~l~~vi 750 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNG-EKAILL-GTSSFWEGVDFPGNGLVCLV 750 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhC-CCeEEE-EcceeecccccCCCceEEEE
Confidence 899999999999999999875 344432 22222 5799999999874 444555 569999999999844 567
Q ss_pred EecCCCC-CC-----------------------------hHHHHhHhhhccCCcccEE
Q 001680 953 LLDLWWN-PT-----------------------------TEDQAVDRAHRIGQTRPVT 980 (1032)
Q Consensus 953 ~~Dp~WN-p~-----------------------------~e~QAigRi~RiGQ~k~V~ 980 (1032)
+.-+|+- |. ...|++||+.|-.+.+.|.
T Consensus 751 I~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v 808 (850)
T TIGR01407 751 IPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSI 808 (850)
T ss_pred EeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEE
Confidence 7776652 32 2349999999998887653
No 166
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0063 Score=76.99 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=51.3
Q ss_pred eeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEE----Eec----CCCCCChHHHHhHhhhccCCcc
Q 001680 906 RLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI----LLD----LWWNPTTEDQAVDRAHRIGQTR 977 (1032)
Q Consensus 906 ~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI----~~D----p~WNp~~e~QAigRi~RiGQ~k 977 (1032)
.-++++=+.-|..+-.-|+.+ -++|++ .|...+.|+|+..=+.|+ -+| -|-+|..+.|--||++|-|+..
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~G-LvkvvF-aTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQEG-LVKVVF-ATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhccccchHHHHHHHHHHhcc-ceeEEe-ehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 345677777888888888865 566655 458888888887633332 222 2356788889999999998887
Q ss_pred cEEEE
Q 001680 978 PVTVT 982 (1032)
Q Consensus 978 ~V~Vy 982 (1032)
.-+|.
T Consensus 527 ~G~vI 531 (1041)
T COG4581 527 LGTVI 531 (1041)
T ss_pred cceEE
Confidence 64443
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.68 E-value=0.01 Score=66.53 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=31.3
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
.+.||.|++-..-+.+....+ .-+|+--.+|.|||+..|..++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHHH
Confidence 345999999666665544432 23688889999999988876643
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.68 E-value=0.01 Score=66.53 Aligned_cols=44 Identities=25% Similarity=0.224 Sum_probs=31.3
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
.+.||.|++-..-+.+....+ .-+|+--.+|.|||+..|..++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHHH
Confidence 345999999666665544432 23688889999999988876643
No 169
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.68 E-value=0.00068 Score=77.69 Aligned_cols=48 Identities=29% Similarity=0.715 Sum_probs=39.7
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 792 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~ 792 (1032)
....|++|.+....|+++.|||.||..|+..++... ..|| .|+..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP--~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCP--LCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCC--CCCCcccc
Confidence 456899999999999999999999999999988653 4677 67765544
No 170
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.68 E-value=0.00079 Score=51.68 Aligned_cols=37 Identities=38% Similarity=1.016 Sum_probs=32.5
Q ss_pred ccccCCCCCCcc-ccccCcccchhhhhhhcc-CCCCCCC
Q 001680 746 CCVCSDPPEDSV-VTMCGHVFCYQCASEYIT-GDDNMCP 782 (1032)
Q Consensus 746 C~ic~d~~~~~v-vt~CgH~fC~~Ci~~~~~-~~~~~cp 782 (1032)
|++|.+....++ +..|||.||..|+.+++. .....||
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP 39 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCP 39 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCC
Confidence 789999999998 999999999999999987 5555676
No 171
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.65 E-value=0.19 Score=63.41 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=76.7
Q ss_pred ceEEEEeccHHHHHHHHHHhhhc-------CceEEeeCCCCCHHHHHHHHHhhccC-ccccEEEeecCCCccccccccCC
Q 001680 878 IKSIVFSQWTRMLDLVENSLNQH-------CIQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGNLGLNMVAAS 949 (1032)
Q Consensus 878 ~KvIIFSqf~~~ld~L~~~L~~~-------gi~~~~l~Gs~s~~eR~~~i~~F~~~-~~~~VLLlStkagg~GLNL~~A~ 949 (1032)
.-+|||-.-..-+..+...|... .+-...++++++..+.+.+ |+.. ++++-+|++|..+.+.|..-+.-
T Consensus 414 GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdDVv 490 (924)
T KOG0920|consen 414 GAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDDVV 490 (924)
T ss_pred ceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccCeE
Confidence 38999999888888888888643 2556778999988776665 5543 35677788999999999999888
Q ss_pred EEE--------EecCCC----------CCChHHHHhHhhhccCCcccEEEEEEEeCC
Q 001680 950 HVI--------LLDLWW----------NPTTEDQAVDRAHRIGQTRPVTVTRLTIRD 988 (1032)
Q Consensus 950 ~VI--------~~Dp~W----------Np~~e~QAigRi~RiGQ~k~V~VyrLi~~~ 988 (1032)
+|| .|||.- ..+.-.||.||++|. ++=..|+|+++.
T Consensus 491 yVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 491 YVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRS 544 (924)
T ss_pred EEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechh
Confidence 777 455543 345566888888774 555777777654
No 172
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.58 E-value=0.0013 Score=70.43 Aligned_cols=47 Identities=28% Similarity=0.797 Sum_probs=36.5
Q ss_pred ccccccccCCCCCC--------ccccccCcccchhhhhhhccCCCCCCCCcccccccc
Q 001680 742 SSAICCVCSDPPED--------SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 791 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~--------~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~ 791 (1032)
...+|++|.+...+ ++++.|+|+||..|+..|+.. ...|| .||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCP--lCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCP--VCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCC--CCCCEee
Confidence 46789999997543 367899999999999999764 56787 5776543
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.55 E-value=0.038 Score=59.02 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCchHHHHHHHHHHHhhccCCCccc-ceeecCCCCchHHHHHHHHHhh
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLG-GILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~G-GILADemGLGKTiqaIali~~~ 345 (1032)
.|-+.|+.|+.-++... + .++.-..|.|||-+..+++...
T Consensus 1 ~ln~~Q~~Ai~~~~~~~-------~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 1 KLNESQREAIQSALSSN-------GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp ---HHHHHHHHHHCTSS-------E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC-------CCEEEECCCCCChHHHHHHHHHHh
Confidence 37799999998777432 3 5778888999997766666553
No 174
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.49 E-value=0.0012 Score=53.18 Aligned_cols=46 Identities=33% Similarity=0.925 Sum_probs=37.2
Q ss_pred cccccccCCCCCCccccccCcc-cchhhhhhhccCCCCCCCCcccccccc
Q 001680 743 SAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLG 791 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~vvt~CgH~-fC~~Ci~~~~~~~~~~cp~~~c~~~l~ 791 (1032)
+..|.+|.+.+.+.++.+|||. ||..|...++. ....|| .|+..+.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP--~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCP--ICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBT--TTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCC--cCChhhc
Confidence 3579999999999999999999 99999999887 556777 5776553
No 175
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.49 E-value=0.02 Score=70.07 Aligned_cols=79 Identities=8% Similarity=0.095 Sum_probs=50.9
Q ss_pred eEEEEeccHHHHHHHHHHhhhc-CceEEeeCCCCCHHHHHHHHHhhccC--ccccEEEeecCCCcccccc----------
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTD--REITVMLMSLKAGNLGLNM---------- 945 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~-gi~~~~l~Gs~s~~eR~~~i~~F~~~--~~~~VLLlStkagg~GLNL---------- 945 (1032)
-.+.|+.+. .+..+.+.|... .++ +.+.|..+ .|..++++|... ....-+|+.+.+..+|+++
T Consensus 473 ~lvLfTS~~-~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G 548 (636)
T TIGR03117 473 TLVLTTAFS-HISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKD 548 (636)
T ss_pred EEEEechHH-HHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCC
Confidence 445565554 555556666543 233 34556442 567899999974 1223345566999999999
Q ss_pred ccCCEEEEecCCCCCC
Q 001680 946 VAASHVILLDLWWNPT 961 (1032)
Q Consensus 946 ~~A~~VI~~Dp~WNp~ 961 (1032)
-..+.||+.-+|+-|.
T Consensus 549 ~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 549 NLLTDLIITCAPFGLN 564 (636)
T ss_pred CcccEEEEEeCCCCcC
Confidence 2388899999998764
No 176
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.35 E-value=0.001 Score=51.57 Aligned_cols=30 Identities=33% Similarity=0.862 Sum_probs=20.0
Q ss_pred ccccCCCCCC----ccccccCcccchhhhhhhccC
Q 001680 746 CCVCSDPPED----SVVTMCGHVFCYQCASEYITG 776 (1032)
Q Consensus 746 C~ic~d~~~~----~vvt~CgH~fC~~Ci~~~~~~ 776 (1032)
|++|.+ ... |++..|||+||.+|+..+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 788887 555 888899999999999998763
No 177
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=96.23 E-value=0.36 Score=60.14 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=49.2
Q ss_pred EEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCC-----CCChHHHHhHhhhccCC
Q 001680 904 YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWW-----NPTTEDQAVDRAHRIGQ 975 (1032)
Q Consensus 904 ~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~W-----Np~~e~QAigRi~RiGQ 975 (1032)
++..+.+.+.++|.-+=..|+++ .++|++.+ ...+-|+||.+ .+||+=-|.. .-..+.|.+||++|.|=
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g-~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREG-NIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ceecccccccchHHHHHHHHHhc-CeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 34566677778887777788865 66666654 55888999985 5566554443 34578899999999983
No 178
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.39 Score=59.89 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=84.3
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhcCceEEeeCC
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 909 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~G 909 (1032)
...|+.++++.+......+. .|||-+.....-+.+...|.+.||+..+++.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gq-----------------------------PvLvgT~sie~SE~ls~~L~~~~i~h~VLNA 461 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQ-----------------------------PVLVGTVSIEKSELLSKLLRKAGIPHNVLNA 461 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCC-----------------------------CEEEcCcceecchhHHHHHHhcCCCceeecc
Confidence 45799999999988887776 9999999999999999999999999988887
Q ss_pred CCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCC-----------EEEEecCCCCCChHHHHhHhhhccC
Q 001680 910 TMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAAS-----------HVILLDLWWNPTTEDQAVDRAHRIG 974 (1032)
Q Consensus 910 s~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~-----------~VI~~Dp~WNp~~e~QAigRi~RiG 974 (1032)
.-. .|+.-|-.+. + ...-+-++|.-+|.|-++.-.- +||=-+-.=+-....|--||++|.|
T Consensus 462 k~h--~~EA~Iia~A-G-~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 462 KNH--AREAEIIAQA-G-QPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ccH--HHHHHHHhhc-C-CCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 664 5555454444 2 2223344778889998877533 3555555555555669999999999
No 179
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.04 E-value=0.0025 Score=55.79 Aligned_cols=50 Identities=14% Similarity=0.319 Sum_probs=38.0
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccccc
Q 001680 743 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 794 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~ 794 (1032)
...|++|.+.+.+||++.|||+|++.|+..++......||. |+..+..+.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~--t~~~l~~~~ 53 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPF--TRQPLSESD 53 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TT--T-SB-SGGG
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCC--CCCcCCccc
Confidence 35799999999999999999999999999999987788884 455555443
No 180
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.04 E-value=0.0038 Score=46.46 Aligned_cols=37 Identities=38% Similarity=1.034 Sum_probs=31.8
Q ss_pred ccccCCCCCCccccccCcccchhhhhhhccCCCCCCC
Q 001680 746 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCP 782 (1032)
Q Consensus 746 C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp 782 (1032)
|++|.+....+++..|||.||..|+..++......||
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP 37 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCP 37 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCC
Confidence 6789988888999999999999999998875555676
No 181
>PHA02926 zinc finger-like protein; Provisional
Probab=95.88 E-value=0.0044 Score=64.16 Aligned_cols=49 Identities=20% Similarity=0.661 Sum_probs=36.5
Q ss_pred cccccccccCCCCC---------CccccccCcccchhhhhhhccCC-----CCCCCCcccccccc
Q 001680 741 TSSAICCVCSDPPE---------DSVVTMCGHVFCYQCASEYITGD-----DNMCPAPRCKEQLG 791 (1032)
Q Consensus 741 ~~~~~C~ic~d~~~---------~~vvt~CgH~fC~~Ci~~~~~~~-----~~~cp~~~c~~~l~ 791 (1032)
+.+.+|++|.+..- ..++..|+|.||..|+..|.... ...|| .||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCP--iCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCP--ICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCC--CCcceee
Confidence 35689999998631 26889999999999999997642 23577 6776543
No 182
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.84 E-value=0.0047 Score=47.68 Aligned_cols=38 Identities=37% Similarity=0.967 Sum_probs=30.4
Q ss_pred cccccCCCCCCcccc-ccCcccchhhhhhhccCCCCCCC
Q 001680 745 ICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCP 782 (1032)
Q Consensus 745 ~C~ic~d~~~~~vvt-~CgH~fC~~Ci~~~~~~~~~~cp 782 (1032)
.|++|.+....++.. .|||.||..|+..++......||
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp 39 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCP 39 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCC
Confidence 488999888555444 59999999999999877566787
No 183
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.74 E-value=0.032 Score=68.10 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=29.9
Q ss_pred EEEEecCcccCCcccHHHHHHHhcccCcEEEEeccC
Q 001680 539 RVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTP 574 (1032)
Q Consensus 539 rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTP 574 (1032)
.|||||-|++... .+.+.++..+++...+=.+||-
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 4999999999876 7888999999888877788883
No 184
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=95.74 E-value=0.0027 Score=49.65 Aligned_cols=38 Identities=37% Similarity=0.820 Sum_probs=30.3
Q ss_pred cccccCCCC---CCccccccCcccchhhhhhhccCCCCCCCC
Q 001680 745 ICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 745 ~C~ic~d~~---~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
.|+||.+.. +..+...|||+||..|+.+|+... ..||.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~ 42 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPV 42 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TT
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCc
Confidence 689999875 356778899999999999998764 57773
No 185
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.60 E-value=0.0084 Score=46.88 Aligned_cols=38 Identities=32% Similarity=0.842 Sum_probs=30.1
Q ss_pred cccccCCCC---CCccccccCcccchhhhhhhccCCCCCCCC
Q 001680 745 ICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 745 ~C~ic~d~~---~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
.|.+|.... ..++++.|||+||..|+.... .....||.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~ 41 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPI 41 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcC
Confidence 377887766 358999999999999999877 55567774
No 186
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.54 E-value=0.69 Score=55.83 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=52.1
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCC-----HHHHHHHHHhhccC--ccccEEEeec--CCCcccccccc--
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS-----LPARDRAVKDFNTD--REITVMLMSL--KAGNLGLNMVA-- 947 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s-----~~eR~~~i~~F~~~--~~~~VLLlSt--kagg~GLNL~~-- 947 (1032)
-||+|-..-..+..+....++.|+- .+|.|..+ ..--..+++.|... ...--||++. .-.++|||+.+
T Consensus 631 GvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~L 709 (821)
T KOG1133|consen 631 GVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDL 709 (821)
T ss_pred cEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccccc
Confidence 7899999999999999999988762 22322211 01134567777642 1222455452 33569999998
Q ss_pred CCEEEEecCCCC
Q 001680 948 ASHVILLDLWWN 959 (1032)
Q Consensus 948 A~~VI~~Dp~WN 959 (1032)
+-.|+++.+|+-
T Consensus 710 gRaVvvVGlPyP 721 (821)
T KOG1133|consen 710 GRAVVVVGLPYP 721 (821)
T ss_pred ccEEEEeecCCC
Confidence 788898888874
No 187
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.008 Score=64.79 Aligned_cols=58 Identities=22% Similarity=0.549 Sum_probs=50.5
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcccccccccccccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTL 801 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l 801 (1032)
...+|.||...+.-|+...|+|.||+-||......+-..|+ .||.++..+..+....+
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~Ca--vCR~pids~i~~~psl~ 63 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCA--VCRFPIDSTIDFEPSLK 63 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCc--eecCCCCcchhcchhhh
Confidence 35789999999999999999999999999998888877888 69999998887766544
No 188
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.52 E-value=0.0095 Score=65.70 Aligned_cols=50 Identities=24% Similarity=0.640 Sum_probs=36.8
Q ss_pred cccccccCCC--CCC---ccccccCcccchhhhhhhccCCCCCCCCccccccccccc
Q 001680 743 SAICCVCSDP--PED---SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 794 (1032)
Q Consensus 743 ~~~C~ic~d~--~~~---~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~ 794 (1032)
+..|++|... ... ..+..|||.||..|+..++......|| .|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP--~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCP--ECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCC--CCCCccchhh
Confidence 3579999873 222 245589999999999998877666777 7887776554
No 189
>PRK10536 hypothetical protein; Provisional
Probab=95.46 E-value=0.025 Score=61.41 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=31.8
Q ss_pred ccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCCh
Q 001680 537 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSI 579 (1032)
Q Consensus 537 w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l 579 (1032)
-..|||||||++.- .+....+..+....+++++|-|-|..+
T Consensus 177 ~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 177 NAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 35799999999964 444556677788999999999876654
No 190
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.45 E-value=0.0057 Score=64.99 Aligned_cols=41 Identities=29% Similarity=0.658 Sum_probs=35.6
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCC
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
+...|.||.+-...|++|.|||.||.-||..++.. ++.||+
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~ 64 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPV 64 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCcc
Confidence 34579999999999999999999999999999864 567774
No 191
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.42 E-value=0.068 Score=63.54 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcCc
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 378 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1032)
.|-..|..||...+++.- .||--..|.|||++.-+++.....
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyhl~~------------------------------- 451 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYHLAR------------------------------- 451 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHHHHH-------------------------------
Confidence 478899999999997654 488889999999988666644321
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChh-hHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC
Q 001680 379 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK 450 (1032)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~ 450 (1032)
...+++||++|.. .++|-..-|++- .++|+......|..
T Consensus 452 ----------------------------~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE~ 491 (935)
T KOG1802|consen 452 ----------------------------QHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRED 491 (935)
T ss_pred ----------------------------hcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhhh
Confidence 2346699999987 479999999874 58998887766543
No 192
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.0074 Score=64.09 Aligned_cols=46 Identities=33% Similarity=0.795 Sum_probs=36.7
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCC-CCCCCCcccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD-DNMCPAPRCKEQ 789 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~-~~~cp~~~c~~~ 789 (1032)
.+-.|.+|.+.++.|.-+.|||+||..|+-..++.. -..|| .||..
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~Cp--lCRak 260 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCP--LCRAK 260 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCc--hhhhh
Confidence 356799999999999999999999999998844443 34588 45543
No 193
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=95.35 E-value=0.0034 Score=68.09 Aligned_cols=41 Identities=24% Similarity=0.671 Sum_probs=35.8
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCC
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
....|.||.+-...|++++|+|.||--||..++.. .+.||.
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~ 62 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPT 62 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCc
Confidence 34579999999999999999999999999999874 467884
No 194
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.24 E-value=0.1 Score=66.63 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=67.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc--CCEEEEecC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~--A~~VI~~Dp 956 (1032)
+++|+-...+++..+...|....++. ...|... .|.+++++|+.+ +-.||| .+.+..+|+++.. +..||+.-+
T Consensus 649 ~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~-~~~vLl-G~~sFwEGVD~p~~~~~~viI~kL 723 (820)
T PRK07246 649 PILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRG-EQQILL-GLGSFWEGVDFVQADRMIEVITRL 723 (820)
T ss_pred CEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcC-CCeEEE-ecchhhCCCCCCCCCeEEEEEecC
Confidence 88888888889998888887665544 4445332 366799999874 334555 4588999999963 555677775
Q ss_pred C-CCCCh-----------------------------HHHHhHhhhccCCcccEE
Q 001680 957 W-WNPTT-----------------------------EDQAVDRAHRIGQTRPVT 980 (1032)
Q Consensus 957 ~-WNp~~-----------------------------e~QAigRi~RiGQ~k~V~ 980 (1032)
| .+|.. ..|++||+.|--..+.|.
T Consensus 724 PF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv 777 (820)
T PRK07246 724 PFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAV 777 (820)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEE
Confidence 5 33422 229999999977666653
No 195
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.20 E-value=0.0078 Score=49.79 Aligned_cols=46 Identities=33% Similarity=0.659 Sum_probs=32.1
Q ss_pred ccccccccCCCCCCcccc-ccCcccchhhhhhhcc-CCCCCCCCcccc
Q 001680 742 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYIT-GDDNMCPAPRCK 787 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt-~CgH~fC~~Ci~~~~~-~~~~~cp~~~c~ 787 (1032)
....|++...++.+||.. .|+|+|....|.+|+. .....||+..|.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 456899999999999886 9999999999999993 445689988873
No 196
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.15 E-value=0.043 Score=57.89 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=21.5
Q ss_pred ccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChH
Q 001680 535 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSID 580 (1032)
Q Consensus 535 ~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~ 580 (1032)
+....|||||||++... ..-..+.++....+++++|=|.|....
T Consensus 118 ~~~~~iIvDEaQN~t~~--~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTPE--ELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--HH--HHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCHH--HHHHHHcccCCCcEEEEecCceeecCC
Confidence 33568999999988532 333445566777899999999876544
No 197
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.12 E-value=0.091 Score=53.83 Aligned_cols=98 Identities=22% Similarity=0.296 Sum_probs=63.9
Q ss_pred ceEEEEeccHHHHHHHHHHhhhcC----ceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecC--CCcccccccc--CC
Q 001680 878 IKSIVFSQWTRMLDLVENSLNQHC----IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK--AGNLGLNMVA--AS 949 (1032)
Q Consensus 878 ~KvIIFSqf~~~ld~L~~~L~~~g----i~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStk--agg~GLNL~~--A~ 949 (1032)
.++|||...-..++.+...+...+ +.+..- + ..++.+++++|..+. ..+|+++. ...+|+|+.. +.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~--~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGE--GAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSS--SEEEEEETTSCCGSSS--ECESEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhcc--CeEEEEEecccEEEeecCCCchhh
Confidence 399999999999999999998764 433222 2 458899999999853 33455556 7899999996 77
Q ss_pred EEEEecCCCC-CCh-----------------------------HHHHhHhhhccCCcccEEE
Q 001680 950 HVILLDLWWN-PTT-----------------------------EDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 950 ~VI~~Dp~WN-p~~-----------------------------e~QAigRi~RiGQ~k~V~V 981 (1032)
.||+.-+|+- |.. ..||+||+.|-.+.+-+.|
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 8899988863 321 1289999999777655443
No 198
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.93 E-value=0.018 Score=74.62 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=55.3
Q ss_pred EEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCC
Q 001680 880 SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWN 959 (1032)
Q Consensus 880 vIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WN 959 (1032)
+++|+-...+...+...+. ..+.+...+...++.+|... +....+.+|.+|..+...+.++++|+
T Consensus 445 ~~~~~v~itty~~l~~~~~--------~~~~l~~~~~~~~v~DEa~~-------ikn~~s~~~~~l~~~~~~~~~~LtgT 509 (866)
T COG0553 445 VIIFDVVITTYELLRRFLV--------DHGGLKKIEWDRVVLDEAHR-------IKNDQSSEGKALQFLKALNRLDLTGT 509 (866)
T ss_pred cceeeEEechHHHHHHhhh--------hHHHHhhceeeeeehhhHHH-------HhhhhhHHHHHHHHHhhcceeeCCCC
Confidence 5788888888888887541 11111222222223333211 34567788999999999999999999
Q ss_pred CChHHHHhHhhhccCCc
Q 001680 960 PTTEDQAVDRAHRIGQT 976 (1032)
Q Consensus 960 p~~e~QAigRi~RiGQ~ 976 (1032)
| .+|++++.++++|.
T Consensus 510 P--len~l~eL~sl~~~ 524 (866)
T COG0553 510 P--LENRLGELWSLLQE 524 (866)
T ss_pred h--HhhhHHHHHHHHHH
Confidence 9 79999999999995
No 199
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.93 E-value=0.018 Score=48.05 Aligned_cols=44 Identities=30% Similarity=0.733 Sum_probs=23.4
Q ss_pred cccccccCCCCCCcc-ccccCcccchhhhhhhccCCCCCCCCcccccccc
Q 001680 743 SAICCVCSDPPEDSV-VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 791 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~v-vt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~ 791 (1032)
...|+.|.+.+..|| .+.|.|+||..|+...+.. .|| .|..+..
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CP--vC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECP--VCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-S--SS--B-S
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCC--CcCChHH
Confidence 457999999999997 6999999999999987664 376 4555443
No 200
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.47 E-value=0.27 Score=64.03 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=70.2
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCc--eEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc--CCEEEEe
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCI--QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILL 954 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi--~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~--A~~VI~~ 954 (1032)
++|||.....++..+...|..... .+..+.-+++...|.+++++|+.. +-.||| .+.+..+|+++.. ...||+.
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLl-G~~sFwEGVD~pg~~l~~viI~ 831 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILL-GTSSFWEGIDIPGDELSCLVIV 831 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEE-ecCcccCccccCCCceEEEEEe
Confidence 778888888888888888875422 122232233335689999999964 234555 4688999999998 4788898
Q ss_pred cCCC-CCCh-----------------------------HHHHhHhhhccCCcccEE
Q 001680 955 DLWW-NPTT-----------------------------EDQAVDRAHRIGQTRPVT 980 (1032)
Q Consensus 955 Dp~W-Np~~-----------------------------e~QAigRi~RiGQ~k~V~ 980 (1032)
-+|+ +|.. ..|++||+.|-.+.+.|.
T Consensus 832 kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 832 RLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEE
Confidence 8787 4541 138999999988877653
No 201
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.39 E-value=0.19 Score=62.44 Aligned_cols=58 Identities=28% Similarity=0.267 Sum_probs=42.4
Q ss_pred CceEEEcCh-hhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCCC------ccccCCCcEEEEcchhhhc
Q 001680 410 AGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD------PVELAKYDVVLTTYSIVTN 470 (1032)
Q Consensus 410 ~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~------~~~l~~~dVVItTY~~l~~ 470 (1032)
+.+||++|. ++..|+..-|.+.++ ...+.+||+...... ....++..|||=|.+.+..
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFa 253 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFA 253 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEe
Confidence 458999996 588999999999986 346888998654331 1223567899999877653
No 202
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.71 E-value=0.34 Score=62.62 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=29.8
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHH
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 343 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~ 343 (1032)
..+.||+|.+.+..+.+..... .-+++--.+|.|||+..|.-++
T Consensus 243 ~~~~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~~ 286 (850)
T TIGR01407 243 GLEYRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPAL 286 (850)
T ss_pred CCccCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHHH
Confidence 3468999998777665544322 2245666999999997765543
No 203
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.025 Score=45.04 Aligned_cols=48 Identities=33% Similarity=0.833 Sum_probs=40.7
Q ss_pred ccccccccCCCCCCccccccCcc-cchhhhhhhccCCCCCCCCcccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLG 791 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~-fC~~Ci~~~~~~~~~~cp~~~c~~~l~ 791 (1032)
.+.+|-||.+.+.+.|+-.|||. .|+.|--+..++....|| .||..+.
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CP--iCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCP--ICRAPIK 54 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCc--chhhHHH
Confidence 45799999999999999999996 899998888887778888 5776553
No 204
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=93.28 E-value=0.41 Score=47.60 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhcCc-------eEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc--CCEEEEecCCC
Q 001680 889 MLDLVENSLNQHCI-------QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLDLWW 958 (1032)
Q Consensus 889 ~ld~L~~~L~~~gi-------~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~--A~~VI~~Dp~W 958 (1032)
.++.+...+...++ ..+.+-| ....+..+++++|....+..| |+++....+|+|+.. +..||+.-.|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~i-L~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAI-LLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEE-EEEccceecceecCCCCeeEEEEEecCC
Confidence 34455555555543 2333434 334467899999997533234 556566999999997 56788888665
No 205
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.059 Score=57.56 Aligned_cols=48 Identities=38% Similarity=0.863 Sum_probs=36.1
Q ss_pred cccccccccCCCCCCcccc-ccCcccchhhhhhhc-cCCCCCCCCccccccc
Q 001680 741 TSSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYI-TGDDNMCPAPRCKEQL 790 (1032)
Q Consensus 741 ~~~~~C~ic~d~~~~~vvt-~CgH~fC~~Ci~~~~-~~~~~~cp~~~c~~~l 790 (1032)
++.-+|++|.+.|..|.+. .|+|++|+-|+..-. ...-..|| .|.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp--~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCP--LCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccC--ccCCCC
Confidence 4677999999999888655 599999999998654 34445777 565543
No 206
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.00 E-value=0.59 Score=60.91 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=27.1
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHH
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 342 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali 342 (1032)
..-||-|.+-...+.+......+ .++=-.+|.|||+-.+.-+
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~---~~iEA~TGtGKTlaYLlpa 297 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEH---ALIEAGTGTGKSLAYLLPA 297 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCC---EEEECCCCCchhHHHHHHH
Confidence 47899999866655544332211 3445589999999765433
No 207
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.91 E-value=0.65 Score=57.51 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=47.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhcC-------ceEEeeCCCCCHHHHHHHHHhhcc---Cc---cccEEEeecCCCcccccc
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHC-------IQYRRLDGTMSLPARDRAVKDFNT---DR---EITVMLMSLKAGNLGLNM 945 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~g-------i~~~~l~Gs~s~~eR~~~i~~F~~---~~---~~~VLLlStkagg~GLNL 945 (1032)
-+|||-..-.+++-+.......+ +.-+.+ .--+..+=.+++.+|.+ ++ ....+.+.-...++||++
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 57899888788888855554432 221111 11133344556666654 11 122233444567899999
Q ss_pred cc--CCEEEEecCCCCCC
Q 001680 946 VA--ASHVILLDLWWNPT 961 (1032)
Q Consensus 946 ~~--A~~VI~~Dp~WNp~ 961 (1032)
.+ +..||...+|+=|.
T Consensus 642 sD~~~RaVI~tGlPyP~~ 659 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPV 659 (945)
T ss_pred cccCCceeEEecCCCCCC
Confidence 87 66789888887443
No 208
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.75 E-value=1.5 Score=54.71 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=31.9
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
...|-+.|+.+|...+.... -.|+--..|.|||-++.+++..
T Consensus 155 ~~~ln~~Q~~Av~~~l~~~~------~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 155 DPNLNESQKEAVSFALSSKD------LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCCHHHHHHHHHHhcCCC------eEEEEcCCCCCHHHHHHHHHHH
Confidence 34689999999998874311 1467777999999988888755
No 209
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.048 Score=58.77 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=39.5
Q ss_pred ccccccccCCCC---CCccccccCcccchhhhhhhccCCCCCCCCcccccccc
Q 001680 742 SSAICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 791 (1032)
Q Consensus 742 ~~~~C~ic~d~~---~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~ 791 (1032)
...+|.+|.... +.-++++|.|.|-..|+..|+.+....|| .|++.+.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CP--vCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCP--VCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCC--ccCCCCC
Confidence 346899998754 33588999999999999999999999999 5776653
No 210
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=92.66 E-value=0.075 Score=59.09 Aligned_cols=50 Identities=26% Similarity=0.786 Sum_probs=41.4
Q ss_pred ccccccccccCCCCCCccccccCcccchhhhhhhccCC-CCCCCCcccccc
Q 001680 740 ETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD-DNMCPAPRCKEQ 789 (1032)
Q Consensus 740 e~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~-~~~cp~~~c~~~ 789 (1032)
-+....|-||.+...+--+.+|||..|..|+..|-..+ +..||.+.|...
T Consensus 366 gsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 366 GSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred cchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 34566899999999999999999999999999998655 678996666543
No 211
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.61 E-value=0.3 Score=57.05 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=90.1
Q ss_pred ccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhh----cCc--
Q 001680 829 YISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQ----HCI-- 902 (1032)
Q Consensus 829 ~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~----~gi-- 902 (1032)
..++|+.....++.++...+- +.|.||..+.+.+++-...++ .|-
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~-----------------------------R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L 556 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGL-----------------------------RCIAFCPSRKLCELVLCLTREILAETAPHL 556 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCC-----------------------------cEEEeccHHHHHHHHHHHHHHHHHHhhHHH
Confidence 357788888888888776654 999999999887766544332 222
Q ss_pred --eEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCc
Q 001680 903 --QYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT 976 (1032)
Q Consensus 903 --~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~ 976 (1032)
.+..+.|+-..++|.++-.+.-.+ . -.-+++|.|...|+++-.-+.|+++..|.+-+...|-.||++|-...
T Consensus 557 V~~i~SYRGGY~A~DRRKIE~~~F~G-~-L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 557 VEAITSYRGGYIAEDRRKIESDLFGG-K-LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred HHHHHhhcCccchhhHHHHHHHhhCC-e-eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 134577888889998886654433 3 33466889999999999999999999999999999999999996543
No 212
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=92.54 E-value=0.81 Score=57.46 Aligned_cols=99 Identities=21% Similarity=0.208 Sum_probs=74.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCce-EEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCcccccccc--CCEEEEec
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVA--ASHVILLD 955 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~-~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~--A~~VI~~D 955 (1032)
++|||...-.++..+...|...... .+...|.. .+.++++.|....+. .+++.+....+|+|+.. +..||+.-
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vvI~~ 556 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVVIVG 556 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEEEEe
Confidence 8899999999999999999877653 33444544 455899999986544 56667799999999998 57788888
Q ss_pred CCCC-CC-----------------------------hHHHHhHhhhccCCcccEEE
Q 001680 956 LWWN-PT-----------------------------TEDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 956 p~WN-p~-----------------------------~e~QAigRi~RiGQ~k~V~V 981 (1032)
.||- |. ...|++||+.|--+.+.|.|
T Consensus 557 lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 557 LPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8874 22 23499999999655666554
No 213
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=92.23 E-value=0.34 Score=53.33 Aligned_cols=58 Identities=24% Similarity=0.185 Sum_probs=36.6
Q ss_pred CceEEEcChhhH----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchhhhcc
Q 001680 410 AGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 471 (1032)
Q Consensus 410 ~~tLIV~P~sLl----~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~l~~~ 471 (1032)
+++-||+.+..| .+|...+-+++ .+++-...+..........-..||+-+|-..+.-+
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L----Glsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD 180 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL----GLSVGIITSDMSSEERREAYAADIVYGTNSEFGFD 180 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT----T--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHH
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh----hhccccCccccCHHHHHHHHhCcccccccchhhHH
Confidence 447788887755 56999998888 57887777655432222334568888877666543
No 214
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.027 Score=62.18 Aligned_cols=49 Identities=27% Similarity=0.741 Sum_probs=39.8
Q ss_pred ccccccccCCCCCCcc-ccccCcccchhhhhhhccCCCCCCCCccccccccc
Q 001680 742 SSAICCVCSDPPEDSV-VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 792 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~v-vt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~ 792 (1032)
....|++|++-....+ ...|+|-||.+||-.-+....+.|| .||..+..
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecp--tcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECP--TCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCc--hHHhhccc
Confidence 4568999998776654 4489999999999999999999999 67765543
No 215
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.92 E-value=1 Score=56.85 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=52.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhc-CceEEeeCCCCCHHHHHHHHHhhccC---ccccEEEeecCCCcccccccc--CCEEE
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTD---REITVMLMSLKAGNLGLNMVA--ASHVI 952 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~-gi~~~~l~Gs~s~~eR~~~i~~F~~~---~~~~VLLlStkagg~GLNL~~--A~~VI 952 (1032)
.+|||.....+++.+...|... +.. +...|. ..|.++++.|.+. ++..||+. +.+..+|+++.. +..||
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g-~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFG-LQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEE-eccccccccCCCCceEEEE
Confidence 5778777778888888888643 333 344554 3578899888742 23345554 588899999986 78899
Q ss_pred EecCCC
Q 001680 953 LLDLWW 958 (1032)
Q Consensus 953 ~~Dp~W 958 (1032)
+.-+|+
T Consensus 611 I~kLPF 616 (697)
T PRK11747 611 ITKIPF 616 (697)
T ss_pred EEcCCC
Confidence 988776
No 216
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.91 E-value=1.1 Score=47.09 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHH
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 342 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali 342 (1032)
+|-+.|++++..++.... +-.+|-=..|.|||...-.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-----~~~~l~G~aGtGKT~~l~~~~ 39 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-----RVSVLQGPAGTGKTTLLKALA 39 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-----SEEEEEESTTSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC-----eEEEEEECCCCCHHHHHHHHH
Confidence 377899999999985432 124666668999998665544
No 217
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.85 E-value=0.96 Score=57.27 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=69.6
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCc-------eEEeeCCCCCHHHHHHHHHhhccC---ccccEEEeec--CCCccccccc
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCI-------QYRRLDGTMSLPARDRAVKDFNTD---REITVMLMSL--KAGNLGLNMV 946 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi-------~~~~l~Gs~s~~eR~~~i~~F~~~---~~~~VLLlSt--kagg~GLNL~ 946 (1032)
.+|||-..-..|+.+...+...|+ ..+.+.+.. ..++.+++++|... +...||+ +. ...+||+|+.
T Consensus 524 g~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~-av~gGk~sEGIDf~ 601 (705)
T TIGR00604 524 GIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLL-SVAGGKVSEGIDFC 601 (705)
T ss_pred cEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEE-EecCCcccCccccC
Confidence 788888888888888877765532 123333332 25889999999752 1223444 44 5678999999
Q ss_pred c--CCEEEEecCCC-CCC------------------------------hHHHHhHhhhccCCcccEEE
Q 001680 947 A--ASHVILLDLWW-NPT------------------------------TEDQAVDRAHRIGQTRPVTV 981 (1032)
Q Consensus 947 ~--A~~VI~~Dp~W-Np~------------------------------~e~QAigRi~RiGQ~k~V~V 981 (1032)
+ +..||++.+|+ ||. ...||+||+.|--+-+.+.|
T Consensus 602 ~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ii 669 (705)
T TIGR00604 602 DDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIV 669 (705)
T ss_pred CCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEE
Confidence 8 78899999887 542 12499999999777666543
No 218
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=91.72 E-value=5.8 Score=51.11 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHhhccC---ccccEEEeecCCCccccccccCCEEEEecCCCCCChHHHHhHhhhccCCccc
Q 001680 918 RAVKDFNTD---REITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRP 978 (1032)
Q Consensus 918 ~~i~~F~~~---~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi~RiGQ~k~ 978 (1032)
..|.++-.. ....+++++|.+...|+++-. +.+| -||. .-....|+.||+.|-|+...
T Consensus 824 ~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~df-d~~~-~~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 824 DEIIDLMQNSPALNHLFIVLATPVEEVGRDHDY-DWAI-ADPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred HHHHHHHhcccccCCCeEEEEeeeEEEEecccC-Ceee-eccC-cHHHHHHHhhcccccccCCC
Confidence 344444432 245678889999999999753 3333 2332 23567899999999998654
No 219
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.69 E-value=0.078 Score=56.76 Aligned_cols=44 Identities=30% Similarity=0.637 Sum_probs=37.8
Q ss_pred ccccccCCCCCCcccc-ccCcccchhhhhhhccCCCCCCCCcccc
Q 001680 744 AICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCK 787 (1032)
Q Consensus 744 ~~C~ic~d~~~~~vvt-~CgH~fC~~Ci~~~~~~~~~~cp~~~c~ 787 (1032)
..|+.|......|+-| .|+|.||.+||...+-..+..||.|.-+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence 5699999988888888 9999999999999888889999954433
No 220
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.37 E-value=0.66 Score=53.58 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.0
Q ss_pred ccccEEEEecCcccCC
Q 001680 535 VGWFRVVLDEAQTIKN 550 (1032)
Q Consensus 535 ~~w~rVIlDEAH~iKN 550 (1032)
-.+++|||||||.+..
T Consensus 82 ~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRT 97 (352)
T ss_pred CcCCEEEEehhHhhhh
Confidence 4588999999999987
No 221
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=91.26 E-value=0.16 Score=60.27 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=32.9
Q ss_pred ccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 295 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 295 ~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
.+...|-+-|+.|+.+.+.... . -++=-..|.|||.+..-+|..
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~k~--l----~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINNKD--L----LIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred cCCccccHHHHHHHHHHhccCC--c----eEeeCCCCCCceeeHHHHHHH
Confidence 3455789999999999886532 2 356667899999988777754
No 222
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.17 E-value=0.07 Score=53.96 Aligned_cols=35 Identities=40% Similarity=0.850 Sum_probs=29.2
Q ss_pred cccccccccCCCCCCccccccCcccchhhhh-hhcc
Q 001680 741 TSSAICCVCSDPPEDSVVTMCGHVFCYQCAS-EYIT 775 (1032)
Q Consensus 741 ~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~-~~~~ 775 (1032)
.-...|.+|-...+.||++.|||.||..|.. .|-.
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k 229 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK 229 (259)
T ss_pred CCceeehhchhhccchhhhhcchhHHHHHHHHHhcc
Confidence 3455899999999999999999999999954 4443
No 223
>PHA02533 17 large terminase protein; Provisional
Probab=90.85 E-value=2.8 Score=51.02 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=28.9
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 296 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 296 ~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
....|.|+|+.-+.+|..... .++.=.=..|||..+.++++.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~-------~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRF-------NACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeE-------EEEEEcCcCChHHHHHHHHHH
Confidence 345799999999888742111 245555689999988766654
No 224
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=0.1 Score=58.47 Aligned_cols=43 Identities=28% Similarity=0.724 Sum_probs=36.5
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCK 787 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~ 787 (1032)
....|++|.+....|.+..|+|.||..|+...+. ....|| .|+
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp--~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCP--VCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCc--ccC
Confidence 4668999999999999999999999999999887 445666 566
No 225
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=90.10 E-value=2.4 Score=49.63 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhc
Q 001680 300 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 347 (1032)
Q Consensus 300 LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~ 347 (1032)
.+|.| +.+|....+.-....-|+|--..|.|||+.-++||...+.
T Consensus 17 iYPEQ---~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~ 61 (755)
T KOG1131|consen 17 IYPEQ---YEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQL 61 (755)
T ss_pred cCHHH---HHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHH
Confidence 67777 5677765443212233799999999999999999877544
No 226
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=89.88 E-value=0.19 Score=43.90 Aligned_cols=41 Identities=34% Similarity=0.978 Sum_probs=30.2
Q ss_pred ccccccccCCCCCCc-------------cccccCcccchhhhhhhccCCCCCCCC
Q 001680 742 SSAICCVCSDPPEDS-------------VVTMCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~-------------vvt~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
....|+||.++..++ +...|||.|...|+..++.... .||.
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~ 71 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPL 71 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TT
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCC
Confidence 345699999877321 4458999999999999996554 7774
No 227
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=89.80 E-value=0.13 Score=56.24 Aligned_cols=51 Identities=27% Similarity=0.695 Sum_probs=41.2
Q ss_pred hccccccccccCCCC-CCccccccCcccchhhhhhhccCCCCCCCCccccccc
Q 001680 739 LETSSAICCVCSDPP-EDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 790 (1032)
Q Consensus 739 le~~~~~C~ic~d~~-~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l 790 (1032)
++.....|++|.... ++.+++.-|-+||+.|+-.|+. ..+.||+.+|....
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 344677899998764 5567888899999999999988 66899998887543
No 228
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=89.70 E-value=1.2 Score=44.46 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhcCc----eEEeeCCCCCHHHHHHHHHhhccCcc-ccEEEeecCC--Ccccccccc--CCEEEEecCCC
Q 001680 889 MLDLVENSLNQHCI----QYRRLDGTMSLPARDRAVKDFNTDRE-ITVMLMSLKA--GNLGLNMVA--ASHVILLDLWW 958 (1032)
Q Consensus 889 ~ld~L~~~L~~~gi----~~~~l~Gs~s~~eR~~~i~~F~~~~~-~~VLLlStka--gg~GLNL~~--A~~VI~~Dp~W 958 (1032)
.++.+...+...++ .-+.+.+.. ..+..+++++|+...+ ..-+|+++.. .+||+||.. +..||+.-.|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 45555566655543 223344433 2455789999996422 0134444444 789999998 67788888775
No 229
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.31 E-value=2.8 Score=53.87 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=27.2
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHH
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 342 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali 342 (1032)
.+.||-|.+-...+.+......+ .++--.+|.|||+..+.-+
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~~~---~~~eA~tGtGKT~ayllp~ 285 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDGPA---SFIEAQTGIGKTYGYLLPL 285 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCCCc---EEEECCCCCcHHHHHHHHH
Confidence 47899999855555543332211 3556689999998665443
No 230
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.18 Score=58.14 Aligned_cols=48 Identities=40% Similarity=0.922 Sum_probs=39.5
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 792 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~ 792 (1032)
+...|++|......|+.++|||.||..|+...+. ....|| .|+..+..
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp--~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECP--LCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCc--cccccccc
Confidence 5678999999999999999999999999888555 556777 47776654
No 231
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=88.98 E-value=2.5 Score=52.15 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=32.2
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCC
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQN 577 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N 577 (1032)
.+++||||||-.+-. ....+.+..++...|++|.|=|-|=
T Consensus 259 ~~dvlIiDEaSMvd~--~l~~~ll~al~~~~rlIlvGD~~QL 298 (586)
T TIGR01447 259 PLDVLVVDEASMVDL--PLMAKLLKALPPNTKLILLGDKNQL 298 (586)
T ss_pred cccEEEEcccccCCH--HHHHHHHHhcCCCCEEEEECChhhC
Confidence 578999999999964 3566677778888999999987654
No 232
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=88.79 E-value=2.5 Score=52.21 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=33.7
Q ss_pred ccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCC
Q 001680 535 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNS 578 (1032)
Q Consensus 535 ~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~ 578 (1032)
..+++||||||-.+- ....++.+..+....|++|-|=|-|-.
T Consensus 264 l~~dvlIvDEaSMvd--~~lm~~ll~al~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 264 LHLDVLVVDEASMVD--LPMMARLIDALPPHARVIFLGDRDQLA 305 (615)
T ss_pred CCCCeEEEChHhccc--HHHHHHHHHhcccCCEEEEecchhhcC
Confidence 356899999999995 345667788889999999999886653
No 233
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=0.21 Score=56.18 Aligned_cols=43 Identities=23% Similarity=0.627 Sum_probs=36.6
Q ss_pred ccccccCCCCCC---ccccccCcccchhhhhhhccCCCCCCCCccc
Q 001680 744 AICCVCSDPPED---SVVTMCGHVFCYQCASEYITGDDNMCPAPRC 786 (1032)
Q Consensus 744 ~~C~ic~d~~~~---~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c 786 (1032)
..|+||+|..+. -.+-+|.|.|-..||..|++..+..||+|.|
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCC
Confidence 589999987543 4678999999999999999999889996555
No 234
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=88.22 E-value=2.2 Score=54.09 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.8
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCC
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQN 577 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N 577 (1032)
..++||||||+.+-.. ...+.+..++...+++|-|=|-|-
T Consensus 416 ~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 416 DCDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred cCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECccccc
Confidence 3578999999999543 445666777888899999987654
No 235
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=88.14 E-value=0.12 Score=56.87 Aligned_cols=47 Identities=28% Similarity=0.731 Sum_probs=37.0
Q ss_pred cccccccCCCCCC-ccccccCcccchhhhhhhccCCCCCCCCccccccccc
Q 001680 743 SAICCVCSDPPED-SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 792 (1032)
Q Consensus 743 ~~~C~ic~d~~~~-~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~ 792 (1032)
...|.+|.--..+ ..++.|-|.||..||-.++.. ...||+ |...+..
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~--C~i~ih~ 62 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPT--CDIVIHK 62 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCc--cceeccC
Confidence 4579999887766 478999999999999999887 788995 5444443
No 236
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=87.88 E-value=0.73 Score=56.33 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.1
Q ss_pred cceeecCCCCchHHHHHHHHHh
Q 001680 323 GGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali~~ 344 (1032)
-.|+|-++|.|||-|.=-++..
T Consensus 273 vvIIcGeTGsGKTTQvPQFLYE 294 (1172)
T KOG0926|consen 273 VVIICGETGSGKTTQVPQFLYE 294 (1172)
T ss_pred eEEEecCCCCCccccchHHHHH
Confidence 3799999999999998766643
No 237
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=86.90 E-value=8.2 Score=45.56 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=90.9
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCc-cccccccCCEEEEecCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGN-LGLNMVAASHVILLDLW 957 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg-~GLNL~~A~~VI~~Dp~ 957 (1032)
++|||...---.-.|...|++.++.++.++--++..+-.++-..|..+ ...+||.|-++-= .=..+..+.+||||.||
T Consensus 302 ~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viFY~~P 380 (442)
T PF06862_consen 302 GTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIFYGPP 380 (442)
T ss_pred cEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEEECCC
Confidence 899998866666678889999999999999999999999999999976 7889999854421 23356679999999999
Q ss_pred CCCChHHHHhHhhhccCC----cccEEEEEEEeCCC-H-HHHHHHHHHHH
Q 001680 958 WNPTTEDQAVDRAHRIGQ----TRPVTVTRLTIRDT-V-EDRILKLQDDK 1001 (1032)
Q Consensus 958 WNp~~e~QAigRi~RiGQ----~k~V~VyrLi~~~T-i-Ee~I~~lq~~K 1001 (1032)
-+|.-+...+.-+..-.+ ..+..|.-|+++=. . =|+|...+..+
T Consensus 381 ~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~ 430 (442)
T PF06862_consen 381 ENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERAS 430 (442)
T ss_pred CChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHH
Confidence 999999888766555443 33456666666532 1 25555544433
No 238
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=0.29 Score=59.81 Aligned_cols=45 Identities=24% Similarity=0.647 Sum_probs=38.5
Q ss_pred cccccccccCCCCCC-----ccccccCcccchhhhhhhccCCCCCCCCccc
Q 001680 741 TSSAICCVCSDPPED-----SVVTMCGHVFCYQCASEYITGDDNMCPAPRC 786 (1032)
Q Consensus 741 ~~~~~C~ic~d~~~~-----~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c 786 (1032)
..+..|.+|.|.+.. +-..+|+|+||..|+..|+.. ...||.+.|
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~ 338 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRT 338 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchh
Confidence 357899999999877 788899999999999999876 778996554
No 239
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.23 E-value=0.36 Score=52.34 Aligned_cols=48 Identities=31% Similarity=0.578 Sum_probs=34.5
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 792 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~ 792 (1032)
-...|.+|-.....||++.|+|.||..|...-+... ..|. .|..++..
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~--vC~~~t~g 287 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCY--VCSQQTHG 287 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccC-Ccce--eccccccc
Confidence 345699999999999999999999999966543321 2333 56554433
No 240
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.88 E-value=0.3 Score=51.01 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=40.8
Q ss_pred ccccccccCC-CCCC----cccc-ccCcccchhhhhhhccCCCCCCCCcccccccccc
Q 001680 742 SSAICCVCSD-PPED----SVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 793 (1032)
Q Consensus 742 ~~~~C~ic~d-~~~~----~vvt-~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~ 793 (1032)
.+..|++|.. .-.. -++. .|-|-.|..|+..+++.+...||.+.|...|...
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 3557999963 3222 2344 4999999999999999999999999999877654
No 241
>PRK04296 thymidine kinase; Provisional
Probab=83.55 E-value=3 Score=43.58 Aligned_cols=35 Identities=26% Similarity=0.137 Sum_probs=22.8
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc-ccCcEEEEec
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSG 572 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L-~a~~r~lLTG 572 (1032)
.+++|||||+|.+.. .+....+..+ .....+++||
T Consensus 78 ~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 78 KIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred CCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEe
Confidence 367899999998843 2344445553 3455677776
No 242
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=82.90 E-value=5.3 Score=49.04 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=39.5
Q ss_pred CccccccEEEEecCccc----CCcccHHHHHHHhc---ccCcEEEEeccCCCCChHHHHHHHH
Q 001680 532 LAKVGWFRVVLDEAQTI----KNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFR 587 (1032)
Q Consensus 532 L~~~~w~rVIlDEAH~i----KN~~S~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~ 587 (1032)
|......+|++||...+ ++.......+.... ....+.++..||.......++.++.
T Consensus 130 l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 130 LRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred cccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 66777889999999987 33445555555444 4568999999999886555555443
No 243
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.64 E-value=0.6 Score=51.46 Aligned_cols=35 Identities=26% Similarity=0.753 Sum_probs=31.6
Q ss_pred cccccccccCCCCCCccccccCcccchhhhhhhcc
Q 001680 741 TSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYIT 775 (1032)
Q Consensus 741 ~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~ 775 (1032)
..+..|+||-..+..+++++|+|--|+.||.+++-
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm 454 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM 454 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh
Confidence 35678999999999999999999999999998764
No 244
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.30 E-value=0.59 Score=49.85 Aligned_cols=54 Identities=35% Similarity=0.760 Sum_probs=41.0
Q ss_pred ccccccccCCCCCCc----------cccccCcccchhhhhhh-ccCCCCCCCCcccccccccccccc
Q 001680 742 SSAICCVCSDPPEDS----------VVTMCGHVFCYQCASEY-ITGDDNMCPAPRCKEQLGADVVFS 797 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~----------vvt~CgH~fC~~Ci~~~-~~~~~~~cp~~~c~~~l~~~~v~~ 797 (1032)
++..|.+|....... .--.|+|+|-..||..+ +-+....|| -|++.++....++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCP--YCKekVdl~rmfs 287 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCP--YCKEKVDLKRMFS 287 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCc--hHHHHhhHhhhcc
Confidence 467899998665433 23489999999999997 677788998 6888776665554
No 245
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=81.18 E-value=6.5 Score=49.69 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=30.5
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhh
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 346 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~ 346 (1032)
.|-.-|++|+...+.-+.- .++--=.|.|||-+...+|..+.
T Consensus 669 ~LN~dQr~A~~k~L~aedy------~LI~GMPGTGKTTtI~~LIkiL~ 710 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDY------ALILGMPGTGKTTTISLLIKILV 710 (1100)
T ss_pred hcCHHHHHHHHHHHhccch------heeecCCCCCchhhHHHHHHHHH
Confidence 5888999999888866543 23333459999998888875543
No 246
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=80.95 E-value=2.9 Score=47.36 Aligned_cols=42 Identities=29% Similarity=0.292 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhh
Q 001680 300 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 346 (1032)
Q Consensus 300 LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~ 346 (1032)
.--+|+.|+.-++.-.-. + ..|.-.-|.|||+-|+|..+.+-
T Consensus 229 rn~eQ~~ALdlLld~dI~-l----V~L~G~AGtGKTlLALaAgleqv 270 (436)
T COG1875 229 RNAEQRVALDLLLDDDID-L----VSLGGKAGTGKTLLALAAGLEQV 270 (436)
T ss_pred ccHHHHHHHHHhcCCCCC-e----EEeeccCCccHhHHHHHHHHHHH
Confidence 445999999877743322 2 45666789999999888876643
No 247
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.10 E-value=0.92 Score=50.87 Aligned_cols=52 Identities=33% Similarity=0.711 Sum_probs=37.4
Q ss_pred cccccccCCCC----CCccccccCcccchhhhhhhccCCCC--CCCCccccccccccccc
Q 001680 743 SAICCVCSDPP----EDSVVTMCGHVFCYQCASEYITGDDN--MCPAPRCKEQLGADVVF 796 (1032)
Q Consensus 743 ~~~C~ic~d~~----~~~vvt~CgH~fC~~Ci~~~~~~~~~--~cp~~~c~~~l~~~~v~ 796 (1032)
.++|.||.|-. +..-+..|||+|-..|+..|+.++-. .|| .|+-.+....++
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cp--ic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCP--ICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCC--ceeecccceeee
Confidence 46899997642 22456679999999999999987654 565 676555555555
No 248
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.58 E-value=1.1 Score=50.89 Aligned_cols=58 Identities=29% Similarity=0.658 Sum_probs=42.9
Q ss_pred HhhhccccccccccCCCCCC---ccccccCcccchhhhhhhccC----C---CCCCCCcccccccccc
Q 001680 736 LSRLETSSAICCVCSDPPED---SVVTMCGHVFCYQCASEYITG----D---DNMCPAPRCKEQLGAD 793 (1032)
Q Consensus 736 l~~le~~~~~C~ic~d~~~~---~vvt~CgH~fC~~Ci~~~~~~----~---~~~cp~~~c~~~l~~~ 793 (1032)
+..+..+...|++|.+.... -+..+|+|+||..|...|.+. . .-.||.+.|+......
T Consensus 177 ~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g 244 (445)
T KOG1814|consen 177 LEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPG 244 (445)
T ss_pred HHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCch
Confidence 33444567789999986543 578899999999999988642 2 2389999998765544
No 249
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=78.38 E-value=1.1 Score=46.01 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=12.5
Q ss_pred cCCCcEEEEcchhhhc
Q 001680 455 LAKYDVVLTTYSIVTN 470 (1032)
Q Consensus 455 l~~~dVVItTY~~l~~ 470 (1032)
...+||||++|..+..
T Consensus 117 ~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 117 AKNADIVICNYNYLFD 132 (174)
T ss_dssp GGG-SEEEEETHHHHS
T ss_pred cccCCEEEeCHHHHhh
Confidence 4568999999998865
No 250
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=77.88 E-value=12 Score=46.84 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=32.1
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChHHHHHHHHHHc
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLK 590 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~ 590 (1032)
+|.++||||+|.+.+.. ....++.| ....+++|+.|=.+.=+.-|.|-+..++
T Consensus 119 r~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~ 174 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFN 174 (830)
T ss_pred CceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEe
Confidence 46789999999996432 22334444 3456888888765544444444443333
No 251
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.52 E-value=1.1 Score=47.25 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=29.3
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhcc
Q 001680 743 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYIT 775 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~ 775 (1032)
..-|+.|+.+..+||+++-||+||.+||-+++-
T Consensus 43 FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 345889999999999999999999999988763
No 252
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=77.25 E-value=1.4 Score=51.45 Aligned_cols=41 Identities=34% Similarity=0.820 Sum_probs=35.5
Q ss_pred ccccccccCCCCCCcccc-ccCcccchhhhhhhccCCCCCCCC
Q 001680 742 SSAICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt-~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
..-.|++|..+..+|+.+ .|||.||..|+..+++. ...||+
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~ 61 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPV 61 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcc
Confidence 346799999999999995 99999999999998877 667773
No 253
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=75.67 E-value=13 Score=39.93 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=69.7
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCc
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
.+-|||-|.+-+..|.+-. ...+.++=--||-|||-..+=+++.....
T Consensus 21 ~iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~~LAd---------------------------- 68 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLALALAD---------------------------- 68 (229)
T ss_pred CceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHHHHcC----------------------------
Confidence 4469999999999998532 23457889999999997766555442211
Q ss_pred CcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCCCCC-Ccc--
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPV-- 453 (1032)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~-~~~-- 453 (1032)
..+=+-||||.+|+.|-..-+...+..-.+-+++.+.=+.... +..
T Consensus 69 -------------------------------g~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~ 117 (229)
T PF12340_consen 69 -------------------------------GSRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETL 117 (229)
T ss_pred -------------------------------CCcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHH
Confidence 0122689999999999988888777542222333332222111 111
Q ss_pred ---------ccCCCcEEEEcchhhhc
Q 001680 454 ---------ELAKYDVVLTTYSIVTN 470 (1032)
Q Consensus 454 ---------~l~~~dVVItTY~~l~~ 470 (1032)
....-.|++++.+.+.+
T Consensus 118 ~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 118 EKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred HHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 11345788988887654
No 254
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=75.50 E-value=2.4 Score=38.00 Aligned_cols=44 Identities=27% Similarity=0.711 Sum_probs=30.6
Q ss_pred cccccCCCCCC--ccccccCcccchhhhhhhccCC--CCCCCCccccccc
Q 001680 745 ICCVCSDPPED--SVVTMCGHVFCYQCASEYITGD--DNMCPAPRCKEQL 790 (1032)
Q Consensus 745 ~C~ic~d~~~~--~vvt~CgH~fC~~Ci~~~~~~~--~~~cp~~~c~~~l 790 (1032)
.|+.|..+-++ .+...|+|.|-..||..++... ...|| .||...
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CP--mCR~~w 81 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCP--MCRQPW 81 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCC--CcCCee
Confidence 34445444333 3667999999999999999864 45777 677643
No 255
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=74.77 E-value=1.7 Score=48.52 Aligned_cols=50 Identities=24% Similarity=0.679 Sum_probs=37.6
Q ss_pred hhccccccccccCCCCC-C------------ccccccCcccchhhhhhhccCCCCCCCCccccccc
Q 001680 738 RLETSSAICCVCSDPPE-D------------SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 790 (1032)
Q Consensus 738 ~le~~~~~C~ic~d~~~-~------------~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l 790 (1032)
.|..++..|.||.|.+- . |---+|||++-..|+..|+... ..|| .||.++
T Consensus 282 ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCP--ICr~p~ 344 (491)
T COG5243 282 QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCP--ICRRPV 344 (491)
T ss_pred hhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCC--cccCcc
Confidence 34567899999998732 1 3566999999999999998653 4677 677664
No 256
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.19 E-value=1.6 Score=49.58 Aligned_cols=46 Identities=24% Similarity=0.788 Sum_probs=34.4
Q ss_pred cccccccccCCCCCCc--------cccccCcccchhhhhhhccCCC------CCCCCccccc
Q 001680 741 TSSAICCVCSDPPEDS--------VVTMCGHVFCYQCASEYITGDD------NMCPAPRCKE 788 (1032)
Q Consensus 741 ~~~~~C~ic~d~~~~~--------vvt~CgH~fC~~Ci~~~~~~~~------~~cp~~~c~~ 788 (1032)
+.+..|+||.+..... ++..|.|.||..|+..|..... ..|| .||.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP--~CRv 218 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCP--FCRV 218 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCC--cccC
Confidence 4678999999876544 3478999999999999874433 4677 5554
No 257
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=74.15 E-value=5.8 Score=43.66 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=16.9
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001680 324 GILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~ 344 (1032)
-||.=..|.|||..|-++...
T Consensus 45 vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999988766543
No 258
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=74.06 E-value=23 Score=40.91 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=27.1
Q ss_pred CchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhh
Q 001680 300 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 300 LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~ 345 (1032)
|..| ..++..+........-+..-|+.-+.|+|||..+..++...
T Consensus 25 l~Gh-~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 25 LFGH-EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred ccCc-HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 4333 34444444433322212346789999999999888887554
No 259
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.57 E-value=1.3 Score=51.04 Aligned_cols=45 Identities=29% Similarity=0.722 Sum_probs=35.3
Q ss_pred cccccccCCCCCC-----------------ccccccCcccchhhhhhhccCCCCCCCCcccc
Q 001680 743 SAICCVCSDPPED-----------------SVVTMCGHVFCYQCASEYITGDDNMCPAPRCK 787 (1032)
Q Consensus 743 ~~~C~ic~d~~~~-----------------~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~ 787 (1032)
...|.||..+.+. =++|+|.|+|-.+|+..++.+..-.||+|.|.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~p 632 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCP 632 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCC
Confidence 4579999875431 25779999999999999998777789976553
No 260
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=71.75 E-value=3 Score=40.17 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=26.7
Q ss_pred cEEEEecCcccCCcccHHHHHHHhc--ccCcEEEEeccC
Q 001680 538 FRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGTP 574 (1032)
Q Consensus 538 ~rVIlDEAH~iKN~~S~~~kal~~L--~a~~r~lLTGTP 574 (1032)
.+|||||+|++. +......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 579999999984 24555555656 566789999999
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=70.30 E-value=54 Score=37.22 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=32.3
Q ss_pred cccEEEEecCcccCCccc-HHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHcc
Q 001680 536 GWFRVVLDEAQTIKNHRT-QVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 591 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S-~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p 591 (1032)
.|.+|||||+|.+-.... ...+.+.......+++|++++...-+..|-+-...+..
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 367899999999853221 11122222245567889888766555555554443333
No 262
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=70.08 E-value=40 Score=35.79 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=17.8
Q ss_pred ccceeecCCCCchHHHHHHHHHh
Q 001680 322 LGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 322 ~GGILADemGLGKTiqaIali~~ 344 (1032)
..-+|-=+.|.|||..+.++...
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34677889999999988776643
No 263
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=69.80 E-value=2.5 Score=46.08 Aligned_cols=47 Identities=26% Similarity=0.673 Sum_probs=36.0
Q ss_pred cccccCC-----CCCCccccccCcccchhhhhhhccCCCCCCCCcccccccccc
Q 001680 745 ICCVCSD-----PPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 793 (1032)
Q Consensus 745 ~C~ic~d-----~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~ 793 (1032)
.|+.|-. +.....+..|+|..|..|+..++......|| .|...+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~Cp--eC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCP--ECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCC--cccchhhhc
Confidence 4777743 2233466799999999999999999999999 787766544
No 264
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=69.61 E-value=17 Score=45.54 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccCCCCCCCCCcCcc
Q 001680 300 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 379 (1032)
Q Consensus 300 LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1032)
....|-.++.-+.+.-..+. ..-+|---.|.|||+++..++...
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~a~~~~~~---------------------------------- 53 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTMANVIAQV---------------------------------- 53 (655)
T ss_pred CChHHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHHHHHHHHh----------------------------------
Confidence 34578888877765543221 123566778999999988777431
Q ss_pred cccccCCCCCCCCCCccccccccccCCCCCCceEEEcChh-hHHHHHHHHHHhCCC
Q 001680 380 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPD 434 (1032)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~QW~~Ei~k~~~~ 434 (1032)
.+++|||+|.- +..||.+|++.|+|.
T Consensus 54 -----------------------------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 54 -----------------------------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred -----------------------------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 14599999976 668999999999974
No 265
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=2.1 Score=48.05 Aligned_cols=49 Identities=31% Similarity=0.702 Sum_probs=40.1
Q ss_pred ccccccccCCCCCCccccccCcc-cchhhhhhhccCCCCCCCCcccccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHV-FCYQCASEYITGDDNMCPAPRCKEQLGAD 793 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~-fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~ 793 (1032)
+..+|.||...+.+.++.+|-|. .|..|...+. ...+.|| .||..+...
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CP--ICRqpi~~l 338 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCP--ICRQPIEEL 338 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCC--ccccchHhh
Confidence 56789999999999999999996 8899977655 5567898 688776543
No 266
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=69.02 E-value=2.4 Score=45.17 Aligned_cols=42 Identities=31% Similarity=0.740 Sum_probs=28.0
Q ss_pred ccccCCC--CCCccccccCcccchhhhhhhccCCCCCCCCccccccccc
Q 001680 746 CCVCSDP--PEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 792 (1032)
Q Consensus 746 C~ic~d~--~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~ 792 (1032)
|..|..- ...-.+|.|+|+||..|....... .|+ .|+..+..
T Consensus 6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~C~--lCkk~ir~ 49 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---VCP--LCKKSIRI 49 (233)
T ss_pred eccccccCCCCceeeeechhhhhhhhcccCCcc---ccc--cccceeee
Confidence 5556533 334589999999999997653322 666 67776543
No 267
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=68.96 E-value=3.4 Score=52.19 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=25.1
Q ss_pred cCCchHHHHHHHHHHHhhccCCCccc--ceeecCCCCchHHHHHH
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLG--GILADDQGLGKTISIIA 340 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~G--GILADemGLGKTiqaIa 340 (1032)
..-||-|.+-..-+.+.........+ .++=-.+|.|||+-.|.
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLl 68 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLL 68 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHH
Confidence 47899999865555543332100011 23344799999987653
No 268
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.78 E-value=33 Score=42.63 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 302 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 302 pyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
+|=...+..++...+- ...-|+.-..|.|||-.|.+++..
T Consensus 21 e~vv~~L~~aI~~grl---~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 21 NHVSRALSSALERGRL---HHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHHHHHHHHHHcCCC---CeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555555543321 133489999999999988777754
No 269
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=66.10 E-value=4.2 Score=32.37 Aligned_cols=42 Identities=24% Similarity=0.790 Sum_probs=21.5
Q ss_pred ccccCCCCCCc----cccccCcccchhhhhhhccCCCCCCCCcccccc
Q 001680 746 CCVCSDPPEDS----VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 789 (1032)
Q Consensus 746 C~ic~d~~~~~----vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~ 789 (1032)
|++|.+.++.. .-=.||+-.|..|...++...+..|| .||+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CP--gCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCP--GCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-T--TT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCC--CCCCC
Confidence 56777665322 22289999999999999887788898 67654
No 270
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.12 E-value=35 Score=41.43 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=69.0
Q ss_pred cccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhc-CceEEe
Q 001680 828 EYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRR 906 (1032)
Q Consensus 828 ~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~-gi~~~~ 906 (1032)
...|.|-...+..+......+. ++||.+........+.+.|++. |..+..
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~-----------------------------~vLvlvP~i~L~~Q~~~~l~~~f~~~v~v 55 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGK-----------------------------SVLVLVPEIALTPQMIQRFKYRFGSQVAV 55 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC-----------------------------eEEEEeCcHHHHHHHHHHHHHHhCCcEEE
Confidence 3468898888888877766554 8999999999988888888765 778899
Q ss_pred eCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEec
Q 001680 907 LDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 955 (1032)
Q Consensus 907 l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~D 955 (1032)
++|.++..+|.+...+-.++ +..|++.+..+. =+-+.....||+=+
T Consensus 56 lhs~~~~~er~~~~~~~~~g-~~~IVVGTrsal--f~p~~~l~lIIVDE 101 (505)
T TIGR00595 56 LHSGLSDSEKLQAWRKVKNG-EILVVIGTRSAL--FLPFKNLGLIIVDE 101 (505)
T ss_pred EECCCCHHHHHHHHHHHHcC-CCCEEECChHHH--cCcccCCCEEEEEC
Confidence 99999999998887776644 566766554332 12344444455433
No 271
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=2.4 Score=45.97 Aligned_cols=41 Identities=37% Similarity=0.997 Sum_probs=33.1
Q ss_pred cccccccCCCCCCccccccCc-ccchhhhhhhccCCCCCCCCccccccc
Q 001680 743 SAICCVCSDPPEDSVVTMCGH-VFCYQCASEYITGDDNMCPAPRCKEQL 790 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~vvt~CgH-~fC~~Ci~~~~~~~~~~cp~~~c~~~l 790 (1032)
...|.||.|.|.+=+...||| +-|.+|-..+- .|| .||..+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~-----eCP--ICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN-----ECP--ICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccc-----cCc--hHHHHH
Confidence 457999999999999999999 68999966542 676 677654
No 272
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.78 E-value=12 Score=42.61 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.4
Q ss_pred cceeecCCCCchHHHHHHHHHh
Q 001680 323 GGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali~~ 344 (1032)
.-+|.-+.|.|||..+.+++..
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3688899999999998888754
No 273
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=60.99 E-value=42 Score=42.47 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=53.5
Q ss_pred eEEEEeccHHHHHHHHH----HhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEE
Q 001680 879 KSIVFSQWTRMLDLVEN----SLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 952 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~----~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI 952 (1032)
+++|.+.-...+..+.. .+...|+++..++|+++.++|.+.++...++ ++.|++.+.......+.+.....||
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEEEchHHHhcccchhcccceEE
Confidence 89999988777665544 4455589999999999999999999988865 6778777654454455555554444
No 274
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.53 E-value=21 Score=45.29 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
+.||.|++-..-+++--..+ ..+||--.+|.|||+.+|+..+.
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~---~~~llEsPTGtGKTlslL~~aL~ 52 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG---DEAILEMPSGTGKTISLLSLILA 52 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC---CceEEeCCCCCCccHHHHHHHHH
Confidence 46999999888777655543 34789999999999998877765
No 275
>PRK05580 primosome assembly protein PriA; Validated
Probab=60.04 E-value=48 Score=41.92 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=69.6
Q ss_pred ccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhc-CceEEee
Q 001680 829 YISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRL 907 (1032)
Q Consensus 829 ~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~-gi~~~~l 907 (1032)
..|.|-...+..+......+. ++||.+.....+..+.+.|.+. |..+..+
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~-----------------------------~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGK-----------------------------QALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCC-----------------------------eEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 468899888877777665544 8999999999988888888764 8889999
Q ss_pred CCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEec
Q 001680 908 DGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLD 955 (1032)
Q Consensus 908 ~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~D 955 (1032)
+|+++..+|.+...+...+ ++.|++.+..+. =+.+.....||+=+
T Consensus 222 ~s~~s~~~r~~~~~~~~~g-~~~IVVgTrsal--~~p~~~l~liVvDE 266 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRG-EAKVVIGARSAL--FLPFKNLGLIIVDE 266 (679)
T ss_pred ECCCCHHHHHHHHHHHHcC-CCCEEEeccHHh--cccccCCCEEEEEC
Confidence 9999999998888887755 567777654332 23444555555443
No 276
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.01 E-value=2.4 Score=48.04 Aligned_cols=59 Identities=22% Similarity=0.529 Sum_probs=40.8
Q ss_pred cccccccCCCCCCc-----cccccCcccchhhhhhhccCCCCCCCCccccccccccccccccccc
Q 001680 743 SAICCVCSDPPEDS-----VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLK 802 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~-----vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v~~~~~l~ 802 (1032)
...|++|+|....+ +...|||.|-.+||+.|+. ....-.||.|........++....++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~~~~~cp~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KKTKMQCPLCSGKATKRQIRPEYALR 67 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hhhhhhCcccCChhHHHHHHHHHHHH
Confidence 35799999987655 5669999999999999994 33333334677766655555444443
No 277
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.84 E-value=4.3 Score=43.02 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=35.8
Q ss_pred ccccccccCCCCCC----ccccccCcccchhhhhhhccCCCCCCCCccccccccccc
Q 001680 742 SSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 794 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~----~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~ 794 (1032)
..-+|++|.+.+.. .++.+|||++|.+|++.++..+ -.|| .|...+....
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~p--v~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDP--VTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-cccc--CCCCcCcccc
Confidence 34589999887543 5889999999999999988754 3555 3444444443
No 278
>PRK04195 replication factor C large subunit; Provisional
Probab=59.57 E-value=75 Score=38.41 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=18.6
Q ss_pred cccceeecCCCCchHHHHHHHHH
Q 001680 321 CLGGILADDQGLGKTISIIALIQ 343 (1032)
Q Consensus 321 ~~GGILADemGLGKTiqaIali~ 343 (1032)
....||.-..|.|||..+-+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999988877763
No 279
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=59.32 E-value=12 Score=41.71 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.6
Q ss_pred cceeecCCCCchHHHHHHHHHh
Q 001680 323 GGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali~~ 344 (1032)
+-+|--+.|.|||..|-++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4578899999999988776644
No 280
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=58.60 E-value=20 Score=46.01 Aligned_cols=57 Identities=19% Similarity=0.379 Sum_probs=38.3
Q ss_pred CCCCceEEEcCh-hhHH----HHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchhhh
Q 001680 407 RPAAGTLVVCPA-SVLR----QWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 469 (1032)
Q Consensus 407 ~~~~~tLIV~P~-sLl~----QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~l~ 469 (1032)
.|.+++.+|.|. .|+. -|..-+. .. .++++-..|.... +.....+.+++|||.+..-
T Consensus 971 ~p~~kvvyIap~kalvker~~Dw~~r~~----~~-g~k~ie~tgd~~p-d~~~v~~~~~~ittpek~d 1032 (1230)
T KOG0952|consen 971 YPGSKVVYIAPDKALVKERSDDWSKRDE----LP-GIKVIELTGDVTP-DVKAVREADIVITTPEKWD 1032 (1230)
T ss_pred CCCccEEEEcCCchhhcccccchhhhcc----cC-CceeEeccCccCC-ChhheecCceEEccccccc
Confidence 344678999995 4653 4654332 22 6777777776544 3677888999999987653
No 281
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=58.37 E-value=85 Score=35.31 Aligned_cols=38 Identities=5% Similarity=0.075 Sum_probs=22.6
Q ss_pred cEEEEecCcccCCccc--HHHHHHHhcccCcEEEEeccCC
Q 001680 538 FRVVLDEAQTIKNHRT--QVARACCSLRAKRRWCLSGTPI 575 (1032)
Q Consensus 538 ~rVIlDEAH~iKN~~S--~~~kal~~L~a~~r~lLTGTPi 575 (1032)
..|||||+|.+..... .....+.......++++|++..
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4699999999833221 1122223334566888888654
No 282
>CHL00181 cbbX CbbX; Provisional
Probab=58.34 E-value=23 Score=39.62 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.5
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001680 324 GILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~ 344 (1032)
-+|-=..|.|||..|-++...
T Consensus 62 ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478899999999998888654
No 283
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.83 E-value=27 Score=42.59 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=65.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhc----C-----ceEEeeCCCCCHHHHHHHHHhhccC-ccccEEEeecCCCccccccccC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH----C-----IQYRRLDGTMSLPARDRAVKDFNTD-REITVMLMSLKAGNLGLNMVAA 948 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~----g-----i~~~~l~Gs~s~~eR~~~i~~F~~~-~~~~VLLlStkagg~GLNL~~A 948 (1032)
-+|||----+-++..++.|.+. | +-++-|+.+.+.+...++ |... ++.+-+++.|..+-+.|.....
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCe
Confidence 6788876666665555555433 2 446778899987766555 5543 3556566677888888887777
Q ss_pred CEEEEecCCC--------------------CCChHHHHhHhhhccCCcccEEEEEEEe
Q 001680 949 SHVILLDLWW--------------------NPTTEDQAVDRAHRIGQTRPVTVTRLTI 986 (1032)
Q Consensus 949 ~~VI~~Dp~W--------------------Np~~e~QAigRi~RiGQ~k~V~VyrLi~ 986 (1032)
.+|| ||.+ +.+.-.||.||++|.|--+- |||++
T Consensus 552 ~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKC---fRLYt 604 (902)
T KOG0923|consen 552 KYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKC---FRLYT 604 (902)
T ss_pred EEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCce---EEeec
Confidence 6665 5543 33456799999988886654 45554
No 284
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=56.96 E-value=44 Score=30.84 Aligned_cols=55 Identities=5% Similarity=-0.029 Sum_probs=39.1
Q ss_pred eEEEEec------cHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEE
Q 001680 879 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVML 933 (1032)
Q Consensus 879 KvIIFSq------f~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLL 933 (1032)
+|+||+. +-.....+...|...|++|..++=....+.|+.+.+......-+.|++
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 9999974 456678889999999999988876655666666665554333344544
No 285
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=56.94 E-value=49 Score=41.06 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=24.9
Q ss_pred CccccccEEEEecCcccCCcccHHHHHHHhc--ccCcEEEEecc
Q 001680 532 LAKVGWFRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGT 573 (1032)
Q Consensus 532 L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L--~a~~r~lLTGT 573 (1032)
+....|+++||||||.|+.. .....+-.+ .....|.+|-|
T Consensus 348 iRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 348 IRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred ccCCcccEEEEechhhCCHH--HHHHHHHHHhccCccEEEEecC
Confidence 44557999999999999863 222222222 34456777655
No 286
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.79 E-value=38 Score=41.54 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=19.5
Q ss_pred cccccccCCEEEEecCCCCCChHHHHhHhh
Q 001680 941 LGLNMVAASHVILLDLWWNPTTEDQAVDRA 970 (1032)
Q Consensus 941 ~GLNL~~A~~VI~~Dp~WNp~~e~QAigRi 970 (1032)
.|+ -.-++||++++.-.-..+.|+.--+
T Consensus 932 ~g~--y~p~Yivyhel~~T~keym~cvT~v 959 (1042)
T KOG0924|consen 932 HGL--YTPDYIVYHELLMTTKEYMQCVTSV 959 (1042)
T ss_pred hcC--CCCCeeeehHHHHhHHHHHHHHhhC
Confidence 455 4567888888887777777776544
No 287
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.77 E-value=22 Score=43.46 Aligned_cols=114 Identities=19% Similarity=0.291 Sum_probs=75.8
Q ss_pred eEEEEecc----HHHHHHHHHHhhhc------CceEEeeCCCCCHHHHHHHHHhhcc-CccccEEEeecCCCcccccccc
Q 001680 879 KSIVFSQW----TRMLDLVENSLNQH------CIQYRRLDGTMSLPARDRAVKDFNT-DREITVMLMSLKAGNLGLNMVA 947 (1032)
Q Consensus 879 KvIIFSqf----~~~ld~L~~~L~~~------gi~~~~l~Gs~s~~eR~~~i~~F~~-~~~~~VLLlStkagg~GLNL~~ 947 (1032)
-+|||-.- -.+.+.|...|.+. ++.+.-|...++.....++ |+. .++++-.|++|..+.+.|....
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecc
Confidence 44555432 23456666666544 5678888888886655444 663 4577878889999999999998
Q ss_pred CCEEEEecC----CCCC-----------ChHHHHhHhhhccCCcccEEEEEEEeCCCHHHHHH
Q 001680 948 ASHVILLDL----WWNP-----------TTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 995 (1032)
Q Consensus 948 A~~VI~~Dp----~WNp-----------~~e~QAigRi~RiGQ~k~V~VyrLi~~~TiEe~I~ 995 (1032)
..+||=-.. .+|| ....||.-|++|-|.+.|=+-||++++++....++
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 888772211 1333 33345555666666677889999999988776655
No 288
>PF13245 AAA_19: Part of AAA domain
Probab=56.66 E-value=23 Score=31.14 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.2
Q ss_pred eeecCCCCchHHHHHHHHHhhh
Q 001680 325 ILADDQGLGKTISIIALIQMQR 346 (1032)
Q Consensus 325 ILADemGLGKTiqaIali~~~~ 346 (1032)
++--..|.|||-+++.++....
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4467789999988888887643
No 289
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=56.50 E-value=73 Score=30.19 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=25.0
Q ss_pred ccEEEEecCcccCCcc-cHHHHHHHhcc------cCcEEEEeccCCCC
Q 001680 537 WFRVVLDEAQTIKNHR-TQVARACCSLR------AKRRWCLSGTPIQN 577 (1032)
Q Consensus 537 w~rVIlDEAH~iKN~~-S~~~kal~~L~------a~~r~lLTGTPi~N 577 (1032)
...+|+||++.+.... ......+..+. ...++++++++...
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 4579999999883221 22333344432 45678888887664
No 290
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.85 E-value=5.6 Score=44.79 Aligned_cols=44 Identities=34% Similarity=0.866 Sum_probs=31.5
Q ss_pred ccccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCcccccccc
Q 001680 742 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 791 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~ 791 (1032)
....|.+|.+.+.+.+.-+|||+.| |..-... -..|| .|+..|.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CP--vCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCP--VCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCc--hhHHHHH
Confidence 4568999999999999999999977 5332211 13377 6776654
No 291
>PF04641 Rtf2: Rtf2 RING-finger
Probab=54.63 E-value=8.6 Score=42.39 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=37.0
Q ss_pred ccccccccCCCCCC----ccccccCcccchhhhhhhccCCCCCCCCcccccccccccc
Q 001680 742 SSAICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVV 795 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~----~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~v 795 (1032)
....|+++...+.. .++-+|||+|++.|+.++- ....|| .|...+....+
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp--~c~~~f~~~Di 165 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCP--VCGKPFTEEDI 165 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--cccccc--ccCCccccCCE
Confidence 45689999887753 4677999999999999983 345677 67776665544
No 292
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=54.58 E-value=78 Score=40.52 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=30.6
Q ss_pred cCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 298 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 298 ~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
..|-+-|+.++.-++... . =.+|---.|.|||.++-+++..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~--~----~~il~G~aGTGKTtll~~i~~~ 391 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSG--D----IAVVVGRAGTGKSTMLKAAREA 391 (744)
T ss_pred CCCCHHHHHHHHHHhcCC--C----EEEEEecCCCCHHHHHHHHHHH
Confidence 468999999998887421 1 1478888899999887776643
No 293
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=54.44 E-value=28 Score=39.82 Aligned_cols=43 Identities=28% Similarity=0.213 Sum_probs=29.6
Q ss_pred CccccccEEEEecCcccC--CcccHHHHHHHhcc-cCcEEEEeccC
Q 001680 532 LAKVGWFRVVLDEAQTIK--NHRTQVARACCSLR-AKRRWCLSGTP 574 (1032)
Q Consensus 532 L~~~~w~rVIlDEAH~iK--N~~S~~~kal~~L~-a~~r~lLTGTP 574 (1032)
|..-.....|+|||.... +...+.+.....+. ..+.+++|||-
T Consensus 165 l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 165 LSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred ccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 334445679999998874 45566666666664 44678899984
No 294
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.44 E-value=12 Score=45.04 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCCchHHHHHHHHHhhh
Q 001680 329 DQGLGKTISIIALIQMQR 346 (1032)
Q Consensus 329 emGLGKTiqaIali~~~~ 346 (1032)
.+|.|||++|.+||+...
T Consensus 5 atgsgkt~~ma~lil~~y 22 (812)
T COG3421 5 ATGSGKTLVMAGLILECY 22 (812)
T ss_pred ccCCChhhHHHHHHHHHH
Confidence 479999999999998743
No 295
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=54.01 E-value=46 Score=32.95 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=56.7
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceE--EeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQY--RRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~--~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp 956 (1032)
.|=++||.-.+...+-..+..+|+.+ +.=.|....-.-.++++.|.+|++.+++++-.. .
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E------------------~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLE------------------G 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES-------------------
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEcc------------------C
Confidence 56799999999999999999886654 555676666677889999999999999887644 4
Q ss_pred CCCCChHHHHhHhhhccCCcccEEEEEEE
Q 001680 957 WWNPTTEDQAVDRAHRIGQTRPVTVTRLT 985 (1032)
Q Consensus 957 ~WNp~~e~QAigRi~RiGQ~k~V~VyrLi 985 (1032)
.-||....++.-|+.|- |||.+++-=
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 44667777777776654 999987754
No 296
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=53.99 E-value=73 Score=37.50 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=16.6
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001680 324 GILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~ 344 (1032)
-+|--..|+|||-.+-|+...
T Consensus 139 l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 468888999999988776644
No 297
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=53.96 E-value=66 Score=38.49 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=17.2
Q ss_pred cceeecCCCCchHHHHHHHHHh
Q 001680 323 GGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali~~ 344 (1032)
.-+|.-..|+|||-.+-|+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~ 171 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNY 171 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3578889999999887776644
No 298
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=53.94 E-value=79 Score=40.82 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhh
Q 001680 301 LKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 301 rpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~ 345 (1032)
.++-+..|..++...+-. ..-||.-.-|.|||..+..|...+
T Consensus 20 qe~v~~~L~~~i~~~ri~---Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 20 QEHVTEPLSTALDSGRIN---HAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred cHHHHHHHHHHHHhCCCC---ceEEEECCCCCCHHHHHHHHHHHh
Confidence 344455566666543321 223788999999999888877554
No 299
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=53.79 E-value=78 Score=39.52 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=27.0
Q ss_pred CceEEEcChh-hHHHHHHHHHHhC-C-CCCCcEEEEEeCCCC
Q 001680 410 AGTLVVCPAS-VLRQWARELEDKV-P-DKAALSVLIYHGGSR 448 (1032)
Q Consensus 410 ~~tLIV~P~s-Ll~QW~~Ei~k~~-~-~~~~l~vlv~~G~~r 448 (1032)
+++||.+|+. |..|+.+++.... . ....+++.+..|...
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~n 88 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQE 88 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCcc
Confidence 4589999976 7789999887653 1 112577777777654
No 300
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.55 E-value=5.9 Score=46.21 Aligned_cols=53 Identities=32% Similarity=0.716 Sum_probs=39.2
Q ss_pred cccccccC-CCCC---CccccccCcccchhhhhhhcc-----CCCCCCCCcccccccccccc
Q 001680 743 SAICCVCS-DPPE---DSVVTMCGHVFCYQCASEYIT-----GDDNMCPAPRCKEQLGADVV 795 (1032)
Q Consensus 743 ~~~C~ic~-d~~~---~~vvt~CgH~fC~~Ci~~~~~-----~~~~~cp~~~c~~~l~~~~v 795 (1032)
..+|.+|. +.+. ...+..|+|-||.+|+..++. +....||...|...+..+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 45788888 3332 234778999999999998876 44568988888887776644
No 301
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.45 E-value=57 Score=38.19 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=35.9
Q ss_pred cccEEEEecCcccCCcccHHH---HHHHhcc--cCcEEEEeccCCCCChHHHHHHHHHHcc
Q 001680 536 GWFRVVLDEAQTIKNHRTQVA---RACCSLR--AKRRWCLSGTPIQNSIDDLYSYFRFLKY 591 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~---kal~~L~--a~~r~lLTGTPi~N~l~DL~sll~fL~p 591 (1032)
.+++||||++.+......... +.+.... ....++|+||=-++.+.+++.-+..+.+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 367899999988753322222 2222222 2467899999888888877766665544
No 302
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=53.40 E-value=55 Score=39.20 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=15.9
Q ss_pred cceeecCCCCchHHHHHHHHH
Q 001680 323 GGILADDQGLGKTISIIALIQ 343 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali~ 343 (1032)
+-+|.=+.|+|||-.+-|+..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~ 163 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKN 163 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHH
Confidence 356888999999977666554
No 303
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=53.15 E-value=56 Score=40.97 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=51.0
Q ss_pred eEEEEeccHHHHHHHHHHh----hhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEE
Q 001680 879 KSIVFSQWTRMLDLVENSL----NQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 952 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L----~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI 952 (1032)
+++|.+.....+..+.+.+ ...|+++..++|+++.++|...++...++ ++.|++.+....-..+.+.....||
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCEEEecHHHHhccccccccceEE
Confidence 8888888877766555544 44589999999999999999998888754 5667776544444444444444333
No 304
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=51.62 E-value=1.2e+02 Score=36.92 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=32.5
Q ss_pred ccCCchHHHHHHHHHHH---hhccCCCcccceeecCCCCchHHHHHHHHHhh
Q 001680 297 SVNLLKHQKIALAWMLQ---KETRSLHCLGGILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~---~e~~~~~~~GGILADemGLGKTiqaIali~~~ 345 (1032)
...|.|||+..+.-++- .++....-.-+++--.=|=|||-.+-+++...
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~ 110 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTA 110 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHH
Confidence 56799999999887762 22221122335677777889998776666554
No 305
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=51.54 E-value=23 Score=42.86 Aligned_cols=45 Identities=22% Similarity=0.112 Sum_probs=35.2
Q ss_pred CchHHHHHHHHHHHhhc-----cCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 300 LLKHQKIALAWMLQKET-----RSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 300 LrpyQ~~gv~wml~~e~-----~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
.....++++.|.+.+.. .-..+.|.||+-..|.|||+.|-|+...
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh
Confidence 66778888888887655 2234678999999999999998887753
No 306
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=50.23 E-value=7.5 Score=42.60 Aligned_cols=36 Identities=36% Similarity=0.877 Sum_probs=23.7
Q ss_pred ccccccCCCCC-CccccccCcccchhhhhhhccCCCCCCC
Q 001680 744 AICCVCSDPPE-DSVVTMCGHVFCYQCASEYITGDDNMCP 782 (1032)
Q Consensus 744 ~~C~ic~d~~~-~~vvt~CgH~fC~~Ci~~~~~~~~~~cp 782 (1032)
-.|.-|.-+.. .--...|.|+||++|... ..+..||
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp 127 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICP 127 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc---CccccCc
Confidence 35777766532 345669999999999643 2245666
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.03 E-value=12 Score=46.53 Aligned_cols=49 Identities=29% Similarity=0.722 Sum_probs=36.7
Q ss_pred HHHhhhccccc-----cccccCCCCCCccc-cccCcccchhhhhhhccCCCCCCCCccccc
Q 001680 734 DLLSRLETSSA-----ICCVCSDPPEDSVV-TMCGHVFCYQCASEYITGDDNMCPAPRCKE 788 (1032)
Q Consensus 734 ~~l~~le~~~~-----~C~ic~d~~~~~vv-t~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~ 788 (1032)
..++.+..+.. .|..|.-+.+.|.| -.|||.|-..|+. ..+..|| .|..
T Consensus 826 ~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP--~C~~ 880 (933)
T KOG2114|consen 826 QELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCP--KCLP 880 (933)
T ss_pred HHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCC--ccch
Confidence 34555555555 79999999988754 5999999999988 3456787 5654
No 308
>PRK08084 DNA replication initiation factor; Provisional
Probab=49.84 E-value=1.3e+02 Score=32.59 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=15.8
Q ss_pred cceeecCCCCchHHHHHHHHH
Q 001680 323 GGILADDQGLGKTISIIALIQ 343 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali~ 343 (1032)
.-+|.=..|.|||-.+-++..
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 358888999999976665553
No 309
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.31 E-value=1.7e+02 Score=35.72 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=31.1
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChHHHHHHHHHHccCC
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 593 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~ 593 (1032)
+|.++||||+|.+... .....++.| ....+++|..|-...-+.-+.+-...+...+
T Consensus 119 ~~kV~iIDE~~~ls~~--a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~ 177 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH--SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQ 177 (509)
T ss_pred CcEEEEEEChHhcCHH--HHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCC
Confidence 4678999999999542 222333444 3455677766654444444444433333333
No 310
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.81 E-value=2.1e+02 Score=36.16 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=31.1
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChHHHHHHHHHHc
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLK 590 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~ 590 (1032)
++.+|||||+|.+.. ......++.| ....+++|+.|=...-+.-+.+-+..+.
T Consensus 119 k~KVIIIDEad~Ls~--~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~ 174 (709)
T PRK08691 119 KYKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFV 174 (709)
T ss_pred CcEEEEEECccccCH--HHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhh
Confidence 356899999998853 2222334444 3455788877755555555555443333
No 311
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=48.79 E-value=1e+02 Score=40.86 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=37.5
Q ss_pred CCceEEEcChhhH-----HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchhhh
Q 001680 409 AAGTLVVCPASVL-----RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 469 (1032)
Q Consensus 409 ~~~tLIV~P~sLl-----~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~l~ 469 (1032)
.+++.-|.|...+ .-|..-|.+-. .+.+.. -|+.+..+.+.+...+|+|.|.+.+.
T Consensus 1186 ~~~~vyi~p~~~i~~~~~~~w~~~f~~~~----G~~~~~-l~ge~s~~lkl~~~~~vii~tpe~~d 1246 (1674)
T KOG0951|consen 1186 IGRAVYIAPLEEIADEQYRDWEKKFSKLL----GLRIVK-LTGETSLDLKLLQKGQVIISTPEQWD 1246 (1674)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhhcccc----CceEEe-cCCccccchHHhhhcceEEechhHHH
Confidence 3557888998754 34766665532 455444 44555667778889999999987654
No 312
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=48.71 E-value=1.7e+02 Score=34.96 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.3
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001680 324 GILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~ 344 (1032)
-+|.-..|+|||-.+-|+...
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHH
Confidence 477888999999877666643
No 313
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.44 E-value=92 Score=40.24 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=17.1
Q ss_pred eeecCCCCchHHHHHHHHHh
Q 001680 325 ILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 325 ILADemGLGKTiqaIali~~ 344 (1032)
||.=+.|.|||..+-+++..
T Consensus 42 LFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 78999999999988777754
No 314
>PRK06526 transposase; Provisional
Probab=48.35 E-value=58 Score=35.78 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=18.9
Q ss_pred ccceeecCCCCchHHHHHHHHHh
Q 001680 322 LGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 322 ~GGILADemGLGKTiqaIali~~ 344 (1032)
.+-+|.-..|.|||..+.++...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 34688889999999999888754
No 315
>PHA03096 p28-like protein; Provisional
Probab=47.70 E-value=7.2 Score=43.34 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=27.6
Q ss_pred ccccccCCCCC--------CccccccCcccchhhhhhhccCC
Q 001680 744 AICCVCSDPPE--------DSVVTMCGHVFCYQCASEYITGD 777 (1032)
Q Consensus 744 ~~C~ic~d~~~--------~~vvt~CgH~fC~~Ci~~~~~~~ 777 (1032)
.+|.+|++... ..++..|.|.||..|+..|.+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 68999998643 25788999999999999887643
No 316
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=47.35 E-value=3.8 Score=49.90 Aligned_cols=48 Identities=21% Similarity=0.490 Sum_probs=30.0
Q ss_pred ccccccCCCCCCcc---ccccCcccchhhhhhhccCCCCCCCCccccccccccc
Q 001680 744 AICCVCSDPPEDSV---VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 794 (1032)
Q Consensus 744 ~~C~ic~d~~~~~v---vt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~~ 794 (1032)
..|++|.....+-. -..|+|+||..|+..|-. ....|| .|+.+...-.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCP--iDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCP--VDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCc--hhhhhhheee
Confidence 35777766554433 238999999999887633 334566 5776654433
No 317
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=46.84 E-value=2.4e+02 Score=31.48 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=17.0
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001680 324 GILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~ 344 (1032)
.+|.=+.|.|||..+-+++..
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 588999999999888776643
No 318
>PF13173 AAA_14: AAA domain
Probab=46.82 E-value=18 Score=34.88 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=23.8
Q ss_pred cEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCC
Q 001680 538 FRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPI 575 (1032)
Q Consensus 538 ~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi 575 (1032)
.+|||||+|++.+.....-.. ..-....++++||.-.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l-~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFL-VDNGPNIKIILTGSSS 99 (128)
T ss_pred cEEEEehhhhhccHHHHHHHH-HHhccCceEEEEccch
Confidence 479999999997644332222 2212356999999753
No 319
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=46.65 E-value=14 Score=30.32 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=31.2
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhccCCCCCCCCccccccccc
Q 001680 743 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 792 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~ 792 (1032)
...|..|.......++.+|||+.|..|.... +=+-|| .|...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCP--fC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCP--FCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCC--CCCCcccC
Confidence 3457778777777899999999999996531 124566 56655543
No 320
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=46.54 E-value=67 Score=27.37 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=40.1
Q ss_pred eEEEEec-cHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEee
Q 001680 879 KSIVFSQ-WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 935 (1032)
Q Consensus 879 KvIIFSq-f~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlS 935 (1032)
|+.||+. +-.....+...|++.|++|..++-......++++.+.......+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 4566763 55677888899999999999888877767777776666543245555544
No 321
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=44.72 E-value=68 Score=28.95 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=37.5
Q ss_pred eEEEEec------cHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEee
Q 001680 879 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMS 935 (1032)
Q Consensus 879 KvIIFSq------f~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlS 935 (1032)
+|+||+. +-.....+.+.|...|++|..++=....+.++.+.+ ......+.++++.
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~ 70 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE-YSNWPTFPQLYVN 70 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCEEEEC
Confidence 9999987 566788899999999999988875555444444444 3322243444444
No 322
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=15 Score=43.95 Aligned_cols=54 Identities=30% Similarity=0.719 Sum_probs=42.6
Q ss_pred ccccccccCCCCCC-ccccccCcccchhhhhhhccC----C-C--CCCCCcccccccccccc
Q 001680 742 SSAICCVCSDPPED-SVVTMCGHVFCYQCASEYITG----D-D--NMCPAPRCKEQLGADVV 795 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~-~vvt~CgH~fC~~Ci~~~~~~----~-~--~~cp~~~c~~~l~~~~v 795 (1032)
....|.+|.+.... .+...|||.||..|...|++. + . -.||...|...+..+.+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence 45789999888775 777799999999999998863 1 1 36899999988776654
No 323
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.60 E-value=78 Score=39.18 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.8
Q ss_pred eeecCCCCchHHHHHHHHHhh
Q 001680 325 ILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 325 ILADemGLGKTiqaIali~~~ 345 (1032)
|+.-.-|.|||-.|.+++...
T Consensus 39 Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 39 LFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 788999999999988887553
No 324
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=43.22 E-value=1.1e+02 Score=40.26 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=29.6
Q ss_pred ccEEEEecCcccCCcccHHHHHHHhc-ccCcEEEEeccCCCCChH
Q 001680 537 WFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSID 580 (1032)
Q Consensus 537 w~rVIlDEAH~iKN~~S~~~kal~~L-~a~~r~lLTGTPi~N~l~ 580 (1032)
-++||||||-.+... ...+.+... .+..+++|.|=|-|-..-
T Consensus 434 ~~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLVGD~~QLpsV 476 (988)
T PRK13889 434 RDVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQAI 476 (988)
T ss_pred CcEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCCC
Confidence 457999999999643 344444433 567899999988766543
No 325
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=43.10 E-value=1.9e+02 Score=29.32 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=18.8
Q ss_pred ceeecCCCCchHHHHHHHHHhhh
Q 001680 324 GILADDQGLGKTISIIALIQMQR 346 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~~~ 346 (1032)
=|+.-+-|.||+-.|.+++....
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 37788889999999999986643
No 326
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.07 E-value=11 Score=43.65 Aligned_cols=39 Identities=26% Similarity=0.679 Sum_probs=31.0
Q ss_pred ccccccccCCCCCCcc----ccccCcccchhhhhhhccCCCCCCCC
Q 001680 742 SSAICCVCSDPPEDSV----VTMCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~v----vt~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
..+.|++|++.++..+ .+.|.|.|-..|+..|.. ..||+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpv 216 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPV 216 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChh
Confidence 5789999999887653 559999999999998754 45664
No 327
>PRK10824 glutaredoxin-4; Provisional
Probab=42.84 E-value=79 Score=30.29 Aligned_cols=61 Identities=7% Similarity=0.007 Sum_probs=40.3
Q ss_pred eEEEEec------cHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCc-cccEEEeecCCCc
Q 001680 879 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGN 940 (1032)
Q Consensus 879 KvIIFSq------f~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~-~~~VLLlStkagg 940 (1032)
+|+||+. +--....+.+.|...|+.|..++=....+.|. .+.++..-+ -++||+-..-.||
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcC
Confidence 9999997 55678888889999998876665444444444 455554433 4456775555555
No 328
>PRK14974 cell division protein FtsY; Provisional
Probab=42.49 E-value=92 Score=35.74 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=25.8
Q ss_pred ccEEEEecCcccCCcccHHHH---HHHhccc-CcEEEEeccCCCCChHH
Q 001680 537 WFRVVLDEAQTIKNHRTQVAR---ACCSLRA-KRRWCLSGTPIQNSIDD 581 (1032)
Q Consensus 537 w~rVIlDEAH~iKN~~S~~~k---al~~L~a-~~r~lLTGTPi~N~l~D 581 (1032)
.++||||+|+...+....... ..+.+.. ...+++++|--++.+..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~ 271 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ 271 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH
Confidence 578999999998754433222 2222233 34567788764444433
No 329
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=41.97 E-value=95 Score=38.51 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.5
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001680 324 GILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~ 344 (1032)
-+|.-..|+|||-.+-|+...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478889999999877676644
No 330
>PRK14873 primosome assembly protein PriA; Provisional
Probab=41.09 E-value=1e+02 Score=38.83 Aligned_cols=76 Identities=13% Similarity=0.028 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhc-C-ceEEee
Q 001680 830 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-C-IQYRRL 907 (1032)
Q Consensus 830 ~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~-g-i~~~~l 907 (1032)
.|.|-+..++++......+. .+||...-......+.+.|+.. | ..++.+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk-----------------------------~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~l 220 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGR-----------------------------GALVVVPDQRDVDRLEAALRALLGAGDVAVL 220 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCC-----------------------------eEEEEecchhhHHHHHHHHHHHcCCCcEEEE
Confidence 57899999999999988776 8999998888888888888765 4 678999
Q ss_pred CCCCCHHHHHHHHHhhccCccccEEEee
Q 001680 908 DGTMSLPARDRAVKDFNTDREITVMLMS 935 (1032)
Q Consensus 908 ~Gs~s~~eR~~~i~~F~~~~~~~VLLlS 935 (1032)
+++++..+|.+...+...+ +.+|+|.+
T Consensus 221 hS~l~~~~R~~~w~~~~~G-~~~IViGt 247 (665)
T PRK14873 221 SAGLGPADRYRRWLAVLRG-QARVVVGT 247 (665)
T ss_pred CCCCCHHHHHHHHHHHhCC-CCcEEEEc
Confidence 9999999999998888755 67777765
No 331
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.78 E-value=12 Score=32.55 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=30.4
Q ss_pred ccccccCCCCCC--ccccccCcccchhhhhhhccCCCCCCCCcccccc
Q 001680 744 AICCVCSDPPED--SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQ 789 (1032)
Q Consensus 744 ~~C~ic~d~~~~--~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~ 789 (1032)
..|+-|.-|-++ -|...|.|.|-..||.+++....+.--+|.||..
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQT 79 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhe
Confidence 345555544433 3677999999999999998765443333367653
No 332
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=40.73 E-value=16 Score=42.46 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=27.4
Q ss_pred cCcEEEEeccCCCCChHHHHHHHHHHccCCc
Q 001680 564 AKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 594 (1032)
Q Consensus 564 a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~ 594 (1032)
.++..++||||+.|.+.++|++.++|.++.+
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 3567899999999999999999999998653
No 333
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=40.52 E-value=51 Score=40.42 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.2
Q ss_pred ceeecCCCCchHHHHHHHH
Q 001680 324 GILADDQGLGKTISIIALI 342 (1032)
Q Consensus 324 GILADemGLGKTiqaIali 342 (1032)
-|+--|+|.|||-|.=-++
T Consensus 283 LiI~GeTGSGKTTQiPQyL 301 (902)
T KOG0923|consen 283 LIIVGETGSGKTTQIPQYL 301 (902)
T ss_pred EEEEcCCCCCccccccHHH
Confidence 3788999999999875555
No 334
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=39.97 E-value=1.2e+02 Score=39.74 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=55.5
Q ss_pred eEEEEeccHHHHHHHHHHhhh----cCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEE
Q 001680 879 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 953 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~----~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~ 953 (1032)
+++|.+..+..+......+.+ .++.+..++|.++.+++.+.++....+ .+.|++.+.......+.+.....||+
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g-~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG-KIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC-CceEEEchHHHhhCCCCcccCCEEEe
Confidence 899999999888877766554 477888999999999999999988865 66777776555544555655555444
No 335
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=38.79 E-value=84 Score=39.53 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=35.2
Q ss_pred ccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhh
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 346 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~ 346 (1032)
....||.|++...-+...-.. ..++|+=-.+|.|||+..|+.++...
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~---~~~~~iEapTGtGKTl~yL~~al~~~ 59 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKG---GEGLLIEAPTGTGKTLAYLLPALAYA 59 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcC---CCcEEEECCCCccHHHHHHHHHHHHH
Confidence 447999999988777643332 23478888999999999988876643
No 336
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.72 E-value=18 Score=40.55 Aligned_cols=46 Identities=30% Similarity=0.730 Sum_probs=36.5
Q ss_pred cccccccCCCCC------CccccccCcccchhhhhhhccCCCCCCCCccccccc
Q 001680 743 SAICCVCSDPPE------DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 790 (1032)
Q Consensus 743 ~~~C~ic~d~~~------~~vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l 790 (1032)
...|-+|.+... .|-+-.|||.+|..|+..++......| |.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~c--pfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILC--PFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeec--cCCCCcc
Confidence 357888886542 356667999999999999999888889 5788774
No 337
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=37.87 E-value=18 Score=40.12 Aligned_cols=52 Identities=21% Similarity=0.588 Sum_probs=37.4
Q ss_pred ccccccccccCCCCCCc----cccccCcccchhhhhhhccCCCCCCCCcccccccccc
Q 001680 740 ETSSAICCVCSDPPEDS----VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 793 (1032)
Q Consensus 740 e~~~~~C~ic~d~~~~~----vvt~CgH~fC~~Ci~~~~~~~~~~cp~~~c~~~l~~~ 793 (1032)
|+.+.-|+.|.++++-. .--.||--.|..|...+...-...|| .||.....+
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcp--acrr~y~de 66 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCP--ACRRKYDDE 66 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCCh--Hhhhhcccc
Confidence 34556699999987632 33489999999998887766667888 577655443
No 338
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.86 E-value=2.5e+02 Score=35.11 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhh
Q 001680 302 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 302 pyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~ 345 (1032)
++=+..+..++...+- ...-|+.-..|.|||..|..++...
T Consensus 22 e~v~~~L~~ai~~~ri---~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 22 ETVKAILSRAAQENRV---APAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHHHHHHHHHHHcCCC---CceEEEECCCCCCHHHHHHHHHHhc
Confidence 3334445555543221 1234678999999999888887553
No 339
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.82 E-value=71 Score=40.40 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=69.5
Q ss_pred CCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEeccHHHHHHHHHHhhhc-Cce
Q 001680 825 LDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQ 903 (1032)
Q Consensus 825 ~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqf~~~ld~L~~~L~~~-gi~ 903 (1032)
......|.|-+..++++.+....+. .+||...-......+...|+.+ |.+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~Gk-----------------------------qvLvLVPEI~Ltpq~~~rf~~rFg~~ 272 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGK-----------------------------QVLVLVPEIALTPQLLARFKARFGAK 272 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCC-----------------------------EEEEEeccccchHHHHHHHHHHhCCC
Confidence 3445689999999999999999886 8999988877777777777655 788
Q ss_pred EEeeCCCCCHHHHHHHHHhhccCccccEEEeecCC
Q 001680 904 YRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKA 938 (1032)
Q Consensus 904 ~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStka 938 (1032)
+..++.+.+..+|.+.-.+...+ +.+|+|.+-.|
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G-~~~vVIGtRSA 306 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRG-EARVVIGTRSA 306 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcC-CceEEEEechh
Confidence 99999999999999999999865 78888876443
No 340
>PRK08727 hypothetical protein; Validated
Probab=37.75 E-value=1.9e+02 Score=31.21 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=16.2
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001680 324 GILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~ 344 (1032)
-+|.-..|.|||-.+-|+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478888999999777666543
No 341
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.53 E-value=1.7e+02 Score=36.52 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.6
Q ss_pred eeecCCCCchHHHHHHHHHhh
Q 001680 325 ILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 325 ILADemGLGKTiqaIali~~~ 345 (1032)
|+.-.-|.|||-.+.+++...
T Consensus 42 Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 42 LFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 788899999999888887554
No 342
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.97 E-value=1.4e+02 Score=36.08 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhh--ccCCCcccceeecCCCCchHHHHHHHHHhhh
Q 001680 302 KHQKIALAWMLQKE--TRSLHCLGGILADDQGLGKTISIIALIQMQR 346 (1032)
Q Consensus 302 pyQ~~gv~wml~~e--~~~~~~~GGILADemGLGKTiqaIali~~~~ 346 (1032)
|+|+..+..++--. ......+-++|-=.=|=|||..+.+++++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l 47 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYML 47 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHH
Confidence 78988777666321 1111123356666778999998877766543
No 343
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=36.07 E-value=1.7e+02 Score=34.08 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=16.5
Q ss_pred eeecCCCCchHHHHHHHHHh
Q 001680 325 ILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 325 ILADemGLGKTiqaIali~~ 344 (1032)
+|.=++|.|||..++.++..
T Consensus 86 LI~G~pG~GKStLllq~a~~ 105 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAAR 105 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 67889999999988877744
No 344
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.45 E-value=1.5e+02 Score=35.16 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=35.1
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc-c-----cCcEEEEeccCCCCChHHHHHHHHHHcc
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL-R-----AKRRWCLSGTPIQNSIDDLYSYFRFLKY 591 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L-~-----a~~r~lLTGTPi~N~l~DL~sll~fL~p 591 (1032)
.+++||||.+-+....... ...+..+ . .+..++|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 3688999998765432222 2222222 2 2457899999988888888877776654
No 345
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=35.31 E-value=1.1e+02 Score=37.77 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=24.1
Q ss_pred CccccccEEEEecCcccCCcccHHHHHHHhcccCc-EEEEecc
Q 001680 532 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR-RWCLSGT 573 (1032)
Q Consensus 532 L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~-r~lLTGT 573 (1032)
+..-.|++++|||||.||-. +-.+..-....... -+.+|-|
T Consensus 295 iRGQ~fnll~VDEA~FI~~~-a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIKKD-AFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ccCCCCCEEEEehhhccCHH-HHHHhhhhhcccCceEEEEeCC
Confidence 45567999999999999743 22222222234444 4555543
No 346
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=34.77 E-value=27 Score=30.76 Aligned_cols=26 Identities=27% Similarity=0.754 Sum_probs=22.8
Q ss_pred cccccCcccchhhhhhhccCCCCCCCC
Q 001680 757 VVTMCGHVFCYQCASEYITGDDNMCPA 783 (1032)
Q Consensus 757 vvt~CgH~fC~~Ci~~~~~~~~~~cp~ 783 (1032)
+...|.|.|-..||..++.. .+.||.
T Consensus 50 ~wG~CnHaFH~HCI~rWL~T-k~~CPl 75 (88)
T COG5194 50 VWGVCNHAFHDHCIYRWLDT-KGVCPL 75 (88)
T ss_pred EEEecchHHHHHHHHHHHhh-CCCCCC
Confidence 56799999999999999987 778884
No 347
>PRK10689 transcription-repair coupling factor; Provisional
Probab=32.88 E-value=1.8e+02 Score=39.18 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=52.8
Q ss_pred eEEEEeccHHHHHHHHHHhhh----cCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEE
Q 001680 879 KSIVFSQWTRMLDLVENSLNQ----HCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVI 952 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~----~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI 952 (1032)
+++|.+.-+..+..+...+.+ .++.+..+.|..+.+++.++++...++ .+.|++.+.......+++.....||
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-KIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-CCCEEEECHHHHhCCCCHhhCCEEE
Confidence 899999999887777666654 357778899999999999999888754 6778887765444444554444433
No 348
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.52 E-value=18 Score=39.29 Aligned_cols=40 Identities=33% Similarity=0.879 Sum_probs=30.6
Q ss_pred ccccccCCCCCCcccccc----CcccchhhhhhhccC----CCCCCCC
Q 001680 744 AICCVCSDPPEDSVVTMC----GHVFCYQCASEYITG----DDNMCPA 783 (1032)
Q Consensus 744 ~~C~ic~d~~~~~vvt~C----gH~fC~~Ci~~~~~~----~~~~cp~ 783 (1032)
.-|-+|.+.++|...-.| .|-||..|..+.|+. .+-+||.
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 357799999999766666 599999999988763 3447774
No 349
>PRK11054 helD DNA helicase IV; Provisional
Probab=31.30 E-value=71 Score=40.36 Aligned_cols=38 Identities=29% Similarity=0.106 Sum_probs=27.3
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhh
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~ 345 (1032)
+|-+-|+.+|..-. .. -.|+| ..|.|||-++++-+.++
T Consensus 196 ~L~~~Q~~av~~~~----~~----~lV~a-gaGSGKT~vl~~r~ayL 233 (684)
T PRK11054 196 PLNPSQARAVVNGE----DS----LLVLA-GAGSGKTSVLVARAGWL 233 (684)
T ss_pred CCCHHHHHHHhCCC----CC----eEEEE-eCCCCHHHHHHHHHHHH
Confidence 69999999996431 11 13444 47999999999888664
No 350
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=31.12 E-value=41 Score=42.03 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=46.8
Q ss_pred hhccC-ccccEEEeecCCCccccccccCCEEE--------Eec----------CCCCCChHHHHhHhhhccCCcccEEEE
Q 001680 922 DFNTD-REITVMLMSLKAGNLGLNMVAASHVI--------LLD----------LWWNPTTEDQAVDRAHRIGQTRPVTVT 982 (1032)
Q Consensus 922 ~F~~~-~~~~VLLlStkagg~GLNL~~A~~VI--------~~D----------p~WNp~~e~QAigRi~RiGQ~k~V~Vy 982 (1032)
-|..- .+.+..+++|.++.+.|.+...-+|| +|| -|-+.+.-.||.||++|+|-- |-|
T Consensus 622 VF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpG---HcY 698 (1172)
T KOG0926|consen 622 VFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPG---HCY 698 (1172)
T ss_pred hccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCC---cee
Confidence 46553 36788999999999999999999987 232 345677888999999999965 456
Q ss_pred EEE
Q 001680 983 RLT 985 (1032)
Q Consensus 983 rLi 985 (1032)
||+
T Consensus 699 RLY 701 (1172)
T KOG0926|consen 699 RLY 701 (1172)
T ss_pred ehh
Confidence 655
No 351
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=30.79 E-value=2.3e+02 Score=32.46 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=35.0
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhc
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 347 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~ 347 (1032)
.++|+|.....-|+++.+- ..+=++.-..|+|||..|.+++.....
T Consensus 3 ~~yPWl~~~~~~~~~~~r~---~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRH---PHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCc---ceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 4689999999888877332 234467889999999999988866543
No 352
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=30.72 E-value=2.2e+02 Score=37.90 Aligned_cols=42 Identities=31% Similarity=0.294 Sum_probs=30.1
Q ss_pred cEEEEecCcccCCcccHHHHHHHhc-ccCcEEEEeccCCCCChHH
Q 001680 538 FRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDD 581 (1032)
Q Consensus 538 ~rVIlDEAH~iKN~~S~~~kal~~L-~a~~r~lLTGTPi~N~l~D 581 (1032)
++||||||..+... ...+.+..+ ++..+++|.|=|-|-..-+
T Consensus 470 ~vlVIDEAsMv~~~--~m~~Ll~~~~~~garvVLVGD~~QL~~V~ 512 (1102)
T PRK13826 470 TVFVLDEAGMVASR--QMALFVEAVTRAGAKLVLVGDPEQLQPIE 512 (1102)
T ss_pred cEEEEECcccCCHH--HHHHHHHHHHhcCCEEEEECCHHHcCCCC
Confidence 47999999999543 344555555 4678999999987765443
No 353
>PHA00673 acetyltransferase domain containing protein
Probab=30.69 E-value=69 Score=32.36 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=36.0
Q ss_pred ccEEEEecCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChH
Q 001680 537 WFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSID 580 (1032)
Q Consensus 537 w~rVIlDEAH~iKN~~S~~~kal~~L---~a~~r~lLTGTPi~N~l~ 580 (1032)
.+-|.||+.|+=+.-.+++.+.+... ..-++|-+||||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 56699999999888888877776555 456899999999999875
No 354
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=30.32 E-value=3.4e+02 Score=33.79 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhh
Q 001680 301 LKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 301 rpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~ 345 (1032)
.++-+..+..++...+. ..+-||.-.-|+|||..|.+++...
T Consensus 29 q~~~v~~L~~~~~~gri---~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 29 QEAMVRTLTNAFETGRI---AQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred cHHHHHHHHHHHHcCCC---CceEEEECCCCCCHHHHHHHHHHhh
Confidence 34445555555544332 2345778899999999988887553
No 355
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=29.82 E-value=1.9e+02 Score=34.65 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=16.2
Q ss_pred ceeecCCCCchHHHHHHHHHh
Q 001680 324 GILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 324 GILADemGLGKTiqaIali~~ 344 (1032)
-+|.-+.|+|||-.+-|+...
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~ 164 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHA 164 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 467778999999877766644
No 356
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.55 E-value=3.1e+02 Score=32.39 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=30.3
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc---cc-CcEEEEeccCCCCChHHHHHHHHHHcc
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL---RA-KRRWCLSGTPIQNSIDDLYSYFRFLKY 591 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L---~a-~~r~lLTGTPi~N~l~DL~sll~fL~p 591 (1032)
++++||||-+=+.-+..-........+ .. ...++|++|=-.+.+.++...|+-+.+
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~i 379 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHI 379 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCC
Confidence 468899998765433322222222222 22 234667787666666666655555443
No 357
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=29.49 E-value=83 Score=27.57 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=32.4
Q ss_pred ceEEEcChhhH--HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchh
Q 001680 411 GTLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 467 (1032)
Q Consensus 411 ~tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~ 467 (1032)
.+||||+...- .--+..+++.++. ..++......... .....++|+||||...
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~---~~~v~~~~~~~~~-~~~~~~~DlIitT~~l 56 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPE---IEIIDVISLRELE-EVDLDDYDLIISTVPL 56 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCC---ceEEEEEeHHHHh-hCcccCCCEEEEcccc
Confidence 37999997643 4577888888863 3332222211111 1135689999999864
No 358
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=29.16 E-value=1.5e+02 Score=29.81 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=37.5
Q ss_pred eEEEEecc-------HHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhcc
Q 001680 879 KSIVFSQW-------TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 925 (1032)
Q Consensus 879 KvIIFSqf-------~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~ 925 (1032)
||+||+.. -..-..+...|+..++.|..+|=++..+.++++.+....
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~ 54 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGA 54 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC
Confidence 56788776 355778899999999999999999988888887766543
No 359
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=29.07 E-value=64 Score=28.86 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=30.9
Q ss_pred ceEEEcChhhH--HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchh
Q 001680 411 GTLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 467 (1032)
Q Consensus 411 ~tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~ 467 (1032)
++|||||..+- ..-+..++++++.. .+.+.+-+.+...... ...++|+||+|-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 47999997652 24566676666421 3333332222211111 34689999999865
No 360
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.42 E-value=3.8e+02 Score=33.22 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.5
Q ss_pred eeecCCCCchHHHHHHHHHhh
Q 001680 325 ILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 325 ILADemGLGKTiqaIali~~~ 345 (1032)
|+.=.-|.|||..+.+++...
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 788899999999988887553
No 361
>CHL00095 clpC Clp protease ATP binding subunit
Probab=27.97 E-value=1.4e+02 Score=38.66 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=18.5
Q ss_pred cceeecCCCCchHHHHHHHHHh
Q 001680 323 GGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali~~ 344 (1032)
+-||--+.|.|||..+-+++..
T Consensus 202 n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999988877754
No 362
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=27.94 E-value=40 Score=26.98 Aligned_cols=39 Identities=26% Similarity=0.687 Sum_probs=29.4
Q ss_pred cccccCC--CCCCccccccC-----cccchhhhhhhccCC-CCCCCC
Q 001680 745 ICCVCSD--PPEDSVVTMCG-----HVFCYQCASEYITGD-DNMCPA 783 (1032)
Q Consensus 745 ~C~ic~d--~~~~~vvt~Cg-----H~fC~~Ci~~~~~~~-~~~cp~ 783 (1032)
.|.||.+ ..+.+++.+|. |.+-..|+..|+... ...||.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~i 47 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEI 47 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCC
Confidence 4778886 56678899996 788899999998654 346663
No 363
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=26.58 E-value=2.9e+02 Score=31.69 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=34.6
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhc
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 347 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~ 347 (1032)
.++|+|...-..+.+......-+.+=+++-..|+||+..|.++......
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4678888877777655443222234468889999999999999877544
No 364
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=26.41 E-value=36 Score=31.53 Aligned_cols=30 Identities=47% Similarity=0.938 Sum_probs=24.1
Q ss_pred ccccccccCCCCCCc--cccccCcccchhhhh
Q 001680 742 SSAICCVCSDPPEDS--VVTMCGHVFCYQCAS 771 (1032)
Q Consensus 742 ~~~~C~ic~d~~~~~--vvt~CgH~fC~~Ci~ 771 (1032)
....|.+|..+.... ++.+|||++...|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456799999987654 567999999999964
No 365
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=26.00 E-value=2.9e+02 Score=36.06 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=23.5
Q ss_pred HHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 307 ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 307 gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
-+.+|++..... ...+-||-=+.|.|||..+=++...
T Consensus 195 ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 195 EIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred HHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHH
Confidence 356665421111 1235699999999999887666643
No 366
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.83 E-value=2.7e+02 Score=22.61 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=33.1
Q ss_pred EEEEecc-HHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhc
Q 001680 880 SIVFSQW-TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 924 (1032)
Q Consensus 880 vIIFSqf-~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~ 924 (1032)
|+||+.. -.....+.+.|++.|++|..++=+...+.++.+.+...
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g 46 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG 46 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC
Confidence 3556553 35677888899999999998888777667777666654
No 367
>PTZ00062 glutaredoxin; Provisional
Probab=25.83 E-value=2.5e+02 Score=29.75 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=40.9
Q ss_pred eEEEEec------cHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecC
Q 001680 879 KSIVFSQ------WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 937 (1032)
Q Consensus 879 KvIIFSq------f~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStk 937 (1032)
+|+||+. +-.....+...|+..|++|..++=....+.|+. +.++..-+.+..+.+.-+
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~-l~~~sg~~TvPqVfI~G~ 177 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREE-LKVYSNWPTYPQLYVNGE 177 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHH-HHHHhCCCCCCeEEECCE
Confidence 9999988 566778899999999999988887766555555 445654444444444433
No 368
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=25.09 E-value=97 Score=34.34 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhh
Q 001680 300 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 300 LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~ 345 (1032)
|-+-|+.++.+ .. .+. -|.|= .|.|||.+++.-++..
T Consensus 1 l~~eQ~~~i~~-~~---~~~----lV~a~-AGSGKT~~l~~ri~~l 37 (315)
T PF00580_consen 1 LTDEQRRIIRS-TE---GPL----LVNAG-AGSGKTTTLLERIAYL 37 (315)
T ss_dssp S-HHHHHHHHS--S---SEE----EEEE--TTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CC---CCE----EEEeC-CCCCchHHHHHHHHHh
Confidence 45779888888 32 111 23343 7999999988877654
No 369
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=24.79 E-value=2.5e+02 Score=23.82 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=38.6
Q ss_pred eEEEEecc-HHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecC
Q 001680 879 KSIVFSQW-TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 937 (1032)
Q Consensus 879 KvIIFSqf-~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStk 937 (1032)
|+.||+.. -.....+..+|.+.|++|..++=......+.++.+. .....+.++++.-+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~-~g~~~vP~v~i~~~ 60 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEER-TGSSVVPQIFFNEK 60 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHH-hCCCCcCEEEECCE
Confidence 67788764 567888899999999999888776655555544443 33334455555533
No 370
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=24.74 E-value=1.4e+02 Score=33.60 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=50.4
Q ss_pred CceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccC-----ccccEEEee
Q 001680 877 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD-----REITVMLMS 935 (1032)
Q Consensus 877 ~~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~-----~~~~VLLlS 935 (1032)
|++|||.-.-..+-...+..|+..||.+.|+-|+...+.-+++.+.|+++ +.+.|++++
T Consensus 76 pd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 76 PDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred CceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 45999999999999999999999999999999999888888888888632 346777777
No 371
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.48 E-value=40 Score=38.70 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=32.0
Q ss_pred ccccccccCCC---CCCccccccCcccchhhhhhhccCCC--CCCC
Q 001680 742 SSAICCVCSDP---PEDSVVTMCGHVFCYQCASEYITGDD--NMCP 782 (1032)
Q Consensus 742 ~~~~C~ic~d~---~~~~vvt~CgH~fC~~Ci~~~~~~~~--~~cp 782 (1032)
+..+||+--+. -+.|+-..|||+.|.+-+....++.. ..||
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCP 378 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCP 378 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCC
Confidence 45678886543 34589999999999999999888776 5666
No 372
>PRK06893 DNA replication initiation factor; Validated
Probab=24.39 E-value=3.8e+02 Score=28.71 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=15.6
Q ss_pred eeecCCCCchHHHHHHHHHh
Q 001680 325 ILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 325 ILADemGLGKTiqaIali~~ 344 (1032)
+|.-..|.|||-.+-|+...
T Consensus 43 ~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 78889999999776666533
No 373
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.27 E-value=7.8e+02 Score=30.84 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=30.5
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc---ccCcEEEEeccCCCCChHHHHHHHHHHccCCcc
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA 595 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L---~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~ 595 (1032)
.+.+|||||+|.+.. ......++.| ....+++|+.|-...-+.-|-+-...+...++.
T Consensus 121 ~~KVvIIdea~~Ls~--~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls 181 (614)
T PRK14971 121 KYKIYIIDEVHMLSQ--AAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQ 181 (614)
T ss_pred CcEEEEEECcccCCH--HHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCC
Confidence 356899999999943 2222333334 344567777663333233344434444444443
No 374
>PRK05642 DNA replication initiation factor; Validated
Probab=24.22 E-value=3.7e+02 Score=28.95 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=22.5
Q ss_pred cEEEEecCcccCCccc---HHHHHHHhc-ccCcEEEEecc
Q 001680 538 FRVVLDEAQTIKNHRT---QVARACCSL-RAKRRWCLSGT 573 (1032)
Q Consensus 538 ~rVIlDEAH~iKN~~S---~~~kal~~L-~a~~r~lLTGT 573 (1032)
+++|||+.|.+.+... .....+..+ ....++++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 5799999999865432 122333222 34577888887
No 375
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.06 E-value=1.5e+02 Score=26.24 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=28.2
Q ss_pred eEEEcChhhH--HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchh
Q 001680 412 TLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 467 (1032)
Q Consensus 412 tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~ 467 (1032)
+|||||...- ..-...++++++.. .+...+....-.. ....++|++|||-..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~~~~~~---~~~~~~DlIisT~~l 55 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEHTDLGS---AKASSADIIVTSKDL 55 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEEecccc---cCCCCCCEEEEchhh
Confidence 7999997642 22344666666422 2322222221111 125679999999853
No 376
>PRK13556 azoreductase; Provisional
Probab=23.41 E-value=48 Score=35.08 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=26.2
Q ss_pred cccCCEEEEecCCCC---CChHHHHhHhhhccC
Q 001680 945 MVAASHVILLDLWWN---PTTEDQAVDRAHRIG 974 (1032)
Q Consensus 945 L~~A~~VI~~Dp~WN---p~~e~QAigRi~RiG 974 (1032)
|..|+.||+.-|-|| |+...+.|||+.|.|
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g 119 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAG 119 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhcCC
Confidence 556899999999998 678889999999986
No 377
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=23.41 E-value=48 Score=37.23 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=27.1
Q ss_pred CccccccEEEEecCcccC-CcccHHH---HHHHhccc--CcEEEEeccC
Q 001680 532 LAKVGWFRVVLDEAQTIK-NHRTQVA---RACCSLRA--KRRWCLSGTP 574 (1032)
Q Consensus 532 L~~~~w~rVIlDEAH~iK-N~~S~~~---kal~~L~a--~~r~lLTGTP 574 (1032)
|..++...+||||.|++- ....+.. .+++.|.. +--+++.||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 667778899999999973 3333333 33344433 3346677886
No 378
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=23.06 E-value=33 Score=39.24 Aligned_cols=33 Identities=24% Similarity=0.649 Sum_probs=29.2
Q ss_pred cccccccCCCCCCccccccCcccchhhhhhhcc
Q 001680 743 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYIT 775 (1032)
Q Consensus 743 ~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~ 775 (1032)
...|++|..-.++|++.+|+|..|..|....+.
T Consensus 4 elkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 4 ELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 346999999999999999999999999887654
No 379
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.02 E-value=58 Score=38.49 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred cccEEEEecCcccCCcccHHHHHHHhc--------ccCcEEEEeccCCCCChHHHHH
Q 001680 536 GWFRVVLDEAQTIKNHRTQVARACCSL--------RAKRRWCLSGTPIQNSIDDLYS 584 (1032)
Q Consensus 536 ~w~rVIlDEAH~iKN~~S~~~kal~~L--------~a~~r~lLTGTPi~N~l~DL~s 584 (1032)
.|..||+|||| ..|..+..+..| .--+.+++|+|-....+...|+
T Consensus 159 ~y~viiLDeah----ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~ 211 (699)
T KOG0925|consen 159 RYGVIILDEAH----ERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFG 211 (699)
T ss_pred cccEEEechhh----hhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhC
No 380
>PRK07952 DNA replication protein DnaC; Validated
Probab=22.97 E-value=2.4e+02 Score=30.74 Aligned_cols=44 Identities=20% Similarity=0.034 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhhccCC-CcccceeecCCCCchHHHHHHHHHhh
Q 001680 302 KHQKIALAWMLQKETRSL-HCLGGILADDQGLGKTISIIALIQMQ 345 (1032)
Q Consensus 302 pyQ~~gv~wml~~e~~~~-~~~GGILADemGLGKTiqaIali~~~ 345 (1032)
+.|+.++..+.+--..-. ...|-+|.-..|.|||-.+.|++...
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456667666554222111 12356899999999999988888653
No 381
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=22.53 E-value=65 Score=34.96 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=36.3
Q ss_pred cccccccccCCCCCCcc-ccccCcccchhhhhhhccCC-CCCCCCcccc
Q 001680 741 TSSAICCVCSDPPEDSV-VTMCGHVFCYQCASEYITGD-DNMCPAPRCK 787 (1032)
Q Consensus 741 ~~~~~C~ic~d~~~~~v-vt~CgH~fC~~Ci~~~~~~~-~~~cp~~~c~ 787 (1032)
.-+..|++-..+-..|+ ...|||+|-..-+..++... .-.||+..|.
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 34567887766666664 55999999999999998764 3489999997
No 382
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=22.36 E-value=2e+02 Score=35.84 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEE
Q 001680 888 RMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVIL 953 (1032)
Q Consensus 888 ~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~ 953 (1032)
...+-+..+|...|+++..++|+++.++|.+++++-.++ ++.+++.+-.-.-..++++..-.||+
T Consensus 326 QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 326 QHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred HHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEEEEcchhhhcceeecceeEEEE
Confidence 345677788888899999999999999999999999865 77887766444566666666555553
No 383
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=22.24 E-value=5.6e+02 Score=29.26 Aligned_cols=49 Identities=22% Similarity=0.153 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhc
Q 001680 299 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS 347 (1032)
Q Consensus 299 ~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~ 347 (1032)
.++|+|...-.-+.+......-+.+=|+.-..|+||+..|.+++.....
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 3567777766555544333222234467889999999999998876544
No 384
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=21.51 E-value=1.7e+02 Score=24.94 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=30.1
Q ss_pred eEEEcChhhH--HHHHHHHHHhCCCCCCcEEEEEeCCCCCCCccccCCCcEEEEcchh
Q 001680 412 TLVVCPASVL--RQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 467 (1032)
Q Consensus 412 tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~~~l~~~dVVItTY~~ 467 (1032)
+|+|||...- ..-...+++.++.. .+...+....-.. .....++|++|+|...
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~-~~~~~~~~~~~~~--~~~~~~~dliitt~~~ 56 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKEL-GIEVKVEAQGLSE--VIDLADADLIISTVPL 56 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHC-CCeEEEEEcccch--hhhcCCccEEEECCcc
Confidence 6899998743 33456666666532 3322222221111 0456789999999864
No 385
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.43 E-value=2.7e+02 Score=33.45 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=49.9
Q ss_pred eEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCC
Q 001680 879 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAG 939 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkag 939 (1032)
.+||.+.....+.-....|...|+....+.|..+..++..++..... +.+.+++++....
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~-~~~~il~~TPe~l 112 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD-GKIKLLYVTPEKC 112 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHH
Confidence 78999999988887778888899999999999998888888888854 4678888876553
No 386
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.21 E-value=5.3e+02 Score=26.29 Aligned_cols=57 Identities=9% Similarity=0.243 Sum_probs=45.8
Q ss_pred eEEEEeccHHHHHHHHHHhhhc--CceEEe-eCCCCCHHHHHHHHHhhccCccccEEEeec
Q 001680 879 KSIVFSQWTRMLDLVENSLNQH--CIQYRR-LDGTMSLPARDRAVKDFNTDREITVMLMSL 936 (1032)
Q Consensus 879 KvIIFSqf~~~ld~L~~~L~~~--gi~~~~-l~Gs~s~~eR~~~i~~F~~~~~~~VLLlSt 936 (1032)
|+-++-.-...++.+.+.|++. |+.++- .+|.+...+...+++..+.. .+.++++.+
T Consensus 48 ~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~-~pdiv~vgl 107 (171)
T cd06533 48 RVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS-GADILFVGL 107 (171)
T ss_pred eEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc-CCCEEEEEC
Confidence 8889999999999999998887 777665 78888888877788888864 567777664
No 387
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.00 E-value=2.8e+02 Score=32.77 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=16.2
Q ss_pred cceeecCCCCchHHHHHHHH
Q 001680 323 GGILADDQGLGKTISIIALI 342 (1032)
Q Consensus 323 GGILADemGLGKTiqaIali 342 (1032)
..||.=..|.|||..+-++.
T Consensus 38 ~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46888999999998776665
No 388
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=20.75 E-value=53 Score=37.33 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=28.0
Q ss_pred cEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCCh
Q 001680 538 FRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSI 579 (1032)
Q Consensus 538 ~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l 579 (1032)
-.||+||||+ . .-.+.--.+..|-...+..+||.+.|-.+
T Consensus 245 AfVIlDEaQN-t-T~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 245 AFVILDEAQN-T-TVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred eEEEEecccc-c-chhhhceeeeeecCCceEEEEcCcccccC
Confidence 3699999997 2 22233334456678889999999977554
No 389
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=20.69 E-value=4.7e+02 Score=28.46 Aligned_cols=109 Identities=13% Similarity=0.172 Sum_probs=73.7
Q ss_pred eccHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCcc--ccEEEeecCCCccccccccCCEEEEecCCCCCC
Q 001680 884 SQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE--ITVMLMSLKAGNLGLNMVAASHVILLDLWWNPT 961 (1032)
Q Consensus 884 Sqf~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~--~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~ 961 (1032)
-.|.+..+.|...+.. ++.+..++++.+... -.|.+.+. ..++++.-...+.||.|-.-...++.=.+=+-.
T Consensus 94 ~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~D 167 (239)
T PF10593_consen 94 PSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYD 167 (239)
T ss_pred cCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHH
Confidence 3577888999999988 899999997665433 45554432 478888889999999999987777776555555
Q ss_pred hHHHHhHhhhccCCccc-EEEEEEEeCCCHHHHHHHHHHHH
Q 001680 962 TEDQAVDRAHRIGQTRP-VTVTRLTIRDTVEDRILKLQDDK 1001 (1032)
Q Consensus 962 ~e~QAigRi~RiGQ~k~-V~VyrLi~~~TiEe~I~~lq~~K 1001 (1032)
++.| .||- +|=.+. .-+.|+++...+.+....+.+.-
T Consensus 168 TL~Q-mgRw--FGYR~gY~dl~Ri~~~~~l~~~f~~i~~~~ 205 (239)
T PF10593_consen 168 TLMQ-MGRW--FGYRPGYEDLCRIYMPEELYDWFRHIAEAE 205 (239)
T ss_pred HHHH-Hhhc--ccCCcccccceEEecCHHHHHHHHHHHHHH
Confidence 5555 4554 344433 45567777776665544444433
No 390
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=20.66 E-value=1.2e+02 Score=27.04 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=28.4
Q ss_pred ceEEEEeccHHHHHHHHHHhhhcCceEEeeCCCCC
Q 001680 878 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS 912 (1032)
Q Consensus 878 ~KvIIFSqf~~~ld~L~~~L~~~gi~~~~l~Gs~s 912 (1032)
.++|+||..-.........|+..|+.+..++|++.
T Consensus 52 ~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 52 KEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 38899998755677778888999998888999874
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.65 E-value=1.6e+02 Score=31.01 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=32.6
Q ss_pred ccEEEEecCcccCCcccH---HHHHHHhc-ccCcEEEEeccCCCCChHHHHHHHHHHcc
Q 001680 537 WFRVVLDEAQTIKNHRTQ---VARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFLKY 591 (1032)
Q Consensus 537 w~rVIlDEAH~iKN~~S~---~~kal~~L-~a~~r~lLTGTPi~N~l~DL~sll~fL~p 591 (1032)
+++|+||-+-+--+.... ..+.+..+ ..+.-++|++|=-+..+..+......+++
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGI 142 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSST
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccC
Confidence 678999988766443322 22222233 34567889998777666666655555544
No 392
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=20.42 E-value=8.1e+02 Score=31.06 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=25.3
Q ss_pred ccccccEEEEecCcccCCcccHHHHHHHhcc-cCcEEEEeccCC
Q 001680 533 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR-AKRRWCLSGTPI 575 (1032)
Q Consensus 533 ~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~-a~~r~lLTGTPi 575 (1032)
....+++||||||+.|... .....+-.+. ...++++.-+|.
T Consensus 291 RG~~~DLLIVDEAAfI~~~--~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 291 RGQNPDLVIVDEAAFVNPG--ALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred CCCCCCEEEEECcccCCHH--HHHHHHHHHccCCCceEEEeCCC
Confidence 3346789999999999762 2222222232 456666666774
No 393
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=20.39 E-value=1e+03 Score=34.25 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=31.2
Q ss_pred cccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHh
Q 001680 296 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 344 (1032)
Q Consensus 296 ~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~ 344 (1032)
....|-+-|+.++.-++..... =.||-=.-|.|||-++-+++..
T Consensus 426 ~~~~Ls~~Q~~Av~~il~s~~~-----v~ii~G~aGTGKTt~l~~l~~~ 469 (1960)
T TIGR02760 426 SEFALSPSNKDAVSTLFTSTKR-----FIIINGFGGTGSTEIAQLLLHL 469 (1960)
T ss_pred ccCCCCHHHHHHHHHHHhCCCC-----eEEEEECCCCCHHHHHHHHHHH
Confidence 3557999999999988754221 1355556699999877776644
No 394
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=20.21 E-value=3e+02 Score=32.13 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=25.2
Q ss_pred ccEEEEecCcccCCcccHHHHHHHhcc---cCcEEEEeccCCC
Q 001680 537 WFRVVLDEAQTIKNHRTQVARACCSLR---AKRRWCLSGTPIQ 576 (1032)
Q Consensus 537 w~rVIlDEAH~iKN~~S~~~kal~~L~---a~~r~lLTGTPi~ 576 (1032)
++.+++|||..+.. .....++..|+ +..++++|.||-.
T Consensus 102 ~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 47899999999943 23344444454 2235999999954
Done!