Query 001682
Match_columns 1031
No_of_seqs 336 out of 1087
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 15:50:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001682.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_981-984//hhsearch_pdb/001682hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 1.0 1 1 188.2 12.9 88 593-684 1-88 (104)
2 1jo0_A Hypothetical protein HI 1.0 1 1 183.7 13.1 87 593-683 2-88 (98)
3 1jo0_A Hypothetical protein HI 1.0 1 1 182.3 12.6 90 178-267 1-90 (98)
4 1rq8_A Conserved hypothetical 1.0 1 1 182.2 13.5 89 179-267 1-89 (104)
5 3ka5_A Ribosome-associated pro 1.0 1 1 18.4 6.4 49 222-270 1-52 (65)
6 3lyv_A Ribosome-associated fac 1.0 1 1 18.0 3.4 49 222-270 2-53 (66)
7 3k2t_A LMO2511 protein; lister 1.0 1 1 17.7 3.7 48 222-269 1-51 (57)
8 2zkr_v 60S ribosomal protein L 1.0 1 1 16.1 0.0 57 648-713 49-111 (123)
9 1ylf_A RRF2 family protein; st 1.0 1 1 15.9 -1.0 52 60-113 39-90 (149)
10 1xd7_A YWNA; structural genomi 1.0 1 1 15.8 0.1 52 60-113 32-83 (145)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=1.00 E-value=1 Score=188.20 Aligned_cols=88 Identities=23% Similarity=0.398 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 99999999999612477745870567878779999999985055287992589999999999999989399899722127
Q 001682 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (1031)
Q Consensus 593 ~LT~eERk~LRkiGlklkpiv~IGKrGVtdgVIe~Ih~alk~rELVKV~v~~~~~ed~keiA~~Le~~SGgiLVqv~k~~ 672 (1031)
|||++||+|||++||+++|+|+||++|||++|+.+|++||++||||||+|++++.++++++|..|++.+||++||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~---- 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV---- 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE----
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_conf 9798999999997468998699778879999999999999978947999807987789999999999869999999----
Q ss_pred CCCEEEEECCCC
Q ss_conf 473999971699
Q 001682 673 KGYAIILYRGKN 684 (1031)
Q Consensus 673 IG~tIILYRgKN 684 (1031)
||+++||||++.
T Consensus 77 IG~~~VLYR~~~ 88 (104)
T 1rq8_A 77 IGSMIVIYRESK 88 (104)
T ss_dssp ETTEEEEEECCC
T ss_pred ECCEEEEEECCC
T ss_conf 999999995788
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=1.00 E-value=1 Score=183.69 Aligned_cols=87 Identities=17% Similarity=0.350 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 99999999999612477745870567878779999999985055287992589999999999999989399899722127
Q 001682 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (1031)
Q Consensus 593 ~LT~eERk~LRkiGlklkpiv~IGKrGVtdgVIe~Ih~alk~rELVKV~v~~~~~ed~keiA~~Le~~SGgiLVqv~k~~ 672 (1031)
.||++||+|||++||+++|+|+||++|||++|+.+|++||++||||||+|++++++++++++.+|++.+||++||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~---- 77 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT---- 77 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_conf 8998999999997547998699778779999999999999977927999817987789999999999969999999----
Q ss_pred CCCEEEEECCC
Q ss_conf 47399997169
Q 001682 673 KGYAIILYRGK 683 (1031)
Q Consensus 673 IG~tIILYRgK 683 (1031)
||+++||||++
T Consensus 78 IG~~~vLyR~~ 88 (98)
T 1jo0_A 78 IGHILVLYRPS 88 (98)
T ss_dssp ETTEEEEECCC
T ss_pred ECCEEEEECCC
T ss_conf 99999998069
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=1.00 E-value=1 Score=182.31 Aligned_cols=90 Identities=26% Similarity=0.364 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 26999999999960039988088379999899999999999838828799637752549999999999859979989883
Q 001682 178 LKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGS 257 (1031)
Q Consensus 178 l~LT~kErr~LRklA~~Lkp~V~IGK~GLTe~VVeeI~~aWkk~ELVKIKi~g~~~~dmk~~ae~LE~kTGG~VV~riG~ 257 (1031)
..||++|+++||++||+|+|+|+|||+|+|++|+++|+++|++||||||+|.+++.+++++++++|+++|||++||+||+
T Consensus 1 ~~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~ 80 (98)
T 1jo0_A 1 TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGH 80 (98)
T ss_dssp CCCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETT
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 98998999999997547998699778779999999999999977927999817987789999999999969999999999
Q ss_pred EEEEEECCCC
Q ss_conf 9999824899
Q 001682 258 KIILYRGADY 267 (1031)
Q Consensus 258 tiVLYRGknY 267 (1031)
++||||++..
T Consensus 81 ~~vLyR~~~~ 90 (98)
T 1jo0_A 81 ILVLYRPSEE 90 (98)
T ss_dssp EEEEECCCSS
T ss_pred EEEEECCCCC
T ss_conf 9999806998
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=1.00 E-value=1 Score=182.17 Aligned_cols=89 Identities=28% Similarity=0.413 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCE
Q ss_conf 69999999999600399880883799998999999999998388287996377525499999999998599799898839
Q 001682 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258 (1031)
Q Consensus 179 ~LT~kErr~LRklA~~Lkp~V~IGK~GLTe~VVeeI~~aWkk~ELVKIKi~g~~~~dmk~~ae~LE~kTGG~VV~riG~t 258 (1031)
+||++|+++||++||+|+|+|+|||+|+|++|+++|+++|++||||||+|.+++..++++++++|+++|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCE
T ss_conf 97989999999974689986997788799999999999999789479998079877899999999998699999999999
Q ss_pred EEEEECCCC
Q ss_conf 999824899
Q 001682 259 IILYRGADY 267 (1031)
Q Consensus 259 iVLYRGknY 267 (1031)
+||||++..
T Consensus 81 ~VLYR~~~~ 89 (104)
T 1rq8_A 81 IVIYRESKE 89 (104)
T ss_dssp EEEEECCCS
T ss_pred EEEEECCCC
T ss_conf 999957887
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=1.00 E-value=1 Score=18.44 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=41.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---CCEEEEEECCCCCCC
Q ss_conf 8287996377525499999999998599799898---839999824899899
Q 001682 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKYP 270 (1031)
Q Consensus 222 ELVKIKi~g~~~~dmk~~ae~LE~kTGG~VV~ri---G~tiVLYRGknY~~P 270 (1031)
++|+.|-......+.++++.+++..-.--+|-+. |.+-|+||.++.++-
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 9599986057989999999998707993999981789979899996899799
No 6
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=1.00 E-value=1 Score=18.01 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=38.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---CCEEEEEECCCCCCC
Q ss_conf 8287996377525499999999998599799898---839999824899899
Q 001682 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKYP 270 (1031)
Q Consensus 222 ELVKIKi~g~~~~dmk~~ae~LE~kTGG~VV~ri---G~tiVLYRGknY~~P 270 (1031)
++|+.|-......+.++++.+++-.-.--+|-+. |..-|+||.++..+-
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yG 53 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLG 53 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEE
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 1799987057989999999998707993999981789989899997899799
No 7
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=1.00 E-value=1 Score=17.70 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---CCEEEEEECCCCCC
Q ss_conf 8287996377525499999999998599799898---83999982489989
Q 001682 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKY 269 (1031)
Q Consensus 222 ELVKIKi~g~~~~dmk~~ae~LE~kTGG~VV~ri---G~tiVLYRGknY~~ 269 (1031)
++|+.|-......+.+++..+++..-.--+|-+. |..-|+||.++.++
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCE
T ss_conf 938998626798999999999872799599998078898989999679979
No 8
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=1.00 E-value=1 Score=16.06 Aligned_cols=57 Identities=32% Similarity=0.391 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCC------CCHHHHHHHHHHHHHHH
Q ss_conf 9999999999989399899722127473999971699999976786632------55899999759999977
Q 001682 648 EAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTL------LTKREAMKRSLEAQRRQ 713 (1031)
Q Consensus 648 ed~keiA~~Le~~SGgiLVqv~k~~IG~tIILYRgKNY~rP~~l~P~~l------LtKrkAl~rs~e~qr~~ 713 (1031)
.-+++||..+-....-..- ..--+|+|+.|. |..++|+-+ |||.++-.+..-.|+++
T Consensus 49 ~vRrdIARI~Tvl~er~~~--------~lr~~yk~kk~~-p~dlr~k~tra~rr~Lt~~~~~~kt~k~~~k~ 111 (123)
T 2zkr_v 49 VVRKSIARVLTVINQTQKE--------NLRKFYKGKKYK-PLDLRPKKTRAMRRRLNKHEENLKTKKQQRKE 111 (123)
T ss_dssp HHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHCCCCCC-CCCCCHHHHHHHHHHCCHHHHHHCCHHHHHHH
T ss_conf 9999999999999999999--------999998389878-75434377899998728787705139999999
No 9
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=1.00 E-value=1 Score=15.95 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 247987279999999871597546888899899998777789997500028998
Q 001682 60 VQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHR 113 (1031)
Q Consensus 60 ~~~~~~s~~~rI~~kLr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~ 113 (1031)
-...+.+.+++|+.+|++.||++...... .-.....++..+.+||+...+|.
T Consensus 39 ~~~i~~~~l~kil~~L~~~Glv~s~rG~G--Gy~L~~~p~~Itl~dVi~a~e~~ 90 (149)
T 1ylf_A 39 SVNTNPVVIRKIMSYLKQAGFVYVNRGPG--GAGLLKDLHEITLLDVYHAVNVV 90 (149)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEC---C--CEEESSCGGGCBHHHHHHHHCC-
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEECCCCC--CEEECCCHHHCCHHHHHHHHCCC
T ss_conf 88909999999999999889279706787--13767894669499999997244
No 10
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=1.00 E-value=1 Score=15.79 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 247987279999999871597546888899899998777789997500028998
Q 001682 60 VQNDTTSAIQRIADKLRSLGIVEQTTSKDDTLNPEPETRATDNAGEIFIPLPHR 113 (1031)
Q Consensus 60 ~~~~~~s~~~rI~~kLr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~ 113 (1031)
-+..|.+-+++|+.+|++.|++..... .- .-.....++..+.+||+...+|.
T Consensus 32 ~~~i~~~~l~kIl~~L~~aGlv~s~rG-~G-Gy~Lar~p~~Itl~dVi~aveg~ 83 (145)
T 1xd7_A 32 SVNTNPVVVRRMISLLKKADILTSRAG-VP-GASLKKDPADISLLEVYRAVQKQ 83 (145)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEECCSS-SS-SCEESSCGGGCBHHHHHHHHCC-
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEECC-CC-CCEECCCHHHCCHHHHHHHHCCC
T ss_conf 889099999999999998896686058-88-74533898879899999998587
Done!