Query 001680
Match_columns 1032
No_of_seqs 295 out of 2339
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 17:11:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001680.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_976-980//hhsearch_pdb/001680hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 1.0 1 1 679.9 35.1 498 291-1032 48-570 (644)
2 3mwy_W Chromo domain-containin 1.0 1 1 679.6 31.1 485 291-1031 228-731 (800)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 628.9 35.9 464 292-1032 31-495 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 457.7 28.2 426 296-1007 150-634 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 375.5 30.8 465 297-1006 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 350.0 22.8 255 625-1032 11-266 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 336.0 17.7 379 296-1005 90-471 (472)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 320.3 28.9 476 297-1011 246-771 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 314.3 27.5 472 297-1011 246-771 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 310.0 22.7 475 297-1011 5-530 (556)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=679.88 Aligned_cols=498 Identities=26% Similarity=0.370 Sum_probs=395.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 9988444677267899999999831047--77556432269998258999999986201123310212033211136689
Q 001680 291 LPDGLLSVNLLKHQKIALAWMLQKETRS--LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 368 (1032)
Q Consensus 291 ~P~~~~~~~LrpyQ~~gv~wml~~e~~~--~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1032)
+++. +...|||||++|+.||+...... ....||||||+||||||+|+|++|.......
T Consensus 48 ~~p~-l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~------------------- 107 (644)
T 1z3i_X 48 VDPV-LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS------------------- 107 (644)
T ss_dssp CCHH-HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-------------------
T ss_pred ECHH-HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-------------------
T ss_conf 1856-40035199999999999842335445888759610787429999999999999748-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 88888876743222369889999987666654333688999854999382459999999998679999808999938988
Q 001680 369 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 448 (1032)
Q Consensus 369 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r 448 (1032)
.......+++|||||.+++.||.+||.+|++. .+.++.++++.+
T Consensus 108 ----------------------------------~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~ 151 (644)
T 1z3i_X 108 ----------------------------------PDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSK 151 (644)
T ss_dssp ----------------------------------TTSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCH
T ss_pred ----------------------------------CCCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCH
T ss_conf ----------------------------------66567778579996589988799999997588--725999808988
Q ss_pred CCC---C-------CCCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 889---1-------012787499984012310179999986466642016656776112333321012211113567888
Q 001680 449 TKD---P-------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKK 518 (1032)
Q Consensus 449 ~~~---~-------~~l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~~~ 518 (1032)
... . .....++|+|+||+++.++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--------------------------------------------- 186 (644)
T 1z3i_X 152 DEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--------------------------------------------- 186 (644)
T ss_dssp HHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH---------------------------------------------
T ss_conf 99999999998733777787579963899876578---------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 88777765588887543302899905753489311899999860169589996348879967899888887168852048
Q 001680 519 GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYK 598 (1032)
Q Consensus 519 ~~~~~~~~~~~~~L~~i~w~rVIiDEAH~iKN~~T~~~kav~~L~a~~Rw~LTGTPi~Nsl~DL~sll~fL~~~~~~~~~ 598 (1032)
.|....|++||+||||++||..++.++++..+++.+||+|||||++|++.|||++++||+|++++.+.
T Consensus 187 ------------~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~ 254 (644)
T 1z3i_X 187 ------------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 254 (644)
T ss_dssp ------------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHH
T ss_pred ------------HHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf ------------75048865799878622478045999999855567379984673458899999999861887689999
Q ss_pred HHHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 99977046665684------------568999999999988654037434697743699973899994199999999999
Q 001680 599 SFYSTIKIPISRNS------------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKK 666 (1032)
Q Consensus 599 ~F~~~~~~pi~~~~------------~~~~~~L~~lL~~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~er~~Y~~ 666 (1032)
.|...|..|+.++. ......|+.++.++++||++..+.. .||++.+.++.|+++++|+++|+.
T Consensus 255 ~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~ 329 (644)
T 1z3i_X 255 EFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKL 329 (644)
T ss_dssp HHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 999863261541677677888999999999999999889998710876764-----279836999983799899999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999973087750089999999998752173100122344432201179861199379999996200144423
Q 001680 667 LESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAIC 746 (1032)
Q Consensus 667 l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C 746 (1032)
+....... ...........++..+++||++|+||.++...... ..+ ....
T Consensus 330 ~~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~-----------------------~~~-~~~~- 379 (644)
T 1z3i_X 330 FLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLT-----------------------GEE-GFDG- 379 (644)
T ss_dssp HHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHH-----------------------TCT-TCTT-
T ss_pred HHHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHC-----------------------CCC-HHHH-
T ss_conf 99989999-----98762762145999999999995799988888741-----------------------540-0355-
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34689999951034696220222322102899999986110123554100120002245799999999994344468777
Q 001680 747 CVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILD 826 (1032)
Q Consensus 747 ~iC~d~~~~~vit~CgH~fc~~ci~~~~~~~~~~cp~~~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1032)
++. ..| .. ......
T Consensus 380 ----------------------~~~--------~~~------------------------~~------------~~~~~~ 393 (644)
T 1z3i_X 380 ----------------------ALD--------LFP------------------------QN------------YSTKAV 393 (644)
T ss_dssp ----------------------GGG--------TSC------------------------SS------------CCSSSC
T ss_pred ----------------------HHH--------HCC------------------------CC------------CCCCCC
T ss_conf ----------------------776--------454------------------------21------------110005
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 53310469999999997311036552456520026889876557899989962899945288899999985326962896
Q 001680 827 NEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRR 906 (1032)
Q Consensus 827 ~~~~SsKl~~L~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqft~~ld~L~~~L~~~gi~~~~ 906 (1032)
....|+|+..+..++....... +.|+||||+|+.++++|+..|...|+.+.+
T Consensus 394 ~~~~s~K~~~l~~ll~~~~~~~----------------------------~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 394 EPQLSGKMLVLDYILAMTRTTT----------------------------SDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHC----------------------------CCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHCC----------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7011748999999999986469----------------------------987999980599999999999977997899
Q ss_pred ECCCCCHHHHHHHHHHHCCCCC-CCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 0799897899999996606965-208884137775555446678899956999979277885721013994439999999
Q 001680 907 LDGTMSLPARDRAVKDFNTDRE-ITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLT 985 (1032)
Q Consensus 907 l~Gs~s~~~R~~~I~~F~~~~~-~~VlLlSlkagg~GLNLt~A~~VI~lDp~WNp~~e~QAigRi~RiGQ~k~V~Vyrli 985 (1032)
++|+++.++|+++++.|++++. ..|+|+|+++||+||||+.|++||+||+||||+.+.||+||+||+||+++|+||+|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 83999999999999996399999679998445566784652389899979999813799998840322898726999988
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 58999999999999999999975168889986678899999863239
Q 001680 986 IRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1032 (1032)
Q Consensus 986 ~~dTiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~l~~~dl~~Lf~~ 1032 (1032)
+++|+||+|+++|..|+.+++.+++++.. ....++.+||+.||.+
T Consensus 526 ~~~tiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 526 STGTIEEKILQRQAHKKALSSCVVDEEQD--VERHFSLGELRELFSL 570 (644)
T ss_dssp ETTSHHHHHHHHHHHHHHTSCCCCSCSSS--CCCSSCHHHHHHHTCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHCCCCH--HHCCCCHHHHHHHHCC
T ss_conf 79889999999999999999998568605--4337899999998678
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=679.56 Aligned_cols=485 Identities=27% Similarity=0.437 Sum_probs=391.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 99884446772678999999998310477755643226999825899999998620112331021203321113668988
Q 001680 291 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 370 (1032)
Q Consensus 291 ~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1032)
.|+......|||||++||.||+..... ..||||||+||||||+|+|++|......
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~~---~~~~ILademGlGKT~~ai~~i~~l~~~---------------------- 282 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWSK---GDNGILADEMGLGKTVQTVAFISWLIFA---------------------- 282 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHTT---TCCEEECCCTTSSTTHHHHHHHHHHHHH----------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHH----------------------
T ss_conf 998657997589999999999998513---8998998278753299999999999986----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 88887674322236988999998766665433368899985499938245999999999867999980899993898888
Q 001680 371 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 450 (1032)
Q Consensus 371 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~ 450 (1032)
....+++|||||.+++.||.+||.+|++ .+++++|+|....+
T Consensus 283 -----------------------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r 324 (800)
T 3mwy_W 283 -----------------------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSR 324 (800)
T ss_dssp -----------------------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHH
T ss_pred -----------------------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHH
T ss_conf -----------------------------------0779988999880389999999999779---96499982777778
Q ss_pred CC--------------CCCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 91--------------0127874999840123101799999864666420166567761123333210122111135678
Q 001680 451 DP--------------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 516 (1032)
Q Consensus 451 ~~--------------~~l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~ 516 (1032)
.. .....++|+||||+++.++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~------------------------------------------- 361 (800)
T 3mwy_W 325 DTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA------------------------------------------- 361 (800)
T ss_dssp HHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH-------------------------------------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHH-------------------------------------------
T ss_conf 8988877622630013445667889906999986499-------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 88887777655888875433028999057534893118999998601695899963488799678998888871688520
Q 001680 517 KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 596 (1032)
Q Consensus 517 ~~~~~~~~~~~~~~~L~~i~w~rVIiDEAH~iKN~~T~~~kav~~L~a~~Rw~LTGTPi~Nsl~DL~sll~fL~~~~~~~ 596 (1032)
.|..+.|.+||+||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|..
T Consensus 362 --------------~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~ 427 (800)
T 3mwy_W 362 --------------ELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTI 427 (800)
T ss_dssp --------------HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC--
T ss_pred --------------HHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf --------------983377325641344441471019999999752243897227857799999999999858663674
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999770466656845689999999999886540374346977436999738999941999999999999999999999
Q 001680 597 YKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 676 (1032)
Q Consensus 597 ~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~er~~Y~~l~~~~~~~~~ 676 (1032)
...|..... ..........|+.+++++++||++.++.. .||++.+.++.|++++.|+++|..+.......+.
T Consensus 428 ~~~~~~~~~---~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~ 499 (800)
T 3mwy_W 428 DQEIDFENQ---DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALT 499 (800)
T ss_dssp -------CC---TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---
T ss_pred HHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 344232223---14689999999999757775320876643-----1688279999707999999999999999999986
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99730877500899999999987521731001223444322011798611993799999962001444233468999995
Q 001680 677 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDS 756 (1032)
Q Consensus 677 ~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~iC~d~~~~~ 756 (1032)
.. .......++..+++||++|+||.++........ ......
T Consensus 500 ~~-----~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~--------~~~~~~-------------------------- 540 (800)
T 3mwy_W 500 AG-----AKGGHFSLLNIMNELKKASNHPYLFDNAEERVL--------QKFGDG-------------------------- 540 (800)
T ss_dssp ------------CTHHHHHHHHHHHHHCGGGSSSHHHHHC--------CCC-----------------------------
T ss_pred HC-----CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHH--------HHCCCC--------------------------
T ss_conf 10-----354544699999999987358654235578998--------861566--------------------------
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 10346962202223221028999999861101235541001200022457999999999943444687775331046999
Q 001680 757 VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRT 836 (1032)
Q Consensus 757 vit~CgH~fc~~ci~~~~~~~~~~cp~~~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~ 836 (1032)
.. .+. .........|+|+..
T Consensus 541 ----------------------~~-----~~~---------------------------------~~~~~l~~~s~K~~~ 560 (800)
T 3mwy_W 541 ----------------------KM-----TRE---------------------------------NVLRGLIMSSGKMVL 560 (800)
T ss_dssp -----------------------C-----CSH---------------------------------HHHHHHHHTCHHHHH
T ss_pred ----------------------CC-----CHH---------------------------------HHHHHHHHCCHHHHH
T ss_conf ----------------------55-----577---------------------------------888876642769999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 99999973110365524565200268898765578999899628999452888999999853269628960799897899
Q 001680 837 VLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPAR 916 (1032)
Q Consensus 837 L~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqft~~ld~L~~~L~~~gi~~~~l~Gs~s~~~R 916 (1032)
|.++|..+...+. |+||||||+.++++|+..|...|+.+.+++|+++..+|
T Consensus 561 L~~lL~~~~~~g~-----------------------------kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 561 LDQLLTRLKKDGH-----------------------------RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611 (800)
T ss_dssp HHHHHHHHTTTTC-----------------------------CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHH
T ss_pred HHHHHHHHHHCCC-----------------------------EEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 9999999752798-----------------------------18999635999999999998679978999699999999
Q ss_pred HHHHHHHCCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf 99999660696-52088841377755554466788999569999792778857210139944399999995899999999
Q 001680 917 DRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRIL 995 (1032)
Q Consensus 917 ~~~I~~F~~~~-~~~VlLlSlkagg~GLNLt~A~~VI~lDp~WNp~~e~QAigRi~RiGQ~k~V~Vyrli~~dTiEe~I~ 995 (1032)
+++++.|+.+. ...|||+|+++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|+++||+||+|+
T Consensus 612 ~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~ 691 (800)
T 3mwy_W 612 RISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 691 (800)
T ss_dssp HHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHH
T ss_conf 99999960899982599974544567877601636899468788116899999988558986379999861998999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHC
Q ss_conf 999999999997516888998----667889999986323
Q 001680 996 KLQDDKRKMVASAFGEDQGGG----TASRLTVEDLRYLFM 1031 (1032)
Q Consensus 996 ~lq~~K~~l~~~~~g~~~~~~----~~~~l~~~dl~~Lf~ 1031 (1032)
+++.+|..+...+++.....+ ....++.+||..|+.
T Consensus 692 ~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 692 ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp HHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999988899999703756653211234789999999997
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=628.88 Aligned_cols=464 Identities=33% Similarity=0.530 Sum_probs=400.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 98844467726789999999983104777556432269998258999999986201123310212033211136689888
Q 001680 292 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDD 371 (1032)
Q Consensus 292 P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1032)
|.+ +...|+|||++|+.||...... ..||||||+||+|||+++++++......
T Consensus 31 p~~-~~~~L~~~Q~~~v~~l~~~~~~---~~~~ilad~~GlGKT~~ai~~i~~~~~~----------------------- 83 (500)
T 1z63_A 31 PYN-IKANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKKE----------------------- 83 (500)
T ss_dssp CCS-CSSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHHT-----------------------
T ss_pred CHH-HHCCCHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHC-----------------------
T ss_conf 833-2003369999999999997417---9988998089973899999999988755-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
Q ss_conf 88876743222369889999987666654333688999854999382459999999998679999808999938988889
Q 001680 372 DNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD 451 (1032)
Q Consensus 372 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~ 451 (1032)
.+.+++|||||.+++.||.+||.+|++ .+++.+++|....
T Consensus 84 -----------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~-- 123 (500)
T 1z63_A 84 -----------------------------------NELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK-- 123 (500)
T ss_dssp -----------------------------------TCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS--
T ss_pred -----------------------------------CCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH--
T ss_conf -----------------------------------899978999038999999999999779---9559997267021--
Q ss_pred CCCCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10127874999840123101799999864666420166567761123333210122111135678888877776558888
Q 001680 452 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 531 (1032)
Q Consensus 452 ~~~l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~~~~~~~~~~~~~~~~ 531 (1032)
.....++|+|+||+.+.++. .
T Consensus 124 -~~~~~~~ivi~t~~~l~~~~----------------------------------------------------------~ 144 (500)
T 1z63_A 124 -IKLEDYDIILTTYAVLLRDT----------------------------------------------------------R 144 (500)
T ss_dssp -CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------H
T ss_pred -CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------H
T ss_conf -00357768996379972630----------------------------------------------------------2
Q ss_pred CCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 75433028999057534893118999998601695899963488799678998888871688520489997704666568
Q 001680 532 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRN 611 (1032)
Q Consensus 532 L~~i~w~rVIiDEAH~iKN~~T~~~kav~~L~a~~Rw~LTGTPi~Nsl~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~ 611 (1032)
+....|++||+||||.+||..++.++++..+.+++||+|||||++|++.|||++++||.|+++..+..|...|..|+...
T Consensus 145 l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~ 224 (500)
T 1z63_A 145 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG 224 (500)
T ss_dssp HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 11787287998084101787689999999600471899746777799999999999858775799899999852511146
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 45689999999999886540374346977436999738999941999999999999999999999997308775008999
Q 001680 612 SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANI 691 (1032)
Q Consensus 612 ~~~~~~~L~~lL~~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~i 691 (1032)
.......|+.++.++++||++.+.. ....||++.+..+.+++++.|+.+|..+.......+ ...........+
T Consensus 225 ~~~~~~~l~~~l~~~~lrr~k~~~~---~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~~~ 297 (500)
T 1z63_A 225 DNMAKEELKAIISPFILRRTKYDKA---IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMI 297 (500)
T ss_dssp CHHHHHHHHHHHTTTEECCCTTCHH---HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHEEEECCCCCC---HHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHCCCCHHHH
T ss_conf 6889999999976674550255424---112299975899981899999999999999999999----864232106799
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999987521731001223444322011798611993799999962001444233468999995103469622022232
Q 001680 692 LLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCAS 771 (1032)
Q Consensus 692 L~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~CgH~fc~~ci~ 771 (1032)
+..+++||++|+||.++....
T Consensus 298 ~~~l~~lr~~~~~p~l~~~~~----------------------------------------------------------- 318 (500)
T 1z63_A 298 LSTLLKLKQIVDHPALLKGGE----------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHTTCTHHHHCSC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHCCHHHHCCCC-----------------------------------------------------------
T ss_conf 999999998817998843852-----------------------------------------------------------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 21028999999861101235541001200022457999999999943444687775331046999999999731103655
Q 001680 772 EYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKC 851 (1032)
Q Consensus 772 ~~~~~~~~~cp~~~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~L~elL~~~~~~~~~~ 851 (1032)
.....++|+..+.+++.+....+.
T Consensus 319 ------------------------------------------------------~~~~~s~K~~~l~~~l~~~~~~~~-- 342 (500)
T 1z63_A 319 ------------------------------------------------------QSVRRSGKMIRTMEIIEEALDEGD-- 342 (500)
T ss_dssp ------------------------------------------------------CCSTTCHHHHHHHHHHHHHHTTTC--
T ss_pred ------------------------------------------------------CHHHCCHHHHHHHHHHHHHHCCCC--
T ss_conf ------------------------------------------------------011115529999999999872688--
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 2456520026889876557899989962899945288899999985326-962896079989789999999660696520
Q 001680 852 SIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREIT 930 (1032)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqft~~ld~L~~~L~~~-gi~~~~l~Gs~s~~~R~~~I~~F~~~~~~~ 930 (1032)
|+|||++|+.+++.++..|... |+.+..++|+++.++|+++++.|++++++.
T Consensus 343 ---------------------------k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~ 395 (500)
T 1z63_A 343 ---------------------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVK 395 (500)
T ss_dssp ---------------------------CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCC
T ss_pred ---------------------------CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCC
T ss_conf ---------------------------68999721889999999998853887699979999999999999960899987
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88841377755554466788999569999792778857210139944399999995899999999999999999997516
Q 001680 931 VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFG 1010 (1032)
Q Consensus 931 VlLlSlkagg~GLNLt~A~~VI~lDp~WNp~~e~QAigRi~RiGQ~k~V~Vyrli~~dTiEe~I~~lq~~K~~l~~~~~g 1010 (1032)
|+|+|++++++|+||+.|++||++|+||||..+.||+||++|+||+++|+||+|++++|+||+|+++++.|+.+++.+++
T Consensus 396 vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~ 475 (500)
T 1z63_A 396 FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIIS 475 (500)
T ss_dssp CCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGG
T ss_pred EEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79995333557774455888999589989545899999888738987069999774898999999999999999999860
Q ss_pred CCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 8889986678899999863239
Q 001680 1011 EDQGGGTASRLTVEDLRYLFMV 1032 (1032)
Q Consensus 1011 ~~~~~~~~~~l~~~dl~~Lf~~ 1032 (1032)
++. .....++.+||+.||++
T Consensus 476 ~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 476 SGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp STT--GGGGSSCHHHHHHHHSC
T ss_pred CCC--CHHCCCCHHHHHHHHCC
T ss_conf 685--02115999999999646
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=457.71 Aligned_cols=426 Identities=19% Similarity=0.239 Sum_probs=311.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44677267899999999831047775564322699982589999999862011233102120332111366898888887
Q 001680 296 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 375 (1032)
Q Consensus 296 ~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1032)
..+.|+|||+.++.|++... ..|+||||+||+|||+++++++......
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------------------------- 197 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLLS--------------------------- 197 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHHH---------------------------
T ss_conf 89997099999999999705-----8988987899975999999999999981---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC----CC
Q ss_conf 67432223698899999876666543336889998549993824599999999986799998089999389888----89
Q 001680 376 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT----KD 451 (1032)
Q Consensus 376 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~----~~ 451 (1032)
.+.+++|||||.+|+.||..|+.+++. +.+.++++.... ..
T Consensus 198 -------------------------------g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~~ 242 (968)
T 3dmq_A 198 -------------------------------GAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHDA 242 (968)
T ss_dssp -------------------------------SSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHTT
T ss_pred -------------------------------CCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHHC
T ss_conf -------------------------------899829999578889999999999869----987998062055543200
Q ss_pred CCCCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10127874999840123101799999864666420166567761123333210122111135678888877776558888
Q 001680 452 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 531 (1032)
Q Consensus 452 ~~~l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~~~~~~~~~~~~~~~~ 531 (1032)
...+..++|||+||+.+.+.... ...
T Consensus 243 ~~~~~~~dIvI~T~~~L~~~~~~------------------------------------------------------~~~ 268 (968)
T 3dmq_A 243 YNPFDTEQLVICSLDFARRSKQR------------------------------------------------------LEH 268 (968)
T ss_dssp CSSSTTCSEEEECHHHHHTSTTT------------------------------------------------------THH
T ss_pred CCCCCCCCEEEECHHHHHHCHHH------------------------------------------------------HHH
T ss_conf 36445689899768998648788------------------------------------------------------887
Q ss_pred CCCCCCCEEEEECCCCCCCCCCHH---HHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 754330289990575348931189---9999860--16958999634887996789988888716885204899977046
Q 001680 532 LAKVGWFRVVLDEAQTIKNHRTQV---ARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI 606 (1032)
Q Consensus 532 L~~i~w~rVIiDEAH~iKN~~T~~---~kav~~L--~a~~Rw~LTGTPi~Nsl~DL~sll~fL~~~~~~~~~~F~~~~~~ 606 (1032)
+....|++||+||||+++|..+.. ++++..+ +++++|+|||||++|++.|+|++++||.|+.|..+..|...+..
T Consensus 269 l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~ 348 (968)
T 3dmq_A 269 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKN 348 (968)
T ss_dssp HHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHH
T ss_pred HHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 64158778974446762588875429999999986257858999768766987999999982593011898999999985
Q ss_pred CC---------------CC------------------------CCHHHHHHHHHHHHHH---------HHHHCCCCCCCC
Q ss_conf 66---------------56------------------------8456899999999998---------865403743469
Q 001680 607 PI---------------SR------------------------NSLHGYKKLQAVLRAI---------MLRRTKGTFIDG 638 (1032)
Q Consensus 607 pi---------------~~------------------------~~~~~~~~L~~lL~~~---------~LRRtk~~v~~g 638 (1032)
.. .. ...........++..+ ++|+++..+
T Consensus 349 ~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i--- 425 (968)
T 3dmq_A 349 YCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV--- 425 (968)
T ss_dssp HHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC---
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---
T ss_conf 78899999987426789988999999884203367887503622233379999999999986173326563226554---
Q ss_pred CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 77436999738999941999999999999999999999997308775008999999999875217310012234443220
Q 001680 639 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGK 718 (1032)
Q Consensus 639 ~pii~LPpk~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~ 718 (1032)
..+|++....+.+++++.++..|...... ........ ....+.+|..+..
T Consensus 426 ---~~~p~r~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~----------~~~~~l~pe~~~~-------- 475 (968)
T 3dmq_A 426 ---KGFPKRELHTIKLPLPTQYQTAIKVSGIM---------GARKSAED----------RARDMLYPERIYQ-------- 475 (968)
T ss_dssp ---CCCCCCCCCEEEECCCHHHHHHHHHHHHT---------TCCSSGGG----------GTHHHHCSGGGTT--------
T ss_pred ---CCCCHHHEEEEECCCCHHHHHHHHHHHHH---------HHHHHHHH----------HHHHHCCHHHHHH--------
T ss_conf ---55671115752368999999999987543---------02126677----------7764108598998--------
Q ss_pred CHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11798611993799999962001444233468999995103469622022232210289999998611012355410012
Q 001680 719 ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK 798 (1032)
Q Consensus 719 ~~~e~~~~l~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~CgH~fc~~ci~~~~~~~~~~cp~~~cr~~l~~~~v~~~ 798 (1032)
T Consensus 476 -------------------------------------------------------------------------------- 475 (968)
T 3dmq_A 476 -------------------------------------------------------------------------------- 475 (968)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00022457999999999943444687775331046999999999731103655245652002688987655789998996
Q 001680 799 TTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPI 878 (1032)
Q Consensus 799 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~L~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1032)
.... ........+.|+..+.+++... . +.
T Consensus 476 -----~l~~---------------~~~~~~~~~~K~~~L~~ll~~~--~-----------------------------~~ 504 (968)
T 3dmq_A 476 -----EFEG---------------DNATWWNFDPRVEWLMGYLTSH--R-----------------------------SQ 504 (968)
T ss_dssp -----TTTS---------------SSCCTTTTSHHHHHHHHHHHHT--S-----------------------------SS
T ss_pred -----HHHH---------------HHHCCCCCCHHHHHHHHHHHHC--C-----------------------------CC
T ss_conf -----7643---------------3313568567999999999837--9-----------------------------99
Q ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECC
Q ss_conf 289994528889999998532-6962896079989789999999660696-52088841377755554466788999569
Q 001680 879 KSIVFSQWTRMLDLVENSLNQ-HCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDL 956 (1032)
Q Consensus 879 KvIIFSqft~~ld~L~~~L~~-~gi~~~~l~Gs~s~~~R~~~I~~F~~~~-~~~VlLlSlkagg~GLNLt~A~~VI~lDp 956 (1032)
|+||||++..+++.+...|.. .|+.+..++|+|+..+|+++++.|+++. .+.||+ +++++++|+|++.|++||++|+
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~ 583 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDL 583 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSC
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEE-ECCHHHCCCCCCCCCEEEEECC
T ss_conf 789996959999999999998749838998499999999999999747997630898-5334316888556767999569
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999792778857210139944399999995899999999999999999997
Q 001680 957 WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVAS 1007 (1032)
Q Consensus 957 ~WNp~~e~QAigRi~RiGQ~k~V~Vyrli~~dTiEe~I~~lq~~K~~l~~~ 1007 (1032)
+|||..+.|++||++|+||++.|+||+++.++|+|++|++.+.+|.+++..
T Consensus 584 p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~ 634 (968)
T 3dmq_A 584 PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEH 634 (968)
T ss_dssp CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSS
T ss_pred CCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEC
T ss_conf 998789998701143079985089998057771999999999867876353
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=375.50 Aligned_cols=465 Identities=16% Similarity=0.170 Sum_probs=288.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46772678999999998310477755643226999825899999998620112331021203321113668988888876
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
..+|+|||++++.|++.. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC-CC
Q ss_conf 743222369889999987666654333688999854999382-4599999999986799998089999389888891-01
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 454 (1032)
Q Consensus 377 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~-~~ 454 (1032)
.+.+++|||||. +|+.||.+|+.+++... ..++..++|....... ..
T Consensus 50 ------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 50 ------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp ------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHH
T ss_pred ------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCCC-HHHEEEEECCCCHHHHHHH
T ss_conf ------------------------------479859999788899999999999874756-1116876077533556653
Q ss_pred CCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 27874999840123101799999864666420166567761123333210122111135678888877776558888754
Q 001680 455 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 534 (1032)
Q Consensus 455 l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~~~~~~~~~~~~~~~~L~~ 534 (1032)
+..++|+|+||+.+...... ..+..
T Consensus 99 ~~~~~ivv~T~~~l~~~~~~-------------------------------------------------------~~~~~ 123 (494)
T 1wp9_A 99 WARAKVIVATPQTIENDLLA-------------------------------------------------------GRISL 123 (494)
T ss_dssp HHHCSEEEECHHHHHHHHHT-------------------------------------------------------TSCCT
T ss_pred CCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCCH
T ss_conf 35798999639999999860-------------------------------------------------------87156
Q ss_pred CCCCEEEEECCCCCCCCCCHHH--HHH-HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHH---HHHCCCC
Q ss_conf 3302899905753489311899--999-860169589996348879967899888887168852048999---7704666
Q 001680 535 VGWFRVVLDEAQTIKNHRTQVA--RAC-CSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFY---STIKIPI 608 (1032)
Q Consensus 535 i~w~rVIiDEAH~iKN~~T~~~--kav-~~L~a~~Rw~LTGTPi~Nsl~DL~sll~fL~~~~~~~~~~F~---~~~~~pi 608 (1032)
..|.+||+||||.+++...... +.+ ...+..++|+|||||. |+..+++.++.++..........+. ..+..+.
T Consensus 124 ~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 202 (494)
T 1wp9_A 124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGI 202 (494)
T ss_dssp TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCC
T ss_pred HHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCC
T ss_conf 54108999787566888819999999973288776999956998-88578999998507000502678758788752787
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -----568456899999999998865403743469774369997389999419999999999999999999999973087
Q 001680 609 -----SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGT 683 (1032)
Q Consensus 609 -----~~~~~~~~~~L~~lL~~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~ 683 (1032)
..........+...+..++.++.+.....+ .+++.. ..++..+.. .+. ..+......+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~---~~~----~~~~~~~~~~~ 266 (494)
T 1wp9_A 203 RFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVL---RAG----QIINEEMAKGN 266 (494)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHH---HHH----HHHHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-----CCCCHHHHH---HHH----HHHHHHHHCCC
T ss_conf 42689568858899999989899999999999735----565457-----773355789---999----99998753356
Q ss_pred -CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -7500899999999987521731001223444322011798611993799999962001444233468999995103469
Q 001680 684 -VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCG 762 (1032)
Q Consensus 684 -~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~Cg 762 (1032)
..-.....+..+..+..+..... .........++..+... | ...... ...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~---~---~~~~~~----~~~ 317 (494)
T 1wp9_A 267 HDLRGLLLYHAMALKLHHAIELLE-------------------TQGLSALRAYIKKLYEE---A---KAGSTK----ASK 317 (494)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHH-------------------HTCHHHHHHHHHHHHHH---H---HTTCCH----HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-------------------HHCHHHHHHHHHHHHHH---H---CCCCCH----HHH
T ss_conf 311347999988888999999998-------------------52579999999999875---2---232114----556
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 62202223221028999999861101235541001200022457999999999943444687775331046999999999
Q 001680 763 HVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILH 842 (1032)
Q Consensus 763 H~fc~~ci~~~~~~~~~~cp~~~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~L~elL~ 842 (1032)
..++..-+.+... .|.. .......++|+..+.++|.
T Consensus 318 ~~~~~~~~~~~~~---------~~~~-----------------------------------~~~~~~~~~k~~~l~~~l~ 353 (494)
T 1wp9_A 318 EIFSDKRMKKAIS---------LLVQ-----------------------------------AKEIGLDHPKMDKLKEIIR 353 (494)
T ss_dssp HHHTSHHHHHHHH---------HHHH-----------------------------------HHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHH-----------------------------------HHHCCCCCHHHHHHHHHHH
T ss_conf 6665078898999---------9998-----------------------------------8745899869999999999
Q ss_pred HHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECC--------CCCHH
Q ss_conf 7311036552456520026889876557899989962899945288899999985326962896079--------98978
Q 001680 843 TQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG--------TMSLP 914 (1032)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqft~~ld~L~~~L~~~gi~~~~l~G--------s~s~~ 914 (1032)
....... +.|+|||+++..+++.+...|...|+.+..++| +++..
T Consensus 354 ~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (494)
T 1wp9_A 354 EQLQRKQ---------------------------NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQR 406 (494)
T ss_dssp HHHHHCT---------------------------TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CC
T ss_pred HHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 9843689---------------------------9759999766899999999999759980799656654444458999
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHH
Q ss_conf 99999996606965208884137775555446678899956999979277885721013994439999999589999999
Q 001680 915 ARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRI 994 (1032)
Q Consensus 915 ~R~~~I~~F~~~~~~~VlLlSlkagg~GLNLt~A~~VI~lDp~WNp~~e~QAigRi~RiGQ~k~V~Vyrli~~dTiEe~I 994 (1032)
+|+++++.|+++ .+.||+ +++++++|+||+.|++||++|++|||..+.|++||++|.|| +.+|+|+.++|+||++
T Consensus 407 ~r~~~~~~F~~~-~~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~ 481 (494)
T 1wp9_A 407 EQKLILDEFARG-EFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAY 481 (494)
T ss_dssp HHHHHHHHHHHT-SCSEEE-ECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHHCC-CCEEEE-ECCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHH
T ss_conf 999999998669-946999-88841258871437989992898878999998752257788---4699999569878999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 001680 995 LKLQDDKRKMVA 1006 (1032)
Q Consensus 995 ~~lq~~K~~l~~ 1006 (1032)
+.++..|.+++.
T Consensus 482 ~~~~~~k~~~~~ 493 (494)
T 1wp9_A 482 YWSSRQKEKIMQ 493 (494)
T ss_dssp HHHCC-------
T ss_pred HHHHHHHHHHHC
T ss_conf 998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=350.00 Aligned_cols=255 Identities=29% Similarity=0.448 Sum_probs=222.3
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 98865403743469774369997389999419999999999999999999999973087750089999999998752173
Q 001680 625 AIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH 704 (1032)
Q Consensus 625 ~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~h 704 (1032)
.--+||+|.++.. +|||+.+.++.|+|+++|+++|+.+.......+ ..........+++..+++||++|+|
T Consensus 11 ~~~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 11 SSGLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5564164877875-----199977999981899999999999999999999----7403521288999999999998489
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 10012234443220117986119937999999620014442334689999951034696220222322102899999986
Q 001680 705 PLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAP 784 (1032)
Q Consensus 705 P~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~CgH~fc~~ci~~~~~~~~~~cp~~ 784 (1032)
|.++....
T Consensus 82 P~l~~~~~------------------------------------------------------------------------ 89 (271)
T 1z5z_A 82 PALLKGGE------------------------------------------------------------------------ 89 (271)
T ss_dssp THHHHCSC------------------------------------------------------------------------
T ss_pred HHHHCCCC------------------------------------------------------------------------
T ss_conf 98846873------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
Q ss_conf 11012355410012000224579999999999434446877753310469999999997311036552456520026889
Q 001680 785 RCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNG 864 (1032)
Q Consensus 785 ~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~L~elL~~~~~~~~~~~~~~~~~~~~~~~ 864 (1032)
.....|+|+..|.++|......+.
T Consensus 90 -----------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~--------------- 113 (271)
T 1z5z_A 90 -----------------------------------------QSVRRSGKMIRTMEIIEEALDEGD--------------- 113 (271)
T ss_dssp -----------------------------------------CCSTTCHHHHHHHHHHHHHHHTTC---------------
T ss_pred -----------------------------------------CCCCCCHHHHHHHHHHHHHHHCCC---------------
T ss_conf -----------------------------------------223468999999999999986799---------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 876557899989962899945288899999985326-9628960799897899999996606965208884137775555
Q 001680 865 SSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGL 943 (1032)
Q Consensus 865 ~~~~~~~~~~~~~~KvIIFSqft~~ld~L~~~L~~~-gi~~~~l~Gs~s~~~R~~~I~~F~~~~~~~VlLlSlkagg~GL 943 (1032)
|+||||+|+.+++.|+..|... |+.+.+++|+++..+|+++++.|++++++.|+|+|+++||+||
T Consensus 114 --------------kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Gl 179 (271)
T 1z5z_A 114 --------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGI 179 (271)
T ss_dssp --------------CEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCC
T ss_pred --------------EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCC
T ss_conf --------------699995519999999999987339847999799999999999998328999978997223515886
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 44667889995699997927788572101399443999999958999999999999999999975168889986678899
Q 001680 944 NMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTV 1023 (1032)
Q Consensus 944 NLt~A~~VI~lDp~WNp~~e~QAigRi~RiGQ~k~V~Vyrli~~dTiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~l~~ 1023 (1032)
||+.|++||+||+||||..+.||+||+||+||+++|+||+|++++|+||+|++++..|..+++.+++++. .....++.
T Consensus 180 nl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~ 257 (271)
T 1z5z_A 180 NLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELST 257 (271)
T ss_dssp CCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTT--HHHHTSCH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--HHHHCCCH
T ss_conf 7644899999799998518999998523238998569999854988999999999999999999971670--54323899
Q ss_pred HHHHHHHCC
Q ss_conf 999863239
Q 001680 1024 EDLRYLFMV 1032 (1032)
Q Consensus 1024 ~dl~~Lf~~ 1032 (1032)
+||+.||.+
T Consensus 258 ~~l~~l~~~ 266 (271)
T 1z5z_A 258 EELRKVIEL 266 (271)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHCC
T ss_conf 999999655
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=335.97 Aligned_cols=379 Identities=18% Similarity=0.155 Sum_probs=261.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44677267899999999831047775564322699982589999999862011233102120332111366898888887
Q 001680 296 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 375 (1032)
Q Consensus 296 ~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1032)
...+|+|||.+++.+++.. ..+||+++||+|||++++.++...
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------ 132 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------ 132 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC------------------------------
T ss_conf 8998688999999999965-------987999699998899999999980------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCE-EEEEECCCCCCCCC
Q ss_conf 6743222369889999987666654333688999854999382-459999999998679999808-99993898888910
Q 001680 376 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALS-VLIYHGGSRTKDPV 453 (1032)
Q Consensus 376 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~-vlv~~G~~r~~~~~ 453 (1032)
.+.+|||||. +|+.||.+++.+| .+. +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHHC-----CCCCEEEECCCCCC----
T ss_conf ---------------------------------999999987999999999999967-----99636998787677----
Q ss_pred CCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12787499984012310179999986466642016656776112333321012211113567888887777655888875
Q 001680 454 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 533 (1032)
Q Consensus 454 ~l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~~~~~~~~~~~~~~~~L~ 533 (1032)
..+|+|+||+.+..... ..
T Consensus 171 ---~~~Ivv~T~~~l~~~~~----------------------------------------------------------~~ 189 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE----------------------------------------------------------KL 189 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH----------------------------------------------------------HH
T ss_pred ---CCCEEEEECHHHHHHHH----------------------------------------------------------HH
T ss_conf ---67789997689997799----------------------------------------------------------73
Q ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf 43302899905753489311899999860169589996348879967899888887168852048999770466656845
Q 001680 534 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL 613 (1032)
Q Consensus 534 ~i~w~rVIiDEAH~iKN~~T~~~kav~~L~a~~Rw~LTGTPi~Nsl~DL~sll~fL~~~~~~~~~~F~~~~~~pi~~~~~ 613 (1032)
.-.|..||+||+|.+.+.... ..+..+.+.++++|||||..+.-.+. .+..+
T Consensus 190 ~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~-~l~~~------------------------- 241 (472)
T 2fwr_A 190 GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE-ILKEV------------------------- 241 (472)
T ss_dssp TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG-SHHHH-------------------------
T ss_pred CCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHHH-HHHHH-------------------------
T ss_conf 687778999897578976899--99973577818999327668897789-99997-------------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 68999999999988654037434697743699973899994199999999999999999999999730877500899999
Q 001680 614 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 693 (1032)
Q Consensus 614 ~~~~~L~~lL~~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~ 693 (1032)
+.+.+.++...++.. ..+++.....+.+++++.++..|..+...... +.....
T Consensus 242 ---------~~~~~~~~~~~~l~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~---------- 294 (472)
T 2fwr_A 242 ---------VGGKVFELFPDSLAG----KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQ----FLRARG---------- 294 (472)
T ss_dssp ---------TCCEEEECCHHHHTS----CCCCSEEECCEEECCCHHHHHHTTTTTHHHHS----CSSSCC----------
T ss_pred ---------HCCEEEECCHHHHHC----CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----HHHHCC----------
T ss_conf ---------298576547898706----76788189999858998999999999999999----998647----------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99998752173100122344432201179861199379999996200144423346899999510346962202223221
Q 001680 694 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEY 773 (1032)
Q Consensus 694 ~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~CgH~fc~~ci~~~ 773 (1032)
+..... ... ...+..+
T Consensus 295 -------------~~~~~~-~~~--------------------------------------~~~~~~~------------ 310 (472)
T 2fwr_A 295 -------------ITLRRA-EDF--------------------------------------NKIVMAS------------ 310 (472)
T ss_dssp -------------CTTTCC-SSS--------------------------------------TTTTTTT------------
T ss_pred -------------CCCCCH-HHH--------------------------------------HHHHHHH------------
T ss_conf -------------542244-668--------------------------------------9999872------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 02899999986110123554100120002245799999999994344468777533104699999999973110365524
Q 001680 774 ITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSI 853 (1032)
Q Consensus 774 ~~~~~~~cp~~~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~L~elL~~~~~~~~~~~~ 853 (1032)
..+ +.++..+.... .. .......+.|+..+.+++... .+
T Consensus 311 -----~~~--~~~~~~~~~~~-----~~----------------------~~~~~~~~~k~~~l~~~l~~~--~~----- 349 (472)
T 2fwr_A 311 -----GYD--ERAYEALRAWE-----EA----------------------RRIAFNSKNKIRKLREILERH--RK----- 349 (472)
T ss_dssp -----CCS--SSSSTTTHHHH-----HH----------------------HHHHHSCSHHHHHHHHHHHHT--SS-----
T ss_pred -----CCC--HHHHHHHHHHH-----HH----------------------HHHHHCCHHHHHHHHHHHHHC--CC-----
T ss_conf -----369--88999999999-----99----------------------997633738999999999857--89-----
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 56520026889876557899989962899945288899999985326962896079989789999999660696520888
Q 001680 854 VEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVML 933 (1032)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqft~~ld~L~~~L~~~gi~~~~l~Gs~s~~~R~~~I~~F~~~~~~~VlL 933 (1032)
.|+|||+++..+++.+...|. +..++|+++..+|+++++.|+++ .+.|++
T Consensus 350 ------------------------~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g-~~~vLv 399 (472)
T 2fwr_A 350 ------------------------DKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTG-RFRAIV 399 (472)
T ss_dssp ------------------------SCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHS-SCSBCB
T ss_pred ------------------------CCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHCC-CCCEEE
T ss_conf ------------------------838999797999999999748-----65562899999999999998679-988899
Q ss_pred EECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 4137775555446678899956999979277885721013994-43999999958999999999999999999
Q 001680 934 MSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQT-RPVTVTRLTIRDTVEDRILKLQDDKRKMV 1005 (1032)
Q Consensus 934 lSlkagg~GLNLt~A~~VI~lDp~WNp~~e~QAigRi~RiGQ~-k~V~Vyrli~~dTiEe~I~~lq~~K~~l~ 1005 (1032)
+++++++|+|++.+++||++|++||+..+.|++||++|.||. +.|.||.|+.++|+|+++.++++.|++++
T Consensus 400 -~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 400 -SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp -CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred -ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf -857051484620286899989999888999987631577799853999999819985379999998765058
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=320.34 Aligned_cols=476 Identities=14% Similarity=0.158 Sum_probs=264.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46772678999999998310477755643226999825899999998620112331021203321113668988888876
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
...|+|||.+++.|++.. ..+|++++||+|||++++..+......
T Consensus 246 ~~~~r~~Q~~ai~~il~g-------~~~ll~a~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (936)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHTTTTT----------------------------
T ss_pred CCCCCHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 898779999999999809-------989999699845999999999999973----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHH-HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC--CC
Q ss_conf 7432223698899999876666543336889998549993824-59999999998679999808999938988889--10
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PV 453 (1032)
Q Consensus 377 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~--~~ 453 (1032)
......+++|||||.. |+.||.+++.++++.. .+++.+++|+..... ..
T Consensus 291 ---------------------------~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~ 342 (936)
T 4a2w_A 291 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (936)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ---------------------------655689859999698999999999999971216-9559999799631257897
Q ss_pred CCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1278749998401231017999998646664201665677611233332101221111356788888777765588887-
Q 001680 454 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 532 (1032)
Q Consensus 454 ~l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~~~~~~~~~~~~~~~~L- 532 (1032)
....++|+|+|++.+...... ..+
T Consensus 343 ~~~~~~IvI~Tp~~L~~~l~~-------------------------------------------------------~~~~ 367 (936)
T 4a2w_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (936)
T ss_dssp HHHHCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HCCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCC
T ss_conf 416999999449999999871-------------------------------------------------------7645
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHCC--------CCCEEEEECCCCCCCHHHHHHHH-------HHHCCCCC---
Q ss_conf 5433028999057534893118999998601--------69589996348879967899888-------88716885---
Q 001680 533 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR--------AKRRWCLSGTPIQNSIDDLYSYF-------RFLKYDPY--- 594 (1032)
Q Consensus 533 ~~i~w~rVIiDEAH~iKN~~T~~~kav~~L~--------a~~Rw~LTGTPi~Nsl~DL~sll-------~fL~~~~~--- 594 (1032)
..-.|.+||+||||.+.+..+........+. ..++++|||||.+++..++...+ ..|....+
T Consensus 368 ~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~ 447 (936)
T 4a2w_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 447 (936)
T ss_dssp CGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 33678799998731359986699999999998631378867399863885545402089999999999985497155346
Q ss_pred -CHHHHHHHHHCCCCCCC-------CHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf -20489997704666568-------45689999999---99988654037434697743699973899994199999999
Q 001680 595 -AVYKSFYSTIKIPISRN-------SLHGYKKLQAV---LRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 663 (1032)
Q Consensus 595 -~~~~~F~~~~~~pi~~~-------~~~~~~~L~~l---L~~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~er~~ 663 (1032)
.....+...+..|.... .......+..+ +..++-....-. .++.. ....+... .
T Consensus 448 ~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~--------~l~~~----~~~~~g~~---~ 512 (936)
T 4a2w_A 448 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVD--------TLSQN----SKKDFGTQ---N 512 (936)
T ss_dssp CSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------------------CCSSH---H
T ss_pred CCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHC----CCCCCCHH---H
T ss_conf 544899987536776237733655675799999999999999999887665--------55320----22332257---7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999999973087750-----0899999999987521731001223444322011798611993799999962
Q 001680 664 YKKLESDSLKKFKAFADAGTVNQ-----NYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSR 738 (1032)
Q Consensus 664 Y~~l~~~~~~~~~~~~~~g~~~~-----~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~ 738 (1032)
|............. ...... -+..+......++.. .+...+ ............+..
T Consensus 513 y~~~l~~l~k~~~~---~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i---------------~~~~~~~~~~~~l~~ 573 (936)
T 4a2w_A 513 YEHWIVVTQRKCRL---LQLEDKEEESRICRALFICTEHLRKY-NDALII---------------SEDARIIDALSYLTE 573 (936)
T ss_dssp HHHHHHHHHHHHHH---CCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HCCHHHHHHHHHHHH
T ss_conf 99999999998877---40553210357999999999999998-888750---------------020428889999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00144423346899999510346962202223221028999999861101235541001200022457999999999943
Q 001680 739 LETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPF 818 (1032)
Q Consensus 739 le~~~~~C~iC~d~~~~~vit~CgH~fc~~ci~~~~~~~~~~cp~~~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~~ 818 (1032)
. ........ .- .-...+.....-....+...
T Consensus 574 ~------------------------------~~~~~~~~--~~---~~e~~l~~~~~~~~~~l~~~-------------- 604 (936)
T 4a2w_A 574 F------------------------------FTNVKNGP--YT---ELEQHLTAKFQEKEPELIAL-------------- 604 (936)
T ss_dssp H------------------------------HHHHHHTT--CC---HHHHHHHHHHHHHHHHHHHH--------------
T ss_pred H------------------------------HHHHHHCC--CC---HHHHHHHHHHHHHHHHHHHH--------------
T ss_conf 9------------------------------99876325--88---78999999899999999976--------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 44468777533104699999999973110365524565200268898765578999899628999452888999999853
Q 001680 819 ADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLN 898 (1032)
Q Consensus 819 ~~~~~~~~~~~~SsKl~~L~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqft~~ld~L~~~L~ 898 (1032)
.......++|+..|.++|.+...... +.|+|||++++.+++.|...|.
T Consensus 605 -----~~~~~~~~~K~~~L~~lL~~~~~~~~---------------------------~~rvLIF~~t~~~ae~L~~~L~ 652 (936)
T 4a2w_A 605 -----SKDETNENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCME 652 (936)
T ss_dssp -----HTSTTCCCHHHHHHHHHHHHTTTSCT---------------------------TCCEEEEESSHHHHHHHHHHHH
T ss_pred -----HHCCCCCCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHHH
T ss_conf -----40567789799999999999853589---------------------------9749999697999999999986
Q ss_pred HC------------CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 26------------962896079989789999999660696520888413777555544667889995699997927788
Q 001680 899 QH------------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQA 966 (1032)
Q Consensus 899 ~~------------gi~~~~l~Gs~s~~~R~~~I~~F~~~~~~~VlLlSlkagg~GLNLt~A~~VI~lDp~WNp~~e~QA 966 (1032)
.. |..+..++|+|+..+|.++++.|+.++.+.||| +++++++|||++.+++||+||+|||+..+.|+
T Consensus 653 ~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV-aT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr 731 (936)
T 4a2w_A 653 ENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQV 731 (936)
T ss_dssp HCSTTSSCCCEEC----------------------------CCSEEE-EECC------CCCCSEEEEESCCSCSHHHHCC
T ss_pred HCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-EECCHHCCCCCHHCCEEEEECCCCCHHHHHHH
T ss_conf 37353666616996578765678889999999999863159815999-80726427760558989993899988999996
Q ss_pred HHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 572101399443999999958999999999999999999975168
Q 001680 967 VDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 1011 (1032)
Q Consensus 967 igRi~RiGQ~k~V~Vyrli~~dTiEe~I~~lq~~K~~l~~~~~g~ 1011 (1032)
+|| ||.+++.++.|+.++|+|++.+ ++..|.+++..++..
T Consensus 732 ~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 732 RGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp -----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 487----7888877999986988999999-988999999999998
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=314.29 Aligned_cols=472 Identities=14% Similarity=0.160 Sum_probs=266.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46772678999999998310477755643226999825899999998620112331021203321113668988888876
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
...|+|||..++.+++.. +.+|++++||+|||++++..+......
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-------~~~ll~~~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHT----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 899999999999999809-------998999699972999999999999984----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHH-HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC--C
Q ss_conf 7432223698899999876666543336889998549993824-599999999986799998089999389888891--0
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--V 453 (1032)
Q Consensus 377 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-Ll~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~--~ 453 (1032)
......+++|||||.. |+.||.+++.++++.. .+++..++|+...... .
T Consensus 291 ---------------------------~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 342 (797)
T 4a2q_A 291 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (797)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ---------------------------665679969999698999999999999861437-9469999699623246997
Q ss_pred CCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1278749998401231017999998646664201665677611233332101221111356788888777765588887-
Q 001680 454 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 532 (1032)
Q Consensus 454 ~l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~~~~~~~~~~~~~~~~L- 532 (1032)
....++|+|+|++.+...... ..+
T Consensus 343 ~~~~~~Ivv~Tp~~l~~~l~~-------------------------------------------------------~~~~ 367 (797)
T 4a2q_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (797)
T ss_dssp HHHTCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HHCCCCEEEECHHHHHHHHHH-------------------------------------------------------CCCC
T ss_conf 407999999766999999982-------------------------------------------------------6546
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHCC--------CCCEEEEECCCCCCCHHHHHHH-------HHHHCCCCC---
Q ss_conf 5433028999057534893118999998601--------6958999634887996789988-------888716885---
Q 001680 533 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR--------AKRRWCLSGTPIQNSIDDLYSY-------FRFLKYDPY--- 594 (1032)
Q Consensus 533 ~~i~w~rVIiDEAH~iKN~~T~~~kav~~L~--------a~~Rw~LTGTPi~Nsl~DL~sl-------l~fL~~~~~--- 594 (1032)
....|..||+||||.+.+...........+. ..++++|||||.+++..++... ...|....+
T Consensus 368 ~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~ 447 (797)
T 4a2q_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 447 (797)
T ss_dssp CGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 51337789998863558876499999999997631478878599972775545522489999999999985498488545
Q ss_pred -CHHHHHHHHHCCCCCCC-------CHH---HH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHH
Q ss_conf -20489997704666568-------456---89----9999999998865403743469774369997389999419999
Q 001680 595 -AVYKSFYSTIKIPISRN-------SLH---GY----KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKE 659 (1032)
Q Consensus 595 -~~~~~F~~~~~~pi~~~-------~~~---~~----~~L~~lL~~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~ 659 (1032)
.....+...+..|.... ... .. ..++.+++.++- -..+ ..+| ...+...
T Consensus 448 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~----l~~l-----~~~~-------~~~~g~~ 511 (797)
T 4a2q_A 448 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS----VDTL-----SQNS-------KKDFGTQ 511 (797)
T ss_dssp CTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC----------------------------CCSSH
T ss_pred CCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHH-----HHHC-------CCCCCCH
T ss_conf 4317889973588854888457777867899999999999999999875----6776-----5300-------0011405
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHH
Q ss_conf 99999999999999999997308775-----0089999999998752173100122344432201179861199379999
Q 001680 660 EWAFYKKLESDSLKKFKAFADAGTVN-----QNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLID 734 (1032)
Q Consensus 660 er~~Y~~l~~~~~~~~~~~~~~g~~~-----~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~ 734 (1032)
.|............. ..... ..+..+......++..... ..+ ...........
T Consensus 512 ---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~---------------~~~~~~~~~~~ 569 (797)
T 4a2q_A 512 ---NYEHWIVVTQRKCRL---LQLEDKEEESRICRALFICTEHLRKYNDA-LII---------------SEDARIIDALS 569 (797)
T ss_dssp ---HHHHHHHHHHHHHHH---CCCSSHHHHHHHHHHHHHHHHHHHHHHHH-HHH---------------HHHSCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHH---------------HCCCCHHHHHH
T ss_conf ---677899999998777---40343202567999999999999999988-765---------------41325888999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99620014442334689999951034696220222322102899999986110123554100120002245799999999
Q 001680 735 LLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPT 814 (1032)
Q Consensus 735 ~l~~le~~~~~C~iC~d~~~~~vit~CgH~fc~~ci~~~~~~~~~~cp~~~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~ 814 (1032)
.+... ........ .. .....+.....-....+..
T Consensus 570 ~l~~~------------------------------~~~~~~~~----~~-~~~~~l~~~~~~~~~~l~~----------- 603 (797)
T 4a2q_A 570 YLTEF------------------------------FTNVKNGP----YT-ELEQHLTAKFQEKEPELIA----------- 603 (797)
T ss_dssp HHHHH------------------------------HHHHHHTT----CC-HHHHHHHHHHHTTHHHHHH-----------
T ss_pred HHHHH------------------------------HHHHHCCC----CC-HHHHHHHHHHHHHHHHHHH-----------
T ss_conf 99999------------------------------99875047----66-8999999999999999987-----------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 99434446877753310469999999997311036552456520026889876557899989962899945288899999
Q 001680 815 DSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVE 894 (1032)
Q Consensus 815 ~~~~~~~~~~~~~~~~SsKl~~L~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqft~~ld~L~ 894 (1032)
........++|+..|.++|........ +.|+|||++++.+++.|.
T Consensus 604 --------~~~~~~~~~~K~~~L~~lL~~~~~~~~---------------------------~~kvLIF~~~~~~~~~L~ 648 (797)
T 4a2q_A 604 --------LSKDETNENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALK 648 (797)
T ss_dssp --------HHHCTTCCCHHHHHHHHHHHHHHHHCS---------------------------SCCEEEEESSHHHHHHHH
T ss_pred --------HHCCCCCCCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHH
T ss_conf --------630788899599999999999850589---------------------------970899979589999999
Q ss_pred HHHHHC------------CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCH
Q ss_conf 985326------------96289607998978999999966069652088841377755554466788999569999792
Q 001680 895 NSLNQH------------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTT 962 (1032)
Q Consensus 895 ~~L~~~------------gi~~~~l~Gs~s~~~R~~~I~~F~~~~~~~VlLlSlkagg~GLNLt~A~~VI~lDp~WNp~~ 962 (1032)
..|... |..+..++|+|+..+|.++++.|++++.+.||| +++++++|+|++.+++||+||+||||..
T Consensus 649 ~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLV-aT~~~~~GIDlp~v~~VI~yd~p~s~~~ 727 (797)
T 4a2q_A 649 KCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTK 727 (797)
T ss_dssp HHHHTCSTTCSCCCEEC----------------------------CCSEEE-EECC-------CCCSEEEEESCCSCHHH
T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE-ECCCHHCCCCCHHCCEEEEECCCCCHHH
T ss_conf 999747564665521898447754578989999999999851369704999-7480544797510898999489998899
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7788572101399443999999958999999999999999999975168
Q 001680 963 EDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 1011 (1032)
Q Consensus 963 e~QAigRi~RiGQ~k~V~Vyrli~~dTiEe~I~~lq~~K~~l~~~~~g~ 1011 (1032)
+.|++|| ||.+++.++.|+.++++|++ ..++..|..++..++..
T Consensus 728 ~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 728 MIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp HHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 9985388----87878659999728768899-99888999999999998
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=310.04 Aligned_cols=475 Identities=14% Similarity=0.151 Sum_probs=265.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46772678999999998310477755643226999825899999998620112331021203321113668988888876
Q 001680 297 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 376 (1032)
Q Consensus 297 ~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1032)
..+|+|||.+++.+++.. ..+|+++++|+|||++++..+......
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-------~~~l~~~~tGsGKT~~~~~~~~~~~~~---------------------------- 49 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 49 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHT----------------------------
T ss_pred CCCCCHHHHHHHHHHHCC-------CCEEEECCCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 778779999999999749-------989998199971899999999999983----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC--C
Q ss_conf 743222369889999987666654333688999854999382-4599999999986799998089999389888891--0
Q 001680 377 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--V 453 (1032)
Q Consensus 377 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sLl~qW~~Ei~k~~~~~~~l~vlv~~G~~r~~~~--~ 453 (1032)
........+|||||. .|+.||.+++.++++.. .+++..++|....... .
T Consensus 50 ---------------------------~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~ 101 (556)
T 4a2p_A 50 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 101 (556)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHH
T ss_conf ---------------------------745679869999288999999999999872406-9459998289874222898
Q ss_pred CCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1278749998401231017999998646664201665677611233332101221111356788888777765588887-
Q 001680 454 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 532 (1032)
Q Consensus 454 ~l~~~DVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rk~~~~~~k~~~~~~~~~~~~~~~~~~~~L- 532 (1032)
....++|+|+|++.+...... ..+
T Consensus 102 ~~~~~~i~v~T~~~l~~~~~~-------------------------------------------------------~~~~ 126 (556)
T 4a2p_A 102 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 126 (556)
T ss_dssp HHHHCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HHCCCCEEEECHHHHHHHHHH-------------------------------------------------------CCCC
T ss_conf 617999999889999999983-------------------------------------------------------7502
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHC--------CCCCEEEEECCCCCCCHHHHH-------HHHHHHCCCCC---
Q ss_conf 543302899905753489311899999860--------169589996348879967899-------88888716885---
Q 001680 533 AKVGWFRVVLDEAQTIKNHRTQVARACCSL--------RAKRRWCLSGTPIQNSIDDLY-------SYFRFLKYDPY--- 594 (1032)
Q Consensus 533 ~~i~w~rVIiDEAH~iKN~~T~~~kav~~L--------~a~~Rw~LTGTPi~Nsl~DL~-------sll~fL~~~~~--- 594 (1032)
..-.|..||+||||.+.+...........+ ...++++|||||..++..++. .+...|....+
T Consensus 127 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 206 (556)
T 4a2p_A 127 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 206 (556)
T ss_dssp CSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCH
T ss_conf 50307799998875358864599999999985301368887699994785667516699999999999985398484333
Q ss_pred -CHHHHHHHHHCCCCCCC-------CHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf -20489997704666568-------456---8999999999988654037434697743699973899994199999999
Q 001680 595 -AVYKSFYSTIKIPISRN-------SLH---GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAF 663 (1032)
Q Consensus 595 -~~~~~F~~~~~~pi~~~-------~~~---~~~~L~~lL~~~~LRRtk~~v~~g~pii~LPpk~~~~v~v~ls~~er~~ 663 (1032)
.....+...+..|.... ... ....+...+..+.-....-..+ ..++ ...+.. ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~g~---~~ 271 (556)
T 4a2p_A 207 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTL-----SQNS-------KKDFGT---QN 271 (556)
T ss_dssp CTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------------------CCCSS---HH
T ss_pred HCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCC-------CCCCCH---HH
T ss_conf 20267787427998537998278767759999999999999999888632012-----1033-------334433---56
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHH----H
Q ss_conf 9999999999999997308--775008999999999875217310012234443220117986119937999999----6
Q 001680 664 YKKLESDSLKKFKAFADAG--TVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL----S 737 (1032)
Q Consensus 664 Y~~l~~~~~~~~~~~~~~g--~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~~~~l~~~~~~~~l----~ 737 (1032)
|.................. .....+..+......++.. .+...+. ...........+ .
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~---------------~~~~~~~~~~~l~~~~~ 335 (556)
T 4a2p_A 272 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIIS---------------EDARIIDALSYLTEFFT 335 (556)
T ss_dssp HHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---------------HHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH---------------HHHHHHHHHHHHHHHHH
T ss_conf 7899999999877640543201678999999999999999-9999886---------------11207899999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20014442334689999951034696220222322102899999986110123554100120002245799999999994
Q 001680 738 RLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSP 817 (1032)
Q Consensus 738 ~le~~~~~C~iC~d~~~~~vit~CgH~fc~~ci~~~~~~~~~~cp~~~cr~~l~~~~v~~~~~l~~~~~~~~~~~~~~~~ 817 (1032)
.+.... .+.. .......+.. ....+..
T Consensus 336 ~~~~~~------~~~~------------~~~~~~~~~~---------------------~~~~l~~-------------- 362 (556)
T 4a2p_A 336 NVKNGP------YTEL------------EQHLTAKFQE---------------------KEPELIA-------------- 362 (556)
T ss_dssp HHHHSC------CCHH------------HHHHHHHHHT---------------------THHHHHH--------------
T ss_pred HHHHCC------CCHH------------HHHHHHHHHH---------------------HHHHHHH--------------
T ss_conf 987337------9878------------9999998766---------------------7887642--------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 34446877753310469999999997311036552456520026889876557899989962899945288899999985
Q 001680 818 FADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL 897 (1032)
Q Consensus 818 ~~~~~~~~~~~~~SsKl~~L~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSqft~~ld~L~~~L 897 (1032)
........++|+..|.++|.+...... +.|+|||+++..+++.|...|
T Consensus 363 -----~~~~~~~~~~K~~~L~~~l~~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L 410 (556)
T 4a2p_A 363 -----LSKDETNENPKLEELVCILDDAYRYNP---------------------------QTRTLLFAKTRALVSALKKCM 410 (556)
T ss_dssp -----HHHCSSSCCHHHHHHHHHHHHHHHHCT---------------------------TCCEEEEESSHHHHHHHHHHH
T ss_pred -----HCCCCCCCCHHHHHHHHHHHHHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHH
T ss_conf -----103789999699999999999834799---------------------------854999976589999999999
Q ss_pred HHC------------CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 326------------96289607998978999999966069652088841377755554466788999569999792778
Q 001680 898 NQH------------CIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQ 965 (1032)
Q Consensus 898 ~~~------------gi~~~~l~Gs~s~~~R~~~I~~F~~~~~~~VlLlSlkagg~GLNLt~A~~VI~lDp~WNp~~e~Q 965 (1032)
... |..+..++|+|+..+|.++++.|++++.+.||+ +++++++|+|++.+++||+||+|||+..+.|
T Consensus 411 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~GiDip~v~~VI~~d~p~s~~~~~Q 489 (556)
T 4a2p_A 411 EENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQ 489 (556)
T ss_dssp TTCSGGGSCCEEC------------------------------CCEEE-EEC-----------CEEEEETCCSCHHHHHH
T ss_pred HHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHCCCCCHHCCEEEEECCCCCHHHHHH
T ss_conf 858775500014787367765565669899999999840469658999-7670433777521788999189997889988
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8572101399443999999958999999999999999999975168
Q 001680 966 AVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGE 1011 (1032)
Q Consensus 966 AigRi~RiGQ~k~V~Vyrli~~dTiEe~I~~lq~~K~~l~~~~~g~ 1011 (1032)
++|| ||.+++.++.|+.++++|++ +.++..|.+++..++..
T Consensus 490 r~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 490 VRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp C------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 6387----87888418999827636777-77557999999999997
Done!