Query 001683
Match_columns 1030
No_of_seqs 767 out of 2879
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 7.5E-46 1.6E-50 414.8 28.8 368 212-606 61-465 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 5.4E-39 1.2E-43 359.8 25.9 319 271-606 58-410 (476)
3 KOG1427 Uncharacterized conser 100.0 2.2E-39 4.7E-44 340.7 18.8 361 218-606 19-399 (443)
4 KOG1427 Uncharacterized conser 100.0 4.9E-35 1.1E-39 308.0 15.9 311 211-554 69-399 (443)
5 PF08381 BRX: Transcription fa 100.0 1.2E-30 2.7E-35 214.1 6.1 57 960-1016 3-59 (59)
6 KOG0783 Uncharacterized conser 99.9 6E-25 1.3E-29 254.9 15.4 305 276-607 137-450 (1267)
7 KOG0783 Uncharacterized conser 99.9 7.7E-25 1.7E-29 254.0 15.7 306 212-555 135-450 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 3.2E-20 7E-25 220.8 23.9 367 193-602 472-891 (3738)
9 KOG1428 Inhibitor of type V ad 99.8 6E-18 1.3E-22 201.9 19.9 249 262-531 569-870 (3738)
10 cd01248 PH_PLC Phospholipase C 99.5 3.9E-14 8.4E-19 136.9 5.7 77 2-78 31-115 (115)
11 PF13713 BRX_N: Transcription 99.3 5.2E-13 1.1E-17 101.6 2.4 33 849-881 1-33 (39)
12 PF01363 FYVE: FYVE zinc finge 99.2 3.8E-12 8.3E-17 111.6 0.8 68 606-673 1-68 (69)
13 KOG0169 Phosphoinositide-speci 99.1 1.5E-11 3.3E-16 146.3 2.2 105 2-125 42-149 (746)
14 PF00415 RCC1: Regulator of ch 99.1 1.2E-10 2.5E-15 95.7 5.1 50 554-603 1-51 (51)
15 KOG0941 E3 ubiquitin protein l 99.0 2.1E-12 4.5E-17 154.0 -9.7 191 252-503 4-197 (850)
16 smart00064 FYVE Protein presen 99.0 1.7E-10 3.6E-15 101.0 4.0 66 606-673 2-67 (68)
17 KOG1729 FYVE finger containing 99.0 8E-11 1.7E-15 129.3 1.3 69 603-674 157-226 (288)
18 PF00415 RCC1: Regulator of ch 99.0 9.2E-10 2E-14 90.3 5.6 50 280-329 1-51 (51)
19 PF12814 Mcp5_PH: Meiotic cell 98.9 1.6E-09 3.4E-14 106.1 7.5 76 1-81 39-123 (123)
20 KOG1818 Membrane trafficking a 98.9 3.8E-10 8.2E-15 133.4 3.3 65 612-678 163-227 (634)
21 PTZ00303 phosphatidylinositol 98.9 1.5E-09 3.2E-14 127.0 4.3 74 603-676 448-533 (1374)
22 KOG1819 FYVE finger-containing 98.8 1.5E-09 3.2E-14 121.7 1.7 72 598-671 885-961 (990)
23 KOG0941 E3 ubiquitin protein l 98.8 1.5E-10 3.2E-15 138.5 -6.5 183 367-555 12-197 (850)
24 PF13540 RCC1_2: Regulator of 98.7 2.1E-08 4.6E-13 73.3 4.5 30 538-567 1-30 (30)
25 PF13540 RCC1_2: Regulator of 98.6 5.2E-08 1.1E-12 71.3 5.0 30 264-293 1-30 (30)
26 cd00065 FYVE FYVE domain; Zinc 98.6 2.5E-08 5.3E-13 84.1 3.0 55 614-670 2-56 (57)
27 KOG1841 Smad anchor for recept 97.8 5.6E-06 1.2E-10 102.1 1.0 71 604-674 547-620 (1287)
28 KOG1842 FYVE finger-containing 97.8 3.6E-06 7.9E-11 95.0 -0.9 68 607-674 173-260 (505)
29 KOG1264 Phospholipase C [Lipid 97.6 2E-05 4.4E-10 94.0 1.5 70 14-83 61-134 (1267)
30 KOG1843 Uncharacterized conser 97.5 3.1E-05 6.6E-10 86.9 1.1 68 605-673 151-219 (473)
31 KOG1409 Uncharacterized conser 97.4 4.5E-05 9.7E-10 84.2 0.9 81 592-677 255-354 (404)
32 KOG4424 Predicted Rho/Rac guan 96.7 0.00061 1.3E-08 80.0 1.3 81 611-700 412-493 (623)
33 cd01244 PH_RasGAP_CG9209 RAS_G 95.0 0.085 1.8E-06 49.8 7.4 65 3-77 30-97 (98)
34 smart00233 PH Pleckstrin homol 94.7 0.14 3E-06 46.0 8.0 67 4-79 28-101 (102)
35 PF00169 PH: PH domain; Inter 94.6 0.16 3.4E-06 46.4 8.2 71 4-80 27-104 (104)
36 KOG1811 Predicted Zn2+-binding 93.5 0.009 1.9E-07 70.3 -3.0 65 605-671 313-382 (1141)
37 cd01238 PH_Tec Tec pleckstrin 93.2 0.31 6.7E-06 46.5 7.5 70 3-77 30-105 (106)
38 cd01235 PH_SETbf Set binding f 93.2 0.35 7.7E-06 45.1 7.8 72 3-79 26-101 (101)
39 cd00821 PH Pleckstrin homology 92.2 0.26 5.6E-06 43.7 5.3 51 16-77 45-95 (96)
40 cd01264 PH_melted Melted pleck 92.0 0.54 1.2E-05 44.6 7.3 66 4-77 29-99 (101)
41 cd01233 Unc104 Unc-104 pleckst 90.9 0.74 1.6E-05 43.4 7.1 69 3-80 27-99 (100)
42 PF02318 FYVE_2: FYVE-type zin 89.9 0.19 4.1E-06 49.0 2.1 51 613-672 53-104 (118)
43 PF11725 AvrE: Pathogenicity f 89.7 4 8.7E-05 54.6 14.1 253 315-607 490-815 (1774)
44 cd01236 PH_outspread Outspread 89.5 1.3 2.7E-05 42.4 7.3 51 16-77 52-102 (104)
45 cd01251 PH_centaurin_alpha Cen 89.3 1.5 3.1E-05 41.7 7.6 70 3-81 25-102 (103)
46 KOG0230 Phosphatidylinositol-4 89.1 0.25 5.3E-06 64.6 2.8 47 614-673 5-51 (1598)
47 cd01265 PH_PARIS-1 PARIS-1 ple 87.8 2 4.4E-05 40.1 7.4 61 4-78 29-93 (95)
48 KOG4693 Uncharacterized conser 87.3 17 0.00036 40.2 14.7 63 323-394 80-146 (392)
49 PF03962 Mnd1: Mnd1 family; I 86.7 2.1 4.7E-05 45.2 7.6 66 810-876 61-126 (188)
50 cd01266 PH_Gab Gab (Grb2-assoc 86.7 2.6 5.6E-05 40.2 7.6 67 5-78 37-107 (108)
51 KOG2999 Regulator of Rac1, req 85.9 0.12 2.5E-06 61.2 -2.4 67 15-81 590-661 (713)
52 PF07888 CALCOCO1: Calcium bin 85.6 3.7 8.1E-05 49.7 9.8 46 799-844 152-197 (546)
53 cd00900 PH-like Pleckstrin hom 85.4 3.3 7.2E-05 36.7 7.4 52 16-77 46-98 (99)
54 KOG0943 Predicted ubiquitin-pr 84.9 0.14 3E-06 64.3 -2.5 132 261-398 373-507 (3015)
55 PF12718 Tropomyosin_1: Tropom 84.2 6.9 0.00015 39.6 9.6 61 799-860 16-76 (143)
56 cd01246 PH_oxysterol_bp Oxyste 83.9 3.9 8.4E-05 36.9 7.1 33 44-77 58-90 (91)
57 cd01252 PH_cytohesin Cytohesin 83.5 4.2 9E-05 39.9 7.6 70 3-83 25-117 (125)
58 PF03904 DUF334: Domain of unk 83.4 7.7 0.00017 41.7 9.8 61 810-872 42-109 (230)
59 KOG3669 Uncharacterized conser 82.7 46 0.00099 40.5 16.6 107 269-393 190-299 (705)
60 PF12718 Tropomyosin_1: Tropom 82.7 11 0.00023 38.2 10.2 77 799-875 37-130 (143)
61 PRK15396 murein lipoprotein; P 82.3 3.7 8.1E-05 37.1 6.0 42 811-856 25-66 (78)
62 PF12325 TMF_TATA_bd: TATA ele 81.9 9.6 0.00021 37.4 9.2 66 800-876 19-84 (120)
63 PF02183 HALZ: Homeobox associ 81.7 2.3 4.9E-05 34.4 4.0 31 798-828 13-43 (45)
64 KOG0943 Predicted ubiquitin-pr 81.6 0.18 3.9E-06 63.4 -3.3 129 313-459 373-505 (3015)
65 PHA01750 hypothetical protein 80.8 3.6 7.7E-05 35.4 5.0 37 806-842 37-73 (75)
66 TIGR02449 conserved hypothetic 80.8 12 0.00025 32.8 8.3 60 813-872 2-61 (65)
67 KOG3669 Uncharacterized conser 80.7 55 0.0012 39.8 16.3 70 263-338 228-299 (705)
68 COG4257 Vgb Streptogramin lyas 80.6 45 0.00098 37.3 14.5 137 211-393 65-205 (353)
69 KOG4693 Uncharacterized conser 80.5 33 0.00072 38.0 13.4 17 271-288 80-96 (392)
70 PF11725 AvrE: Pathogenicity f 80.1 3.9 8.4E-05 54.7 7.4 72 483-555 743-815 (1774)
71 PF04849 HAP1_N: HAP1 N-termin 80.0 6.9 0.00015 44.2 8.5 54 810-877 233-286 (306)
72 cd01254 PH_PLD Phospholipase D 79.8 6.8 0.00015 38.3 7.5 75 3-77 42-120 (121)
73 COG3074 Uncharacterized protei 78.9 5.3 0.00012 34.8 5.5 37 799-835 27-63 (79)
74 KOG0230 Phosphatidylinositol-4 78.5 1.3 2.8E-05 58.3 2.5 34 609-644 92-125 (1598)
75 PF02403 Seryl_tRNA_N: Seryl-t 78.1 13 0.00028 35.4 8.7 69 808-876 26-97 (108)
76 PF10186 Atg14: UV radiation r 77.8 16 0.00034 40.9 10.8 44 799-842 65-108 (302)
77 cd01260 PH_CNK Connector enhan 77.4 7.5 0.00016 36.0 6.8 62 4-77 30-95 (96)
78 PF11559 ADIP: Afadin- and alp 76.9 25 0.00053 35.7 10.9 58 810-867 65-122 (151)
79 cd01256 PH_dynamin Dynamin ple 76.8 6.5 0.00014 37.0 5.9 64 3-75 28-101 (110)
80 PF02403 Seryl_tRNA_N: Seryl-t 75.7 15 0.00032 35.0 8.4 69 809-877 34-105 (108)
81 PF10211 Ax_dynein_light: Axon 75.5 15 0.00033 38.9 9.2 36 809-844 125-160 (189)
82 cd01250 PH_centaurin Centaurin 75.5 9.8 0.00021 34.5 6.9 32 43-76 61-92 (94)
83 PF06005 DUF904: Protein of un 75.1 21 0.00046 31.8 8.5 58 801-872 15-72 (72)
84 KOG1900 Nuclear pore complex, 74.9 69 0.0015 42.7 16.1 217 275-510 93-339 (1311)
85 PRK11637 AmiB activator; Provi 74.8 19 0.00041 43.0 10.9 35 809-843 59-93 (428)
86 cd01257 PH_IRS Insulin recepto 74.6 9.5 0.00021 36.2 6.7 61 5-77 31-100 (101)
87 cd01245 PH_RasGAP_CG5898 RAS G 74.3 11 0.00025 35.5 7.1 65 3-77 29-97 (98)
88 PF04977 DivIC: Septum formati 74.3 7.3 0.00016 34.6 5.6 43 808-850 21-63 (80)
89 PF13863 DUF4200: Domain of un 73.7 37 0.0008 33.1 10.9 74 802-875 23-96 (126)
90 PF06428 Sec2p: GDP/GTP exchan 73.4 17 0.00036 34.6 7.9 65 812-876 2-67 (100)
91 KOG4403 Cell surface glycoprot 73.1 22 0.00047 41.5 10.0 70 806-875 304-419 (575)
92 PF04728 LPP: Lipoprotein leuc 72.8 15 0.00033 31.1 6.6 41 812-856 4-44 (56)
93 PRK11637 AmiB activator; Provi 72.8 22 0.00049 42.4 10.9 29 812-840 55-83 (428)
94 PF15619 Lebercilin: Ciliary p 72.1 28 0.00061 37.1 10.2 65 812-876 119-187 (194)
95 PF04111 APG6: Autophagy prote 72.0 30 0.00066 39.6 11.2 75 802-876 48-129 (314)
96 cd01222 PH_clg Clg (common-sit 71.8 7.9 0.00017 36.6 5.3 38 42-79 57-95 (97)
97 PF11932 DUF3450: Protein of u 71.4 33 0.00071 37.9 11.0 44 799-842 44-87 (251)
98 TIGR03752 conj_TIGR03752 integ 70.7 21 0.00045 42.7 9.5 65 810-874 72-144 (472)
99 PF11559 ADIP: Afadin- and alp 70.6 37 0.0008 34.4 10.4 32 808-839 56-87 (151)
100 PF07106 TBPIP: Tat binding pr 70.2 10 0.00022 39.3 6.3 34 809-842 77-110 (169)
101 KOG2391 Vacuolar sorting prote 69.9 9.8 0.00021 43.2 6.3 24 803-826 217-240 (365)
102 PRK14161 heat shock protein Gr 69.5 24 0.00053 37.0 8.9 69 798-867 13-81 (178)
103 PLN02153 epithiospecifier prot 69.4 2.1E+02 0.0046 32.7 26.3 16 547-562 307-322 (341)
104 KOG0646 WD40 repeat protein [G 69.2 1.3E+02 0.0029 35.8 15.3 25 485-509 221-245 (476)
105 PF07569 Hira: TUP1-like enhan 68.7 18 0.00039 39.2 8.1 76 313-394 12-93 (219)
106 PF09728 Taxilin: Myosin-like 68.5 35 0.00075 39.1 10.6 77 802-878 133-220 (309)
107 COG1579 Zn-ribbon protein, pos 67.6 42 0.00091 36.9 10.5 70 808-880 107-176 (239)
108 PF14197 Cep57_CLD_2: Centroso 67.3 63 0.0014 28.7 9.6 61 809-872 3-66 (69)
109 cd01247 PH_GPBP Goodpasture an 66.8 9.4 0.0002 35.4 4.7 34 43-77 57-90 (91)
110 PF06785 UPF0242: Uncharacteri 66.3 17 0.00037 41.1 7.2 52 799-850 129-180 (401)
111 cd01220 PH_CDEP Chondrocyte-de 65.8 8.9 0.00019 36.2 4.4 34 45-80 65-98 (99)
112 KOG0646 WD40 repeat protein [G 65.7 2E+02 0.0043 34.4 15.8 151 202-393 87-244 (476)
113 PRK02119 hypothetical protein; 65.4 31 0.00067 30.9 7.4 32 811-842 2-33 (73)
114 PF04156 IncA: IncA protein; 65.4 57 0.0012 34.2 10.9 23 851-873 128-150 (191)
115 PHA03098 kelch-like protein; P 65.2 1.5E+02 0.0033 36.1 16.3 17 324-341 335-351 (534)
116 PF10168 Nup88: Nuclear pore c 65.2 44 0.00096 42.6 11.6 78 799-876 538-623 (717)
117 KOG1029 Endocytic adaptor prot 65.2 20 0.00043 44.7 8.0 47 796-842 471-517 (1118)
118 PRK00846 hypothetical protein; 64.8 56 0.0012 29.6 8.9 54 817-877 12-65 (77)
119 KOG0977 Nuclear envelope prote 64.7 28 0.0006 42.5 9.2 77 796-872 98-174 (546)
120 TIGR00414 serS seryl-tRNA synt 64.5 31 0.00067 41.2 9.6 37 982-1018 273-317 (418)
121 PF03961 DUF342: Protein of un 64.4 24 0.00052 42.5 8.8 31 809-839 332-362 (451)
122 KOG4657 Uncharacterized conser 64.2 26 0.00056 37.7 7.7 58 799-856 71-141 (246)
123 PF05278 PEARLI-4: Arabidopsis 64.1 39 0.00085 37.6 9.4 81 799-879 148-240 (269)
124 PRK14160 heat shock protein Gr 63.9 43 0.00093 36.2 9.5 66 799-865 56-121 (211)
125 PF01486 K-box: K-box region; 63.5 63 0.0014 30.4 9.7 68 803-872 11-87 (100)
126 KOG2391 Vacuolar sorting prote 63.2 1.2E+02 0.0025 35.0 12.9 47 799-845 234-280 (365)
127 KOG4441 Proteins containing BT 63.1 1.1E+02 0.0024 38.1 14.4 57 498-562 471-530 (571)
128 PRK09973 putative outer membra 62.9 20 0.00044 33.0 5.8 43 811-857 24-66 (85)
129 KOG3551 Syntrophins (type beta 62.8 9.5 0.00021 43.8 4.5 46 35-80 227-272 (506)
130 COG0576 GrpE Molecular chapero 62.6 39 0.00085 35.9 9.0 61 806-867 38-98 (193)
131 PF10422 LRS4: Monopolin compl 62.4 2.5 5.5E-05 45.8 0.0 63 805-870 52-114 (249)
132 KOG0612 Rho-associated, coiled 62.1 39 0.00084 44.5 10.1 48 832-879 487-534 (1317)
133 KOG1274 WD40 repeat protein [G 62.0 97 0.0021 39.7 13.2 72 321-398 13-88 (933)
134 PF07888 CALCOCO1: Calcium bin 61.6 55 0.0012 40.1 10.9 42 799-840 159-200 (546)
135 KOG1760 Molecular chaperone Pr 61.4 79 0.0017 31.1 9.7 66 808-873 34-118 (131)
136 PRK05431 seryl-tRNA synthetase 61.2 27 0.00059 41.7 8.4 66 810-875 27-95 (425)
137 KOG4460 Nuclear pore complex, 60.4 68 0.0015 38.8 10.9 73 802-874 557-644 (741)
138 PRK15422 septal ring assembly 59.6 24 0.00051 31.9 5.5 37 799-835 27-63 (79)
139 PF11068 YlqD: YlqD protein; 59.2 1.1E+02 0.0023 30.7 10.7 63 814-880 23-93 (131)
140 PRK14143 heat shock protein Gr 59.0 55 0.0012 36.1 9.5 65 802-867 65-129 (238)
141 KOG0291 WD40-repeat-containing 58.9 4.9E+02 0.011 33.2 28.0 322 211-598 100-478 (893)
142 PF04156 IncA: IncA protein; 58.8 56 0.0012 34.2 9.5 22 807-828 91-112 (191)
143 KOG3799 Rab3 effector RIM1 and 58.5 3.9 8.4E-05 40.1 0.5 56 611-673 62-118 (169)
144 PRK14148 heat shock protein Gr 58.2 61 0.0013 34.6 9.4 64 803-867 39-102 (195)
145 KOG0241 Kinesin-like protein [ 57.7 41 0.0009 42.9 9.0 75 799-876 359-434 (1714)
146 TIGR03185 DNA_S_dndD DNA sulfu 57.7 52 0.0011 41.6 10.4 36 808-843 432-467 (650)
147 PRK14154 heat shock protein Gr 57.7 50 0.0011 35.6 8.7 59 808-867 56-114 (208)
148 PRK14153 heat shock protein Gr 57.5 39 0.00084 36.0 7.8 67 800-867 27-95 (194)
149 KOG2059 Ras GTPase-activating 57.4 14 0.00031 45.6 5.0 71 5-85 597-670 (800)
150 PRK09039 hypothetical protein; 57.4 68 0.0015 37.3 10.5 38 809-846 135-172 (343)
151 PF09304 Cortex-I_coil: Cortex 57.0 1.5E+02 0.0032 28.6 10.6 49 798-846 24-72 (107)
152 PRK14155 heat shock protein Gr 56.8 45 0.00099 35.9 8.3 42 807-848 16-57 (208)
153 PF14643 DUF4455: Domain of un 56.7 58 0.0013 39.5 10.2 51 826-882 80-130 (473)
154 PLN02678 seryl-tRNA synthetase 56.7 30 0.00064 41.6 7.6 67 810-876 32-101 (448)
155 TIGR00414 serS seryl-tRNA synt 56.6 44 0.00095 39.9 9.0 67 810-876 29-99 (418)
156 PF10186 Atg14: UV radiation r 56.5 80 0.0017 35.2 10.8 45 799-843 72-116 (302)
157 KOG4196 bZIP transcription fac 56.4 25 0.00053 34.7 5.5 36 799-834 76-111 (135)
158 PF10473 CENP-F_leu_zip: Leuci 56.4 64 0.0014 32.6 8.7 67 808-874 63-140 (140)
159 PF06364 DUF1068: Protein of u 56.1 32 0.00069 35.4 6.5 30 833-862 104-136 (176)
160 PRK05431 seryl-tRNA synthetase 55.9 55 0.0012 39.1 9.7 70 809-878 33-105 (425)
161 KOG0982 Centrosomal protein Nu 55.8 74 0.0016 37.4 10.0 78 799-876 299-390 (502)
162 PF14662 CCDC155: Coiled-coil 55.7 61 0.0013 34.3 8.7 44 799-842 10-53 (193)
163 PHA02713 hypothetical protein; 55.5 3.1E+02 0.0066 34.1 16.4 20 322-341 341-360 (557)
164 PF10883 DUF2681: Protein of u 55.4 39 0.00086 31.3 6.4 50 809-866 28-79 (87)
165 PF01519 DUF16: Protein of unk 55.2 68 0.0015 30.6 8.0 48 815-876 50-97 (102)
166 TIGR02338 gimC_beta prefoldin, 55.0 1E+02 0.0022 29.6 9.7 35 809-843 8-42 (110)
167 PHA02713 hypothetical protein; 54.8 2.6E+02 0.0056 34.7 15.6 18 378-395 342-359 (557)
168 KOG1729 FYVE finger containing 54.7 4 8.7E-05 45.9 -0.0 65 607-671 13-81 (288)
169 PF05377 FlaC_arch: Flagella a 54.3 41 0.00089 28.5 5.7 39 809-847 5-43 (55)
170 COG0497 RecN ATPase involved i 54.2 50 0.0011 40.6 9.0 48 824-873 341-388 (557)
171 PRK14156 heat shock protein Gr 54.2 54 0.0012 34.4 8.1 58 809-867 32-89 (177)
172 PRK00888 ftsB cell division pr 54.2 31 0.00067 33.1 5.9 32 808-839 31-62 (105)
173 PF09304 Cortex-I_coil: Cortex 54.0 1.2E+02 0.0025 29.3 9.4 57 796-853 29-85 (107)
174 PLN02320 seryl-tRNA synthetase 53.9 24 0.00053 42.8 6.3 37 982-1018 334-378 (502)
175 cd01219 PH_FGD FGD (faciogenit 53.7 19 0.00042 33.9 4.4 35 44-80 66-100 (101)
176 PF07798 DUF1640: Protein of u 53.7 52 0.0011 34.4 8.0 18 827-844 122-139 (177)
177 PF13935 Ead_Ea22: Ead/Ea22-li 53.6 78 0.0017 31.8 8.9 60 808-867 71-133 (139)
178 PF05957 DUF883: Bacterial pro 53.3 90 0.002 29.0 8.8 62 808-875 2-64 (94)
179 PF00038 Filament: Intermediat 53.0 85 0.0018 35.6 10.3 69 799-867 63-138 (312)
180 PF11932 DUF3450: Protein of u 52.9 1.1E+02 0.0024 33.8 10.9 30 810-839 48-77 (251)
181 PLN02153 epithiospecifier prot 52.8 4E+02 0.0087 30.4 22.1 17 324-341 25-41 (341)
182 PRK14162 heat shock protein Gr 52.7 76 0.0016 33.9 9.0 60 807-867 42-101 (194)
183 PRK10869 recombination and rep 52.7 47 0.001 41.2 8.7 63 811-873 320-387 (553)
184 PRK00409 recombination and DNA 52.3 75 0.0016 41.1 10.7 13 64-76 39-51 (782)
185 PF10168 Nup88: Nuclear pore c 52.2 60 0.0013 41.5 9.6 25 314-338 147-176 (717)
186 COG2433 Uncharacterized conser 52.1 75 0.0016 39.1 9.8 42 813-854 431-472 (652)
187 PF06785 UPF0242: Uncharacteri 51.9 90 0.0019 35.6 9.7 59 800-858 85-149 (401)
188 COG1340 Uncharacterized archae 51.8 1.2E+02 0.0026 34.3 10.8 40 837-876 205-244 (294)
189 PF01920 Prefoldin_2: Prefoldi 51.8 1.2E+02 0.0026 28.2 9.6 31 811-841 5-35 (106)
190 PF13851 GAS: Growth-arrest sp 51.7 1.4E+02 0.0031 31.9 11.1 77 799-875 88-172 (201)
191 PRK14158 heat shock protein Gr 51.6 92 0.002 33.2 9.4 64 803-867 39-102 (194)
192 PF08317 Spc7: Spc7 kinetochor 51.4 44 0.00096 38.4 7.7 33 812-844 231-263 (325)
193 TIGR01562 FdhE formate dehydro 51.4 8.2 0.00018 43.9 1.7 74 594-676 189-266 (305)
194 PF08317 Spc7: Spc7 kinetochor 51.2 65 0.0014 37.1 9.0 36 808-843 167-202 (325)
195 TIGR03752 conj_TIGR03752 integ 51.0 59 0.0013 39.0 8.6 41 799-839 54-94 (472)
196 smart00030 CLb CLUSTERIN Beta 50.9 61 0.0013 34.4 7.7 55 808-862 19-80 (206)
197 PF03904 DUF334: Domain of unk 50.9 1E+02 0.0023 33.4 9.6 84 799-883 45-143 (230)
198 PF04841 Vps16_N: Vps16, N-ter 50.8 5E+02 0.011 30.9 18.0 70 263-340 82-154 (410)
199 cd01242 PH_ROK Rok (Rho- assoc 50.8 20 0.00044 34.6 3.9 62 17-80 50-111 (112)
200 PF13094 CENP-Q: CENP-Q, a CEN 50.7 71 0.0015 32.7 8.4 15 862-876 71-85 (160)
201 PF04728 LPP: Lipoprotein leuc 50.7 52 0.0011 28.0 5.9 35 808-842 7-41 (56)
202 PRK14139 heat shock protein Gr 50.4 86 0.0019 33.2 8.9 60 807-867 35-94 (185)
203 PLN02320 seryl-tRNA synthetase 50.2 70 0.0015 39.0 9.3 32 811-842 93-124 (502)
204 PRK08475 F0F1 ATP synthase sub 50.0 1.4E+02 0.003 30.9 10.4 58 798-855 47-104 (167)
205 PRK03564 formate dehydrogenase 49.9 9.1 0.0002 43.5 1.8 72 594-675 192-265 (309)
206 PF07851 TMPIT: TMPIT-like pro 49.8 72 0.0016 36.7 8.8 29 850-878 65-93 (330)
207 PRK14141 heat shock protein Gr 49.7 72 0.0016 34.4 8.3 57 809-866 36-92 (209)
208 PF13815 Dzip-like_N: Iguana/D 49.6 31 0.00068 33.6 5.2 34 802-835 71-104 (118)
209 KOG4552 Vitamin-D-receptor int 49.6 70 0.0015 34.0 7.9 53 812-867 68-120 (272)
210 KOG0976 Rho/Rac1-interacting s 49.5 81 0.0017 39.8 9.5 66 807-879 95-160 (1265)
211 PF10458 Val_tRNA-synt_C: Valy 49.1 36 0.00077 29.7 5.0 52 821-872 7-65 (66)
212 KOG4441 Proteins containing BT 49.1 1.8E+02 0.0038 36.3 12.9 56 450-510 475-530 (571)
213 PF15035 Rootletin: Ciliary ro 49.0 41 0.00089 35.5 6.3 45 799-843 90-134 (182)
214 TIGR01035 hemA glutamyl-tRNA r 49.0 51 0.0011 39.3 8.0 77 799-875 312-400 (417)
215 PF10473 CENP-F_leu_zip: Leuci 48.7 94 0.002 31.4 8.5 40 810-849 9-48 (140)
216 KOG2264 Exostosin EXT1L [Signa 48.7 85 0.0018 38.1 9.3 74 799-879 81-154 (907)
217 PF07407 Seadorna_VP6: Seadorn 48.4 47 0.001 37.6 6.8 24 801-824 36-59 (420)
218 TIGR01069 mutS2 MutS2 family p 48.3 92 0.002 40.2 10.5 26 810-835 531-556 (771)
219 KOG0804 Cytoplasmic Zn-finger 48.3 1.1E+02 0.0024 36.4 10.0 43 801-843 351-400 (493)
220 PF03310 Cauli_DNA-bind: Cauli 48.3 87 0.0019 30.8 7.8 22 848-869 50-71 (121)
221 PF13805 Pil1: Eisosome compon 48.1 1.3E+02 0.0027 33.8 10.1 62 814-876 148-214 (271)
222 PF12325 TMF_TATA_bd: TATA ele 48.1 1.7E+02 0.0037 28.8 10.0 61 796-856 36-99 (120)
223 PRK14151 heat shock protein Gr 47.9 85 0.0019 33.0 8.4 59 808-867 24-82 (176)
224 PF05103 DivIVA: DivIVA protei 47.8 4.9 0.00011 39.5 -0.7 38 800-837 21-58 (131)
225 cd01223 PH_Vav Vav pleckstrin 47.6 31 0.00068 33.7 4.7 37 45-81 77-113 (116)
226 COG2900 SlyX Uncharacterized p 47.5 1.4E+02 0.0031 26.7 8.2 57 813-876 3-59 (72)
227 PF00261 Tropomyosin: Tropomyo 47.3 46 0.00099 36.5 6.7 37 810-846 28-64 (237)
228 PRK04406 hypothetical protein; 47.2 1.4E+02 0.0031 26.8 8.6 12 862-873 48-59 (75)
229 PRK14131 N-acetylneuraminic ac 47.1 5.2E+02 0.011 30.1 17.0 17 379-395 131-147 (376)
230 PF13851 GAS: Growth-arrest sp 47.0 1.3E+02 0.0028 32.3 9.9 70 799-872 36-105 (201)
231 PF04508 Pox_A_type_inc: Viral 46.8 18 0.0004 25.1 2.1 18 811-828 1-18 (23)
232 COG3599 DivIVA Cell division i 46.8 1.3E+02 0.0027 32.7 9.7 68 799-872 32-104 (212)
233 PRK13454 F0F1 ATP synthase sub 46.0 1.1E+02 0.0023 32.2 8.9 22 836-857 109-130 (181)
234 PF07246 Phlebovirus_NSM: Phle 45.8 69 0.0015 35.5 7.6 65 803-876 167-232 (264)
235 COG3883 Uncharacterized protei 45.8 1.1E+02 0.0024 34.1 9.3 62 810-878 44-105 (265)
236 PF03962 Mnd1: Mnd1 family; I 45.8 1.1E+02 0.0024 32.5 9.0 70 809-879 67-136 (188)
237 PF09744 Jnk-SapK_ap_N: JNK_SA 45.5 1E+02 0.0022 31.9 8.3 29 806-834 84-112 (158)
238 PF15030 DUF4527: Protein of u 45.2 81 0.0018 34.4 7.7 14 811-824 16-29 (277)
239 PF07926 TPR_MLP1_2: TPR/MLP1/ 45.0 2.1E+02 0.0046 28.4 10.4 69 802-870 8-76 (132)
240 PRK14140 heat shock protein Gr 45.0 1.4E+02 0.003 31.9 9.5 58 809-867 42-99 (191)
241 PF01025 GrpE: GrpE; InterPro 44.9 35 0.00077 34.9 5.1 47 802-848 9-55 (165)
242 PF05622 HOOK: HOOK protein; 44.8 7.2 0.00016 49.7 0.0 78 799-876 276-379 (713)
243 PF07798 DUF1640: Protein of u 44.8 2E+02 0.0043 30.1 10.7 61 819-879 74-139 (177)
244 COG4345 Uncharacterized protei 44.7 78 0.0017 32.6 7.2 51 821-871 121-171 (181)
245 PHA03098 kelch-like protein; P 44.7 3.5E+02 0.0075 33.1 14.6 17 493-510 381-397 (534)
246 PRK14145 heat shock protein Gr 44.4 1.5E+02 0.0032 31.8 9.6 61 806-867 47-107 (196)
247 PF07926 TPR_MLP1_2: TPR/MLP1/ 44.2 2.5E+02 0.0054 27.9 10.8 68 808-875 7-74 (132)
248 COG1340 Uncharacterized archae 44.0 1.1E+02 0.0025 34.5 9.0 51 800-850 37-87 (294)
249 PHA02047 phage lambda Rz1-like 43.9 1.4E+02 0.003 28.1 8.0 28 817-844 33-60 (101)
250 PF06092 DUF943: Enterobacteri 43.8 9 0.0002 39.3 0.5 27 995-1021 51-77 (157)
251 KOG4603 TBP-1 interacting prot 43.8 1.1E+02 0.0024 31.7 8.1 32 808-839 83-114 (201)
252 PF02646 RmuC: RmuC family; I 43.5 85 0.0018 35.8 8.3 33 843-875 132-164 (304)
253 smart00502 BBC B-Box C-termina 43.4 2.6E+02 0.0056 26.4 10.7 43 799-841 9-51 (127)
254 KOG0649 WD40 repeat protein [G 43.4 5E+02 0.011 28.8 18.9 115 212-339 25-142 (325)
255 PRK02793 phi X174 lysis protei 43.3 1.5E+02 0.0034 26.4 8.1 15 862-876 45-59 (72)
256 PF03908 Sec20: Sec20; InterP 43.2 1.7E+02 0.0037 27.1 8.9 62 796-868 4-65 (92)
257 PRK10884 SH3 domain-containing 43.0 2.2E+02 0.0047 30.7 10.8 29 808-836 97-125 (206)
258 PRK14146 heat shock protein Gr 42.9 1.1E+02 0.0023 33.3 8.5 59 808-867 58-116 (215)
259 KOG2106 Uncharacterized conser 42.9 7.1E+02 0.015 30.4 21.7 87 266-392 216-303 (626)
260 TIGR01063 gyrA DNA gyrase, A s 42.7 9E+02 0.02 31.6 22.2 121 267-401 542-673 (800)
261 TIGR01069 mutS2 MutS2 family p 42.6 1.1E+02 0.0024 39.4 10.1 40 832-871 550-590 (771)
262 KOG1265 Phospholipase C [Lipid 42.5 39 0.00085 42.9 5.6 77 5-81 46-136 (1189)
263 PF00038 Filament: Intermediat 42.5 1.9E+02 0.0041 32.7 11.1 67 802-868 45-111 (312)
264 TIGR02894 DNA_bind_RsfA transc 42.3 80 0.0017 32.6 6.9 39 801-839 101-139 (161)
265 COG2433 Uncharacterized conser 42.3 1.7E+02 0.0037 36.2 10.6 36 799-834 431-466 (652)
266 PF06102 DUF947: Domain of unk 42.1 1.2E+02 0.0025 31.7 8.3 57 804-860 56-114 (168)
267 COG1842 PspA Phage shock prote 42.0 1.4E+02 0.0031 32.6 9.3 75 800-878 95-177 (225)
268 KOG0649 WD40 repeat protein [G 41.9 3.6E+02 0.0077 30.0 11.9 48 367-415 61-109 (325)
269 PF04111 APG6: Autophagy prote 41.8 2.1E+02 0.0046 32.8 11.2 37 807-843 46-82 (314)
270 PRK14147 heat shock protein Gr 41.7 1.2E+02 0.0026 31.8 8.3 58 809-867 23-80 (172)
271 KOG3478 Prefoldin subunit 6, K 41.5 54 0.0012 31.5 5.2 46 799-844 71-116 (120)
272 PRK14163 heat shock protein Gr 41.4 1.7E+02 0.0037 31.7 9.6 60 806-866 42-101 (214)
273 PRK13729 conjugal transfer pil 41.2 44 0.00096 40.1 5.6 38 962-1006 293-330 (475)
274 cd01240 PH_beta-ARK Beta adren 41.0 57 0.0012 31.5 5.2 66 4-79 30-98 (116)
275 PRK14144 heat shock protein Gr 40.7 1.3E+02 0.0028 32.3 8.5 58 809-867 50-107 (199)
276 PF12329 TMF_DNA_bd: TATA elem 40.7 1E+02 0.0022 27.6 6.6 19 821-839 36-54 (74)
277 PF09730 BicD: Microtubule-ass 40.5 1.5E+02 0.0032 37.8 10.3 67 810-876 397-463 (717)
278 CHL00019 atpF ATP synthase CF0 40.4 2.4E+02 0.0052 29.6 10.6 26 830-855 81-106 (184)
279 PF07160 DUF1395: Protein of u 40.3 1.6E+02 0.0036 32.5 9.6 71 810-880 5-80 (243)
280 PF10211 Ax_dynein_light: Axon 40.3 2.2E+02 0.0047 30.3 10.2 32 813-844 122-153 (189)
281 PRK00409 recombination and DNA 40.3 1.2E+02 0.0026 39.2 9.9 9 844-852 567-575 (782)
282 PF12777 MT: Microtubule-bindi 40.2 1.5E+02 0.0034 34.3 10.0 33 802-835 7-39 (344)
283 smart00338 BRLZ basic region l 40.2 64 0.0014 27.8 5.2 34 808-841 30-63 (65)
284 TIGR02169 SMC_prok_A chromosom 39.8 1.4E+02 0.003 40.1 10.9 37 33-76 9-50 (1164)
285 PF09969 DUF2203: Uncharacteri 39.6 89 0.0019 30.7 6.6 27 802-828 5-37 (120)
286 PRK14131 N-acetylneuraminic ac 39.6 6.7E+02 0.015 29.2 17.8 18 324-341 131-148 (376)
287 PF00261 Tropomyosin: Tropomyo 39.1 2.6E+02 0.0056 30.6 11.0 64 808-872 124-188 (237)
288 PRK13454 F0F1 ATP synthase sub 39.1 2.7E+02 0.0059 29.2 10.7 16 811-826 72-87 (181)
289 KOG0278 Serine/threonine kinas 39.0 3.5E+02 0.0075 30.2 11.3 38 303-341 134-173 (334)
290 cd01232 PH_TRIO Trio pleckstri 38.9 61 0.0013 31.5 5.4 40 41-80 71-113 (114)
291 PF14362 DUF4407: Domain of un 38.9 1.4E+02 0.0031 33.7 9.2 63 816-878 133-207 (301)
292 PF11853 DUF3373: Protein of u 38.4 24 0.00053 42.5 3.0 34 809-843 23-56 (489)
293 PRK14472 F0F1 ATP synthase sub 38.3 2.7E+02 0.0058 28.9 10.5 11 843-853 103-113 (175)
294 PRK06568 F0F1 ATP synthase sub 38.2 3.3E+02 0.0072 28.0 10.8 48 809-856 50-102 (154)
295 KOG0612 Rho-associated, coiled 38.1 1E+02 0.0022 40.9 8.4 76 800-875 563-638 (1317)
296 PF04899 MbeD_MobD: MbeD/MobD 38.0 60 0.0013 28.9 4.6 40 799-838 30-69 (70)
297 KOG3067 Translin family protei 37.8 74 0.0016 33.5 5.9 60 814-880 23-82 (226)
298 PF09738 DUF2051: Double stran 37.6 1.3E+02 0.0028 34.4 8.4 62 810-878 104-165 (302)
299 COG4026 Uncharacterized protei 37.5 2.6E+02 0.0056 30.3 9.9 61 821-881 131-194 (290)
300 PRK06568 F0F1 ATP synthase sub 37.4 2.9E+02 0.0063 28.4 10.2 54 799-855 30-86 (154)
301 PF07200 Mod_r: Modifier of ru 37.3 2.7E+02 0.0058 28.0 10.1 46 798-843 35-80 (150)
302 PRK06231 F0F1 ATP synthase sub 37.3 2.7E+02 0.0058 29.9 10.5 23 830-852 105-127 (205)
303 PF04762 IKI3: IKI3 family; I 37.3 1.1E+03 0.025 31.2 19.1 203 313-560 426-636 (928)
304 PF03310 Cauli_DNA-bind: Cauli 37.3 1.1E+02 0.0023 30.2 6.5 25 811-835 6-30 (121)
305 PRK14157 heat shock protein Gr 37.2 1.4E+02 0.003 32.7 8.2 59 808-867 81-139 (227)
306 PRK14161 heat shock protein Gr 37.2 2E+02 0.0043 30.3 9.2 67 800-875 8-74 (178)
307 PF13870 DUF4201: Domain of un 37.2 2E+02 0.0043 29.9 9.3 35 813-847 44-78 (177)
308 KOG0239 Kinesin (KAR3 subfamil 36.9 1.7E+02 0.0036 37.3 10.0 69 806-875 243-315 (670)
309 PF15035 Rootletin: Ciliary ro 36.8 1.9E+02 0.0041 30.6 9.0 59 799-857 4-78 (182)
310 PF08287 DASH_Spc19: Spc19; I 36.7 55 0.0012 33.6 4.9 44 796-839 60-103 (153)
311 PRK14164 heat shock protein Gr 36.6 1.4E+02 0.003 32.5 8.1 55 811-866 77-131 (218)
312 TIGR03185 DNA_S_dndD DNA sulfu 36.5 2E+02 0.0044 36.3 11.0 45 802-846 207-251 (650)
313 PHA02790 Kelch-like protein; P 36.4 2.2E+02 0.0048 34.5 10.9 13 383-395 314-326 (480)
314 PF07569 Hira: TUP1-like enhan 36.4 1.1E+02 0.0024 33.2 7.5 30 535-564 12-41 (219)
315 TIGR02169 SMC_prok_A chromosom 36.3 1.7E+02 0.0037 39.3 10.9 10 973-982 1058-1067(1164)
316 PF04899 MbeD_MobD: MbeD/MobD 36.3 2.9E+02 0.0062 24.7 8.5 60 814-876 6-65 (70)
317 PF07304 SRA1: Steroid recepto 36.3 14 0.00031 38.0 0.6 26 58-83 114-139 (157)
318 TIGR02977 phageshock_pspA phag 36.3 2.1E+02 0.0045 31.0 9.5 40 812-851 46-85 (219)
319 PF08647 BRE1: BRE1 E3 ubiquit 36.2 2.3E+02 0.0049 26.6 8.6 47 801-847 7-53 (96)
320 PRK13940 glutamyl-tRNA reducta 36.1 1E+02 0.0022 36.7 7.8 75 799-874 308-394 (414)
321 COG4942 Membrane-bound metallo 36.1 2.5E+02 0.0054 33.5 10.6 13 964-976 394-406 (420)
322 cd00632 Prefoldin_beta Prefold 36.1 97 0.0021 29.4 6.2 43 801-843 60-102 (105)
323 PF07200 Mod_r: Modifier of ru 36.0 2.4E+02 0.0052 28.4 9.5 46 800-845 44-89 (150)
324 COG1842 PspA Phage shock prote 36.0 1.9E+02 0.0042 31.6 9.2 44 810-853 44-87 (225)
325 PTZ00464 SNF-7-like protein; P 36.0 1E+02 0.0022 33.4 6.9 28 853-880 95-125 (211)
326 PF07975 C1_4: TFIIH C1-like d 35.9 10 0.00022 31.6 -0.4 30 617-646 2-37 (51)
327 KOG1841 Smad anchor for recept 35.9 34 0.00073 44.6 3.8 53 608-675 651-703 (1287)
328 KOG0980 Actin-binding protein 35.8 3.4E+02 0.0074 35.1 12.1 32 793-824 322-353 (980)
329 KOG0250 DNA repair protein RAD 35.8 1.7E+02 0.0038 38.5 9.9 72 799-870 736-807 (1074)
330 PF07851 TMPIT: TMPIT-like pro 35.4 1.4E+02 0.0031 34.4 8.3 74 807-880 7-88 (330)
331 TIGR03547 muta_rot_YjhT mutatr 35.4 7.2E+02 0.016 28.3 17.7 15 496-510 315-329 (346)
332 cd07666 BAR_SNX7 The Bin/Amphi 35.1 2.4E+02 0.0052 31.2 9.8 52 807-858 159-210 (243)
333 PF09388 SpoOE-like: Spo0E lik 35.0 78 0.0017 25.4 4.5 38 809-846 2-39 (45)
334 TIGR03545 conserved hypothetic 34.9 1.3E+02 0.0029 37.2 8.6 16 855-870 242-257 (555)
335 PF12128 DUF3584: Protein of u 34.7 1.6E+02 0.0034 40.2 10.1 27 809-835 605-631 (1201)
336 KOG1029 Endocytic adaptor prot 34.7 1.1E+02 0.0024 38.6 7.5 62 808-876 441-502 (1118)
337 KOG3433 Protein involved in me 34.7 1.8E+02 0.0039 30.6 8.1 65 814-878 84-148 (203)
338 PF05911 DUF869: Plant protein 34.5 2.2E+02 0.0047 36.8 10.5 65 808-872 593-657 (769)
339 PRK09343 prefoldin subunit bet 34.5 3.2E+02 0.007 26.8 9.7 35 809-843 12-46 (121)
340 PF15358 TSKS: Testis-specific 34.5 7.9E+02 0.017 29.1 13.8 52 796-847 124-178 (558)
341 PF08458 PH_2: Plant pleckstri 34.5 70 0.0015 31.0 4.8 37 45-81 69-105 (110)
342 PRK04325 hypothetical protein; 34.4 2.7E+02 0.0059 24.9 8.3 15 862-876 46-60 (74)
343 PF10805 DUF2730: Protein of u 34.4 2.4E+02 0.0051 27.1 8.5 66 810-875 34-101 (106)
344 KOG0993 Rab5 GTPase effector R 34.3 2.2 4.8E-05 48.9 -6.0 64 607-674 461-526 (542)
345 PF09006 Surfac_D-trimer: Lung 34.3 72 0.0016 26.0 4.0 23 815-837 3-25 (46)
346 KOG3366 Mitochondrial F1F0-ATP 34.1 1.6E+02 0.0035 30.7 7.6 74 796-879 26-131 (172)
347 cd00584 Prefoldin_alpha Prefol 34.0 3.4E+02 0.0073 26.5 9.9 75 799-876 1-117 (129)
348 COG1579 Zn-ribbon protein, pos 33.9 1.6E+02 0.0035 32.4 8.2 43 809-851 115-157 (239)
349 PF10267 Tmemb_cc2: Predicted 33.9 3.7E+02 0.008 31.9 11.6 19 810-828 218-236 (395)
350 TIGR02168 SMC_prok_B chromosom 33.9 1.9E+02 0.0041 38.8 10.7 6 47-52 25-30 (1179)
351 PRK15365 type III secretion sy 33.8 3.2E+02 0.007 25.8 8.7 81 800-880 12-100 (107)
352 PF15135 UPF0515: Uncharacteri 33.8 40 0.00086 36.9 3.4 34 608-641 126-166 (278)
353 PF06005 DUF904: Protein of un 33.7 1.4E+02 0.0029 26.8 6.2 27 813-839 6-32 (72)
354 PF14257 DUF4349: Domain of un 33.6 1.4E+02 0.003 33.1 7.9 64 809-877 130-193 (262)
355 PRK14160 heat shock protein Gr 33.6 2.1E+02 0.0046 31.0 8.9 65 813-879 56-121 (211)
356 PF07321 YscO: Type III secret 33.5 2.9E+02 0.0062 28.4 9.4 62 809-870 65-129 (152)
357 PF12777 MT: Microtubule-bindi 33.4 1.7E+02 0.0037 33.9 8.9 24 819-842 16-39 (344)
358 PF05010 TACC: Transforming ac 33.4 2.8E+02 0.0061 30.0 9.7 62 796-857 103-168 (207)
359 PRK11020 hypothetical protein; 33.3 1.3E+02 0.0028 29.1 6.3 44 809-868 3-46 (118)
360 PRK10698 phage shock protein P 33.2 2.4E+02 0.0053 30.7 9.5 40 812-851 46-85 (222)
361 PF06008 Laminin_I: Laminin Do 33.2 2.6E+02 0.0057 31.0 10.0 81 791-871 144-231 (264)
362 PLN02943 aminoacyl-tRNA ligase 33.2 68 0.0015 42.5 6.1 59 816-874 887-952 (958)
363 cd07627 BAR_Vps5p The Bin/Amph 32.8 2.7E+02 0.0058 30.0 9.7 35 808-842 119-160 (216)
364 TIGR02209 ftsL_broad cell divi 32.8 1.5E+02 0.0032 26.7 6.6 30 808-837 28-57 (85)
365 PRK09174 F0F1 ATP synthase sub 32.7 3.6E+02 0.0077 29.0 10.5 39 811-852 94-132 (204)
366 PRK00045 hemA glutamyl-tRNA re 32.4 1.4E+02 0.0031 35.6 8.2 75 799-874 315-401 (423)
367 PHA02562 46 endonuclease subun 32.4 2.5E+02 0.0054 34.5 10.6 33 808-840 178-210 (562)
368 PF05667 DUF812: Protein of un 32.3 1.8E+02 0.0039 36.4 9.2 38 809-846 326-363 (594)
369 PF07271 Cytadhesin_P30: Cytad 32.3 45 0.00097 36.9 3.5 47 803-860 96-143 (279)
370 KOG4005 Transcription factor X 32.2 1.3E+02 0.0028 32.8 6.7 25 799-823 99-123 (292)
371 KOG4360 Uncharacterized coiled 32.1 1.6E+02 0.0036 35.5 8.2 22 855-876 263-284 (596)
372 KOG0239 Kinesin (KAR3 subfamil 32.0 2.5E+02 0.0054 35.7 10.5 52 800-851 230-281 (670)
373 PF05103 DivIVA: DivIVA protei 32.0 53 0.0012 32.1 3.9 55 800-854 28-89 (131)
374 TIGR01843 type_I_hlyD type I s 31.9 2.8E+02 0.006 32.5 10.6 61 814-874 206-267 (423)
375 PF09726 Macoilin: Transmembra 31.9 1.4E+02 0.003 38.2 8.2 41 799-839 540-580 (697)
376 PF14662 CCDC155: Coiled-coil 31.9 4.5E+02 0.0098 28.0 10.6 25 800-824 32-56 (193)
377 COG3064 TolA Membrane protein 31.8 2.1E+02 0.0046 32.5 8.6 24 837-860 145-168 (387)
378 PF04102 SlyX: SlyX; InterPro 31.7 83 0.0018 27.7 4.6 37 802-838 16-52 (69)
379 PF06160 EzrA: Septation ring 31.7 2.3E+02 0.005 35.2 10.1 30 853-882 187-219 (560)
380 KOG0804 Cytoplasmic Zn-finger 31.6 2.8E+02 0.0061 33.1 9.9 30 613-646 227-256 (493)
381 PRK09973 putative outer membra 31.6 1.2E+02 0.0027 28.0 5.7 38 808-845 28-65 (85)
382 PTZ00419 valyl-tRNA synthetase 31.6 70 0.0015 42.5 5.9 28 847-874 965-992 (995)
383 PF02388 FemAB: FemAB family; 31.5 1.2E+02 0.0027 35.9 7.5 40 800-843 238-277 (406)
384 PF01920 Prefoldin_2: Prefoldi 31.5 97 0.0021 28.9 5.4 43 801-843 59-101 (106)
385 COG4942 Membrane-bound metallo 31.5 1.8E+02 0.0039 34.7 8.5 45 809-853 204-248 (420)
386 KOG1003 Actin filament-coating 31.5 1.8E+02 0.0038 31.1 7.5 57 812-871 5-71 (205)
387 PF05529 Bap31: B-cell recepto 31.3 72 0.0016 33.7 4.9 48 796-843 139-186 (192)
388 smart00706 TECPR Beta propelle 31.3 83 0.0018 23.5 3.9 25 314-338 8-33 (35)
389 CHL00118 atpG ATP synthase CF0 31.3 4.2E+02 0.0091 27.0 10.4 38 812-852 64-101 (156)
390 PF12072 DUF3552: Domain of un 31.3 2.1E+02 0.0045 30.6 8.5 43 823-870 122-164 (201)
391 PF15294 Leu_zip: Leucine zipp 31.2 1.5E+02 0.0032 33.4 7.4 47 807-867 128-174 (278)
392 PLN02678 seryl-tRNA synthetase 31.2 2E+02 0.0044 34.7 9.1 70 809-878 38-110 (448)
393 PRK05759 F0F1 ATP synthase sub 31.1 4.7E+02 0.01 26.3 10.7 10 843-852 89-98 (156)
394 PF10828 DUF2570: Protein of u 31.1 4.5E+02 0.0097 25.3 9.9 42 809-850 23-64 (110)
395 PRK11448 hsdR type I restricti 30.9 2.1E+02 0.0045 38.7 10.1 34 809-842 147-180 (1123)
396 COG0172 SerS Seryl-tRNA synthe 30.9 1.4E+02 0.0031 35.7 7.6 58 961-1018 244-318 (429)
397 PF04977 DivIC: Septum formati 30.9 86 0.0019 27.6 4.7 34 811-844 17-50 (80)
398 PRK14473 F0F1 ATP synthase sub 30.9 4.3E+02 0.0092 27.1 10.5 7 871-877 134-140 (164)
399 PRK05759 F0F1 ATP synthase sub 30.9 4.5E+02 0.0097 26.5 10.5 25 830-854 61-85 (156)
400 PF00170 bZIP_1: bZIP transcri 30.9 1.6E+02 0.0034 25.3 6.1 20 808-827 37-56 (64)
401 PF13815 Dzip-like_N: Iguana/D 30.9 1.3E+02 0.0028 29.3 6.2 23 816-838 78-100 (118)
402 KOG3335 Predicted coiled-coil 30.7 86 0.0019 32.7 5.0 21 806-826 101-121 (181)
403 PRK14472 F0F1 ATP synthase sub 30.7 4.6E+02 0.01 27.2 10.8 57 799-855 44-100 (175)
404 PF04420 CHD5: CHD5-like prote 30.5 1.1E+02 0.0025 31.5 6.1 44 801-844 37-92 (161)
405 PHA02562 46 endonuclease subun 30.5 2.8E+02 0.006 34.1 10.7 56 800-855 163-218 (562)
406 PF12352 V-SNARE_C: Snare regi 30.5 2E+02 0.0044 24.6 6.8 49 831-879 7-55 (66)
407 PF04568 IATP: Mitochondrial A 30.5 76 0.0016 30.2 4.3 25 818-842 72-100 (100)
408 PRK06800 fliH flagellar assemb 30.4 5.8E+02 0.013 27.0 10.8 78 801-878 42-124 (228)
409 TIGR02338 gimC_beta prefoldin, 30.4 1.4E+02 0.0029 28.7 6.2 42 804-845 67-108 (110)
410 PRK00295 hypothetical protein; 30.3 1.2E+02 0.0026 26.7 5.3 14 862-875 42-55 (68)
411 PF15136 UPF0449: Uncharacteri 30.3 80 0.0017 29.9 4.3 32 809-843 65-96 (97)
412 PRK13729 conjugal transfer pil 30.3 1.6E+02 0.0034 35.6 7.9 24 852-875 103-126 (475)
413 PRK00736 hypothetical protein; 30.3 1.1E+02 0.0024 27.0 5.0 15 862-876 42-56 (68)
414 COG0711 AtpF F0F1-type ATP syn 30.2 4.6E+02 0.0099 27.0 10.5 20 836-855 84-103 (161)
415 TIGR00293 prefoldin, archaeal 30.1 1.2E+02 0.0026 29.5 6.0 31 809-839 4-34 (126)
416 PF01093 Clusterin: Clusterin; 30.0 1.3E+02 0.0027 36.1 7.0 55 809-863 14-75 (436)
417 TIGR02977 phageshock_pspA phag 29.9 1.9E+02 0.0041 31.3 7.9 46 808-855 103-148 (219)
418 PF11853 DUF3373: Protein of u 29.8 44 0.00096 40.3 3.3 31 809-839 29-59 (489)
419 KOG1962 B-cell receptor-associ 29.6 1.9E+02 0.0041 31.4 7.6 36 806-841 153-188 (216)
420 PRK10803 tol-pal system protei 29.5 1E+02 0.0023 34.3 6.0 17 819-835 69-85 (263)
421 PF01166 TSC22: TSC-22/dip/bun 29.5 52 0.0011 28.1 2.7 29 810-838 13-41 (59)
422 KOG0320 Predicted E3 ubiquitin 29.5 7.2 0.00016 40.5 -2.8 30 634-673 149-178 (187)
423 smart00706 TECPR Beta propelle 29.5 90 0.0019 23.3 3.8 24 370-393 9-33 (35)
424 KOG0240 Kinesin (SMY1 subfamil 29.4 3.1E+02 0.0067 33.8 10.0 30 804-833 414-443 (607)
425 TIGR03319 YmdA_YtgF conserved 29.3 1.9E+02 0.004 35.7 8.6 33 821-853 118-150 (514)
426 COG1196 Smc Chromosome segrega 29.2 2.6E+02 0.0057 38.0 10.7 40 32-77 9-52 (1163)
427 PRK10328 DNA binding protein, 29.2 3.7E+02 0.008 27.1 9.1 55 814-874 12-66 (134)
428 PRK00846 hypothetical protein; 29.1 2.8E+02 0.0061 25.2 7.4 51 822-879 10-60 (77)
429 PF06008 Laminin_I: Laminin Do 28.9 4.1E+02 0.0089 29.5 10.7 68 800-874 48-115 (264)
430 PF06120 Phage_HK97_TLTM: Tail 28.9 4.2E+02 0.0092 30.3 10.6 70 808-877 85-172 (301)
431 PRK13453 F0F1 ATP synthase sub 28.8 4.6E+02 0.01 27.2 10.4 11 843-853 103-113 (173)
432 PF14817 HAUS5: HAUS augmin-li 28.7 3.5E+02 0.0075 34.2 10.8 39 805-843 80-118 (632)
433 PF10018 Med4: Vitamin-D-recep 28.6 1.3E+02 0.0028 31.8 6.3 44 800-843 5-54 (188)
434 PRK08475 F0F1 ATP synthase sub 28.6 5.5E+02 0.012 26.5 10.8 12 842-853 106-117 (167)
435 PRK10780 periplasmic chaperone 28.6 4.1E+02 0.0088 27.4 9.8 19 803-821 42-60 (165)
436 PF04216 FdhE: Protein involve 28.5 11 0.00024 42.5 -1.8 37 640-676 213-252 (290)
437 PRK13461 F0F1 ATP synthase sub 28.5 5.1E+02 0.011 26.3 10.5 22 855-876 115-136 (159)
438 PF08657 DASH_Spc34: DASH comp 28.5 1.5E+02 0.0032 33.2 6.9 32 808-839 184-215 (259)
439 KOG1850 Myosin-like coiled-coi 28.4 4.4E+02 0.0096 30.1 10.3 69 799-867 132-215 (391)
440 PF14775 NYD-SP28_assoc: Sperm 28.4 83 0.0018 27.1 3.9 23 790-812 8-35 (60)
441 cd01241 PH_Akt Akt pleckstrin 28.4 94 0.002 29.3 4.7 35 44-78 65-101 (102)
442 PF06156 DUF972: Protein of un 28.4 1.6E+02 0.0035 28.3 6.3 36 808-843 19-54 (107)
443 PRK05729 valS valyl-tRNA synth 28.4 1.1E+02 0.0024 40.1 6.9 26 847-872 847-872 (874)
444 PF05082 Rop-like: Rop-like; 28.3 1.4E+02 0.003 26.4 5.1 38 831-882 1-38 (66)
445 PF12329 TMF_DNA_bd: TATA elem 28.3 4.4E+02 0.0095 23.6 8.7 34 811-844 12-45 (74)
446 KOG2129 Uncharacterized conser 28.3 2.6E+02 0.0055 33.0 8.7 25 799-823 248-272 (552)
447 KOG0971 Microtubule-associated 28.3 3.6E+02 0.0079 34.9 10.6 75 802-876 401-499 (1243)
448 PF15456 Uds1: Up-regulated Du 28.2 2.5E+02 0.0055 27.8 7.7 40 810-850 21-61 (124)
449 KOG2932 E3 ubiquitin ligase in 28.1 20 0.00044 40.1 0.1 55 609-678 85-139 (389)
450 COG3879 Uncharacterized protei 28.1 1.7E+02 0.0037 32.3 7.1 12 867-878 99-110 (247)
451 PRK14471 F0F1 ATP synthase sub 28.1 5.6E+02 0.012 26.2 10.7 7 871-877 134-140 (164)
452 KOG1587 Cytoplasmic dynein int 28.0 7.8E+02 0.017 30.7 13.5 191 213-456 259-469 (555)
453 PF04012 PspA_IM30: PspA/IM30 28.0 3.1E+02 0.0067 29.4 9.3 38 816-853 49-86 (221)
454 PRK00591 prfA peptide chain re 28.0 2.8E+02 0.0061 32.5 9.3 73 800-881 29-108 (359)
455 COG1196 Smc Chromosome segrega 27.9 2.9E+02 0.0063 37.6 10.8 27 809-835 826-852 (1163)
456 PF10498 IFT57: Intra-flagella 27.9 3.5E+02 0.0077 31.7 10.1 50 830-879 264-313 (359)
457 PF06810 Phage_GP20: Phage min 27.8 2.4E+02 0.0053 28.9 7.9 78 799-877 36-133 (155)
458 smart00787 Spc7 Spc7 kinetocho 27.8 2.7E+02 0.0058 32.0 9.0 44 800-843 154-197 (312)
459 PF09730 BicD: Microtubule-ass 27.8 2.5E+02 0.0054 35.9 9.4 63 805-874 259-321 (717)
460 KOG0245 Kinesin-like protein [ 27.8 2E+02 0.0044 37.7 8.5 67 800-876 357-446 (1221)
461 PF07989 Microtub_assoc: Micro 27.7 1.2E+02 0.0025 27.4 4.9 13 832-844 57-69 (75)
462 PRK10636 putative ABC transpor 27.6 2.1E+02 0.0046 36.1 9.0 63 814-876 559-628 (638)
463 PF10224 DUF2205: Predicted co 27.6 1.8E+02 0.0038 26.7 5.9 28 803-830 15-42 (80)
464 KOG1900 Nuclear pore complex, 27.6 1.1E+03 0.023 32.3 15.0 164 213-402 93-278 (1311)
465 KOG0933 Structural maintenance 27.6 3.4E+02 0.0073 35.7 10.3 31 32-62 9-46 (1174)
466 PRK14011 prefoldin subunit alp 27.6 1.2E+02 0.0027 30.7 5.6 45 810-865 2-46 (144)
467 PRK14471 F0F1 ATP synthase sub 27.5 5.8E+02 0.013 26.0 10.8 12 815-826 53-64 (164)
468 PF11727 ISG65-75: Invariant s 27.4 2.2E+02 0.0047 32.2 8.2 51 826-876 90-140 (286)
469 PF14932 HAUS-augmin3: HAUS au 27.4 5E+02 0.011 28.8 10.9 50 805-854 83-132 (256)
470 COG1382 GimC Prefoldin, chaper 27.4 1.2E+02 0.0026 29.8 5.2 41 796-836 69-109 (119)
471 PRK03947 prefoldin subunit alp 27.4 1.5E+02 0.0033 29.5 6.3 44 801-844 91-134 (140)
472 KOG0163 Myosin class VI heavy 27.4 2.8E+02 0.006 35.2 9.2 19 996-1014 1224-1242(1259)
473 PRK10698 phage shock protein P 27.4 1.9E+02 0.004 31.6 7.3 45 811-855 99-148 (222)
474 PF08614 ATG16: Autophagy prot 27.3 3.7E+02 0.0081 28.4 9.5 74 799-876 104-181 (194)
475 PF04350 PilO: Pilus assembly 27.3 69 0.0015 31.7 3.8 18 862-879 32-49 (144)
476 KOG0288 WD40 repeat protein Ti 27.2 2.3E+02 0.0049 33.5 8.1 72 796-867 54-135 (459)
477 TIGR02894 DNA_bind_RsfA transc 27.2 2.1E+02 0.0046 29.6 7.1 35 808-842 101-135 (161)
478 PRK09343 prefoldin subunit bet 27.2 1.9E+02 0.0041 28.4 6.7 38 808-845 75-112 (121)
479 KOG1408 WD40 repeat protein [F 27.1 1.1E+02 0.0023 38.4 5.7 103 267-394 138-247 (1080)
480 PRK04778 septation ring format 27.1 1.9E+02 0.0042 36.0 8.4 37 799-835 319-365 (569)
481 PRK08476 F0F1 ATP synthase sub 26.9 4.4E+02 0.0095 26.4 9.5 44 811-854 48-92 (141)
482 PLN02372 violaxanthin de-epoxi 26.9 2.8E+02 0.006 32.8 8.8 19 854-872 426-444 (455)
483 PRK06746 peptide chain release 26.9 3.3E+02 0.0071 31.5 9.4 72 800-880 8-82 (326)
484 PF03938 OmpH: Outer membrane 26.7 5.8E+02 0.013 25.6 10.5 26 800-825 39-64 (158)
485 PF15450 DUF4631: Domain of un 26.7 3.2E+02 0.007 33.3 9.5 81 799-879 282-370 (531)
486 PTZ00446 vacuolar sorting prot 26.6 1.3E+02 0.0027 32.1 5.6 22 858-879 106-130 (191)
487 PRK13455 F0F1 ATP synthase sub 26.5 5.8E+02 0.013 26.7 10.7 10 834-843 88-97 (184)
488 cd00632 Prefoldin_beta Prefold 26.5 1.2E+02 0.0025 28.9 5.0 44 796-839 62-105 (105)
489 KOG4797 Transcriptional regula 26.5 1.6E+02 0.0034 28.3 5.5 45 810-870 66-110 (123)
490 PF11488 Lge1: Transcriptional 26.5 1.4E+02 0.0031 27.1 5.3 35 811-845 44-78 (80)
491 PF11839 DUF3359: Protein of u 26.5 5.7E+02 0.012 24.3 10.0 63 813-875 30-92 (96)
492 PRK14159 heat shock protein Gr 26.5 2.8E+02 0.0062 29.1 8.2 56 810-866 29-84 (176)
493 PF05508 Ran-binding: RanGTP-b 26.4 2.4E+02 0.0052 32.2 8.0 54 825-879 84-137 (302)
494 PF14712 Snapin_Pallidin: Snap 26.4 5E+02 0.011 23.7 9.8 67 808-875 18-86 (92)
495 TIGR02231 conserved hypothetic 26.3 2.2E+02 0.0048 34.9 8.7 33 799-831 73-105 (525)
496 PF02344 Myc-LZ: Myc leucine z 26.2 1.3E+02 0.0029 22.5 3.9 27 812-838 2-28 (32)
497 PRK03947 prefoldin subunit alp 26.2 1.1E+02 0.0025 30.4 5.1 46 798-843 95-140 (140)
498 PF03357 Snf7: Snf7; InterPro 26.2 3.5E+02 0.0076 27.3 8.9 62 811-872 1-67 (171)
499 PRK12704 phosphodiesterase; Pr 26.2 2.3E+02 0.005 35.0 8.6 72 800-876 103-174 (520)
500 PRK07353 F0F1 ATP synthase sub 26.1 6.2E+02 0.013 25.0 10.4 78 796-875 28-105 (140)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7.5e-46 Score=414.78 Aligned_cols=368 Identities=23% Similarity=0.383 Sum_probs=296.4
Q ss_pred eEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccc--cCCCEEEEEecCCEEEEEEeCCeEEEEecC
Q 001683 212 IERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESA--VMLDVQNISLGAKHAALVTKEGEVFCWGEG 289 (1030)
Q Consensus 212 ~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N 289 (1030)
......-++||+||.|. .++||.|... .....|...... ....|++++||+.|+++|+.||.||+||.|
T Consensus 61 ~~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N 131 (476)
T COG5184 61 THLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN 131 (476)
T ss_pred hhhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC
Confidence 34667788999999999 9999999864 235777777666 568899999999999999999999999999
Q ss_pred CCCcCCCCCC----------------ccccccEEecc----cCCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccC
Q 001683 290 KDGRLGHKVN----------------MDVSCPKLVEC----LSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVG 349 (1030)
Q Consensus 290 ~~GQLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG 349 (1030)
..|+||.... .....|..|+. ....+|++++||++++++|+++|+||.||.+..+.+..|
T Consensus 132 ~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g 211 (476)
T COG5184 132 DDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQG 211 (476)
T ss_pred cccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccc
Confidence 9999997661 12567888776 234489999999999999999999999999865555555
Q ss_pred CCCCcc----eeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCCCCcCCCeEeeecCCC-eEE
Q 001683 350 ERRSRS----HWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGL-KVK 424 (1030)
Q Consensus 350 ~~~~~~----~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~-~I~ 424 (1030)
...... ..+|..+. ...|+++++|.+|.++|+++|+||+||+|.+||||....+....+..+..+-.. .|+
T Consensus 212 ~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~ 287 (476)
T COG5184 212 SYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIK 287 (476)
T ss_pred cccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhh
Confidence 333332 24454443 457999999999999999999999999999999999887776666655543222 378
Q ss_pred EEEecCCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCCCC----CceeeeeEeeecccCceEEEEeccceeEEEe
Q 001683 425 SVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDG----ERKLLPTCVTRLVDFDFVQASCGRMLTVGLT 500 (1030)
Q Consensus 425 ~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~Iv~IacG~~htlaLt 500 (1030)
.|+||.+|++||. .+|+||+||.|.+||||.+.. .....|.....+....|.+|++|..|+++|.
T Consensus 288 ~vacG~~h~~al~-----------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~ 356 (476)
T COG5184 288 YVACGKDHSLALD-----------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILR 356 (476)
T ss_pred hcccCcceEEEEc-----------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEe
Confidence 8999999999996 599999999999999999821 1234566666677778999999999999999
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCC---cceeEEecccccccEEEEEeCCCceeEEecCCeEEEEeCCCCCCCCCCCCC-Cc
Q 001683 501 GLGKVYTMGSAVHGQLGNPKAKD---RSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQ-ER 576 (1030)
Q Consensus 501 ~dG~Vy~wG~N~~GQLG~~~~~~---~~p~~V~~~l~~~~V~~Ia~G~~Hs~aLTsdG~Vy~WG~N~~GQLG~G~~~-~~ 576 (1030)
.+|.||+||.+..||||.+.... ..|..+. ....+.+|+||..|.++.+.+|+||.||.|.+|+||.|+.. +.
T Consensus 357 ~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~ 433 (476)
T COG5184 357 KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADV 433 (476)
T ss_pred cCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhc
Confidence 99999999999999999987432 2222222 13569999999999999999999999999999999999854 56
Q ss_pred ceeeeecc--ccCCeeEEeeecCCccceeeec
Q 001683 577 ETPTFVEA--LRDRQVESVVCGSSITAAICLH 606 (1030)
Q Consensus 577 ~~Pt~V~~--l~~~~V~~IacG~~hT~aI~~~ 606 (1030)
..|+++.. +....++..-||.++.++...+
T Consensus 434 ~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 434 LVPTLIRQPLLSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred cccccccccccCCCceEEeccCcceEEEecch
Confidence 77888874 5666777777777777666543
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.4e-39 Score=359.82 Aligned_cols=319 Identities=26% Similarity=0.465 Sum_probs=260.1
Q ss_pred CCEEEEEEeCCeEEEEecCCCCcCCCCCCccc-cccEEeccc--CCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCc
Q 001683 271 AKHAALVTKEGEVFCWGEGKDGRLGHKVNMDV-SCPKLVECL--SGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADL 347 (1030)
Q Consensus 271 ~~hs~~Lt~dG~VysWG~N~~GQLG~g~~~~~-~~P~~V~~l--~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~ 347 (1030)
..|...++.-+.||+||.|..++||.+.+... ..|++.... ....|++++||..|+++|++||+||+||.| ..|.
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N--~~G~ 135 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN--DDGA 135 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC--cccc
Confidence 46666889999999999999999999987654 889988877 567899999999999999999999999999 5678
Q ss_pred cCCCCC----------------cceeeceeeec---cCCCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCCCC
Q 001683 348 VGERRS----------------RSHWLPRKLFD---TLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQN 408 (1030)
Q Consensus 348 LG~~~~----------------~~~~~P~~v~~---~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~ 408 (1030)
||.... ....+|..+.. .....+|++++||++++++|+++|.||.||....+.++.+...+
T Consensus 136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence 887651 12456777754 22244799999999999999999999999999888888885444
Q ss_pred cCC----CeEeeecCCCeEEEEEecCCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCCCCCceeeeeEeeeccc-
Q 001683 409 VSQ----PKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVD- 483 (1030)
Q Consensus 409 ~~~----P~~V~~l~~~~I~~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~- 483 (1030)
... +.++... ...|+++++|..|.++|+ .+|++|+||+|.+||||....+....+..+..+..
T Consensus 216 s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt-----------~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i 283 (476)
T COG5184 216 SQKTSIQFTPLKVP-KKAIVQLAAGADHLIALT-----------NEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAI 283 (476)
T ss_pred cccceeeeeeeecC-chheeeeccCCceEEEEe-----------cCCcEEEecCCcccccCCchhhhcccccccCChhhh
Confidence 322 2222222 356999999999999998 49999999999999999988777666666654432
Q ss_pred CceEEEEeccceeEEEeCCCeEEEEeCCCCCCCCCCCCCCcceeEE-----ecccccccEEEEEeCCCceeEEecCCeEE
Q 001683 484 FDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVV-----EGKLKEEFVKGISSGSYHVAVLTSGGSVY 558 (1030)
Q Consensus 484 ~~Iv~IacG~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~V-----~~~l~~~~V~~Ia~G~~Hs~aLTsdG~Vy 558 (1030)
..|..|+||.+|++||+++|+||+||.|.+||||.+ .+...+... ...+.+..|..|++|..|.++|..+|.||
T Consensus 284 ~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~ 362 (476)
T COG5184 284 RNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLY 362 (476)
T ss_pred hhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccceeeccccccccCCCceEEEEecCcceEEEEecCceEE
Confidence 347899999999999999999999999999999998 444333222 22345566999999999999999999999
Q ss_pred EEeCCCCCCCCCCC--CCCcceeeeeccccCCeeEEeeecCCccceeeec
Q 001683 559 TWGKNANGQLGLGD--SQERETPTFVEALRDRQVESVVCGSSITAAICLH 606 (1030)
Q Consensus 559 ~WG~N~~GQLG~G~--~~~~~~Pt~V~~l~~~~V~~IacG~~hT~aI~~~ 606 (1030)
+||.+..||||..+ +.+...|+++... .++.+|+||..|+++.+..
T Consensus 363 a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~ 410 (476)
T COG5184 363 AFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDD 410 (476)
T ss_pred EecCCccccccCcccceeecCCccccccc--cceEEEEecCccceeeccC
Confidence 99999999999998 6666667666543 3699999999999999854
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.2e-39 Score=340.74 Aligned_cols=361 Identities=24% Similarity=0.387 Sum_probs=298.7
Q ss_pred CCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccccCCCEEEEEec--CCEEEEEEeCCeEEEEecCCCCcCC
Q 001683 218 LKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLG--AKHAALVTKEGEVFCWGEGKDGRLG 295 (1030)
Q Consensus 218 ~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G--~~hs~~Lt~dG~VysWG~N~~GQLG 295 (1030)
-|++...|... ..+.|.-+.. ......-|.++..+...+|..|+.| ..|+++|+-+|+.|.||.|..||||
T Consensus 19 ~g~ml~~g~v~-wd~tgkRd~~------~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLG 91 (443)
T KOG1427|consen 19 GGEMLFCGAVA-WDITGKRDGA------MEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLG 91 (443)
T ss_pred CccEEEeccch-hhhhcccccc------cccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccC
Confidence 46677777766 5555544321 1136678889988888899999977 5899999999999999999999999
Q ss_pred CCCCccccccEEecccCCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCCCCCcceeeceeeeccCCCccEEEEE
Q 001683 296 HKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVA 375 (1030)
Q Consensus 296 ~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~~~~~~~~~P~~v~~~l~~~~Iv~Ia 375 (1030)
+++......|+.|..|...+|++.+||++|+++||++|.||.+|.|.++|.+||.........|. + ...+..|+.|+
T Consensus 92 hgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~-~--~~~~~~v~~v~ 168 (443)
T KOG1427|consen 92 HGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPL-P--CVVSDEVTNVA 168 (443)
T ss_pred ccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCC-c--cccCccceeec
Confidence 99988999999999999999999999999999999999999999997765555544332222221 1 12345799999
Q ss_pred eCCCceEEEeeCCcEEEEecCCCcccCCCCCC--------------CcCCCeEeeecCCCeEEEEEecCCeEEEEEeeec
Q 001683 376 CGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQ--------------NVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMV 441 (1030)
Q Consensus 376 cG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~--------------~~~~P~~V~~l~~~~I~~IacG~~Ht~aLte~~~ 441 (1030)
||..+++.|+..+.+.++|...||||||+... ....|..|..+.++.|++++||.+||+|+.
T Consensus 169 cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd---- 244 (443)
T KOG1427|consen 169 CGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD---- 244 (443)
T ss_pred cccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec----
Confidence 99999999999999999999999999998542 234677788889999999999999999995
Q ss_pred ccccccccCCeEEEEecCCCCCcCCCCCCceeeeeEeeeccc--CceEEEEeccceeEEEeCCCeEEEEeCCCCCCCCCC
Q 001683 442 DRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVD--FDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNP 519 (1030)
Q Consensus 442 ~~~~~~~s~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~--~~Iv~IacG~~htlaLt~dG~Vy~wG~N~~GQLG~~ 519 (1030)
++++||+||.+-||+|||........|+.|..+.. .--.++.||+..++++.+-|.+|.||.+.. .
T Consensus 245 -------~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-----~ 312 (443)
T KOG1427|consen 245 -------KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-----N 312 (443)
T ss_pred -------CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc-----C
Confidence 69999999999999999999999999998886643 335789999999999999999999997642 3
Q ss_pred CCCCcceeEEecccccccEEEEEeCCCceeEEecCCeEEEEeCCCCCCCCCCC--CCCcceeeeeccccCCeeEEeeecC
Q 001683 520 KAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGD--SQERETPTFVEALRDRQVESVVCGS 597 (1030)
Q Consensus 520 ~~~~~~p~~V~~~l~~~~V~~Ia~G~~Hs~aLTsdG~Vy~WG~N~~GQLG~G~--~~~~~~Pt~V~~l~~~~V~~IacG~ 597 (1030)
..+...|.++.+ +.+.++..|.||..|.++ ..+.....||...+|.++-|. ......|..|+.+.+.+|..|+||.
T Consensus 313 ge~~mypkP~~d-lsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGy 390 (443)
T KOG1427|consen 313 GEDWMYPKPMMD-LSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGY 390 (443)
T ss_pred cccccCCCchhh-cCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccceeecc
Confidence 344466777765 778889999999999876 456689999999888765554 3456789999999999999999999
Q ss_pred Cccceeeec
Q 001683 598 SITAAICLH 606 (1030)
Q Consensus 598 ~hT~aI~~~ 606 (1030)
.||++|...
T Consensus 391 sHs~vivd~ 399 (443)
T KOG1427|consen 391 SHSMVIVDR 399 (443)
T ss_pred ceEEEEEcc
Confidence 999999843
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=4.9e-35 Score=308.02 Aligned_cols=311 Identities=24% Similarity=0.398 Sum_probs=259.5
Q ss_pred ceEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccccCCCEEEEEecCCEEEEEEeCCeEEEEecCC
Q 001683 211 LIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGK 290 (1030)
Q Consensus 211 ~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N~ 290 (1030)
|.++|+-+|+.|.||.|. .||||+|+. .....|+.|+.+...+|++.+||..|+++||++|+||.||.|.
T Consensus 69 H~vli~megk~~~wGRNe-kGQLGhgD~---------k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK 138 (443)
T KOG1427|consen 69 HCVLIDMEGKCYTWGRNE-KGQLGHGDM---------KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENK 138 (443)
T ss_pred hEEEEecccceeecccCc-cCccCccch---------hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccc
Confidence 888999999999999999 999999975 5567899999999999999999999999999999999999999
Q ss_pred CCcCCCCCCcc-ccccEEecccCCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCCCCCccee------------
Q 001683 291 DGRLGHKVNMD-VSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHW------------ 357 (1030)
Q Consensus 291 ~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~~~~~~~~------------ 357 (1030)
+||||.+...+ +..|.++. .-+..|..|+||..+++.|+..+.+.++|... .||||++++....
T Consensus 139 ~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp~--ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 139 YGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLPQ--YGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred cccccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCcc--ccccccCcchhhccccccceeeeec
Confidence 99999998664 33343333 33458999999999999999999999999995 5889998875432
Q ss_pred --eceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCCCCcCCCeEeeec--CCCeEEEEEecCCeE
Q 001683 358 --LPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESL--RGLKVKSVACGPWHT 433 (1030)
Q Consensus 358 --~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~IacG~~Ht 433 (1030)
.|..| .++.+.+|++++||.+|++++++++.||+||.+-||.|||....+...|+.|..| .+.--..+.||+..+
T Consensus 216 ~pr~~~i-~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~S 294 (443)
T KOG1427|consen 216 QPRPKAI-ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGS 294 (443)
T ss_pred CCCcccc-ccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccc
Confidence 22223 3478899999999999999999999999999999999999999999999988755 344567899999999
Q ss_pred EEEEeeecccccccccCCeEEEEecCCCCCcCCCCCCceeeeeEeeecccCceEEEEeccceeEEEeCCCeEEEEeCCCC
Q 001683 434 AAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVH 513 (1030)
Q Consensus 434 ~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IacG~~htlaLt~dG~Vy~wG~N~~ 513 (1030)
+++.+ -|.||.||.+.. +.+.-..|.++..+...++..+.||..|.++ ..+..+..||...+
T Consensus 295 l~v~e-----------~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~ 356 (443)
T KOG1427|consen 295 LNVAE-----------GGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQY 356 (443)
T ss_pred eeecc-----------cceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccc
Confidence 99874 899999998753 2345668888999999999999999999765 55568999999888
Q ss_pred CCCCC-CCCCC--cceeEEecccccccEEEEEeCCCceeEEecC
Q 001683 514 GQLGN-PKAKD--RSITVVEGKLKEEFVKGISSGSYHVAVLTSG 554 (1030)
Q Consensus 514 GQLG~-~~~~~--~~p~~V~~~l~~~~V~~Ia~G~~Hs~aLTsd 554 (1030)
|.++- ++... ..|..+. .+.+.+|.+|+||..|+++|.++
T Consensus 357 g~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 357 GELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 77653 33332 4565555 37788899999999999999765
No 5
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.96 E-value=1.2e-30 Score=214.07 Aligned_cols=57 Identities=61% Similarity=1.087 Sum_probs=56.0
Q ss_pred ccceEeeeCCeeEEEEEeCCCCccceeEEEeeccccCHHHHHHHHHhccchhheecc
Q 001683 960 KLEYAEQYEPGIYITFTTLPSGQKGLKRVRFSRRRFTEKAAERWWEENQVVVYQKYG 1016 (1030)
Q Consensus 960 ~~~~~~~~e~gv~~t~~~~~~g~~~~~r~~f~~~~f~~~~~~~ww~~n~~~~~~~~~ 1016 (1030)
++|||||+||||||||+++|||+++||||||||++|+|+||+.||+||++||+++||
T Consensus 3 ~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn 59 (59)
T PF08381_consen 3 EKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN 59 (59)
T ss_pred CccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 679999999999999999999999999999999999999999999999999999997
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=6e-25 Score=254.90 Aligned_cols=305 Identities=20% Similarity=0.339 Sum_probs=233.5
Q ss_pred EEEeCCeEEEEecCCCCcCCCCCCccccccEEecccC--CCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCCCCC
Q 001683 276 LVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLS--GINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRS 353 (1030)
Q Consensus 276 ~Lt~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~~~~ 353 (1030)
+++....||.||.|.+..||+|.......|.+|..+. +.-+.+|+.+.+|+++|++.|+||++|.+ ..|.||++..
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCcc
Confidence 5566789999999999999999999999999999875 44578999999999999999999999999 5688999999
Q ss_pred cceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCC-CCcCCCeEeee--cCCC-eEEEEEec
Q 001683 354 RSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNL-QNVSQPKEVES--LRGL-KVKSVACG 429 (1030)
Q Consensus 354 ~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~-~~~~~P~~V~~--l~~~-~I~~IacG 429 (1030)
...++|++|.+ +.+.+|.+|++...|+++||.+|-||+||.|.++|||..+. .....|.+|.. +++. .|+.|++|
T Consensus 215 q~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 99999999987 78889999999999999999999999999999999998755 34556666653 2333 69999999
Q ss_pred CCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCCCCCc-eeeeeEeeecccCceEEEEeccceeEEEeCCCeEEEE
Q 001683 430 PWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGER-KLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTM 508 (1030)
Q Consensus 430 ~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~Iv~IacG~~htlaLt~dG~Vy~w 508 (1030)
..|+++.+ +..||+||.|. ||||..+... ...|..+.. ....|.-|+|....|++++++|.+|++
T Consensus 294 ~~hsVawt------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ 359 (1267)
T KOG0783|consen 294 KSHSVAWT------------DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAF 359 (1267)
T ss_pred cceeeeee------------cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEE
Confidence 99999997 78999999985 9999877543 456755532 345799999999999999999999998
Q ss_pred eCCCCCCCCCCCCCCcceeEEecccc--cccEEEEEeCCCceeEEecCCeEEEEeCCCCCCCCCCCCCCcceeeeecccc
Q 001683 509 GSAVHGQLGNPKAKDRSITVVEGKLK--EEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALR 586 (1030)
Q Consensus 509 G~N~~GQLG~~~~~~~~p~~V~~~l~--~~~V~~Ia~G~~Hs~aLTsdG~Vy~WG~N~~GQLG~G~~~~~~~Pt~V~~l~ 586 (1030)
-.-..-.+......-+......+++. -..+.+..+...-.++||+-|+||.|-.+..- + +.-...|.++-
T Consensus 360 ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~----~~c~ftp~r~~--- 431 (1267)
T KOG0783|consen 360 ADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-R----TSCKFTPLRIF--- 431 (1267)
T ss_pred ecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-e----eeeecccceee---
Confidence 75433333222222222222222222 24466777777888999999999999865411 0 11223444443
Q ss_pred CCeeEEeeecCCccceeeecc
Q 001683 587 DRQVESVVCGSSITAAICLHK 607 (1030)
Q Consensus 587 ~~~V~~IacG~~hT~aI~~~k 607 (1030)
.|.+|+--.+.-++++.++
T Consensus 432 --~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 432 --EISDIAWTANSLILCTRDG 450 (1267)
T ss_pred --ehhhhhhccceEEEEecCc
Confidence 3556766666666666543
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=7.7e-25 Score=254.00 Aligned_cols=306 Identities=23% Similarity=0.315 Sum_probs=228.9
Q ss_pred eEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeecccc--CCCEEEEEecCCEEEEEEeCCeEEEEecC
Q 001683 212 IERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAV--MLDVQNISLGAKHAALVTKEGEVFCWGEG 289 (1030)
Q Consensus 212 ~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~--~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N 289 (1030)
..++|...+||+||.|. +..||.|.. .....|.++..+. ++-+.+|+.+..|++++++.|+||++|.+
T Consensus 135 ~~~~d~pndvy~wG~N~-N~tLGign~---------~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG 204 (1267)
T KOG0783|consen 135 HPVLDLPNDVYGWGTNV-NNTLGIGNG---------KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG 204 (1267)
T ss_pred ccccCCccceeEecccc-cccccccCC---------CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC
Confidence 35678889999999999 999999986 3455666665442 44478899999999999999999999999
Q ss_pred CCCcCCCCCCccccccEEecccCCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCCCCCcc-eeeceeeec-cCC
Q 001683 290 KDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRS-HWLPRKLFD-TLD 367 (1030)
Q Consensus 290 ~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~~~~~~-~~~P~~v~~-~l~ 367 (1030)
.+|+||+|+......|++|+.|.+.+|.+|++...|+++||++|-||+||.| +.+|||..+... ...|..|.. .++
T Consensus 205 ~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~k 282 (1267)
T KOG0783|consen 205 AGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRIK 282 (1267)
T ss_pred CCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhhc
Confidence 9999999998899999999999999999999999999999999999999999 668888765532 233444321 122
Q ss_pred Cc-cEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCC-CCcCCCeEeeecCCCeEEEEEecCCeEEEEEeeeccccc
Q 001683 368 GV-RVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNL-QNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCK 445 (1030)
Q Consensus 368 ~~-~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~-~~~~~P~~V~~l~~~~I~~IacG~~Ht~aLte~~~~~~~ 445 (1030)
+. +|+-|++|..|+++.|+. .||+||.| .||||..+. ..+..|+.+..+ ...|..|+|...-|+++++
T Consensus 283 g~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~------- 352 (1267)
T KOG0783|consen 283 GFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQ------- 352 (1267)
T ss_pred chhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEec-------
Confidence 32 799999999999999976 69999988 599998765 446678766433 3478999999999999984
Q ss_pred ccccCCeEEEEecCCCCCcCCCCCCceeeeeEeee----cccCceEEEEeccceeEEEeCCCeEEEEeCCCCCCCCCCCC
Q 001683 446 SNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTR----LVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKA 521 (1030)
Q Consensus 446 ~~~s~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~----l~~~~Iv~IacG~~htlaLt~dG~Vy~wG~N~~GQLG~~~~ 521 (1030)
++.+|++-+-..-.+. .....+.-..|.. +...++.+..+.....++||+-|+||.|-++..- +
T Consensus 353 ----~~~i~~~ady~~~k~~--~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~----- 420 (1267)
T KOG0783|consen 353 ----NNSIIAFADYNQVKLP--FNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-R----- 420 (1267)
T ss_pred ----CCcEEEEecccceecC--cchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-e-----
Confidence 8899988764322221 1111111122211 1123456667777888999999999999865321 1
Q ss_pred CCcceeEEecccccccEEEEEeCCCceeEEecCC
Q 001683 522 KDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGG 555 (1030)
Q Consensus 522 ~~~~p~~V~~~l~~~~V~~Ia~G~~Hs~aLTsdG 555 (1030)
. ..-..++....|.+|+--.+..+++|.||
T Consensus 421 ---~-~c~ftp~r~~~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 421 ---T-SCKFTPLRIFEISDIAWTANSLILCTRDG 450 (1267)
T ss_pred ---e-eeecccceeeehhhhhhccceEEEEecCc
Confidence 0 01111222334778888889999999999
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.2e-20 Score=220.84 Aligned_cols=367 Identities=20% Similarity=0.257 Sum_probs=231.8
Q ss_pred cccccCcccccccccCCcceEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccccCCCEEEEEecCC
Q 001683 193 RCPKNESHRLVTPTYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAK 272 (1030)
Q Consensus 193 ~~~~~~~s~vs~~s~Gs~~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~ 272 (1030)
|+++..--..+.+-.|.-.+..-..+|+||.-|.+...|..-.|. ......+| ..|++|+.|-+
T Consensus 472 ~L~~~~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t~~Gl~e~G~--------nWmEL~l~--------~~IVq~SVG~D 535 (3738)
T KOG1428|consen 472 FLPANLHPQTVDLHFTREMAFIQARSGKVYYAGNGTRFGLFETGN--------NWMELCLP--------EPIVQISVGID 535 (3738)
T ss_pred hhccccCchheecccchhhhhhhhcCccEEEecCccEEeEEccCC--------ceEEecCC--------CceEEEEeccc
Confidence 333333333444455554555667899999999877333332222 11333333 37899999987
Q ss_pred EEEEEE--eCCeEEEEecCCCCcCCCCCCccccccEEecccCCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCC
Q 001683 273 HAALVT--KEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGE 350 (1030)
Q Consensus 273 hs~~Lt--~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~ 350 (1030)
...++. .+|.++.-|... ..| .-+++..-...+|++|.+...---.+.++|++|..|....
T Consensus 536 ~~~~~~~A~~G~I~~v~D~k--~~~--------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm------- 598 (3738)
T KOG1428|consen 536 TIMFRSGAGHGWIASVDDKK--RNG--------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM------- 598 (3738)
T ss_pred hhheeeccCcceEEeccCcc--ccc--------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE-------
Confidence 776665 456566655321 111 1111112234578877655444457899999999987631
Q ss_pred CCCcceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCCCC-cCCCeEe-------------e
Q 001683 351 RRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQN-VSQPKEV-------------E 416 (1030)
Q Consensus 351 ~~~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~-~~~P~~V-------------~ 416 (1030)
.......+...+++.-|.+++.|..|.++++.+|.||+||-|..+|+|.-.... ...|..- .
T Consensus 599 ----~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~Ht 674 (3738)
T KOG1428|consen 599 ----RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHT 674 (3738)
T ss_pred ----EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccce
Confidence 111112233347788899999999999999999999999999999999743222 2222211 1
Q ss_pred ecCCCeEEEEEecCCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCC--------CC-------------------
Q 001683 417 SLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHV--------DG------------------- 469 (1030)
Q Consensus 417 ~l~~~~I~~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g--------~~------------------- 469 (1030)
.+.+...+...||.-...-+. +...-...|.+-.+|.++.+.+--| ..
T Consensus 675 W~~dt~~VCa~CG~Cs~~Gva-----C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~Q 749 (3738)
T KOG1428|consen 675 WLTDTPSVCAQCGLCSARGVA-----CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQ 749 (3738)
T ss_pred eecCCcchhhhcccccccccc-----cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheeccccccc
Confidence 111222233334432211111 0111234677777777766554211 10
Q ss_pred CceeeeeEeee---cccCceEEEEeccceeEEEeCCCeEEEEeCCCCCCCCCCCCCC-cceeEEecccccccEEEEEeCC
Q 001683 470 ERKLLPTCVTR---LVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKD-RSITVVEGKLKEEFVKGISSGS 545 (1030)
Q Consensus 470 ~~~~~P~~V~~---l~~~~Iv~IacG~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~-~~p~~V~~~l~~~~V~~Ia~G~ 545 (1030)
...+.|..|.. .-+.++.+|+||..|+++|.+|++||+||+|.+||||.++... ..|..|.. +.+..|++|++|.
T Consensus 750 R~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGS 828 (3738)
T KOG1428|consen 750 RSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGS 828 (3738)
T ss_pred ccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCC
Confidence 11223433332 2356799999999999999999999999999999999998766 45666664 5677899999999
Q ss_pred CceeEEecCCeEEEEeCCCCCCCCCCCCCC---cceeeeecccc---CCeeEEeeecCCccce
Q 001683 546 YHVAVLTSGGSVYTWGKNANGQLGLGDSQE---RETPTFVEALR---DRQVESVVCGSSITAA 602 (1030)
Q Consensus 546 ~Hs~aLTsdG~Vy~WG~N~~GQLG~G~~~~---~~~Pt~V~~l~---~~~V~~IacG~~hT~a 602 (1030)
+|++++..||.||+||.=..||||..-.+. ...|.+|..+. +.....|.+.++.+++
T Consensus 829 NHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 829 NHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred CceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCccee
Confidence 999999999999999999999999854332 34677777553 2345566666554443
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.78 E-value=6e-18 Score=201.91 Aligned_cols=249 Identities=24% Similarity=0.356 Sum_probs=171.9
Q ss_pred CCEEEEEecCCEEEEEEeCCeEEEEecCCCCcCCCCCCccccccEEecccCCCcEEEEEeCCCeEEEEeeCCCEEEecCC
Q 001683 262 LDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHN 341 (1030)
Q Consensus 262 ~~I~~Ia~G~~hs~~Lt~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n 341 (1030)
.+|+.|.+...---++.+||++|+.|...-. . ...-..+..|.+.-|.+++.|..|+++|+.+|+||+||.|
T Consensus 569 rKIv~v~~s~~VY~~vSenGkifM~G~~tm~-------~-n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlN 640 (3738)
T KOG1428|consen 569 RKIVHVCASGHVYGYVSENGKIFMGGLHTMR-------V-NVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLN 640 (3738)
T ss_pred ceeEEEeeeeEEEEEEccCCeEEeecceeEE-------e-cchHHHhhccccceeehhhccccceeEEEeCCeEEEEecC
Confidence 3677765544444678999999999963210 0 0123456778888999999999999999999999999999
Q ss_pred CCCCCccCCCCCcceeeceeeec-------------cCCCccEEEEEeCCCceEEE------eeCCcEEEEecCCCcccC
Q 001683 342 NHGADLVGERRSRSHWLPRKLFD-------------TLDGVRVSKVACGEWHTAIV------STSGQLFTYGDGTFGVLG 402 (1030)
Q Consensus 342 ~~~~g~LG~~~~~~~~~P~~v~~-------------~l~~~~Iv~IacG~~Hs~aL------T~dG~Vy~wG~N~~GQLG 402 (1030)
+.+|.|.-.........+..+ .+.+..-+-..||.-...-+ --.|.+-.+|.+..+.+-
T Consensus 641 --N~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~ 718 (3738)
T KOG1428|consen 641 --NMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLR 718 (3738)
T ss_pred --CcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCccccee
Confidence 667777643322221111111 01111222222332111110 124556666655544331
Q ss_pred CC--------C-------------------CCCcCCCeEeee---cCCCeEEEEEecCCeEEEEEeeecccccccccCCe
Q 001683 403 HG--------N-------------------LQNVSQPKEVES---LRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGK 452 (1030)
Q Consensus 403 ~g--------~-------------------~~~~~~P~~V~~---l~~~~I~~IacG~~Ht~aLte~~~~~~~~~~s~G~ 452 (1030)
-| . ......|..|.. ..++++.+|+||.+|+++|. +|++
T Consensus 719 CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~-----------sd~~ 787 (3738)
T KOG1428|consen 719 CGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLA-----------SDRR 787 (3738)
T ss_pred ccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEe-----------cCCc
Confidence 11 0 012234444432 23468999999999999997 4999
Q ss_pred EEEEecCCCCCcCCCCCCceeeeeEeeecccCceEEEEeccceeEEEeCCCeEEEEeCCCCCCCCCCCCCC----cceeE
Q 001683 453 LFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKD----RSITV 528 (1030)
Q Consensus 453 Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IacG~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~----~~p~~ 528 (1030)
||++|.|.+||||+|+...+..|+.|..+.+..|+||++|.+||+++..||.||+||.-..|||+.+..+. ..|.+
T Consensus 788 VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~ 867 (3738)
T KOG1428|consen 788 VFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEK 867 (3738)
T ss_pred EEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876554 34555
Q ss_pred Eec
Q 001683 529 VEG 531 (1030)
Q Consensus 529 V~~ 531 (1030)
+.+
T Consensus 868 v~~ 870 (3738)
T KOG1428|consen 868 VSG 870 (3738)
T ss_pred CCC
Confidence 544
No 10
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=3.9e-14 Score=136.85 Aligned_cols=77 Identities=27% Similarity=0.562 Sum_probs=69.4
Q ss_pred CcceEEEeeCCc--cceEeccccceeeccccccccccCCCC----CCCCCeEEEEEcCC--CccceeecCCHHHHHHHHH
Q 001683 2 DEKFLIWYSGQK--EKQLRLNSVTKIIMGQRTVNFQCQPQP----DRKQQSFSIIYANG--ERSLDLICKDKVQAESWFL 73 (1030)
Q Consensus 2 d~~~l~w~~~~k--~~~~~l~~v~~v~~G~~t~~f~~~~~~----~~~~~~Fsii~~~~--~~sLdLv~~~~~ea~~W~~ 73 (1030)
|...|+|.+.++ .+.|.|++|++||.|++++.|+++... .+|++||||||+.+ .++|||||.|+++|+.|+.
T Consensus 31 ~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~ 110 (115)
T cd01248 31 KGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVS 110 (115)
T ss_pred CCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEEEEECCHHHHHHHHH
Confidence 567899998775 467999999999999999999988654 48999999999988 8999999999999999999
Q ss_pred HHHHH
Q 001683 74 GLRAA 78 (1030)
Q Consensus 74 GL~~l 78 (1030)
||++|
T Consensus 111 gL~~L 115 (115)
T cd01248 111 GLRKL 115 (115)
T ss_pred HHhhC
Confidence 99986
No 11
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.33 E-value=5.2e-13 Score=101.62 Aligned_cols=33 Identities=52% Similarity=0.766 Sum_probs=30.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHhhhhcchhhh
Q 001683 849 REEAEKCKAAKEIIKALAVRLHTLSEKISAAKE 881 (1030)
Q Consensus 849 ~ee~~k~kaake~ik~l~~qlk~~~e~lp~~~~ 881 (1030)
+|||+|||||||||||||+|||+|+||||++..
T Consensus 1 ~eEaak~kaaKe~IKsLt~QlK~maekl~~~~~ 33 (39)
T PF13713_consen 1 AEEAAKCKAAKEVIKSLTAQLKDMAEKLPGAYR 33 (39)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 489999999999999999999999999997654
No 12
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.19 E-value=3.8e-12 Score=111.61 Aligned_cols=68 Identities=37% Similarity=0.846 Sum_probs=47.7
Q ss_pred ccccccCCCCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhh
Q 001683 606 HKSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQ 673 (1030)
Q Consensus 606 ~kwv~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~ 673 (1030)
+.|+++.+...|+.|...|++.+++|||+.||.+||..|++.+...+.......+++|||+.||..|+
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 46999999999999999999999999999999999999999987665333456689999999999985
No 13
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.13 E-value=1.5e-11 Score=146.26 Aligned_cols=105 Identities=25% Similarity=0.439 Sum_probs=87.5
Q ss_pred CcceEEEeeCCc---cceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHH
Q 001683 2 DEKFLIWYSGQK---EKQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAA 78 (1030)
Q Consensus 2 d~~~l~w~~~~k---~~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~l 78 (1030)
|..++.|.+..+ +..++|++|++||.|++|+.||++.+..++++||||||++++++|||||.++++|+.||+||++|
T Consensus 42 d~~~~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~~~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l 121 (746)
T KOG0169|consen 42 DGSTVRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPEDRCFSIIFKDRYESLDLIANSKEDANIWVSGLRKL 121 (746)
T ss_pred ccceEEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCcceeEEEEeccccccccccCCCHHHHHHHhhhHHHH
Confidence 667777775443 23499999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccccccccccCcccccCCCcccccccCccccccccccccc
Q 001683 79 ISSCRRSRTFSCLREKRGVQSCVSSPASYIRRKHNLGLLEDATELSQ 125 (1030)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1030)
++.....+. ..++..|+.+.|..+|...
T Consensus 122 ~s~~~~~~~-------------------~~~~~~wi~~~~~~ad~~~ 149 (746)
T KOG0169|consen 122 ISRSKSMRQ-------------------RSRREHWIHSIFQEADKNK 149 (746)
T ss_pred Hhccchhhh-------------------cchHHHHHHHHHHHHcccc
Confidence 998663221 1566778877777776533
No 14
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.09 E-value=1.2e-10 Score=95.71 Aligned_cols=50 Identities=44% Similarity=0.742 Sum_probs=47.9
Q ss_pred CCeEEEEeCCCCCCCC-CCCCCCcceeeeeccccCCeeEEeeecCCcccee
Q 001683 554 GGSVYTWGKNANGQLG-LGDSQERETPTFVEALRDRQVESVVCGSSITAAI 603 (1030)
Q Consensus 554 dG~Vy~WG~N~~GQLG-~G~~~~~~~Pt~V~~l~~~~V~~IacG~~hT~aI 603 (1030)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||..||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8889999999999999999999999999999986
No 15
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.1e-12 Score=154.03 Aligned_cols=191 Identities=29% Similarity=0.449 Sum_probs=150.8
Q ss_pred CceeeccccCCCEEEEEecCCEEEEEEeCCeEEEEecCCCCcCCCCCCccccccEEecccCCCcEEEEEeCCCeEEEEee
Q 001683 252 LPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTK 331 (1030)
Q Consensus 252 ~P~~i~~~~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~ 331 (1030)
.|+.+.......|.+|+||..|+++++..|++|+||.|.+||+|++.......|.+++.+.+.+..+|++|..|++++..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 34445555566899999999999999999999999999999999995554444999999999999999999999999875
Q ss_pred CCCEEEecCCCCCCCccCCCCCcceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCCCCcCC
Q 001683 332 SGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQ 411 (1030)
Q Consensus 332 dG~VY~WG~n~~~~g~LG~~~~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~~~~ 411 (1030)
|+++++.+|.++.+|.+..||+||+.......
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 99999999999999999999999988888888
Q ss_pred CeEeeecCCCeEEEEEecCCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCCCCCceeeeeEeee---cccCceEE
Q 001683 412 PKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTR---LVDFDFVQ 488 (1030)
Q Consensus 412 P~~V~~l~~~~I~~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~---l~~~~Iv~ 488 (1030)
|..+..+-+..+..|+||..|+.++.. .-|++|..|.+..|. +.-.....+..... ..+..+.+
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~----------~l~qsf~~~~~~sGk---~~i~s~s~~~~l~~~d~~~~~~~~~ 182 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVP----------RLGQSFSFGKGASGK---GVIVSLSGEDLLRDHDSEKDHRCSL 182 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhh----------hhcceeecccCCCCC---ceeeccchhhhcccccHHHHHHHHH
Confidence 988888888899999999999999975 679999999888761 00000000000000 01123455
Q ss_pred EEeccceeEEEeCCC
Q 001683 489 ASCGRMLTVGLTGLG 503 (1030)
Q Consensus 489 IacG~~htlaLt~dG 503 (1030)
+..|.+.+..|...+
T Consensus 183 ~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 183 AFAGGDQTFSLSSKG 197 (850)
T ss_pred HhcCCCceEEEEeec
Confidence 778888888776554
No 16
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.01 E-value=8e-11 Score=129.33 Aligned_cols=69 Identities=30% Similarity=0.692 Sum_probs=62.3
Q ss_pred eeeccccccCCCCCCccccc-cccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhhc
Q 001683 603 ICLHKSISVGDQSSCSQCRM-PFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQK 674 (1030)
Q Consensus 603 I~~~kwv~~~d~s~C~~C~~-~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~~ 674 (1030)
...+.|+++.+...|+.|+. .|++..||||||+||.+||..|+.++ +.+.....+|.|||+.||..|.+
T Consensus 157 ~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~---~~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 157 NSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNR---FLLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred CcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCc---ccccccCCCCceecHHHHHHHhc
Confidence 34567999999999999999 89999999999999999999999998 55556678999999999999976
No 18
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.96 E-value=9.2e-10 Score=90.34 Aligned_cols=50 Identities=42% Similarity=0.757 Sum_probs=47.8
Q ss_pred CCeEEEEecCCCCcCC-CCCCccccccEEecccCCCcEEEEEeCCCeEEEE
Q 001683 280 EGEVFCWGEGKDGRLG-HKVNMDVSCPKLVECLSGINVQSVSCGEFQTCAL 329 (1030)
Q Consensus 280 dG~VysWG~N~~GQLG-~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaL 329 (1030)
||+||+||.|.+|||| .+.......|++|+.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 8888899999999999999999999999999987
No 19
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=98.94 E-value=1.6e-09 Score=106.06 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=64.1
Q ss_pred CCcceEEEeeCCc---------cceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHH
Q 001683 1 MDEKFLIWYSGQK---------EKQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESW 71 (1030)
Q Consensus 1 ~d~~~l~w~~~~k---------~~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W 71 (1030)
+|..+|.|.+.++ .+.+.|.+|.+|..|..++.|. .+++.+|||++..+.|+|||+|++++++++|
T Consensus 39 ~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~-----~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W 113 (123)
T PF12814_consen 39 PYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGL-----KKPDHNKSIIIVTPDRSLDLTAPSRERHEIW 113 (123)
T ss_pred CCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccc-----cccccceEEEEEcCCeEEEEEeCCHHHHHHH
Confidence 4778999997531 2459999999999999998887 2233778888888999999999999999999
Q ss_pred HHHHHHHHhc
Q 001683 72 FLGLRAAISS 81 (1030)
Q Consensus 72 ~~GL~~li~~ 81 (1030)
+.||++|+.+
T Consensus 114 ~~aL~~L~~~ 123 (123)
T PF12814_consen 114 FNALRYLLQK 123 (123)
T ss_pred HHHHHHHhhC
Confidence 9999999863
No 20
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.8e-10 Score=133.42 Aligned_cols=65 Identities=42% Similarity=0.941 Sum_probs=57.4
Q ss_pred CCCCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhhccCCc
Q 001683 612 GDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQKITHS 678 (1030)
Q Consensus 612 ~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~~~~~~ 678 (1030)
.|...|..|...|+++.++|||++||.+||..|+++...++.+ ...+|+|||+.||+.|.+.+..
T Consensus 163 ~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~--Gi~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 163 IDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKL--GIEKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred ccccccceeeeeeeeccccccccccchhhccCccccccCcccc--cccccceehhhhHHHhhhcccc
Confidence 3556799999999999999999999999999999999888877 4448999999999999887653
No 21
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.85 E-value=1.5e-09 Score=127.04 Aligned_cols=74 Identities=27% Similarity=0.626 Sum_probs=54.5
Q ss_pred eeeccccccCC-CCCCcccccccccc-----ccccccccCCceeeccCCCCcccc--ccC----CCCCCCCcccChhhHH
Q 001683 603 ICLHKSISVGD-QSSCSQCRMPFGFR-----RKKHNCYNCGLHFCSACSTKKIIN--ASL----TPNKGKPSRVCDTCYN 670 (1030)
Q Consensus 603 I~~~kwv~~~d-~s~C~~C~~~F~f~-----rrrHhC~~CG~vfC~~Css~k~~~--~~l----~p~~~~p~RVC~~C~~ 670 (1030)
+..+.|+++.+ ...|+.|++.|.+. .|+||||+||.+||..||+++... ..+ .+....++|||+.||.
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 34567888776 47899999999754 489999999999999999987532 112 1222246799999997
Q ss_pred hhhccC
Q 001683 671 HLQKIT 676 (1030)
Q Consensus 671 ~l~~~~ 676 (1030)
+++...
T Consensus 528 q~EnLl 533 (1374)
T PTZ00303 528 EYETVS 533 (1374)
T ss_pred HHHhHH
Confidence 765433
No 22
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.79 E-value=1.5e-09 Score=121.73 Aligned_cols=72 Identities=33% Similarity=0.669 Sum_probs=62.5
Q ss_pred CccceeeeccccccCCCCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCcccCh-----hhHHh
Q 001683 598 SITAAICLHKSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCD-----TCYNH 671 (1030)
Q Consensus 598 ~hT~aI~~~kwv~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~-----~C~~~ 671 (1030)
..++-+..+.|+++.+...||.|..+|.++|+|||||+||.+||..|+....+.+.. ...+..|||. +||..
T Consensus 885 stsatlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~--gl~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 885 STSATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEH--GLDKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred ccccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCccc--ccccCceecCCcccccceee
Confidence 345566778899999999999999999999999999999999999999988777665 4458999999 78765
No 23
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.5e-10 Score=138.50 Aligned_cols=183 Identities=26% Similarity=0.424 Sum_probs=141.9
Q ss_pred CCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCCCCcCCCeEeeecCCCeEEEEEecCCeEEEEEeeecccccc
Q 001683 367 DGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKS 446 (1030)
Q Consensus 367 ~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~Ht~aLte~~~~~~~~ 446 (1030)
...+|.+++||.+|+++++..|++|.||.|.+||+|++.......|..++.+.+.+...|++|..|++++.- ....
T Consensus 12 ~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~----~~~~ 87 (850)
T KOG0941|consen 12 NYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS----HTVL 87 (850)
T ss_pred hhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh----chhh
Confidence 345799999999999999999999999999999999995544444999999999999999999999999963 3455
Q ss_pred cccCCeEEEEecCCCCCcCCCCCCceeeeeEeeecccCceEEEEeccceeEEEe-CCCeEEEEeCCCCC--CCCCCCCCC
Q 001683 447 NAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLT-GLGKVYTMGSAVHG--QLGNPKAKD 523 (1030)
Q Consensus 447 ~~s~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IacG~~htlaLt-~dG~Vy~wG~N~~G--QLG~~~~~~ 523 (1030)
.+..|.+|++|....||+|+........|..+..+....+.+|+||..|+++.- .-|++|.+|.+..| ++-......
T Consensus 88 lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s~~~ 167 (850)
T KOG0941|consen 88 LTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLSGED 167 (850)
T ss_pred cchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccchhh
Confidence 667999999999999999998788888899888888889999999999998764 56999999988776 111000000
Q ss_pred cceeEEecccccccEEEEEeCCCceeEEecCC
Q 001683 524 RSITVVEGKLKEEFVKGISSGSYHVAVLTSGG 555 (1030)
Q Consensus 524 ~~p~~V~~~l~~~~V~~Ia~G~~Hs~aLTsdG 555 (1030)
--.-.+.-....+..+..|++.++.|...+
T Consensus 168 --~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 168 --LLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred --hcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 000000011223556788888888776554
No 24
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.69 E-value=2.1e-08 Score=73.29 Aligned_cols=30 Identities=53% Similarity=0.958 Sum_probs=26.1
Q ss_pred EEEEEeCCCceeEEecCCeEEEEeCCCCCC
Q 001683 538 VKGISSGSYHVAVLTSGGSVYTWGKNANGQ 567 (1030)
Q Consensus 538 V~~Ia~G~~Hs~aLTsdG~Vy~WG~N~~GQ 567 (1030)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 25
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.63 E-value=5.2e-08 Score=71.27 Aligned_cols=30 Identities=40% Similarity=0.937 Sum_probs=26.0
Q ss_pred EEEEEecCCEEEEEEeCCeEEEEecCCCCc
Q 001683 264 VQNISLGAKHAALVTKEGEVFCWGEGKDGR 293 (1030)
Q Consensus 264 I~~Ia~G~~hs~~Lt~dG~VysWG~N~~GQ 293 (1030)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 26
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.60 E-value=2.5e-08 Score=84.07 Aligned_cols=55 Identities=51% Similarity=1.130 Sum_probs=48.0
Q ss_pred CCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHH
Q 001683 614 QSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYN 670 (1030)
Q Consensus 614 ~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~ 670 (1030)
...|+.|+..|++..++|||+.||.+||..|+..+...+.. ...+|+|||+.||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 35799999999999999999999999999999998665443 45689999999985
No 27
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=97.81 E-value=5.6e-06 Score=102.05 Aligned_cols=71 Identities=18% Similarity=0.413 Sum_probs=53.2
Q ss_pred eeccccccCCCCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCcc---cChhhHHhhhc
Q 001683 604 CLHKSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSR---VCDTCYNHLQK 674 (1030)
Q Consensus 604 ~~~kwv~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~R---VC~~C~~~l~~ 674 (1030)
..+.|+++....-||.|.+.|.+..||||||+||.++|..|++.+..+.-+.+...+-.- +|.+|-..+.+
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~e~~~rv~nV~s~~~~~~~m~~r 620 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLSESEGRVSNVDSLESPEAEMSTR 620 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcCcccccccccccccCccHhhccC
Confidence 457799999999999999999999999999999999999999998544444333333222 33445555433
No 28
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=97.79 E-value=3.6e-06 Score=95.01 Aligned_cols=68 Identities=25% Similarity=0.664 Sum_probs=53.3
Q ss_pred cccccCCCCCCccccccccccccccccccCCceeeccCCCCccc------------cccCC--------CCCCCCcccCh
Q 001683 607 KSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKII------------NASLT--------PNKGKPSRVCD 666 (1030)
Q Consensus 607 kwv~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~------------~~~l~--------p~~~~p~RVC~ 666 (1030)
.|+.+.+...|..|...|+.++|+||||-||.|.|..|+-.-.. -.... +....+.|+|.
T Consensus 173 pW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~ 252 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCM 252 (505)
T ss_pred cccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHH
Confidence 59999999999999999999999999999999999999643220 00011 22335789999
Q ss_pred hhHHhhhc
Q 001683 667 TCYNHLQK 674 (1030)
Q Consensus 667 ~C~~~l~~ 674 (1030)
.|...|-.
T Consensus 253 hCl~~L~~ 260 (505)
T KOG1842|consen 253 HCLDNLFR 260 (505)
T ss_pred HHHHHHHH
Confidence 99998854
No 29
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.61 E-value=2e-05 Score=94.02 Aligned_cols=70 Identities=19% Similarity=0.416 Sum_probs=63.6
Q ss_pred cceEeccccceeeccccccccccCCC--CCCCCCeEEEEEcCC--CccceeecCCHHHHHHHHHHHHHHHhcCC
Q 001683 14 EKQLRLNSVTKIIMGQRTVNFQCQPQ--PDRKQQSFSIIYANG--ERSLDLICKDKVQAESWFLGLRAAISSCR 83 (1030)
Q Consensus 14 ~~~~~l~~v~~v~~G~~t~~f~~~~~--~~~~~~~Fsii~~~~--~~sLdLv~~~~~ea~~W~~GL~~li~~~~ 83 (1030)
+..+.|..|++||+|+.+..|+||.+ ..++.+||.|.|+.. -++|-|||.+++||+.|+.||++|+...-
T Consensus 61 egai~i~eikeirpgk~skdfdry~~~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dtl 134 (1267)
T KOG1264|consen 61 EGAIDIREIKEIRPGKNSKDFDRYKRAFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDTL 134 (1267)
T ss_pred cceeeeeeeeeccCCccchhHHHHHHHhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhhc
Confidence 56799999999999999999999986 478899999999874 68999999999999999999999998653
No 30
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=3.1e-05 Score=86.93 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=56.7
Q ss_pred eccccccCCCCCCcccccccc-ccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhh
Q 001683 605 LHKSISVGDQSSCSQCRMPFG-FRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQ 673 (1030)
Q Consensus 605 ~~kwv~~~d~s~C~~C~~~F~-f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~ 673 (1030)
.+.|++.+....|++|...|+ ...+|||||.|+.+||..|+-.+...+.. +....++|||+.|+..|.
T Consensus 151 ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p-~a~d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 151 APVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVP-FAADPLQRVLDSCAFNLE 219 (473)
T ss_pred CccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCC-cccCCHHHHHhhHhhccC
Confidence 467888999999999999998 88899999999999999998765443322 344579999999999994
No 31
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.41 E-value=4.5e-05 Score=84.21 Aligned_cols=81 Identities=26% Similarity=0.665 Sum_probs=59.9
Q ss_pred EeeecCCccceee--------eccccccCCCCCCcccccccccc-----------ccccccccCCceeeccCCCCccccc
Q 001683 592 SVVCGSSITAAIC--------LHKSISVGDQSSCSQCRMPFGFR-----------RKKHNCYNCGLHFCSACSTKKIINA 652 (1030)
Q Consensus 592 ~IacG~~hT~aI~--------~~kwv~~~d~s~C~~C~~~F~f~-----------rrrHhC~~CG~vfC~~Css~k~~~~ 652 (1030)
-++||.+--+++- .+.|+ +...|..|.++|.|. -+.||||.||..+|..|++++...+
T Consensus 255 l~S~~edg~i~~w~mn~~r~etpewl---~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p 331 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVETPEWL---DSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYP 331 (404)
T ss_pred eeeccCCCeEEEEeccceeecCcccc---ccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccc
Confidence 4566655555442 23343 445688999998643 3469999999999999999997776
Q ss_pred cCCCCCCCCcccChhhHHhhhccCC
Q 001683 653 SLTPNKGKPSRVCDTCYNHLQKITH 677 (1030)
Q Consensus 653 ~l~p~~~~p~RVC~~C~~~l~~~~~ 677 (1030)
.+ ...-.+|+|++||..++-.++
T Consensus 332 ~m--g~e~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 332 TM--GFEFSVRVCDSCYPTIKDEER 354 (404)
T ss_pred cc--cceeEEEEecccchhhhcCCC
Confidence 66 344789999999999987665
No 32
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=96.69 E-value=0.00061 Score=80.00 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=63.3
Q ss_pred cCCCCCCcccccccc-ccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhhccCCcccccccccCCC
Q 001683 611 VGDQSSCSQCRMPFG-FRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQKITHSGRLLKQENQSP 689 (1030)
Q Consensus 611 ~~d~s~C~~C~~~F~-f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~~~~~~~~~~~~~~~~~ 689 (1030)
......|+.|..+|+ .+.+||||..||.++|..|+..+ ..+.++..+..|||.+||.....+..+.. .++
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~---~~l~~~~s~ssrv~~~~~~~~~~a~~s~~------~rr 482 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFM---AKLSYDNSRSSRVCMDRYLTPSGAPGSPP------KRR 482 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchh---hhhcccccchhhhhhhhccCCCCCCCCch------hcc
Confidence 667788999999997 88889999999999999999988 55566778999999999998877665321 344
Q ss_pred CccccccCCCc
Q 001683 690 RNLLNLQGSLS 700 (1030)
Q Consensus 690 ~~~~~~~~~~~ 700 (1030)
+.+++.+.+..
T Consensus 483 ~~~l~~~~a~~ 493 (623)
T KOG4424|consen 483 QSILEIELATV 493 (623)
T ss_pred ccccccccccc
Confidence 55555544443
No 33
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.97 E-value=0.085 Score=49.78 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=48.8
Q ss_pred cceEEEeeCCcc---ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 3 EKFLIWYSGQKE---KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 3 ~~~l~w~~~~k~---~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
...|.|+...+. -.|+|+.|..|..-... ++....+|.||+ ..++|-|.|.+++|++.||.-|+.
T Consensus 30 ~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~--------~~~~~~~fqivt--~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 30 TTHLSWAKDVQCKKSALIKLAAIKGTEPLSDK--------SFVNVDIITIVC--EDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred CCEEEEECCCCCceeeeEEccceEEEEEcCCc--------ccCCCceEEEEe--CCCeEEEECCCHHHHHHHHHHHhc
Confidence 456888865532 34899999988754332 122246999999 457999999999999999999875
No 34
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=94.72 E-value=0.14 Score=45.97 Aligned_cols=67 Identities=25% Similarity=0.422 Sum_probs=51.5
Q ss_pred ceEEEeeCCc-------cceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHH
Q 001683 4 KFLIWYSGQK-------EKQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLR 76 (1030)
Q Consensus 4 ~~l~w~~~~k-------~~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~ 76 (1030)
..|.++.... ...+.|+++ .|..+...+. .....+|.|.++++ +.|-+.|++++|++.|+..|+
T Consensus 28 ~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-------~~~~~~f~l~~~~~-~~~~f~~~s~~~~~~W~~~i~ 98 (102)
T smart00233 28 STLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-------AKKPHCFEIKTADR-RSYLLQAESEEEREEWVDALR 98 (102)
T ss_pred CEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-------CCCceEEEEEecCC-ceEEEEcCCHHHHHHHHHHHH
Confidence 4566665431 245799998 7777766544 45678999999655 699999999999999999999
Q ss_pred HHH
Q 001683 77 AAI 79 (1030)
Q Consensus 77 ~li 79 (1030)
.++
T Consensus 99 ~~~ 101 (102)
T smart00233 99 KAI 101 (102)
T ss_pred Hhh
Confidence 875
No 35
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=94.58 E-value=0.16 Score=46.44 Aligned_cols=71 Identities=17% Similarity=0.396 Sum_probs=55.4
Q ss_pred ceEEEeeCCc-------cceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHH
Q 001683 4 KFLIWYSGQK-------EKQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLR 76 (1030)
Q Consensus 4 ~~l~w~~~~k-------~~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~ 76 (1030)
..|+++.... ...|.|.++ .|+.....+. ....+...||.|.+.++ +++-|.|.|++|.+.|+..|+
T Consensus 27 ~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~----~~~~~~~~~f~i~~~~~-~~~~~~~~s~~~~~~W~~~i~ 100 (104)
T PF00169_consen 27 SYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDF----LSNKKRKNCFEITTPNG-KSYLFSAESEEERKRWIQAIQ 100 (104)
T ss_dssp TEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTS----TSTSSSSSEEEEEETTS-EEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEecCccccceeeeEEEEecCc-eEEEcCcccc----ccccCCCcEEEEEeCCC-cEEEEEcCCHHHHHHHHHHHH
Confidence 4566664433 134899999 8888777754 14567789999999765 799999999999999999999
Q ss_pred HHHh
Q 001683 77 AAIS 80 (1030)
Q Consensus 77 ~li~ 80 (1030)
.+++
T Consensus 101 ~~~~ 104 (104)
T PF00169_consen 101 KAIK 104 (104)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8873
No 36
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=93.48 E-value=0.009 Score=70.25 Aligned_cols=65 Identities=32% Similarity=0.633 Sum_probs=50.8
Q ss_pred eccccccC----CCCCCccc-cccccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHh
Q 001683 605 LHKSISVG----DQSSCSQC-RMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNH 671 (1030)
Q Consensus 605 ~~kwv~~~----d~s~C~~C-~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~ 671 (1030)
.+.|.++. ....|+.| +..|..+.|+|||+.||...|.+|..++.++..- ....|.++||.|+..
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~--gse~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDC--GSENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcc--cccCcccccccccch
Confidence 45677666 56778775 5568877889999999999999999988766544 235799999999965
No 37
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=93.19 E-value=0.31 Score=46.53 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=48.3
Q ss_pred cceEEEeeCCcc-----c-eEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHH
Q 001683 3 EKFLIWYSGQKE-----K-QLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLR 76 (1030)
Q Consensus 3 ~~~l~w~~~~k~-----~-~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~ 76 (1030)
..+|.+|..+.+ + .|.|..|..|..-.... ..+......+||.|+. ..+++-|.|.|++|.+.||..|+
T Consensus 30 ~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~---~~~~~~~~~~~F~i~t--~~r~~yl~A~s~~er~~WI~ai~ 104 (106)
T cd01238 30 KSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEK---NPPIPERFKYPFQVVH--DEGTLYVFAPTEELRKRWIKALK 104 (106)
T ss_pred CCEEEEECCCcccccCcceeEECCcceEEEEecCCc---CcccccccCccEEEEe--CCCeEEEEcCCHHHHHHHHHHHH
Confidence 457888866533 1 38888887665422211 0011223468999999 45789999999999999999998
Q ss_pred H
Q 001683 77 A 77 (1030)
Q Consensus 77 ~ 77 (1030)
.
T Consensus 105 ~ 105 (106)
T cd01238 105 Q 105 (106)
T ss_pred h
Confidence 5
No 38
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=93.19 E-value=0.35 Score=45.09 Aligned_cols=72 Identities=15% Similarity=0.359 Sum_probs=48.5
Q ss_pred cceEEEeeCCcc----ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHH
Q 001683 3 EKFLIWYSGQKE----KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAA 78 (1030)
Q Consensus 3 ~~~l~w~~~~k~----~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~l 78 (1030)
...|.+|.+.++ ..|.|+.+..|...+.... -+.......+|.|.- ..|++-|.|.+++|++.||..|+.+
T Consensus 26 ~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~---~~~~~~~~~~f~i~t--~~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 26 KHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMG---APKHTSRKGFFDLKT--SKRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred CCEEEEecCCCCCccceEEEcceeEEEeecCCCCC---CCCCCCCceEEEEEe--CCceEEEECCCHHHHHHHHHHHHhh
Confidence 447888865432 3489999888875432210 011122345566544 5789999999999999999999987
Q ss_pred H
Q 001683 79 I 79 (1030)
Q Consensus 79 i 79 (1030)
|
T Consensus 101 i 101 (101)
T cd01235 101 I 101 (101)
T ss_pred C
Confidence 5
No 39
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.25 E-value=0.26 Score=43.72 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=40.6
Q ss_pred eEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 16 QLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 16 ~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
.|.|.+ ..|......+ ....+|.|++.++ +++.|.|++++|++.|+..|+.
T Consensus 45 ~i~l~~-~~v~~~~~~~---------~~~~~f~i~~~~~-~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 45 SIPLSG-AEVEESPDDS---------GRKNCFEIRTPDG-RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred eEEcCC-CEEEECCCcC---------CCCcEEEEecCCC-cEEEEEeCCHHHHHHHHHHHhc
Confidence 367776 5555554443 5679999999765 9999999999999999999975
No 40
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.02 E-value=0.54 Score=44.61 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=49.0
Q ss_pred ceEEEeeCCc----c-ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 4 KFLIWYSGQK----E-KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 4 ~~l~w~~~~k----~-~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
..|.|+..+. . -.|.|+++..|+...+.. +...-..||.|++ ..|+.-|+|.|++|++.||.-|.-
T Consensus 29 ~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~------~~~~~~~~Fei~t--p~rt~~l~A~se~e~e~WI~~i~~ 99 (101)
T cd01264 29 AQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKR------RDRSLPKAFEIFT--ADKTYILKAKDEKNAEEWLQCLNI 99 (101)
T ss_pred CEEEEEeccCccCCCCceEEcccceEEeeccccc------cccccCcEEEEEc--CCceEEEEeCCHHHHHHHHHHHHh
Confidence 4577776542 2 358999999998875441 1111246999999 669999999999999999998763
No 41
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=90.94 E-value=0.74 Score=43.37 Aligned_cols=69 Identities=12% Similarity=0.234 Sum_probs=46.3
Q ss_pred cceEEEeeCCcc----ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHH
Q 001683 3 EKFLIWYSGQKE----KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAA 78 (1030)
Q Consensus 3 ~~~l~w~~~~k~----~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~l 78 (1030)
...|.++...++ ..|.|.+++-...-.+...+ ....||.|+- ..|++=|.|.|++|.+.||..|+.+
T Consensus 27 ~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~-------~~~~~F~I~t--~~rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 27 RPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMV-------KGPNTFAVCT--KHRGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred CCEEEEEccCCCccEeeEEEecccEEEEccchhhhc-------CCCcEEEEEC--CCCEEEEEcCCHHHHHHHHHHhhhh
Confidence 356777766542 34677765332221111111 1246999976 5799999999999999999999988
Q ss_pred Hh
Q 001683 79 IS 80 (1030)
Q Consensus 79 i~ 80 (1030)
+.
T Consensus 98 ~~ 99 (100)
T cd01233 98 YA 99 (100)
T ss_pred hc
Confidence 75
No 42
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=89.86 E-value=0.19 Score=49.00 Aligned_cols=51 Identities=27% Similarity=0.820 Sum_probs=40.7
Q ss_pred CCCCCcccccccccc-ccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhh
Q 001683 613 DQSSCSQCRMPFGFR-RKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHL 672 (1030)
Q Consensus 613 d~s~C~~C~~~F~f~-rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l 672 (1030)
....|..|..+|+|. ...+-|..|...+|..|+.. ....+..+|.-|+..-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHH
Confidence 556899999999966 45788999999999999975 2357899999999874
No 43
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.69 E-value=4 Score=54.56 Aligned_cols=253 Identities=17% Similarity=0.181 Sum_probs=134.0
Q ss_pred cEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCCCCCcceeecee--------------eeccCCC--c---cEEEEE
Q 001683 315 NVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRK--------------LFDTLDG--V---RVSKVA 375 (1030)
Q Consensus 315 ~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~~~~~~~~~P~~--------------v~~~l~~--~---~Iv~Ia 375 (1030)
....|.....+-++.+.+|+||.--..... .....-...|.. |.+++.+ . -+++=.
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~-----~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ-----DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc-----CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 567788788889999999999976444221 111111122222 2222222 1 234446
Q ss_pred eCCCceEEEeeCCcEEEEecCCCcccCCCCCCCcCC-----CeEeeecCCCeEEEEEecCCeEEEEEeeecccccccccC
Q 001683 376 CGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQ-----PKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIG 450 (1030)
Q Consensus 376 cG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~~~~-----P~~V~~l~~~~I~~IacG~~Ht~aLte~~~~~~~~~~s~ 450 (1030)
.|..|+++|.++|.=|.=|||-.-.|=..+...... |..+-. .|..-.++|. +
T Consensus 565 ~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ld----------l~r~G~v~L~------------~ 622 (1774)
T PF11725_consen 565 QGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILD----------LGRAGLVGLQ------------D 622 (1774)
T ss_pred CCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhc----------cccccceeec------------c
Confidence 788899999988888888888665554433322211 112212 2333344442 5
Q ss_pred CeEEEEecCCCC----------Cc----------------------------CCCCCCceeee---------eEeeeccc
Q 001683 451 GKLFTWGDADKG----------RL----------------------------GHVDGERKLLP---------TCVTRLVD 483 (1030)
Q Consensus 451 G~Vy~WG~n~~G----------QL----------------------------G~g~~~~~~~P---------~~V~~l~~ 483 (1030)
|+|+.|-....+ || -+++......| ..+..+.+
T Consensus 623 G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~~ 702 (1774)
T PF11725_consen 623 GKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLED 702 (1774)
T ss_pred ceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCCc
Confidence 666666432111 01 11111111111 11223344
Q ss_pred CceEEEE-eccceeEEEeCCCeEEEEeCCCCCCCCCCCCCCcceeEEecccccccEEEEEeCCCc-eeEEecCCeEEEEe
Q 001683 484 FDFVQAS-CGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYH-VAVLTSGGSVYTWG 561 (1030)
Q Consensus 484 ~~Iv~Ia-cG~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~V~~~l~~~~V~~Ia~G~~H-s~aLTsdG~Vy~WG 561 (1030)
..|..++ .+.++.++|++.|++-..= ....|..+...-....|+.|++-..| -+|+|.+|++|.-=
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~------------k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQ------------KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCcccccc------------CCCCCccCCCCCCCcchhheeeccccceeEecCCCceeecC
Confidence 4455444 3667777777777665432 11124333332224569999998775 67899999999843
Q ss_pred CCCCCCCCCCCCCCcceeeeeccccCCeeEEeeecCCccceeeecc
Q 001683 562 KNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAICLHK 607 (1030)
Q Consensus 562 ~N~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~IacG~~hT~aI~~~k 607 (1030)
.-.+-..-.++ ......++|....+..|..+....+|.+.+....
T Consensus 771 k~~WQ~~~~~~-~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 771 KEAWQGNAEGD-QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred HHHhhCcccCC-ccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 32221111111 1123455555556678888888888888887543
No 44
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.55 E-value=1.3 Score=42.41 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=42.7
Q ss_pred eEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 16 QLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 16 ~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
.|.|+....|..|.... ....||.|+. ..|..-|+|.+++|.+.|+..|..
T Consensus 52 ~IdL~~~~~V~~~~~~~---------~~~~~f~I~t--p~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 52 TIDMNQCTDVVDAEART---------GQKFSICILT--PDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred EEEccceEEEeeccccc---------CCccEEEEEC--CCceEEEEeCCHHHHHHHHHHHHh
Confidence 48999999999887431 1267999999 679999999999999999998864
No 45
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=89.29 E-value=1.5 Score=41.72 Aligned_cols=70 Identities=13% Similarity=0.330 Sum_probs=47.5
Q ss_pred cceEEEeeCCccc----eEeccccc---eeeccccccccccCCCCCCC-CCeEEEEEcCCCccceeecCCHHHHHHHHHH
Q 001683 3 EKFLIWYSGQKEK----QLRLNSVT---KIIMGQRTVNFQCQPQPDRK-QQSFSIIYANGERSLDLICKDKVQAESWFLG 74 (1030)
Q Consensus 3 ~~~l~w~~~~k~~----~~~l~~v~---~v~~G~~t~~f~~~~~~~~~-~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~G 74 (1030)
...|.+|..+.+. .|.|.++. +|..+...+. ... ..||.|+. ..|+.=|.|.+++|++.||.-
T Consensus 25 ~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~-------~~~~~~~F~i~t--~~Rty~l~a~s~~e~~~Wi~a 95 (103)
T cd01251 25 DRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT-------QGNHWYGVTLVT--PERKFLFACETEQDRREWIAA 95 (103)
T ss_pred CCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc-------cccccceEEEEe--CCeEEEEECCCHHHHHHHHHH
Confidence 3467777664331 36776654 3544322110 111 23999888 589999999999999999999
Q ss_pred HHHHHhc
Q 001683 75 LRAAISS 81 (1030)
Q Consensus 75 L~~li~~ 81 (1030)
|+..|..
T Consensus 96 i~~v~~~ 102 (103)
T cd01251 96 FQNVLSR 102 (103)
T ss_pred HHHHhcC
Confidence 9998864
No 46
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=89.08 E-value=0.25 Score=64.55 Aligned_cols=47 Identities=30% Similarity=0.811 Sum_probs=37.5
Q ss_pred CCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhh
Q 001683 614 QSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQ 673 (1030)
Q Consensus 614 ~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~ 673 (1030)
...|..|+ +-..++|||+-||.+||..|.. ...+..|||..|+....
T Consensus 5 ~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~----------~~~~~i~~~~~~~~~~~ 51 (1598)
T KOG0230|consen 5 SNVCYDCD---TSVNRRHHCRVCGRVFCSKCQD----------SPETSIRVCNECRGQWE 51 (1598)
T ss_pred ccchhccc---cccccCCCCcccCceeccccCC----------CCccceeehhhhhhhcc
Confidence 35677787 4557899999999999999993 22348999999999874
No 47
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.75 E-value=2 Score=40.08 Aligned_cols=61 Identities=16% Similarity=0.362 Sum_probs=43.1
Q ss_pred ceEEEeeCCcc----ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHH
Q 001683 4 KFLIWYSGQKE----KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAA 78 (1030)
Q Consensus 4 ~~l~w~~~~k~----~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~l 78 (1030)
..|.+|....+ -.|.|..+..+.. +.....+|.|+- ..|..-|.|.|++|.+.||..|+..
T Consensus 29 ~~L~Yyk~~~d~~p~G~I~L~~~~~~~~------------~~~~~~~F~i~t--~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 29 CYLYYYKDSQDAKPLGRVDLSGAAFTYD------------PREEKGRFEIHS--NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cEEEEECCCCcccccceEECCccEEEcC------------CCCCCCEEEEEc--CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 45777766543 2377777654321 111257999987 4688999999999999999998864
No 48
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=87.34 E-value=17 Score=40.20 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=39.5
Q ss_pred CCeEEEEeeCCCEEEecCCCCCCCccC----CCCCcceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEe
Q 001683 323 EFQTCALTKSGEIYTWGHNNHGADLVG----ERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYG 394 (1030)
Q Consensus 323 ~~hslaLT~dG~VY~WG~n~~~~g~LG----~~~~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG 394 (1030)
..|++++- ++++|.||..+...+.+. .......|...+|.+.+.+ +-..|++++-.+ ++|.||
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~gn-~MyiFG 146 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVWGN-QMYIFG 146 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEECc-EEEEec
Confidence 46776555 778999997755444433 2333445655566655554 235788777644 789998
No 49
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.67 E-value=2.1 Score=45.21 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
+|+..+++.+++.|+++.+..+.++..++.+++++ ...++|+..+.+.-+-++.|..+++.+.+.|
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888888888888888888888 5577777666655555666655555554444
No 50
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=86.65 E-value=2.6 Score=40.23 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=46.0
Q ss_pred eEEEeeCCc----cceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHH
Q 001683 5 FLIWYSGQK----EKQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAA 78 (1030)
Q Consensus 5 ~l~w~~~~k----~~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~l 78 (1030)
.|.+|...+ ...|.|+.+..|..|...+ ....+-...|.|.. ..|++=|+|.+++|.+.||..|+.|
T Consensus 37 ~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t--~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 37 ALEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-----AGNCIFGYGFDIET--IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred eEEEECCCCCCccceEEECCccEEEccccccc-----ccCcccceEEEEEe--CCccEEEEECCHHHHHHHHHHHHhh
Confidence 366675532 2358999988876553221 11112235688876 6789999999999999999999865
No 51
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=85.93 E-value=0.12 Score=61.21 Aligned_cols=67 Identities=22% Similarity=0.411 Sum_probs=54.8
Q ss_pred ceEeccccceeeccccccccccCCC--C--CCCCCeEEEEEcCC-CccceeecCCHHHHHHHHHHHHHHHhc
Q 001683 15 KQLRLNSVTKIIMGQRTVNFQCQPQ--P--DRKQQSFSIIYANG-ERSLDLICKDKVQAESWFLGLRAAISS 81 (1030)
Q Consensus 15 ~~~~l~~v~~v~~G~~t~~f~~~~~--~--~~~~~~Fsii~~~~-~~sLdLv~~~~~ea~~W~~GL~~li~~ 81 (1030)
+++.|.||..|..|+.-+-.+.-.. - .--+..|||.|... ...|+.||.|+-|.-.|..||.+|+-.
T Consensus 590 ~klpvaDIkav~tgkdcphmkek~a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~ 661 (713)
T KOG2999|consen 590 EKLPVADIKAVVTGKDCPHMKEKSALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGS 661 (713)
T ss_pred hhcCHHHHHHHhcCCCCcchhhcchhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCC
Confidence 5699999999999999875544321 1 22379999999744 579999999999999999999999964
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.65 E-value=3.7 Score=49.72 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
..+|.+.|..|.+|+.+|+.++..|+..++....+..+++++.++.
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999998888888777777776665544
No 53
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=85.45 E-value=3.3 Score=36.73 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=40.6
Q ss_pred eEeccccceeeccccccccccCCCCCCCCCeEEEEEcC-CCccceeecCCHHHHHHHHHHHHH
Q 001683 16 QLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYAN-GERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 16 ~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~-~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
.+.+..+. |..+.... ....+|.|+... +.+.+-|-|.+.+|++.|+.-|+.
T Consensus 46 ~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 46 SIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred EEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 47777777 66665542 235799999965 478999999999999999998863
No 54
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.86 E-value=0.14 Score=64.34 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=90.3
Q ss_pred CCCEEEEEecCCEEEEEEeCCeEEEEecCCCCcCCC--CCCccccccEEe-cccCCCcEEEEEeCCCeEEEEeeCCCEEE
Q 001683 261 MLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGH--KVNMDVSCPKLV-ECLSGINVQSVSCGEFQTCALTKSGEIYT 337 (1030)
Q Consensus 261 ~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N~~GQLG~--g~~~~~~~P~~V-~~l~~~~I~~Va~G~~hslaLT~dG~VY~ 337 (1030)
..+++.|.+-.+..++|..+|++|.|-+...--|-. ....+...|..- -.+.+.+|+.+++..--.-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 456788888788889999999999998765433332 223334444332 24567899999999999999999999999
Q ss_pred ecCCCCCCCccCCCCCcceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEecCCC
Q 001683 338 WGHNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTF 398 (1030)
Q Consensus 338 WG~n~~~~g~LG~~~~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~ 398 (1030)
|=+- .+-|......+..-+++ ...+..+++..|...|+++..+|.-+|.||---+
T Consensus 453 WlDE----cgagV~fkLa~ea~Tki--eed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 453 WLDE----CGAGVAFKLAHEAQTKI--EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred HHhh----hhhhhhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 9654 11121111111111222 2456778888899999999999999999994433
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.20 E-value=6.9 Score=39.57 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKE 860 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake 860 (1030)
.+.+....+-|+++..++-.+|.+|.++..+.+.+|.++..++++|-..+. |++|....-|
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-e~~~~~~~~E 76 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-ESEKRKSNAE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHhHH
Confidence 456677777888999999999999999999999999999999999877664 4566555433
No 56
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.93 E-value=3.9 Score=36.89 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 44 QQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 44 ~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
..+|+|...+ .+++-|.|.+++|++.||..|+.
T Consensus 58 ~~~F~i~~~~-~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 58 DKCFTIDTGG-DKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CcEEEEEcCC-CCEEEEECCCHHHHHHHHHHHHh
Confidence 5799998743 38999999999999999999874
No 57
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.49 E-value=4.2 Score=39.85 Aligned_cols=70 Identities=14% Similarity=0.300 Sum_probs=46.4
Q ss_pred cceEEEeeCCcc----ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCC-------------------Cccce
Q 001683 3 EKFLIWYSGQKE----KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANG-------------------ERSLD 59 (1030)
Q Consensus 3 ~~~l~w~~~~k~----~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~-------------------~~sLd 59 (1030)
+..|.+|...++ ..|.|+++. |..... .....||.|+..++ .+..-
T Consensus 25 ~~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~----------~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 93 (125)
T cd01252 25 DNCLYYFEYTTDKEPRGIIPLENVS-IREVED----------PSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYR 93 (125)
T ss_pred CCEEEEEcCCCCCCceEEEECCCcE-EEEccc----------CCCCeeEEEECCccccccccccccccccccccCceEEE
Confidence 456778866432 347888654 322211 12345787766443 35666
Q ss_pred eecCCHHHHHHHHHHHHHHHhcCC
Q 001683 60 LICKDKVQAESWFLGLRAAISSCR 83 (1030)
Q Consensus 60 Lv~~~~~ea~~W~~GL~~li~~~~ 83 (1030)
|.|.+.+|++.||..|+..+..+.
T Consensus 94 ~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 94 ISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCc
Confidence 899999999999999999998654
No 58
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=83.40 E-value=7.7 Score=41.71 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 810 NEEVQRLRDQAR-------NLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 810 ~~ev~~l~~q~~-------~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
|+|+++|+.|.+ .++++-+.++.++++...+++||+.--..=+ -++.+++++.|...|+++
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~--~k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKT--EKVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 555655555543 4555555666666666666666554333322 245566666666666654
No 59
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=82.71 E-value=46 Score=40.48 Aligned_cols=107 Identities=18% Similarity=0.301 Sum_probs=64.4
Q ss_pred ecCCEEEEEEeCCeEEEEecCCCCcCCCCCCccccccEEecccC-CCcEEEEEeCC-CeEEEEeeCCCEEE-ecCCCCCC
Q 001683 269 LGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLS-GINVQSVSCGE-FQTCALTKSGEIYT-WGHNNHGA 345 (1030)
Q Consensus 269 ~G~~hs~~Lt~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~l~-~~~I~~Va~G~-~hslaLT~dG~VY~-WG~n~~~~ 345 (1030)
.|.....+|+.+|++|.= +|...+...-...+... ...+.+|++|. .-..+|+.+|.||. .|-. .+
T Consensus 190 ~g~~~awAI~s~Gd~y~R---------tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVs--Rq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR---------TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVS--RQ 258 (705)
T ss_pred CCceEEEEEecCCcEEEe---------ccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEeccc--cc
Confidence 455666677888887741 12222111111122111 12588999998 67789999999764 4544 23
Q ss_pred CccCCCCCcceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEE
Q 001683 346 DLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTY 393 (1030)
Q Consensus 346 g~LG~~~~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~w 393 (1030)
.+.|..-. ....|... ..++.|+.|....-+||.+|.||.-
T Consensus 259 Np~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEEE
Confidence 33443222 22233322 2389999999889999999999864
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.66 E-value=11 Score=38.22 Aligned_cols=77 Identities=27% Similarity=0.393 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQ-----------------ARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEI 861 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q-----------------~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ 861 (1030)
+.+|.+-|..|-.||.+|+.+ +++|.++.++.+.+|..+.+++.+|..-.++=..|.--.-.=
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 556667777777666666654 356777778888888888888887776555433333333334
Q ss_pred HHHHHHHHHHhhhh
Q 001683 862 IKALAVRLHTLSEK 875 (1030)
Q Consensus 862 ik~l~~qlk~~~e~ 875 (1030)
+++|-.+..++-+|
T Consensus 117 v~~le~~~~~~E~k 130 (143)
T PF12718_consen 117 VKALEQERDQWEEK 130 (143)
T ss_pred HHHHHhhHHHHHHH
Confidence 55555544444433
No 61
>PRK15396 murein lipoprotein; Provisional
Probab=82.27 E-value=3.7 Score=37.11 Aligned_cols=42 Identities=12% Similarity=0.349 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCK 856 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~k 856 (1030)
.+|.+|.+||..|..|-++...+++..+..++. |.|||++..
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~----a~~eA~raN 66 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA----AKDDAARAN 66 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 378899999999998888888888877766665 667877644
No 62
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.92 E-value=9.6 Score=37.42 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
+.|...=.-+--|+..||.|+..|.++-+....||-++.++.++ .++++.-+..|..+|++|-.|.
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~-----------~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE-----------LRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555555555555555555555444444444 3444455666777777666553
No 63
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.73 E-value=2.3 Score=34.38 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001683 798 VEKDLSESNKMLNEEVQRLRDQARNLEKQCQ 828 (1030)
Q Consensus 798 ~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~ 828 (1030)
.-|.|+.-++.|.+|+.+|++||..|+.+.+
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3688999999999999999999999988764
No 64
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=81.62 E-value=0.18 Score=63.38 Aligned_cols=129 Identities=17% Similarity=0.275 Sum_probs=84.7
Q ss_pred CCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCC--CCCcceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcE
Q 001683 313 GINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGE--RRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQL 390 (1030)
Q Consensus 313 ~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~--~~~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~V 390 (1030)
..+++.|.+-.+..+||..+|++|.|-+... -.+.. ....+...|..-+..+.+.+|+.+++..-..-++|++|+|
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdES--Eglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDES--EGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccc--cCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 3467778887888899999999999988732 22222 1122333454444457889999999999999999999999
Q ss_pred EEEecCCCcccCCCCCCCcC--CCeEeeecCCCeEEEEEecCCeEEEEEeeecccccccccCCeEEEEecC
Q 001683 391 FTYGDGTFGVLGHGNLQNVS--QPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDA 459 (1030)
Q Consensus 391 y~wG~N~~GQLG~g~~~~~~--~P~~V~~l~~~~I~~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n 459 (1030)
.+|=+- +|.|-..... .-+.+ ...+..+++.-|...|+++..+ +..+|=||--
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~-----------dniihWcGiV 505 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLE-----------DNIIHWCGIV 505 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhh-----------hceeeEEeee
Confidence 999432 2222111111 11111 2344556666777778877764 7889999953
No 65
>PHA01750 hypothetical protein
Probab=80.80 E-value=3.6 Score=35.43 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 806 NKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
.|+.++|+..|+-|++.++.+-+..++++++.+||++
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 5678999999999999999999999999999998875
No 66
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=80.79 E-value=12 Score=32.76 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 813 VQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 813 v~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
++.|-.+|+.|=+.|+....|=..+..++.....==+-=.+|-.+|..=|+++..+||.|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344445555555555555544444444433322222222234445555588888888876
No 67
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=80.65 E-value=55 Score=39.83 Aligned_cols=70 Identities=26% Similarity=0.371 Sum_probs=52.1
Q ss_pred CEEEEEecC-CEEEEEEeCCeEEE-EecCCCCcCCCCCCccccccEEecccCCCcEEEEEeCCCeEEEEeeCCCEEEe
Q 001683 263 DVQNISLGA-KHAALVTKEGEVFC-WGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTW 338 (1030)
Q Consensus 263 ~I~~Ia~G~-~hs~~Lt~dG~Vys-WG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~VY~W 338 (1030)
++.+|++|. .-..+|+.+|.||. -|-....+.|..=. ++..|.... .++.|+.|..-.-+||.+|.||.=
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 688999999 66778999999775 67666555554322 455554332 389999998888999999999853
No 68
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.59 E-value=45 Score=37.29 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=78.5
Q ss_pred ceEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccccCCCEEEEEec---CCEEEEEEeCCeEEEEe
Q 001683 211 LIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLG---AKHAALVTKEGEVFCWG 287 (1030)
Q Consensus 211 ~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G---~~hs~~Lt~dG~VysWG 287 (1030)
+.++...+|.||.=++.. |.+|+-+... -.+..+..| .-|.+++..||..|.+-
T Consensus 65 ~dvapapdG~VWft~qg~--gaiGhLdP~t---------------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT--GAIGHLDPAT---------------------GEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cccccCCCCceEEecCcc--ccceecCCCC---------------------CceEEEecCCCCCCceEEECCCCCeeEec
Confidence 667889999999988875 6777655321 123334333 35778888888888875
Q ss_pred cC-CCCcCCCCCCccccccEEecccCCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCCCCCcceeeceeeeccC
Q 001683 288 EG-KDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTL 366 (1030)
Q Consensus 288 ~N-~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~~~~~~~~~P~~v~~~l 366 (1030)
.. .-++++...-....-|.. .+.+-++-.+.+++.+|.||.-|.+.+ .|.|..........|..
T Consensus 122 ~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~-yGrLdPa~~~i~vfpaP----- 186 (353)
T COG4257 122 TGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGA-YGRLDPARNVISVFPAP----- 186 (353)
T ss_pred CcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeecccc-ceecCcccCceeeeccC-----
Confidence 43 222332211111111111 234456677889999999999998732 23332222221112211
Q ss_pred CCccEEEEEeCCCceEEEeeCCcEEEE
Q 001683 367 DGVRVSKVACGEWHTAIVSTSGQLFTY 393 (1030)
Q Consensus 367 ~~~~Iv~IacG~~Hs~aLT~dG~Vy~w 393 (1030)
. -+.-.-+++|-+|.||.-
T Consensus 187 q--------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 Q--------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred C--------CCCCcceEECCCCcEEEE
Confidence 1 123456788999999976
No 69
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=80.54 E-value=33 Score=37.97 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=12.7
Q ss_pred CCEEEEEEeCCeEEEEec
Q 001683 271 AKHAALVTKEGEVFCWGE 288 (1030)
Q Consensus 271 ~~hs~~Lt~dG~VysWG~ 288 (1030)
..|+++. -++++|.||-
T Consensus 80 YGHtvV~-y~d~~yvWGG 96 (392)
T KOG4693|consen 80 YGHTVVE-YQDKAYVWGG 96 (392)
T ss_pred cCceEEE-EcceEEEEcC
Confidence 5677655 4788999984
No 70
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=80.06 E-value=3.9 Score=54.68 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=45.1
Q ss_pred cCceEEEEeccceeE-EEeCCCeEEEEeCCCCCCCCCCCCCCcceeEEecccccccEEEEEeCCCceeEEecCC
Q 001683 483 DFDFVQASCGRMLTV-GLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTSGG 555 (1030)
Q Consensus 483 ~~~Iv~IacG~~htl-aLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~V~~~l~~~~V~~Ia~G~~Hs~aLTsdG 555 (1030)
...|+.|++-..|.+ |||.+|++|..=.-..-..-.+........+|..+ .+..|..+....+|.+.+.-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 347999999888664 88999999975432222111121111223344433 5677899999988888776543
No 71
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.01 E-value=6.9 Score=44.21 Aligned_cols=54 Identities=30% Similarity=0.448 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcc
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKIS 877 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp 877 (1030)
.+||.+|.+||-.|.++|.+...|-+++.+.+. ++||.=..|+++|++|.+|--
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~--------------~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ--------------ASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888777777765 467777788888888888754
No 72
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.82 E-value=6.8 Score=38.34 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=46.1
Q ss_pred cceEEEeeCCcc-c---eEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 3 EKFLIWYSGQKE-K---QLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 3 ~~~l~w~~~~k~-~---~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
.+.|+.+....+ + -|-++.--.|..|.....-..-..+.....-+.|...+..|+|=|.|.|+.|++.|+..|+.
T Consensus 42 ~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 42 ESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred CCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 355666655433 1 25666666777666653211111111223334444466999999999999999999999874
No 73
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.87 E-value=5.3 Score=34.83 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=26.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~ 835 (1030)
+++||..|..|.||++.++.+.+.|+++-++...|-.
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888887777777666555433
No 74
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=78.54 E-value=1.3 Score=58.31 Aligned_cols=34 Identities=38% Similarity=0.978 Sum_probs=31.4
Q ss_pred cccCCCCCCccccccccccccccccccCCceeeccC
Q 001683 609 ISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSAC 644 (1030)
Q Consensus 609 v~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~C 644 (1030)
+++...-.|..|.+.|.-.|++||| ||++||.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 5667778899999999999999999 999999999
No 75
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.06 E-value=13 Score=35.43 Aligned_cols=69 Identities=25% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHH---HHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSL---AREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~---a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
.+.+|+..|-.|.+.|..+.+....+--+..+++.++..- +.+--++.+.-|+-|+.|..+++++.++|
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555444432 22233334445555666666555554443
No 76
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.79 E-value=16 Score=40.93 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
...++...+.|.+++.+++.+++.++++.+.+..+|+...+.+.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777777777766665555
No 77
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=77.42 E-value=7.5 Score=35.97 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=41.9
Q ss_pred ceEEEeeCCcc----ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 4 KFLIWYSGQKE----KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 4 ~~l~w~~~~k~----~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
..|.+|....+ ..|.|.... |..-. +.....||.|+.. ..+++=|.|.|++|++.||.-|+.
T Consensus 30 ~~L~yyk~~~~~~~~~~I~L~~~~-v~~~~----------~~~k~~~F~I~~~-~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 30 TTLYWYRSKQDEKAEGLIFLSGFT-IESAK----------EVKKKYAFKVCHP-VYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred CEEEEECCCCCCccceEEEccCCE-EEEch----------hcCCceEEEECCC-CCcEEEEEeCCHHHHHHHHHHHHh
Confidence 56777766532 346777652 32211 1223568999863 348899999999999999999874
No 78
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.89 E-value=25 Score=35.67 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
..|+.+|...++.|+.+.+..+.++...+.+...+-.-.+.+..+.|..||-+.-|..
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444433
No 79
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=76.81 E-value=6.5 Score=37.01 Aligned_cols=64 Identities=27% Similarity=0.570 Sum_probs=42.9
Q ss_pred cceEEEeeCC--ccce--EeccccceeeccccccccccCCCCCCCCCeEEEEEcC------CCccceeecCCHHHHHHHH
Q 001683 3 EKFLIWYSGQ--KEKQ--LRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYAN------GERSLDLICKDKVQAESWF 72 (1030)
Q Consensus 3 ~~~l~w~~~~--k~~~--~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~------~~~sLdLv~~~~~ea~~W~ 72 (1030)
..+|-|+.-. ||++ |+|+.+ +||..... |- ..-.||.|.+-+ ..++|+|.|.+.||.+.|-
T Consensus 28 ~~~L~wykd~eeKE~kyilpLdnL-k~Rdve~g--f~------sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswk 98 (110)
T cd01256 28 SESLSWYKDDEEKEKKYMLPLDGL-KLRDIEGG--FM------SRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWK 98 (110)
T ss_pred cceeeeecccccccccceeecccc-EEEeeccc--cc------CCCcEEEEEcCcccccccchheeeecCCCHHHHHHHH
Confidence 3589999764 4544 688665 34444422 21 112788887543 3689999999999999997
Q ss_pred HHH
Q 001683 73 LGL 75 (1030)
Q Consensus 73 ~GL 75 (1030)
..+
T Consensus 99 asf 101 (110)
T cd01256 99 ASF 101 (110)
T ss_pred HHH
Confidence 653
No 80
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.71 E-value=15 Score=35.00 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcc
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQK---IEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKIS 877 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~---~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp 877 (1030)
|-++..+|+.+++.|+.+--....+|.+..++ +++..+-+++=..+-++..+-++.+..+|.++.-.||
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46777888888888888888888888877774 6777777777777888888899999999999999988
No 81
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.49 E-value=15 Score=38.92 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
|.+++..|..+.+.|+.+......+++..+++.+|.
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 82
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.48 E-value=9.8 Score=34.46 Aligned_cols=32 Identities=9% Similarity=0.438 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCccceeecCCHHHHHHHHHHHH
Q 001683 43 KQQSFSIIYANGERSLDLICKDKVQAESWFLGLR 76 (1030)
Q Consensus 43 ~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~ 76 (1030)
...||.|+..+ +++=|.|.+.+|++.||..|+
T Consensus 61 ~~~~f~i~~~~--~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 61 RRFCFEVISPT--KTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred CceEEEEEcCC--cEEEEECCCHHHHHHHHHHHh
Confidence 35799999855 899999999999999999886
No 83
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.06 E-value=21 Score=31.85 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 801 DLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
.+=.+..+|..||.+|+.+...|.+.-+....|.++++ .-+.+.++=|++|-.+|+++
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~--------------~e~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLK--------------QERNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhcC
Confidence 34455667777777777777777766666655555555 23566777788888777653
No 84
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.91 E-value=69 Score=42.66 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=108.5
Q ss_pred EEEEeCCeEEEEecCCCCcCCCCCCc--cccccEEecccCCCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCCCC
Q 001683 275 ALVTKEGEVFCWGEGKDGRLGHKVNM--DVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERR 352 (1030)
Q Consensus 275 ~~Lt~dG~VysWG~N~~GQLG~g~~~--~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~~~ 352 (1030)
+-+|-|.++|.|-.++.+++-.-+.. .+..-.+|+.-.+.-+-.| .|.++|..-=+|+..|-... ....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~-~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFD-EFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEec-cccCcccc
Confidence 57899999999999987766422111 1111122222222222222 58888888888888875421 11111111
Q ss_pred CcceeeceeeeccCCCccEEEEEeCCCceEEEe-eCCcEEEE----ecCCCcccCC-----CCCCCcCCCeEee--ecCC
Q 001683 353 SRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVS-TSGQLFTY----GDGTFGVLGH-----GNLQNVSQPKEVE--SLRG 420 (1030)
Q Consensus 353 ~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT-~dG~Vy~w----G~N~~GQLG~-----g~~~~~~~P~~V~--~l~~ 420 (1030)
.... +.-..++..|..|.+-.+-=++++ .||.||-+ +++-|+.--+ ........|..+. ....
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 222245666777765554444444 56665543 2333333111 0111223444222 1224
Q ss_pred CeEEEEEecCCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCCCCCc---------eeeeeEeeecccCceEEEE-
Q 001683 421 LKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGER---------KLLPTCVTRLVDFDFVQAS- 490 (1030)
Q Consensus 421 ~~I~~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g~~~~---------~~~P~~V~~l~~~~Iv~Ia- 490 (1030)
..|.+|+.+....+..+- +..|.|=+|--+..|+-+.-.... ...-..+....-..|++|.
T Consensus 243 dpI~qi~ID~SR~IlY~l---------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~ 313 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL---------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISP 313 (1311)
T ss_pred CcceeeEeccccceeeee---------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecc
Confidence 579999999888877653 346777777555555443211000 0000011111112355554
Q ss_pred -----eccceeEEEeCCC-eEEEEeC
Q 001683 491 -----CGRMLTVGLTGLG-KVYTMGS 510 (1030)
Q Consensus 491 -----cG~~htlaLt~dG-~Vy~wG~ 510 (1030)
.-+-|.+|+|..| ++|.-|+
T Consensus 314 l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 314 LSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cCcccccceeEEEEecCCeEEEEecc
Confidence 3467899999999 6777664
No 85
>PRK11637 AmiB activator; Provisional
Probab=74.83 E-value=19 Score=42.97 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+.+|+..++.+...+.++.+..+.+|..+.+++.+
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~ 93 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE 93 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 86
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=74.61 E-value=9.5 Score=36.24 Aligned_cols=61 Identities=15% Similarity=0.356 Sum_probs=45.0
Q ss_pred eEEEeeCCcc---------ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHH
Q 001683 5 FLIWYSGQKE---------KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGL 75 (1030)
Q Consensus 5 ~l~w~~~~k~---------~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL 75 (1030)
.|-||.+.|+ ..|.|.++..|.. .+ ......+|.|+. ..++.=|+|.+++|.+.|+.-|
T Consensus 31 ~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~---~~-------d~k~~~~f~i~t--~dr~f~l~aese~E~~~Wi~~i 98 (101)
T cd01257 31 RLEYYENEKKFLQKGSAPKRVIPLESCFNINK---RA-------DAKHRHLIALYT--RDEYFAVAAENEAEQDSWYQAL 98 (101)
T ss_pred eEEEECChhhccccCCCceEEEEccceEEEee---cc-------ccccCeEEEEEe--CCceEEEEeCCHHHHHHHHHHH
Confidence 6888876431 2489999988852 11 112247999988 5589999999999999999877
Q ss_pred HH
Q 001683 76 RA 77 (1030)
Q Consensus 76 ~~ 77 (1030)
.-
T Consensus 99 ~~ 100 (101)
T cd01257 99 LE 100 (101)
T ss_pred hh
Confidence 53
No 87
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=74.32 E-value=11 Score=35.54 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=42.1
Q ss_pred cceEEEeeCCccc----eEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 3 EKFLIWYSGQKEK----QLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 3 ~~~l~w~~~~k~~----~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
+++|..++..++. -+.|..+ .|++-+.+- .....||.|+.-.+ .+--.+|.+.+|++.||..|++
T Consensus 29 ~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~-~~~y~~~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 29 RSHESLLSSPKKTKPIGLIDLSDA-YLYPVHDSL--------FGRPNCFQIVERAL-PTVYYSCRSSEERDKWIESLQA 97 (98)
T ss_pred CceEEEEcCCCCCCccceeecccc-EEEEccccc--------cCCCeEEEEecCCC-CeEEEEeCCHHHHHHHHHHHhc
Confidence 4566655554321 2567777 777766541 11237999987433 2555777777999999999985
No 88
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.31 E-value=7.3 Score=34.63 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLARE 850 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~e 850 (1030)
-+++|+..|+.|++.|+++-+.++.+|+++++.-+.--.+|++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4778888888888888888888888888775544444444443
No 89
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=73.67 E-value=37 Score=33.10 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
.....+.+.++=..|+..-..|+.....-+.=|+....+...|...|.+|......-..-|+-|+++|..|...
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~ 96 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666666777777888888999999999999988888899999988877544
No 90
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=73.41 E-value=17 Score=34.61 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKI-EEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
++..-+++...+++..+..+.||+.+...| +||-.|+++|---+-+++.=...|..||++...+|
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l 67 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALL 67 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677778888888999999888877 99999998876444444444556666666654443
No 91
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=73.13 E-value=22 Score=41.53 Aligned_cols=70 Identities=27% Similarity=0.296 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHhH---HHHHHHHHHHHHHhH---------
Q 001683 806 NKMLNEEVQRLRDQARNLEKQCQIG-----------------NQKVQECQQKI---EEAWSLAREEAEKCK--------- 856 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~~~~~-----------------~~~~~~~~~~~---~ea~~~a~ee~~k~k--------- 856 (1030)
|+.+.+|+.+||.+++.-+.+.|.. |.|+|-+++|- +.-+..|+|+++|.|
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gt 383 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGT 383 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchhee
Confidence 4455579999999888777766654 45655444443 444778888888866
Q ss_pred -----------------hHHHHHHHHHHHHHHhhhh
Q 001683 857 -----------------AAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 857 -----------------aake~ik~l~~qlk~~~e~ 875 (1030)
+||--+..+|..|+|--+|
T Consensus 384 l~vahgsslDdVD~kIleak~al~evtt~lrErl~R 419 (575)
T KOG4403|consen 384 LHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHR 419 (575)
T ss_pred eeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776655
No 92
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=72.82 E-value=15 Score=31.05 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhH
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCK 856 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~k 856 (1030)
.|.+|-++|..|..|-.++..++.-++..+ .-|.+||++.+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v----~~ak~EAaRAN 44 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV----QAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 344555555555555555555555544333 35667777644
No 93
>PRK11637 AmiB activator; Provisional
Probab=72.81 E-value=22 Score=42.36 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQK 840 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~ 840 (1030)
++++++.++..++++....+.+|..+.++
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~q 83 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEA 83 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.08 E-value=28 Score=37.05 Aligned_cols=65 Identities=28% Similarity=0.377 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHH----HHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWS----LAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~----~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
|..+|..++..++.+.+..+.+|+.+.++++-+.. ...-|-.|.++|.+-++.|..+++.+--+|
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888888888885543 445677888899998888888888776655
No 95
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.98 E-value=30 Score=39.63 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH-------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhh
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE-------EAWSLAREEAEKCKAAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-------ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e 874 (1030)
+.+--+-|.+|...|..+++.|+++++.+++||..++++++ +.|..-.+=--..-...+...+|.+|+.-+.+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555555666666666666665555555444333 22222221111112333444566666665555
Q ss_pred hc
Q 001683 875 KI 876 (1030)
Q Consensus 875 ~l 876 (1030)
+|
T Consensus 128 ~L 129 (314)
T PF04111_consen 128 QL 129 (314)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 96
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=71.77 E-value=7.9 Score=36.56 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcC-CCccceeecCCHHHHHHHHHHHHHHH
Q 001683 42 RKQQSFSIIYAN-GERSLDLICKDKVQAESWFLGLRAAI 79 (1030)
Q Consensus 42 ~~~~~Fsii~~~-~~~sLdLv~~~~~ea~~W~~GL~~li 79 (1030)
.+.++|.|+-.+ .++++.|-|+++|+=+.|+.-|+.+|
T Consensus 57 ~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 57 GEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 357999999874 44699999999999999999999886
No 97
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.35 E-value=33 Score=37.88 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=20.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
++.+..-..-|.+|+.+|..|++.|+.+.++++..+...++++.
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~ 87 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELA 87 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555554444444444433333
No 98
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.69 E-value=21 Score=42.67 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH-HhHhHH-------HHHHHHHHHHHHhhh
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAE-KCKAAK-------EIIKALAVRLHTLSE 874 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~-k~kaak-------e~ik~l~~qlk~~~e 874 (1030)
..|+.+|.+|-+.|+++-+.+.+..+...++++.|+.-++.|.. .....| ..|..|+.||+.+..
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444444444445444444444444455567777766554444 222333 344445555554443
No 99
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.56 E-value=37 Score=34.38 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
.|+.++.+|+++++.|+...+....++..+++
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333333333
No 100
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.25 E-value=10 Score=39.29 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
|..|+.+|++|+..|++++...+.||..+.+.+-
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t 110 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPT 110 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5677889999999999999888888888777663
No 101
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.93 E-value=9.8 Score=43.18 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001683 803 SESNKMLNEEVQRLRDQARNLEKQ 826 (1030)
Q Consensus 803 ~~~~~~l~~ev~~l~~q~~~~~~~ 826 (1030)
.|....+.+||.+|++..++|++.
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt 240 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRT 240 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555443
No 102
>PRK14161 heat shock protein GrpE; Provisional
Probab=69.46 E-value=24 Score=37.01 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=44.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 798 VEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 798 ~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
+.+-+.+.-+.+.+|+..|++|++.|+.+......+++.++|+.+.-..-+.+ .+.-+.+++++-.+.+
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~-~a~~~~~~~LLpv~Dn 81 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKD-YAIATFAKELLNVSDN 81 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 34555666666777888888888888888777777877777766655544443 2234555555554443
No 103
>PLN02153 epithiospecifier protein
Probab=69.39 E-value=2.1e+02 Score=32.70 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=11.6
Q ss_pred ceeEEecCCeEEEEeC
Q 001683 547 HVAVLTSGGSVYTWGK 562 (1030)
Q Consensus 547 Hs~aLTsdG~Vy~WG~ 562 (1030)
+++.+..+++||.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 4555666779999984
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=69.24 E-value=1.3e+02 Score=35.77 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=17.5
Q ss_pred ceEEEEeccceeEEEeCCCeEEEEe
Q 001683 485 DFVQASCGRMLTVGLTGLGKVYTMG 509 (1030)
Q Consensus 485 ~Iv~IacG~~htlaLt~dG~Vy~wG 509 (1030)
+-+.+.-+..+.++=+++|.+|..-
T Consensus 221 ~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 221 KAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeEEEcccccEEEecCCcceEEeee
Confidence 3445556777778888888888753
No 105
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.66 E-value=18 Score=39.16 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=44.4
Q ss_pred CCcEEEEEeCCCeEEEEeeCCCEEEecCCCCCCCccCCCCCcceeeceeee-----ccCCCccEEEEEeCC-CceEEEee
Q 001683 313 GINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLF-----DTLDGVRVSKVACGE-WHTAIVST 386 (1030)
Q Consensus 313 ~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~LG~~~~~~~~~P~~v~-----~~l~~~~Iv~IacG~-~Hs~aLT~ 386 (1030)
+.++..+.|-..+.++||.+|.+|+|--... ..-.... ...| .+. .......|+.+.... ..-++..+
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~---k~~~~~~--Si~p-ll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKG---KAVLPPV--SIAP-LLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCC---eeccCCc--cHHH-HhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 4578889999999999999999999965521 1111110 0001 010 002334566555443 33455567
Q ss_pred CCcEEEEe
Q 001683 387 SGQLFTYG 394 (1030)
Q Consensus 387 dG~Vy~wG 394 (1030)
+|+.|+|-
T Consensus 86 ng~~y~y~ 93 (219)
T PF07569_consen 86 NGDSYSYS 93 (219)
T ss_pred CCCEEEec
Confidence 88888884
No 106
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.46 E-value=35 Score=39.06 Aligned_cols=77 Identities=30% Similarity=0.364 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHH-------HHHHHHHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQAR----NLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKE-------IIKALAVRLH 870 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~----~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake-------~ik~l~~qlk 870 (1030)
+..-|+.|.+.++.|-.|.+ .+.......+.|+|.+..|++.+...+..|.+|++.-++ =|..+..+-+
T Consensus 133 ~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~ 212 (309)
T PF09728_consen 133 LREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEK 212 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444444 333334456788899999999999999999999999999 6666666666
Q ss_pred Hhhhhcch
Q 001683 871 TLSEKISA 878 (1030)
Q Consensus 871 ~~~e~lp~ 878 (1030)
+|-+.|-.
T Consensus 213 ~Lr~QL~~ 220 (309)
T PF09728_consen 213 ELREQLNL 220 (309)
T ss_pred HHHHHHHH
Confidence 66666654
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.58 E-value=42 Score=36.88 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchhh
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAAK 880 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~~ 880 (1030)
.|+.|+..|...++.|+.+.+....++.+..+.+-|+-....+|.+ .+.+....+..|--++.++|||..
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~---~i~e~~~~~~~~~~~L~~~l~~el 176 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA---EIREEGQELSSKREELKEKLDPEL 176 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3444444444444444444444444444444444444444444333 344557777788889999999985
No 108
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.27 E-value=63 Score=28.65 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH---HHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW---SLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~---~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
|-+||.-||.....|.+|.+..+.++..+.+.=+.|. ..|-+|..|-|+- +.+|..+|++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E---~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEE---NEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 6789999999999999999999999888887766664 4455666666555 55555566553
No 109
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=66.81 E-value=9.4 Score=35.40 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHH
Q 001683 43 KQQSFSIIYANGERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 43 ~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
+.++|.|+-.+ .+.+-|.|.|++|.+.||..|+.
T Consensus 57 ~~~~F~i~~~~-~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 57 DENRFDISVNE-NVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CCCEEEEEeCC-CeEEEEEeCCHHHHHHHHHHHhh
Confidence 35789987643 49999999999999999999863
No 110
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.32 E-value=17 Score=41.09 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLARE 850 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~e 850 (1030)
.+.|..+-.-|.||-++|+.|++.|.++|...++|-|.+.+.+.||.+.-.+
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~ 180 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE 180 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666799999999999999999999999999999999999875443
No 111
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=65.84 E-value=8.9 Score=36.24 Aligned_cols=34 Identities=24% Similarity=0.595 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCccceeecCCHHHHHHHHHHHHHHHh
Q 001683 45 QSFSIIYANGERSLDLICKDKVQAESWFLGLRAAIS 80 (1030)
Q Consensus 45 ~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~li~ 80 (1030)
.||.|+ +..+++-|.|.+++|-+.|+..|+.-|.
T Consensus 65 ~~F~I~--~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 65 HCFTIF--GGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred eeEEEE--cCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 699998 4789999999999999999999998775
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=65.72 E-value=2e+02 Score=34.40 Aligned_cols=151 Identities=15% Similarity=0.225 Sum_probs=72.5
Q ss_pred ccccccCCcceEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccccCCCEEEEEecCCEEEEEE--e
Q 001683 202 LVTPTYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVT--K 279 (1030)
Q Consensus 202 vs~~s~Gs~~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~hs~~Lt--~ 279 (1030)
+.....|. -..+-+..|++|+|=-+. |.|=.-- ......|..+....+-..++| +
T Consensus 87 l~s~n~G~-~l~ag~i~g~lYlWelss--G~LL~v~--------------------~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 87 LASSNLGY-FLLAGTISGNLYLWELSS--GILLNVL--------------------SAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred eecCCCce-EEEeecccCcEEEEEecc--ccHHHHH--------------------HhhccceeEEEEeCCCcEEEecCC
Confidence 33334455 555667899999997766 3331111 111234566655555555555 6
Q ss_pred CCeEEEEecCCCCcCCCCCCccccccEEecccC--CCcEEEEEeCCCeEEEEeeCCCEEEecCCCCC---CCccCCCCCc
Q 001683 280 EGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLS--GINVQSVSCGEFQTCALTKSGEIYTWGHNNHG---ADLVGERRSR 354 (1030)
Q Consensus 280 dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G~~hslaLT~dG~VY~WG~n~~~---~g~LG~~~~~ 354 (1030)
||.|++|=.-.-- ...+...|.++..+. ...|.++.+|..- .+++||+-+...-- ...+|. --.
T Consensus 144 Dg~V~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~wdlS~g~-LLl 212 (476)
T KOG0646|consen 144 DGAVLVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRTIKLWDLSLGV-LLL 212 (476)
T ss_pred CccEEEEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCceEEEEEeccce-eeE
Confidence 8889999642210 011111444444443 3457777766543 23444444332100 000000 000
Q ss_pred ceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEE
Q 001683 355 SHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTY 393 (1030)
Q Consensus 355 ~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~w 393 (1030)
...+|. ..+-+.+.-+..+.++=+++|.+|..
T Consensus 213 ti~fp~-------si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 213 TITFPS-------SIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred EEecCC-------cceeEEEcccccEEEecCCcceEEee
Confidence 111111 11234445566677777888888765
No 113
>PRK02119 hypothetical protein; Provisional
Probab=65.42 E-value=31 Score=30.87 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
+|+..+.+.+..|+.|.-.|+.-|+.+.+-+-
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~ 33 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALI 33 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777766655443
No 114
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=65.39 E-value=57 Score=34.23 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=10.1
Q ss_pred HHHHhHhHHHHHHHHHHHHHHhh
Q 001683 851 EAEKCKAAKEIIKALAVRLHTLS 873 (1030)
Q Consensus 851 e~~k~kaake~ik~l~~qlk~~~ 873 (1030)
.-+|-++.++.++.+..++.++-
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 115
>PHA03098 kelch-like protein; Provisional
Probab=65.25 E-value=1.5e+02 Score=36.11 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=12.0
Q ss_pred CeEEEEeeCCCEEEecCC
Q 001683 324 FQTCALTKSGEIYTWGHN 341 (1030)
Q Consensus 324 ~hslaLT~dG~VY~WG~n 341 (1030)
.|+++ .-+|+||++|..
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 45544 448999999975
No 116
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.22 E-value=44 Score=42.61 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=56.9
Q ss_pred chhhHHHHHHHHHH-HHH-------HHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEE-VQR-------LRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 799 ~~~~~~~~~~l~~e-v~~-------l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk 870 (1030)
..=|.++-++|.+| +.+ ++..|+.|+.+.++|-.+|++++.+.++.-..|..=++|.+.|+|-=+.|..+++
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566555 222 2224667888889999999999998888877887777899999999999988877
Q ss_pred Hhhhhc
Q 001683 871 TLSEKI 876 (1030)
Q Consensus 871 ~~~e~l 876 (1030)
.|..++
T Consensus 618 ~vl~~l 623 (717)
T PF10168_consen 618 RVLQLL 623 (717)
T ss_pred HHHHHH
Confidence 775543
No 117
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.21 E-value=20 Score=44.65 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=36.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
|..++.+.+..|+..-|+.+|+++++.+.++...+-.|-|++.-+++
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLK 517 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 66789999999999999999999998888887766665555544443
No 118
>PRK00846 hypothetical protein; Provisional
Probab=64.77 E-value=56 Score=29.62 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcc
Q 001683 817 RDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKIS 877 (1030)
Q Consensus 817 ~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp 877 (1030)
.+.+..|+.+.-.|+.-|+.+.+.+-+-+.. ..+ -++-|+.|+.+||+|....+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~----I~~---L~~ql~~L~~rL~~~~~s~~ 65 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLT----GAR---NAELIRHLLEDLGKVRSTLF 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHhccccC
Confidence 3445555555555555555544443332221 111 12236667777777765544
No 119
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.71 E-value=28 Score=42.52 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=58.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
+..+|+..+.-.-|..|+.+|+.|++.|+++.+..+..+.-...++.+......+==|+-.-+|-=||.|..+++.+
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44567777777778999999999999999999999888888888888766666554455556666666666655544
No 120
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=64.55 E-value=31 Score=41.15 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=21.8
Q ss_pred ccceeEEE-eec-ccc---CHHHHHHHHH---hccchhheecccc
Q 001683 982 QKGLKRVR-FSR-RRF---TEKAAERWWE---ENQVVVYQKYGIE 1018 (1030)
Q Consensus 982 ~~~~~r~~-f~~-~~f---~~~~~~~ww~---~n~~~~~~~~~~~ 1018 (1030)
++.|-||| |.+ +.| .+.+|..+.+ ++..+|++...++
T Consensus 273 t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp 317 (418)
T TIGR00414 273 TKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELP 317 (418)
T ss_pred CCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 46777876 665 444 2445555544 4566677666655
No 121
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.42 E-value=24 Score=42.47 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
|.+++.+|+.+++.++++.+..+..|+++++
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5566666666666666666666666666555
No 122
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.24 E-value=26 Score=37.72 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=34.0
Q ss_pred chhhHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH---HHHHHHHHHhH
Q 001683 799 EKDLSESNKML----------NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW---SLAREEAEKCK 856 (1030)
Q Consensus 799 ~~~~~~~~~~l----------~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~---~~a~ee~~k~k 856 (1030)
.+.+++-|+++ .|||+-+|++++.|+...+.++.|...++.-|.++- +-|.|++.|+|
T Consensus 71 ene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRk 141 (246)
T KOG4657|consen 71 ENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRK 141 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777744 466666666666666666666666665554444333 45555555543
No 123
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=64.10 E-value=39 Score=37.63 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=57.0
Q ss_pred chhhHHHHHHH------HHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 001683 799 EKDLSESNKML------NEEVQRLRDQARNLE------KQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALA 866 (1030)
Q Consensus 799 ~~~~~~~~~~l------~~ev~~l~~q~~~~~------~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~ 866 (1030)
.++|+++-..| .=+|.=||..++.+. .+.+..+.|.+...++++.+-.-..++-++.+.+..-++-+.
T Consensus 148 ~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~ 227 (269)
T PF05278_consen 148 ESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIK 227 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444444 224455555444333 346677788888999988887777777888888888899999
Q ss_pred HHHHHhhhhcchh
Q 001683 867 VRLHTLSEKISAA 879 (1030)
Q Consensus 867 ~qlk~~~e~lp~~ 879 (1030)
.++.+|.+||-.-
T Consensus 228 ~~i~e~~~rl~~l 240 (269)
T PF05278_consen 228 ERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
No 124
>PRK14160 heat shock protein GrpE; Provisional
Probab=63.92 E-value=43 Score=36.15 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=36.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKAL 865 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l 865 (1030)
...+++.++-|.+++.+|+.++..|+.+....-++.+-++|+.+.-...+..-| ..+.++++|-.+
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a-~e~~~~~LLpVl 121 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA-CEDVLKELLPVL 121 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHH
Confidence 344555556666666677777776666666666666655555554444443321 234444444333
No 125
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.54 E-value=63 Score=30.40 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 803 SESNKMLNEEVQRLRDQARNLEKQCQIGN---------QKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 803 ~~~~~~l~~ev~~l~~q~~~~~~~~~~~~---------~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
..-.+.+..|+.+|+.+++.|+....... .||+.+.++++.|+..++. .|-+.-.+-|+.|..+-+.+
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKKEREL 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999988765544 6899999999999998886 56666666666666544433
No 126
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.21 E-value=1.2e+02 Score=34.95 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW 845 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~ 845 (1030)
..+||.+.|.|+.-.++|++.++.|+|+.......+.-+++|.+||.
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888888743
No 127
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=63.13 E-value=1.1e+02 Score=38.11 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=31.8
Q ss_pred EEeCCCeEEEEeCCCCCCCCCCCCCCcceeEEeccccccc---EEEEEeCCCceeEEecCCeEEEEeC
Q 001683 498 GLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEF---VKGISSGSYHVAVLTSGGSVYTWGK 562 (1030)
Q Consensus 498 aLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~V~~~l~~~~---V~~Ia~G~~Hs~aLTsdG~Vy~WG~ 562 (1030)
+..-+|.||+.|.... +... .. ...-+ +.... |..+..+..+..+..-+|++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~-----~~-VE~yd-p~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL-----SS-VERYD-PETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc-----ce-EEEEc-CCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 5566789999995432 1111 01 11111 11122 2234456777777788999999985
No 128
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=62.91 E-value=20 Score=32.96 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKA 857 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~ka 857 (1030)
-+|.+|.+||..|..|-++.+.+++..+..++. |.|||++.+.
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a----Ak~EA~RAN~ 66 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYA----AKSEANRANT 66 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 389999999999999988888888876655544 5567665543
No 129
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=62.77 E-value=9.5 Score=43.84 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=40.6
Q ss_pred ccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHHHh
Q 001683 35 QCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAAIS 80 (1030)
Q Consensus 35 ~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~li~ 80 (1030)
|+...+.+|++||-|---+++.+|=|=|+|.+||+.||..|.+-+.
T Consensus 227 R~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~ 272 (506)
T KOG3551|consen 227 RNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVN 272 (506)
T ss_pred hhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHh
Confidence 4556689999999998889999999999999999999999876554
No 130
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=62.58 E-value=39 Score=35.94 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 806 NKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
...+.+||..|++|++.|+.+.....++++.++|+++.-..-|. ..+.-+-|++++-.|.+
T Consensus 38 ~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~-k~a~e~~~~dlLpviDn 98 (193)
T COG0576 38 LEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK-KYAIEKFAKDLLPVIDN 98 (193)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999999999876666665444444 23344777777766665
No 131
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=62.38 E-value=2.5 Score=45.85 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 001683 805 SNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 805 ~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk 870 (1030)
.+..|..|...||.||..|..+++.+-.|.+++ ++++++-.---| +|-.++|-.|.-|...|+
T Consensus 52 ~~~~~~~E~l~LQrQi~qLt~~lQ~~~~enekl-k~~~K~~kalle--Skl~~~kk~IdrlK~~l~ 114 (249)
T PF10422_consen 52 QSSKLVDETLLLQRQITQLTSQLQSQKQENEKL-KELQKTQKALLE--SKLSNKKKEIDRLKLKLE 114 (249)
T ss_dssp ------------------------------------------------------------------
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 345789999999999999999999998888866 333332211112 577788888887765444
No 132
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.13 E-value=39 Score=44.48 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=39.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchh
Q 001683 832 QKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 832 ~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~ 879 (1030)
.++..++++++|+...+.+|.+|.+-++.-++.|..+|+++..+.--.
T Consensus 487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457789999999999999999999999999999999886655443
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=62.05 E-value=97 Score=39.72 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=42.8
Q ss_pred eCCCeEEEEeeCCC-EEEecCCCCCCCccCCCCC-cceeeceeeeccCCCccEEEEEeCCCceEEEeeCCc--EEEEecC
Q 001683 321 CGEFQTCALTKSGE-IYTWGHNNHGADLVGERRS-RSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQ--LFTYGDG 396 (1030)
Q Consensus 321 ~G~~hslaLT~dG~-VY~WG~n~~~~g~LG~~~~-~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~--Vy~wG~N 396 (1030)
.++...++++.+|+ |+++|.+.. +-.-.. .....|..+. ..+..|..|+|-..|.+.-++++. +|.++.+
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~----ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGD----IRKWKTNSDEEEPETID--ISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCc----eEEeecCCcccCCchhh--ccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 34455666777775 666666621 111111 1113454442 156789999999999999999886 4666654
Q ss_pred CC
Q 001683 397 TF 398 (1030)
Q Consensus 397 ~~ 398 (1030)
..
T Consensus 87 ~~ 88 (933)
T KOG1274|consen 87 EE 88 (933)
T ss_pred Cc
Confidence 43
No 134
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=61.56 E-value=55 Score=40.06 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=27.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQK 840 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~ 840 (1030)
...|++.+.-|..+|.+|+++++..+++|+.+..+.+.....
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~ 200 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTES 200 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777776666666666555544433
No 135
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=61.40 E-value=79 Score=31.07 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhhhHH----------------HHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQC---QIGNQK----------------VQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVR 868 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~---~~~~~~----------------~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~q 868 (1030)
.|.+||+.++.|+++|..-| ++.+.+ +.+++-+++|+-.-+-+|-++-.+-+|.|++--++
T Consensus 34 ~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~ 113 (131)
T KOG1760|consen 34 DLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDE 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666433 333333 56788899999999999999999999999998889
Q ss_pred HHHhh
Q 001683 869 LHTLS 873 (1030)
Q Consensus 869 lk~~~ 873 (1030)
||.|-
T Consensus 114 LK~~L 118 (131)
T KOG1760|consen 114 LKKVL 118 (131)
T ss_pred HHHHH
Confidence 88763
No 136
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=61.16 E-value=27 Score=41.70 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHH---HHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLA---REEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a---~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
..+|.+|-.|-+.|..+.+....|..+..|++..+..-. .+--++.|+.|+-|+.|.++++++.++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555555422111 011123344455555555555544333
No 137
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.38 E-value=68 Score=38.76 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQ---------------ARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALA 866 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q---------------~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~ 866 (1030)
....-++|++-|+-+|+| +..|+.+-++|-++|+.+.++.+-.-.+|..=+.+-..|+|==.+|.
T Consensus 557 ~~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~ 636 (741)
T KOG4460|consen 557 PEECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLM 636 (741)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455566777777777765 57888888899999999988888777777777777888888888888
Q ss_pred HHHHHhhh
Q 001683 867 VRLHTLSE 874 (1030)
Q Consensus 867 ~qlk~~~e 874 (1030)
..+|.+-.
T Consensus 637 ~~~~~L~~ 644 (741)
T KOG4460|consen 637 NRMKKLLH 644 (741)
T ss_pred HHHHHHHh
Confidence 88887643
No 138
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.62 E-value=24 Score=31.91 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~ 835 (1030)
+++||..|..|.+|+..++++-+.|.++-++..+|-+
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666555555444433
No 139
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=59.23 E-value=1.1e+02 Score=30.68 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHH----HHHHHHH----HHHHHhHhHHHHHHHHHHHHHHhhhhcchhh
Q 001683 814 QRLRDQARNLEKQCQIGNQKVQECQQKIE----EAWSLAR----EEAEKCKAAKEIIKALAVRLHTLSEKISAAK 880 (1030)
Q Consensus 814 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~----ea~~~a~----ee~~k~kaake~ik~l~~qlk~~~e~lp~~~ 880 (1030)
..|++|+..+.++|++++.+.++.-+.++ ....-++ .|-++.. |.++-|..||+.+ +.||.|.
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~---e~k~~l~~ql~qv-~~L~lgs 93 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERL---EQKNQLLQQLEQV-QKLELGS 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHS-TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-hcCCCCC
Confidence 56888999999999999999988877765 4444433 3333333 4466677777765 5677774
No 140
>PRK14143 heat shock protein GrpE; Provisional
Probab=58.97 E-value=55 Score=36.05 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
.....+-|.+|+..|+.+++.|+.+.-....+++.++|+.+.-..-++. -+..+.++++|..+.+
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~-~a~~~~~~~lLpV~Dn 129 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL-QLKCNTLSEILPVVDN 129 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Confidence 3334445778888888888888888888888888777777665555544 4556777777766654
No 141
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=58.93 E-value=4.9e+02 Score=33.23 Aligned_cols=322 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred ceEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccccCCCEEEEEecCCEEEEEE--eCCeEEEEec
Q 001683 211 LIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVT--KEGEVFCWGE 288 (1030)
Q Consensus 211 ~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~hs~~Lt--~dG~VysWG~ 288 (1030)
+......+|..++-|.+. .-|.=.-. +..........-.+.......+|+.|.-....-++++ +|=.+..||.
T Consensus 100 ~~i~fSPng~~fav~~gn-~lqiw~~P----~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGN-LLQIWHAP----GEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred ceEEECCCCcEEEEEecc-eeEEEecC----cchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Q ss_pred CCCCcCCCCCCccccccEEecccCCCcEEEE-EeCCCeEEEEeeCCCEEEecCC-----------------CCCCCccCC
Q 001683 289 GKDGRLGHKVNMDVSCPKLVECLSGINVQSV-SCGEFQTCALTKSGEIYTWGHN-----------------NHGADLVGE 350 (1030)
Q Consensus 289 N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~V-a~G~~hslaLT~dG~VY~WG~n-----------------~~~~g~LG~ 350 (1030)
+.. ....|..+....+.-|--+ ..-..+.+-+.+||.++.|+.+ .-...--+.
T Consensus 175 ~~~---------k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~E 245 (893)
T KOG0291|consen 175 DGN---------KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGE 245 (893)
T ss_pred ccc---------cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccch
Q ss_pred CCCcceeeceeeeccCCCccEEEEEeCCCc-------------------------------------eEEEeeCCcEEEE
Q 001683 351 RRSRSHWLPRKLFDTLDGVRVSKVACGEWH-------------------------------------TAIVSTSGQLFTY 393 (1030)
Q Consensus 351 ~~~~~~~~P~~v~~~l~~~~Iv~IacG~~H-------------------------------------s~aLT~dG~Vy~w 393 (1030)
........-..-...+.... .+|.|...| ++++...|.-.++
T Consensus 246 ek~~~~~~~k~~k~~ln~~~-~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~ 324 (893)
T KOG0291|consen 246 EKTHKIFWYKTKKHYLNQNS-SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAF 324 (893)
T ss_pred hhhcceEEEEEEeeeecccc-cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEE
Q ss_pred ecCCCcccCCCCCCCcCCCeEeeecCCCeEEEEEecCCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCCCCCcee
Q 001683 394 GDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKL 473 (1030)
Q Consensus 394 G~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g~~~~~~ 473 (1030)
|....|||+.-..+....-.+-+.-.. .|..++-...-.++.+- ..||+|-.| ......-
T Consensus 325 g~~klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG---------~eDgKVKvW----------n~~SgfC 384 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATG---------AEDGKVKVW----------NTQSGFC 384 (893)
T ss_pred cCCccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEec---------cCCCcEEEE----------eccCceE
Q ss_pred eeeEeeecccCceEEEEeccceeEEEeCCCeEEEEeCCCCCCCCCCCCCCcceeEEecccccccEEEEEeCCCceeEEec
Q 001683 474 LPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSGSYHVAVLTS 553 (1030)
Q Consensus 474 ~P~~V~~l~~~~Iv~IacG~~htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~V~~~l~~~~V~~Ia~G~~Hs~aLTs 553 (1030)
.-+--..-.....+++..-.+..+...-||.|-+|--..| ..-..-..|.++.. .+++++.
T Consensus 385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----rNfRTft~P~p~Qf---------------scvavD~ 445 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----RNFRTFTSPEPIQF---------------SCVAVDP 445 (893)
T ss_pred EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----ceeeeecCCCceee---------------eEEEEcC
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCcceeeeeccccCCeeEEeeecCC
Q 001683 554 GGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSS 598 (1030)
Q Consensus 554 dG~Vy~WG~N~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~IacG~~ 598 (1030)
.|+|.+-|.-+ ..-+.|..++..+..+|-.|..
T Consensus 446 sGelV~AG~~d------------~F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 446 SGELVCAGAQD------------SFEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred CCCEEEeeccc------------eEEEEEEEeecCeeeehhcCCC
No 142
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.82 E-value=56 Score=34.24 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQ 828 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~ 828 (1030)
..|.+|+.+++..+..+....+
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555554444433333
No 143
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.53 E-value=3.9 Score=40.14 Aligned_cols=56 Identities=34% Similarity=0.791 Sum_probs=38.7
Q ss_pred cCCCCCCcccccc-ccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhh
Q 001683 611 VGDQSSCSQCRMP-FGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQ 673 (1030)
Q Consensus 611 ~~d~s~C~~C~~~-F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~ 673 (1030)
+.+...|..|.+. |. ..--|+|..|..-||..|..+- .| ..++...||..|-...+
T Consensus 62 v~ddatC~IC~KTKFA-DG~GH~C~YCq~r~CARCGGrv----~l--rsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFA-DGCGHNCSYCQTRFCARCGGRV----SL--RSNKVMWVCNLCRKQQE 118 (169)
T ss_pred cCcCcchhhhhhcccc-cccCcccchhhhhHHHhcCCee----ee--ccCceEEeccCCcHHHH
Confidence 3455567677544 43 2235899999999999998754 33 34678889999976643
No 144
>PRK14148 heat shock protein GrpE; Provisional
Probab=58.18 E-value=61 Score=34.61 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 803 SESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 803 ~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
.+..+-|.+++..|+++++.|+.+....-.+++.++|+++.-..-+.. -+..+.+++++-.+.+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~-~a~~~~~~~LLpV~Dn 102 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARK-FGIEKFAKELLPVIDS 102 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 344566888888999999988888888888888777777665555544 2335666666665554
No 145
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=57.72 E-value=41 Score=42.94 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=53.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARN-LEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~-~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
.|.-.+++.-|.+||.+||.|++. -..|....+..+|++.|=++|-. .-=| +|.++..++-+.+.+||..|...+
T Consensus 359 edpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~-~twE--Ekl~ktE~in~erq~~L~~~gis~ 434 (1714)
T KOG0241|consen 359 EDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEIT-VTWE--EKLRKTEEINQERQAQLESMGISL 434 (1714)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHH-hHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777899999999999887 44555556666666666555522 2223 478888899999999999987653
No 146
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=57.70 E-value=52 Score=41.57 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
-+.+++.+++++...+.++.+....+|+++++++++
T Consensus 432 ~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 432 EAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666644
No 147
>PRK14154 heat shock protein GrpE; Provisional
Probab=57.70 E-value=50 Score=35.57 Aligned_cols=59 Identities=8% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
.|.+|+..|++|++.|+.+......+++.++|+.+.-..-+.+ .+..+.++++|..+.+
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~-~a~e~~~~~LLpVlDn 114 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIK-FGSKQLITDLLPVADS 114 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 3666777777777777777777777777666665554444333 2234556665555544
No 148
>PRK14153 heat shock protein GrpE; Provisional
Probab=57.47 E-value=39 Score=36.02 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=45.3
Q ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 800 KDLSESN--KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 800 ~~~~~~~--~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
+.||..+ +-+.+|+.+|++|++.|+.+....-.+.+.++|+.+.-..-+..-+ .-+.++++|-.+.+
T Consensus 27 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a-~~~~~~~LLpv~Dn 95 (194)
T PRK14153 27 EELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFV-LEQVLLDLLEVTDN 95 (194)
T ss_pred HHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 4455444 3578888999999999998888888888877777765544443322 23666666655554
No 149
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=57.36 E-value=14 Score=45.60 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=53.5
Q ss_pred eEEEeeCCcc---ceEeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHHHhc
Q 001683 5 FLIWYSGQKE---KQLRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAAISS 81 (1030)
Q Consensus 5 ~l~w~~~~k~---~~~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~li~~ 81 (1030)
.|.|..+... ..|+|++|..|-.=. -..|.--.+|.|||.+ |+|-|-|++-+||+.|+.-|+.....
T Consensus 597 ~Ls~~Ksp~~q~~~~Ipl~nI~avEkle--------e~sF~~knv~qVV~~d--rtly~Q~~n~vEandWldaL~kvs~~ 666 (800)
T KOG2059|consen 597 ELSYAKSPGKQPIYTIPLSNIRAVEKLE--------EKSFKMKNVFQVVHTD--RTLYVQAKNCVEANDWLDALRKVSCC 666 (800)
T ss_pred eeEEecCCccCcccceeHHHHHHHHHhh--------hhccCCCceEEEEecC--cceeEecCCchHHHHHHHHHHHHhcc
Confidence 5777765432 348888887653211 1246777899999976 69999999999999999999998877
Q ss_pred CCCC
Q 001683 82 CRRS 85 (1030)
Q Consensus 82 ~~~~ 85 (1030)
+++.
T Consensus 667 N~~r 670 (800)
T KOG2059|consen 667 NQNR 670 (800)
T ss_pred Ccch
Confidence 7653
No 150
>PRK09039 hypothetical protein; Validated
Probab=57.35 E-value=68 Score=37.27 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWS 846 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~ 846 (1030)
.+.+|..|++|++.|+.|+...+.+|...+++.+|+-.
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~ 172 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQA 172 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777666666554433
No 151
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=57.00 E-value=1.5e+02 Score=28.61 Aligned_cols=49 Identities=31% Similarity=0.357 Sum_probs=38.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHH
Q 001683 798 VEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWS 846 (1030)
Q Consensus 798 ~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~ 846 (1030)
..++.|.+.+.|..|=..|++.+.+|.++-..+.+-+..+++++.||..
T Consensus 24 slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 24 SLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888888888888888888888888888888877654
No 152
>PRK14155 heat shock protein GrpE; Provisional
Probab=56.76 E-value=45 Score=35.91 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHH
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLA 848 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a 848 (1030)
+-|.+|+.+|++|++.|+.+......+++.++|+++.-...+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888887777777776666655444333
No 153
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=56.75 E-value=58 Score=39.53 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=39.9
Q ss_pred HHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchhhhh
Q 001683 826 QCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAAKEA 882 (1030)
Q Consensus 826 ~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~~~~ 882 (1030)
.|..+..+|..+...+++ -|-++++..+.+++.++..|.++|-.+||+..+
T Consensus 80 ~~~~r~~~I~~l~~~L~~------~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~r 130 (473)
T PF14643_consen 80 HSQKRKQWIKELDEDLEE------LEKERADKLKKVLRKYVEILEKIAHLLPPDVER 130 (473)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 555566666666555554 477888999999999999999999999999644
No 154
>PLN02678 seryl-tRNA synthetase
Probab=56.68 E-value=30 Score=41.63 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHH---HHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSL---AREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~---a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
..||.+|-.+-+.|.++.+.+..|..+..|++.....- +.+-.++.+.-|+-|+.|.++++++.++|
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665555555555555555555555555431110 11122344556666777766666554443
No 155
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.58 E-value=44 Score=39.91 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHH----HHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLA----REEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a----~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
..+|..|-.+-+.|..+.+.+..|.-+..|++.+...-. .+=-++.|..|+-|+.|..+++++.+++
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555554422111 1111234455555666666555554433
No 156
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.46 E-value=80 Score=35.21 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
...++...+.+.++|.++|.+++.++++.+.+...+.......++
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~ 116 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVES 116 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777777777777666644433333
No 157
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=56.43 E-value=25 Score=34.72 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKV 834 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~ 834 (1030)
.++|.+-|..|.|||.+|+.++..+.++.+....+.
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666665544444333
No 158
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=56.36 E-value=64 Score=32.60 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH--------HHHHHHHHHHhH---hHHHHHHHHHHHHHHhhh
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA--------WSLAREEAEKCK---AAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea--------~~~a~ee~~k~k---aake~ik~l~~qlk~~~e 874 (1030)
.+.++..+|+..+.+|+..-+..+.++|+.+.++.|= -.|-..|..|.+ .+|--+..|..||+++.|
T Consensus 63 ~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~E 140 (140)
T PF10473_consen 63 ELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKELNE 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3344444455555555555555555666555555531 122233333322 233345667777777654
No 159
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=56.12 E-value=32 Score=35.37 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=18.7
Q ss_pred HHHHHHHhHHHHHHHHH---HHHHHhHhHHHHH
Q 001683 833 KVQECQQKIEEAWSLAR---EEAEKCKAAKEII 862 (1030)
Q Consensus 833 ~~~~~~~~~~ea~~~a~---ee~~k~kaake~i 862 (1030)
..++....+-||-.+|. .||.||.+++|--
T Consensus 104 ~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTC 136 (176)
T PF06364_consen 104 NQRRADMALLEAKKMASQYQKEAEKCNSGMETC 136 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 33444444555555554 7899998887754
No 160
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=55.86 E-value=55 Score=39.13 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcch
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQK---IEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~---~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~ 878 (1030)
|.+|..+|+.|+++|+.+-.....+|.+.+++ .++...-+++=.++-+..++-++.+.+++.++.-+||-
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46677777777777777777777777653322 33444444444556778888899999999999988884
No 161
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.78 E-value=74 Score=37.42 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=59.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH--------------HHhHhHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEA--------------EKCKAAKEIIKA 864 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~--------------~k~kaake~ik~ 864 (1030)
++.+...-..|-.|+..||+.+..|+-.|+.++.+.||+..+++-+-.--.+|- ...+|..|+|.-
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELiee 378 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEE 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455666667888999999999999999999999999998888876655444332 346788888888
Q ss_pred HHHHHHHhhhhc
Q 001683 865 LAVRLHTLSEKI 876 (1030)
Q Consensus 865 l~~qlk~~~e~l 876 (1030)
|..+|.-+-.+.
T Consensus 379 lrkelehlr~~k 390 (502)
T KOG0982|consen 379 LRKELEHLRRRK 390 (502)
T ss_pred HHHHHHHHHHHH
Confidence 888777665543
No 162
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=55.67 E-value=61 Score=34.32 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
+.+|...|.-|-.|+.+|+..|+..++-...+-.||..+.++++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999888766666666665555555544
No 163
>PHA02713 hypothetical protein; Provisional
Probab=55.47 E-value=3.1e+02 Score=34.07 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=13.6
Q ss_pred CCCeEEEEeeCCCEEEecCC
Q 001683 322 GEFQTCALTKSGEIYTWGHN 341 (1030)
Q Consensus 322 G~~hslaLT~dG~VY~WG~n 341 (1030)
...+..+..-+|+||++|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33344455568999999975
No 164
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=55.41 E-value=39 Score=31.29 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQE--CQQKIEEAWSLAREEAEKCKAAKEIIKALA 866 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~--~~~~~~ea~~~a~ee~~k~kaake~ik~l~ 866 (1030)
+.+|+.+|++|.+.|+.+-...+.|+.. .+||- ||..++-.+..||..|-
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn--------ee~~~~~sr~~V~d~L~ 79 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN--------EENTRRLSRDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------HHhhccCCHHHHHHHHH
Confidence 3455666666666666666666666663 33333 44555555666666553
No 165
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=55.16 E-value=68 Score=30.56 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 815 RLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 815 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
.+-.||..|.+.-+.|.++|.+.+.+++ |--+-|+++-..|..|..||
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k--------------~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQK--------------AQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 4445788888888888888888777776 44555788888899998887
No 166
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=54.97 E-value=1e+02 Score=29.60 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+..+.++||.|++.+.++....+.++++...-++|
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777777777766665553
No 167
>PHA02713 hypothetical protein; Provisional
Probab=54.85 E-value=2.6e+02 Score=34.73 Aligned_cols=18 Identities=6% Similarity=0.285 Sum_probs=12.5
Q ss_pred CCceEEEeeCCcEEEEec
Q 001683 378 EWHTAIVSTSGQLFTYGD 395 (1030)
Q Consensus 378 ~~Hs~aLT~dG~Vy~wG~ 395 (1030)
..+..+..-+|+||++|-
T Consensus 342 R~~~~~~~~~g~IYviGG 359 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGG 359 (557)
T ss_pred hhceeEEEECCEEEEECC
Confidence 334445566899999994
No 168
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=54.71 E-value=4 Score=45.88 Aligned_cols=65 Identities=18% Similarity=0.379 Sum_probs=48.7
Q ss_pred cccccCCCCCCccccccccccccccccccCCceeeccCCC----CccccccCCCCCCCCcccChhhHHh
Q 001683 607 KSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACST----KKIINASLTPNKGKPSRVCDTCYNH 671 (1030)
Q Consensus 607 kwv~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css----~k~~~~~l~p~~~~p~RVC~~C~~~ 671 (1030)
.|+.+.+...|..|...|.|+++.|+|+.||.++|..|+. ++.++...-.......+.|..|+..
T Consensus 13 ~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 13 DWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 3667778888999999999999999999999999999987 2223333323344667777777776
No 169
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.30 E-value=41 Score=28.47 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSL 847 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~ 847 (1030)
|-.||.+|.+.+.+++.+-+....+|++.++.+++-+.|
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999999999999999888877665
No 170
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.24 E-value=50 Score=40.57 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhh
Q 001683 824 EKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLS 873 (1030)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~ 873 (1030)
.+.++.++.+++++++++.+|..--. ..++++|+++=+.++++||+|+
T Consensus 341 ~~~~~~Le~~~~~l~~~~~~~A~~Ls--~~R~~~A~~L~~~v~~eL~~L~ 388 (557)
T COG0497 341 EESLEALEKEVKKLKAELLEAAEALS--AIRKKAAKELEKEVTAELKALA 388 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 34555666666666666655433222 3578999999999999999984
No 171
>PRK14156 heat shock protein GrpE; Provisional
Probab=54.22 E-value=54 Score=34.43 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
+.+|+..|++|++.|+.+......+++.++|+.+.-...+.. -+.-+.++++|-.+.+
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~-~a~~~~~~~LLpVlDn 89 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQR-YRSQDLAKAILPSLDN 89 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 466777888888888888887888888777776665555444 2334666666655554
No 172
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.22 E-value=31 Score=33.06 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
-|.+|+..++.+++.|+++-+.+..||++++.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45666777777777777666666666666654
No 173
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.02 E-value=1.2e+02 Score=29.26 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=49.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAE 853 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~ 853 (1030)
|...+.|.+-++-|.-=+..|++|-.++.+++.-++.+|-...+.++. .-+|+.|-.
T Consensus 29 K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~ 85 (107)
T PF09304_consen 29 KTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 556888999999999999999999999999999999999999999987 888874433
No 174
>PLN02320 seryl-tRNA synthetase
Probab=53.89 E-value=24 Score=42.80 Aligned_cols=37 Identities=30% Similarity=0.572 Sum_probs=24.3
Q ss_pred ccceeEEE-eec-ccc---CHHHHHHHHHh---ccchhheecccc
Q 001683 982 QKGLKRVR-FSR-RRF---TEKAAERWWEE---NQVVVYQKYGIE 1018 (1030)
Q Consensus 982 ~~~~~r~~-f~~-~~f---~~~~~~~ww~~---n~~~~~~~~~~~ 1018 (1030)
.+.|=||| |.+ +.| .+.|++.|.++ +...|++...++
T Consensus 334 ~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLp 378 (502)
T PLN02320 334 TRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLH 378 (502)
T ss_pred CCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 57788887 777 666 46777777764 444556655554
No 175
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=53.73 E-value=19 Score=33.90 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHHHh
Q 001683 44 QQSFSIIYANGERSLDLICKDKVQAESWFLGLRAAIS 80 (1030)
Q Consensus 44 ~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~li~ 80 (1030)
..+|.|.- ..+++-|.|++++|=+.|+.-|+..|.
T Consensus 66 ~~~F~I~~--~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 66 PHSFLVSG--KQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CceEEEec--CCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 57899976 459999999999999999999998875
No 176
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=53.69 E-value=52 Score=34.43 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=7.8
Q ss_pred HhhhhHHHHHHHHhHHHH
Q 001683 827 CQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 827 ~~~~~~~~~~~~~~~~ea 844 (1030)
...++.+|+.+..|++.-
T Consensus 122 ~~~~~~ki~e~~~ki~~e 139 (177)
T PF07798_consen 122 QAKQELKIQELNNKIDTE 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 177
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=53.58 E-value=78 Score=31.84 Aligned_cols=60 Identities=25% Similarity=0.213 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHhHHHHHHHH-HHHHHHhHhHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQ--CQIGNQKVQECQQKIEEAWSLA-REEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~--~~~~~~~~~~~~~~~~ea~~~a-~ee~~k~kaake~ik~l~~ 867 (1030)
-|+.|+..++..+..|++. ++-....++++..+++.|-... .+...+..++..+|.-+..
T Consensus 71 ALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~ 133 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAK 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3678888888888888877 6667777778888887777666 4445555555555555444
No 178
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=53.31 E-value=90 Score=28.97 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 808 MLNEEVQRLRDQARNLEKQC-QIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~-~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
-|.+|+..|+..++.|.... +.-..++.....++++...-+++ .+++....+..+.+++++.
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~ 64 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARD------RAEDAADQAREQAREAAEQ 64 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 36778888888887776543 33445566666666666655554 3334444444455554443
No 179
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=52.95 E-value=85 Score=35.57 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQI-------GNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~-------~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
+|.+..-+.-|..|+..|+.+++.++.||+. .+.+|..+++.+++++..-.+==.+..+.+|=|.+|..
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 4555555555555666666655555555543 33445555555555554443333444444444444443
No 180
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.95 E-value=1.1e+02 Score=33.76 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
.+|-..|.++++.|+.+.+..+...++.++
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~ 77 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLER 77 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333333
No 181
>PLN02153 epithiospecifier protein
Probab=52.80 E-value=4e+02 Score=30.42 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=12.1
Q ss_pred CeEEEEeeCCCEEEecCC
Q 001683 324 FQTCALTKSGEIYTWGHN 341 (1030)
Q Consensus 324 ~hslaLT~dG~VY~WG~n 341 (1030)
.|++++. +++||++|..
T Consensus 25 ~h~~~~~-~~~iyv~GG~ 41 (341)
T PLN02153 25 SHGIAVV-GDKLYSFGGE 41 (341)
T ss_pred cceEEEE-CCEEEEECCc
Confidence 4665544 6899999865
No 182
>PRK14162 heat shock protein GrpE; Provisional
Probab=52.73 E-value=76 Score=33.88 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
+-|.+++..|+.+++.|+.+....-.+++.++|+.+.-..-+...+ ..+.+++++-.+.+
T Consensus 42 ~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a-~~~~~~~LLpV~Dn 101 (194)
T PRK14162 42 EDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYE-SQSLAKDVLPAMDN 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 3467888889999999988888888888877777776555555433 34566666655554
No 183
>PRK10869 recombination and repair protein; Provisional
Probab=52.72 E-value=47 Score=41.16 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH-----HHhHhHHHHHHHHHHHHHHhh
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEA-----EKCKAAKEIIKALAVRLHTLS 873 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~-----~k~kaake~ik~l~~qlk~~~ 873 (1030)
+||...+.+.+.--+..+..+..+++++++++++..-..+-| .+.+||+++-+.++.+|++|.
T Consensus 320 ~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 320 EELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444444443333333333344444545554444333333322 345789999999999999985
No 184
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.31 E-value=75 Score=41.11 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHH
Q 001683 64 DKVQAESWFLGLR 76 (1030)
Q Consensus 64 ~~~ea~~W~~GL~ 76 (1030)
|.++.+.|..-..
T Consensus 39 ~~~~i~~~l~~~~ 51 (782)
T PRK00409 39 DFEEVEELLEETD 51 (782)
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444333
No 185
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.22 E-value=60 Score=41.48 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=17.0
Q ss_pred CcEEEEE-----eCCCeEEEEeeCCCEEEe
Q 001683 314 INVQSVS-----CGEFQTCALTKSGEIYTW 338 (1030)
Q Consensus 314 ~~I~~Va-----~G~~hslaLT~dG~VY~W 338 (1030)
..|++|. ..+.|.++||.|+.+-.+
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 4566764 346788888888876554
No 186
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.11 E-value=75 Score=39.08 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 001683 813 VQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEK 854 (1030)
Q Consensus 813 v~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k 854 (1030)
|++|+.+++.|+.+.+.+..+|+++..+++++-.-+..|.-|
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~ 472 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRK 472 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444444444444444443333
No 187
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.94 E-value=90 Score=35.60 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=36.0
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHhHHHHHHHHHHHHHHhHhH
Q 001683 800 KDLSESNKML---NEEVQRLRDQARNLEKQCQIGNQKVQEC---QQKIEEAWSLAREEAEKCKAA 858 (1030)
Q Consensus 800 ~~~~~~~~~l---~~ev~~l~~q~~~~~~~~~~~~~~~~~~---~~~~~ea~~~a~ee~~k~kaa 858 (1030)
+.|++.-+.+ .+|..+||.|-+.|..+.-+-..=+.++ .+++++.++-++||-..-++-
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666555 5677888887777776654433333333 356677777777776655544
No 188
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.79 E-value=1.2e+02 Score=34.28 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 837 CQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 837 ~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
+.+++++.-..+.+-+++.+.-.+-|+.+-..|+++-.+|
T Consensus 205 ~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 205 LRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666677777777666665543
No 189
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=51.77 E-value=1.2e+02 Score=28.23 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKI 841 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 841 (1030)
.++..|+.|+..+..+....+.++++++--+
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~ 35 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTL 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444333
No 190
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=51.74 E-value=1.4e+02 Score=31.90 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=59.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH--------HHhHhHHHHHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEA--------EKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~--------~k~kaake~ik~l~~qlk 870 (1030)
...++.....+.+|+..|+-+.+.|.++++..+.|-..+.++++.++.=+-..+ -|-++..+.+..-.+||.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666778899999999999999999999999999999998887776655 355666666666667777
Q ss_pred Hhhhh
Q 001683 871 TLSEK 875 (1030)
Q Consensus 871 ~~~e~ 875 (1030)
++-..
T Consensus 168 evl~~ 172 (201)
T PF13851_consen 168 EVLAA 172 (201)
T ss_pred HHHHH
Confidence 76554
No 191
>PRK14158 heat shock protein GrpE; Provisional
Probab=51.55 E-value=92 Score=33.24 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 803 SESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 803 ~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
....+-|.+++..|+++++.|+.+......+++.++|+.+.-...+.+- +..+.++++|..+.+
T Consensus 39 ~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~-a~~~~~~~lLpV~Dn 102 (194)
T PRK14158 39 ADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKY-GNESLILEILPAVDN 102 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhH
Confidence 3345568888999999999999998888888887777777655555442 334555665555544
No 192
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.42 E-value=44 Score=38.42 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
++.+|+.|++.|+++.+....+++++..++.+|
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 193
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=51.40 E-value=8.2 Score=43.85 Aligned_cols=74 Identities=23% Similarity=0.440 Sum_probs=41.3
Q ss_pred eecCCccceeeecc-ccccCCCCCCccccccccccccccccccCCceeeccCCCCccccccCCCC-CCCCcc--cChhhH
Q 001683 594 VCGSSITAAICLHK-SISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPN-KGKPSR--VCDTCY 669 (1030)
Q Consensus 594 acG~~hT~aI~~~k-wv~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~-~~~p~R--VC~~C~ 669 (1030)
.||+...+.+...+ .-.+.---.|..|+..|.|. |..|.+||.- .+.....+... ....+| +|+.|.
T Consensus 189 vCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~~-------~~l~y~~~e~~~~~~~~r~e~C~~C~ 259 (305)
T TIGR01562 189 ACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV--RVKCSHCEES-------KHLAYLSLEHDAEKAVLKAETCDSCQ 259 (305)
T ss_pred CCCChhhhhhhcccCCCCCceEEEcCCCCCccccc--CccCCCCCCC-------CceeeEeecCCCCCcceEEeeccccc
Confidence 46666554432221 12334445688888776655 5778888752 23222333221 123566 799999
Q ss_pred HhhhccC
Q 001683 670 NHLQKIT 676 (1030)
Q Consensus 670 ~~l~~~~ 676 (1030)
.-|+.+.
T Consensus 260 ~YlK~~~ 266 (305)
T TIGR01562 260 GYLKILY 266 (305)
T ss_pred cchhhhc
Confidence 9987653
No 194
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.23 E-value=65 Score=37.10 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
.|.+...+|...+..|..+-+..+.|+..+++..+|
T Consensus 167 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 167 KLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333334444444555555555555555555444
No 195
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.99 E-value=59 Score=38.98 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
-|....+=.-|.-++++||.++..|.++=+.+-.|.+++++
T Consensus 54 gDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 54 GDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667778888888877777776666666665554
No 196
>smart00030 CLb CLUSTERIN Beta chain.
Probab=50.93 E-value=61 Score=34.43 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=41.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhhhh----HHHHHHHHhHHHHHHHHHHHHHHhHhHHHHH
Q 001683 808 MLNEEVQRLRD---QARNLEKQCQIGN----QKVQECQQKIEEAWSLAREEAEKCKAAKEII 862 (1030)
Q Consensus 808 ~l~~ev~~l~~---q~~~~~~~~~~~~----~~~~~~~~~~~ea~~~a~ee~~k~kaake~i 862 (1030)
-+++||++.-. |++.|-+|.+... ..|++++++-+||..+|.|=-.|.+++.+|-
T Consensus 19 yvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 19 YINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788877665 5555555544433 4567999999999999999888888888875
No 197
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=50.85 E-value=1e+02 Score=33.41 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---------------HHHHHHHHHHHHHHhHhHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQK---------------IEEAWSLAREEAEKCKAAKEIIK 863 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~---------------~~ea~~~a~ee~~k~kaake~ik 863 (1030)
.++|++-|+++..++..++.+-+..+++.+..-..|+.+++. +++...-...|--|-++-+| |+
T Consensus 45 ~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~e-i~ 123 (230)
T PF03904_consen 45 IQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNE-IK 123 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HH
Confidence 588999999999999999998888888777777777765443 34445444455555666667 88
Q ss_pred HHHHHHHHhhhhcchhhhhc
Q 001683 864 ALAVRLHTLSEKISAAKEAK 883 (1030)
Q Consensus 864 ~l~~qlk~~~e~lp~~~~~~ 883 (1030)
-+.++++.|.+.+-.+.+..
T Consensus 124 k~r~e~~~ml~evK~~~E~y 143 (230)
T PF03904_consen 124 KVREENKSMLQEVKQSHEKY 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88999999988876654443
No 198
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=50.81 E-value=5e+02 Score=30.90 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=40.8
Q ss_pred CEEEEEe-cCCEEEEEEeCCeEEEEecCCCCcCCCCCCccccccEEec--ccCCCcEEEEEeCCCeEEEEeeCCCEEEec
Q 001683 263 DVQNISL-GAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVE--CLSGINVQSVSCGEFQTCALTKSGEIYTWG 339 (1030)
Q Consensus 263 ~I~~Ia~-G~~hs~~Lt~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~--~l~~~~I~~Va~G~~hslaLT~dG~VY~WG 339 (1030)
+|+.+.- -..+.++|++||.|+..- -.|.. ....+..+. .....+|-.+..+.+-.++||.++++|.--
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 5555553 356788999999988863 22322 111122221 111223444456666688999999999873
Q ss_pred C
Q 001683 340 H 340 (1030)
Q Consensus 340 ~ 340 (1030)
.
T Consensus 154 n 154 (410)
T PF04841_consen 154 N 154 (410)
T ss_pred C
Confidence 3
No 199
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=50.79 E-value=20 Score=34.56 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=42.6
Q ss_pred EeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHHHh
Q 001683 17 LRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAAIS 80 (1030)
Q Consensus 17 ~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~li~ 80 (1030)
|.|.+.-.|+.=-++|+.+ +..-.--+=|-|.|.+.-++|=|.|.+.+|-+.||.-|.+-|.
T Consensus 50 ldl~~~fhv~~V~asDVi~--a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 50 LDIDKLFHVRPVTQGDVYR--ADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EEccceeeeecccHHHeee--cCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 4554433333333444433 2222334789999988789999999999999999999987663
No 200
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.72 E-value=71 Score=32.71 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhhc
Q 001683 862 IKALAVRLHTLSEKI 876 (1030)
Q Consensus 862 ik~l~~qlk~~~e~l 876 (1030)
|+.++.++++..+++
T Consensus 71 ~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 71 AKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHhcc
Confidence 555666666666664
No 201
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.71 E-value=52 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
-|..+|+.|.++|..|.+.-.....+++..+..+.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666766666666666666666665544333
No 202
>PRK14139 heat shock protein GrpE; Provisional
Probab=50.36 E-value=86 Score=33.22 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
+-|.+++..|+.|++.|+.++-....+.+.++|+++.-..-+...+ .-+.++++|-.+.+
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a-~~~~~~~LLpv~Dn 94 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFA-IESFAESLLPVKDS 94 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 3467788889999999998888888888877777765544444322 23455555544443
No 203
>PLN02320 seryl-tRNA synthetase
Probab=50.21 E-value=70 Score=39.02 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
+||..|-.+.+.|..+.+....|..+..|++.
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~ 124 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMK 124 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 204
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=49.96 E-value=1.4e+02 Score=30.93 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=28.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 001683 798 VEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKC 855 (1030)
Q Consensus 798 ~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~ 855 (1030)
+.+-+.+-.+.+.+++......-+...+..+..+.+|...+++.++-+.-|.+|+.+-
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~ 104 (167)
T PRK08475 47 LKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYIL 104 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444333332233333333355555566666666666666655544
No 205
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=49.92 E-value=9.1 Score=43.53 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=41.3
Q ss_pred eecCCccceeeeccccccCCCCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCc--ccChhhHHh
Q 001683 594 VCGSSITAAICLHKSISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPS--RVCDTCYNH 671 (1030)
Q Consensus 594 acG~~hT~aI~~~kwv~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~--RVC~~C~~~ 671 (1030)
.||+...+.+...+--.+.---.|..|+..|.|. |..|.+||. +.+.....+.. ....+ -+|+.|..-
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~-------~~~l~y~~~~~-~~~~~r~e~C~~C~~Y 261 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV--RVKCSNCEQ-------SGKLHYWSLDS-EQAAVKAESCGDCGTY 261 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCccccc--CccCCCCCC-------CCceeeeeecC-CCcceEeeeccccccc
Confidence 4676665554322222344556788888877665 577888884 22322222221 11344 559999999
Q ss_pred hhcc
Q 001683 672 LQKI 675 (1030)
Q Consensus 672 l~~~ 675 (1030)
++.+
T Consensus 262 lK~~ 265 (309)
T PRK03564 262 LKIL 265 (309)
T ss_pred ceec
Confidence 8765
No 206
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=49.78 E-value=72 Score=36.75 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHhhhhcch
Q 001683 850 EEAEKCKAAKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 850 ee~~k~kaake~ik~l~~qlk~~~e~lp~ 878 (1030)
||.+..+..++-||.-..++.||-.-||.
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmEa~LPk 93 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDMEAFLPK 93 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhCCC
Confidence 45555566666666666677777766665
No 207
>PRK14141 heat shock protein GrpE; Provisional
Probab=49.65 E-value=72 Score=34.44 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALA 866 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~ 866 (1030)
|.+++..|+.|++.|+.+....-.+++.++|+.+.-...+.+ -+..+.++++|..+.
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~-~a~~~~~~dLLpViD 92 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARA-YGIAGFARDMLSVSD 92 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHh
Confidence 556666666666666666666666666665555544443333 222355555554444
No 208
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=49.61 E-value=31 Score=33.63 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~ 835 (1030)
|-...+.|..++..|+++++.+.++++....+++
T Consensus 71 Ll~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 71 LLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333
No 209
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=49.57 E-value=70 Score=34.02 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
|-.+....++.|+.+.|.++.+||+++|++++|-.+-+ .-|=-|++=+|++..
T Consensus 68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt---ta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT---TACFQANQKLKSIKE 120 (272)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33444445778889999999999999999999854432 126666666666543
No 210
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.46 E-value=81 Score=39.76 Aligned_cols=66 Identities=26% Similarity=0.362 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchh
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~ 879 (1030)
.+|-...+.+++|++.|..+|..+|.|+|+++. |++-+. .- -|-+|--|..++++|+++-.-|.+-
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~----ti~~~q--~d-~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD----TIQGAQ--DD-KKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HH-HHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 355667788899999999999999988876653 333322 22 2344445666777666665555543
No 211
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=49.12 E-value=36 Score=29.65 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhHHHHHHHHhHHHH-------HHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 821 RNLEKQCQIGNQKVQECQQKIEEA-------WSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~ea-------~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
..|..+.+..+.+|+++.+++..- -.+...|-+|....++-|..|..+|+.|
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333444445555544421 1234566667777777777777777765
No 212
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=49.06 E-value=1.8e+02 Score=36.31 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCCCcCCCCCCceeeeeEeeecccCceEEEEeccceeEEEeCCCeEEEEeC
Q 001683 450 GGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGS 510 (1030)
Q Consensus 450 ~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IacG~~htlaLt~dG~Vy~wG~ 510 (1030)
++.||+.|..+. ... ...-....|..-.. ..+.....+..+.-+..-+|++|+-|.
T Consensus 475 ~~~iYvvGG~~~-~~~-~~~VE~ydp~~~~W---~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 475 NGKIYVVGGFDG-TSA-LSSVERYDPETNQW---TMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CCEEEEECCccC-CCc-cceEEEEcCCCCce---eEcccCccccccccEEEECCEEEEEec
Confidence 899999996543 111 01111111111100 012223456677777788899999995
No 213
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=48.99 E-value=41 Score=35.48 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
.+..++.|+-|..|+.+|..+++.|..+.+..+.+.++-.+.+..
T Consensus 90 LEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~ 134 (182)
T PF15035_consen 90 LEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQ 134 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678888888888888888888888888888888776666553
No 214
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=48.98 E-value=51 Score=39.29 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=50.5
Q ss_pred chhhHHHHHHHHHHHHHHHH---------HHHHHHHHHhh-hhHHHHHHHHhHHHHHHHHH--HHHHHhHhHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRD---------QARNLEKQCQI-GNQKVQECQQKIEEAWSLAR--EEAEKCKAAKEIIKALA 866 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~---------q~~~~~~~~~~-~~~~~~~~~~~~~ea~~~a~--ee~~k~kaake~ik~l~ 866 (1030)
.+.+.+.++++.+|+..+.. -+..|+++.+. .+.||+++.+++.+.-.-.+ -|..=...+|.++.-.+
T Consensus 312 ~~~~~~a~~ii~~~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~k~lh~p~ 391 (417)
T TIGR01035 312 REEAEKAEEIVEEETAEFKQWLRSLEVEPTIKALRSLAEIVREKELEKALKKLPGLSKDVEEVLEDLARKLINKLLHAPT 391 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45577778888888877655 35677777765 67888888887642111111 12333466677777777
Q ss_pred HHHHHhhhh
Q 001683 867 VRLHTLSEK 875 (1030)
Q Consensus 867 ~qlk~~~e~ 875 (1030)
.+||++++.
T Consensus 392 ~~lk~~~~~ 400 (417)
T TIGR01035 392 VRLKQLADK 400 (417)
T ss_pred HHHHHHhcC
Confidence 789998755
No 215
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=48.72 E-value=94 Score=31.44 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAR 849 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ 849 (1030)
..++++-+.+..+|+.+.+..+.+|+-++...+.+..=|.
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daE 48 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAE 48 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567777778888888888888888888777776655443
No 216
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.72 E-value=85 Score=38.06 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcch
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~ 878 (1030)
..++++..+....|+.+|++.-..|....++.+++|++++|.+.. +--...+-|-+|..-..|++|+.++--|
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~-------~q~eL~~Lk~~ieqaq~~~~El~~~n~p 153 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQ-------KQLELSALKGEIEQAQRQLEELRETNNP 153 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------hHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 445555556666666666665555555566666666666655543 2333445667788888899999876444
Q ss_pred h
Q 001683 879 A 879 (1030)
Q Consensus 879 ~ 879 (1030)
.
T Consensus 154 k 154 (907)
T KOG2264|consen 154 K 154 (907)
T ss_pred c
Confidence 3
No 217
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=48.41 E-value=47 Score=37.60 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 001683 801 DLSESNKMLNEEVQRLRDQARNLE 824 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~~~~~ 824 (1030)
.|+.-|+.|.+|..+|+.+|+.|+
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777776664
No 218
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.33 E-value=92 Score=40.23 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~ 835 (1030)
.+|+.+++.+++.++++.+.+..+++
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444444443
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.29 E-value=1.1e+02 Score=36.39 Aligned_cols=43 Identities=21% Similarity=0.399 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 801 DLSESNKMLNEEVQR-------LRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~-------l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+.|..-+.+.+|+.. +++....+++++.+...++.++++++++
T Consensus 351 n~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 351 NQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555544 4445566777777777777777776653
No 220
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=48.26 E-value=87 Score=30.75 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=13.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHH
Q 001683 848 AREEAEKCKAAKEIIKALAVRL 869 (1030)
Q Consensus 848 a~ee~~k~kaake~ik~l~~ql 869 (1030)
-.++-.||.-+||+++.|..|=
T Consensus 50 isdkIdkCeC~Kelle~Lk~q~ 71 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQP 71 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT---
T ss_pred HHHHHHhchhhHHHHHHHhcCC
Confidence 4567778888888888877754
No 221
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=48.14 E-value=1.3e+02 Score=33.85 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHH--HHHHHHHH---HHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 814 QRLRDQARNLEKQCQIGNQKVQECQQKIE--EAWSLARE---EAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 814 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~--ea~~~a~e---e~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
.+|+.|+..|+.+ +-+..+|+.+++++. ||-.+++| +--|+++-||-...--+=|.|++||+
T Consensus 148 ~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~ 214 (271)
T PF13805_consen 148 RKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQ 214 (271)
T ss_dssp HHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655 445566666666665 33344443 33477788877766666777888884
No 222
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.09 E-value=1.7e+02 Score=28.85 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=47.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQA---RNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCK 856 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~---~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~k 856 (1030)
+.-...|....+.|.+||.+|-.+. +.+..+...++.+++.++++.+-+.-|-+|=+++..
T Consensus 36 ~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 36 QEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3345667778888999999998866 455667777889999999999999999888555443
No 223
>PRK14151 heat shock protein GrpE; Provisional
Probab=47.94 E-value=85 Score=32.96 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
-|.+++..|+.+++.|+.+......+++.++|+.+.-..-+.+- +..+.+++++-.+.+
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~-a~~~~~~~LLpv~Dn 82 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKF-ALEKFAGDLLPVVDS 82 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 35567777777787777777777777776666665544444332 223555555554443
No 224
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=47.78 E-value=4.9 Score=39.46 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQEC 837 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~ 837 (1030)
++...-=+.|..++..|..++..|+++.+.+..+|..+
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444445566666666666666666666666555544
No 225
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=47.58 E-value=31 Score=33.66 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCccceeecCCHHHHHHHHHHHHHHHhc
Q 001683 45 QSFSIIYANGERSLDLICKDKVQAESWFLGLRAAISS 81 (1030)
Q Consensus 45 ~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~li~~ 81 (1030)
.+|-|+.+.+...+-|-|+++||=+.|+.-|..-+++
T Consensus 77 ~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 77 YGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 5899999988899999999999999999999988886
No 226
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.53 E-value=1.4e+02 Score=26.65 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 813 VQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 813 v~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
+..|.+-+..|+-+.-.||.-|+++.-.+-|-|.....=.+| ++.||.+|++|-+..
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~q-------lr~L~~kl~~~~~~~ 59 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQ-------LRLLTEKLKDLQPSA 59 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcccc
Confidence 345677788899999999999999998888888765543322 566777777766553
No 227
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=47.35 E-value=46 Score=36.49 Aligned_cols=37 Identities=14% Similarity=0.374 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWS 846 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~ 846 (1030)
.+...++-++|.+|.+++.+.+.+|++...++++|..
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~ 64 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATE 64 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455566668888888888888888877766665543
No 228
>PRK04406 hypothetical protein; Provisional
Probab=47.23 E-value=1.4e+02 Score=26.85 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhh
Q 001683 862 IKALAVRLHTLS 873 (1030)
Q Consensus 862 ik~l~~qlk~~~ 873 (1030)
++.|..||+++.
T Consensus 48 l~~L~~rl~~~~ 59 (75)
T PRK04406 48 MKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHhhc
Confidence 444555555544
No 229
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=47.12 E-value=5.2e+02 Score=30.08 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=12.8
Q ss_pred CceEEEeeCCcEEEEec
Q 001683 379 WHTAIVSTSGQLFTYGD 395 (1030)
Q Consensus 379 ~Hs~aLT~dG~Vy~wG~ 395 (1030)
.|+++...+|+||.+|-
T Consensus 131 ~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 131 GHVAVSLHNGKAYITGG 147 (376)
T ss_pred ceEEEEeeCCEEEEECC
Confidence 46666557899999985
No 230
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=47.04 E-value=1.3e+02 Score=32.27 Aligned_cols=70 Identities=11% Similarity=0.238 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
+.++++..+-...+|..+..+.+.|.+-++..+.|++++++++..-- .+-...+.+|.-++.+..+|+++
T Consensus 36 i~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~----kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 36 IAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE----KDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555666666666666666665555311 11112233455555555555543
No 231
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=46.78 E-value=18 Score=25.06 Aligned_cols=18 Identities=39% Similarity=0.672 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001683 811 EEVQRLRDQARNLEKQCQ 828 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~ 828 (1030)
+||.+||..|.+|++|..
T Consensus 1 ~E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLS 18 (23)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 589999999999988753
No 232
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=46.78 E-value=1.3e+02 Score=32.68 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQK-----VQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~-----~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
.|.+.+.-+.+.+|+.+|+.++..|+++....... ++..+..++++-.- ..+.|+++||-+.++-+.|
T Consensus 32 LD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~------a~~ea~~il~~a~~~a~~v 104 (212)
T COG3599 32 LDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQA------AEAEADDILKRASAQAQRV 104 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555554433322 22222222221111 2345667777777765554
No 233
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.05 E-value=1.1e+02 Score=32.25 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=10.8
Q ss_pred HHHHhHHHHHHHHHHHHHHhHh
Q 001683 836 ECQQKIEEAWSLAREEAEKCKA 857 (1030)
Q Consensus 836 ~~~~~~~ea~~~a~ee~~k~ka 857 (1030)
+.++..+++..-|..|+++-++
T Consensus 109 ea~~~~~~~~~~A~~e~~~~~a 130 (181)
T PRK13454 109 EIQAELDVAIAKADAEIAAKAA 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554433
No 234
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=45.85 E-value=69 Score=35.54 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHhhhhc
Q 001683 803 SESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKA-AKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 803 ~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~ka-ake~ik~l~~qlk~~~e~l 876 (1030)
+.-|++|.+|+++|+.++.+|+.. +-+.+.+ +...+-.+|....++ -++-.|-|+.+|++|.++.
T Consensus 167 d~rnq~l~~~i~~l~~~l~~~~~~-------~~~~~~~--~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~ 232 (264)
T PF07246_consen 167 DRRNQILSHEISNLTNELSNLRND-------IDKFQER--EDEKILHEELEARESGLRNESKWLEHELSDAKEDM 232 (264)
T ss_pred hhHHHHHHHHHHHhhhhHHHhhch-------hhhhhhh--hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 555666777777776666666554 2222221 112222233322222 3445667777777766654
No 235
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.85 E-value=1.1e+02 Score=34.08 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcch
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~ 878 (1030)
.+|++.++++|++|-.| |+++..|+++.-.--.+.=++.|..+.=|+.|...+++.-+.|-.
T Consensus 44 ~~~~~~~q~ei~~L~~q-------i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 44 QKEKKNIQNEIESLDNQ-------IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 444444444433333334444555555566666666665555543
No 236
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.80 E-value=1.1e+02 Score=32.46 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchh
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~ 879 (1030)
+.+++.+|+++++.++.+.+..+.+|+..+..-++.-.... --++.+..++-++.|..+|+...+--|..
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 44455555555555555555555555555443333322211 22334455555666666666555555543
No 237
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=45.45 E-value=1e+02 Score=31.89 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001683 806 NKMLNEEVQRLRDQARNLEKQCQIGNQKV 834 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~~~~~~~~~ 834 (1030)
.+.+-+|.+.|++||+.|.....+++.++
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444333
No 238
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=45.18 E-value=81 Score=34.41 Aligned_cols=14 Identities=36% Similarity=0.406 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 001683 811 EEVQRLRDQARNLE 824 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~ 824 (1030)
-.|++|+-||.+|+
T Consensus 16 L~v~~LhHQvlTLq 29 (277)
T PF15030_consen 16 LRVQQLHHQVLTLQ 29 (277)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 239
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.01 E-value=2.1e+02 Score=28.37 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk 870 (1030)
+......+.+++..+.+++..+++.++.+....+.++++-+.-+.+=++.+....++|+=...+..++.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555555555555555553333333334444444444444444333
No 240
>PRK14140 heat shock protein GrpE; Provisional
Probab=44.98 E-value=1.4e+02 Score=31.86 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
|.+++..|+.++..|+.+....-.+++.++|+.+.-..-+. +.+.-+.+++++..|.+
T Consensus 42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~-~~a~~~~~~~LLpvlDn 99 (191)
T PRK14140 42 EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE-KYRAQSLASDLLPALDN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 66777788888888887777777777777776665554433 23444566666655543
No 241
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=44.94 E-value=35 Score=34.91 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLA 848 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a 848 (1030)
+....+-|.+++..|+++++.|+.+.....++++.+++++++-..-+
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~ 55 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEA 55 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667777777777777777777777777777776544433
No 242
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.80 E-value=7.2 Score=49.67 Aligned_cols=78 Identities=24% Similarity=0.411 Sum_probs=0.0
Q ss_pred chhhHHHHHHHH---HHHHHHHHHHHHHHH---HHhhhhHHHHHHHHhHH--------------------HHHHHHHHHH
Q 001683 799 EKDLSESNKMLN---EEVQRLRDQARNLEK---QCQIGNQKVQECQQKIE--------------------EAWSLAREEA 852 (1030)
Q Consensus 799 ~~~~~~~~~~l~---~ev~~l~~q~~~~~~---~~~~~~~~~~~~~~~~~--------------------ea~~~a~ee~ 852 (1030)
++.|++.|+-|. +|+..||.++..|++ |++..+.+|++|++|++ +....-.||.
T Consensus 276 i~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 276 IDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 853 EKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 853 ~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
.|..+.+.-|..+..|+.+|..++
T Consensus 356 ~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 356 KKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp ------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
No 243
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=44.79 E-value=2e+02 Score=30.11 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH----HhH-hHHHHHHHHHHHHHHhhhhcchh
Q 001683 819 QARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAE----KCK-AAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 819 q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~----k~k-aake~ik~l~~qlk~~~e~lp~~ 879 (1030)
+...|+.+.+....+++++++++.+-+.-...|.- -.| ..+|..+.+..+++++-.|+-.+
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~e 139 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTE 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666654443333221 001 25566666666666666555443
No 244
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.74 E-value=78 Score=32.61 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=41.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 001683 821 RNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHT 871 (1030)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~ 871 (1030)
+.|.+|...-..|.++..+.++|...---.+|.|.|.|.++|-+|....|.
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~ 171 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQ 171 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667777777788888888888888888888999999999999987764
No 245
>PHA03098 kelch-like protein; Provisional
Probab=44.73 E-value=3.5e+02 Score=33.07 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=11.6
Q ss_pred cceeEEEeCCCeEEEEeC
Q 001683 493 RMLTVGLTGLGKVYTMGS 510 (1030)
Q Consensus 493 ~~htlaLt~dG~Vy~wG~ 510 (1030)
..|+++ .-+|++|.+|.
T Consensus 381 ~~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 381 YNPCVV-NVNNLIYVIGG 397 (534)
T ss_pred ccceEE-EECCEEEEECC
Confidence 344443 45789999996
No 246
>PRK14145 heat shock protein GrpE; Provisional
Probab=44.41 E-value=1.5e+02 Score=31.80 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 806 NKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
.+-|.+++.+|+.++..|+.+....-.+++.++|+++.-..-+.+.+ .-+.+++++-.+.+
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a-~e~~~~~LLpV~Dn 107 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYG-KEQVILELLPVMDN 107 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHhH
Confidence 44577778888888888888877777777766666654444443322 23556665555554
No 247
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=44.24 E-value=2.5e+02 Score=27.85 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
.|.-|+..|+.+++.+..+.+....+|+.-.+.+.+|=.-=..|--||-++-+-|..|-.++.++...
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~ 74 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQE 74 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666666666665666666666655555555555555433
No 248
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=44.01 E-value=1.1e+02 Score=34.53 Aligned_cols=51 Identities=31% Similarity=0.425 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLARE 850 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~e 850 (1030)
..+..-.+-||.+|..|++++.+|+.+......+++.++.+-.|..+-+.+
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667899999999999999999999999999998888877776655
No 249
>PHA02047 phage lambda Rz1-like protein
Probab=43.91 E-value=1.4e+02 Score=28.13 Aligned_cols=28 Identities=7% Similarity=0.165 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 817 RDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 817 ~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
+...++|+.|.|..+.+|..+++++++-
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l 60 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAV 60 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666666666666655543
No 250
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=43.76 E-value=9 Score=39.26 Aligned_cols=27 Identities=30% Similarity=0.656 Sum_probs=22.5
Q ss_pred cCHHHHHHHHHhccchhheeccccccc
Q 001683 995 FTEKAAERWWEENQVVVYQKYGIEEYS 1021 (1030)
Q Consensus 995 f~~~~~~~ww~~n~~~~~~~~~~~~~~ 1021 (1030)
|++..==.||.+|+++|.++|+++..+
T Consensus 51 ~Td~gKI~WW~~Nk~~l~~KY~ip~~~ 77 (157)
T PF06092_consen 51 LTDSGKINWWLKNKDMLKEKYNIPEPD 77 (157)
T ss_pred CCccchhhHHHHhHHHHHHhcCCCCCC
Confidence 456677789999999999999998643
No 251
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=43.76 E-value=1.1e+02 Score=31.69 Aligned_cols=32 Identities=16% Similarity=0.455 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
.|..++.+|.+++.+|++.|.--|.||..+++
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999988876654
No 252
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=43.48 E-value=85 Score=35.81 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 843 EAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 843 ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
+.+.=|.+|..|-++.|++++++..+.|++++|
T Consensus 132 ~~~~~a~~~~~~~~~~k~~~~~vr~hi~~Ls~K 164 (304)
T PF02646_consen 132 ERYIEAEDEEEREAALKEHAKSVRKHIKELSSK 164 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445677788899999999999999999999
No 253
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=43.44 E-value=2.6e+02 Score=26.43 Aligned_cols=43 Identities=9% Similarity=0.192 Sum_probs=26.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKI 841 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 841 (1030)
.+.++..++-+..-+.+|...+..|+.+++....+|...-.++
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l 51 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDEL 51 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666677777777777777766666665443333
No 254
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=43.39 E-value=5e+02 Score=28.85 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred eEeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccccCCCEEEEEecCCEEEEEEeCCeEEEEecCCC
Q 001683 212 IERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKD 291 (1030)
Q Consensus 212 ~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N~~ 291 (1030)
..+-...|++.+.--+. |-.+.. ...-..|..-+....-+|-.++.-+.|. +.--||.||.|-.|..
T Consensus 25 l~agn~~G~iav~sl~s----l~s~sa--------~~~gk~~iv~eqahdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKS----LDSGSA--------EPPGKLKIVPEQAHDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEE 91 (325)
T ss_pred EEEecCCCeEEEEEehh----hhcccc--------CCCCCcceeeccccCCCeeeeeeehhhe-eeccCceEEEeeehhh
Confidence 45566677777776655 211211 1122222222233445677777765554 4456799999998877
Q ss_pred Cc-CCCCCCccccccEEecccCCCcE--EEEEeCCCeEEEEeeCCCEEEec
Q 001683 292 GR-LGHKVNMDVSCPKLVECLSGINV--QSVSCGEFQTCALTKSGEIYTWG 339 (1030)
Q Consensus 292 GQ-LG~g~~~~~~~P~~V~~l~~~~I--~~Va~G~~hslaLT~dG~VY~WG 339 (1030)
-. ++......+..|..+..++--.| ..+.-.++..++---||.+|+|-
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVD 142 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEE
Confidence 65 55555555666766643332222 22222233333333455666664
No 255
>PRK02793 phi X174 lysis protein; Provisional
Probab=43.34 E-value=1.5e+02 Score=26.37 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhhhc
Q 001683 862 IKALAVRLHTLSEKI 876 (1030)
Q Consensus 862 ik~l~~qlk~~~e~l 876 (1030)
++.|..||+++.+..
T Consensus 45 l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 45 LRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHhhcccc
Confidence 666666777765543
No 256
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=43.22 E-value=1.7e+02 Score=27.11 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=42.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVR 868 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~q 868 (1030)
+.+.+.|..++.+|.+||.+-..-++.|.++.+. |++...+.+. =...-+.++.+|+.|..+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~----L~~~~~e~~~-------~~~~l~~s~~ll~~l~r~ 65 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSAT----LRSTNDEYDG-------QSSLLKKSRKLLKKLERR 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999998888888776443 3444444333 123456667777777643
No 257
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.98 E-value=2.2e+02 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQE 836 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~ 836 (1030)
-|.+|+.+|++++.++.++..+...++|.
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666666666666666655544444443
No 258
>PRK14146 heat shock protein GrpE; Provisional
Probab=42.94 E-value=1.1e+02 Score=33.29 Aligned_cols=59 Identities=12% Similarity=0.212 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
-|.+|+..|++++..|+.+......+++.++|+.+.-..-+...+ ..+.++++|-.|.+
T Consensus 58 ~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a-~e~~~~~lLpv~Dn 116 (215)
T PRK14146 58 SLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEA-VKSLVSGFLNPIDN 116 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 456777888888888888887777888777776665555554422 23555555554444
No 259
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=42.93 E-value=7.1e+02 Score=30.42 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=48.5
Q ss_pred EEEecCCEEEEEEeCCeEEEEecCCCCcCCCCCCccccccEEecccCCCcEEEEEeCCCe-EEEEeeCCCEEEecCCCCC
Q 001683 266 NISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQ-TCALTKSGEIYTWGHNNHG 344 (1030)
Q Consensus 266 ~Ia~G~~hs~~Lt~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~h-slaLT~dG~VY~WG~n~~~ 344 (1030)
=|.||..|.+|.+-.|..+.=-.. .++..+...|..|..+++- .+-=+.+|.++.|+...+
T Consensus 216 iit~Gk~H~~Fw~~~~~~l~k~~~-----------------~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~- 277 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGGSLVKRQG-----------------IFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN- 277 (626)
T ss_pred EEEeCCceEEEEEccCCceEEEee-----------------ccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-
Confidence 378999998888777655532111 1111122234455554433 333455688999987622
Q ss_pred CCccCCCCCcceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEE
Q 001683 345 ADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFT 392 (1030)
Q Consensus 345 ~g~LG~~~~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~ 392 (1030)
.+.+ .+. +.-|.-+++++..+|.|.+
T Consensus 278 ------------~~~k---------~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 278 ------------RISK---------QVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred ------------eEEe---------Eee-ecCCceEEEEEecCccEee
Confidence 0111 122 4556667788888887776
No 260
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=42.73 E-value=9e+02 Score=31.58 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=63.7
Q ss_pred EEecCCEEEEEEeCCeEEEEecCCCCc---CCCCCCccccccEEecccCCCcEEEEEeC-----CCeEEEEeeCCCEEEe
Q 001683 267 ISLGAKHAALVTKEGEVFCWGEGKDGR---LGHKVNMDVSCPKLVECLSGINVQSVSCG-----EFQTCALTKSGEIYTW 338 (1030)
Q Consensus 267 Ia~G~~hs~~Lt~dG~VysWG~N~~GQ---LG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hslaLT~dG~VY~W 338 (1030)
++....+.+++|+.|++|..-...--. .+.|.. ....+....+.+|+.+.+- ....+++|.+|.+.-.
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~----i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP----IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC----HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 445567788999999999984322111 111111 1112333456677776651 2357788889977654
Q ss_pred cCCCCCC-CccCCCCCcceeeceeeeccCCCccEEEEE--eCCCceEEEeeCCcEEEEecCCCccc
Q 001683 339 GHNNHGA-DLVGERRSRSHWLPRKLFDTLDGVRVSKVA--CGEWHTAIVSTSGQLFTYGDGTFGVL 401 (1030)
Q Consensus 339 G~n~~~~-g~LG~~~~~~~~~P~~v~~~l~~~~Iv~Ia--cG~~Hs~aLT~dG~Vy~wG~N~~GQL 401 (1030)
-...+.. ...|. .....-++..++.+. ....+.+++|++|++|.+--...-..
T Consensus 618 ~l~~~~~~~r~G~----------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~ 673 (800)
T TIGR01063 618 SLTEFSNIRSNGI----------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPM 673 (800)
T ss_pred EhHHhhhhccCCc----------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCc
Confidence 3332210 00010 001111233455443 33356899999999999865544333
No 261
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.55 E-value=1.1e+02 Score=39.44 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=18.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH-hHhHHHHHHHHHHHHHH
Q 001683 832 QKVQECQQKIEEAWSLAREEAEK-CKAAKEIIKALAVRLHT 871 (1030)
Q Consensus 832 ~~~~~~~~~~~ea~~~a~ee~~k-~kaake~ik~l~~qlk~ 871 (1030)
.++++++++-++.+.-|++||.. -+.||+-++.+..+||+
T Consensus 550 ~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 550 QEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444555555555532 23444444444444443
No 262
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=42.54 E-value=39 Score=42.93 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=56.7
Q ss_pred eEEEeeCCcc-ceEeccccceeeccccc---------cccccC-CCCCCCCCeEEEEEcCC---CccceeecCCHHHHHH
Q 001683 5 FLIWYSGQKE-KQLRLNSVTKIIMGQRT---------VNFQCQ-PQPDRKQQSFSIIYANG---ERSLDLICKDKVQAES 70 (1030)
Q Consensus 5 ~l~w~~~~k~-~~~~l~~v~~v~~G~~t---------~~f~~~-~~~~~~~~~Fsii~~~~---~~sLdLv~~~~~ea~~ 70 (1030)
.|.|.-..++ -.++|+.|...|.|+-. ++|.-- +..-.|+.-.+|+++.. -..+.+||..+++|..
T Consensus 46 fLYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~d~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~ 125 (1189)
T KOG1265|consen 46 FLYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPPDRSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKL 125 (1189)
T ss_pred EEEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCcccccccceEEEEecCCcccceEEEEeeeeHHHHHH
Confidence 4677766555 45799999999999654 222211 12256678889999864 4577999999999999
Q ss_pred HHHHHHHHHhc
Q 001683 71 WFLGLRAAISS 81 (1030)
Q Consensus 71 W~~GL~~li~~ 81 (1030)
|..||-.|.-+
T Consensus 126 w~~~~~~l~~~ 136 (1189)
T KOG1265|consen 126 WTAGLLKLAKS 136 (1189)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 263
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.49 E-value=1.9e+02 Score=32.71 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVR 868 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~q 868 (1030)
.......+..|+..||.+|..+..+-...+.++..++..+++.-.--.+|.+.++.+..-|..|-.+
T Consensus 45 ~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 45 VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD 111 (312)
T ss_dssp -HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3455677899999999999988888888888888888888877777777777777776666665543
No 264
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.33 E-value=80 Score=32.56 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 801 DLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
.+.+-|+-|.+|+.+|+.+++.|+.+.+....+++.++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444444443333
No 265
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.31 E-value=1.7e+02 Score=36.22 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKV 834 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~ 834 (1030)
+..|+.-|..|.-|+.+|+..++.|+.+|+....++
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555444333
No 266
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=42.06 E-value=1.2e+02 Score=31.72 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHH
Q 001683 804 ESNKMLNEEVQRLRDQARNLE--KQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKE 860 (1030)
Q Consensus 804 ~~~~~l~~ev~~l~~q~~~~~--~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake 860 (1030)
=.+|+..+|+..|+.|+...+ ++.+.+..+|+++..++..--..-.++..+.+.-++
T Consensus 56 FL~d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~ 114 (168)
T PF06102_consen 56 FLDDYREKEIKELKKQLKKTKDPEEREELKRELQRMESQLKARKRKDREREVKKEHKKE 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999998875 455556667777766666544444444443333333
No 267
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.98 E-value=1.4e+02 Score=32.62 Aligned_cols=75 Identities=27% Similarity=0.345 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHH--------HHHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALA--------VRLHT 871 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~--------~qlk~ 871 (1030)
.++...-+.+.+++..++++++.|+.+....+.+|..++.+.+...+.... .||-+.|.+++. ..|..
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~----akA~~~v~~~~~~~s~~sa~~~fer 170 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA----AKAQEKVNRSLGGGSSSSAMAAFER 170 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCchhhHHHHHH
Confidence 345556667788888888888888888888888888888877765544433 233344444332 25666
Q ss_pred hhhhcch
Q 001683 872 LSEKISA 878 (1030)
Q Consensus 872 ~~e~lp~ 878 (1030)
|-+|+-.
T Consensus 171 ~e~kiee 177 (225)
T COG1842 171 MEEKIEE 177 (225)
T ss_pred HHHHHHH
Confidence 6666544
No 268
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=41.94 E-value=3.6e+02 Score=29.97 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=29.9
Q ss_pred CCccEEEEEeCCCceEEEeeCCcEEEEecCCCcc-cCCCCCCCcCCCeEe
Q 001683 367 DGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGV-LGHGNLQNVSQPKEV 415 (1030)
Q Consensus 367 ~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQ-LG~g~~~~~~~P~~V 415 (1030)
.+..|-.++.-..|.+ ..-+|.||.|-++++-. ++....-....|..+
T Consensus 61 hdgpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred cCCCeeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 3445666666555543 34469999999998866 555444444455544
No 269
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.78 E-value=2.1e+02 Score=32.79 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+-+.+|+.+|+.+.+.|.++.+..+.|-++..+++++
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776666666666666554
No 270
>PRK14147 heat shock protein GrpE; Provisional
Probab=41.68 E-value=1.2e+02 Score=31.80 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
|.+|+..|++|+..|+.+....-.+++.++|+++.-..-+.+- +..+.+++++-.+.+
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~-a~~~~~~~lLpv~Dn 80 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKF-ANEKLLGELLPVFDS 80 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhH
Confidence 5667777777777777777666677776555555433333322 223555555544443
No 271
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=41.54 E-value=54 Score=31.48 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
..+..|.-|-++.|++++.+|++.+.++|+.+..+|-++++.++-|
T Consensus 71 r~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~ 116 (120)
T KOG3478|consen 71 RTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPA 116 (120)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567777788899999999999999999999998888888776543
No 272
>PRK14163 heat shock protein GrpE; Provisional
Probab=41.36 E-value=1.7e+02 Score=31.69 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 001683 806 NKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALA 866 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~ 866 (1030)
.+-|.+++..|+.+++.|+.+......+.+.++|+++.-...+.. -+.-+.+++++-.|.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~-~a~~~~~~~LLpVlD 101 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKE-IAVANLLSELLPVLD 101 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHh
Confidence 345777777777777777777777777777665555543333332 222344554444433
No 273
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.21 E-value=44 Score=40.10 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=23.5
Q ss_pred ceEeeeCCeeEEEEEeCCCCccceeEEEeeccccCHHHHHHHHHh
Q 001683 962 EYAEQYEPGIYITFTTLPSGQKGLKRVRFSRRRFTEKAAERWWEE 1006 (1030)
Q Consensus 962 ~~~~~~e~gv~~t~~~~~~g~~~~~r~~f~~~~f~~~~~~~ww~~ 1006 (1030)
.-||+.--| ||. -||.+.+|---.+|.- ..=|..||+-
T Consensus 293 ~vie~~V~G-~V~----~dGK~GiRGrvVsk~G--~ila~A~~AG 330 (475)
T PRK13729 293 KTIDMPIKG-HVS----FRGKNGIKGEVVMRNG--KILGWAWGAG 330 (475)
T ss_pred cEEEEEEEE-EEc----cCCcCCCCceEEecch--HHHHHHHHHH
Confidence 457777777 542 4788888776677542 4555555543
No 274
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=41.04 E-value=57 Score=31.48 Aligned_cols=66 Identities=15% Similarity=0.319 Sum_probs=49.9
Q ss_pred ceEEEeeCCcc-c-e-EeccccceeeccccccccccCCCCCCCCCeEEEEEcCCCccceeecCCHHHHHHHHHHHHHHH
Q 001683 4 KFLIWYSGQKE-K-Q-LRLNSVTKIIMGQRTVNFQCQPQPDRKQQSFSIIYANGERSLDLICKDKVQAESWFLGLRAAI 79 (1030)
Q Consensus 4 ~~l~w~~~~k~-~-~-~~l~~v~~v~~G~~t~~f~~~~~~~~~~~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~li 79 (1030)
.+|-|+....+ + . |.+.+|++|..-.+. .+.+.|-.|..+| ++-+=|-|.|+-+...|..-|+-.-
T Consensus 30 NRLE~~~~~~~~~~eLi~M~~i~~V~~e~~~---------iK~~~CI~ik~k~-~~k~vlt~~d~i~l~qW~~elr~a~ 98 (116)
T cd01240 30 NRLELYGESEANKPELITMDQIEDVSVEFQQ---------IKEENCILLKIRD-EKKIVLTNSDEIELKQWKKELRDAH 98 (116)
T ss_pred ceeeecccccccCCcEEEeehhhhcchhhee---------eccCceEEEEEcC-CceEEEecCCcHHHHHHHHHHHHHH
Confidence 46888754322 2 2 688899888654332 4889999999988 6678899999999999998887543
No 275
>PRK14144 heat shock protein GrpE; Provisional
Probab=40.73 E-value=1.3e+02 Score=32.32 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
|.+++..|+++++.|+.++.....+.+.++|+++.-...|.+.+. -+.++++|-.+.+
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 107 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGV-EKLISALLPVVDS 107 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 667788888888888888888888888777766655555544322 3555555555544
No 276
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.70 E-value=1e+02 Score=27.64 Aligned_cols=19 Identities=11% Similarity=0.280 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 001683 821 RNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~ 839 (1030)
..|+.+....+.++..+++
T Consensus 36 KKLr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKK 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 277
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=40.54 E-value=1.5e+02 Score=37.79 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
..|++.|..++..|++.++....+|..+++.+.-+..+|.|=.++..+|.+-+-++..+|--|=..+
T Consensus 397 ~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 397 ESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666688899999999999999999999999999999998877654433
No 278
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=40.41 E-value=2.4e+02 Score=29.60 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=14.3
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHh
Q 001683 830 GNQKVQECQQKIEEAWSLAREEAEKC 855 (1030)
Q Consensus 830 ~~~~~~~~~~~~~ea~~~a~ee~~k~ 855 (1030)
.+.+|+..+++.++.+.-|++|+.+.
T Consensus 81 ~e~~L~~A~~ea~~ii~~A~~~ae~~ 106 (184)
T CHL00019 81 ARARLRQAELEADEIRVNGYSEIERE 106 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444
No 279
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=40.34 E-value=1.6e+02 Score=32.48 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=37.1
Q ss_pred HHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHH---HHhhhhcchhh
Q 001683 810 NEEVQRLRD--QARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRL---HTLSEKISAAK 880 (1030)
Q Consensus 810 ~~ev~~l~~--q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ql---k~~~e~lp~~~ 880 (1030)
.||+..||+ |-.+|+.-....+.++......+++.=.....|.....-+||++.++-.|+ ..|.+.+|+..
T Consensus 5 ~~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~l 80 (243)
T PF07160_consen 5 LKELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPHL 80 (243)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 345555554 444555555555555555555555555544455556677777777776654 45677888764
No 280
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.33 E-value=2.2e+02 Score=30.26 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 813 VQRLRDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 813 v~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
...|+.++..|+.+.+..+.++++.+.+.+.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555444444433
No 281
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.29 E-value=1.2e+02 Score=39.24 Aligned_cols=9 Identities=33% Similarity=0.206 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001683 844 AWSLAREEA 852 (1030)
Q Consensus 844 a~~~a~ee~ 852 (1030)
.+.-|.+|+
T Consensus 567 ~~~~~~~~a 575 (782)
T PRK00409 567 LLEEAEKEA 575 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 282
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.24 E-value=1.5e+02 Score=34.28 Aligned_cols=33 Identities=9% Similarity=0.275 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~ 835 (1030)
|+|.++ -+++|..|+.++..++.+.+....+.+
T Consensus 7 L~KL~e-t~~~V~~m~~~L~~~~~~L~~k~~e~e 39 (344)
T PF12777_consen 7 LDKLKE-TEEQVEEMQEELEEKQPELEEKQKEAE 39 (344)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444442 244555555555444444444443333
No 283
>smart00338 BRLZ basic region leucin zipper.
Probab=40.19 E-value=64 Score=27.78 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKI 841 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 841 (1030)
-|..+|..|.++...|..+......|++.++.++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666666666665544
No 284
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=39.76 E-value=1.4e+02 Score=40.12 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=20.0
Q ss_pred ccccCCC--CCCCCCeEEEEEcC-C--CccceeecCCHHHHHHHHHHHH
Q 001683 33 NFQCQPQ--PDRKQQSFSIIYAN-G--ERSLDLICKDKVQAESWFLGLR 76 (1030)
Q Consensus 33 ~f~~~~~--~~~~~~~Fsii~~~-~--~~sLdLv~~~~~ea~~W~~GL~ 76 (1030)
.|+.|.. .++-...|++|+|. | .-|| -+|=.|+-|.+
T Consensus 9 nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~i-------ldAi~~~l~~~ 50 (1164)
T TIGR02169 9 NFKSFGKKKVIPFSKGFTVISGPNGSGKSNI-------GDAILFALGLS 50 (1164)
T ss_pred CeeeECCeeEEeecCCeEEEECCCCCCHHHH-------HHHHHHHhccc
Confidence 4666653 23334467888872 2 3343 45666766644
No 285
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=39.60 E-value=89 Score=30.73 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=12.6
Q ss_pred hHHHHHHH------HHHHHHHHHHHHHHHHHHh
Q 001683 802 LSESNKML------NEEVQRLRDQARNLEKQCQ 828 (1030)
Q Consensus 802 ~~~~~~~l------~~ev~~l~~q~~~~~~~~~ 828 (1030)
+...|++| ..|+..+++++..+.++.+
T Consensus 5 l~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~ 37 (120)
T PF09969_consen 5 LEEANALLPLLRPILEEIRELKAELEELEERLQ 37 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 3444444444444444433
No 286
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=39.56 E-value=6.7e+02 Score=29.17 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=13.4
Q ss_pred CeEEEEeeCCCEEEecCC
Q 001683 324 FQTCALTKSGEIYTWGHN 341 (1030)
Q Consensus 324 ~hslaLT~dG~VY~WG~n 341 (1030)
.|+++...+|+||++|..
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999975
No 287
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.10 E-value=2.6e+02 Score=30.64 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHh
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKC-KAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~-kaake~ik~l~~qlk~~ 872 (1030)
++-+++.+....++.+..++...+.+|......++ .+..+.+.++.. ..-.+=|+.|+.+||+.
T Consensus 124 ~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk-~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 124 VLEQELERAEERAEAAESKIKELEEELKSVGNNLK-SLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555544444444 233333333332 33344466666666654
No 288
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=39.08 E-value=2.7e+02 Score=29.21 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001683 811 EEVQRLRDQARNLEKQ 826 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~ 826 (1030)
++..+++.+++.+.++
T Consensus 72 ~~Ae~~~~eA~~~~~e 87 (181)
T PRK13454 72 AAAEELKQKAVEAEKA 87 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 289
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=39.02 E-value=3.5e+02 Score=30.16 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=24.5
Q ss_pred cccEEecccCCCcEEE-EEeCCCeEEEE-eeCCCEEEecCC
Q 001683 303 SCPKLVECLSGINVQS-VSCGEFQTCAL-TKSGEIYTWGHN 341 (1030)
Q Consensus 303 ~~P~~V~~l~~~~I~~-Va~G~~hslaL-T~dG~VY~WG~n 341 (1030)
..|+.+..-.+ .|+. +-|-..|+++- ++++.|-.|-..
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec
Confidence 34555544333 3544 46888887766 778999999655
No 290
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.88 E-value=61 Score=31.54 Aligned_cols=40 Identities=10% Similarity=0.268 Sum_probs=35.3
Q ss_pred CCCCCeEEEEEcCCC---ccceeecCCHHHHHHHHHHHHHHHh
Q 001683 41 DRKQQSFSIIYANGE---RSLDLICKDKVQAESWFLGLRAAIS 80 (1030)
Q Consensus 41 ~~~~~~Fsii~~~~~---~sLdLv~~~~~ea~~W~~GL~~li~ 80 (1030)
..+.++|.|.++++. .+.-|-|.|.++=+.|+.-|+.|+.
T Consensus 71 ~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 71 EGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 456899999998876 6778999999999999999999875
No 291
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=38.86 E-value=1.4e+02 Score=33.74 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHH------------hHhHHHHHHHHHHHHHHhhhhcch
Q 001683 816 LRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEK------------CKAAKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 816 l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k------------~kaake~ik~l~~qlk~~~e~lp~ 878 (1030)
++.|...+..+....+.|+...+++++.+...+..|..= ++.+++.++...++|..+..++-+
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~ 207 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDA 207 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344566666666777777777777788777777777654 888888888888888777766443
No 292
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=38.38 E-value=24 Score=42.49 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+.+|+..|| |++.|++|.+.+++|++..++++++
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 345555555 6666666666555555555555543
No 293
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.32 E-value=2.7e+02 Score=28.93 Aligned_cols=11 Identities=36% Similarity=0.229 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 001683 843 EAWSLAREEAE 853 (1030)
Q Consensus 843 ea~~~a~ee~~ 853 (1030)
+++.-|.+|++
T Consensus 103 ~~~~~A~~ea~ 113 (175)
T PRK14472 103 EITEKAHTEAK 113 (175)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 294
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=38.24 E-value=3.3e+02 Score=28.01 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHhHHHHHHHHHHHHHHhH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQ-----ECQQKIEEAWSLAREEAEKCK 856 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~-----~~~~~~~ea~~~a~ee~~k~k 856 (1030)
+.+|..+|.++.+..-++.+..-.+|- ..++..+|+..-|.+|+.+.+
T Consensus 50 ~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~ 102 (154)
T PRK06568 50 LKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKK 102 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544433333333222222 334444555555666555444
No 295
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=38.05 E-value=1e+02 Score=40.86 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
-.|+++.+-+...|+++.++++.+..++++++...+++.+..++--..+..+..+....+|+++.|.++...+.+.
T Consensus 563 ~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~ 638 (1317)
T KOG0612|consen 563 GKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEET 638 (1317)
T ss_pred hhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455566667777777777888999999998888888888777777777777777777777777776655444333
No 296
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=38.02 E-value=60 Score=28.90 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQ 838 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~ 838 (1030)
..+|.++=+.-.+|-..|++||..|.+|.+..+.+++++.
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666666677778888888888888888888877764
No 297
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=37.82 E-value=74 Score=33.48 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchhh
Q 001683 814 QRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAAK 880 (1030)
Q Consensus 814 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~~ 880 (1030)
.++|+.|..|+++.......||.+++... . =.+.|--|+|=|.-+...+.-+||.+|++.
T Consensus 23 E~iravV~~ie~~~r~iq~~L~~vhq~~~---~----i~k~~~~are~~~~~kq~~~~LaE~~~~~q 82 (226)
T KOG3067|consen 23 EKIRAVVDEIEEKLREIQLLLQNVHQNEN---L----IPKECGLAREDLENIKQKYRMLAELPPAGQ 82 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc---c----chHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 45666777777777777777776666221 0 112355556666667778888999999885
No 298
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.60 E-value=1.3e+02 Score=34.42 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcch
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~ 878 (1030)
--|=..|.=||..|+.+++-++..+-.++|+++|-.. | +..-|+.+..|+.++.+|.+.|-.
T Consensus 104 DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~---e----lEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 104 DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIR---E----LERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566669999999999999999988888875322 2 455677888888888888777744
No 299
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.51 E-value=2.6e+02 Score=30.34 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH---HHHHhhhhcchhhh
Q 001683 821 RNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV---RLHTLSEKISAAKE 881 (1030)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~---qlk~~~e~lp~~~~ 881 (1030)
..|++..+....++|++++.-+|-..--.|=-++-.+..|-||+|.. ||.+|-.+||....
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 34445555555555555555444444444445567777888888865 89999999997653
No 300
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.39 E-value=2.9e+02 Score=28.41 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 001683 799 EKDLSESNKMLNEEV---QRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKC 855 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~ 855 (1030)
..-|.+-.+....++ .++|.+.+.|..+ .+.+|+..+++.++.+.-|.+++.+-
T Consensus 30 ~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e---~e~~L~~Ar~EA~~Ii~~A~~~a~~~ 86 (154)
T PRK06568 30 LNSLDAKILEVQEKVLKAEKLKEDAALLFEQ---TNAQIKKLETLRSQMIEESNEVTKKI 86 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 3444444444444 66677777777777777777766654
No 301
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.35 E-value=2.7e+02 Score=28.02 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=20.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 798 VEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 798 ~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
..+.+...|.-|.+....++.+++.++.++..+-.+++.++.+.++
T Consensus 35 ~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 35 EREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665544444444444444444444444444433333
No 302
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.33 E-value=2.7e+02 Score=29.95 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=9.2
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHH
Q 001683 830 GNQKVQECQQKIEEAWSLAREEA 852 (1030)
Q Consensus 830 ~~~~~~~~~~~~~ea~~~a~ee~ 852 (1030)
.+.+|+..++++++-+.-|.+|+
T Consensus 105 ~e~~L~~A~~eA~~Ii~~A~~eA 127 (205)
T PRK06231 105 AKQRHENALAQAKEIIDQANYEA 127 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.33 E-value=1.1e+03 Score=31.22 Aligned_cols=203 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCCe--EEEEeeCCCEEEecCCCCCCCccCCCCCcceeece---eeeccCCCccEEEEEeCCCceEEEeeC
Q 001683 313 GINVQSVSCGEFQ--TCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPR---KLFDTLDGVRVSKVACGEWHTAIVSTS 387 (1030)
Q Consensus 313 ~~~I~~Va~G~~h--slaLT~dG~VY~WG~n~~~~g~LG~~~~~~~~~P~---~v~~~l~~~~Iv~IacG~~Hs~aLT~d 387 (1030)
...|.+|+.+..+ .++|+.+|.|+.|-..................... ..........+.+++.-..+.+++..+
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Q ss_pred CcEEEEecCCCcccCCCCCCCcCCCeEeeecCCCeEEEEEecCCeEEEEEeeecccccccccCCeEEEEecCCCCCcCCC
Q 001683 388 GQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHV 467 (1030)
Q Consensus 388 G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~Ht~aLte~~~~~~~~~~s~G~Vy~WG~n~~GQLG~g 467 (1030)
.. ...+..-.+...+.........+....+.-.....+...+.+++-. .+|++| .+...
T Consensus 506 ~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~----------~~G~v~--------~~~~~ 564 (928)
T PF04762_consen 506 SD---SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQT----------NDGKVF--------QLSSD 564 (928)
T ss_pred cC---cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEE----------CCCEEE--------EeecC
Q ss_pred CCCceeeeeEeeecccCceEEEEeccc---eeEEEeCCCeEEEEeCCCCCCCCCCCCCCcceeEEecccccccEEEEEeC
Q 001683 468 DGERKLLPTCVTRLVDFDFVQASCGRM---LTVGLTGLGKVYTMGSAVHGQLGNPKAKDRSITVVEGKLKEEFVKGISSG 544 (1030)
Q Consensus 468 ~~~~~~~P~~V~~l~~~~Iv~IacG~~---htlaLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~V~~~l~~~~V~~Ia~G 544 (1030)
...... .+.+.+-..--+...-+.. +.+.|+.+|++|+=+ .+....+..++..
T Consensus 565 ~~~~~~--~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~----------------------~~la~~~tSF~v~ 620 (928)
T PF04762_consen 565 GELSQI--VKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYANS----------------------RLLASNCTSFAVT 620 (928)
T ss_pred CCcccc--ccCCCCCcEEEEEEECCccceeEEEEECCCCEEEECC----------------------EEEecCCceEEEE
Q ss_pred CCceeEEecCCeEEEE
Q 001683 545 SYHVAVLTSGGSVYTW 560 (1030)
Q Consensus 545 ~~Hs~aLTsdG~Vy~W 560 (1030)
..|-++.|....+...
T Consensus 621 ~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 621 DSFLLFTTTQHTLKFV 636 (928)
T ss_pred cCEEEEEecCceEEEE
No 304
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=37.33 E-value=1.1e+02 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~ 835 (1030)
.||.+|...+.+++.+..+..++++
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~ 30 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQ 30 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666666666666666555544444
No 305
>PRK14157 heat shock protein GrpE; Provisional
Probab=37.23 E-value=1.4e+02 Score=32.71 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
-|..|+.+|++|+..|+.+....-.|.+.++|+.+.=...+.+.+ .-+.+++++-.|.+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a-~~~~~~dLLpvlDn 139 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHG-IIDVLTALLPALDD 139 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhh
Confidence 466777888888888887777777777766666665444444432 23445555544433
No 306
>PRK14161 heat shock protein GrpE; Provisional
Probab=37.17 E-value=2e+02 Score=30.31 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
.+-...|++|.+.|.-++++++.|+++.+....++.+++..++.. |.+++||.-+....-...+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~---------rkR~~ke~~~~~~~a~~~~~~~ 74 (178)
T PRK14161 8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNT---------RKRLEKARDEAKDYAIATFAKE 74 (178)
T ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888777666666655555544 4455555544444445555544
No 307
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.15 E-value=2e+02 Score=29.91 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHH
Q 001683 813 VQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSL 847 (1030)
Q Consensus 813 v~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~ 847 (1030)
-.+|+.++..|..+.+.++.||.++++++..++-+
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~ 78 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQI 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666544443
No 308
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=36.91 E-value=1.7e+02 Score=37.26 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH----HHhHhHHHHHHHHHHHHHHhhhh
Q 001683 806 NKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEA----EKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~----~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
++.|.+++..|++....|+.++.....++|++.+.+.+-..-..++. .|. +-++..|.|-+|+-||-..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcC
Confidence 34444444444444444444444444444444443333211111111 122 4445666666666666543
No 309
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.81 E-value=1.9e+02 Score=30.57 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----------------HHhHHHHHHHHHHHHHHhHh
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQEC----------------QQKIEEAWSLAREEAEKCKA 857 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~----------------~~~~~ea~~~a~ee~~k~ka 857 (1030)
.|....-..-..+-|.+|++.|...+++|.-.+..+... .-.+++|...=.||=-||..
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~ 78 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEE 78 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHH
Confidence 345556666788999999999999999999998888322 35677887777787777777
No 310
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=36.67 E-value=55 Score=33.57 Aligned_cols=44 Identities=9% Similarity=0.369 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
..+...++..-+.+.+++.+|+-..++|+++||+++.-|+....
T Consensus 60 ~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~ 103 (153)
T PF08287_consen 60 DEIEPQINHLLDKAEKHLEKLQRREETLKAKCELQQGRLSNYES 103 (153)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 34455566666677899999999999999999999988875433
No 311
>PRK14164 heat shock protein GrpE; Provisional
Probab=36.61 E-value=1.4e+02 Score=32.54 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALA 866 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~ 866 (1030)
.++..|+.|++.|+.+......|.+.++|+.+.-...+.+ .++.+.+|+++-.|.
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~-~a~~~~~~~LLpVlD 131 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIE-TAKAGVATDLLPILD 131 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHh
Confidence 3455555555555555555555555555555444333322 233455555554444
No 312
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.52 E-value=2e+02 Score=36.31 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWS 846 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~ 846 (1030)
+.+.-+-|.+|+..++.+.+.++++....+.++++.+++++++-.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666666666666666666666665554433
No 313
>PHA02790 Kelch-like protein; Provisional
Probab=36.40 E-value=2.2e+02 Score=34.51 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=9.9
Q ss_pred EEeeCCcEEEEec
Q 001683 383 IVSTSGQLFTYGD 395 (1030)
Q Consensus 383 aLT~dG~Vy~wG~ 395 (1030)
++.-+|+||..|-
T Consensus 314 ~v~~~~~iYviGG 326 (480)
T PHA02790 314 GVPANNKLYVVGG 326 (480)
T ss_pred EEEECCEEEEECC
Confidence 3456899999984
No 314
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.37 E-value=1.1e+02 Score=33.15 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=25.6
Q ss_pred cccEEEEEeCCCceeEEecCCeEEEEeCCC
Q 001683 535 EEFVKGISSGSYHVAVLTSGGSVYTWGKNA 564 (1030)
Q Consensus 535 ~~~V~~Ia~G~~Hs~aLTsdG~Vy~WG~N~ 564 (1030)
+..+..+.|-..+.++||.+|.+|+|=-..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 457888999999999999999999996543
No 315
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=36.33 E-value=1.7e+02 Score=39.30 Aligned_cols=10 Identities=20% Similarity=0.684 Sum_probs=4.7
Q ss_pred EEEEeCCCCc
Q 001683 973 ITFTTLPSGQ 982 (1030)
Q Consensus 973 ~t~~~~~~g~ 982 (1030)
|.|.+.|.|.
T Consensus 1058 ~~~~~~~~~~ 1067 (1164)
T TIGR02169 1058 LELSAKPKGK 1067 (1164)
T ss_pred eEEEEEcCCC
Confidence 3444445554
No 316
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=36.31 E-value=2.9e+02 Score=24.71 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 814 QRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 814 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
.+|.+=.+.|.+..+.|..+.+..=..++--...+..|.+ |=++=++.|+-|+..|.+.+
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3566667888888888888888777777666666555555 45566899999999998765
No 317
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=36.30 E-value=14 Score=37.97 Aligned_cols=26 Identities=23% Similarity=0.602 Sum_probs=23.7
Q ss_pred ceeecCCHHHHHHHHHHHHHHHhcCC
Q 001683 58 LDLICKDKVQAESWFLGLRAAISSCR 83 (1030)
Q Consensus 58 LdLv~~~~~ea~~W~~GL~~li~~~~ 83 (1030)
.||++...+|...|+.|||.||.-.+
T Consensus 114 ~~L~t~h~~E~~~WmvGVKRLI~~~r 139 (157)
T PF07304_consen 114 VDLMTDHVDECGNWMVGVKRLIAMAR 139 (157)
T ss_dssp HHHHHSSHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHhccHHHhhhHHHHHHHHHHHHH
Confidence 58999999999999999999998755
No 318
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=36.27 E-value=2.1e+02 Score=31.02 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHH
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREE 851 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee 851 (1030)
.|.++.++-..|+++.+..+.++++..++++-|+.--.|+
T Consensus 46 ~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~Ed 85 (219)
T TIGR02977 46 TSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRED 85 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444445557788888889999999999999888643333
No 319
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=36.19 E-value=2.3e+02 Score=26.65 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHH
Q 001683 801 DLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSL 847 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~ 847 (1030)
.+...-+-+.+.+.++..++..|+++--..+.|+.+..++.-+|+.-
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~ 53 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRS 53 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666777777777777777777777777777777666543
No 320
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=36.12 E-value=1e+02 Score=36.74 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHHHHHHHH---------HHHHHHHHHhh-hhHHHHHHHHhHHHHHHHHHH--HHHHhHhHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRD---------QARNLEKQCQI-GNQKVQECQQKIEEAWSLARE--EAEKCKAAKEIIKALA 866 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~---------q~~~~~~~~~~-~~~~~~~~~~~~~ea~~~a~e--e~~k~kaake~ik~l~ 866 (1030)
...+.+..+++.+||.++.. -+..|+++++. .+.||+++-+++.+ -.-.++ |..=...++.++..-+
T Consensus 308 ~~~~~~a~~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~l~~-~~~~~~~i~~~~~~~~~kllh~P~ 386 (414)
T PRK13940 308 KYESSKAQKIIVKSLEEYLEKEKAIISNSAIKELFQKADGLVDLSLEKSLAKIRN-GKDAEEIIKRFAYEIKKKVLHYPV 386 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888877655 35788888866 67888888887631 111111 2233456667777777
Q ss_pred HHHHHhhh
Q 001683 867 VRLHTLSE 874 (1030)
Q Consensus 867 ~qlk~~~e 874 (1030)
.+||++++
T Consensus 387 ~~lk~~~~ 394 (414)
T PRK13940 387 VGMKEASK 394 (414)
T ss_pred HHHHHhhc
Confidence 78888664
No 321
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.11 E-value=2.5e+02 Score=33.49 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.9
Q ss_pred EeeeCCeeEEEEE
Q 001683 964 AEQYEPGIYITFT 976 (1030)
Q Consensus 964 ~~~~e~gv~~t~~ 976 (1030)
.+|.+|..|+-|+
T Consensus 394 gg~~~p~LYfEiR 406 (420)
T COG4942 394 GGQGRPALYFEIR 406 (420)
T ss_pred CCCCCcchhhhhh
Confidence 5789999998775
No 322
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.07 E-value=97 Score=29.44 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 801 DLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+.....+.|...+..|.+.++.|+.+.+..+.++.++++++.|
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666667666666665
No 323
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=36.04 E-value=2.4e+02 Score=28.35 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW 845 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~ 845 (1030)
.+|...|--+..++..+|+|+..+-..+.....+.+...++.+++.
T Consensus 44 ~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 44 EELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444555556666555555555555555555444444443
No 324
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.02 E-value=1.9e+02 Score=31.55 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAE 853 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~ 853 (1030)
.+.+.++.++...|+.+.+......++++.+++.|+....|+=|
T Consensus 44 r~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA 87 (225)
T COG1842 44 RQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 34444455556778888888888889999999988876554433
No 325
>PTZ00464 SNF-7-like protein; Provisional
Probab=36.01 E-value=1e+02 Score=33.42 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=17.8
Q ss_pred HHhHhHHHHHHHHHH---HHHHhhhhcchhh
Q 001683 853 EKCKAAKEIIKALAV---RLHTLSEKISAAK 880 (1030)
Q Consensus 853 ~k~kaake~ik~l~~---qlk~~~e~lp~~~ 880 (1030)
...+..++|+++|.. .||.+-..+..+.
T Consensus 95 e~a~~~~~vv~amk~g~kaLK~~~k~i~id~ 125 (211)
T PTZ00464 95 ESVKDTKVQVDAMKQAAKTLKKQFKKLNVDK 125 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 344555777777765 6777766666553
No 326
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=35.89 E-value=10 Score=31.56 Aligned_cols=30 Identities=33% Similarity=0.872 Sum_probs=17.5
Q ss_pred Ccccccccccc------ccccccccCCceeeccCCC
Q 001683 617 CSQCRMPFGFR------RKKHNCYNCGLHFCSACST 646 (1030)
Q Consensus 617 C~~C~~~F~f~------rrrHhC~~CG~vfC~~Css 646 (1030)
|.+|..+|.-. ..+..|..|+..||..|=-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~ 37 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDV 37 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcCh
Confidence 67788887654 3568899999999999843
No 327
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=35.88 E-value=34 Score=44.57 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=43.4
Q ss_pred ccccCCCCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhhcc
Q 001683 608 SISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQKI 675 (1030)
Q Consensus 608 wv~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~~~ 675 (1030)
|+.+.-...|+.|...|.|..++|||+ |.++ +.+...+..|+|..|...+...
T Consensus 651 w~aDg~aPng~la~t~~~~~~e~~hsr--~~ls-------------~~~~s~~~~~~~n~t~s~~rn~ 703 (1287)
T KOG1841|consen 651 WFADGIAPNGELAETRFTFTGERHHSR--GKLS-------------LLYSSRKEARPCNITHSVLRNV 703 (1287)
T ss_pred eccCCcCCCceecccceeeeccccccc--cccc-------------ccccccccCCCCcccCccchhh
Confidence 677777888999999999999999999 6554 3345678899999999988663
No 328
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.84 E-value=3.4e+02 Score=35.10 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001683 793 PIASTVEKDLSESNKMLNEEVQRLRDQARNLE 824 (1030)
Q Consensus 793 ~~~~~~~~~~~~~~~~l~~ev~~l~~q~~~~~ 824 (1030)
||..+-.|.....-+.|.+||.+|++|.++++
T Consensus 322 ~~~~sqkd~~~~~~~~~~~e~~~~~~~l~~~~ 353 (980)
T KOG0980|consen 322 PPNASQKDPRELQIEQLSREVAQLKAQLENLK 353 (980)
T ss_pred CcccccCChhhHHHHHHHHHHHHHhhhhhhHH
Confidence 55444457788888888999999988876443
No 329
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.76 E-value=1.7e+02 Score=38.46 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=50.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk 870 (1030)
.+++..-..-..+||....++++.|+.+.+..+.+.|+.......-..-+..|..|.-++++.+|.-.+.++
T Consensus 736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~ 807 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLR 807 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 566666665666777777777777777777777777777777766666677777777777777775544333
No 330
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.35 E-value=1.4e+02 Score=34.45 Aligned_cols=74 Identities=16% Similarity=0.321 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH---HHHHHHHHHHHhHh-----HHHHHHHHHHHHHHhhhhcch
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE---AWSLAREEAEKCKA-----AKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e---a~~~a~ee~~k~ka-----ake~ik~l~~qlk~~~e~lp~ 878 (1030)
+-|.+|.++|++-.+..++|+|....-...|.+.+.- -+.-..+...+|++ .++.|+.|..++|+....+-.
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~D 86 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFD 86 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHH
Confidence 3567777777777777777776665544444333321 11222233334432 455666666666666555554
Q ss_pred hh
Q 001683 879 AK 880 (1030)
Q Consensus 879 ~~ 880 (1030)
..
T Consensus 87 mE 88 (330)
T PF07851_consen 87 ME 88 (330)
T ss_pred HH
Confidence 43
No 331
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=35.35 E-value=7.2e+02 Score=28.30 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=11.6
Q ss_pred eEEEeCCCeEEEEeC
Q 001683 496 TVGLTGLGKVYTMGS 510 (1030)
Q Consensus 496 tlaLt~dG~Vy~wG~ 510 (1030)
..+..-+|+||++|.
T Consensus 315 ~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 315 GVSVSWNNGVLLIGG 329 (346)
T ss_pred eEEEEcCCEEEEEec
Confidence 345677899999994
No 332
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.10 E-value=2.4e+02 Score=31.22 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhH
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAA 858 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaa 858 (1030)
+.+-+++.+++.....++.+.++...||.+++.++++|-...++|-++-+--
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~ 210 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERWKQN 210 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777678889999999999999988888777765543
No 333
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=35.01 E-value=78 Score=25.40 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWS 846 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~ 846 (1030)
|.++|..+|.+...+..+....+-++-++.+++++-+.
T Consensus 2 L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~LD~lI~ 39 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKKGLTDPEVLELSQELDKLIN 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 78999999999999999889999999999999987553
No 334
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.90 E-value=1.3e+02 Score=37.25 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=7.3
Q ss_pred hHhHHHHHHHHHHHHH
Q 001683 855 CKAAKEIIKALAVRLH 870 (1030)
Q Consensus 855 ~kaake~ik~l~~qlk 870 (1030)
-+++++.|+...++||
T Consensus 242 l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 242 LQNDKKQLKADLAELK 257 (555)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3444444444444444
No 335
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.74 E-value=1.6e+02 Score=40.18 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~ 835 (1030)
|.+++..+..++..++.+.+..+.+|+
T Consensus 605 L~~~l~~~~~~l~~~~~~~~~~e~~l~ 631 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAEERQEELEKQLK 631 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 336
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.71 E-value=1.1e+02 Score=38.63 Aligned_cols=62 Identities=23% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
-|++|.+-|..++..|.+|.+--+..|+.-+..+++..-- |.-.---|+.|.++|||+.++|
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q-------~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQ-------RELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555544443333333333333322211 1111223777888888877764
No 337
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=34.65 E-value=1.8e+02 Score=30.59 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcch
Q 001683 814 QRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 814 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~ 878 (1030)
+.|.+|...+.|+.....+.+++.++-.+++=..+-|=+-|..++|+++++|..+|--+-|--|.
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpq 148 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQ 148 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 34556666666665555556666665555555555555566777888888887777655555444
No 338
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.54 E-value=2.2e+02 Score=36.79 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
.|.+|+.+|.++.++|+.....-..+|+.++.+++|+-...++=-++...+++-=..+..||+.|
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~ 657 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM 657 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444444444444444444444444444444444333333344443
No 339
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.51 E-value=3.2e+02 Score=26.78 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+..+.++|+.|+..+.++.++.+.++.+++.-++|
T Consensus 12 ~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~E 46 (121)
T PRK09343 12 QLAQLQQLQQQLERLLQQKSQIDLELREINKALEE 46 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777777777777777766655553
No 340
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=34.49 E-value=7.9e+02 Score=29.11 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=37.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHhHHHHHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQ---KVQECQQKIEEAWSL 847 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~---~~~~~~~~~~ea~~~ 847 (1030)
|..+.+||..-.-.||-|+.||++-..|.+-.|.+.+ ||+.+=-+++|-...
T Consensus 124 KDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrk 178 (558)
T PF15358_consen 124 KDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRK 178 (558)
T ss_pred ccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 6678889988888999999999988777766665544 455555566654443
No 341
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=34.45 E-value=70 Score=30.97 Aligned_cols=37 Identities=11% Similarity=0.333 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCccceeecCCHHHHHHHHHHHHHHHhc
Q 001683 45 QSFSIIYANGERSLDLICKDKVQAESWFLGLRAAISS 81 (1030)
Q Consensus 45 ~~Fsii~~~~~~sLdLv~~~~~ea~~W~~GL~~li~~ 81 (1030)
.+|-+--+-..+-+.|=|.|+.|-+.|+.|++.|+..
T Consensus 69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 5555555556888999999999999999999999975
No 342
>PRK04325 hypothetical protein; Provisional
Probab=34.39 E-value=2.7e+02 Score=24.95 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhhc
Q 001683 862 IKALAVRLHTLSEKI 876 (1030)
Q Consensus 862 ik~l~~qlk~~~e~l 876 (1030)
++.|+.||+++....
T Consensus 46 l~~L~~rl~~~~~~~ 60 (74)
T PRK04325 46 LRLLYQQMRDANPDA 60 (74)
T ss_pred HHHHHHHHHHhcccc
Confidence 666666777765443
No 343
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.37 E-value=2.4e+02 Score=27.06 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQEC--QQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~--~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
..++.+|++.+....++....|.+++-. ++.+.+=-..-+|=..+.++-.+-|+.++.|+.=|-|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666555544 33333222222222333455555567776666655443
No 344
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.35 E-value=2.2 Score=48.90 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=51.9
Q ss_pred cccccCCCCCCcccccccccccccccccc--CCceeeccCCCCccccccCCCCCCCCcccChhhHHhhhc
Q 001683 607 KSISVGDQSSCSQCRMPFGFRRKKHNCYN--CGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQK 674 (1030)
Q Consensus 607 kwv~~~d~s~C~~C~~~F~f~rrrHhC~~--CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~~ 674 (1030)
.|-++.+...|..|...|.-.+-..+|.. |+.+||-.|+. ...+.+ ....|..||.-|+..+..
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~K--atvp~l--~~e~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLK--ATVPSL--PNERPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHH--hhcccc--cccchHHHHHHHHHHhhh
Confidence 47778888899999999987777888887 99999999985 444555 335899999999998754
No 345
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=34.27 E-value=72 Score=25.98 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Q 001683 815 RLRDQARNLEKQCQIGNQKVQEC 837 (1030)
Q Consensus 815 ~l~~q~~~~~~~~~~~~~~~~~~ 837 (1030)
-||.||+.|+.|.+.+..-+-++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~y 25 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554444443333333
No 346
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=34.08 E-value=1.6e+02 Score=30.66 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=41.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH------------------HHHHHHHHhhh--------------hHHHHHHHHhHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQ------------------ARNLEKQCQIG--------------NQKVQECQQKIEE 843 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q------------------~~~~~~~~~~~--------------~~~~~~~~~~~~e 843 (1030)
+....++|+.|+.++-.|..|++| |..++.+.+.. +.+.....+.++|
T Consensus 26 ~~~~s~fk~~~~~~~~~l~~lpe~~p~IDwa~Yrk~va~a~~VD~~ek~y~slk~v~~~~~ky~~~vda~~k~~~~~~ke 105 (172)
T KOG3366|consen 26 AAEFSSFKSRNDEAVSRLLTLPEQPPTIDWAYYRKVVANAGLVDKYEKKYDSLKPVPVDEDKYLKEVDAEEKAAVKEIKE 105 (172)
T ss_pred HHHHHHHHHhhHHHHHHHHhcccCCCccCHHHHHHHhhhhHHHHHHHHHHHhccccCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 444566777777776666666654 34444444443 3444444444444
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchh
Q 001683 844 AWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 844 a~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~ 879 (1030)
...++..| |.-|+.+|..|..-.|-+
T Consensus 106 ~~~~s~~~----------iq~l~k~le~v~~~~P~d 131 (172)
T KOG3366|consen 106 YESLSKKR----------IQELEKELEKVKSARPFD 131 (172)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHhcCCcc
Confidence 44333332 677777787777777755
No 347
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.99 E-value=3.4e+02 Score=26.51 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHH------------------------------------
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGN---QKVQECQQ------------------------------------ 839 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~---~~~~~~~~------------------------------------ 839 (1030)
.+.|....+.|.+|+..|++|...|.++++..+ ..|....+
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Q ss_pred ---hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 840 ---KIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 840 ---~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
.++||..+..+ |.+..++-++.|..++..+.+.+
T Consensus 81 vE~~~~eA~~~l~~---r~~~l~~~~~~l~~~l~~l~~~~ 117 (129)
T cd00584 81 VEKDLEEAIEFLDK---KIEELTKQIEKLQKELAKLKDQI 117 (129)
T ss_pred EEecHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 348
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.95 E-value=1.6e+02 Score=32.41 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREE 851 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee 851 (1030)
|..|+.+|+.+++.|+.+...++.++-...+.++++++-+.++
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666654
No 349
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.93 E-value=3.7e+02 Score=31.93 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001683 810 NEEVQRLRDQARNLEKQCQ 828 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~ 828 (1030)
.+|+..+++....|+.+.+
T Consensus 218 ~~el~eik~~~~~L~~~~e 236 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIE 236 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 350
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=33.87 E-value=1.9e+02 Score=38.77 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=3.0
Q ss_pred EEEEEc
Q 001683 47 FSIIYA 52 (1030)
Q Consensus 47 Fsii~~ 52 (1030)
|.+|+|
T Consensus 25 ~~~i~G 30 (1179)
T TIGR02168 25 ITGIVG 30 (1179)
T ss_pred cEEEEC
Confidence 455554
No 351
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=33.82 E-value=3.2e+02 Score=25.83 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHH---HHHHHHH-HHHHHHHhhhh---HHHHHHHHhHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHHH
Q 001683 800 KDLSESNKMLNEEV---QRLRDQA-RNLEKQCQIGN---QKVQECQQKIEEAWSLAREEAEKCKAAK-EIIKALAVRLHT 871 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev---~~l~~q~-~~~~~~~~~~~---~~~~~~~~~~~ea~~~a~ee~~k~kaak-e~ik~l~~qlk~ 871 (1030)
++|...--.|+..+ +++|++| +-|.++.+.-. +.+.++..-+-+-.+-...|++|-=++- --+|.|..|||.
T Consensus 12 ~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKn 91 (107)
T PRK15365 12 RDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQ 91 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555444 4445577 56666554322 1222333333344444555665543332 236888889999
Q ss_pred hhhhcchhh
Q 001683 872 LSEKISAAK 880 (1030)
Q Consensus 872 ~~e~lp~~~ 880 (1030)
|-..-|++.
T Consensus 92 lnt~~~~~~ 100 (107)
T PRK15365 92 LNAQAPVEI 100 (107)
T ss_pred cCCCCceeC
Confidence 887777653
No 352
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=33.79 E-value=40 Score=36.86 Aligned_cols=34 Identities=21% Similarity=0.535 Sum_probs=25.0
Q ss_pred ccccCCCCCCcccccccc-------ccccccccccCCceee
Q 001683 608 SISVGDQSSCSQCRMPFG-------FRRKKHNCYNCGLHFC 641 (1030)
Q Consensus 608 wv~~~d~s~C~~C~~~F~-------f~rrrHhC~~CG~vfC 641 (1030)
+..-++.+.|..|...|. |+-...||.+|+..|-
T Consensus 126 vp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~ 166 (278)
T PF15135_consen 126 VPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFR 166 (278)
T ss_pred cCcccccccccccccccCCCccccccceeeeecccccccch
Confidence 355578899999988875 3333568999988864
No 353
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.74 E-value=1.4e+02 Score=26.82 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 813 VQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 813 v~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
..+|.+.|..+-..+.....|+++++.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 354
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.60 E-value=1.4e+02 Score=33.15 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcc
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKIS 877 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp 877 (1030)
+.+|+..+++++++|+.+-+.+..-+.+.+ +++|.+.+-.| -....+=|+++..|++.|.++.-
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~----L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERE----LSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666777777777766555555444333 66665544333 22344448999999999988754
No 355
>PRK14160 heat shock protein GrpE; Provisional
Probab=33.57 E-value=2.1e+02 Score=30.95 Aligned_cols=65 Identities=11% Similarity=0.206 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh-cchh
Q 001683 813 VQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK-ISAA 879 (1030)
Q Consensus 813 v~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~-lp~~ 879 (1030)
+..|+.++..|+++.+.++.++..++.++ .-+.|--|--|.+++||.-+....-...++.. ||+-
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~--lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVl 121 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRL--LRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVL 121 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34556666666666666666666554444 22345556778888888888777766666666 4443
No 356
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=33.51 E-value=2.9e+02 Score=28.40 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH---HHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE---EAWSLAREEAEKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~---ea~~~a~ee~~k~kaake~ik~l~~qlk 870 (1030)
..+|+.+++.||..|+.+-..++..+....++++ +++.-|..+...|.-++|=|.-|..+..
T Consensus 65 ~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~~ 129 (152)
T PF07321_consen 65 SLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQEQ 129 (152)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544444443 3344455566667777776777766443
No 357
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.43 E-value=1.7e+02 Score=33.94 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 819 QARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 819 q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
||..|+.+++.+..+|++.++.++
T Consensus 16 ~V~~m~~~L~~~~~~L~~k~~e~e 39 (344)
T PF12777_consen 16 QVEEMQEELEEKQPELEEKQKEAE 39 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333
No 358
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=33.38 E-value=2.8e+02 Score=29.95 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=39.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIG----NQKVQECQQKIEEAWSLAREEAEKCKA 857 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~ea~~~a~ee~~k~ka 857 (1030)
+.++..+++-.+.|.+.+..+.+.|...+++.+.. +.+|+.....+.+...-+..|..+.+|
T Consensus 103 K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa 168 (207)
T PF05010_consen 103 KEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQA 168 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55567777777777777777777777666666544 355555555555555555555554444
No 359
>PRK11020 hypothetical protein; Provisional
Probab=33.33 E-value=1.3e+02 Score=29.15 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVR 868 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~q 868 (1030)
|.+|+++|...+..+++| .|.+..+.++++-...+.-|..|+.+
T Consensus 3 ~K~Eiq~L~drLD~~~~K----------------laaa~~rgd~~~i~qf~~E~~~l~k~ 46 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHK----------------LAAASLRGDAEKYAQFEKEKATLEAE 46 (118)
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 567777777766666555 33344444444444444445555553
No 360
>PRK10698 phage shock protein PspA; Provisional
Probab=33.23 E-value=2.4e+02 Score=30.65 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHH
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREE 851 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee 851 (1030)
.+.+.-++-+.|+++.+..+.++++..++++-|+.--.|+
T Consensus 46 alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~Ed 85 (222)
T PRK10698 46 TSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKED 85 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3344444567788888999999999999999888743333
No 361
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.17 E-value=2.6e+02 Score=31.02 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=48.7
Q ss_pred CCCCccccchhhHHHHHHHH---HHHHHHHHHH----HHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHH
Q 001683 791 FIPIASTVEKDLSESNKMLN---EEVQRLRDQA----RNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIK 863 (1030)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~l~---~ev~~l~~q~----~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik 863 (1030)
|-+.+....++++...++|+ ++..+.+.+. +.+..+....+.+|+.++.-++||....++=....++-+.-+.
T Consensus 144 f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~ 223 (264)
T PF06008_consen 144 FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLE 223 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667888999988763 2333334443 4456666777788888888888887776664444444444444
Q ss_pred HHHHHHHH
Q 001683 864 ALAVRLHT 871 (1030)
Q Consensus 864 ~l~~qlk~ 871 (1030)
.+..+..+
T Consensus 224 ~~~~k~~~ 231 (264)
T PF06008_consen 224 DLEKKKQE 231 (264)
T ss_pred HHHHHHHH
Confidence 44443333
No 362
>PLN02943 aminoacyl-tRNA ligase
Probab=33.16 E-value=68 Score=42.48 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHHHHH-------HHHHHHHHHhHhHHHHHHHHHHHHHHhhh
Q 001683 816 LRDQARNLEKQCQIGNQKVQECQQKIEEAW-------SLAREEAEKCKAAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 816 l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~-------~~a~ee~~k~kaake~ik~l~~qlk~~~e 874 (1030)
+.++++.|+++.+..+.||+++++++...- .+..+|-+|.+..++-|..|..+|+.+.+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~ 952 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444555555555554222 34556667777777777777777777654
No 363
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=32.77 E-value=2.7e+02 Score=30.03 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHhHH
Q 001683 808 MLNEEVQRLRDQARNLE-------KQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~-------~~~~~~~~~~~~~~~~~~ 842 (1030)
.+++++.++|++.+.|+ .|.+..+.||++++++.+
T Consensus 119 ~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~ 160 (216)
T cd07627 119 SAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRAS 160 (216)
T ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 44777888888777774 344455555554444433
No 364
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.77 E-value=1.5e+02 Score=26.73 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQEC 837 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~ 837 (1030)
-+..|+.+++.|++.|+.+-+.+..|+.++
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444443
No 365
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.69 E-value=3.6e+02 Score=29.01 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEA 852 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~ 852 (1030)
+|..+++.+.+.+..+ .+.+|.+.+++.++-+.-|++|+
T Consensus 94 ~~Ae~~k~eAe~~~~~---ye~~L~~Ar~eA~~Ii~~Ar~ea 132 (204)
T PRK09174 94 DQAARLKQEADAAVAA---YEQELAQARAKAHSIAQAAREAA 132 (204)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 34444444444444444444443
No 366
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=32.43 E-value=1.4e+02 Score=35.61 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=50.1
Q ss_pred chhhHHHHHHHHHHHHHHHHH---------HHHHHHHHhh-hhHHHHHHHHhHHHHHHHHHH--HHHHhHhHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQ---------ARNLEKQCQI-GNQKVQECQQKIEEAWSLARE--EAEKCKAAKEIIKALA 866 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q---------~~~~~~~~~~-~~~~~~~~~~~~~ea~~~a~e--e~~k~kaake~ik~l~ 866 (1030)
.+.+.+.++++.+|+.++... +..|+++++. .+.||+++-+|+.. -.-.+| |..=+..+|.++...+
T Consensus 315 ~~~~~~a~~ii~~~~~~f~~~~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~-~~~~~~~~~~~~~~~~~k~lh~p~ 393 (423)
T PRK00045 315 QEAAEKAEAIVEEEVAEFMEWLRSLEVVPTIRALREQAEEIREEELERALKKLGP-GEDEEEVLEKLARSLVNKLLHAPT 393 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhccC-CccHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888999999877653 5678888865 67889998888732 011111 2222466677777777
Q ss_pred HHHHHhhh
Q 001683 867 VRLHTLSE 874 (1030)
Q Consensus 867 ~qlk~~~e 874 (1030)
.+||+.++
T Consensus 394 ~~lr~~~~ 401 (423)
T PRK00045 394 VRLKEAAE 401 (423)
T ss_pred HHHHhhcc
Confidence 78888443
No 367
>PHA02562 46 endonuclease subunit; Provisional
Probab=32.38 E-value=2.5e+02 Score=34.54 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQK 840 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~ 840 (1030)
-+.+++.+|++|++.|+++.+..+..+...++.
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~ 210 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK 210 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344455555555555555544444333333333
No 368
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.33 E-value=1.8e+02 Score=36.42 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWS 846 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~ 846 (1030)
-.+|+..|+.|++.|..+++..+.++..++.++++...
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~ 363 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEE 363 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777766665443
No 369
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=32.29 E-value=45 Score=36.93 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHhHHHHHHHHHHHHHHhHhHHH
Q 001683 803 SESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQEC-QQKIEEAWSLAREEAEKCKAAKE 860 (1030)
Q Consensus 803 ~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~-~~~~~ea~~~a~ee~~k~kaake 860 (1030)
|+..+.+.||.++-+ .|.++ +++. +|..+||+..+.-|.++++|+++
T Consensus 96 krkek~~iee~e~~~----q~~e~-------~~~i~qq~~~ea~e~~~~~e~~~~A~~~ 143 (279)
T PF07271_consen 96 KRKEKRMIEEKEEHE----QLAEQ-------LGRISQQEETEAIEKTPSAEANAQAPEA 143 (279)
T ss_pred hhhHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHhhcCchhhhhcccccc
Confidence 344667777776622 22222 2211 33345665555666777777765
No 370
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.20 E-value=1.3e+02 Score=32.82 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=14.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNL 823 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~ 823 (1030)
+.+|..-|+.|.-|-..||++-++|
T Consensus 99 i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666655444
No 371
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.07 E-value=1.6e+02 Score=35.48 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=15.6
Q ss_pred hHhHHHHHHHHHHHHHHhhhhc
Q 001683 855 CKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 855 ~kaake~ik~l~~qlk~~~e~l 876 (1030)
..|+|+-=+-||++|+||-+|-
T Consensus 263 Lq~~~da~~ql~aE~~EleDky 284 (596)
T KOG4360|consen 263 LQAYKDAQRQLTAELEELEDKY 284 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 3456666677888888887663
No 372
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.02 E-value=2.5e+02 Score=35.74 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREE 851 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee 851 (1030)
..+....+...+++..|+.++..|++++...+.++.++.+.++|+|....+-
T Consensus 230 ~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 230 KPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566778888899999999999999999999999999988888775
No 373
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.98 E-value=53 Score=32.08 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHhHHHHHHHHHHHHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGN-------QKVQECQQKIEEAWSLAREEAEK 854 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~-------~~~~~~~~~~~ea~~~a~ee~~k 854 (1030)
+.+-..-+-|..|+..|+.+++.|..+..... ..|...++..++....|.+||.+
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~ 89 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEE 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 34444445556666666666665555544443 33334444555555555555443
No 374
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=31.86 E-value=2.8e+02 Score=32.48 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHH-HHHhHhHHHHHHHHHHHHHHhhh
Q 001683 814 QRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREE-AEKCKAAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 814 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee-~~k~kaake~ik~l~~qlk~~~e 874 (1030)
..+++++..++.+.+....+++..+.++.++..-...| ..+...+++-|+.+.++|..+.+
T Consensus 206 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 206 AEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333332222211 22334444444444444444333
No 375
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.86 E-value=1.4e+02 Score=38.16 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
.+.++....-|..|+++||.+++..++++...+.|+|.+.+
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888889999999999999999999999988875554
No 376
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.85 E-value=4.5e+02 Score=28.04 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLE 824 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~ 824 (1030)
+.+...|.-|..|+..|+-|.+++.
T Consensus 32 e~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 32 ETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554
No 377
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=31.84 E-value=2.1e+02 Score=32.52 Aligned_cols=24 Identities=46% Similarity=0.351 Sum_probs=16.1
Q ss_pred HHHhHHHHHHHHHHHHHHhHhHHH
Q 001683 837 CQQKIEEAWSLAREEAEKCKAAKE 860 (1030)
Q Consensus 837 ~~~~~~ea~~~a~ee~~k~kaake 860 (1030)
-+++.+++.+-|.+|++|.||+-|
T Consensus 145 ~kk~aE~a~aka~aEA~k~Ka~ae 168 (387)
T COG3064 145 QKKKAEAAKAKAAAEAAKLKAAAE 168 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455666666888888888665443
No 378
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.72 E-value=83 Score=27.74 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQ 838 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~ 838 (1030)
...+-+-||+.|.+.+.++..|+++++....+|+...
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 379
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.65 E-value=2.3e+02 Score=35.22 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=22.3
Q ss_pred HHhHhHHHHHHHHHH---HHHHhhhhcchhhhh
Q 001683 853 EKCKAAKEIIKALAV---RLHTLSEKISAAKEA 882 (1030)
Q Consensus 853 ~k~kaake~ik~l~~---qlk~~~e~lp~~~~~ 882 (1030)
.-.-+|+||+..|.. +|+++-+++|+=...
T Consensus 187 GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~ 219 (560)
T PF06160_consen 187 GDYLEAREILEKLKEETDELEEIMEDIPKLYKE 219 (560)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 346788999888766 677888888876544
No 380
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.65 E-value=2.8e+02 Score=33.14 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=18.4
Q ss_pred CCCCCccccccccccccccccccCCceeeccCCC
Q 001683 613 DQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACST 646 (1030)
Q Consensus 613 d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css 646 (1030)
+...|..|+..+... -|..||.+.|..=-.
T Consensus 227 e~~~c~~c~~~~~Lw----icliCg~vgcgrY~e 256 (493)
T KOG0804|consen 227 ESSLCLACGCTEDLW----ICLICGNVGCGRYKE 256 (493)
T ss_pred hhhhhhhhcccccEE----EEEEccceecccccc
Confidence 455666666655533 278888887755433
No 381
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.63 E-value=1.2e+02 Score=27.95 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW 845 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~ 845 (1030)
-|..+|+.|.++|..|.+.-......++..+.++..|-
T Consensus 28 qLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN 65 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRAN 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888877777777777766666554
No 382
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=31.56 E-value=70 Score=42.55 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=16.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHhhh
Q 001683 847 LAREEAEKCKAAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 847 ~a~ee~~k~kaake~ik~l~~qlk~~~e 874 (1030)
+..+|-+|...+++-|..|...|+++.+
T Consensus 965 vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 965 VRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666553
No 383
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=31.53 E-value=1.2e+02 Score=35.91 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
=+.++.-+.|.+++.+|+.+++.|+.+++... +.++|+++
T Consensus 238 l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~ 277 (406)
T PF02388_consen 238 LNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKE 277 (406)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHH
Confidence 34566666788888888888888888766555 44444444
No 384
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.50 E-value=97 Score=28.91 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 801 DLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+.....+.|..++..|.++++.|+.+.+..+.++++++.++.+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677777777777777777777777777777776654
No 385
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.49 E-value=1.8e+02 Score=34.66 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAE 853 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~ 853 (1030)
+.+|=+++.+|.+...+.-+....||+.-+..|+..++-+..++|
T Consensus 204 ~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 204 LLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333334444333334433333333333
No 386
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=31.48 E-value=1.8e+02 Score=31.05 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhH----------HHHHHHHHHHHHH
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAA----------KEIIKALAVRLHT 871 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaa----------ke~ik~l~~qlk~ 871 (1030)
||..|.-.+..|+++.+..+..+.-.++|++||---|.| ++++- -|.|+.+.+|||+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE---~er~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADE---SERGMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 387
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.33 E-value=72 Score=33.67 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+......+...+.+.+|..++..+++.|+++.+..+.+++..++|++.
T Consensus 139 kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 139 KQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=31.33 E-value=83 Score=23.46 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcEEEEEeCC-CeEEEEeeCCCEEEe
Q 001683 314 INVQSVSCGE-FQTCALTKSGEIYTW 338 (1030)
Q Consensus 314 ~~I~~Va~G~-~hslaLT~dG~VY~W 338 (1030)
..+++|++|. ....+++.+|+||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3789999999 888999999999964
No 389
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=31.28 E-value=4.2e+02 Score=26.97 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEA 852 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~ 852 (1030)
|..+++.|++.+.++ .+.+|+..+++.++-..-|.+|+
T Consensus 64 ~Ae~~~~ea~~~~~e---~e~~L~~A~~ea~~ii~~A~~~a 101 (156)
T CHL00118 64 KASEILAKANELTKQ---YEQELSKARKEAQLEITQSQKEA 101 (156)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 23334444444444444444433
No 390
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.27 E-value=2.1e+02 Score=30.57 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=21.3
Q ss_pred HHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 001683 823 LEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk 870 (1030)
|.++.+..+..++...++|++...|-.|||- +.+++.|..+++
T Consensus 122 l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk-----~~Ll~~le~e~~ 164 (201)
T PF12072_consen 122 LEEREEELEELIEEQQQELEEIAGLTAEEAK-----EILLEKLEEEAR 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHHHH
Confidence 4444444444444455566666666666543 344444444443
No 391
>PF15294 Leu_zip: Leucine zipper
Probab=31.23 E-value=1.5e+02 Score=33.42 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 001683 807 KMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAV 867 (1030)
Q Consensus 807 ~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ 867 (1030)
++|+.|+.+|+++.+.|+.+ -+.++.-...+.+|..|.+++ |+.|..
T Consensus 128 ~ll~kEi~rLq~EN~kLk~r-----------l~~le~~at~~l~Ek~kl~~~---L~~lq~ 174 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKER-----------LKSLEKQATSALDEKSKLEAQ---LKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH---HHHHHH
No 392
>PLN02678 seryl-tRNA synthetase
Probab=31.18 E-value=2e+02 Score=34.70 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh---HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcch
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQK---IEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISA 878 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~---~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~ 878 (1030)
|.+|-.+|+.+++.|+.+-.....+|.+.++. .++..+-+++=.++-++..+-++.|.++|.++.-+||-
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35666777777777777777777777543322 22333333333445677777788888999998888773
No 393
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=31.12 E-value=4.7e+02 Score=26.32 Aligned_cols=10 Identities=50% Similarity=0.322 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001683 843 EAWSLAREEA 852 (1030)
Q Consensus 843 ea~~~a~ee~ 852 (1030)
+.+.-|.+|+
T Consensus 89 ~~~~~a~~ea 98 (156)
T PRK05759 89 EAKAEAEAEA 98 (156)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 394
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.09 E-value=4.5e+02 Score=25.28 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLARE 850 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~e 850 (1030)
.++.+.+|+++.+.+.+..++++..+++++..+++.-.+..+
T Consensus 23 qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~ 64 (110)
T PF10828_consen 23 QSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEE 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888887777765444433
No 395
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=30.93 E-value=2.1e+02 Score=38.68 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
+.+|+..|++|++.+.++.+..+..++...++++
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELV 180 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 6677777777766555555554444444444444
No 396
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.91 E-value=1.4e+02 Score=35.69 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=35.1
Q ss_pred cceEeeeC-CeeEEE----EEeCCCC----ccceeEEE-eec-cccC---HHHHHHHHH---hccchhheecccc
Q 001683 961 LEYAEQYE-PGIYIT----FTTLPSG----QKGLKRVR-FSR-RRFT---EKAAERWWE---ENQVVVYQKYGIE 1018 (1030)
Q Consensus 961 ~~~~~~~e-~gv~~t----~~~~~~g----~~~~~r~~-f~~-~~f~---~~~~~~ww~---~n~~~~~~~~~~~ 1018 (1030)
.|++++.+ |.-|.- |+.-.|. +|.|-||. |.+ |+|. ..++..+.+ +|-..|.+...++
T Consensus 244 ~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLP 318 (429)
T COG0172 244 DEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELP 318 (429)
T ss_pred ccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 48999776 655543 3444555 68888885 877 7774 345555543 2455566665544
No 397
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.91 E-value=86 Score=27.65 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
.++.+++.|+..|+++.+.+..+.++++++++.-
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777777777777777776666553
No 398
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=30.90 E-value=4.3e+02 Score=27.05 Aligned_cols=7 Identities=0% Similarity=0.116 Sum_probs=3.1
Q ss_pred Hhhhhcc
Q 001683 871 TLSEKIS 877 (1030)
Q Consensus 871 ~~~e~lp 877 (1030)
++++|+-
T Consensus 134 ~~a~kil 140 (164)
T PRK14473 134 LTASRVL 140 (164)
T ss_pred HHHHHHH
Confidence 4445533
No 399
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=30.89 E-value=4.5e+02 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=12.1
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHH
Q 001683 830 GNQKVQECQQKIEEAWSLAREEAEK 854 (1030)
Q Consensus 830 ~~~~~~~~~~~~~ea~~~a~ee~~k 854 (1030)
.+.+|...+++..+...-|.+|+.+
T Consensus 61 ~~~~l~~a~~ea~~i~~~a~~ea~~ 85 (156)
T PRK05759 61 YEAQLAEARAEAAEIIEQAKKRAAQ 85 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555544445554444
No 400
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.89 E-value=1.6e+02 Score=25.29 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQC 827 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~ 827 (1030)
.|..|...|+.++..|++++
T Consensus 37 ~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 37 ELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 401
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.86 E-value=1.3e+02 Score=29.33 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Q 001683 816 LRDQARNLEKQCQIGNQKVQECQ 838 (1030)
Q Consensus 816 l~~q~~~~~~~~~~~~~~~~~~~ 838 (1030)
|..+++.|+++.+....++++++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~ 100 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLK 100 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333333
No 402
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.74 E-value=86 Score=32.73 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001683 806 NKMLNEEVQRLRDQARNLEKQ 826 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~ 826 (1030)
++.-.+|+..||.+|++|+++
T Consensus 101 ee~~~~e~~elr~~~~~l~~~ 121 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENA 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777763
No 403
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=30.74 E-value=4.6e+02 Score=27.17 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=27.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKC 855 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~ 855 (1030)
.+-+.+-.+.+..++......-+...+..+..+.+|+..++++++-..-|.+|+.+.
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~ 100 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKL 100 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333332223333333355566666666666666666666554
No 404
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.52 E-value=1.1e+02 Score=31.46 Aligned_cols=44 Identities=11% Similarity=0.290 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------HHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 801 DLSESNKMLNEEVQRLRDQA------------RNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~------------~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
...+...-|..|+.+|+.|. ..|++|.+..+.||+++++....+
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 405
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.51 E-value=2.8e+02 Score=34.10 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKC 855 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~ 855 (1030)
+-.+++.+.+.+.+.+++.+++.|+.+.+..+.++...++.+++.-.....+.+..
T Consensus 163 ~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l 218 (562)
T PHA02562 163 SVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARK 218 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34556666777777777788888888877777777766655555544433333333
No 406
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=30.50 E-value=2e+02 Score=24.61 Aligned_cols=49 Identities=12% Similarity=0.282 Sum_probs=40.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchh
Q 001683 831 NQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 831 ~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~ 879 (1030)
...|+.+.+.+.|+..+|.+=...-+.=.|.|+..-..|.+|...||..
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s 55 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKS 55 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3467788888888888888888888888888888888888888888864
No 407
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=30.47 E-value=76 Score=30.24 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhh----hhHHHHHHHHhHH
Q 001683 818 DQARNLEKQCQI----GNQKVQECQQKIE 842 (1030)
Q Consensus 818 ~q~~~~~~~~~~----~~~~~~~~~~~~~ 842 (1030)
+|++.|+++.+. +..+|++.+++|+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477777777777 8888888887764
No 408
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=30.40 E-value=5.8e+02 Score=27.00 Aligned_cols=78 Identities=28% Similarity=0.331 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHhHHHHHHHHHH--HHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 801 DLSESNKMLNEEVQRLRDQARNLEK---QCQIGNQKVQECQQKIEEAWSLARE--EAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~~~~~~---~~~~~~~~~~~~~~~~~ea~~~a~e--e~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
.|..-.+.|-+|+.+|+-.-..|+. +...-.+++++..++....+..++- |-+|-..|-++-..|=+|-=+||||
T Consensus 42 ~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~LwdeSi~LAEk 121 (228)
T PRK06800 42 ELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQSFQLAEK 121 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777763333333 3333334444444444444444433 4455667888888888888888888
Q ss_pred cch
Q 001683 876 ISA 878 (1030)
Q Consensus 876 lp~ 878 (1030)
+--
T Consensus 122 IV~ 124 (228)
T PRK06800 122 IVN 124 (228)
T ss_pred HHH
Confidence 643
No 409
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.35 E-value=1.4e+02 Score=28.75 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH
Q 001683 804 ESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW 845 (1030)
Q Consensus 804 ~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~ 845 (1030)
..-.-|+..+..+...++.|+++.+..+.++.+.+++++++.
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333446666666677777777777777777888888877765
No 410
>PRK00295 hypothetical protein; Provisional
Probab=30.34 E-value=1.2e+02 Score=26.73 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhh
Q 001683 862 IKALAVRLHTLSEK 875 (1030)
Q Consensus 862 ik~l~~qlk~~~e~ 875 (1030)
++.|+.||+++...
T Consensus 42 l~~L~~rl~~~~~~ 55 (68)
T PRK00295 42 MAALIKRQEEMVGQ 55 (68)
T ss_pred HHHHHHHHHHhhcc
Confidence 67788888888643
No 411
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=30.33 E-value=80 Score=29.89 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+||.+++++ ..|++|||.+..--+++++.+.+
T Consensus 65 ~NerLqqa~---~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 65 MNERLQQAR---DQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 466666666 56788888888777777776654
No 412
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.32 E-value=1.6e+02 Score=35.58 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=15.2
Q ss_pred HHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 852 AEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 852 ~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
.+|-+.=.+-|+.|.+|++.+..+
T Consensus 103 e~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 334444455588888888766665
No 413
>PRK00736 hypothetical protein; Provisional
Probab=30.28 E-value=1.1e+02 Score=26.99 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhhc
Q 001683 862 IKALAVRLHTLSEKI 876 (1030)
Q Consensus 862 ik~l~~qlk~~~e~l 876 (1030)
++.|+.||+++.+..
T Consensus 42 l~~L~~rl~~~~~~~ 56 (68)
T PRK00736 42 LDALTERFLSLEEQA 56 (68)
T ss_pred HHHHHHHHHHhcccc
Confidence 677888888876554
No 414
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=30.16 E-value=4.6e+02 Score=26.98 Aligned_cols=20 Identities=40% Similarity=0.348 Sum_probs=10.2
Q ss_pred HHHHhHHHHHHHHHHHHHHh
Q 001683 836 ECQQKIEEAWSLAREEAEKC 855 (1030)
Q Consensus 836 ~~~~~~~ea~~~a~ee~~k~ 855 (1030)
+.++..+|+..-|.+|+.+-
T Consensus 84 ~a~~~~~e~~~~a~~e~~r~ 103 (161)
T COG0711 84 EAEQIAEEIKAEAEEELERI 103 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555544
No 415
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=30.07 E-value=1.2e+02 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
|.+...+|+.|++.|.++....+..+.++++
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555555555433
No 416
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=29.99 E-value=1.3e+02 Score=36.14 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=39.3
Q ss_pred HHHHHHHHHH---HHHHHH----HHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHH
Q 001683 809 LNEEVQRLRD---QARNLE----KQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIK 863 (1030)
Q Consensus 809 l~~ev~~l~~---q~~~~~----~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik 863 (1030)
+.+||++.-. |++++- ++-+.+...|+++++|-+||+.+|.|=-+|.+.+.++-.
T Consensus 14 vdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn 75 (436)
T PF01093_consen 14 VDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCN 75 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655433 444444 444445566779999999999999998899999888654
No 417
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=29.86 E-value=1.9e+02 Score=31.31 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHh
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKC 855 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~ 855 (1030)
.|..++.+++.+|..|+.+.+..+.+|+..+. ++.+.+|+..+++.
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~--k~~~l~ar~~~A~a 148 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARA--RQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 44455555555555555555555555554432 33445566655544
No 418
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.81 E-value=44 Score=40.34 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
|.|+|.+|+.|+++|++|.+.++.+|.+.++
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 3446677777777777666655555555555
No 419
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.57 E-value=1.9e+02 Score=31.39 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhH
Q 001683 806 NKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKI 841 (1030)
Q Consensus 806 ~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 841 (1030)
|+.++.|..+|++++++...+.+..+.+....+||.
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333333
No 420
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.48 E-value=1e+02 Score=34.33 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhhHHHH
Q 001683 819 QARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 819 q~~~~~~~~~~~~~~~~ 835 (1030)
+|..|+=+.|.+.-+|+
T Consensus 69 ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 69 DIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 33333333333333333
No 421
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=29.47 E-value=52 Score=28.08 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQ 838 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~ 838 (1030)
.+||.-|++|+..|..+-.+.+.|=..++
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777666666554444
No 422
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.46 E-value=7.2 Score=40.46 Aligned_cols=30 Identities=37% Similarity=0.864 Sum_probs=22.8
Q ss_pred ccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhh
Q 001683 634 YNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQ 673 (1030)
Q Consensus 634 ~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~ 673 (1030)
-+||++||..|.. .++ +..++|..|..++.
T Consensus 149 TkCGHvFC~~Cik-----~al-----k~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 149 TKCGHVFCSQCIK-----DAL-----KNTNKCPTCRKKIT 178 (187)
T ss_pred cccchhHHHHHHH-----HHH-----HhCCCCCCcccccc
Confidence 4899999999985 223 56678999987664
No 423
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=29.46 E-value=90 Score=23.27 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.3
Q ss_pred cEEEEEeCC-CceEEEeeCCcEEEE
Q 001683 370 RVSKVACGE-WHTAIVSTSGQLFTY 393 (1030)
Q Consensus 370 ~Iv~IacG~-~Hs~aLT~dG~Vy~w 393 (1030)
.+++|++|. ....+++.+|++|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 888899999999864
No 424
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=29.44 E-value=3.1e+02 Score=33.78 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 001683 804 ESNKMLNEEVQRLRDQARNLEKQCQIGNQK 833 (1030)
Q Consensus 804 ~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~ 833 (1030)
.-++.|.+++.+|+-|+...-.+..++.+.
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL 443 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQL 443 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554444444444333
No 425
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=29.33 E-value=1.9e+02 Score=35.65 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=17.5
Q ss_pred HHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 001683 821 RNLEKQCQIGNQKVQECQQKIEEAWSLAREEAE 853 (1030)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~ 853 (1030)
+.|.++-+.++..+++..++|++...|-.|||-
T Consensus 118 ~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak 150 (514)
T TIGR03319 118 KNLDEKEEELEELIAEQREELERISGLTQEEAK 150 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 333333334444444555566666666666654
No 426
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=29.19 E-value=2.6e+02 Score=38.01 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=25.5
Q ss_pred cccccCCCC--CCCCCeEEEEEc-CC-CccceeecCCHHHHHHHHHHHHH
Q 001683 32 VNFQCQPQP--DRKQQSFSIIYA-NG-ERSLDLICKDKVQAESWFLGLRA 77 (1030)
Q Consensus 32 ~~f~~~~~~--~~~~~~Fsii~~-~~-~~sLdLv~~~~~ea~~W~~GL~~ 77 (1030)
.+|++|..+ .+-...|+.|-| || .+| +--+|=.||.|.+-
T Consensus 9 ~gFKSF~~~~~i~f~~~~t~IvGPNGSGKS------NI~DAi~fVLG~~s 52 (1163)
T COG1196 9 KGFKSFADPTEINFSPGFTAIVGPNGSGKS------NIVDAIRFVLGEQS 52 (1163)
T ss_pred ECcccCCCCeeeecCCCCeEEECCCCCchH------HHHHHHHHHhCcch
Confidence 357777664 555677888886 22 333 45677788888663
No 427
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=29.17 E-value=3.7e+02 Score=27.06 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhh
Q 001683 814 QRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 814 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e 874 (1030)
-.||++++.|. . .+|+....|+.-++.==+||.++-++++.-.+...+++++|++
T Consensus 12 R~lra~~re~~--~----e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~ 66 (134)
T PRK10328 12 RTLRAMAREFS--I----DVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMK 66 (134)
T ss_pred HHHHHHHHhCC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555442 1 2344444444444444444444444444444444444444443
No 428
>PRK00846 hypothetical protein; Provisional
Probab=29.15 E-value=2.8e+02 Score=25.25 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=29.1
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchh
Q 001683 822 NLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~ 879 (1030)
.++++...+|.+|---...+++=-....+ --..|.-|+.||+-|.+||-.-
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~-------qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALAD-------ARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666665555554444443333322 3345777777777777777654
No 429
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=28.94 E-value=4.1e+02 Score=29.48 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhh
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e 874 (1030)
+.+.+-..-|.+|+..|+.|+.....+.+.......++.++ |.+=..+.+....-|+.|..++..+.+
T Consensus 48 ~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~-------a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 48 DPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQR-------AQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333344444444444444444444444443333333333 333233333344445555555555544
No 430
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=28.89 E-value=4.2e+02 Score=30.28 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH------------------HHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKV------------------QECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRL 869 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~------------------~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~ql 869 (1030)
-++.+|..|+.+|++|+.+.+....++ .+..+++.++..=-..|..|...+-+-.+.+..+|
T Consensus 85 ~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l 164 (301)
T PF06120_consen 85 AQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATL 164 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777776666654322221 22333333333333334445555555555555566
Q ss_pred HHhhhhcc
Q 001683 870 HTLSEKIS 877 (1030)
Q Consensus 870 k~~~e~lp 877 (1030)
.++.++.=
T Consensus 165 ~~~~~~~~ 172 (301)
T PF06120_consen 165 NDLTEQRI 172 (301)
T ss_pred HHHHHHHH
Confidence 65555544
No 431
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=28.76 E-value=4.6e+02 Score=27.18 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 001683 843 EAWSLAREEAE 853 (1030)
Q Consensus 843 ea~~~a~ee~~ 853 (1030)
+.+.-|.+|++
T Consensus 103 ~~~~~A~~ea~ 113 (173)
T PRK13453 103 QIIHEANVRAN 113 (173)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 432
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=28.74 E-value=3.5e+02 Score=34.19 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 805 SNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 805 ~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
-.+.|.+||.+||+++..|.++.+..+.|+..-...++-
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q 118 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQ 118 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999998888888888777777654444443
No 433
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.65 E-value=1.3e+02 Score=31.76 Aligned_cols=44 Identities=16% Similarity=0.383 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 800 KDLSESNKMLNEEVQRL------RDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l------~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
..|-..++.|.+-|..| +.++..|+++.+.++.+|..+.++|.+
T Consensus 5 ~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 5 EDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444433 345555555555555555555555544
No 434
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=28.63 E-value=5.5e+02 Score=26.55 Aligned_cols=12 Identities=8% Similarity=0.219 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 001683 842 EEAWSLAREEAE 853 (1030)
Q Consensus 842 ~ea~~~a~ee~~ 853 (1030)
++.+.-|.+|++
T Consensus 106 ~~ii~~A~~ea~ 117 (167)
T PRK08475 106 QKIEKQTKDDIE 117 (167)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 435
>PRK10780 periplasmic chaperone; Provisional
Probab=28.56 E-value=4.1e+02 Score=27.36 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001683 803 SESNKMLNEEVQRLRDQAR 821 (1030)
Q Consensus 803 ~~~~~~l~~ev~~l~~q~~ 821 (1030)
++.++-|..|...++.+++
T Consensus 42 k~~~~~le~~~~~~q~el~ 60 (165)
T PRK10780 42 TGVSKQLENEFKGRASELQ 60 (165)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333
No 436
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=28.48 E-value=11 Score=42.50 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=15.6
Q ss_pred eeccCCCCccccccCC-CCCCCCcc--cChhhHHhhhccC
Q 001683 640 FCSACSTKKIINASLT-PNKGKPSR--VCDTCYNHLQKIT 676 (1030)
Q Consensus 640 fC~~Css~k~~~~~l~-p~~~~p~R--VC~~C~~~l~~~~ 676 (1030)
-|..|.+.+....... ......+| ||+.|..-++.+.
T Consensus 213 ~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~vd 252 (290)
T PF04216_consen 213 KCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTVD 252 (290)
T ss_dssp S-TTT---SS-EEE--------SEEEEEETTTTEEEEEEE
T ss_pred CCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHHh
Confidence 4555544433222222 22333455 5999999987655
No 437
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=28.47 E-value=5.1e+02 Score=26.31 Aligned_cols=22 Identities=32% Similarity=0.073 Sum_probs=9.5
Q ss_pred hHhHHHHHHHHHHHHHHhhhhc
Q 001683 855 CKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 855 ~kaake~ik~l~~qlk~~~e~l 876 (1030)
.+|.+++-+.++..--++++|+
T Consensus 115 ~~a~~~l~~ei~~lA~~~a~ki 136 (159)
T PRK13461 115 EKAEYEIKNQAVDLAVLLSSKA 136 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444333444444555554
No 438
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.45 E-value=1.5e+02 Score=33.19 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
.|.++-..|.+++..|+.+...|+.+|++..+
T Consensus 184 ~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 184 ALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555555555555555555543
No 439
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=28.45 E-value=4.4e+02 Score=30.15 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=41.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHhHH-HHHHHHHHHHHH----------hHhHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQ----ECQQKIE-EAWSLAREEAEK----------CKAAKEIIK 863 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~----~~~~~~~-ea~~~a~ee~~k----------~kaake~ik 863 (1030)
.+.|..-|--|.++...|-.|.+.+.+..+.+.+.++ .-+.|++ -+...|..|.++ ---||+.|+
T Consensus 132 n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e 211 (391)
T KOG1850|consen 132 NDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLE 211 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4667777777888888888887777777777766665 1122222 333344444433 334666677
Q ss_pred HHHH
Q 001683 864 ALAV 867 (1030)
Q Consensus 864 ~l~~ 867 (1030)
.++.
T Consensus 212 ~~~~ 215 (391)
T KOG1850|consen 212 EMKQ 215 (391)
T ss_pred HHHH
Confidence 7665
No 440
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=28.45 E-value=83 Score=27.11 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=15.8
Q ss_pred CCCCCc-----cccchhhHHHHHHHHHH
Q 001683 790 NFIPIA-----STVEKDLSESNKMLNEE 812 (1030)
Q Consensus 790 ~~~~~~-----~~~~~~~~~~~~~l~~e 812 (1030)
+.||+. +.....+++=|++|.+.
T Consensus 8 ~vip~~~~~~W~~L~~~l~rY~~vL~~R 35 (60)
T PF14775_consen 8 NVIPDEKIRLWDALENFLKRYNKVLLDR 35 (60)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345665 55678889999888543
No 441
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.43 E-value=94 Score=29.30 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCccc--eeecCCHHHHHHHHHHHHHH
Q 001683 44 QQSFSIIYANGERSL--DLICKDKVQAESWFLGLRAA 78 (1030)
Q Consensus 44 ~~~Fsii~~~~~~sL--dLv~~~~~ea~~W~~GL~~l 78 (1030)
..+|.|.+-+-..++ -+.|.+++|.+.||..|+.+
T Consensus 65 ~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 65 PNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred cceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 368999854311122 45799999999999999875
No 442
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.38 E-value=1.6e+02 Score=28.35 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
.|.+||..|+.++..|-++=..+..|.+.+.+++++
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555544
No 443
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=28.37 E-value=1.1e+02 Score=40.09 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=16.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 847 LAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 847 ~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
+..+|-+|....++-|+.|..+|+.|
T Consensus 847 vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 847 VVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666677776666655
No 444
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=28.33 E-value=1.4e+02 Score=26.37 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchhhhh
Q 001683 831 NQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAAKEA 882 (1030)
Q Consensus 831 ~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~~~~ 882 (1030)
+.+|+.++++++..-++|.+ ..-+|++++|-||.+-..
T Consensus 1 m~d~~eLk~evkKL~~~A~~--------------~kmdLHDLaEdLP~~w~~ 38 (66)
T PF05082_consen 1 MSDIEELKKEVKKLNRKATQ--------------AKMDLHDLAEDLPTNWEE 38 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHCTTTTGGG
T ss_pred CchHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHccchhHHH
No 445
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.30 E-value=4.4e+02 Score=23.63 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
+.|.+|+.+-+.|..+=..++.-|.++.++++|.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455666666666665555555555555555554
No 446
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=28.28 E-value=2.6e+02 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=18.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNL 823 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~ 823 (1030)
...++..-+.|.-||.+||.+...-
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~A 272 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRA 272 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888999988876543
No 447
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.26 E-value=3.6e+02 Score=34.94 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH--------------------HHHHHHHHHHHHhHhHHHH
Q 001683 802 LSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE--------------------EAWSLAREEAEKCKAAKEI 861 (1030)
Q Consensus 802 ~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~--------------------ea~~~a~ee~~k~kaake~ 861 (1030)
+.|--+.++.|+..|+.+-+.|.++.++.|..|..++.+++ |-+.+-.||.+-..|+.|+
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~ 480 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEM 480 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH----HHHHhhhhc
Q 001683 862 IKALAV----RLHTLSEKI 876 (1030)
Q Consensus 862 ik~l~~----qlk~~~e~l 876 (1030)
=.-|.. +-+||-|.|
T Consensus 481 ~EQL~Esn~ele~DLreEl 499 (1243)
T KOG0971|consen 481 NEQLQESNRELELDLREEL 499 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 448
>PF15456 Uds1: Up-regulated During Septation
Probab=28.22 E-value=2.5e+02 Score=27.78 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH-HHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE-AWSLARE 850 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e-a~~~a~e 850 (1030)
.+||..|+-|+..|..+|+.....|. +..|+.+ |..|++-
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 57888888888888888888888887 5555544 3444444
No 449
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=28.12 E-value=20 Score=40.11 Aligned_cols=55 Identities=20% Similarity=0.559 Sum_probs=39.4
Q ss_pred cccCCCCCCccccccccccccccccccCCceeeccCCCCccccccCCCCCCCCcccChhhHHhhhccCCc
Q 001683 609 ISVGDQSSCSQCRMPFGFRRKKHNCYNCGLHFCSACSTKKIINASLTPNKGKPSRVCDTCYNHLQKITHS 678 (1030)
Q Consensus 609 v~~~d~s~C~~C~~~F~f~rrrHhC~~CG~vfC~~Css~k~~~~~l~p~~~~p~RVC~~C~~~l~~~~~~ 678 (1030)
..+.....|-.|+.+-..+.|.- -|-.+||..|..-. +..+|..|-+.+++++..
T Consensus 85 ~l~p~VHfCd~Cd~PI~IYGRmI---PCkHvFCl~CAr~~------------~dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 85 QLGPRVHFCDRCDFPIAIYGRMI---PCKHVFCLECARSD------------SDKICPLCDDRVQRIEQI 139 (389)
T ss_pred ccCcceEeecccCCcceeeeccc---ccchhhhhhhhhcC------------ccccCcCcccHHHHHHHh
Confidence 33444667888988876555443 68899999997532 477899999998887754
No 450
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.12 E-value=1.7e+02 Score=32.32 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=7.9
Q ss_pred HHHHHhhhhcch
Q 001683 867 VRLHTLSEKISA 878 (1030)
Q Consensus 867 ~qlk~~~e~lp~ 878 (1030)
+-|+..+.-.|+
T Consensus 99 ~~l~~~aG~v~V 110 (247)
T COG3879 99 EKLRMLAGSVPV 110 (247)
T ss_pred HHHHHHhccCCC
Confidence 357777777774
No 451
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.07 E-value=5.6e+02 Score=26.19 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=3.4
Q ss_pred Hhhhhcc
Q 001683 871 TLSEKIS 877 (1030)
Q Consensus 871 ~~~e~lp 877 (1030)
++++|+-
T Consensus 134 ~~a~kil 140 (164)
T PRK14471 134 EIAEKVL 140 (164)
T ss_pred HHHHHHH
Confidence 4455543
No 452
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=28.04 E-value=7.8e+02 Score=30.70 Aligned_cols=191 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred EeecCCCcEEEEcCCCCCCccCCCCCCCcccC--cccccccCceeeccccCCCEEEEEecCCEEEEEEeCCeEEEEecCC
Q 001683 213 ERKDILKDVMIWGEGVLGGDIGGAVDGSVSQN--KTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGK 290 (1030)
Q Consensus 213 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~--~~~~~~~~P~~i~~~~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N~ 290 (1030)
+.-..+|+|.+|.--. +.. ........=..-+.....--.....+ .-.+-+..||+|-.|
T Consensus 259 ~gG~y~GqV~lWD~~~-------------~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W---- 320 (555)
T KOG1587|consen 259 AGGCYNGQVVLWDLRK-------------GSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSW---- 320 (555)
T ss_pred EeeccCceEEEEEccC-------------CCCCCCcccccccccCCcCeEEEEEeccCCC-CceEEEecCCcEeee----
Q ss_pred CCcCCCCCCccccccEEecccCCCc--------------EEEEEeCCCeEEEEeeCCCEEEecCCCCCCCc----cCCCC
Q 001683 291 DGRLGHKVNMDVSCPKLVECLSGIN--------------VQSVSCGEFQTCALTKSGEIYTWGHNNHGADL----VGERR 352 (1030)
Q Consensus 291 ~GQLG~g~~~~~~~P~~V~~l~~~~--------------I~~Va~G~~hslaLT~dG~VY~WG~n~~~~g~----LG~~~ 352 (1030)
.......|.....+.... ++....=-+|.++-|+.|.||..-...+.... -++..
T Consensus 321 -------~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 321 -------DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred -------eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Q ss_pred CcceeeceeeeccCCCccEEEEEeCCCceEEEeeCCcEEEEecCCCcccCCCCCCCcCCCeEeeecCCCeEEEEEecCCe
Q 001683 353 SRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWH 432 (1030)
Q Consensus 353 ~~~~~~P~~v~~~l~~~~Iv~IacG~~Hs~aLT~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~H 432 (1030)
...+..|.......+-..-.-.+||.|+..+.+++ ....|..--...-..+.+++-...|
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~--------------------~~~~Pl~~~~~~~~~v~~vaWSptr 453 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED--------------------VIASPLLSLDSSPDYVTDVAWSPTR 453 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEecccc--------------------CCCCcchhhhhccceeeeeEEcCcC
Q ss_pred EEEEEeeecccccccccCCeEEEE
Q 001683 433 TAAIVDIMVDRCKSNAIGGKLFTW 456 (1030)
Q Consensus 433 t~aLte~~~~~~~~~~s~G~Vy~W 456 (1030)
.++.. ..+.+|.|+.|
T Consensus 454 pavF~--------~~d~~G~l~iW 469 (555)
T KOG1587|consen 454 PAVFA--------TVDGDGNLDIW 469 (555)
T ss_pred ceEEE--------EEcCCCceehh
No 453
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.03 E-value=3.1e+02 Score=29.45 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 001683 816 LRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAE 853 (1030)
Q Consensus 816 l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~ 853 (1030)
..++...|+++.+..+.++++..++++.|+.--.|+.|
T Consensus 49 ~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA 86 (221)
T PF04012_consen 49 VMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA 86 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 33344677888888888888899999888765555544
No 454
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=28.03 E-value=2.8e+02 Score=32.50 Aligned_cols=73 Identities=26% Similarity=0.337 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHH--HHHHhHhHHHHHHHHHHHHHHhhh---
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLARE--EAEKCKAAKEIIKALAVRLHTLSE--- 874 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~e--e~~k~kaake~ik~l~~qlk~~~e--- 874 (1030)
++.++..++ .+|+.+|+..|+.+.+ +....+.++|+..|+.+ ++.=.+-|.+-+..|..+|++|-.
T Consensus 29 ~d~~~~~~~-~~e~~~L~~~v~~~~~--------~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e~~~l~~~l~~~e~~l~ 99 (359)
T PRK00591 29 SDQKRFRKL-SKEYAELEPIVEAYRE--------YKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEELK 99 (359)
T ss_pred cCHHHHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 4677777776665543 44555666666666643 222334555556777777777663
Q ss_pred --hcchhhh
Q 001683 875 --KISAAKE 881 (1030)
Q Consensus 875 --~lp~~~~ 881 (1030)
.||.+..
T Consensus 100 ~~ll~~~~~ 108 (359)
T PRK00591 100 ILLLPKDPN 108 (359)
T ss_pred HHhcCCCCC
Confidence 3666543
No 455
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.94 E-value=2.9e+02 Score=37.58 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001683 809 LNEEVQRLRDQARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 809 l~~ev~~l~~q~~~~~~~~~~~~~~~~ 835 (1030)
|.+|+.+|+.+...++.++...+.++.
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~ 852 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELE 852 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444444443333333
No 456
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.89 E-value=3.5e+02 Score=31.69 Aligned_cols=50 Identities=24% Similarity=0.196 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchh
Q 001683 830 GNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 830 ~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~ 879 (1030)
.+.+++..-++..++-.--.+--.|.+.|-+=|..+|.+|.+++|+|-.-
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33455555555666666666667788899999999999999999998765
No 457
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.85 E-value=2.4e+02 Score=28.94 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHH--HHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHH------
Q 001683 799 EKDLSESNKMLNE---EVQRLRDQARNLEKQCQIGNQKVQ--ECQQKIEEAWSLAREEAEKCKAAKEIIKALAV------ 867 (1030)
Q Consensus 799 ~~~~~~~~~~l~~---ev~~l~~q~~~~~~~~~~~~~~~~--~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~------ 867 (1030)
..+..+.-+-|.. .+..|++|++.|+.+.+....+.+ ..+.++.-|+..|-.++ |++-++-|..-|..
T Consensus 36 l~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~a-kakn~~av~allD~d~l~l~ 114 (155)
T PF06810_consen 36 LKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGA-KAKNPKAVKALLDLDKLKLD 114 (155)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHhcCHHHeeeC
Q ss_pred ---------HHHHhhhhcc
Q 001683 868 ---------RLHTLSEKIS 877 (1030)
Q Consensus 868 ---------qlk~~~e~lp 877 (1030)
||+.+.|.=|
T Consensus 115 ~dg~~Gldeqi~~lkes~~ 133 (155)
T PF06810_consen 115 DDGLKGLDEQIKALKESDP 133 (155)
T ss_pred CCccccHHHHHHHHHhcCc
No 458
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.83 E-value=2.7e+02 Score=32.00 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
+.|+...++|.+.+..|..=+..|.++.+....|+..+++-..|
T Consensus 154 ~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 154 EGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444555555555555555555555555555555555544444
No 459
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=27.82 E-value=2.5e+02 Score=35.86 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhh
Q 001683 805 SNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 805 ~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e 874 (1030)
..++-.-||+||+.|+..++.+=-.+-..||+++++++.|-.-..+.-+| |--|+++|+.|..
T Consensus 259 fSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~ek-------i~~L~e~l~aL~~ 321 (717)
T PF09730_consen 259 FSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEK-------INRLTEQLDALRK 321 (717)
T ss_pred hhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 44566789999999999988888888899999999998776655554333 6666666666654
No 460
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.81 E-value=2e+02 Score=37.66 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhH
Q 001683 800 KDLSESNKMLNEEVQRLRDQA-----------------------RNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCK 856 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~-----------------------~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~k 856 (1030)
|-=.|.-.-|++||.|||++. +.|.+|++.+|.++.++++.-+ +|-+
T Consensus 357 dpnaKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~----------EKl~ 426 (1221)
T KOG0245|consen 357 DPNAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWE----------EKLR 426 (1221)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 333445556899999999853 4455555444444444333333 3455
Q ss_pred hHHHHHHHHHHHHHHhhhhc
Q 001683 857 AAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 857 aake~ik~l~~qlk~~~e~l 876 (1030)
-|..+-++=++.|++|.-.+
T Consensus 427 ~aEair~e~~~~L~emGva~ 446 (1221)
T KOG0245|consen 427 EAEAIRMEREALLAEMGVAV 446 (1221)
T ss_pred HHHHHHHhHHHHHHhcCcee
Confidence 55555555556677775443
No 461
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=27.71 E-value=1.2e+02 Score=27.39 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=5.3
Q ss_pred HHHHHHHHhHHHH
Q 001683 832 QKVQECQQKIEEA 844 (1030)
Q Consensus 832 ~~~~~~~~~~~ea 844 (1030)
.||++.++.+.+|
T Consensus 57 ~el~~~~~~l~~a 69 (75)
T PF07989_consen 57 RELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 462
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=27.64 E-value=2.1e+02 Score=36.13 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 814 QRLRDQARNLEKQCQIGNQKVQECQQKIEEAWS-------LAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 814 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~-------~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
.+++.+++.|+++.+..|.++.++..++.+.-. .+.+-.....++++-|..|.++.-+++|+|
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555544445445444444432100 122223345666777888888888888876
No 463
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.63 E-value=1.8e+02 Score=26.71 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001683 803 SESNKMLNEEVQRLRDQARNLEKQCQIG 830 (1030)
Q Consensus 803 ~~~~~~l~~ev~~l~~q~~~~~~~~~~~ 830 (1030)
+..++-|.+|+..||..+..|-++-+..
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~V 42 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEV 42 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888777776664433
No 464
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.63 E-value=1.1e+03 Score=32.28 Aligned_cols=164 Identities=18% Similarity=0.216 Sum_probs=82.8
Q ss_pred EeecCCCcEEEEcCCCCCCccCCCCCCCcccCcccccccCceeeccccCCCEEEEEecCCEEEEEEeCCeEEEEecCCCC
Q 001683 213 ERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGKDG 292 (1030)
Q Consensus 213 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~N~~G 292 (1030)
+=++.|.++|+|-.+. ++++-.-+.-. ..-.+.....|++--+ +.. -.|.++|..--+|+..|-...-
T Consensus 93 aWiTiDn~L~lWny~~-~~e~~~~d~~s--htIl~V~LvkPkpgvF-----v~~----IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYES-DNELAEYDGLS--HTILKVGLVKPKPGVF-----VPE----IQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eEEEeCCeEEEEEcCC-CCccccccchh--hhheeeeeecCCCCcc-----hhh----hheeEEecccceEEEEEEEecc
Confidence 5678999999999988 66654433210 0000111222322211 111 2688999999999998853321
Q ss_pred -cCCCCCCccccccEEecccCCCcEEEEEe-CCCeEEEE-eeCCCEEEecCCCC--------CCCccCCCC--------C
Q 001683 293 -RLGHKVNMDVSCPKLVECLSGINVQSVSC-GEFQTCAL-TKSGEIYTWGHNNH--------GADLVGERR--------S 353 (1030)
Q Consensus 293 -QLG~g~~~~~~~P~~V~~l~~~~I~~Va~-G~~hslaL-T~dG~VY~WG~n~~--------~~g~LG~~~--------~ 353 (1030)
..+.....+. -+|+. |-+-.++. |++|+||.-|.+.+ ..|..+... .
T Consensus 161 ~~~~~~~f~~~--------------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ 226 (1311)
T KOG1900|consen 161 FTGELSIFNTS--------------FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSV 226 (1311)
T ss_pred ccCcccccccc--------------eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhH
Confidence 1111111111 12222 33333444 55666665555421 012222211 1
Q ss_pred cceeeceeeecc-CCCccEEEEEeCCCceE--EEeeCCcEEEEecCCCcccC
Q 001683 354 RSHWLPRKLFDT-LDGVRVSKVACGEWHTA--IVSTSGQLFTYGDGTFGVLG 402 (1030)
Q Consensus 354 ~~~~~P~~v~~~-l~~~~Iv~IacG~~Hs~--aLT~dG~Vy~wG~N~~GQLG 402 (1030)
....+|..+.-+ .....|.+|+.+....+ .+++.|.|=+|--+..|+-+
T Consensus 227 ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 227 LSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred HHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 122344422222 34568999999987765 56778887777555555443
No 465
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.62 E-value=3.4e+02 Score=35.70 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=15.9
Q ss_pred cccccCCCC---CCCCCeEEEEEc--CCCc--cceeec
Q 001683 32 VNFQCQPQP---DRKQQSFSIIYA--NGER--SLDLIC 62 (1030)
Q Consensus 32 ~~f~~~~~~---~~~~~~Fsii~~--~~~~--sLdLv~ 62 (1030)
++|+.|+.. ..=+-.|--|-| |.-+ =||=||
T Consensus 9 DGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsIC 46 (1174)
T KOG0933|consen 9 DGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSIC 46 (1174)
T ss_pred cchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHH
Confidence 567777653 222455666654 2222 356665
No 466
>PRK14011 prefoldin subunit alpha; Provisional
Probab=27.61 E-value=1.2e+02 Score=30.71 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKAL 865 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l 865 (1030)
|||++++..+++.|.++.+....+|+.++.-..|. ..|+|.|+.|
T Consensus 2 ~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~-----------~~~ie~L~~l 46 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQKLQEELSSIDMMKMEL-----------LKSIESMEGL 46 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHcc
No 467
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=27.47 E-value=5.8e+02 Score=26.04 Aligned_cols=12 Identities=25% Similarity=0.471 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 001683 815 RLRDQARNLEKQ 826 (1030)
Q Consensus 815 ~l~~q~~~~~~~ 826 (1030)
+++.+++.+..+
T Consensus 53 ~~~~ea~~~~~e 64 (164)
T PRK14471 53 EARKEMQNLQAD 64 (164)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 468
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=27.44 E-value=2.2e+02 Score=32.24 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=33.8
Q ss_pred HHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 826 QCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 826 ~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
+..+-+.+..+.+..++||-..+.+.-.+.+.|.+.++....+-|+-+.+.
T Consensus 90 ~~~l~~~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~ak~aa~~A 140 (286)
T PF11727_consen 90 KGKLTDSDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEETHEEAKEAAAKA 140 (286)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445666667777777777777777777777777777666666666554
No 469
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=27.41 E-value=5e+02 Score=28.83 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 001683 805 SNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEK 854 (1030)
Q Consensus 805 ~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k 854 (1030)
..++..+-..+|+.....+.++....+.+.++.+++++++-....++-+|
T Consensus 83 ~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k 132 (256)
T PF14932_consen 83 YKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSK 132 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444455555555555555555555555544444333
No 470
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.37 E-value=1.2e+02 Score=29.84 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=28.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQE 836 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~ 836 (1030)
..+.++|++.-+.|.-+|..|+.|-+.|+++.+....+|++
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888777777777777776655555553
No 471
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.37 E-value=1.5e+02 Score=29.50 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 001683 801 DLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA 844 (1030)
Q Consensus 801 ~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea 844 (1030)
++...-+.|...+..|..+++.|+++......+++...++++++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666555555555555555555553
No 472
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=27.36 E-value=2.8e+02 Score=35.20 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=12.3
Q ss_pred CHHHHHHHHHhccchhhee
Q 001683 996 TEKAAERWWEENQVVVYQK 1014 (1030)
Q Consensus 996 ~~~~~~~ww~~n~~~~~~~ 1014 (1030)
.|.+-+.-|+.|..+-|..
T Consensus 1224 ~~~eFe~~W~r~Ggk~~~~ 1242 (1259)
T KOG0163|consen 1224 LEHEFEREWERNGGKAYKN 1242 (1259)
T ss_pred ChHHHHHHHHHhCcHHhHh
Confidence 3667777777777665544
No 473
>PRK10698 phage shock protein PspA; Provisional
Probab=27.35 E-value=1.9e+02 Score=31.55 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH-----HHHHHHHHHHh
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEA-----WSLAREEAEKC 855 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea-----~~~a~ee~~k~ 855 (1030)
+.+..|+.|++..+...+.....|++++.++++| ..+|+..+|+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443 34555555443
No 474
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.29 E-value=3.7e+02 Score=28.43 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhh
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE----EAWSLAREEAEKCKAAKEIIKALAVRLHTLSE 874 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~----ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e 874 (1030)
...+.........++..|++++..|+.++..++.+|....+-++ |-.++=.+ ...+.+=++.|..+=++|-+
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~----~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ----LNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_pred hc
Q 001683 875 KI 876 (1030)
Q Consensus 875 ~l 876 (1030)
|+
T Consensus 180 Rw 181 (194)
T PF08614_consen 180 RW 181 (194)
T ss_dssp HH
T ss_pred HH
No 475
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=27.27 E-value=69 Score=31.67 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhhcchh
Q 001683 862 IKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 862 ik~l~~qlk~~~e~lp~~ 879 (1030)
+..+..+|+++..+||.+
T Consensus 32 ~~~~~~~l~~~~~~lP~~ 49 (144)
T PF04350_consen 32 LEQLEQQLEELLKKLPAE 49 (144)
T ss_dssp HHHHHHHHHHHHHCTTGG
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 444555666666666655
No 476
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=27.23 E-value=2.3e+02 Score=33.50 Aligned_cols=72 Identities=25% Similarity=0.219 Sum_probs=49.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQC----------QIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKAL 865 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~----------~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l 865 (1030)
+.....|++-|..||+|-.++++.++.|+.+- .+...|+++-+-.+++|+..-+|+-.|.+-+..+-+++
T Consensus 54 E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~ 133 (459)
T KOG0288|consen 54 ELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEAL 133 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHh
Confidence 34467789999999999988888665555443 33334455555566788888888888888777666655
Q ss_pred HH
Q 001683 866 AV 867 (1030)
Q Consensus 866 ~~ 867 (1030)
.+
T Consensus 134 ~~ 135 (459)
T KOG0288|consen 134 KD 135 (459)
T ss_pred hh
Confidence 44
No 477
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.20 E-value=2.1e+02 Score=29.58 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIE 842 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 842 (1030)
.|..|.++|+.+++.|+++-+.++.|++++.+++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888877777777663
No 478
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.15 E-value=1.9e+02 Score=28.39 Aligned_cols=38 Identities=37% Similarity=0.367 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW 845 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~ 845 (1030)
-|+..+.-+...++.|+++-+..+.++.+.+++++++.
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555666666666666666666666666654
No 479
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=27.13 E-value=1.1e+02 Score=38.43 Aligned_cols=103 Identities=21% Similarity=0.350 Sum_probs=61.2
Q ss_pred EEecCCEEEEEEeCCeEEEEecCCCCcCCCCCCccccccEEecccCCCcEEEEEeCCCeEEEEeeCCC-EEEecCCCCCC
Q 001683 267 ISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGE-IYTWGHNNHGA 345 (1030)
Q Consensus 267 Ia~G~~hs~~Lt~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hslaLT~dG~-VY~WG~n~~~~ 345 (1030)
|+.|..|-+++. ||.|-.|..+.- ..| ..+|..|+..+.-++++|.-.. |-.|-..
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~as-----------nki----ss~Vsav~fsEdgSYfvT~gnrHvk~wyl~---- 194 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGAS-----------NKI----SSVVSAVAFSEDGSYFVTSGNRHVKLWYLQ---- 194 (1080)
T ss_pred EeeccccceEEE----hhhhhhcccccc-----------ccc----ceeEEEEEEccCCceeeeeeeeeEEEEEee----
Confidence 456777777775 888887765421 111 2367777777777777776543 4444222
Q ss_pred CccCCCCCcceeecee--eeccCCCccEEEEEeCCC----ceEEEeeCCcEEEEe
Q 001683 346 DLVGERRSRSHWLPRK--LFDTLDGVRVSKVACGEW----HTAIVSTSGQLFTYG 394 (1030)
Q Consensus 346 g~LG~~~~~~~~~P~~--v~~~l~~~~Iv~IacG~~----Hs~aLT~dG~Vy~wG 394 (1030)
.+........+|-+ +.+.+.......|+||.. .+++||..|.|.-|.
T Consensus 195 --~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 195 --IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred --ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 11111122222222 234455567889999997 899999988776554
No 480
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.13 E-value=1.9e+02 Score=35.96 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQ----------ARNLEKQCQIGNQKVQ 835 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q----------~~~~~~~~~~~~~~~~ 835 (1030)
.+.++..|+.|..|+.+|+.. ++.+.++.+..+.++.
T Consensus 319 l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 319 LEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666654 4445444444444444
No 481
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.94 E-value=4.4e+02 Score=26.45 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH-HHHHhHHHHHHHHHHHHHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQ-ECQQKIEEAWSLAREEAEK 854 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~-~~~~~~~ea~~~a~ee~~k 854 (1030)
++..+++.+++.++++.+..-.+.. +.++.+++|..-|.+|+++
T Consensus 48 ~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~ 92 (141)
T PRK08476 48 EKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEK 92 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666544333222 3344444555555555443
No 482
>PLN02372 violaxanthin de-epoxidase
Probab=26.89 E-value=2.8e+02 Score=32.84 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=10.5
Q ss_pred HhHhHHHHHHHHHHHHHHh
Q 001683 854 KCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 854 k~kaake~ik~l~~qlk~~ 872 (1030)
-.|..+++++-|.-++.++
T Consensus 426 lskee~~~l~~~~~~~~~v 444 (455)
T PLN02372 426 LSKEEKELLEKLKMEASEV 444 (455)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455556666665555554
No 483
>PRK06746 peptide chain release factor 2; Provisional
Probab=26.87 E-value=3.3e+02 Score=31.52 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHH--HHHhHhHHHHHHHHHHHHHHhh-hhc
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREE--AEKCKAAKEIIKALAVRLHTLS-EKI 876 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee--~~k~kaake~ik~l~~qlk~~~-e~l 876 (1030)
++.++.- -|.+|+..|+.-|+.+++ +....+.++++..|+.+| .+=..-|++-|+.|..+|+.+- +.|
T Consensus 8 ~d~~~~~-~~~ke~~~l~~~v~~~~~--------~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le~~~l 78 (326)
T PRK06746 8 DDQQGAQ-AVINEANALKDMVGKFRQ--------LDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLL 78 (326)
T ss_pred cCHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444433 345777777776666544 344445555555555332 2222345555677777777664 456
Q ss_pred chhh
Q 001683 877 SAAK 880 (1030)
Q Consensus 877 p~~~ 880 (1030)
|.+.
T Consensus 79 ~~~~ 82 (326)
T PRK06746 79 LSDP 82 (326)
T ss_pred cCCC
Confidence 6543
No 484
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=26.73 E-value=5.8e+02 Score=25.58 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEK 825 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~ 825 (1030)
..+++..+-+.+|+..++.+++.+.+
T Consensus 39 ~~l~~~~~~~~~~l~~~~~el~~~~~ 64 (158)
T PF03938_consen 39 AKLQEKFKALQKELQAKQKELQKLQQ 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 485
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=26.67 E-value=3.2e+02 Score=33.31 Aligned_cols=81 Identities=25% Similarity=0.287 Sum_probs=54.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHH--------HHhHhHHHHHHHHHHHHH
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEA--------EKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~--------~k~kaake~ik~l~~qlk 870 (1030)
...-++.|.+|+-|++--.++..-+..+.+-....|+.+=-.++.|--+|..|. +|..+.-+=++.|+-+||
T Consensus 282 ~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lk 361 (531)
T PF15450_consen 282 QQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLK 361 (531)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777888888776666666666666666666655444444433333331 577777788899999999
Q ss_pred Hhhhhcchh
Q 001683 871 TLSEKISAA 879 (1030)
Q Consensus 871 ~~~e~lp~~ 879 (1030)
+|.++++.-
T Consensus 362 DLd~~~~aL 370 (531)
T PF15450_consen 362 DLDDHILAL 370 (531)
T ss_pred HHHHHHHHH
Confidence 999998764
No 486
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=26.55 E-value=1.3e+02 Score=32.14 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=10.0
Q ss_pred HHHHHHHHHH---HHHHhhhhcchh
Q 001683 858 AKEIIKALAV---RLHTLSEKISAA 879 (1030)
Q Consensus 858 ake~ik~l~~---qlk~~~e~lp~~ 879 (1030)
-++|+.+|.. -||.+-..+..+
T Consensus 106 ~~ev~~aLk~g~~aLK~~~k~~~id 130 (191)
T PTZ00446 106 HKIAVNALSYAANTHKKLNNEINTQ 130 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 3444444433 455555555443
No 487
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=26.54 E-value=5.8e+02 Score=26.66 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=3.7
Q ss_pred HHHHHHhHHH
Q 001683 834 VQECQQKIEE 843 (1030)
Q Consensus 834 ~~~~~~~~~e 843 (1030)
|+..+++.++
T Consensus 88 L~~A~~ea~~ 97 (184)
T PRK13455 88 QREVQEQADR 97 (184)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 488
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.54 E-value=1.2e+02 Score=28.86 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=36.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ 839 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~ 839 (1030)
..+.+.|+..-+.|..++.+|..+.+.|..+......+|++++|
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45577788888888999999999999999988888888887764
No 489
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=26.53 E-value=1.6e+02 Score=28.31 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLH 870 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk 870 (1030)
.+||.-||.|++.|.++-.++|+|-..+ |.-+--|.++.|.+||.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lL----------------k~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLL----------------KTLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhCCHHHHHHHHHhcc
Confidence 7899999999999988877766554332 23445566666666654
No 490
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=26.52 E-value=1.4e+02 Score=27.09 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW 845 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~ 845 (1030)
+.+-++.-.++.|..|++.-+..||.+++||+|..
T Consensus 44 ~q~~k~~~~~~~L~~~~~r~~l~vQlt~EkLdel~ 78 (80)
T PF11488_consen 44 QQDCKTEMEVKMLETQDPRDELNVQLTQEKLDELL 78 (80)
T ss_pred HHHHHHHHHHHHHHHhchhhHHhHHHHHHhHHHHh
Confidence 33333334578899999999999999999988754
No 491
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=26.48 E-value=5.7e+02 Score=24.32 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 813 VQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 813 v~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
+..++.+++++.++...-...-.....+.+||..-|.+=.+...+|..--..--.+++-|=||
T Consensus 30 ~d~~~~~a~~a~~~a~~a~~~A~~A~~~AdeA~~kA~~A~aaA~~Aqq~A~eAnek~~RMfek 92 (96)
T PF11839_consen 30 LDEAQSTAEQAQATAASAQSAAASAQQRADEAASKADAALAAAEAAQQTADEANEKADRMFEK 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777767777777777777777665555555544433334455555544
No 492
>PRK14159 heat shock protein GrpE; Provisional
Probab=26.45 E-value=2.8e+02 Score=29.15 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 001683 810 NEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALA 866 (1030)
Q Consensus 810 ~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~ 866 (1030)
-+|+..|+.++..|+.+....-.+++-++|+.+.-..-+.+. +.-+.++++|-.+.
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~-a~~~~~~~LLpV~D 84 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAY-ANESFAKDLLDVLD 84 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHh
Confidence 455666777777777666666666665555554443333321 22344444444443
No 493
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=26.43 E-value=2.4e+02 Score=32.15 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhcchh
Q 001683 825 KQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKISAA 879 (1030)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~lp~~ 879 (1030)
.=...+..||+...++++++...... +...++.|+.|+.+...+|++-.|+-..
T Consensus 84 ~L~~~L~~eI~~f~~~l~~~~~~~e~-~~~~~~~~~~i~~V~~~ik~LL~rId~a 137 (302)
T PF05508_consen 84 PLTKDLRREIDSFDERLEEAAEKEEL-SKSSENQKESIKKVERYIKDLLARIDDA 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 34445667888888888887653222 6667888999999999999888776543
No 494
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.43 E-value=5e+02 Score=23.71 Aligned_cols=67 Identities=27% Similarity=0.384 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 808 MLNEEVQRLRDQARNLEKQCQIGNQKVQECQQ--KIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 808 ~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~--~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
-+.+.|..|+.-=..|..+.+....+|+++.. .+.+.+.++. =..|....|.=|-+|-..++.|.+|
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444334455555555555655554 3333445555 6666666666666666666655554
No 495
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.31 E-value=2.2e+02 Score=34.95 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001683 799 EKDLSESNKMLNEEVQRLRDQARNLEKQCQIGN 831 (1030)
Q Consensus 799 ~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~ 831 (1030)
+..|++.-+-|.+|+.+++++...++.+....+
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666666666554443
No 496
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=26.23 E-value=1.3e+02 Score=22.51 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001683 812 EVQRLRDQARNLEKQCQIGNQKVQECQ 838 (1030)
Q Consensus 812 ev~~l~~q~~~~~~~~~~~~~~~~~~~ 838 (1030)
|=++|-++.+.|+.+.|++..+|+.+.
T Consensus 2 dEqkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 2 DEQKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.22 E-value=1.1e+02 Score=30.42 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHH
Q 001683 798 VEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEE 843 (1030)
Q Consensus 798 ~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~e 843 (1030)
..+.|++.-+.|...+.+|..++..++++.+.....+++..++.++
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 140 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAAA 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 498
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=26.20 E-value=3.5e+02 Score=27.33 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH-----HHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 001683 811 EEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAW-----SLAREEAEKCKAAKEIIKALAVRLHTL 872 (1030)
Q Consensus 811 ~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~-----~~a~ee~~k~kaake~ik~l~~qlk~~ 872 (1030)
+-+.+|+.+.+.|.++....+.++.++.++++++. ..|+--+.+.|.....+..+..++--|
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l 67 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNL 67 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PRK12704 phosphodiesterase; Provisional
Probab=26.17 E-value=2.3e+02 Score=34.95 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhhc
Q 001683 800 KDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEKI 876 (1030)
Q Consensus 800 ~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~l 876 (1030)
+.|.+..+-|.+.-..|..+-+.|+++-+..+..+++..+++++...|-.|||- +.+++.+..+++.=+.++
T Consensus 103 e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~-----~~l~~~~~~~~~~~~~~~ 174 (520)
T PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK-----EILLEKVEEEARHEAAVL 174 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHHHHHHHHHH
No 500
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=26.13 E-value=6.2e+02 Score=24.95 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhhh
Q 001683 796 STVEKDLSESNKMLNEEVQRLRDQARNLEKQCQIGNQKVQECQQKIEEAWSLAREEAEKCKAAKEIIKALAVRLHTLSEK 875 (1030)
Q Consensus 796 ~~~~~~~~~~~~~l~~ev~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~ee~~k~kaake~ik~l~~qlk~~~e~ 875 (1030)
+++.+-|.+-.+-+...+.....--+...+.....+.+|+..+++..+-..-|++|+.+.+.. ++...-.++..|-++
T Consensus 28 ~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~--~~~~a~~ea~~~~~~ 105 (140)
T PRK07353 28 KPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAE--ALAEAQAEAQASKEK 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Done!