Query 001683
Match_columns 1030
No_of_seqs 572 out of 2879
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 16:16:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001683.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_981-984//hhsearch_pdb/001683hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 1.0 1 1 570.7 38.3 372 211-607 12-388 (389)
2 4d9s_A UVB-resistance protein 1.0 1 1 555.0 44.9 362 200-586 16-379 (406)
3 3of7_A Regulator of chromosome 1.0 1 1 548.7 41.9 379 206-606 16-450 (473)
4 3mvd_K Regulator of chromosome 1.0 1 1 544.0 46.0 372 203-607 27-419 (423)
5 1a12_A RCC1, regulator of chro 1.0 1 1 540.0 43.9 372 207-608 15-411 (413)
6 4d9s_A UVB-resistance protein 1.0 1 1 513.3 42.2 336 261-611 15-352 (406)
7 3kci_A Probable E3 ubiquitin-p 1.0 1 1 487.6 31.4 332 266-611 5-340 (389)
8 3of7_A Regulator of chromosome 1.0 1 1 470.5 27.1 332 202-553 69-449 (473)
9 3mvd_K Regulator of chromosome 1.0 1 1 469.6 32.4 329 262-613 24-371 (423)
10 1a12_A RCC1, regulator of chro 1.0 1 1 464.8 36.0 329 201-556 60-411 (413)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=570.70 Aligned_cols=372 Identities=32% Similarity=0.552 Sum_probs=344.8
Q ss_pred CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEECCEEEEEECCC
Q ss_conf 05854689949998489999946899989855676531234746622336899799996598799998099199996699
Q 001683 211 LIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCWGEGK 290 (1030)
Q Consensus 211 ~~~~l~~~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~ie~~~~~~I~~Ia~G~~hs~~Lt~dG~VysWG~Ns 290 (1030)
.+.+++.+|+||+||.|. .||||.+.. .+...|++++.+....|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~l~~~G~v~~wG~n~-~GqLG~~~~---------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNH-RGQLGGIEG---------AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp ---------CEEEEEECT-TSTTSSCSC---------SEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred CCEEECCCCEEEEEECCC-CCCCCCCCC---------CCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCC
T ss_conf 226688998699703899-751898968---------6642777601346786599984777399995898199988999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCE--EEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEEECEEEECCCCC
Q ss_conf 99678789966445579321599949--9998079838999408979992689999986688888631100132026899
Q 001683 291 DGRLGHKVNMDVSCPKLVECLSGINV--QSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWLPRKLFDTLDG 368 (1030)
Q Consensus 291 ~GqLG~g~~~~~~~P~~V~~l~~~~I--~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~G~LG~g~~~~~~~P~~i~~~l~~ 368 (1030)
+||||++...+...|.++..+.+..+ ++|+||.+|++||+++|+||+||.| ..|+||++.......|..+.. +.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~ 158 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG 158 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCCCCEEECC-CCC
T ss_conf 98889899677337777110157732599987687749999489979997299--898678998756758768436-689
Q ss_pred CCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECC--CEEEEEEEEECCCCCC
Q ss_conf 62999996988059995189499971699855578898786777275302798499997159--7389999500123444
Q 001683 369 VRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGP--WHTAAIVDIMVDRCKS 446 (1030)
Q Consensus 369 ~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~g~~I~~IAcG~--~Ht~aLte~~~~~~~~ 446 (1030)
.+|++|+||..|+++|+++|+||+||.|.+||||+++......|..+..+.+.+|++|+||. .|+++|+
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~--------- 229 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT--------- 229 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---------
T ss_pred CEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC---------
T ss_conf 73999971758589994898089948998887689998660455685045898399999768985899990---------
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCC-CC
Q ss_conf 45699299995699997678799742320685102457459998356434999479819998189889889999988-60
Q 001683 447 NAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAKD-RS 525 (1030)
Q Consensus 447 ~~sdG~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~qIa~G~~htvaLT~dG~Vy~wG~N~~GQLG~g~~~~-~~ 525 (1030)
.+|+||+||.|.+||||.++......|+.+..+.+.+|++|+||..|++||+++|+||+||.|.+||||.+.... ..
T Consensus 230 --~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 307 (389)
T 3kci_A 230 --DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR 307 (389)
T ss_dssp --TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred --CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf --599799973998887798998885446795466899679994799879999589939998589998888999866208
Q ss_pred EEEEECCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEEE
Q ss_conf 16995345564179998478711688249829999379999999999987520036412357725774205885311310
Q 001683 526 ITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALRDRQVESVVCGSSITAAICL 605 (1030)
Q Consensus 526 P~~v~~~l~~~~V~~Ia~G~~Ht~aLTs~G~VytWG~n~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~IacG~~hT~aI~~ 605 (1030)
|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|+.+.+.+|.+|+||..||++|+.
T Consensus 308 P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~ 386 (389)
T 3kci_A 308 PRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWST 386 (389)
T ss_dssp EEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEECC
T ss_pred CEEECC-CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEEEC
T ss_conf 758514-7999889999445709999899989980389988688989877467679113589987999966782899946
Q ss_pred CC
Q ss_conf 24
Q 001683 606 HK 607 (1030)
Q Consensus 606 ~k 607 (1030)
.+
T Consensus 387 ~~ 388 (389)
T 3kci_A 387 SK 388 (389)
T ss_dssp --
T ss_pred CC
T ss_conf 99
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=555.03 Aligned_cols=362 Identities=33% Similarity=0.539 Sum_probs=335.7
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 53122125886058546899499984899999468999898556765312347466223368997999965987999980
Q 001683 200 HRLVTPTYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTK 279 (1030)
Q Consensus 200 s~~s~~s~Gs~~~~~l~~~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~ie~~~~~~I~~Ia~G~~hs~~Lt~ 279 (1030)
..+..++.|..|.++++.+|.||+||.|. .||||.+.. .+...|+++..+...+|++|+||..|+++|++
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~~---------~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~ 85 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGE-DGQLGHGDA---------EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 85 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCT-TSTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECSSEEEEEET
T ss_pred CCEEEEECCCCEEEEEEECCEEEEEECCC-CCCCCCCCC---------CCCCCCEEECCCCCCCEEEEEECCCEEEEEEC
T ss_conf 64699961879099998299899986999-988897986---------55738878224689978999828450899988
Q ss_pred CC-EEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEEE
Q ss_conf 99-19999669999678789966445579321599949999807983899940897999268999998668888863110
Q 001683 280 EG-EVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSHWL 358 (1030)
Q Consensus 280 dG-~VysWG~Ns~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~G~LG~g~~~~~~~ 358 (1030)
+| +||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|++||+++|+||+||.| ..||||.+.......
T Consensus 86 ~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~ 163 (406)
T 4d9s_A 86 SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLV 163 (406)
T ss_dssp TTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEE
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECHHHEEEECCCCCEEEECCC--CCCCCCCCCCCCCCC
T ss_conf 899899975998868998998764610684146899889999770465897389859990799--875477989877552
Q ss_pred CEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCEEEEEEE
Q ss_conf 01320268996299999698805999518949997169985557889878677727530279849999715973899995
Q 001683 359 PRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVKSVACGPWHTAAIVD 438 (1030)
Q Consensus 359 P~~i~~~l~~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~g~~I~~IAcG~~Ht~aLte 438 (1030)
|.++.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|..+..+.+.+|++|+||.+|+++|+
T Consensus 164 p~~v~~-~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~- 241 (406)
T 4d9s_A 164 PQKIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS- 241 (406)
T ss_dssp EEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEE-
T ss_pred CEEECC-CCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEEC-
T ss_conf 357435-689738999647873999947998898417988877889987768627840368962999997898189994-
Q ss_pred EECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf 00123444456992999956999976787997423206851024574599983564349994798199981898898899
Q 001683 439 IMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGN 518 (1030)
Q Consensus 439 ~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~qIa~G~~htvaLT~dG~Vy~wG~N~~GQLG~ 518 (1030)
.+|+||+||.|.+||||+++......|+++..+.+..|++|+||.+|++||+++|+||+||.|.+||||.
T Consensus 242 ----------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~ 311 (406)
T 4d9s_A 242 ----------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 311 (406)
T ss_dssp ----------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred ----------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCC
T ss_conf ----------8998899638998878999876750567823258998899984678799995999099933899888878
Q ss_pred CCCCC-CCEEEEECCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 99988-601699534556417999847871168824982999937999999999998752003641235
Q 001683 519 PKAKD-RSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVEALR 586 (1030)
Q Consensus 519 g~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLTs~G~VytWG~n~~GQLG~G~~~~~~~Pt~V~~l~ 586 (1030)
+.... ..|..+. .+....|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 312 g~~~~~~~p~~v~-~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 312 GNNLDQCSPVQVR-FPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp SSSSCEEEEEEEC-CGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred CCCCCCCCCEEEE-CCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 9987774677973-2679858999928994999948997899659988866899987773887850026
No 3
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=548.73 Aligned_cols=379 Identities=22% Similarity=0.370 Sum_probs=320.7
Q ss_pred CCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCEEEEEECCCEEEEEEECCEE
Q ss_conf 258860585468994999848999994689998985567653123474662233--689979999659879999809919
Q 001683 206 TYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESA--VMLDVQNISLGAKHAALVTKEGEV 283 (1030)
Q Consensus 206 s~Gs~~~~~l~~~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~ie~~--~~~~I~~Ia~G~~hs~~Lt~dG~V 283 (1030)
..+..|.++++.+|+||+||.|. .||||.|.... ..+...|++++.+ ...+|++|+||..|+++|+++|+|
T Consensus 16 ~~~~~h~~~~~~~g~v~~wG~n~-~GqLG~G~~~~------~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v 88 (473)
T 3of7_A 16 QEDYKHMYLSVQPLDIFCWGTGS-MCELGLGPLAK------NKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88 (473)
T ss_dssp GGGGHHHHCCSSCCEEEEEEECT-TSTTCSCSCGG------GGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCE
T ss_pred CCCCCCCCCCCCCCCEEEECCCC-CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEE
T ss_conf 13420102678876589981898-87369897766------644557621554555778789997078769999169849
Q ss_pred EEEECCCCCCCCCCCCCC-----------------------CCCCEEECC--C----CCCCEEEEEECCCEEEEEEECCC
Q ss_conf 999669999678789966-----------------------445579321--5----99949999807983899940897
Q 001683 284 FCWGEGKDGRLGHKVNMD-----------------------VSCPKLVEC--L----SGINVQSVSCGEFQTCALTKSGE 334 (1030)
Q Consensus 284 ysWG~Ns~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~Va~G~~hs~aLT~dG~ 334 (1030)
|+||.|.+||||++.... ...|.+|.. + .+.+|++|+||.+|++||+++|+
T Consensus 89 ~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~ 168 (473)
T 3of7_A 89 WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGE 168 (473)
T ss_dssp EEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCE
T ss_conf 99689988889998865333323456555675433444633467501343457754589818999826887999948984
Q ss_pred EEEECCCCCCCCCCCCCCC--CCEEECEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCC----
Q ss_conf 9992689999986688888--6311001320268996299999698805999518949997169985557889878----
Q 001683 335 IYTWGHNNHGADLVGERRS--RSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQN---- 408 (1030)
Q Consensus 335 Vy~WG~n~~~~G~LG~g~~--~~~~~P~~i~~~l~~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~~---- 408 (1030)
||+||.|..+.|+||.+.. .....|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||++....
T Consensus 169 vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~ 247 (473)
T 3of7_A 169 VYAWGTFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK 247 (473)
T ss_dssp EEEEECEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTT
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99946996898754888877741447677552-47888799996378389991799299976998888898844543335
Q ss_pred CCCCEEEEECCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC----CEEEEEEEEECCCC
Q ss_conf 67772753027984999971597389999500123444456992999956999976787997----42320685102457
Q 001683 409 VSQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGE----RKLLPTCVTRLVDF 484 (1030)
Q Consensus 409 ~~~P~~V~~l~g~~I~~IAcG~~Ht~aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~~----~~~~Pt~V~~l~~~ 484 (1030)
...|..+.. .+|++|+||.+|++||+ .+|+||+||.|.+||||.+... ....|+.|..+...
T Consensus 248 ~~~p~~~~~---~~v~~Ia~G~~hs~alt-----------~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~ 313 (473)
T 3of7_A 248 TLDPRPFGL---RHVKYIASGENHCFALT-----------KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV 313 (473)
T ss_dssp TCSCEECSC---CSEEEEEECSSEEEEEE-----------TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTC
T ss_pred CCCCEECCC---CCEEEEECCCCEEEEEE-----------CCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 437521277---66389954897589991-----------6998899378989885888765688445413212556786
Q ss_pred CEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC-----------CCCEEEEECCCCCC-CEEEEEECCCCEEEEE
Q ss_conf 45999835643499947981999818988988999998-----------86016995345564-1799984787116882
Q 001683 485 DFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPKAK-----------DRSITVVEGKLKEE-FVKGISSGSYHVAVLT 552 (1030)
Q Consensus 485 ~I~qIa~G~~htvaLT~dG~Vy~wG~N~~GQLG~g~~~-----------~~~P~~v~~~l~~~-~V~~Ia~G~~Ht~aLT 552 (1030)
+|++|+||..|+++|+++|+||+||.|.+||||.+... .......+..+... .|++|+||.+|++||+
T Consensus 314 ~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~ 393 (473)
T 3of7_A 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVA 393 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEE
T ss_pred CEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 38999867886999938982999878998741888444665310045786026216700478775379985787699996
Q ss_pred CCCEEEEEECCCCCCCCCCC-CCCCCEEEEEC--CCCCCEEEEEEECCCCCCEEEEC
Q ss_conf 49829999379999999999-98752003641--23577257742058853113102
Q 001683 553 SGGSVYTWGKNANGQLGLGD-SQERETPTFVE--ALRDRQVESVVCGSSITAAICLH 606 (1030)
Q Consensus 553 s~G~VytWG~n~~GQLG~G~-~~~~~~Pt~V~--~l~~~~V~~IacG~~hT~aI~~~ 606 (1030)
++|+||+||.|.+||||+|+ ..+...|++|+ .+.+++|.+|+||..||+++..+
T Consensus 394 ~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 394 QNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp TTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEEEC
T ss_conf 898489962898988879997765637848225666897289995188859999744
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=544.01 Aligned_cols=372 Identities=23% Similarity=0.367 Sum_probs=326.2
Q ss_pred CCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEECCE
Q ss_conf 22125886058546899499984899999468999898556765312347466223368997999965987999980991
Q 001683 203 VTPTYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGE 282 (1030)
Q Consensus 203 s~~s~Gs~~~~~l~~~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~ie~~~~~~I~~Ia~G~~hs~~Lt~dG~ 282 (1030)
..++.|..|.++++.+|+||+||.|. .||||.|... .....|.+++.+. +|++|+||..|+++|+++|+
T Consensus 27 ~~ia~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~ 95 (423)
T 3mvd_K 27 ARIAFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGD 95 (423)
T ss_dssp --CCCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSCS--SEEEEEECSSEEEEEETTSC
T ss_pred EEEECCCCCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCCC--CCEEEEECCCEEEEEECCCE
T ss_conf 68863776533166997199986998-7778999987--------5676876756889--84499507894899957994
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCEEECCCCCCCEEEEEECCCEEEEEEECCCEEEECC--CCCCCCCCCCCCCCCEEE
Q ss_conf 9999669999678789966--445579321599949999807983899940897999268--999998668888863110
Q 001683 283 VFCWGEGKDGRLGHKVNMD--VSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGH--NNHGADLVGERRSRSHWL 358 (1030)
Q Consensus 283 VysWG~Ns~GqLG~g~~~~--~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~--n~~~~G~LG~g~~~~~~~ 358 (1030)
||+||.|.+||||++...+ ...|.+|.... +|++|+||.+|++||+++|+||+||. | ..|+||.+.......
T Consensus 96 v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~~G~v~~wG~~~n--~~GqlG~~~~~~~~~ 171 (423)
T 3mvd_K 96 IYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLEDGRVFAWGSFRD--SHGNMGLTIDGNKRT 171 (423)
T ss_dssp EEEEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEETTSCEEEEECEEC--SSSEEESBTTBCEEE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEECCCCEEEEEECCCEEEEEECCCC--CCCCCCCCCCCCCCE
T ss_conf 99867899858999876786565775974799--78999848682899917996999769889--899867477888723
Q ss_pred CEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCC-----------CCCCCCEEEEECCCCEEEEEE
Q ss_conf 013202689962999996988059995189499971699855578898-----------786777275302798499997
Q 001683 359 PRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNL-----------QNVSQPKEVESLRGLKVKSVA 427 (1030)
Q Consensus 359 P~~i~~~l~~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~-----------~~~~~P~~V~~l~g~~I~~IA 427 (1030)
|..+ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.. .....|..+..+...+|++|+
T Consensus 172 p~~~---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~ 248 (423)
T 3mvd_K 172 PIDL---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIW 248 (423)
T ss_dssp EEES---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEE
T ss_pred EEEE---CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 4696---6998589995389749999269809996278678547776434454333453335687688406886279999
Q ss_pred ECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC--CEEEEEEEEECCCCCEEEEEECCCEEEEEECCCEE
Q ss_conf 1597389999500123444456992999956999976787997--42320685102457459998356434999479819
Q 001683 428 CGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGE--RKLLPTCVTRLVDFDFVQASCGRMLTVGLTGLGKV 505 (1030)
Q Consensus 428 cG~~Ht~aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~~--~~~~Pt~V~~l~~~~I~qIa~G~~htvaLT~dG~V 505 (1030)
||.+|++++.. .+|.||+||.|.+||||.+... ....|..+. ..+|++|+||..|+++|+++|+|
T Consensus 249 ~g~~~~~~~~~----------~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v 315 (423)
T 3mvd_K 249 ATNYCTFMRES----------QTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKC 315 (423)
T ss_dssp EETTEEEEEET----------TTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCE
T ss_pred ECCCEEEEEEC----------CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC---CCCEEEEECCCCEEEEEECCCCE
T ss_conf 79967999988----------999499974999876799998874146448707---88748997246769999589939
Q ss_pred EEEECCCCCCCCCCCCCCC--CEEEEECCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 9981898898899999886--01699534556417999847871168824982999937999999999998752003641
Q 001683 506 YTMGSAVHGQLGNPKAKDR--SITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVE 583 (1030)
Q Consensus 506 y~wG~N~~GQLG~g~~~~~--~P~~v~~~l~~~~V~~Ia~G~~Ht~aLTs~G~VytWG~n~~GQLG~G~~~~~~~Pt~V~ 583 (1030)
|+||.|.+||||.+..... .|..+.. +.. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|.
T Consensus 316 ~~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 393 (423)
T 3mvd_K 316 SVVGRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVV 393 (423)
T ss_dssp EEEECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECC-CCC-CEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 9997998888798986665468667214-799-77999768986999958998899799979898799997860576973
Q ss_pred C--CCCCEEEEEEECCCCCCEEEECC
Q ss_conf 2--35772577420588531131024
Q 001683 584 A--LRDRQVESVVCGSSITAAICLHK 607 (1030)
Q Consensus 584 ~--l~~~~V~~IacG~~hT~aI~~~k 607 (1030)
. +.+..|.+|+||.+||++|+.++
T Consensus 394 ~~~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 394 SKNTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp STTTTTCCEEEEEECSSEEEEEEECC
T ss_pred CCCCCCCEEEEEEECCCCEEEEECCC
T ss_conf 76647978999977888289997166
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=539.96 Aligned_cols=372 Identities=27% Similarity=0.407 Sum_probs=320.7
Q ss_pred CCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEECCEEEEE
Q ss_conf 58860585468994999848999994689998985567653123474662233689979999659879999809919999
Q 001683 207 YGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKEGEVFCW 286 (1030)
Q Consensus 207 ~Gs~~~~~l~~~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~ie~~~~~~I~~Ia~G~~hs~~Lt~dG~VysW 286 (1030)
.+..|.++++.+|.||+||.|. .||||.|... .....|++++.. .+|++|+||..|+++|+++|+||+|
T Consensus 15 ~~~~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~w 83 (413)
T 1a12_A 15 VKVSHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSF 83 (413)
T ss_dssp CCCCCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEE
T ss_pred HCCCCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCC--CCEEEEEECCCEEEEECCCCCEEEE
T ss_conf 2044204006898689977898-9837989986--------430465671688--9869998677758999479989998
Q ss_pred ECCCCCCCCCCCCC--CCCCCEEECCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCE-EECEEEE
Q ss_conf 66999967878996--64455793215999499998079838999408979992689999986688888631-1001320
Q 001683 287 GEGKDGRLGHKVNM--DVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSRSH-WLPRKLF 363 (1030)
Q Consensus 287 G~Ns~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~G~LG~g~~~~~-~~P~~i~ 363 (1030)
|.|.+||||++... ....|.+|... .+|++|+||.+|++||+++|+||+||.+....|+||.+..... ..|.++
T Consensus 84 G~n~~GqLG~~~~~~~~~~~P~~v~l~--~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v- 160 (413)
T 1a12_A 84 GCNDEGALGRDTSVEGSEMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV- 160 (413)
T ss_dssp ECCTTSTTCSCCCSTTGGGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE-
T ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCC--CCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-
T ss_conf 899988779888887534587475388--75899966887379984899489943776899863767866446678796-
Q ss_pred CCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCC-----------CCCCEEEEEC-----CCCEEEEEE
Q ss_conf 268996299999698805999518949997169985557889878-----------6777275302-----798499997
Q 001683 364 DTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQN-----------VSQPKEVESL-----RGLKVKSVA 427 (1030)
Q Consensus 364 ~~l~~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~~-----------~~~P~~V~~l-----~g~~I~~IA 427 (1030)
+...+|++|+||.+|+++|+++|+||+||.|.+||||++.... ...|+.+... ...+|++|+
T Consensus 161 --~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia 238 (413)
T 1a12_A 161 --QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF 238 (413)
T ss_dssp --CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEE
T ss_pred --CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEE
T ss_conf --189977999846761899858998898338988866887533345555455322446745763145666785489997
Q ss_pred ECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCC--CCEEEEEECCCEEEEEECCCEE
Q ss_conf 15973899995001234444569929999569999767879974232068510245--7459998356434999479819
Q 001683 428 CGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVD--FDFVQASCGRMLTVGLTGLGKV 505 (1030)
Q Consensus 428 cG~~Ht~aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~--~~I~qIa~G~~htvaLT~dG~V 505 (1030)
||.+|+++|+ .+|+||+||.|.+||||+++......|+.|..+.+ .+|++|+||..|+++|+++|+|
T Consensus 239 ~G~~hs~alt-----------~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v 307 (413)
T 1a12_A 239 CGAYFTFAIS-----------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKA 307 (413)
T ss_dssp EETTEEEEEE-----------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCE
T ss_pred ECCCEEEEEE-----------CCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECCCCE
T ss_conf 0788799996-----------89979998499876777999876356677010158873299995052458999079989
Q ss_pred EEEECCCCCCCCCCCCCC--CCEEEEECCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 998189889889999988--601699534556417999847871168824982999937999999999998752003641
Q 001683 506 YTMGSAVHGQLGNPKAKD--RSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTFVE 583 (1030)
Q Consensus 506 y~wG~N~~GQLG~g~~~~--~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLTs~G~VytWG~n~~GQLG~G~~~~~~~Pt~V~ 583 (1030)
|+||.|.+||||.+.... ..|..+.. +. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|.
T Consensus 308 ~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~ 384 (413)
T 1a12_A 308 YSLGRAEYGRLGLGEGAEEKSIPTLISR-LP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM 384 (413)
T ss_dssp EEEECCGGGTTCSCTTCCCEEEEEECCS-SS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECC-CC--CEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECC
T ss_conf 9864898886689998863667779226-67--62599977564799948997899228989878799988755374854
Q ss_pred C--CCCCEEEEEEECCCCCCEEEECCC
Q ss_conf 2--357725774205885311310244
Q 001683 584 A--LRDRQVESVVCGSSITAAICLHKS 608 (1030)
Q Consensus 584 ~--l~~~~V~~IacG~~hT~aI~~~kw 608 (1030)
. +.+..|.+|+||.+||++|+.++.
T Consensus 385 ~~~~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 385 GKQLENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp STTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 556589869999557882899981688
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=513.34 Aligned_cols=336 Identities=33% Similarity=0.569 Sum_probs=311.0
Q ss_pred CCCEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEECC-CEEEEC
Q ss_conf 8997999965987999980991999966999967878996644557932159994999980798389994089-799926
Q 001683 261 MLDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSG-EIYTWG 339 (1030)
Q Consensus 261 ~~~I~~Ia~G~~hs~~Lt~dG~VysWG~Ns~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG-~Vy~WG 339 (1030)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|++||+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 66469996187909999829989998699998889798655738878224689978999828450899988899899975
Q ss_pred CCCCCCCCCCCCCCCCEEECEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 89999986688888631100132026899629999969880599951894999716998555788987867772753027
Q 001683 340 HNNHGADLVGERRSRSHWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLR 419 (1030)
Q Consensus 340 ~n~~~~G~LG~g~~~~~~~P~~i~~~l~~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~ 419 (1030)
.| ..|+||++.......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|..+..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 99--886899899876461068414-689988999977046589738985999079987547798987755235743568
Q ss_pred CCEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 98499997159738999950012344445699299995699997678799742320685102457459998356434999
Q 001683 420 GLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGRMLTVGL 499 (1030)
Q Consensus 420 g~~I~~IAcG~~Ht~aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~qIa~G~~htvaL 499 (1030)
+.+|++|+||.+|+++|+ .+|+||+||.|.+||||+++......|..+..+...+|++|+||.+|+++|
T Consensus 172 ~~~i~~va~G~~hs~alt-----------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l 240 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVT-----------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 240 (406)
T ss_dssp TCCEEEEEECSSEEEEEE-----------TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEE
T ss_pred CCCEEEEECCCCEEEEEE-----------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEE
T ss_conf 973899964787399994-----------799889841798887788998776862784036896299999789818999
Q ss_pred ECCCEEEEEECCCCCCCCCCCCCC-CCEEEEECCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 479819998189889889999988-6016995345564179998478711688249829999379999999999987520
Q 001683 500 TGLGKVYTMGSAVHGQLGNPKAKD-RSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERET 578 (1030)
Q Consensus 500 T~dG~Vy~wG~N~~GQLG~g~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLTs~G~VytWG~n~~GQLG~G~~~~~~~ 578 (1030)
+++|+||+||.|.+||||.+.... ..|..+. .+.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...
T Consensus 241 ~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~-~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 319 (406)
T 4d9s_A 241 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS 319 (406)
T ss_dssp ETTCCEEEEECCTTSTTCSSSCCCEEEEEECG-GGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCEEEC-CCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 48998899638998878999876750567823-25899889998467879999599909993389988887899877746
Q ss_pred EEEECCCCCCEEEEEEECCCCCCEEEECCCCCC
Q ss_conf 036412357725774205885311310244456
Q 001683 579 PTFVEALRDRQVESVVCGSSITAAICLHKSISV 611 (1030)
Q Consensus 579 Pt~V~~l~~~~V~~IacG~~hT~aI~~~kwv~~ 611 (1030)
|++|..+.+..|++|+||.+|+++|+..+.++.
T Consensus 320 p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~ 352 (406)
T 4d9s_A 320 PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 352 (406)
T ss_dssp EEEECCGGGCCEEEEEECSSEEEEEETTSCEEE
T ss_pred CEEEECCCCCCEEEEEECCCEEEEEECCCCEEE
T ss_conf 779732679858999928994999948997899
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=487.63 Aligned_cols=332 Identities=28% Similarity=0.473 Sum_probs=228.2
Q ss_pred EEEECCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCC
Q ss_conf 99965987999980991999966999967878996644557932159994999980798389994089799926899999
Q 001683 266 NISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVNMDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGA 345 (1030)
Q Consensus 266 ~Ia~G~~hs~~Lt~dG~VysWG~Ns~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~ 345 (1030)
++..-..+.++|+.+|+||+||.|.+||||.+...+...|+++..+...+|++|+||..|+++|+++|+||+||.| ..
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~~ 82 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--AG 82 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--GG
T ss_pred CCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECC--CC
T ss_conf 4465743226688998699703899751898968664277760134678659998477739999589819998899--99
Q ss_pred CCCCCCCCCCEEECEEEECCCC-CCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 8668888863110013202689-962999996988059995189499971699855578898786777275302798499
Q 001683 346 DLVGERRSRSHWLPRKLFDTLD-GVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRGLKVK 424 (1030)
Q Consensus 346 G~LG~g~~~~~~~P~~i~~~l~-~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~g~~I~ 424 (1030)
|+||.+.......|..+..... ..++++|+||..|+++|+++|+||+||.|.+||||+++......|..++.+.+.+|+
T Consensus 83 GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 83 GRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp GTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEE
T ss_conf 88898996773377771101577325999876877499994899799972998986789987567587684366897399
Q ss_pred EEEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECC--CEEEEEECC
Q ss_conf 997159738999950012344445699299995699997678799742320685102457459998356--434999479
Q 001683 425 SVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDGERKLLPTCVTRLVDFDFVQASCGR--MLTVGLTGL 502 (1030)
Q Consensus 425 ~IAcG~~Ht~aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~qIa~G~--~htvaLT~d 502 (1030)
+|+||..|+++|+ .+|+||+||.|.+||||+++......|+.+..+...+|++|+||. .|+++|+++
T Consensus 163 ~va~G~~hs~alt-----------~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~ 231 (389)
T 3kci_A 163 DVAAGGAHSACVT-----------AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231 (389)
T ss_dssp EEEECSSEEEEEE-----------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETT
T ss_pred EEEECCCEEEEEE-----------CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEECCC
T ss_conf 9971758589994-----------89808994899888768999866045568504589839999976898589999059
Q ss_pred CEEEEEECCCCCCCCCCCCCC-CCEEEEECCCCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf 819998189889889999988-6016995345564179998478711688249829999379999999999987520036
Q 001683 503 GKVYTMGSAVHGQLGNPKAKD-RSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKNANGQLGLGDSQERETPTF 581 (1030)
Q Consensus 503 G~Vy~wG~N~~GQLG~g~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLTs~G~VytWG~n~~GQLG~G~~~~~~~Pt~ 581 (1030)
|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|++
T Consensus 232 G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~ 310 (389)
T 3kci_A 232 DTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQ 310 (389)
T ss_dssp TEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 979997399888779899888544679546-6899679994799879999589939998589998888999866208758
Q ss_pred ECCCCCCEEEEEEECCCCCCEEEECCCCCC
Q ss_conf 412357725774205885311310244456
Q 001683 582 VEALRDRQVESVVCGSSITAAICLHKSISV 611 (1030)
Q Consensus 582 V~~l~~~~V~~IacG~~hT~aI~~~kwv~~ 611 (1030)
|..+.+..|++|+||.+|+++++.++.++.
T Consensus 311 v~~l~~~~v~~ia~G~~h~~al~~~G~v~~ 340 (389)
T 3kci_A 311 VQGLQGKKVIAIATGSLHCVCCTEDGEVYT 340 (389)
T ss_dssp CGGGTTCCEEEEEECSSEEEEEETTCCEEE
T ss_pred ECCCCCCCEEEEEECCCEEEEECCCCCEEE
T ss_conf 514799988999944570999989998998
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=470.46 Aligned_cols=332 Identities=20% Similarity=0.284 Sum_probs=159.6
Q ss_pred CCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCEEECC--C----CC
Q ss_conf 12212588605854689949998489999946899989855676--------------5312347466223--3----68
Q 001683 202 LVTPTYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNK--------------TQVDALLPKLLES--A----VM 261 (1030)
Q Consensus 202 ~s~~s~Gs~~~~~l~~~G~Vy~WG~n~~~GqLG~G~~~~~~~~~--------------~~~~~~~P~~ie~--~----~~ 261 (1030)
+..++.|..|.++++.+|+||+||.|. .||||.+......... .......|.+++. + ..
T Consensus 69 i~~va~G~~Ht~alt~~G~v~~wG~n~-~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~ 147 (473)
T 3of7_A 69 IISFAVGGMHTLALDEESNVWSWGCND-VGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEG 147 (473)
T ss_dssp EEEEEECSSEEEEEETTCCEEEEECCT-TSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTT
T ss_pred EEEEEECCCEEEEEECCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
T ss_conf 899970787699991698499968998-8889998865333323456555675433444633467501343457754589
Q ss_pred CCEEEEEECCCEEEEEEECCEEEEEEC--CCCCCCCCCCCC--CCCCCEEECCCCCCCEEEEEECCCEEEEEEECCCEEE
Q ss_conf 997999965987999980991999966--999967878996--6445579321599949999807983899940897999
Q 001683 262 LDVQNISLGAKHAALVTKEGEVFCWGE--GKDGRLGHKVNM--DVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYT 337 (1030)
Q Consensus 262 ~~I~~Ia~G~~hs~~Lt~dG~VysWG~--Ns~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~ 337 (1030)
.+|++|+||..|+++|+++|+||+||. +..||||++... ....|.+|..+.+.+|++|+||.+|++||+++|+||+
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~ 227 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEE
T ss_conf 81899982688799994898499946996898754888877741447677552478887999963783899917992999
Q ss_pred ECCCCCCCCCCCCCCCCC----EEECEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCC----CC
Q ss_conf 268999998668888863----1100132026899629999969880599951894999716998555788987----86
Q 001683 338 WGHNNHGADLVGERRSRS----HWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQ----NV 409 (1030)
Q Consensus 338 WG~n~~~~G~LG~g~~~~----~~~P~~i~~~l~~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~----~~ 409 (1030)
||.| ..||||.+.... ...|..+. ..+|++|+||.+|+++|+++|+||+||.|.+||||++... ..
T Consensus 228 wG~n--~~GqLG~~~~~~~~~~~~~p~~~~----~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~ 301 (473)
T 3of7_A 228 WGNG--QQNQLGRKVMERFRLKTLDPRPFG----LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALV 301 (473)
T ss_dssp EECC--TTSTTSSCCCGGGTTTTCSCEECS----CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEE
T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCEECC----CCCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 7699--888889884454333543752127----7663899548975899916998899378989885888765688445
Q ss_pred CCCEEEEECCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC--------------CCEEEE
Q ss_conf 777275302798499997159738999950012344445699299995699997678799--------------742320
Q 001683 410 SQPKEVESLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDG--------------ERKLLP 475 (1030)
Q Consensus 410 ~~P~~V~~l~g~~I~~IAcG~~Ht~aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~--------------~~~~~P 475 (1030)
..|..|..+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||.+.. .....|
T Consensus 302 ~~P~~v~~~~~~~i~~ia~G~~hs~~lt-----------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P 370 (473)
T 3of7_A 302 TKPKRLALPDNVVIRSIAAGEHHSLILS-----------QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLP 370 (473)
T ss_dssp EEEEECCCCTTCCEEEEEECSSEEEEEE-----------TTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEE
T ss_pred ECCCCCCCCCCCCEEEEEECCCEEEEEE-----------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 4132125567863899986788699993-----------89829998789987418884446653100457860262167
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCC-CCC-CCEEEEEC-CCCCCCEEEEEECCCCEEEEE
Q ss_conf 685102457459998356434999479819998189889889999-988-60169953-455641799984787116882
Q 001683 476 TCVTRLVDFDFVQASCGRMLTVGLTGLGKVYTMGSAVHGQLGNPK-AKD-RSITVVEG-KLKEEFVKGISSGSYHVAVLT 552 (1030)
Q Consensus 476 t~V~~l~~~~I~qIa~G~~htvaLT~dG~Vy~wG~N~~GQLG~g~-~~~-~~P~~v~~-~l~~~~V~~Ia~G~~Ht~aLT 552 (1030)
+.+..+. +|++|+||.+|++||+++|+||+||.|.+||||.+. ... ..|.+|.. .+.+..|+.|+||..|++++.
T Consensus 371 ~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~ 448 (473)
T 3of7_A 371 TKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGG 448 (473)
T ss_dssp EECCSSC--CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEE
T ss_pred CCCCCCC--CEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEE
T ss_conf 0047877--53799857876999968984899628989888799977656378482256668972899951888599997
Q ss_pred C
Q ss_conf 4
Q 001683 553 S 553 (1030)
Q Consensus 553 s 553 (1030)
.
T Consensus 449 ~ 449 (473)
T 3of7_A 449 V 449 (473)
T ss_dssp E
T ss_pred E
T ss_conf 4
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=469.63 Aligned_cols=329 Identities=24% Similarity=0.352 Sum_probs=280.7
Q ss_pred CCEEEEEECCCEEEEEEECCEEEEEECCCCCCCCCCCC-CCCCCCEEECCCCCCCEEEEEECCCEEEEEEECCCEEEECC
Q ss_conf 99799996598799998099199996699996787899-66445579321599949999807983899940897999268
Q 001683 262 LDVQNISLGAKHAALVTKEGEVFCWGEGKDGRLGHKVN-MDVSCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGH 340 (1030)
Q Consensus 262 ~~I~~Ia~G~~hs~~Lt~dG~VysWG~Ns~GqLG~g~~-~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~ 340 (1030)
..+++|+||..|+++++++|+||+||.|.+||||++.. .....|.+|..+. .|++|+||..|+++|+++|+||+||.
T Consensus 24 ~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG~ 101 (423)
T 3mvd_K 24 AKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGC 101 (423)
T ss_dssp -----CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 2036886377653316699719998699877789999875676876756889--84499507894899957994998678
Q ss_pred CCCCCCCCCCCCCCC--EEECEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEEC--CCCCCCCCCCCCCCCCCEEEE
Q ss_conf 999998668888863--1100132026899629999969880599951894999716--998555788987867772753
Q 001683 341 NNHGADLVGERRSRS--HWLPRKLFDTLDGVRVSKVACGEWHTAIVSTSGQLFTYGD--GTFGVLGHGNLQNVSQPKEVE 416 (1030)
Q Consensus 341 n~~~~G~LG~g~~~~--~~~P~~i~~~l~~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~--n~~GqLG~g~~~~~~~P~~V~ 416 (1030)
| ..||||++.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||++.......|.+
T Consensus 102 n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~-- 174 (423)
T 3mvd_K 102 N--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPID-- 174 (423)
T ss_dssp C--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEE--
T ss_pred C--CCCCCCCCCCCCCCCCCCEEECC---CCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEE--
T ss_conf 9--98589998767865657759747---9978999848682899917996999769889899867477888723469--
Q ss_pred ECCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC-----------CCEEEEEEEEECCCCC
Q ss_conf 02798499997159738999950012344445699299995699997678799-----------7423206851024574
Q 001683 417 SLRGLKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHVDG-----------ERKLLPTCVTRLVDFD 485 (1030)
Q Consensus 417 ~l~g~~I~~IAcG~~Ht~aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g~~-----------~~~~~Pt~V~~l~~~~ 485 (1030)
.+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||++.. .....|..+......+
T Consensus 175 ~~~~~~i~~va~G~~hs~alt-----------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~ 243 (423)
T 3mvd_K 175 LMEGTVCCSIASGADHLVILT-----------TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243 (423)
T ss_dssp SSTTCCEEEEEECSSEEEEEE-----------TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCC
T ss_pred ECCCCCEEEEECCCCEEEEEE-----------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 669985899953897499992-----------698099962786785477764344543334533356876884068862
Q ss_pred EEEEEECCCEEEEE-ECCCEEEEEECCCCCCCCCCCCCC-CCEEEEECCCCCCCEEEEEECCCCEEEEECCCEEEEEECC
Q ss_conf 59998356434999-479819998189889889999988-6016995345564179998478711688249829999379
Q 001683 486 FVQASCGRMLTVGL-TGLGKVYTMGSAVHGQLGNPKAKD-RSITVVEGKLKEEFVKGISSGSYHVAVLTSGGSVYTWGKN 563 (1030)
Q Consensus 486 I~qIa~G~~htvaL-T~dG~Vy~wG~N~~GQLG~g~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLTs~G~VytWG~n 563 (1030)
|++|+||.+|++++ +.+|.||+||.|.+||||.+.... ..+.++.. ....|++|+||.+|+++|+++|+||+||.|
T Consensus 244 v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~--~~~~v~~ia~G~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 244 FEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT--ELKDIRHIAGGQHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE--CCCSEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred EEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEC--CCCCEEEEECCCCEEEEEECCCCEEEEECC
T ss_conf 799997996799998899949997499987679999887414644870--788748997246769999589939999799
Q ss_pred CCCCCCCCCCCC-CCEEEEECCCCCCEEEEEEECCCCCCEEEECCCCCCCC
Q ss_conf 999999999987-52003641235772577420588531131024445688
Q 001683 564 ANGQLGLGDSQE-RETPTFVEALRDRQVESVVCGSSITAAICLHKSISVGD 613 (1030)
Q Consensus 564 ~~GQLG~G~~~~-~~~Pt~V~~l~~~~V~~IacG~~hT~aI~~~kwv~~~d 613 (1030)
.+||||+++..+ ...|++|+.+.+ .|++|+||.+|+++|+.++-++.+.
T Consensus 322 ~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG 371 (423)
T 3mvd_K 322 EYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWG 371 (423)
T ss_dssp GGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCC-CEEEEECCCCEEEEECCCCCEEEEC
T ss_conf 8888798986665468667214799-7799976898699995899889979
No 10
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=464.81 Aligned_cols=329 Identities=26% Similarity=0.405 Sum_probs=157.5
Q ss_pred CCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEEEC
Q ss_conf 31221258860585468994999848999994689998985567653123474662233689979999659879999809
Q 001683 201 RLVTPTYGSPLIERKDILKDVMIWGEGVLGGDIGGAVDGSVSQNKTQVDALLPKLLESAVMLDVQNISLGAKHAALVTKE 280 (1030)
Q Consensus 201 ~~s~~s~Gs~~~~~l~~~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~ie~~~~~~I~~Ia~G~~hs~~Lt~d 280 (1030)
.+..++.|..|.++++.+|+||+||.|. .||||.+.... .....|+++.. ..+|++|+||..|+++|+++
T Consensus 60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~-~GqLG~~~~~~-------~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~ 129 (413)
T 1a12_A 60 DVVQAEAGGMHTVCLSKSGQVYSFGCND-EGALGRDTSVE-------GSEMVPGKVEL--QEKVVQVSAGDSHTAALTDD 129 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCT-TSTTCSCCCST-------TGGGSCEECCC--CSCEEEEEECSSEEEEEETT
T ss_pred CEEEEEECCCEEEEECCCCCEEEEECCC-CCCCCCCCCCC-------CCCCCCEEECC--CCCEEEEECCCCEEEEECCC
T ss_conf 8699986777589994799899988999-88779888887-------53458747538--87589996688737998489
Q ss_pred CEEEEEEC--CCCCCCCCCCCCCC-CCCEEECCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCC---
Q ss_conf 91999966--99996787899664-4557932159994999980798389994089799926899999866888886---
Q 001683 281 GEVFCWGE--GKDGRLGHKVNMDV-SCPKLVECLSGINVQSVSCGEFQTCALTKSGEIYTWGHNNHGADLVGERRSR--- 354 (1030)
Q Consensus 281 G~VysWG~--Ns~GqLG~g~~~~~-~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~G~LG~g~~~--- 354 (1030)
|+||+||. |.+||||++..... ..|.+| +...+|++|+||.+|+++|+++|+||+||.| ..||||.+...
T Consensus 130 G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n--~~GqLG~~~~~~~~ 205 (413)
T 1a12_A 130 GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCG--EQGQLGRVPELFAN 205 (413)
T ss_dssp SCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSCGGGTSS
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCCCEEEEEECCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCC
T ss_conf 9489943776899863767866446678796--1899779998467618998589988983389--88866887533345
Q ss_pred --------CEEECEEEECCC----CCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCC--
Q ss_conf --------311001320268----996299999698805999518949997169985557889878677727530279--
Q 001683 355 --------SHWLPRKLFDTL----DGVRVSKVACGEWHTAIVSTSGQLFTYGDGTFGVLGHGNLQNVSQPKEVESLRG-- 420 (1030)
Q Consensus 355 --------~~~~P~~i~~~l----~~~~Iv~IAcG~~HtlaLTsdG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~g-- 420 (1030)
....|..+.... ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|..|..+.+
T Consensus 206 ~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~ 285 (413)
T 1a12_A 206 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNST 285 (413)
T ss_dssp SCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTT
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCC
T ss_conf 55545532244674576314566678548999707887999968997999849987677799987635667701015887
Q ss_pred CEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCEEEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 84999971597389999500123444456992999956999976787-99742320685102457459998356434999
Q 001683 421 LKVKSVACGPWHTAAIVDIMVDRCKSNAIGGKLFTWGDADKGRLGHV-DGERKLLPTCVTRLVDFDFVQASCGRMLTVGL 499 (1030)
Q Consensus 421 ~~I~~IAcG~~Ht~aLte~~~~~~~~~~sdG~Ly~WG~n~~GQLG~g-~~~~~~~Pt~V~~l~~~~I~qIa~G~~htvaL 499 (1030)
.+|++|+||.+|+++|+ .+|+||+||.|.+||||++ +......|+.|..+. +|++|+||.+|++||
T Consensus 286 ~~v~~ia~G~~hs~al~-----------~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~al 352 (413)
T 1a12_A 286 KSWVGFSGGQHHTVCMD-----------SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAV 352 (413)
T ss_dssp CCEEEEEECSSEEEEEE-----------TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEE
T ss_pred CEEEEEECCCCEEEEEE-----------CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEEECCCEEEEE
T ss_conf 32999950524589990-----------79989986489888668999886366777922667--625999775647999
Q ss_pred ECCCEEEEEECCCCCCCCCCCCCC-CCEEEEECC-CCCCCEEEEEECCCCEEEEECCCE
Q ss_conf 479819998189889889999988-601699534-556417999847871168824982
Q 001683 500 TGLGKVYTMGSAVHGQLGNPKAKD-RSITVVEGK-LKEEFVKGISSGSYHVAVLTSGGS 556 (1030)
Q Consensus 500 T~dG~Vy~wG~N~~GQLG~g~~~~-~~P~~v~~~-l~~~~V~~Ia~G~~Ht~aLTs~G~ 556 (1030)
+++|+||+||.|.+||||.+.... ..|..+... +.+..|.+|+||.+|+++|+.+|+
T Consensus 353 t~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 353 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp ETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred ECCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 48997899228989878799988755374854556589869999557882899981688
Done!