BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001683
(1030 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 175/339 (51%), Gaps = 17/339 (5%)
Query: 267 ISLGAKHAALVTKEGEVFC-WGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQ 325
IS GA H+ + G++ C WG G+DG+LGH D P + L G + SV+CG
Sbjct: 21 ISAGASHSVALLS-GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADH 79
Query: 326 TCALTKSG-EIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIV 384
T A ++SG E+Y+WG + G +G S + P + L G+R+ ++ACG+ H V
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGR--LGHGNSSDLFTPLPI-KALHGIRIKQIACGDSHCLAV 136
Query: 385 STSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRC 444
+ G++ ++G G LG G+ ++ P+++++ G+++K VA G HTAA+ +
Sbjct: 137 TMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------ 190
Query: 445 KSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGK 504
G L+ WG G LG D +L+P VT +CG T+ ++ G
Sbjct: 191 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245
Query: 505 VYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNA 564
+YT G + +GQLG+ +D I L F+ IS G H LTS G +Y WG N
Sbjct: 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNK 305
Query: 565 NGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
GQ+G+G++ ++ +P V D++V V CG T A+
Sbjct: 306 FGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 184/363 (50%), Gaps = 20/363 (5%)
Query: 228 VLGGDI----GGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEG-E 282
+L GDI G DG + + D P L + + +++ GA H ++ G E
Sbjct: 31 LLSGDIVCSWGRGEDGQLGHGDAE-DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME 89
Query: 283 VFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNN 342
V+ WG G GRLGH + D+ P ++ L GI ++ ++CG+ A+T GE+ +WG N
Sbjct: 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 149
Query: 343 HGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLG 402
+G +G+ + +P+K+ +G+R+ VA G HTA V+ G L+ +G G +G LG
Sbjct: 150 NGQLGLGD--TEDSLVPQKI-QAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLG 206
Query: 403 HGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKG 462
G+ + P+ V S G K+ VACG HT ++ + G L+T+G + G
Sbjct: 207 LGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV-----------SYSGALYTYGWSKYG 255
Query: 463 RLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAK 522
+LGH D E L+P + L + Q S G T+ LT GK+Y G GQ+G
Sbjct: 256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315
Query: 523 DRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFV 582
D+ V ++ V +S G H +T +V+ WG+ NGQLG+G+S +R P +
Sbjct: 316 DQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 375
Query: 583 EAL 585
EAL
Sbjct: 376 EAL 378
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 163/336 (48%), Gaps = 25/336 (7%)
Query: 192 TRCPKNESHRLVTPTYGSP-LIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDA 250
T+ + H++V+ T G+ + +V WG G D G G+ S D
Sbjct: 60 TQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG----DFGRLGHGNSS------DL 109
Query: 251 LLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVEC 310
P +++ + ++ I+ G H VT EGEV WG ++G+LG D P+ ++
Sbjct: 110 FTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169
Query: 311 LSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVR 370
GI ++ V+ G T A+T+ G++Y WG +G +G+R R +P ++ T G +
Sbjct: 170 FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL--VPERVTST-GGEK 226
Query: 371 VSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGP 430
+S VACG HT VS SG L+TYG +G LGHG+L++ P ++E+L + ++ G
Sbjct: 227 MSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW 286
Query: 431 WHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQAS 490
HT A+ GKL+ WG G++G + + P V D VQ S
Sbjct: 287 RHTMALTS-----------DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVS 335
Query: 491 CGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSI 526
CG T+ +T V+ G +GQLG ++ DR+
Sbjct: 336 CGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 371
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 10/234 (4%)
Query: 370 RVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACG 429
+V ++ G H+ + + + ++G G G LGHG+ ++ P ++ +L G ++ SV CG
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 76
Query: 430 PWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQA 489
HT A + G ++++WG D GRLGH + P + L Q
Sbjct: 77 ADHTVAY----------SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQI 126
Query: 490 SCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVA 549
+CG + +T G+V + G +GQLG +D + + +K +++G+ H A
Sbjct: 127 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 186
Query: 550 VLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
+T G +Y WG G LGLGD +R P V + ++ V CG T ++
Sbjct: 187 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 240
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 490 SCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYH-V 548
S G +V L V + G GQLG+ A+DR L + ++ G+ H V
Sbjct: 22 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTV 81
Query: 549 AVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAICLHKS 608
A SG VY+WG G+LG G+S + TP ++AL +++ + CG S A+ +
Sbjct: 82 AYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGE 141
Query: 609 I 609
+
Sbjct: 142 V 142
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLS 312
V +S G +H VT+ VF WG G +G+LG ++D + PK++E LS
Sbjct: 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 176/339 (51%), Gaps = 17/339 (5%)
Query: 267 ISLGAKHAALVTKEGEVFC-WGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQ 325
IS GA H+ + G++ C WG G+DG+LGH D P + L G + SV+CG
Sbjct: 11 ISAGASHSVALLS-GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADH 69
Query: 326 TCALTKSG-EIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIV 384
T A ++SG E+Y+WG + G +G S + P + L G+R+ ++ACG+ H V
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGR--LGHGNSSDLFTPLPI-KALHGIRIKQIACGDSHCLAV 126
Query: 385 STSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRC 444
+ G++ ++G G LG G+ ++ P+++++ G+++K VA G HTAA+ +
Sbjct: 127 TXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTE------ 180
Query: 445 KSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGK 504
G L+ WG G LG D +L+P VT +CG T+ ++ G
Sbjct: 181 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235
Query: 505 VYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNA 564
+YT G + +GQLG+ +D I L F+ IS G+ H LTS G +Y WG N
Sbjct: 236 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNK 295
Query: 565 NGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
GQ+G+G++ ++ +P V D++V V CG T A+
Sbjct: 296 FGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 334
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 182/363 (50%), Gaps = 20/363 (5%)
Query: 228 VLGGDI----GGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEG-E 282
+L GDI G DG + + D P L + + +++ GA H ++ G E
Sbjct: 21 LLSGDIVCSWGRGEDGQLGHGDAE-DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXE 79
Query: 283 VFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNN 342
V+ WG G GRLGH + D+ P ++ L GI ++ ++CG+ A+T GE+ +WG N
Sbjct: 80 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQ 139
Query: 343 HGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLG 402
+G +G+ + +P+K+ +G+R+ VA G HTA V+ G L+ +G G +G LG
Sbjct: 140 NGQLGLGD--TEDSLVPQKI-QAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLG 196
Query: 403 HGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKG 462
G+ + P+ V S G K VACG HT ++ + G L+T+G + G
Sbjct: 197 LGDRTDRLVPERVTSTGGEKXSXVACGWRHTISV-----------SYSGALYTYGWSKYG 245
Query: 463 RLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAK 522
+LGH D E L+P + L + Q S G T LT GK+Y G GQ+G
Sbjct: 246 QLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNL 305
Query: 523 DRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFV 582
D+ V ++ V +S G H +T +V+ WG+ NGQLG+G+S +R P +
Sbjct: 306 DQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 365
Query: 583 EAL 585
EAL
Sbjct: 366 EAL 368
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 10/234 (4%)
Query: 370 RVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACG 429
+V ++ G H+ + + + ++G G G LGHG+ ++ P ++ +L G ++ SV CG
Sbjct: 7 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 66
Query: 430 PWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQA 489
HT A + G ++++WG D GRLGH + P + L Q
Sbjct: 67 ADHTVAY----------SQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQI 116
Query: 490 SCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVA 549
+CG + +T G+V + G +GQLG +D + + +K +++G+ H A
Sbjct: 117 ACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTA 176
Query: 550 VLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
+T G +Y WG G LGLGD +R P V + + V CG T ++
Sbjct: 177 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISV 230
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLS 312
V +S G +H VT+ VF WG G +G+LG ++D + PK++E LS
Sbjct: 321 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 175/339 (51%), Gaps = 17/339 (5%)
Query: 267 ISLGAKHAALVTKEGEVFC-WGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQ 325
IS GA H+ + G++ C WG G+DG+LGH D P + L G + SV+CG
Sbjct: 9 ISAGASHSVALLS-GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 326 TCALTKSG-EIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIV 384
T A ++SG E+Y+WG + G +G S + P + L G+R+ ++ACG+ H V
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGR--LGHGNSSDLFTPLPI-KALHGIRIKQIACGDSHCLAV 124
Query: 385 STSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRC 444
+ G++ ++G G LG G+ ++ P+++++ G+++K VA G HTAA+ +
Sbjct: 125 TMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------ 178
Query: 445 KSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGK 504
G L+ WG G LG D +L+P VT +CG T+ ++ G
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 505 VYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNA 564
+YT G + +GQLG+ +D I L F+ IS G H LTS G +Y WG N
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNK 293
Query: 565 NGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
GQ+G+G++ ++ +P V D++V V CG T A+
Sbjct: 294 FGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 184/363 (50%), Gaps = 20/363 (5%)
Query: 228 VLGGDI----GGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEG-E 282
+L GDI G DG + + D P L + + +++ GA H ++ G E
Sbjct: 19 LLSGDIVCSWGRGEDGQLGHGDAE-DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME 77
Query: 283 VFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNN 342
V+ WG G GRLGH + D+ P ++ L GI ++ ++CG+ A+T GE+ +WG N
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 137
Query: 343 HGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLG 402
+G +G+ + +P+K+ +G+R+ VA G HTA V+ G L+ +G G +G LG
Sbjct: 138 NGQLGLGD--TEDSLVPQKI-QAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLG 194
Query: 403 HGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKG 462
G+ + P+ V S G K+ VACG HT ++ + G L+T+G + G
Sbjct: 195 LGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV-----------SYSGALYTYGWSKYG 243
Query: 463 RLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAK 522
+LGH D E L+P + L + Q S G T+ LT GK+Y G GQ+G
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 523 DRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFV 582
D+ V ++ V +S G H +T +V+ WG+ NGQLG+G+S +R P +
Sbjct: 304 DQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 363
Query: 583 EAL 585
EAL
Sbjct: 364 EAL 366
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 10/234 (4%)
Query: 370 RVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACG 429
+V ++ G H+ + + + ++G G G LGHG+ ++ P ++ +L G ++ SV CG
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 430 PWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQA 489
HT A + G ++++WG D GRLGH + P + L Q
Sbjct: 65 ADHTVAY----------SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQI 114
Query: 490 SCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVA 549
+CG + +T G+V + G +GQLG +D + + +K +++G+ H A
Sbjct: 115 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 174
Query: 550 VLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
+T G +Y WG G LGLGD +R P V + ++ V CG T ++
Sbjct: 175 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 228
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 490 SCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYH-V 548
S G +V L V + G GQLG+ A+DR L + ++ G+ H V
Sbjct: 10 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTV 69
Query: 549 AVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAICLHKS 608
A SG VY+WG G+LG G+S + TP ++AL +++ + CG S A+ +
Sbjct: 70 AYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGE 129
Query: 609 I 609
+
Sbjct: 130 V 130
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLS 312
V +S G +H VT+ VF WG G +G+LG ++D + PK++E LS
Sbjct: 319 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 175/339 (51%), Gaps = 17/339 (5%)
Query: 267 ISLGAKHAALVTKEGEVFC-WGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQ 325
IS GA H+ + G++ C WG G+DG+LGH D P + L G + SV+CG
Sbjct: 9 ISAGASHSVALLS-GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 326 TCALTKSG-EIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIV 384
T A ++SG E+Y+WG + G +G S + P + L G+R+ ++ACG+ H V
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGR--LGHGNSSDLFTPLPI-KALHGIRIKQIACGDSHCLAV 124
Query: 385 STSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRC 444
+ G++ ++G G LG G+ ++ P+++++ G+++K VA G HTAA+ +
Sbjct: 125 TMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------ 178
Query: 445 KSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGK 504
G L+ WG G LG D +L+P VT +CG T+ ++ G
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 505 VYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNA 564
+YT G + +GQLG+ +D I L F+ IS G H LTS G +Y WG N
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNK 293
Query: 565 NGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
GQ+G+G++ ++ +P V D++V V CG T A+
Sbjct: 294 FGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 184/363 (50%), Gaps = 20/363 (5%)
Query: 228 VLGGDI----GGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEG-E 282
+L GDI G DG + + D P L + + +++ GA H ++ G E
Sbjct: 19 LLSGDIVCSWGRGEDGQLGHGDAE-DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME 77
Query: 283 VFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNN 342
V+ WG G GRLGH + D+ P ++ L GI ++ ++CG+ A+T GE+ +WG N
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 137
Query: 343 HGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLG 402
+G +G+ + +P+K+ +G+R+ VA G HTA V+ G L+ +G G +G LG
Sbjct: 138 NGQLGLGD--TEDSLVPQKI-QAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLG 194
Query: 403 HGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKG 462
G+ + P+ V S G K+ VACG HT ++ + G L+T+G + G
Sbjct: 195 LGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV-----------SYSGALYTYGWSKYG 243
Query: 463 RLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAK 522
+LGH D E L+P + L + Q S G T+ LT GK+Y G GQ+G
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 523 DRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFV 582
D+ V ++ V +S G H +T +V+ WG+ NGQLG+G+S +R P +
Sbjct: 304 DQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 363
Query: 583 EAL 585
EAL
Sbjct: 364 EAL 366
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 163/336 (48%), Gaps = 25/336 (7%)
Query: 192 TRCPKNESHRLVTPTYGSP-LIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDA 250
T+ + H++V+ T G+ + +V WG G D G G+ S D
Sbjct: 48 TQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG----DFGRLGHGNSS------DL 97
Query: 251 LLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVEC 310
P +++ + ++ I+ G H VT EGEV WG ++G+LG D P+ ++
Sbjct: 98 FTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 157
Query: 311 LSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVR 370
GI ++ V+ G T A+T+ G++Y WG +G +G+R R +P ++ T G +
Sbjct: 158 FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL--VPERVTST-GGEK 214
Query: 371 VSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGP 430
+S VACG HT VS SG L+TYG +G LGHG+L++ P ++E+L + ++ G
Sbjct: 215 MSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW 274
Query: 431 WHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQAS 490
HT A+ GKL+ WG G++G + + P V D VQ S
Sbjct: 275 RHTMALTS-----------DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVS 323
Query: 491 CGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSI 526
CG T+ +T V+ G +GQLG ++ DR+
Sbjct: 324 CGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 10/234 (4%)
Query: 370 RVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACG 429
+V ++ G H+ + + + ++G G G LGHG+ ++ P ++ +L G ++ SV CG
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 430 PWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQA 489
HT A + G ++++WG D GRLGH + P + L Q
Sbjct: 65 ADHTVAY----------SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQI 114
Query: 490 SCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVA 549
+CG + +T G+V + G +GQLG +D + + +K +++G+ H A
Sbjct: 115 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 174
Query: 550 VLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
+T G +Y WG G LGLGD +R P V + ++ V CG T ++
Sbjct: 175 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 228
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 490 SCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYH-V 548
S G +V L V + G GQLG+ A+DR L + ++ G+ H V
Sbjct: 10 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTV 69
Query: 549 AVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAICLHKS 608
A SG VY+WG G+LG G+S + TP ++AL +++ + CG S A+ +
Sbjct: 70 AYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGE 129
Query: 609 I 609
+
Sbjct: 130 V 130
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLS 312
V +S G +H VT+ VF WG G +G+LG ++D + PK++E LS
Sbjct: 319 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 185/371 (49%), Gaps = 24/371 (6%)
Query: 235 GAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRL 294
G ++G+ + T +AL A + VQ I G + VT +G+++ G G GRL
Sbjct: 34 GGIEGAKVKVPTPCEAL-------ATLRPVQLIG-GEQTLFAVTADGKLYATGYGAGGRL 85
Query: 295 GHKVNMDVSCPKLVECLSGINVQ--SVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERR 352
G VS P L+E + + ++ +V+ G AL+ GE+Y+WG G G R
Sbjct: 86 GIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS 145
Query: 353 SRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQP 412
PR + ++L G+ V VA G H+A V+ +G L+T+G G +G LGH + ++ +P
Sbjct: 146 PCDR--PR-VIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP 202
Query: 413 KEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERK 472
K VE+L+G +V +ACG + D +++WGD D G+LG +
Sbjct: 203 KLVEALQGHRVVDIACGSGDAQTLCLTDDD---------TVWSWGDGDYGKLGRGGSDGC 253
Query: 473 LLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKD-RSITVVEG 531
+P + L V+ CG +V LT G VYT G + +LG+ R V+G
Sbjct: 254 KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG 313
Query: 532 KLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVE 591
L+ + V I++GS H T G VYTWG N GQLG G + + P V AL+ ++V
Sbjct: 314 -LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVN 372
Query: 592 SVVCGSSITAA 602
V CGS+ T A
Sbjct: 373 RVACGSAHTLA 383
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 131/274 (47%), Gaps = 14/274 (5%)
Query: 332 SGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLF 391
SG IY WGHN+ G +G +P + L +R ++ GE V+ G+L+
Sbjct: 19 SGTIYGWGHNHRGQ--LGGIEGAKVKVPTPC-EALATLRPVQLIGGEQTLFAVTADGKLY 75
Query: 392 TYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGG 451
G G G LG G ++VS P +ES++ + +K VA V+ C + + G
Sbjct: 76 ATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVA---------VNSGGKHCLALSSEG 126
Query: 452 KLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSA 511
++++WG+A+ G+LGH + P + L + V + G + +T G +YT G
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 512 VHGQLGNPKAKDRSITVVEGKLKEEFVKGIS--SGSYHVAVLTSGGSVYTWGKNANGQLG 569
+G+LG+ ++D+ + L+ V I+ SG LT +V++WG G+LG
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 246
Query: 570 LGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603
G S + P +++L V V CGS + A+
Sbjct: 247 RGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 280
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 103/214 (48%), Gaps = 21/214 (9%)
Query: 176 HMETENFMKWELNYADTRCPKNESHRLVTPTYGSPLIERKDILKD--VMIWGEGVLGGDI 233
H ++E+ +K +L A + HR+V GS + + D V WG+G G
Sbjct: 193 HSDSEDQLKPKLVEA------LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 246
Query: 234 GGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGR 293
G DG +P ++S L V + G++ + +TK G V+ WG+G R
Sbjct: 247 RGGSDG----------CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHR 296
Query: 294 LGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRS 353
LGH + V P+ V+ L G V +++ G T+ GE+YTWG N+ G +G+ +
Sbjct: 297 LGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQ--LGDGTT 354
Query: 354 RSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTS 387
+ PR L L G +V++VACG HT STS
Sbjct: 355 NAIQRPR-LVAALQGKKVNRVACGSAHTLAWSTS 387
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 17/229 (7%)
Query: 387 SGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKS 446
SG ++ +G G LG V P E+L L+ + G + + D
Sbjct: 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGE---QTLFAVTAD---- 71
Query: 447 NAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRL--VDFDFVQASCGRMLTVGLTGLGK 504
GKL+ G GRLG E PT + + V V + G + L+ G+
Sbjct: 72 ----GKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGE 127
Query: 505 VYTMGSAVHGQLG--NPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGK 562
VY+ G A G+LG N DR V+E E V +++G H A +T+ G +YTWGK
Sbjct: 128 VYSWGEAEDGKLGHGNRSPCDRP-RVIESLRGIEVVD-VAAGGAHSACVTAAGDLYTWGK 185
Query: 563 NANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAICLHKSISV 611
G+LG DS+++ P VEAL+ +V + CGS +CL +V
Sbjct: 186 GRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV 234
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 162/358 (45%), Gaps = 51/358 (14%)
Query: 273 HAALVTKEGEVFCWGEGKDGRLGHKVN-MDVSCPKLVECLSGINVQSVSCGEFQTCALTK 331
H + T+ G V G+G G+LG N M+ P LV +V G T L+K
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSK 76
Query: 332 SGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLF 391
SG++Y++G N+ GA S +P K+ +V +V+ G+ HTA ++ G++F
Sbjct: 77 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ---EKVVQVSAGDSHTAALTDDGRVF 133
Query: 392 TYG-----DGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKS 446
+G +G G+L ++ P +V+ + V VA G H +V + D
Sbjct: 134 LWGSFRDNNGVIGLLE--PMKKSMVPVQVQ--LDVPVVKVASGNDH---LVMLTAD---- 182
Query: 447 NAIGGKLFTWGDADKGRLGHVDG-----------ERKLLPTCVT-----RLVDFDFVQAS 490
G L+T G ++G+LG V ER L+P CV F A
Sbjct: 183 ----GDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF 238
Query: 491 CGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKD----RSITVVEGKLKEEFVKGISSGSY 546
CG T ++ G VY G + + QLG P + +++T + K G S G +
Sbjct: 239 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV--GFSGGQH 296
Query: 547 HVAVLTSGGSVYTWGKNANGQLGLGD-SQERETPTFVEALRDRQVESVVCGSSITAAI 603
H + S G Y+ G+ G+LGLG+ ++E+ PT + L V SV CG+S+ A+
Sbjct: 297 HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAV 352
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 167/370 (45%), Gaps = 44/370 (11%)
Query: 263 DVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVS--CPKLVECLSGINVQSVS 320
DV G H ++K G+V+ +G +G LG +++ S P VE V VS
Sbjct: 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVS 117
Query: 321 CGEFQTCALTKSGEIYTWG--HNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGE 378
G+ T ALT G ++ WG +N+G + E +S +P ++ LD V V KVA G
Sbjct: 118 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKS-MVPVQV--QLD-VPVVKVASGN 173
Query: 379 WHTAIVSTSGQLFTYGDGTFGVLGH-----------GNLQNVSQPKEV----ESLRG-LK 422
H +++ G L+T G G G LG L+ + PK V RG ++
Sbjct: 174 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVR 233
Query: 423 VKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLV 482
+ CG + T AI + G ++ +G ++ +LG E +P +T
Sbjct: 234 FQDAFCGAYFTFAI-----------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 282
Query: 483 DF--DFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLG-NPKAKDRSITVVEGKLKEEFVK 539
+ +V S G+ TV + GK Y++G A +G+LG A+++SI + +L V
Sbjct: 283 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VS 340
Query: 540 GISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFV--EALRDRQVESVVCGS 597
++ G+ +T G V+ WG N QLG G ++ +P + + L +R V SV G
Sbjct: 341 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 400
Query: 598 SITAAICLHK 607
T + K
Sbjct: 401 QHTVLLVKDK 410
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCP--KLVECLSGINVQSVSC 321
V +++ GA VTK+G VF WG G + +LG + D P + + L V SVS
Sbjct: 339 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSS 398
Query: 322 GEFQTCALTKSGE 334
G T L K E
Sbjct: 399 GGQHTVLLVKDKE 411
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 162/358 (45%), Gaps = 51/358 (14%)
Query: 273 HAALVTKEGEVFCWGEGKDGRLGHKVN-MDVSCPKLVECLSGINVQSVSCGEFQTCALTK 331
H + T+ G V G+G G+LG N M+ P LV +V G T L+K
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSK 65
Query: 332 SGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLF 391
SG++Y++G N+ GA S +P K+ +V +V+ G+ HTA ++ G++F
Sbjct: 66 SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ---EKVVQVSAGDSHTAALTDDGRVF 122
Query: 392 TYG-----DGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKS 446
+G +G G+L ++ P +V+ + V VA G H +V + D
Sbjct: 123 LWGSFRDNNGVIGLLE--PMKKSMVPVQVQ--LDVPVVKVASGNDH---LVMLTAD---- 171
Query: 447 NAIGGKLFTWGDADKGRLGHVDG-----------ERKLLPTCVT-----RLVDFDFVQAS 490
G L+T G ++G+LG V ER L+P CV F A
Sbjct: 172 ----GDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF 227
Query: 491 CGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKD----RSITVVEGKLKEEFVKGISSGSY 546
CG T ++ G VY G + + QLG P + +++T + K G S G +
Sbjct: 228 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV--GFSGGQH 285
Query: 547 HVAVLTSGGSVYTWGKNANGQLGLGD-SQERETPTFVEALRDRQVESVVCGSSITAAI 603
H + S G Y+ G+ G+LGLG+ ++E+ PT + L V SV CG+S+ A+
Sbjct: 286 HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAV 341
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 166/370 (44%), Gaps = 44/370 (11%)
Query: 263 DVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVS--CPKLVECLSGINVQSVS 320
DV G H ++K G+V+ +G +G LG +++ S P VE V VS
Sbjct: 49 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVS 106
Query: 321 CGEFQTCALTKSGEIYTWG--HNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGE 378
G+ T ALT G ++ WG +N+G + E +S +P ++ LD V V KVA G
Sbjct: 107 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKS-MVPVQV--QLD-VPVVKVASGN 162
Query: 379 WHTAIVSTSGQLFTYGDGTFGVLGH-----------GNLQNVSQPKEV----ESLRG-LK 422
H +++ G L+T G G G LG L+ + PK V RG ++
Sbjct: 163 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVR 222
Query: 423 VKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLV 482
+ CG + T AI + G ++ +G ++ +LG E +P +T
Sbjct: 223 FQDAFCGAYFTFAI-----------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 271
Query: 483 DF--DFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLG-NPKAKDRSITVVEGKLKEEFVK 539
+ +V S G+ TV + GK Y++G A +G+LG A+++SI + +L V
Sbjct: 272 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VS 329
Query: 540 GISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPT--FVEALRDRQVESVVCGS 597
++ G+ +T G V+ WG N QLG G ++ +P + L +R V SV G
Sbjct: 330 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 389
Query: 598 SITAAICLHK 607
T + K
Sbjct: 390 QHTVLLVKDK 399
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCP--KLVECLSGINVQSVSC 321
V +++ GA VTK+G VF WG G + +LG + D P + + L V SVS
Sbjct: 328 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSS 387
Query: 322 GEFQTCALTKSGE 334
G T L K E
Sbjct: 388 GGQHTVLLVKDKE 400
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 174/407 (42%), Gaps = 45/407 (11%)
Query: 190 ADTRCPKNESHRLVTPTYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVD 249
A+ + PK + R+ + L +R+ +L +V++ G +G V Q D
Sbjct: 17 AEQQPPKAKRARI---AFHLELPKRRTVLGNVLVCG------------NGDVGQLGLGED 61
Query: 250 ALLPKLLES-AVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMD--VSCPK 306
L K L A + D +IS G H ++TK G+++ +G +G LG + D S P
Sbjct: 62 ILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPD 121
Query: 307 LVECLSGINVQSVSCGEFQTCALTKSGEIYTWG-----HNNHGADLVGERRSRSHWLPRK 361
L++ L G +S G+ + L + G ++ WG H N G + G +R+
Sbjct: 122 LID-LPG-KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP------- 172
Query: 362 LFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYG---DGTFGVLGHGNLQNVSQPKEVESL 418
D ++G +A G H I++T+G++FT G G G L ++ + + + L
Sbjct: 173 -IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL 231
Query: 419 RGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGH-VDGERKLLPTC 477
R ++ P+ + +S ++ G + +L H G+ L
Sbjct: 232 RPTQLIITRAKPFEAIWATNYCTFMRESQT--QVIWATGLNNFKQLAHETKGKEFALTPI 289
Query: 478 VTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKD--RSITVVEGKLKE 535
T L D + G+ TV LT K +G +G+LG KD T+V+ KL E
Sbjct: 290 KTELKDIRHIAG--GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVK-KLTE 346
Query: 536 EFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFV 582
+ V + G +T G +Y+WG N QLG+GD + P V
Sbjct: 347 KIVS-VGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 160/352 (45%), Gaps = 58/352 (16%)
Query: 281 GEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGI-NVQSVSCGEFQTCALTKSGEIYTWG 339
G V G G G+LG + D+ K + ++GI + +S G LTKSG+IY++G
Sbjct: 43 GNVLVCGNGDVGQLG--LGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFG 100
Query: 340 HNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGD---- 395
N+ GA +G S + L G + ++ G+ H+A + G++F +G
Sbjct: 101 CNDEGA--LGRDTSEDGSESKPDLIDLPG-KALCISAGDSHSACLLEDGRVFAWGSFRDS 157
Query: 396 -GTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLF 454
G G+ GN + ++ + G S+A G H + GK+F
Sbjct: 158 HGNMGLTIDGN-----KRTPIDLMEGTVCCSIASGADHLVILT-----------TAGKVF 201
Query: 455 TWGDADKGRLGHVD----------GERKLL-PT--CVTRLVDFDFVQAS--CGRML---- 495
T G A++G+LG + G+R LL PT +TR F+ + A+ C M
Sbjct: 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQT 261
Query: 496 -TVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSG 554
+ TGL + K K+ ++T ++ +LK+ ++ I+ G +H +LT+
Sbjct: 262 QVIWATGLNNFKQLAHET-------KGKEFALTPIKTELKD--IRHIAGGQHHTVILTTD 312
Query: 555 GSVYTWGKNANGQLGLGDSQE-RETPTFVEALRDRQVESVVCGSSITAAICL 605
G+ G+LGLGD ++ E PT V+ L ++ V SV CG + A+ +
Sbjct: 313 LKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIV-SVGCGEVCSYAVTI 363
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 50/303 (16%)
Query: 220 DVMIWG-----EGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHA 274
+V WG EG+LG Q+K ++ P + + ++ ++ G H
Sbjct: 168 EVYAWGTFRCNEGILG----------FYQDKIKIQKT-PWKVPTFSKYNIVQLAPGKDHI 216
Query: 275 ALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGI-NVQSVSCGEFQTCALTKSG 333
+ +EG VF WG G+ +LG KV L G+ +V+ ++ GE ALTK
Sbjct: 217 LFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDN 276
Query: 334 EIYTWGHNNHGADLVGERRSRSHWL--PRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLF 391
++ +WG N G V E + P++L D V + +A GE H+ I+S G L+
Sbjct: 277 KLVSWGLNQFGQCGVSEDVEDGALVTKPKRL-ALPDNVVIRSIAAGEHHSLILSQDGDLY 335
Query: 392 TYGDGTFGVLG--------------HGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIV 437
+ G +G HG + V P ++ ++ K KSVA G H+ A+
Sbjct: 336 SCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAV- 392
Query: 438 DIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKL-LPTCV--TRLVDFDFVQASCGRM 494
A G ++WG + +G E +PT + T D + + CG
Sbjct: 393 ----------AQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQ 442
Query: 495 LTV 497
+V
Sbjct: 443 FSV 445
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 133/322 (41%), Gaps = 37/322 (11%)
Query: 303 SCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVG--ERRSRSHWLPR 360
S P L E G V ++ + +CAL +GE+Y WG ++G + + + P
Sbjct: 140 SFPPLAE---GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPW 196
Query: 361 KLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRG 420
K+ T + ++A G+ H + G +F +G+G LG ++ G
Sbjct: 197 KV-PTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG 255
Query: 421 LK-VKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLG-HVDGERKLLPTCV 478
L+ VK +A G H A+ K N KL +WG G+ G D E L T
Sbjct: 256 LRHVKYIASGENHCFALT-------KDN----KLVSWGLNQFGQCGVSEDVEDGALVTKP 304
Query: 479 TRLVDFDFV---QASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPK------------AKD 523
RL D V + G ++ L+ G +Y+ G ++G PK K
Sbjct: 305 KRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKA 364
Query: 524 RSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQ-ERETPTFV 582
R++ + K +++GS+H + G Y+WG +GLG + + E PT +
Sbjct: 365 RAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRI 424
Query: 583 E--ALRDRQVESVVCGSSITAA 602
+ A +D + V CG + +
Sbjct: 425 KNTATQDHNIILVGCGGQFSVS 446
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 143/352 (40%), Gaps = 55/352 (15%)
Query: 261 MLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLG---HKVNMDVSCPKLVECL--SGIN 315
M + N KH L + ++FCWG G LG N +V P+L L
Sbjct: 9 MSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAK 68
Query: 316 VQSVSCGEFQTCALTKSGEIYTWGHNNHGA-------------------------DLVGE 350
+ S + G T AL + +++WG N+ GA + E
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNE 128
Query: 351 RRSRSHWLPRKLFDTL-DGVRVSKVACGEWHTAIVSTSGQLFTYGDGTF----GVLG--H 403
S +PR+ F L +G +V ++A + + + ++G+++ + GTF G+LG
Sbjct: 129 LESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAW--GTFRCNEGILGFYQ 186
Query: 404 GNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGR 463
++ P +V + + +A G H + +D G +F WG+ + +
Sbjct: 187 DKIKIQKTPWKVPTFSKYNIVQLAPGKDHI-----LFLDE------EGMVFAWGNGQQNQ 235
Query: 464 LGHVDGERKLLPTCVTRLVDFDFVQ-ASCGRMLTVGLTGLGKVYTMGSAVHGQLG-NPKA 521
LG ER L T R V+ + G LT K+ + G GQ G +
Sbjct: 236 LGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDV 295
Query: 522 KDRSITVVEGKL---KEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGL 570
+D ++ +L ++ I++G +H +L+ G +Y+ G+ ++G+
Sbjct: 296 EDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGI 347
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 616 SCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQ 673
+C C F ++H+C CG FC+ CS K +LTP+ KP RVCD C+N LQ
Sbjct: 71 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN----ALTPSSKKPVRVCDACFNDLQ 124
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 613 DQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKG--KPSRVCDTCYN 670
D C +CR+ FG +KH+C CG FC CS+K S P G K RVC+ CY
Sbjct: 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK----YSTIPKFGIEKEVRVCEPCYE 218
Query: 671 HLQK 674
L +
Sbjct: 219 QLNR 222
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 606 HKSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVC 665
H + + + C QC F R+KH+C NCG FC+ CS+ ++ P+ KP RVC
Sbjct: 11 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELA----LPSYPKPVRVC 66
Query: 666 DTCY 669
D+C+
Sbjct: 67 DSCH 70
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 606 HKSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVC 665
H + + + C QC F R+KH+C NCG FC+ CS+ ++ P+ KP RVC
Sbjct: 18 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELA----LPSYPKPVRVC 73
Query: 666 DTCYNHL 672
D+C+ L
Sbjct: 74 DSCHTLL 80
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 616 SCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQ 673
+C C F ++H+C CG FC+ CS K +LTP+ KP RVCD C+N LQ
Sbjct: 11 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN----ALTPSSKKPVRVCDACFNDLQ 64
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 612 GDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKG--KPSRVCDTCY 669
D C +CR+ F F +KH+C NCG FC C+ K+ P G K RVCD C+
Sbjct: 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCP----LPKYGIEKEVRVCDGCF 214
Query: 670 NHLQK 674
LQ+
Sbjct: 215 AALQR 219
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 54/203 (26%)
Query: 256 LESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGIN 315
+ +A V I+ G H+ L K+GEV WG +DG+ + P E SG++
Sbjct: 59 MPAATQSGVDAIAAGNYHS-LALKDGEVIAWGGNEDGQ--------TTVP--AEARSGVD 107
Query: 316 VQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVA 375
+++ G + + AL K G++ WG ++ G V LD
Sbjct: 108 --AIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSG-------VTALD-------- 149
Query: 376 CGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAA 435
G +TA+ +G + +GD FG + P E +S V VA G +H+ A
Sbjct: 150 -GGVYTALAVKNGGVIAWGDNYFG--------QTTVPAEAQS----GVDDVAGGIFHSLA 196
Query: 436 IVDIMVDRCKSNAIGGKLFTWGD 458
+ D GK+ WGD
Sbjct: 197 LKD------------GKVIAWGD 207
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 503 GKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGK 562
GKV G+ ++GQL P A V I++G+YH L G V WG
Sbjct: 44 GKVLGWGANLNGQLTMPAATQSG------------VDAIAAGNYHSLALKD-GEVIAWGG 90
Query: 563 NANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAICLHKSISVGDQS 615
N +GQ T V A V+++ G+ + A+ K I+ GD S
Sbjct: 91 NEDGQ------------TTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDS 131
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 14/76 (18%)
Query: 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGE 323
V +++ G H+ L K+G+V WG+ + + + P E LSG V +++ GE
Sbjct: 184 VDDVAGGIFHS-LALKDGKVIAWGDNRYKQ--------TTVP--TEALSG--VSAIASGE 230
Query: 324 FQTCALTKSGEIYTWG 339
+ + AL K+G++ WG
Sbjct: 231 WYSLAL-KNGKVIAWG 245
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 538 VKGISSGSYHVAVLTSGGSVYTWGKNANGQLGL 570
V I+ G +H L GG V WG N NGQL +
Sbjct: 28 VDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTM 59
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 54/203 (26%)
Query: 256 LESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGIN 315
+ +A V I+ G H+ L K+GEV WG +DG+ + P E SG++
Sbjct: 57 MPAATQSGVDAIAAGNYHS-LALKDGEVIAWGGNEDGQ--------TTVP--AEARSGVD 105
Query: 316 VQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVA 375
+++ G + + AL K G++ WG ++ G V LD
Sbjct: 106 --AIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSG-------VTALD-------- 147
Query: 376 CGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAA 435
G +TA+ +G + +GD FG + P E +S V VA G +H+ A
Sbjct: 148 -GGVYTALAVKNGGVIAWGDNYFG--------QTTVPAEAQS----GVDDVAGGIFHSLA 194
Query: 436 IVDIMVDRCKSNAIGGKLFTWGD 458
+ D GK+ WGD
Sbjct: 195 LKD------------GKVIAWGD 205
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 503 GKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGK 562
GKV G+ ++GQL P A V I++G+YH L G V WG
Sbjct: 42 GKVLGWGANLNGQLTMPAATQSG------------VDAIAAGNYHSLALKD-GEVIAWGG 88
Query: 563 NANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAICLHKSISVGDQS 615
N +GQ T V A V+++ G+ + A+ K I+ GD S
Sbjct: 89 NEDGQ------------TTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDS 129
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 14/76 (18%)
Query: 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGE 323
V +++ G H+ L K+G+V WG+ + + + P E LSG V +++ GE
Sbjct: 182 VDDVAGGIFHS-LALKDGKVIAWGDNRYKQ--------TTVP--TEALSG--VSAIASGE 228
Query: 324 FQTCALTKSGEIYTWG 339
+ + AL K+G++ WG
Sbjct: 229 WYSLAL-KNGKVIAWG 243
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 538 VKGISSGSYHVAVLTSGGSVYTWGKNANGQLGL 570
V I+ G +H L GG V WG N NGQL +
Sbjct: 26 VDAIAGGYFHGLAL-KGGKVLGWGANLNGQLTM 57
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 613 DQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKG--KPSRVCDTCYN 670
D +C+ C F ++H+C NCG C CS + + P +G +P RVCD CY
Sbjct: 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR----AAIPMRGITEPERVCDACYL 75
Query: 671 HLQKITHSG 679
L+ +G
Sbjct: 76 ALRSSNMAG 84
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 613 DQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKG--KPSRVCDTCYN 670
D +C C F +KH+C +CG FC S+ N+ P+ G +P RVCD+C+
Sbjct: 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS----NSIPLPDLGIYEPVRVCDSCFE 65
Query: 671 HLQKI 675
+ I
Sbjct: 66 DYEFI 70
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 613 DQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHL 672
+ +C C++ F F +++H+C CG FC C +K L K +RVC CY +
Sbjct: 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLE----KEARVCVVCYETI 74
Query: 673 QKITHSGRLL 682
K R++
Sbjct: 75 SKAQAFERMM 84
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 609 ISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTC 668
+ V C C F ++H+C+ CG C CS K L K + ++VCD C
Sbjct: 370 VPVTHVXXCXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY---PLKYLKDRXAKVCDGC 426
Query: 669 YNHLQK 674
+ L+K
Sbjct: 427 FGELKK 432
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 7 IWYSGQK-----EKQL-RLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDL 60
IW +K E QL + + ++ MG RT + + + + FSI++ + +LDL
Sbjct: 42 IWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDL 101
Query: 61 ICKDKVQAESWFLGLRAAI 79
I A+ W GLR I
Sbjct: 102 IAPSPADAQHWVQGLRKII 120
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 617 CSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSR----VCDTCYNHL 672
C+ C F +K+ +C NCG FCS C + K+ +S+ + R VC +C L
Sbjct: 17 CTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTL 76
Query: 673 QK 674
K
Sbjct: 77 SK 78
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From Mus
Musculus
Length = 88
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 614 QSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKP-SRVCDTCYNHL 672
+S C C + F +K++ C NCG FC+ C + ++L P G +VC C+ L
Sbjct: 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC----LSFSALVPRAGNTQQKVCKQCHTIL 64
Query: 673 QK 674
+
Sbjct: 65 TR 66
>pdb|1Y02|A Chain A, Crystal Structure Of A Fyve-type Domain From Caspase
Regulator Carp2
Length = 120
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 611 VGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYN 670
G + SC C F +K C +C +FC CS++ G R+C C
Sbjct: 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ----------VGNGPRLCLLCQR 65
Query: 671 HLQKITHSGRLLKQENQSPRNLLNLQGSLSEEVKEEKGALTPSRGQ 716
L+K + + R+ L+L +E +E++ + GQ
Sbjct: 66 FRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQ 111
>pdb|2J3S|A Chain A, Crystal Structure Of The Human Filamin A Ig Domains 19 To
21
pdb|2J3S|B Chain B, Crystal Structure Of The Human Filamin A Ig Domains 19 To
21
Length = 288
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 948 RTEPQQKGTKASKLEYAEQYEPGIYITFTTLPSGQKGLKRVR 989
R P + GT ++Y Q+ PG FT P G+ G +VR
Sbjct: 160 RFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVR 201
>pdb|3TNU|B Chain B, Heterocomplex Of Coil 2b Domains Of Human Intermediate
Filament Proteins, Keratin 5 (Krt5) And Keratin 14
(Krt14)
Length = 129
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAR 849
+ ++SE N+M +QRLR + N++KQC + + +Q+ E A AR
Sbjct: 35 KHEISEMNRM----IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDAR 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,021,031
Number of Sequences: 62578
Number of extensions: 1174184
Number of successful extensions: 3252
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3007
Number of HSP's gapped (non-prelim): 76
length of query: 1030
length of database: 14,973,337
effective HSP length: 109
effective length of query: 921
effective length of database: 8,152,335
effective search space: 7508300535
effective search space used: 7508300535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)