Query 001684
Match_columns 1030
No_of_seqs 241 out of 1128
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 6E-164 1E-168 1523.4 85.3 830 161-1030 30-900 (900)
2 KOG1041 Translation initiation 100.0 8E-142 2E-146 1313.0 74.0 815 161-1030 42-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 4E-129 8E-134 1088.4 48.0 720 169-994 87-834 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 3.5E-98 8E-103 873.1 43.4 419 547-990 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.6E-91 3.5E-96 824.7 45.7 436 515-987 3-447 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.5E-84 3.2E-89 752.2 42.1 384 560-988 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.8E-70 4E-75 615.8 27.2 296 681-991 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 4.9E-46 1.1E-50 433.3 28.7 284 662-987 94-401 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 2E-22 4.4E-27 199.4 8.7 131 386-524 1-134 (135)
10 cd02825 PAZ PAZ domain, named 99.8 4.5E-19 9.8E-24 170.2 10.4 111 385-501 1-115 (115)
11 cd02846 PAZ_argonaute_like PAZ 99.8 2.8E-18 6E-23 164.8 11.3 110 386-501 2-114 (114)
12 cd02845 PAZ_piwi_like PAZ doma 99.7 1.3E-17 2.8E-22 159.8 9.4 104 386-501 2-114 (117)
13 PF08699 DUF1785: Domain of un 99.5 1.8E-14 4E-19 117.0 3.2 52 333-385 1-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.3 1.5E-12 3.2E-17 127.6 6.0 81 418-501 27-132 (135)
15 COG1431 Argonaute homolog, imp 99.3 8.2E-11 1.8E-15 134.2 16.7 297 621-988 355-668 (685)
16 cd02843 PAZ_dicer_like PAZ dom 98.5 2.1E-07 4.6E-12 88.3 6.2 65 420-486 39-105 (122)
17 PF08459 UvrC_HhH_N: UvrC Heli 90.3 1.2 2.6E-05 45.1 8.3 106 758-883 10-120 (155)
18 PF13032 DUF3893: Domain of un 89.9 0.65 1.4E-05 46.2 5.9 57 932-992 66-122 (138)
19 PRK11617 endonuclease V; Provi 88.6 8.9 0.00019 41.3 13.7 48 933-990 170-217 (224)
20 cd06559 Endonuclease_V Endonuc 83.2 38 0.00083 36.2 15.2 42 933-984 166-207 (208)
21 TIGR00194 uvrC excinuclease AB 77.9 16 0.00034 45.1 11.5 110 760-888 382-498 (574)
22 PRK14672 uvrC excinuclease ABC 69.8 37 0.0008 42.4 11.8 110 758-887 453-565 (691)
23 PRK12306 uvrC excinuclease ABC 65.2 52 0.0011 40.2 11.7 106 759-886 366-475 (519)
24 PRK14670 uvrC excinuclease ABC 64.9 62 0.0013 40.0 12.4 111 758-886 357-471 (574)
25 PRK14669 uvrC excinuclease ABC 62.4 42 0.0009 41.9 10.4 107 759-886 396-506 (624)
26 PRK00558 uvrC excinuclease ABC 57.0 54 0.0012 40.8 10.2 100 758-879 382-486 (598)
27 PRK14671 uvrC excinuclease ABC 55.9 76 0.0017 39.7 11.2 107 759-887 415-525 (621)
28 KOG1924 RhoA GTPase effector D 54.6 26 0.00056 43.5 6.5 27 162-190 623-649 (1102)
29 PRK14667 uvrC excinuclease ABC 53.3 94 0.002 38.4 11.3 106 759-886 361-470 (567)
30 PRK14668 uvrC excinuclease ABC 50.0 73 0.0016 39.5 9.7 100 759-880 375-479 (577)
31 COG1515 Nfi Deoxyinosine 3'end 49.1 3.4E+02 0.0075 29.1 13.0 36 944-986 176-211 (212)
32 PF04493 Endonuclease_5: Endon 47.5 83 0.0018 33.6 8.4 32 946-983 175-206 (206)
33 PRK14666 uvrC excinuclease ABC 45.3 1.4E+02 0.0031 37.6 11.0 100 758-878 471-571 (694)
34 PF00763 THF_DHG_CYH: Tetrahyd 39.3 1.1E+02 0.0023 29.6 7.1 67 665-734 17-85 (117)
35 KOG1924 RhoA GTPase effector D 37.0 34 0.00074 42.5 3.9 7 461-467 861-867 (1102)
36 COG0322 UvrC Nuclease subunit 35.2 2.8E+02 0.006 34.5 11.3 107 759-886 379-486 (581)
37 PRK14185 bifunctional 5,10-met 30.5 1.8E+02 0.0038 32.9 8.0 67 666-734 19-87 (293)
38 PRK14192 bifunctional 5,10-met 30.3 2E+02 0.0044 32.2 8.6 62 678-742 33-99 (283)
39 PRK14187 bifunctional 5,10-met 27.9 2.4E+02 0.0052 31.9 8.5 55 678-734 32-88 (294)
40 PRK14171 bifunctional 5,10-met 27.3 2.4E+02 0.0052 31.8 8.3 55 677-733 31-87 (288)
41 PRK14173 bifunctional 5,10-met 26.6 2.6E+02 0.0056 31.5 8.4 63 677-741 28-94 (287)
42 PRK14184 bifunctional 5,10-met 26.5 2.5E+02 0.0054 31.6 8.3 63 677-741 30-96 (286)
43 PRK14180 bifunctional 5,10-met 25.5 2.6E+02 0.0056 31.5 8.1 55 678-734 31-87 (282)
44 PRK14178 bifunctional 5,10-met 25.2 3E+02 0.0065 30.9 8.6 63 676-740 24-90 (279)
45 PRK14176 bifunctional 5,10-met 24.7 3.1E+02 0.0067 30.9 8.5 61 678-740 38-102 (287)
46 PRK14181 bifunctional 5,10-met 24.5 3E+02 0.0065 31.0 8.4 55 677-733 25-81 (287)
47 PRK14186 bifunctional 5,10-met 24.2 2.9E+02 0.0062 31.3 8.3 62 678-741 32-97 (297)
48 PRK14183 bifunctional 5,10-met 24.1 2.8E+02 0.0062 31.1 8.1 54 678-733 31-86 (281)
49 PRK14188 bifunctional 5,10-met 24.0 3E+02 0.0065 31.2 8.4 55 678-734 32-88 (296)
50 PRK10792 bifunctional 5,10-met 23.9 2.8E+02 0.006 31.3 8.0 62 678-741 33-98 (285)
51 PLN02516 methylenetetrahydrofo 23.8 3.2E+02 0.0068 31.0 8.5 56 677-734 38-95 (299)
52 PRK14177 bifunctional 5,10-met 23.4 3.2E+02 0.007 30.7 8.4 62 678-741 33-98 (284)
53 PLN02616 tetrahydrofolate dehy 22.9 3.1E+02 0.0068 31.9 8.3 55 677-733 102-158 (364)
54 PLN02897 tetrahydrofolate dehy 22.8 3.1E+02 0.0066 31.7 8.2 56 677-734 85-142 (345)
55 PRK14168 bifunctional 5,10-met 22.4 3.1E+02 0.0068 31.0 8.1 56 677-734 32-89 (297)
56 PRK14174 bifunctional 5,10-met 22.4 3.3E+02 0.0071 30.9 8.3 55 678-734 31-87 (295)
57 PF09373 PMBR: Pseudomurein-bi 22.2 91 0.002 23.0 2.6 24 812-836 10-33 (33)
58 PRK14166 bifunctional 5,10-met 22.0 3.1E+02 0.0068 30.8 7.9 55 677-733 29-85 (282)
59 PRK14169 bifunctional 5,10-met 21.6 3.4E+02 0.0073 30.6 8.1 62 677-740 29-94 (282)
60 PRK14193 bifunctional 5,10-met 20.4 3.6E+02 0.0078 30.3 8.0 55 678-734 32-88 (284)
61 PRK14194 bifunctional 5,10-met 20.2 3.6E+02 0.0078 30.6 8.0 54 678-733 33-88 (301)
62 PRK00766 hypothetical protein; 20.1 1.6E+02 0.0034 31.2 4.8 35 945-986 152-186 (194)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=6.4e-164 Score=1523.42 Aligned_cols=830 Identities=33% Similarity=0.590 Sum_probs=698.0
Q ss_pred cccccCCCCCCCCCCceEEEEeeEEEEeeC-CCCcEEEEEEEECcC-----CCHHHHHHHHHHHHHHhhcccCCCceeec
Q 001684 161 ALVAARRPDAGGVEGAVISLLANHFLVQLD-PSQRIFHYNVEMSPS-----PSKEVARLIKQKLVEENSSMLSGAYPAFD 234 (1030)
Q Consensus 161 ~~~~p~RP~~Gt~~G~~I~L~tN~F~v~~~-~~~~iy~YdV~i~P~-----~~k~~~r~i~~~l~~~~~~~~~~~~~~yD 234 (1030)
...++.|||||+ .|++|.|+||||+|.+. ++..||||||+|+|+ .+++.++.|+++++++.+..+.+..+|||
T Consensus 30 ~~~~~~RPg~Gt-~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~D 108 (900)
T PLN03202 30 KRLPMARRGFGS-KGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYD 108 (900)
T ss_pred ccccCCCCCCCC-CCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeec
Confidence 346889999999 99999999999999975 578899999999974 23566788888888775444655578999
Q ss_pred CCceeeeccccCCCceEEEEEeccCCCCCC----CC--CCch--h--hhhhcccCCcEEEEEEEeeeeechHHHHHhhcc
Q 001684 235 GRKNIYSPVEFENDRLEFFVSLPIPTSKSV----LP--SGEL--K--ELIHKQHQLKLFRINIKLVSKYDGKELSRYLSK 304 (1030)
Q Consensus 235 G~~~LyS~~~L~~~~~~~~V~l~~~~~~~~----~~--~~~~--~--~~~~~~~~~~~~~V~Ik~v~~i~l~~L~~~l~~ 304 (1030)
|+++|||+.+|+.+..++.|++.......+ ++ +++. + ...+...+++.|+|+|+++++|++.+|.+||.+
T Consensus 109 g~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~ 188 (900)
T PLN03202 109 GEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRG 188 (900)
T ss_pred CccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcC
Confidence 999999999999866677787752100000 00 0000 0 000012357889999999999999999999998
Q ss_pred CCCCCCCCchhHHHHHHHHHccCCCCC-cccccccccCCCCCCccccCCcEEEEeceeEeEeeeccceeeeeccccceee
Q 001684 305 EDNDWIPLPQDYLHALDVVLRENPSEK-CIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFH 383 (1030)
Q Consensus 305 ~~~d~~~~~~e~iq~Lniilr~~~~~~-~~~vGrsfF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~~l~LniDvs~~aF~ 383 (1030)
...+ .+.++|||||+|||+.++.. ++.+||+||.+......++++|+|+|+||++|||+++++|+||||+++++|+
T Consensus 189 ~~~~---~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 189 QESE---NSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred CCCC---CcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 7543 67899999999999998654 8899999998654445578999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhhhhhhhhhhcCCCChhhHHHHHHhcceeEEEEeeeccceeEEEeecccCCCccceeecCC------
Q 001684 384 ESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRD------ 457 (1030)
Q Consensus 384 ~~~~l~d~l~~~l~~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~h~~~~k~~rI~gi~~~~a~~~~F~~~d------ 457 (1030)
++++|+|+|.++.+.. .....++.+++++|+|++|.++|. +++|+|.||++..+++.+|+.++
T Consensus 266 ~~~~l~~~l~~~~~~~---------~~~~~~~~~~~~~lkGl~V~t~~~--~k~yrI~~i~~~~a~~~~F~~~~~~~~~~ 334 (900)
T PLN03202 266 QPGPVVDFLIANQNVR---------DPFQIDWSKAKRMLKNLRVKVSPS--NQEYKITGLSEKPCKEQTFSLKQRNGNGN 334 (900)
T ss_pred cCCcHHHHHHHhcCcC---------CccchhHHHHHHHhcCCEEEEecC--CceEEEeeccCCCCcceEEEcccCCcccc
Confidence 9999999998865421 111234567999999999999995 47899999999999999997321
Q ss_pred ---CCceeHHHHHHhhcCcccccC-CCceEEec-CCCcccccccceeeccCccccCCCCHHHHHHHHHhccCCHHHHHHH
Q 001684 458 ---GKNIRLLSYFKDHYNYNIQFR-NLPCLQIS-RSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAM 532 (1030)
Q Consensus 458 ---G~~iSV~dYFk~~Yni~L~~p-~lPlv~vg-~~k~~ylP~Elc~I~~gQ~~~~kLs~~q~~~mik~a~~~P~~R~~~ 532 (1030)
|++|||+|||+++||++|+|| ++|||++| ..+++|||||||.|+|||+++++|++.|+++||++|+.+|.+|.+.
T Consensus 335 ~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~ 414 (900)
T PLN03202 335 EVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKV 414 (900)
T ss_pred cCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHH
Confidence 358999999999999999996 99999999 5678999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCcccccceEEeccceEeeeEEecCCceecCCCCccccccCCcCCccccccccccccccccceeEEE
Q 001684 533 IDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALL 612 (1030)
Q Consensus 533 I~~~~~~~~~~~~~~~l~~fGi~I~~~~~~V~gRvL~pP~I~yg~~~~~~~~~p~~~~G~Wnl~~~~f~~~~~l~~W~vl 612 (1030)
|.++++.+... .+++|++|||+|+.+|++|+||+|+||+|.|+++.. ..|. +|+||+++.+|+.++.+++|+|+
T Consensus 415 i~~~~~~~~~~-~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~---~~p~--~g~Wn~~~~kf~~~~~l~~W~vv 488 (900)
T PLN03202 415 LTDALKSSNYD-ADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGED---FFPR--NGRWNFNNKKLVEPTKIERWAVV 488 (900)
T ss_pred HHHHHHHhCCC-CchHHHHCCcEecCCceEEeEEEcCCceeecCCCcc---cCCC--CCceecCCCEecCCCccceEEEE
Confidence 99988776553 678999999999999999999999999999987642 3566 89999999999999999999999
Q ss_pred EeCCCccccccHHHHHHHHHHHHHHcCccccCCcccccccccccccCChhHHHHHHHHHHHHhcCCCcEEEEEEecC-Cc
Q 001684 613 SFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERK-HK 691 (1030)
Q Consensus 613 ~~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~-~~ 691 (1030)
++.+. ..+++|++.|.+.|+.+||.+..+..+.............+.++.+++.+.+.....++|||||||++ +.
T Consensus 489 ~~~~~----~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~ 564 (900)
T PLN03202 489 NFSAR----CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNS 564 (900)
T ss_pred EecCc----hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCc
Confidence 88653 25899999999999999999986543211100000011235688888888876656789999999975 55
Q ss_pred c-HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhhcCCceeeecCCCCCCCCCccCCCCCeEEEEEEecCC
Q 001684 692 G-YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHP 770 (1030)
Q Consensus 692 ~-Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~ip~~~~~~~~tMiiG~DVsHp 770 (1030)
+ |+.||++||++.||+||||... +.++||++|||||||+||||+||.+..+.+..+| ++.+.+|||||+||+||
T Consensus 565 ~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~--~~~~~~tMivG~DVtHp 639 (900)
T PLN03202 565 DIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIP--LVSKVPTIILGMDVSHG 639 (900)
T ss_pred chHHHHHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCc--cccCCCeEEEEEEeecC
Confidence 6 9999999999999999999653 3478999999999999999999998654444567 55677999999999999
Q ss_pred CCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeeeecH---------hhHHHHHHHHHHHHc-CCCCcEEEEEeCC
Q 001684 771 HPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDL---------GVMVGELLDDFYHEL-NKLPRRIIFFRDG 840 (1030)
Q Consensus 771 ~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~l---------~~~~~~~L~~f~~~~-~~lP~~IIiYRDG 840 (1030)
+++....|||||||||+|++.+++|.+.++.|.+++|+|++| ++|+.++|+.|++.+ +.+|++|||||||
T Consensus 640 ~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDG 719 (900)
T PLN03202 640 SPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDG 719 (900)
T ss_pred CCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecC
Confidence 988655799999999999767899999999999999999986 789999999999865 6999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhC-CCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCCCeeeeccccccCCcc
Q 001684 841 VSETQFYKVLQEELQSIREACSRF-PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREF 919 (1030)
Q Consensus 841 VSEgQ~~~Vl~~Ev~~Ik~a~~~~-~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~ 919 (1030)
||||||.+|+++|+++|++||+++ ++|+|+||||||+||||+|||+.+ +.+||+||||||++||+|..|
T Consensus 720 VseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~----------~~~N~~pGTvVD~~it~p~~~ 789 (900)
T PLN03202 720 VSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG----------SPDNVPPGTVVDNKICHPRNN 789 (900)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC----------CCCCCCCceEeccccccCCcc
Confidence 999999999999999999999999 789999999999999999999863 468999999999999999999
Q ss_pred eEEEeecCCccccccceeEEEEeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhcccccccCCccccc
Q 001684 920 DFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLM 999 (1030)
Q Consensus 920 dFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~~~~~~~~ 999 (1030)
|||||||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||...+.++++
T Consensus 790 dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~ 869 (900)
T PLN03202 790 DFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETS 869 (900)
T ss_pred eEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999854332222
Q ss_pred CCCcccccCCCCCCCCCccccccccCCeeeC
Q 001684 1000 GSSSAICRAAPPKAAPLPKLSENVKKLMFYC 1030 (1030)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~l~~~~~~~M~y~ 1030 (1030)
++.+++++....+...+.+||++++++||||
T Consensus 870 ~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 870 SSHGGITSAGAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred ccccccCCCCccccccccccchhhcCCeeeC
Confidence 2222222222222446788999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-142 Score=1313.05 Aligned_cols=815 Identities=36% Similarity=0.620 Sum_probs=686.5
Q ss_pred cccccCCCCCCCCCCceEEEEeeEEEEeeC-CCCc-EEEEEEEECcC-CCHHHHH-HHHHHHHHH-hhcccCCCceeecC
Q 001684 161 ALVAARRPDAGGVEGAVISLLANHFLVQLD-PSQR-IFHYNVEMSPS-PSKEVAR-LIKQKLVEE-NSSMLSGAYPAFDG 235 (1030)
Q Consensus 161 ~~~~p~RP~~Gt~~G~~I~L~tN~F~v~~~-~~~~-iy~YdV~i~P~-~~k~~~r-~i~~~l~~~-~~~~~~~~~~~yDG 235 (1030)
....+.||+.|+ .|++|.|.+|||.+.++ ++.. ++||+|++.++ ..+..++ .++..+... ....|++..++|||
T Consensus 42 ~~~~~~rp~~~~-~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg 120 (876)
T KOG1041|consen 42 VRFPMNRPGGGT-KGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDG 120 (876)
T ss_pred ccccccCCCCCc-cceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccC
Confidence 456788999996 99999999999998775 4555 99999999998 3344443 444444443 22335666678999
Q ss_pred CceeeeccccCC--CceEEEEEeccCCCCCCCCCCchhhhhhcccCCcEEEEEEEeeeeechHHHHHhhccCCCCCCCCc
Q 001684 236 RKNIYSPVEFEN--DRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLP 313 (1030)
Q Consensus 236 ~~~LyS~~~L~~--~~~~~~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Ik~v~~i~l~~L~~~l~~~~~d~~~~~ 313 (1030)
+++|||..+++. .+.+|.+..+ . + ...|++.|++++.+.+..+..++.+.... .+
T Consensus 121 ~~~lyt~~~~~~~~~~~~~~~~~~---------~-~----------~~~~~~~ik~~~~~~~~~~~~~~~~~~~~---~~ 177 (876)
T KOG1041|consen 121 QKTLYTKLELPEGVVTLDFDVISP---------K-E----------WKKFKVSIKKVSEVVLTKLNGFIYTRGEN---AP 177 (876)
T ss_pred CceeEeccccccccceEEEEecCC---------C-C----------CcceEEEEEecccccccCccccccCcccc---Cc
Confidence 999999777773 3333444332 1 1 11199999999988888888777765433 68
Q ss_pred hhHHHHHHHHHccCCCCC-cccccccccCCCCCCccccCCcEEEEeceeEeEeeeccceeeeeccccceeeccCChHHHH
Q 001684 314 QDYLHALDVVLRENPSEK-CIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYL 392 (1030)
Q Consensus 314 ~e~iq~Lniilr~~~~~~-~~~vGrsfF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~~l~LniDvs~~aF~~~~~l~d~l 392 (1030)
.+++|+|++++++.++.. +..+|++||.........+++|.|+|.||++|+|+++++++||+|+++++|+++++|.+++
T Consensus 178 ~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l 257 (876)
T KOG1041|consen 178 RDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFL 257 (876)
T ss_pred hhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHH
Confidence 899999999999999776 9999999998633334458999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhcCCCChhhHHHHHHhcceeEEEEeeeccceeEEEeecccCCCccceeecCC--CCceeHHHHHHhh
Q 001684 393 QKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRD--GKNIRLLSYFKDH 470 (1030)
Q Consensus 393 ~~~l~~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~h~~~~k~~rI~gi~~~~a~~~~F~~~d--G~~iSV~dYFk~~ 470 (1030)
.++++... +.+.......+++.|+||+|.++|++.++.|+|.+++..++.+.+|+.++ |.++||+|||+++
T Consensus 258 ~~~~~~~~-------~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~k 330 (876)
T KOG1041|consen 258 KKILEIKT-------RAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEK 330 (876)
T ss_pred HhhhcCcc-------cccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHh
Confidence 99987541 22222222339999999999999965566799999999999999999555 6889999999999
Q ss_pred cCcccccCCCceEEec-CCCcccccccceeeccCccccC-CCCHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCCCCCCc
Q 001684 471 YNYNIQFRNLPCLQIS-RSKPCYLPMELCMICEGQKFLG-KLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQ 548 (1030)
Q Consensus 471 Yni~L~~p~lPlv~vg-~~k~~ylP~Elc~I~~gQ~~~~-kLs~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~~ 548 (1030)
||++|+||++|||++| .++..|+|||+|.|+||||+.+ +|++.|+++|+|.+++.|++|.+.|.++++...+. .+++
T Consensus 331 y~~~Lkyp~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~-~d~~ 409 (876)
T KOG1041|consen 331 YNITLKYPDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKL-SNPY 409 (876)
T ss_pred cCccccCCCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccc-cchh
Confidence 9999999999999999 5677899999999999999998 99999999999999999999999999999988777 4999
Q ss_pred ccccceEEeccceEeeeEEecCCceecCCCCccccccCCcCCccccccccccccccccceeEEEEeCCCccccccHHHHH
Q 001684 549 GREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFI 628 (1030)
Q Consensus 549 l~~fGi~I~~~~~~V~gRvL~pP~I~yg~~~~~~~~~p~~~~G~Wnl~~~~f~~~~~l~~W~vl~~~~~~~~~~~~~~f~ 628 (1030)
|++|||.|.++|+.|+||+||||.|.|+++. ....|. .|.|++++++|++++.+..|+|++|.+.. +... +.|+
T Consensus 410 l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~--~~~~p~--~g~~~~~~k~~~~~~~i~~wavv~f~~~~-~~~~-~~f~ 483 (876)
T KOG1041|consen 410 LKEFGIIVVSEPTQVEGRVLPPPKLKFGGNE--MPKNPT--PGTWFMRNKKFVKPAKIKSWAVVNFSNSE-TLRQ-KQFV 483 (876)
T ss_pred HHhcCeEEecccccccccccCCceeeccCCC--CccCCC--cCccccccCcccccceEEEEEEEEecccc-cccH-HHHH
Confidence 9999999999999999999999999999871 123455 89999999999999999999999999862 3333 8999
Q ss_pred HHHHHHHHHcCccccCCcccccccccccccCChhHHHHHHHHHHHHh--cCCCcEEEEEEecCCcc-HHHHHHHHhhccC
Q 001684 629 CQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAA--SNNLQLLICVMERKHKG-YADLKRIAETSVG 705 (1030)
Q Consensus 629 ~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~--~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~G 705 (1030)
++|.+.|+..||.|.. +.. +.. ....++..++.+.... ..++++++||++++..+ |+.||++++...|
T Consensus 484 ~~L~~~c~~~Gm~i~~-~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e~t~~g 554 (876)
T KOG1041|consen 484 DELIKICKDKGMEIKR-PRK---WAP-----TEESLEDMITEKSSMEKAAAGVQLVFIILPEKNPDVHDELKYIEETVGG 554 (876)
T ss_pred HHHHHHHHHcCccccc-ccc---cCc-----ccchhHHHHHHHHhhhccCCCceEEEEEECCCCcchhHHHHHHHHHhcC
Confidence 9999999999999975 332 222 1234555444443322 35789999999999888 9999999999999
Q ss_pred eeeEeEeeccccCcchHHHHHHHHHHHhhcCCceeeecCCCCCCCCCccCCCCCeEEEEEEecCCCCCCCC--CCeEEEE
Q 001684 706 VVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDF--SPSVAAV 783 (1030)
Q Consensus 706 I~TQci~~~t~~k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~ip~~~~~~~~tMiiG~DVsHp~~~~~~--~pSiaav 783 (1030)
|+||||..+++.+..+||++||+||||+||||+|+.|..+....+| ....+|||||+||+||++++.. .||||||
T Consensus 555 i~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~---~~~~ptl~IG~dVsHp~~~~~~~~~PSiagv 631 (876)
T KOG1041|consen 555 LTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP---KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGV 631 (876)
T ss_pred ceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc---cCCCCeEEEEEeeeCCCcCCCcCCCccEEEE
Confidence 9999999999999889999999999999999999998764322232 2468899999999999998765 5999999
Q ss_pred EEeecCCCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHHcCCCCcEEEEEeCCCChhHHHHHHHHHHHHHHHHHhh
Q 001684 784 VGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSR 863 (1030)
Q Consensus 784 VaS~d~~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~~~~lP~~IIiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~ 863 (1030)
|+|+|| ..++|.+.+++|.+++|+|+++.+|+.++|..|++.++.+|++|||||||||||||.+|+++|+.+|++||..
T Consensus 632 v~s~~~-~~~~y~g~~~~Q~~r~e~i~~~~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~ 710 (876)
T KOG1041|consen 632 VYNLDW-HPQKFAGFVRFQKSRQEVIQDLGEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKK 710 (876)
T ss_pred Eecccc-cchhhcceEEEecCChhhhcchHHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHH
Confidence 999998 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCCCeeeeccccccCCcceEEEeecCCccccccceeEEEEe
Q 001684 864 F-PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILW 942 (1030)
Q Consensus 864 ~-~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~ 942 (1030)
+ ++|.|+||||||+||||||||+.+..+ .+++..+|+|||||||+.||||.++|||||||.++|||+||+||+||+
T Consensus 711 ~~~~y~P~it~Iv~qKrHhtR~F~~~~~~---~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~ 787 (876)
T KOG1041|consen 711 LQEGYNPKITVIVAQKRHHTRLFAAELSK---DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLY 787 (876)
T ss_pred hCCCCCCceEEEEEEcccceeeecccCCC---CccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEe
Confidence 9 899999999999999999999988762 122367999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhccccccc--CCcccccCCCcccccCCCCCCCCCcccc
Q 001684 943 DDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLER--SESATLMGSSSAICRAAPPKAAPLPKLS 1020 (1030)
Q Consensus 943 De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1020 (1030)
||+++++|+||+|||.|||+|+||+++||||+|+||||++|+|||.+.+. .+++.+.+..+. ....+.....+.++|
T Consensus 788 dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~ 866 (876)
T KOG1041|consen 788 DDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQSI-VDLDALNSEEGYKEK 866 (876)
T ss_pred CCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCcccccc-cccchhhhhhHHHhh
Confidence 99999999999999999999999999999999999999999999988321 111111111111 122222345677899
Q ss_pred ccccCCeeeC
Q 001684 1021 ENVKKLMFYC 1030 (1030)
Q Consensus 1021 ~~~~~~M~y~ 1030 (1030)
.++.++||||
T Consensus 867 ~~~~~~~f~a 876 (876)
T KOG1041|consen 867 AGLFGTRFNA 876 (876)
T ss_pred hcccceEEeC
Confidence 9999999998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.5e-129 Score=1088.40 Aligned_cols=720 Identities=25% Similarity=0.446 Sum_probs=623.3
Q ss_pred CCCCCCCceEEEEeeEEEEeeCCCCcEEEEEEEECcCCCHHHHHHHHHHHHHHhhcccCCCceeecCCceeeeccccCCC
Q 001684 169 DAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFEND 248 (1030)
Q Consensus 169 ~~Gt~~G~~I~L~tN~F~v~~~~~~~iy~YdV~i~P~~~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~~~LyS~~~L~~~ 248 (1030)
..|+ .|.+|+|.||||++...|++.||||+|+|+|+... ++++.+++..|.+++| +..+|||. +||.+.+|+.+
T Consensus 87 KtGs-sG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves---~rlR~~~L~~h~~lig-~~~~FDG~-iLfl~~k~eq~ 160 (845)
T KOG1042|consen 87 KTGS-SGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVES---RRLREALLYNHTDLIG-KGYAFDGT-ILFLKEKFEQK 160 (845)
T ss_pred ccCC-CCceEEEEeceeeeccCCCcEEEEEEEeecccccc---HHHHHHHHHHhHhhhc-cceeecce-eehhhHHHhhh
Confidence 3688 99999999999999999999999999999998653 5677889999988886 45799995 99999999754
Q ss_pred ceEEEEEeccCCCCCCCCCCchhhhhhcccCCcEEEEEEEeeeeechHHHHHhhccCCCCCCCCchhHHHHHHHHHccCC
Q 001684 249 RLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENP 328 (1030)
Q Consensus 249 ~~~~~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Ik~v~~i~l~~L~~~l~~~~~d~~~~~~e~iq~Lniilr~~~ 328 (1030)
-.+ .|+ .++.+..++|+||+++.+.. .++++||++|+|||...
T Consensus 161 ~te-l~~--------------------ks~~ge~i~I~ik~~~~~~~----------------t~p~~iqv~NlI~RR~~ 203 (845)
T KOG1042|consen 161 QTE-LVS--------------------KSRDGELIKITIKLTNELPS----------------TDPQCIQVFNLILRRSM 203 (845)
T ss_pred hhe-eec--------------------ccCCCceEEEEEEEeccccC----------------CChhHHHHHHHHHHHHH
Confidence 322 121 23567889999999988753 35789999999999975
Q ss_pred -CCCcccccccccCCCCCCcccc-CCcEEEEeceeEeEeeeccceeeeeccccceeeccCChHHHHHHHHhhhhhhhhhh
Q 001684 329 -SEKCIPVGRSLYSSSMGGAKEI-GGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRK 406 (1030)
Q Consensus 329 -~~~~~~vGrsfF~~~~~~~~~l-g~Gle~w~Gf~~SvR~~~~~l~LniDvs~~aF~~~~~l~d~l~~~l~~~~~~~~~~ 406 (1030)
.+++.++||+||++.. +.++ ...+++|+||.+|||..+..++|+.|++|++.+ ..++.|+|......
T Consensus 204 k~L~L~qigRnyynp~~--~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR-~ETvy~~m~~~~~~-------- 272 (845)
T KOG1042|consen 204 KGLNLTQIGRNYYDPRA--KIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMR-TETVYDIMRSCQHN-------- 272 (845)
T ss_pred hhccHHHhhhccCCCCc--ccccccccceecCcchhHHHHhhhceeeehhhhhhHhh-hhHHHHHHHHHhhC--------
Confidence 5678999999999864 3455 568999999999999999999999999999984 77888888776542
Q ss_pred cCCCChhhHHHHHHhcceeEEEEeeeccceeEEEeecccCCCccceeecCCCCceeHHHHHHhhcCcccccCCCceEEec
Q 001684 407 TRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQIS 486 (1030)
Q Consensus 407 ~r~l~~~~~~~l~~~LkGl~V~~~h~~~~k~~rI~gi~~~~a~~~~F~~~dG~~iSV~dYFk~~Yni~L~~p~lPlv~vg 486 (1030)
+++..+++++.+.|+.|.+. +||++|||++|+|..++..+|..+|| +||+.|||+++|||+|++.+||+|...
T Consensus 273 ----~~~~qe~~~~~~~glivLT~--YNNktyriddvD~~~tP~stF~k~dg-eIs~veYyk~qYni~I~dl~QPlliS~ 345 (845)
T KOG1042|consen 273 ----TQRFQETVNKNVIGLIVLTR--YNNKTYRIDDVDFSQTPLSTFKKDDG-EISFVEYYKKQYNIEITDLNQPLLISE 345 (845)
T ss_pred ----HHHHHHHHHHHhcceEEEEe--cCCceeeeeccccCcCccceeeecCc-eeeHhHHHHHhcCeEEeeCCcceEecc
Confidence 13567889999999988655 58899999999999999999986666 899999999999999999999999874
Q ss_pred -C--------CCcccccccceeeccCccccCCCCHHHHHH------HHHhccCCHHHHHHHHHHhhcCCCCCC-CCCccc
Q 001684 487 -R--------SKPCYLPMELCMICEGQKFLGKLSDDQTAR------ILKMGCQRPKERKAMIDGVMRGPVGPT-SGNQGR 550 (1030)
Q Consensus 487 -~--------~k~~ylP~Elc~I~~gQ~~~~kLs~~q~~~------mik~a~~~P~~R~~~I~~~~~~~~~~~-~~~~l~ 550 (1030)
+ ....++.||||+++ +|+|+++++ |.+++...|++|...+..+...+.... .-+.|+
T Consensus 346 ~k~K~~~g~~~q~~~lIPELc~~T-------GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr 418 (845)
T KOG1042|consen 346 PKDKRPKGEPPQLAMLIPELCFLT-------GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELR 418 (845)
T ss_pred CcccCCCCCCccceeeehhhhhcc-------CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 1 23579999999985 899999975 667899999999999999877654432 335689
Q ss_pred ccceEEeccceEeeeEEecCCceecCCCCccccccCCcCCcccc--ccccccccccccceeEEEEeCCCccccccHHHHH
Q 001684 551 EFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWN--FLESHVFEGTRIERWALLSFGGSHDQKSAIPKFI 628 (1030)
Q Consensus 551 ~fGi~I~~~~~~V~gRvL~pP~I~yg~~~~~~~~~p~~~~G~Wn--l~~~~f~~~~~l~~W~vl~~~~~~~~~~~~~~f~ 628 (1030)
.|||+++.+.++|+||||++.+|.+++.. . ...++ ..+|. ++...++.+..+++|+|++.++. ...+++|+
T Consensus 419 ~Wgi~ld~~l~~v~gRil~sEkI~~~~~~-~-~~~~~--~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~---~~~a~~fi 491 (845)
T KOG1042|consen 419 DWGISLDSNLAEVQGRILPSEKILFGNQK-V-PYEGK--QADWSREFRTCGILRGSNLDNWAVIYPGRN---NSEAQEFI 491 (845)
T ss_pred hcCcccCcchhhccceecCccceecCCcc-c-CCCcc--hhhhhhhcccccccccCCCcceEEEecCcc---HHHHHHHH
Confidence 99999999999999999999999998752 1 12223 46784 77888999999999999998774 46899999
Q ss_pred HHHHHHHHHcCccccCCcccccccccccccCChhHHHHHHHHHHHHhcCCCcEEEEEEecCCcc-HHHHHHHHhhccCee
Q 001684 629 CQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKG-YADLKRIAETSVGVV 707 (1030)
Q Consensus 629 ~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~GI~ 707 (1030)
+.|.+.+..+||+|..|-.+ ++.+ +..+.+++.|......++++|+||+|+..++ |+.||++++++.+||
T Consensus 492 ~~l~r~a~~mgm~i~~P~~v-~i~d--------dr~~tYvraiqq~v~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvP 562 (845)
T KOG1042|consen 492 NMLRRVASSMGMQIREPICV-EIKD--------DRPGTYVRAIQQVVGADIQMVVCILPSDNKTRYDSIKKYLCVDCPVP 562 (845)
T ss_pred HHHHHhccccceecCCceEE-EeCC--------CChHHHHHHHHHhccCCceEEEEEecCCchhhHHHHHhheeccCCCc
Confidence 99999999999999976555 4432 2345556666666667899999999999988 999999999999999
Q ss_pred eEeEeeccccCcc--hHHHHHHHHHHHhhcCCceeeecCCCCCCCCCccCCCCCeEEEEEEecCCCCCCCCCCeEEEEEE
Q 001684 708 SQCCLYSNLGKLS--SQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVG 785 (1030)
Q Consensus 708 TQci~~~t~~k~~--~q~~~Ni~lKINaKLGG~n~~l~~~~~~~ip~~~~~~~~tMiiG~DVsHp~~~~~~~pSiaavVa 785 (1030)
||||..+|+.+.. .++..+|++||||||||..|.+ +|| + +.+||||+||+|.+. .+..|++|+||
T Consensus 563 sQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V------~IP--L---k~lMiVG~Dv~hd~~--~k~rsvga~VA 629 (845)
T KOG1042|consen 563 SQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKV------EIP--L---KGLMIVGFDVYHDPT--LKGRSVGAFVA 629 (845)
T ss_pred cceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEE------eee--c---ccceEEEEEeecCcc--ccCceEEEEEE
Confidence 9999999998754 4688999999999999999998 477 3 679999999999864 34679999999
Q ss_pred eecCCCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHHcCCCCcEEEEEeCCCChhHHHHHHHHHHH----HHHHHH
Q 001684 786 SMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQ----SIREAC 861 (1030)
Q Consensus 786 S~d~~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~~~~lP~~IIiYRDGVSEgQ~~~Vl~~Ev~----~Ik~a~ 861 (1030)
|+| +..++|+|.+..|...+|+.+.|+-++..+|++|++.|..+|+||||||||||+||++++.++||+ ++.+.+
T Consensus 630 s~n-~~~tr~fS~v~~~~~~qel~d~L~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~ 708 (845)
T KOG1042|consen 630 SMN-NDFTRWFSRVIEQENGQELADNLKVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCY 708 (845)
T ss_pred eec-cchhhhhhheecccCHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHH
Confidence 999 589999999999999999999999999999999999999999999999999999999999999999 666666
Q ss_pred hhC-CCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCCCeeeeccccccCCcceEEEeecCCccccccceeEEE
Q 001684 862 SRF-PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHI 940 (1030)
Q Consensus 862 ~~~-~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~V 940 (1030)
.++ .+++|+++||||+||.++|||..... ..+||+||||||..||.|+++||||+||++.|||+.||||+|
T Consensus 709 a~~~~~~~~rl~~iVV~KrvntR~f~~~~~--------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnv 780 (845)
T KOG1042|consen 709 AELSNKEKPRLAVIVVTKRVNTRFFLQGSS--------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNV 780 (845)
T ss_pred HHhcCCCCCcEEEEEEEeeccHHHHhhCCc--------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEE
Confidence 666 56899999999999999999997754 579999999999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhcccccccCC
Q 001684 941 LWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSE 994 (1030)
Q Consensus 941 l~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~~~ 994 (1030)
|+|+.++++|.+|+|||+|||+|+||.++|++||||+|||++|+....-++..+
T Consensus 781 i~d~~gL~PDkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ep 834 (845)
T KOG1042|consen 781 IYDDMGLSPDKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHREP 834 (845)
T ss_pred EecCCCCCHHHHHHHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhhch
Confidence 999999999999999999999999999999999999999999998887777543
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=3.5e-98 Score=873.08 Aligned_cols=419 Identities=50% Similarity=0.883 Sum_probs=372.0
Q ss_pred CcccccceEEeccceEeeeEEecCCceecCCCCccccccCCcCCccccccccccccccccceeEEEEeCCCcccc---cc
Q 001684 547 NQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQK---SA 623 (1030)
Q Consensus 547 ~~l~~fGi~I~~~~~~V~gRvL~pP~I~yg~~~~~~~~~p~~~~G~Wnl~~~~f~~~~~l~~W~vl~~~~~~~~~---~~ 623 (1030)
++|++|||+|+.+|++|+||+|+||+|.|+++.. ...|. +|+||+++.+|+.++.+++|+||++.+..... ..
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~--~~~~~--~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~ 76 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSK--TVPPR--NGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERAD 76 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCcc--ccCCC--CCceeecCcccCCCcccceEEEEEecCccccchhHHH
Confidence 3678999999999999999999999999996533 23455 89999999999999999999999998642112 37
Q ss_pred HHHHHHHHHHHHHHcCccccCCcccccccccccccCChhHHHHHHHHHHHHhcCCCcEEEEEEecCCcc-HHHHHHHHhh
Q 001684 624 IPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKG-YADLKRIAET 702 (1030)
Q Consensus 624 ~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~ 702 (1030)
+++|++.|.+.|+.+||.+. ... . ...+.++..++.+.+.....++|||||+|+++.+ |+.||++||.
T Consensus 77 ~~~F~~~l~~~~~~~g~~~~--~~~-~--------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~~~~~~Y~~iK~~~~~ 145 (426)
T cd04657 77 LRNFVDQLVKTVIGAGINIT--TAI-A--------SVEGRVEELFAKLKQAKGEGPQLVLVILPKKDSDIYGRIKRLADT 145 (426)
T ss_pred HHHHHHHHHHHHHhcCCccc--ccc-c--------ccchhHHHHHHHHHhhccCCCCEEEEEEcCCCcchHHHHHHHHhh
Confidence 89999999999999999986 111 1 1234566666666554434689999999998766 9999999999
Q ss_pred ccCeeeEeEeeccccC-cchHHHHHHHHHHHhhcCCceeeecCCCCCCCCCccCCCCCeEEEEEEecCCCCCC-CCCCeE
Q 001684 703 SVGVVSQCCLYSNLGK-LSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLD-DFSPSV 780 (1030)
Q Consensus 703 ~~GI~TQci~~~t~~k-~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~ip~~~~~~~~tMiiG~DVsHp~~~~-~~~pSi 780 (1030)
+.||+||||..+++.+ .+.+++.||+||||+||||+||.|+... .+ +....+|||||+||+||++++ ...|||
T Consensus 146 ~~gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~--~~~~~~tmiiG~Dv~H~~~~~~~~~pSi 220 (426)
T cd04657 146 ELGIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RP--LLTKEPTMVLGADVTHPSPGDPAGAPSI 220 (426)
T ss_pred cCCcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---cc--ccCCCCEEEEEEeeecCCCCCCCCCCcE
Confidence 9999999999999976 6789999999999999999999997532 11 234588999999999999875 467999
Q ss_pred EEEEEeecCCCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHHcCCCCcEEEEEeCCCChhHHHHHHHHHHHHHHHH
Q 001684 781 AAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREA 860 (1030)
Q Consensus 781 aavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~~~~lP~~IIiYRDGVSEgQ~~~Vl~~Ev~~Ik~a 860 (1030)
||+|||+|. .+++|.+.+++|.+++|++++|++|+.++|+.|++.+|.+|++|||||||||||||.+|+++|+++|++|
T Consensus 221 aa~Vas~d~-~~~~y~~~~~~q~~~~e~i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a 299 (426)
T cd04657 221 AAVVASVDW-HLAQYPASVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKA 299 (426)
T ss_pred EEEEEecCC-cccccceEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHH
Confidence 999999996 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhC-CCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCCCeeeeccccccCCcceEEEeecCCccccccceeEE
Q 001684 861 CSRF-PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYH 939 (1030)
Q Consensus 861 ~~~~-~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~ 939 (1030)
|.++ ++|+|+||||||+||||+|||+.+..+.+ . ..+||+||||||++||+|..+||||+||.++|||||||||+
T Consensus 300 ~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~--~--~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~ 375 (426)
T cd04657 300 CAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDAD--G--KNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYH 375 (426)
T ss_pred HHHhccCCCCcEEEEEeccceeeeEeccCccccc--c--cCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEE
Confidence 9999 67999999999999999999997764321 1 37999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhccccc
Q 001684 940 ILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYL 990 (1030)
Q Consensus 940 Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl 990 (1030)
||+||+++++|+||+|||+|||+|+||+++||+|+|+||||++|+|||+|+
T Consensus 376 vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 376 VLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999996
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.6e-91 Score=824.66 Aligned_cols=436 Identities=28% Similarity=0.460 Sum_probs=383.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhcCCCCCCCC--CcccccceEEeccceEeeeEEecCCceecCCCCccccccCCcCCcc
Q 001684 515 TARILKMGCQRPKERKAMIDGVMRGPVGPTSG--NQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQ 592 (1030)
Q Consensus 515 ~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~--~~l~~fGi~I~~~~~~V~gRvL~pP~I~yg~~~~~~~~~p~~~~G~ 592 (1030)
..+|++.++.+|.+|++.|.++++.+... .+ ++|++|||+|++++++|+||+|+||.|.|+++.. ..+. .|+
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~-~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~---~~~~--~~~ 76 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKN-PSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFV---YANS--NAD 76 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCcc---CCCC--CCC
Confidence 46799999999999999999998876554 32 5799999999999999999999999999987632 2233 566
Q ss_pred cc--ccccccccccccceeEEEEeCCCccccccHHHHHHHHHHHHHHcCccccCCcccccccccccccCChhHHHHHHHH
Q 001684 593 WN--FLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKK 670 (1030)
Q Consensus 593 Wn--l~~~~f~~~~~l~~W~vl~~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~ 670 (1030)
|+ +.+..|+.+..+++|+|+++.. +...++.|++.|.+.++++||.+..|.++ ... .++.+++++.
T Consensus 77 w~~~~~~~~~~~~~~~~~W~vi~~~~---~~~~~~~f~~~l~~~~~~~G~~~~~P~~~-~~~--------~~~~~~~~~~ 144 (448)
T cd04658 77 WKREIRNQPLYDAVNLNNWVLIYPSR---DQREAESFLQTLKQVAGPMGIQISPPKII-KVK--------DDRIETYIRA 144 (448)
T ss_pred cchhhcCCcccCCcccCeEEEEEecC---CHHHHHHHHHHHHHHHHHcCCccCCCeEE-EeC--------CCCHHHHHHH
Confidence 65 4566789999999999999874 45789999999999999999999875544 221 1123444444
Q ss_pred HHHHhcCCCcEEEEEEecCCcc-HHHHHHHHhhccCeeeEeEeeccccCc--chHHHHHHHHHHHhhcCCceeeecCCCC
Q 001684 671 IHEAASNNLQLLICVMERKHKG-YADLKRIAETSVGVVSQCCLYSNLGKL--SSQFLANLALKINAKVGGCTVALYNSLP 747 (1030)
Q Consensus 671 i~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~GI~TQci~~~t~~k~--~~q~~~Ni~lKINaKLGG~n~~l~~~~~ 747 (1030)
+.+....+++|+|||+|++... |+.||++|+.+.||+||||..+++.+. ..+++.||++|||+||||+||.+...
T Consensus 145 l~~~~~~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~-- 222 (448)
T cd04658 145 LKDAFRSDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP-- 222 (448)
T ss_pred HHHhhcCCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC--
Confidence 4444446799999999998766 999999999999999999999998764 46789999999999999999999642
Q ss_pred CCCCCccCCCCCeEEEEEEecCCCCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceee-eecHhhHHHHHHHHHHHH
Q 001684 748 SQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEI-IQDLGVMVGELLDDFYHE 826 (1030)
Q Consensus 748 ~~ip~~~~~~~~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Ei-i~~l~~~~~~~L~~f~~~ 826 (1030)
.....+|||||+||+||+++ ..||+||+|||+|. ..++|++.++.|..++|+ +++|++|+.++|+.|++.
T Consensus 223 ------~~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l~~~~~~~l~~y~~~ 293 (448)
T cd04658 223 ------PFILKNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSLGKSMKKALKAYKKE 293 (448)
T ss_pred ------CCCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHHHHHHHHHHHHHHHH
Confidence 12247899999999999863 46999999999995 889999999999999998 889999999999999999
Q ss_pred cCCCCcEEEEEeCCCChhHHHHHHHHHHHHHHHHHhhC-CCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCCC
Q 001684 827 LNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRF-PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPP 905 (1030)
Q Consensus 827 ~~~lP~~IIiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~-~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~p 905 (1030)
+|.+|++|||||||||||||..|+++|+++|++||..+ .+|+|+||||+|+||||+|||+.+.+ ..+||+|
T Consensus 294 ~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~--------~~~N~~~ 365 (448)
T cd04658 294 NKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN--------NFSNPPP 365 (448)
T ss_pred hCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC--------CCCCCCC
Confidence 99999999999999999999999999999999999987 67899999999999999999997643 4689999
Q ss_pred eeeeccccccCCcceEEEeecCCccccccceeEEEEeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHh
Q 001684 906 GTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYR 985 (1030)
Q Consensus 906 GTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R 985 (1030)
|||||++||+|..+||||+||.++||||||+||+||+||+++++|+||+|||+|||+|+||+++||+|+|+||||++|+|
T Consensus 366 GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~ 445 (448)
T cd04658 366 GTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFL 445 (448)
T ss_pred CcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 001684 986 GR 987 (1030)
Q Consensus 986 ~r 987 (1030)
..
T Consensus 446 ~g 447 (448)
T cd04658 446 VG 447 (448)
T ss_pred hc
Confidence 64
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.5e-84 Score=752.22 Aligned_cols=384 Identities=32% Similarity=0.508 Sum_probs=335.3
Q ss_pred ceEeeeEEecCCceecCCCCccccccCCcCCcccccccccccccccc-ceeEEEEeCCCccccccHHHHHHHHHHHHHHc
Q 001684 560 MTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRI-ERWALLSFGGSHDQKSAIPKFICQLSQRCEQL 638 (1030)
Q Consensus 560 ~~~V~gRvL~pP~I~yg~~~~~~~~~p~~~~G~Wnl~~~~f~~~~~l-~~W~vl~~~~~~~~~~~~~~f~~~L~~~~~~~ 638 (1030)
+++|+||+||||.|.|+++ |++++++|..++.+ ++|+|+++.+. ..++|++.|.+.++++
T Consensus 2 ~~~v~grvL~~p~i~~~~~--------------w~~~~~~f~~~~~~~~~W~vi~~~~~-----~~~~f~~~l~~~~~~~ 62 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK--------------FLRNIGPFEKPAKITNPVAVIAFRNE-----EVDDLVKRLADACRQL 62 (393)
T ss_pred ceEEeeEecCCCceEecCC--------------ccccCCeeCCCCEeCCeEEEEEcccH-----HHHHHHHHHHHHHHhC
Confidence 6789999999999999631 99999999999988 99999998753 3568999999999999
Q ss_pred CccccC-CcccccccccccccCChhHHHHHHHHHHHHhcCCCcEEEEEEecCCcc-HHHHHHHHhhccCeeeEeEeeccc
Q 001684 639 GIFLNK-STIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKG-YADLKRIAETSVGVVSQCCLYSNL 716 (1030)
Q Consensus 639 Gi~i~~-~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~GI~TQci~~~t~ 716 (1030)
||.+.. ++.. .+... .+..+++++.+++.. ..+++|||||+|+++.+ |+.||++++.. ||+||||..+++
T Consensus 63 G~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~---~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~ 134 (393)
T cd02826 63 GMKIKEIPIVS-WIEDL---NNSFKDLKSVFKNAI---KAGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTA 134 (393)
T ss_pred CCccCCCCCcc-eeecc---cccHHHHHHHHHHHh---hcCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhh
Confidence 999987 3322 11110 001334555555443 34799999999998877 99999999888 999999999999
Q ss_pred cC--cchHHHHHHHHHHHhhcCCceeeecCCCCCCCCCccCCCCCeEEEEEEecCCCCC-CCCCCeEEEEEEeecCCCcc
Q 001684 717 GK--LSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPL-DDFSPSVAAVVGSMNWPAAN 793 (1030)
Q Consensus 717 ~k--~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~ip~~~~~~~~tMiiG~DVsHp~~~-~~~~pSiaavVaS~d~~~~~ 793 (1030)
.+ ...++++||++|||+||||+||.|+... +...+|||||+||+|++++ ....||++|+|||+|. . +
T Consensus 135 ~~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~~--------~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~ 204 (393)
T cd02826 135 KKMRRLKQTLDNLLRKVNSKLGGINYILDSPV--------KLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-T 204 (393)
T ss_pred ccccccHHHHHHHHHHHhhhhCCeeeEeccCC--------CCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-c
Confidence 76 6689999999999999999999996421 1247899999999999876 3357999999999995 3 4
Q ss_pred eeeEEEEEecCceeeeecHhhHHHHHHHHHHHHcCC-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHHHhhC-CCCCCCE
Q 001684 794 KYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNK-LPRRIIFFRDGVSETQFYKVLQEELQSIREACSRF-PGYSPPI 871 (1030)
Q Consensus 794 ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~~~~-lP~~IIiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~-~~~~Pki 871 (1030)
.+.+.++.|..++|++++|++|++++|+.|+++++. +|++|||||||||||||+.|+++|+++|++||. + .+|+|+|
T Consensus 205 ~~g~~~~~~~~~~~~~~~l~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~i 283 (393)
T cd02826 205 FLGGFLYVQPSREVKLQDLGEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKL 283 (393)
T ss_pred ccceEEEEecCccchHHHHHHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCE
Confidence 445667888888999999999999999999999999 999999999999999999999999999999998 5 7899999
Q ss_pred EEEEEeeccccccccCCCCCCCCCCCCCCCCCCCeeeeccccccCCcceEEEeecCCccccccceeEEEEeCCCCCCHHH
Q 001684 872 TFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDE 951 (1030)
Q Consensus 872 t~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~ 951 (1030)
|||+|+||||+|||+.+.++ ..+||+||||||++||+|..+||||+||.++|||+||+||+||+||+++++|+
T Consensus 284 t~Ivv~Krh~~Rff~~~~~~-------~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~ 356 (393)
T cd02826 284 VIIVVQKRHNTRFFPNEKNG-------GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNE 356 (393)
T ss_pred EEEEEeccccceeccCCCCC-------CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHH
Confidence 99999999999999976542 35899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCccccccchhHHHHHHhccc
Q 001684 952 LQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRL 988 (1030)
Q Consensus 952 Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~ 988 (1030)
||+|||+|||+|+||+++||+|+|+||||++|+|||.
T Consensus 357 lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 357 LEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred HHHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999984
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=1.8e-70 Score=615.77 Aligned_cols=296 Identities=46% Similarity=0.761 Sum_probs=265.3
Q ss_pred EEEEEEecCCcc-HHHHHHHHhhccCeeeEeEeeccccCc--chHHHHHHHHHHHhhcCCce-eeecCCCCCCCCCccCC
Q 001684 681 LLICVMERKHKG-YADLKRIAETSVGVVSQCCLYSNLGKL--SSQFLANLALKINAKVGGCT-VALYNSLPSQIPRLFFP 756 (1030)
Q Consensus 681 lvlvIlp~~~~~-Y~~IK~~~~~~~GI~TQci~~~t~~k~--~~q~~~Ni~lKINaKLGG~n-~~l~~~~~~~ip~~~~~ 756 (1030)
+||||+|+++.+ |..||++++.+.||+||||..+++.+. ..+++.||++|||+||||.| |.++.. ...+ +
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~--~-- 74 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSID--L-- 74 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSS--E--
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--cccc--c--
Confidence 589999998777 999999999999999999999999887 46899999999999999995 554321 1111 1
Q ss_pred CCCeEEEEEEecCCCCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHHcCC-CCcEEE
Q 001684 757 DEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNK-LPRRII 835 (1030)
Q Consensus 757 ~~~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~~~~-lP~~II 835 (1030)
.++||||+||+|++++....||++|+|+|+| ...++|.+.++.|..++|++++|++++.++|+.|++.++. +|++||
T Consensus 75 -~~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~Ii 152 (302)
T PF02171_consen 75 -KNTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNLEEIIKEALKEFKKNNGKWLPERII 152 (302)
T ss_dssp -SEEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEE
T ss_pred -CceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcchhhHHHHHHHHHHHHcCCCCCceEE
Confidence 6899999999999886656799999999999 4889999999999999999999999999999999999998 999999
Q ss_pred EEeCCCChhHHHHHHHHHHHHHHHHHhhC-CCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCCCeeeeccccc
Q 001684 836 FFRDGVSETQFYKVLQEELQSIREACSRF-PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVIT 914 (1030)
Q Consensus 836 iYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~-~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It 914 (1030)
|||||||||||.+|+++|+++|++||+++ .+|+|+|++|+|+||||+|||+.+..+ ...||+||||||+.||
T Consensus 153 iyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~-------~~~N~~~Gtvvd~~i~ 225 (302)
T PF02171_consen 153 IYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRD-------GLQNPPPGTVVDTGIT 225 (302)
T ss_dssp EEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEE-------TTTEECTTEEESSEEE
T ss_pred EEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccccc-------ccCCCCCCeeecccee
Confidence 99999999999999999999999999999 689999999999999999999987642 4789999999999999
Q ss_pred cCCcceEEEeecCCccccccceeEEEEeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhcccccc
Q 001684 915 HPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLE 991 (1030)
Q Consensus 915 ~p~~~dFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~ 991 (1030)
+|..+||||+||.++|||+||+||+||+||..++.|+||+|||+|||+|++|++++|+|+|+||||++|+|++.++.
T Consensus 226 ~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~ 302 (302)
T PF02171_consen 226 SPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK 302 (302)
T ss_dssp ECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred eecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998763
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=4.9e-46 Score=433.25 Aligned_cols=284 Identities=20% Similarity=0.230 Sum_probs=230.1
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEEEecCC------cc-HHHHHHHHhhccCeeeEeEeeccccCc--chHHHHHHHHHHH
Q 001684 662 SLLESKLKKIHEAASNNLQLLICVMERKH------KG-YADLKRIAETSVGVVSQCCLYSNLGKL--SSQFLANLALKIN 732 (1030)
Q Consensus 662 ~~le~~l~~i~~~~~~~~~lvlvIlp~~~------~~-Y~~IK~~~~~~~GI~TQci~~~t~~k~--~~q~~~Ni~lKIN 732 (1030)
+.+.++++...+....+++++||++|++. .+ |..||+++ ++.|||||||..+|+.+. ..+++.||++|||
T Consensus 94 ~~~~~a~~~~~~~~~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~ 172 (404)
T cd04659 94 EAIIEAVDLALSESSQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALY 172 (404)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHH
Confidence 44555555555443357899999999875 45 99999986 689999999999999764 5679999999999
Q ss_pred hhcCCceeeecCCCCCCCCCccCCCCCeEEEEEEecCCCCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeee---
Q 001684 733 AKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEII--- 809 (1030)
Q Consensus 733 aKLGG~n~~l~~~~~~~ip~~~~~~~~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii--- 809 (1030)
+|+||+||.|... ...+|||||+||+|+..+. .++++++..+|. ... +.+..+...++.+
T Consensus 173 aKlGG~pW~l~~~----------~~~~~~iIGidv~~~~~~~---~~~~~~a~vf~~-~g~---g~~~~~~~~~~~~~~~ 235 (404)
T cd04659 173 AKLGGIPWKLDAD----------SDPADLYIGIGFARSRDGE---VRVTGCAQVFDS-DGL---GLILRGAPIEEPTEDR 235 (404)
T ss_pred HhcCCCceEcccC----------CCCCeEEEEEEEEEcCCCC---EEEEEEEEEEcC-CCC---EEEEecCccCCccccc
Confidence 9999999999642 1367999999999997642 223333333342 211 1222333334433
Q ss_pred --ecHhhHHHHHHHHHHHHcCC-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001684 810 --QDLGVMVGELLDDFYHELNK-LPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFP 886 (1030)
Q Consensus 810 --~~l~~~~~~~L~~f~~~~~~-lP~~IIiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~ 886 (1030)
++|.+++.++|+.|++.++. +|+||||||||+. .++|+++|++||.++. ++++||+|+||||+|||+
T Consensus 236 ~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~---~~i~~I~V~k~~~~R~f~ 305 (404)
T cd04659 236 SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG---IKVDLVEVIKSGPHRLFR 305 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC---ceEEEEEEEecCCcceEE
Confidence 46999999999999999888 9999999999994 6899999999999762 899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeeeccccccCCcceEEEeecCCc--------cccccceeEEEEeCCCCCCHHHHHHHHHH
Q 001684 887 YDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGV--------KGTSRPTHYHILWDDNKFTSDELQKLVYN 958 (1030)
Q Consensus 887 ~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~--------qGTarPthY~Vl~De~~~~~d~Lq~LTy~ 958 (1030)
.+..+ ...||++|||||.+ .+||||++|.+. +||++|+| |++|+...+.|+|+++||+
T Consensus 306 ~~~~~-------~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~ 371 (404)
T cd04659 306 FGTYP-------NGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILG 371 (404)
T ss_pred ecCCC-------CCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHH
Confidence 76431 23799999999964 599999999885 99999999 7788888999999999999
Q ss_pred HhhcccccCC-CccccccchhHHHHHHhcc
Q 001684 959 LCYTFVRCTK-PVSLVPPAYYAHLAAYRGR 987 (1030)
Q Consensus 959 LC~~y~r~t~-sVslPaP~yYA~~~a~R~r 987 (1030)
||++|+|++. ++++|+|+||||++|+...
T Consensus 372 Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 372 LTKLNWNSFQFYSRLPVTIHYADRVAKLLK 401 (404)
T ss_pred HhhcCcCCCCCCCCcceEEeHHHHHHHHHh
Confidence 9999999998 9999999999999998654
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.87 E-value=2e-22 Score=199.37 Aligned_cols=131 Identities=31% Similarity=0.616 Sum_probs=107.3
Q ss_pred CChHHHHHHHHhhhhhhhhhhcCCCChhhHHHHHHhcceeEEEEeeeccceeEEEeecccCCCccceeecCCCCceeHHH
Q 001684 386 VGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLS 465 (1030)
Q Consensus 386 ~~l~d~l~~~l~~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~h~~~~k~~rI~gi~~~~a~~~~F~~~dG~~iSV~d 465 (1030)
++|+|++.++.+.... ......+++++.|+|++|.++|+++.+.|+|.+|+++.+++.+|++.+|+.+||+|
T Consensus 1 ~~vld~~~~~~~~~~~--------~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~e 72 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR--------NNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAE 72 (135)
T ss_dssp HHHHHHHHHHCTCSSH--------HHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHH
T ss_pred CcHHHHHHHHHhhhcc--------cchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHH
Confidence 3688888887763311 01233455999999999999998766789999999999999999977799999999
Q ss_pred HHHhhcCcccccCCCceEEec-CCC--cccccccceeeccCccccCCCCHHHHHHHHHhccC
Q 001684 466 YFKDHYNYNIQFRNLPCLQIS-RSK--PCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQ 524 (1030)
Q Consensus 466 YFk~~Yni~L~~p~lPlv~vg-~~k--~~ylP~Elc~I~~gQ~~~~kLs~~q~~~mik~a~~ 524 (1030)
||+++||++|+||+||||.++ ..+ ++|||||||.|+|+|++.+++.+.+++.|++.+|.
T Consensus 73 Yf~~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~ 134 (135)
T PF02170_consen 73 YFKEKYNIRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACS 134 (135)
T ss_dssp HHHHTCT---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS
T ss_pred HHHhhhhcccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhc
Confidence 999999999999999999998 444 89999999999999999999999999999999885
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.78 E-value=4.5e-19 Score=170.20 Aligned_cols=111 Identities=29% Similarity=0.374 Sum_probs=95.3
Q ss_pred cCChHHHHHHHHhhhhhhhhhhcCCCChhhHHHHHHhcceeEEEEeeeccceeEEEeecccCCCccceeecCCCCceeHH
Q 001684 385 SVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLL 464 (1030)
Q Consensus 385 ~~~l~d~l~~~l~~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~h~~~~k~~rI~gi~~~~a~~~~F~~~dG~~iSV~ 464 (1030)
+++|+|+++++++.. + ..+.+.+.++.++.++|+|++|.++|++.++.|+|.+|++.++++. |++.+|+++||+
T Consensus 1 ~~~v~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~ 74 (115)
T cd02825 1 ADPVIETMCKFPKDR-E----IDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFA 74 (115)
T ss_pred CccHHHHHHHHhccc-c----cccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHH
Confidence 368999999998742 1 1245556788899999999999999976667899999999999887 877788899999
Q ss_pred HHHHhhcCcccccCCCceEEec-C---CCcccccccceeec
Q 001684 465 SYFKDHYNYNIQFRNLPCLQIS-R---SKPCYLPMELCMIC 501 (1030)
Q Consensus 465 dYFk~~Yni~L~~p~lPlv~vg-~---~k~~ylP~Elc~I~ 501 (1030)
|||+++||++|+||+||||++| . .+.+|||||||.|.
T Consensus 75 dYf~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 75 DYFKERYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HHHHHHcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 9999999999999999999999 4 56899999999873
No 11
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.76 E-value=2.8e-18 Score=164.80 Aligned_cols=110 Identities=42% Similarity=0.787 Sum_probs=93.5
Q ss_pred CChHHHHHHHHhhhhhhhhhhcCCCChhhHHHHHHhcceeEEEEeeec-cceeEEEeecccCCCccceeecCCC-CceeH
Q 001684 386 VGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRE-TVQRYRVYGLTEEVTENLWFADRDG-KNIRL 463 (1030)
Q Consensus 386 ~~l~d~l~~~l~~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~h~~-~~k~~rI~gi~~~~a~~~~F~~~dG-~~iSV 463 (1030)
++|+|++.++++... ...+.+.++.+++++|+|++|.++|.+ ..+.|+|.||+..++.+.+|.+++| ++|||
T Consensus 2 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV 75 (114)
T cd02846 2 QPVIEFLKEFLGFDT------PLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISV 75 (114)
T ss_pred ccHHHHHHHHhCccc------ccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEH
Confidence 689999999987431 113445678899999999999999975 3467999999999998999986665 58999
Q ss_pred HHHHHhhcCcccccCCCceEEec-CCCcccccccceeec
Q 001684 464 LSYFKDHYNYNIQFRNLPCLQIS-RSKPCYLPMELCMIC 501 (1030)
Q Consensus 464 ~dYFk~~Yni~L~~p~lPlv~vg-~~k~~ylP~Elc~I~ 501 (1030)
+|||+++||++|+||+||||++| +.+++|+|||||.|+
T Consensus 76 ~dYf~~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 76 ADYFKEKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHHHHHHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 99999999999999999999999 567899999999974
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.72 E-value=1.3e-17 Score=159.83 Aligned_cols=104 Identities=26% Similarity=0.390 Sum_probs=88.4
Q ss_pred CChHHHHHHHHhhhhhhhhhhcCCCChhhHHHHHHhcceeEEEEeeeccceeEEEeecccCCCccceeecCCCCceeHHH
Q 001684 386 VGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLS 465 (1030)
Q Consensus 386 ~~l~d~l~~~l~~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~h~~~~k~~rI~gi~~~~a~~~~F~~~dG~~iSV~d 465 (1030)
.+|+|++.++++..+ ...+++++++.|+|+.|.+.| ++++|+|.+|+++.++..+|+..+|..+||+|
T Consensus 2 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~V~t~y--n~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~ 69 (117)
T cd02845 2 TTVLDRMHKLYRQET----------DERFREECEKELIGSIVLTRY--NNKTYRIDDIDFDKTPLSTFKKSDGTEITFVE 69 (117)
T ss_pred eeHHHHHHHHHHhcc----------cHHHHHHHHHHcCCCEEEEee--CCeEEEEeEecCCCCccccCcCCCCCeeeHHH
Confidence 367888887765321 125778999999999999999 46889999999999999999866767899999
Q ss_pred HHHhhcCcccccCCCceEEec-C--------CCcccccccceeec
Q 001684 466 YFKDHYNYNIQFRNLPCLQIS-R--------SKPCYLPMELCMIC 501 (1030)
Q Consensus 466 YFk~~Yni~L~~p~lPlv~vg-~--------~k~~ylP~Elc~I~ 501 (1030)
||+++||++|++++||||.++ + .+++|||||||.++
T Consensus 70 Yy~~kY~i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~lt 114 (117)
T cd02845 70 YYKKQYNIEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLT 114 (117)
T ss_pred HHHHHcCCccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhc
Confidence 999999999999999999997 2 24799999999986
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.47 E-value=1.8e-14 Score=117.01 Aligned_cols=52 Identities=54% Similarity=0.839 Sum_probs=42.2
Q ss_pred ccccccccCCCCCCccccCCcEEEEeceeEeEeeeccceeeeeccccceeecc
Q 001684 333 IPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHES 385 (1030)
Q Consensus 333 ~~vGrsfF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~~l~LniDvs~~aF~~~ 385 (1030)
+.+||+||+++... .+|++|+|+|+|||+||||+.++|.||||+++++|+++
T Consensus 1 ~~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 36899999877543 78999999999999999999999999999999999974
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.32 E-value=1.5e-12 Score=127.61 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=68.6
Q ss_pred HHHhcceeEEEEeeeccceeEEEeecccCCCccceeecCCC-CceeHHHHHHhhcCcccccCCCceEEec----------
Q 001684 418 VERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDG-KNIRLLSYFKDHYNYNIQFRNLPCLQIS---------- 486 (1030)
Q Consensus 418 l~~~LkGl~V~~~h~~~~k~~rI~gi~~~~a~~~~F~~~dG-~~iSV~dYFk~~Yni~L~~p~lPlv~vg---------- 486 (1030)
..+.|+|+.|.++|. ++.|+|.+|+ +.+++++|..++| +.+||+|||+++||++|++++||||.+.
T Consensus 27 ~~~~l~g~~V~t~hn--~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL~ 103 (135)
T cd02844 27 CACDLKGSVVTAPHN--GRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLLH 103 (135)
T ss_pred cHHHhcCCEEEEcCC--CcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceecc
Confidence 457799999999983 6789999999 9999999985555 5699999999999999999999999763
Q ss_pred -----C------C---Ccccccccceeec
Q 001684 487 -----R------S---KPCYLPMELCMIC 501 (1030)
Q Consensus 487 -----~------~---k~~ylP~Elc~I~ 501 (1030)
+ . ..++||||||.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~v~L~PELC~~~ 132 (135)
T cd02844 104 NRFEEKGESEEKEKDRYFVELPPELCSVI 132 (135)
T ss_pred cccccccccccccccceEEEeChHHhccc
Confidence 0 0 1369999999875
No 15
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=8.2e-11 Score=134.25 Aligned_cols=297 Identities=20% Similarity=0.146 Sum_probs=178.7
Q ss_pred cccHHHHHHHHHHHHHHcC-cccc--CCcccccccccccccCChhHHHHHHHHHHHHhcCCCcEEEEEEecCCcc-HHHH
Q 001684 621 KSAIPKFICQLSQRCEQLG-IFLN--KSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKG-YADL 696 (1030)
Q Consensus 621 ~~~~~~f~~~L~~~~~~~G-i~i~--~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~~~~-Y~~I 696 (1030)
...+..+.+.+...++..| +... -+... ..+... ...+++...++++. ...++..-+-++.. |+.+
T Consensus 355 ~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~---~a~~r~-~~kddl~~iIkeid------~ee~~k~e~ykdd~~Yail 424 (685)
T COG1431 355 LTRLKSTIKKVVYGFKNSNGIDWKVEGLTLH---VAGKRP-KMKDDLTKIIKEID------VEELKKQEMYKDDVKYAIL 424 (685)
T ss_pred hhHHHHHHHHHHHHHHhccchhhhcccceee---ecccch-hhhccchhhhhhhh------hhhhccccccccchHHHHH
Confidence 3456778888888887776 4322 11111 000000 01133444444431 12233333444555 9999
Q ss_pred HHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhhcCCceeeecCCCCCCCCCccCCCCCeEEEEEEecCCCCCCCC
Q 001684 697 KRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDF 776 (1030)
Q Consensus 697 K~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~ip~~~~~~~~tMiiG~DVsHp~~~~~~ 776 (1030)
|+ .+.-|++|.|.-.+.+|.-.-++.|+|.|+-||-+|+++.+-+.. ...+.|+|+||+.-.-+
T Consensus 425 Kr---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~~----------gpvDaivGlDvsr~~~g--- 488 (685)
T COG1431 425 KR---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNGL----------GPVDAIVGLDVSRVSEG--- 488 (685)
T ss_pred Hh---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeeccC----------CCccceeeeeeeEEeeC---
Confidence 99 445699999999988876677899999999999999999985421 22368999999986532
Q ss_pred CCeEEEEEEeecCC-CcceeeEEEEEecCceeeeecHhhHHHHHHHHHHH---HcC-CCCcEEEEEeCCCChhHHHHHHH
Q 001684 777 SPSVAAVVGSMNWP-AANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYH---ELN-KLPRRIIFFRDGVSETQFYKVLQ 851 (1030)
Q Consensus 777 ~pSiaavVaS~d~~-~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~---~~~-~lP~~IIiYRDGVSEgQ~~~Vl~ 851 (1030)
...+-|++.-.|.. ... +.|..-.+ .+++.+ +..-.|.. ..+ ..-++|++.|||- +..
T Consensus 489 n~tV~gct~~f~seg~l~------eyy~t~tp---a~GErl-~~~g~yle~~~~~gfe~~n~iV~lRDG~-------l~~ 551 (685)
T COG1431 489 NWTVEGCTSCFVSEGGLE------EYYHTVTP---ALGERL-ETSGRYLEKMNWRGFESRNLIVTLRDGK-------LVA 551 (685)
T ss_pred CeEEeeeeEEEeccCceE------EeeecccC---Cccchh-hhHHHHHHHHHhhhhhccCeeEEEecCc-------cch
Confidence 34455544333421 122 22221111 122222 11111211 112 3457899999994 667
Q ss_pred HHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCCCeeeecc------ccccCCcceEEEee
Q 001684 852 EELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDT------VITHPREFDFYLCS 925 (1030)
Q Consensus 852 ~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~------~It~p~~~dFyL~S 925 (1030)
.|++++++.-..+ ...++++.+.| .+.+||..+.. .+ |-.+-- .++.| +
T Consensus 552 ~E~aavkeyg~el---gsn~ev~~i~k-nNp~vf~~e~~---------i~----g~f~~~~~s~~h~~~~~--------y 606 (685)
T COG1431 552 GEIAAVKEYGGEL---GSNPEVNRILK-NNPWVFAIEGE---------IW----GAFVRLDGSTVHLCCSP--------Y 606 (685)
T ss_pred HHHHHHHHHhhhc---CCChhhheecc-cCCeEEEecce---------ee----eEEEecCCcccccccCC--------C
Confidence 8888888776654 24455565554 56669987643 11 333322 22222 1
Q ss_pred cCCccccccceeEEEEeCCCCCCHHHHHHHHHHHhhcccccCCC--ccccccchhHHHHHHhccc
Q 001684 926 HWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKP--VSLVPPAYYAHLAAYRGRL 988 (1030)
Q Consensus 926 h~~~qGTarPthY~Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~s--VslPaP~yYA~~~a~R~r~ 988 (1030)
.....||.+|...- .-+..+.-|-|- |.|.|+-|.+.+... .+||||++|||++.+.++.
T Consensus 607 npv~~gT~~pi~~r--~~~g~l~~e~i~-lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~ 668 (685)
T COG1431 607 NPVRRGTPRPIALR--RRDGKLDGELIG-LVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARY 668 (685)
T ss_pred CceecCCCcccccc--cccCccchhhHH-HHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhc
Confidence 23557899998633 334445555555 999999999988888 9999999999999988775
No 16
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.48 E-value=2.1e-07 Score=88.29 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=55.4
Q ss_pred HhcceeEEEEeeeccc--eeEEEeecccCCCccceeecCCCCceeHHHHHHhhcCcccccCCCceEEec
Q 001684 420 RALKNIRVFVCHRETV--QRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQIS 486 (1030)
Q Consensus 420 ~~LkGl~V~~~h~~~~--k~~rI~gi~~~~a~~~~F~~~dG~~iSV~dYFk~~Yni~L~~p~lPlv~vg 486 (1030)
+.+.|..|.+.|++.+ ++|+|.+|.++.++.++|+. ++ .+|++|||+++|||.|++++||||.+.
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~-~~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~ 105 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPG-PE-YETFEEYYKKKYKLDIQNLNQPLLDVD 105 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCC-CC-CccHHHHHHHhcCeEeccCCCCcEeec
Confidence 5688988877664322 68999999999999999963 34 699999999999999999999999996
No 17
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=90.33 E-value=1.2 Score=45.13 Aligned_cols=106 Identities=22% Similarity=0.248 Sum_probs=50.8
Q ss_pred CCeEEEEEEecCCCCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeeeecH---hhHHHHHHHHHHHHcCCCCcEE
Q 001684 758 EPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDL---GVMVGELLDDFYHELNKLPRRI 834 (1030)
Q Consensus 758 ~~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~l---~~~~~~~L~~f~~~~~~lP~~I 834 (1030)
.|.-|-++|+||-.. .-.|+++|.-.|.....+.+-.+.+... +-.+|. .+++..+++...+....+|+=|
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR~f~i~~~--~~~dDy~~M~Evl~RR~~~~~~~~~~lPDLi 83 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYRRFNIKTV--DGGDDYAAMREVLTRRFKRLKEEKEPLPDLI 83 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-EEEEEE----STT-HHHHHHHHHHHHHCCCHHHT----SEE
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEECCccChhhCceEecCCC--CCCcHHHHHHHHHHHHHhcccccCCCCCCEE
Confidence 457899999999743 3468888877764111222334455422 122553 3333333333333344799988
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec--cccc
Q 001684 835 IFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKR--HHTR 883 (1030)
Q Consensus 835 IiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Kr--h~tR 883 (1030)
|| || +.||+.. .++++.++ +.. +-+|-..|+ |.|+
T Consensus 84 lI--DG-G~gQl~a--------a~~~l~~l-gl~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 84 LI--DG-GKGQLNA--------AKEVLKEL-GLN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp EE--SS-SHHHHHH--------HHHHHHCT-T------EEEEESSSSE---
T ss_pred EE--cC-CHHHHHH--------HHHHHHHc-CCC--eEEEEEEeccccccc
Confidence 76 88 6777654 45666665 222 555655554 5455
No 18
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=89.91 E-value=0.65 Score=46.22 Aligned_cols=57 Identities=19% Similarity=0.116 Sum_probs=46.8
Q ss_pred cccceeEEEEeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhccccccc
Q 001684 932 TSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLER 992 (1030)
Q Consensus 932 TarPthY~Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~ 992 (1030)
....+=.+|+.-...-++++|..|||.||+.+.-+...+.+|.|+|+|.++ +.|+-.
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~----~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQA----KEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHH----HHHccc
Confidence 455556777776556789999999999999999999999999999999986 456654
No 19
>PRK11617 endonuclease V; Provisional
Probab=88.60 E-value=8.9 Score=41.30 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=35.9
Q ss_pred ccceeEEEEeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhccccc
Q 001684 933 SRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYL 990 (1030)
Q Consensus 933 arPthY~Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl 990 (1030)
.+|.-..+ ...++.|+--+++-.+|--| ++|.|+..||.+|.+.+...
T Consensus 170 ~kPiyVS~---Gh~i~l~~A~~~v~~~~~~y-------RlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 170 CNPLFIST---GHRVSLDSALAWVQRCMKGY-------RLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHccCC-------CCCHHHHHHHHHHhhhhhhh
Confidence 46653332 34688999999999887433 89999999999998877543
No 20
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=83.20 E-value=38 Score=36.19 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=31.4
Q ss_pred ccceeEEEEeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHH
Q 001684 933 SRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAY 984 (1030)
Q Consensus 933 arPthY~Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~ 984 (1030)
.+|.-..+ ...++.|+--+++-.+|-- -++|.|+..||+++.
T Consensus 166 ~~PiyVS~---Gh~i~l~~A~~~v~~~~~~-------~r~Pep~R~Ad~~sr 207 (208)
T cd06559 166 VKPVYVSP---GHRIDLETAVELVLKCCKG-------YRLPEPTRLADLLSR 207 (208)
T ss_pred CCCEEEcC---CCCcCHHHHHHHHHHHccC-------CCCCcHHHHHHHHhc
Confidence 56653332 3467888888888887643 489999999999875
No 21
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=77.85 E-value=16 Score=45.12 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=62.0
Q ss_pred eEEEEEEecCCCCCCCCCCeEEEEEEeecC-CCcceeeEEEEEecCceeeeecH---hhHHHHHHHHHHHHcC-CCCcEE
Q 001684 760 VIFMGADVTHPHPLDDFSPSVAAVVGSMNW-PAANKYASRMRSQTHRQEIIQDL---GVMVGELLDDFYHELN-KLPRRI 834 (1030)
Q Consensus 760 tMiiG~DVsHp~~~~~~~pSiaavVaS~d~-~~~~ky~s~~~~Q~~~~Eii~~l---~~~~~~~L~~f~~~~~-~lP~~I 834 (1030)
.-|-++|+||-+. .-.|+++|.-.|. |.-..|. .+.+... +-.+|. .+++..++..+.+... .+|+=|
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dDya~m~Evl~RR~~r~~~~~~~~~PDLi 454 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFEDGKPLKASYR-RYNINSI--TGGDDYAAMREVLRRRYSSIQKKNNLPLPDLI 454 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeCCccChhhCC-eeecCCC--CCCCHHHHHHHHHHHHHhhhccccCCCCCCEE
Confidence 6788999999753 3468888877774 2222332 2334321 113554 3333333333222111 589877
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee--ccccccccCC
Q 001684 835 IFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQK--RHHTRLFPYD 888 (1030)
Q Consensus 835 IiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~K--rh~tRff~~~ 888 (1030)
|| || +.||+..+ .+++.++ +....|.+|-..| ||.+++|..+
T Consensus 455 li--DG-GkgQl~aa--------~~~l~~l-g~~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 455 LI--DG-GKGQLNAA--------LEVLKSL-GVVNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred EE--eC-CHHHHHHH--------HHHHHHc-CCCCCCcEEEEEecCCCceEEEeCC
Confidence 76 88 67887654 4455555 2211366777777 7777887644
No 22
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=69.81 E-value=37 Score=42.41 Aligned_cols=110 Identities=23% Similarity=0.299 Sum_probs=62.8
Q ss_pred CCeEEEEEEecCCCCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHH---cCCCCcEE
Q 001684 758 EPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHE---LNKLPRRI 834 (1030)
Q Consensus 758 ~~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~---~~~lP~~I 834 (1030)
-|..|-++|+||-.. .-.|+++|.-.|..-..+.+-.+.+.... .-++|+..| .|.|...+.. ...+|+=|
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~G~p~k~~YR~f~ik~~~-~~~DD~asM-~Evl~RR~~r~~~~~~~PDLi 526 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKNGAPDTKNYRLFNLRAHD-TRIDDFASM-REAIARRYTHTPEGYTLPDLI 526 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEECCccChhhCCeeeccCCC-CCCchHHHH-HHHHHHHhhcccccCCCCCEE
Confidence 467899999999753 34688888877741112222234443311 113665443 3444333332 13589977
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccC
Q 001684 835 IFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPY 887 (1030)
Q Consensus 835 IiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~~ 887 (1030)
|| || +-||+..+ ++++.++ + -.|.+|-..||.-.-|+|.
T Consensus 527 lI--DG-GkgQl~aa--------~~vl~el-g--l~i~vigLaKr~e~i~~~~ 565 (691)
T PRK14672 527 LV--DG-GIGHVSAA--------QHVLDAL-G--LSIPLVGLAKRAEELFIPN 565 (691)
T ss_pred EE--eC-CHHHHHHH--------HHHHHHc-C--CCCcEEEEEecccEEEeCC
Confidence 76 77 66776644 4555555 2 2477888889764444443
No 23
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=65.22 E-value=52 Score=40.16 Aligned_cols=106 Identities=24% Similarity=0.407 Sum_probs=59.6
Q ss_pred CeEEEEEEecCCCCCCCCCCeEEEEEEeecC-CCcceeeEEEEEecCceeeeecHh---hHHHHHHHHHHHHcCCCCcEE
Q 001684 759 PVIFMGADVTHPHPLDDFSPSVAAVVGSMNW-PAANKYASRMRSQTHRQEIIQDLG---VMVGELLDDFYHELNKLPRRI 834 (1030)
Q Consensus 759 ~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~-~~~~ky~s~~~~Q~~~~Eii~~l~---~~~~~~L~~f~~~~~~lP~~I 834 (1030)
|.-|-|+|+||-.. .-.|+++|.-.|. |.-..| -.+.+... +-.+|.. +++..++..+.+..+.+|+=|
T Consensus 366 p~rIE~fDiSh~~G----~~~V~smVvf~~G~p~k~~Y-R~f~Ik~~--~~~dDy~~m~Evl~RR~~r~~~~~~~~PDLi 438 (519)
T PRK12306 366 PNVIECFDISHLSG----TSTVGSMVQFRNGKPDKKNY-RRFKIKTV--EGIDDFASIAEVVRRRYSRLLEENSELPDLI 438 (519)
T ss_pred CCeEEEEECCccCC----CCceEEEEEEeCCccChhhc-CeeecCCC--CCCCHHHHHHHHHHHHHhhcccccCCCCCEE
Confidence 45789999999653 3468888877774 222223 23444321 1135543 333333332221112489877
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001684 835 IFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFP 886 (1030)
Q Consensus 835 IiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~ 886 (1030)
|| || +-||+..+ .+++.++ +. .|.+|-..|+. .++|.
T Consensus 439 lI--DG-GkgQl~aa--------~~~l~el-g~--~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 439 VI--DG-GKGQLSSA--------FKELRKL-GL--KIPLISIAKRE-EEIYV 475 (519)
T ss_pred EE--eC-CHHHHHHH--------HHHHHHc-CC--CCcEEEEEcCc-eEEEe
Confidence 76 77 67887654 4455555 22 47788888876 44544
No 24
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=64.88 E-value=62 Score=39.99 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCeEEEEEEecCCCCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHH--c--CCCCcE
Q 001684 758 EPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHE--L--NKLPRR 833 (1030)
Q Consensus 758 ~~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~--~--~~lP~~ 833 (1030)
.|.-|-++|+||-.. .-.|+++|.-.|....-+.+-.+.+........+|... |.+.|...++. . +.+|+=
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YRkf~ik~~~~~~~DD~a~-M~Evl~RR~~r~~~~~~~~PDL 431 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKMGKPFKDGYRVYKINSLLKGEIDDFKA-IKEVISRRYSKLINEQLELPNL 431 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCCeeeccCCCCCCCCHHHH-HHHHHHHHHhhcccccCCCCCE
Confidence 356899999999753 34688888877742112222234443211111355433 33333333322 1 258997
Q ss_pred EEEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001684 834 IIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFP 886 (1030)
Q Consensus 834 IIiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~ 886 (1030)
||| || +.||+..+ .+++.++ +....|.+|-..|+--+ +|-
T Consensus 432 ilI--DG-GkgQl~aa--------~~vl~~l-g~~~~i~v~gLaK~~e~-i~~ 471 (574)
T PRK14670 432 ILI--DG-GKGQLNAA--------YSILKGL-KIENKVKVCALAKKEET-IFL 471 (574)
T ss_pred EEE--eC-CHHHHHHH--------HHHHHHc-CCCCCceEEEEecCCeE-EEe
Confidence 776 88 67887654 4555555 22223778888886644 443
No 25
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=62.43 E-value=42 Score=41.88 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=59.4
Q ss_pred CeEEEEEEecCCCCCCCCCCeEEEEEEeecC-CCcceeeEEEEEecCceeeeecHh---hHHHHHHHHHHHHcCCCCcEE
Q 001684 759 PVIFMGADVTHPHPLDDFSPSVAAVVGSMNW-PAANKYASRMRSQTHRQEIIQDLG---VMVGELLDDFYHELNKLPRRI 834 (1030)
Q Consensus 759 ~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~-~~~~ky~s~~~~Q~~~~Eii~~l~---~~~~~~L~~f~~~~~~lP~~I 834 (1030)
|.-|-++|+||-.. .-.|+++|.-.|. |.-..|. .+.+... +-.+|.. +++..++..+.+....+|+=|
T Consensus 396 p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-kf~Ik~~--~~~DDya~M~Evl~RR~~r~~~~~~~~PDLi 468 (624)
T PRK14669 396 PSRIECFDISHIQG----AETVASMVVWEDGKMKKSDYR-KFIIKTV--VGVDDFASMREVVTRRYSRLQEEKQPMPGLV 468 (624)
T ss_pred CCeEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeecCCC--CCCCHHHHHHHHHHHHhhccccccCCCCCEE
Confidence 46899999999653 3468888877774 2222222 3334321 1135543 333333322222112489977
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001684 835 IFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFP 886 (1030)
Q Consensus 835 IiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~ 886 (1030)
|| || +-||+..+ .+++.++ +.. .|.+|-..|+.. ++|-
T Consensus 469 lI--DG-GkgQl~aa--------~~vl~el-gl~-~i~vigLaK~~e-~i~~ 506 (624)
T PRK14669 469 LI--DG-GLGQLHAA--------AEALEAI-GIT-DQPLASIAKREE-IIYV 506 (624)
T ss_pred EE--eC-CHHHHHHH--------HHHHHHc-CCC-CCcEEEEecCCe-EEEC
Confidence 76 88 67887654 4555555 221 266788888764 4554
No 26
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=57.02 E-value=54 Score=40.83 Aligned_cols=100 Identities=24% Similarity=0.335 Sum_probs=56.3
Q ss_pred CCeEEEEEEecCCCCCCCCCCeEEEEEEeecC-CCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHH----cCCCCc
Q 001684 758 EPVIFMGADVTHPHPLDDFSPSVAAVVGSMNW-PAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHE----LNKLPR 832 (1030)
Q Consensus 758 ~~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~-~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~----~~~lP~ 832 (1030)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|. .+.+... +-.+|... |.|.|...+.. .+.+|+
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dDya~-m~Evl~RR~~~~~~~~~~~PD 453 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFEDGGPDKSEYR-RYNIKGV--TGGDDYAA-MREVLTRRYSRLLKEFGPLPD 453 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEECCccChhhCC-eeecCCC--CCCCHHHH-HHHHHHHHhhccccccCCCCC
Confidence 356889999999653 3478888877774 2222332 3444431 11355433 33333333222 246899
Q ss_pred EEEEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeec
Q 001684 833 RIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKR 879 (1030)
Q Consensus 833 ~IIiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Kr 879 (1030)
=||| || +-||+..+ .+++.++ +. .|.+|-..|.
T Consensus 454 Lili--DG-GkgQl~~a--------~~~l~~l-g~--~i~v~glaK~ 486 (598)
T PRK00558 454 LILI--DG-GKGQLNAA--------KEVLEEL-GL--DIPVVGLAKG 486 (598)
T ss_pred EEEE--eC-CHHHHHHH--------HHHHHHC-CC--CCcEEEEEec
Confidence 7776 88 67887654 4455555 22 3566666663
No 27
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=55.90 E-value=76 Score=39.68 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=61.0
Q ss_pred CeEEEEEEecCCCCCCCCCCeEEEEEEeecC-CCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHH---cCCCCcEE
Q 001684 759 PVIFMGADVTHPHPLDDFSPSVAAVVGSMNW-PAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHE---LNKLPRRI 834 (1030)
Q Consensus 759 ~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~-~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~---~~~lP~~I 834 (1030)
|.-|-|+|+||-.. .-.|+++|.-.|. |.-..|. .+.+... +-.+|...|-.-..+.|.+. .+.+|+=|
T Consensus 415 p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~ik~~--~~~dDy~~m~Evl~RR~~r~~~~~~~~PDLi 487 (621)
T PRK14671 415 PRRIECFDNSHFQG----TDYVSSMVCFVDGKPKKSDYR-KFKLRSF--EGSDDYAAMREVVTRRYSGSLAEELPLPDLI 487 (621)
T ss_pred CCEEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeecCCC--CCCCHHHHHHHHHHHHhhccccccCCCCCEE
Confidence 46789999999753 3468888877774 2222332 3444321 11366544333333333331 12589977
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeeccccccccC
Q 001684 835 IFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPY 887 (1030)
Q Consensus 835 IiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~~ 887 (1030)
|| || +-||+..+ .+++.++ + -.|.+|-..||. .++|..
T Consensus 488 lI--DG-GkgQl~aa--------~~vl~~l-g--~~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 488 VI--DG-GKGQVNSA--------WKVLQEL-G--LSVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred EE--eC-CHHHHHHH--------HHHHHHc-C--CCCcEEEEEecc-cEEEeC
Confidence 76 88 67887644 4555555 2 246788888844 445543
No 28
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=54.55 E-value=26 Score=43.47 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=17.3
Q ss_pred ccccCCCCCCCCCCceEEEEeeEEEEeeC
Q 001684 162 LVAARRPDAGGVEGAVISLLANHFLVQLD 190 (1030)
Q Consensus 162 ~~~p~RP~~Gt~~G~~I~L~tN~F~v~~~ 190 (1030)
....+|+..+. =.+-.+.-|+|.|..+
T Consensus 623 e~~Mrr~nW~k--I~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 623 EVPMRRFNWSK--IVPRDLSENCFWVKVN 649 (1102)
T ss_pred CCccccCCccc--cCccccCccceeeecc
Confidence 34456666655 3455677888888874
No 29
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=53.32 E-value=94 Score=38.40 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=60.3
Q ss_pred CeEEEEEEecCCCCCCCCCCeEEEEEEeecC-CCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHH---cCCCCcEE
Q 001684 759 PVIFMGADVTHPHPLDDFSPSVAAVVGSMNW-PAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHE---LNKLPRRI 834 (1030)
Q Consensus 759 ~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~-~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~---~~~lP~~I 834 (1030)
|.-|-++|+||-.. .-.|+++|.-.|. |.-..| -.+.+... +-.+|...|-.-.-+.|.+. .+.+|+=|
T Consensus 361 p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~Y-R~f~i~~~--~~~dD~~~m~Evl~RR~~r~~~~~~~~PDLi 433 (567)
T PRK14667 361 PERIEGFDISHFYG----EFTVGSCVVWEDGSMNKKEY-RRYKIKTV--DGIDDYASLREVLTRRARRYKEGENPMPDLW 433 (567)
T ss_pred CCeEEEEECcccCC----CcceEEEEEEECCccChhhC-CeeecCCC--CCCCHHHHHHHHHHHHhhhccccCCCCCCEE
Confidence 46789999999653 3478888887774 222223 23444331 12466543333333333331 12489977
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001684 835 IFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFP 886 (1030)
Q Consensus 835 IiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~ 886 (1030)
|| || +-||+..+ .+++.++ +. +|.+|-..|+. .++|.
T Consensus 434 li--DG-GkgQl~aa--------~~~l~~l-g~--~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 434 LI--DG-GKGQLSVG--------IEVRDRL-GL--NIKVFSLAKKE-EILYT 470 (567)
T ss_pred EE--eC-CHHHHHHH--------HHHHHHc-CC--CCcEEEEEecC-cEEEc
Confidence 76 87 67887644 4455555 22 46678888865 44553
No 30
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=50.05 E-value=73 Score=39.47 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=57.6
Q ss_pred CeEEEEEEecCCCCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeeeec---HhhHHHHHHHHHHHHc--CCCCcE
Q 001684 759 PVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQD---LGVMVGELLDDFYHEL--NKLPRR 833 (1030)
Q Consensus 759 ~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~---l~~~~~~~L~~f~~~~--~~lP~~ 833 (1030)
|.-|-++|+||-.. .-.|+++|.-.|..-.-+.+-.+.+.. + .+| |.+++..++..+.+.. +.+|+=
T Consensus 375 p~rIE~fDiSh~~G----~~~V~s~Vvf~~G~~~k~~YR~f~i~~-~---~dD~~~m~Evl~RR~~r~~~~~~~~~~PDL 446 (577)
T PRK14668 375 PERIEGFDVSHAQG----RAVVGSNVCFVDGSAETADYRRKKLTE-R---NDDYANMRELVRWRAERAVEGRDDRPDPDL 446 (577)
T ss_pred CCEEEEEECCccCC----CCceEEEEEEECCccCHHHcCeecCCC-C---CChHHHHHHHHHHHHHhhhccccCCCCCCE
Confidence 45789999999753 346888888777411122222344443 1 355 4444444444333211 258997
Q ss_pred EEEEeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecc
Q 001684 834 IIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRH 880 (1030)
Q Consensus 834 IIiYRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh 880 (1030)
||| || +-||+..+ .+++.++ +. .|.+|-..|+.
T Consensus 447 ili--DG-G~gQl~aa--------~~~l~el-g~--~i~v~glaK~~ 479 (577)
T PRK14668 447 LLI--DG-GDGQLGAA--------RDALAET-GW--DVPAIALAKAE 479 (577)
T ss_pred EEE--eC-CHHHHHHH--------HHHHHHc-CC--CCcEEEEEcCC
Confidence 776 77 67787644 4555555 22 46678788855
No 31
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=49.06 E-value=3.4e+02 Score=29.07 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhc
Q 001684 944 DNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRG 986 (1030)
Q Consensus 944 e~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~ 986 (1030)
.+..+.+..-+|+.+||-. .++|.|+..||.+|.+.
T Consensus 176 g~~i~l~sal~l~~~l~~~-------~rlpeptr~ad~~a~~~ 211 (212)
T COG1515 176 GHRISLPSALKLAQRLSKG-------YRLPEPTRLADILAKKR 211 (212)
T ss_pred CCccCHHHHHHHHHHHccc-------ccCCCcccHHHHhhhhc
Confidence 4456888888898887643 68999999999998764
No 32
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=47.55 E-value=83 Score=33.61 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHH
Q 001684 946 KFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAA 983 (1030)
Q Consensus 946 ~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a 983 (1030)
..+.+..-+++.++|-. -.++|.|++.||+++
T Consensus 175 ~i~l~ta~~iv~~~~~~------~~r~PeP~r~Ad~~t 206 (206)
T PF04493_consen 175 RISLETALEIVLKLCKG------GYRLPEPTRLADLLT 206 (206)
T ss_dssp SS-HHHHHHHHHHTSST------TSSS-HHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCC------CCcCCCcchhhhhcC
Confidence 56888888888887754 148999999999863
No 33
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=45.32 E-value=1.4e+02 Score=37.60 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=56.5
Q ss_pred CCeEEEEEEecCCCCCCCCCCeEEEEEEeecC-CCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHHcCCCCcEEEE
Q 001684 758 EPVIFMGADVTHPHPLDDFSPSVAAVVGSMNW-PAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIF 836 (1030)
Q Consensus 758 ~~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~-~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~~~~lP~~IIi 836 (1030)
.|.-|-++|+||-+. .-.++|+|.-.|. |.-..|. .+.+-.. + .+|...|-.-+-+.|.+ ...+|+=|||
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~G~p~k~~YR-~f~i~~~--~-~dD~~~m~ev~~RR~~~-~~~~PDLili 541 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFEDGKPARDAYR-TYAFEDG--E-GDDYGTLAAWAGRRVES-GPPWPDLLLV 541 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEECCccChhhCC-eeeCCCC--C-CChHHHHHHHHHHHhcC-CCCCCCEEEE
Confidence 356789999999753 3467888877774 2222232 2334322 2 26654444333333432 2358987776
Q ss_pred EeCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEee
Q 001684 837 FRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQK 878 (1030)
Q Consensus 837 YRDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~K 878 (1030)
|| +.||+..+ .+++.++ +....|.+|-..|
T Consensus 542 --DG-G~gQl~aa--------~~~l~e~-g~~~~~~v~~laK 571 (694)
T PRK14666 542 --DG-GRGQLAAV--------VRALEEA-GMGGLFAVASIAK 571 (694)
T ss_pred --cC-CHHHHHHH--------HHHHHHc-CCCCCccEEEEec
Confidence 77 67887654 4455555 2221366777777
No 34
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=39.32 E-value=1.1e+02 Score=29.62 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 665 ESKLKKIHEAASNNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 665 e~~l~~i~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
.+.++.+.+. ...+.|+++.+.++... |...|...+.++||.+..+... .....+-+...+.++|.-
T Consensus 17 ~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~--~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 17 KEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELP--EDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE---TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECC--CCcCHHHHHHHHHHHhCC
Confidence 3334444333 23577887777666544 9999988899999999988763 222345667778888754
No 35
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.96 E-value=34 Score=42.50 Aligned_cols=7 Identities=29% Similarity=0.671 Sum_probs=3.0
Q ss_pred eeHHHHH
Q 001684 461 IRLLSYF 467 (1030)
Q Consensus 461 iSV~dYF 467 (1030)
.|+.-|.
T Consensus 861 ~TLLHfL 867 (1102)
T KOG1924|consen 861 TTLLHFL 867 (1102)
T ss_pred hHHHHHH
Confidence 4544433
No 36
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=35.20 E-value=2.8e+02 Score=34.51 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=61.0
Q ss_pred CeEEEEEEecCCCCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeeeecHhhHHHHHHHHHHHH-cCCCCcEEEEE
Q 001684 759 PVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHE-LNKLPRRIIFF 837 (1030)
Q Consensus 759 ~tMiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~l~~~~~~~L~~f~~~-~~~lP~~IIiY 837 (1030)
|.-|-++|.||... .-.|+++|...|..-..+.+-.+.+.. +-.+|...|..-.-+.|.+. ...+|+=|+|
T Consensus 379 p~rIE~~D~Sh~~g----~~~V~smvvf~~g~~~k~~YRry~i~~---~~~dDya~m~evl~RR~~~~~~~~~Pdli~i- 450 (581)
T COG0322 379 PYRIECFDISHIQG----EDTVGSMVVFEDGGPSKKDYRRYNIKI---TGGDDYASMREVLTRRYSRLLKEELPDLILI- 450 (581)
T ss_pred ceeEEEeecCcccc----ccceeEEEEEcCCCCChhhcccccccC---CCCchHHHHHHHHHHHhhhccccCCCCEEEE-
Confidence 45678999999753 235777777666411112222222221 11466665555555566554 3389976665
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 001684 838 RDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFP 886 (1030)
Q Consensus 838 RDGVSEgQ~~~Vl~~Ev~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~ 886 (1030)
|| +-||+..+ ++++.++ +.. +-+|-+.|+-.+-|++
T Consensus 451 -DG-GkgQl~~a--------~~vl~~l-~~~--~~viglaK~~~~~~~~ 486 (581)
T COG0322 451 -DG-GKGQLNAA--------KEVLKEL-GLD--IPVIGLAKGEEELLLP 486 (581)
T ss_pred -eC-CHHHHHHH--------HHHHHHc-CCC--ccEEEEEecCceeEec
Confidence 77 67887654 4555555 222 2278888887744444
No 37
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.50 E-value=1.8e+02 Score=32.90 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 666 SKLKKIHEAASNNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 666 ~~l~~i~~~~~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
+.++.+.++....+.|+++.+.++... |...|...+.+.||.+..+.... .....-+.+++.++|.-
T Consensus 19 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 87 (293)
T PRK14185 19 AEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYES--DVTEEELLAKVRELNQD 87 (293)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 334444333234578888877766554 99999989999999998876542 12233456777788753
No 38
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.34 E-value=2e+02 Score=32.24 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeec-cccCcchHHHHHHHHHHHhh--cCCceeee
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYS-NLGKLSSQFLANLALKINAK--VGGCTVAL 742 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-t~~k~~~q~~~Ni~lKINaK--LGG~n~~l 742 (1030)
.+.|+++.+-++... |..+|...+.+.||.+..+... .+ ...-+..++.++|.. .-|++.++
T Consensus 33 ~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~---~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 33 TPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQET---TTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 577888877766554 9999999999999999888763 22 233467888888875 67887765
No 39
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.86 E-value=2.4e+02 Score=31.87 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
.+.|+++.+.++... |...|...+.+.||.+..+.... .....-+..++.++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 32 FPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPS--TISESSLIEKINELNND 88 (294)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 577888777766554 99999989999999998887641 12233466778888754
No 40
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.29 E-value=2.4e+02 Score=31.78 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHh
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINA 733 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINa 733 (1030)
..+.|+++...++... |...|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 31 ASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLST--TIHTNDLISKINELNL 87 (288)
T ss_pred CCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 3577887777666554 99988888899999998876541 1223446677777764
No 41
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.57 E-value=2.6e+02 Score=31.53 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=43.5
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh--cCCceee
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK--VGGCTVA 741 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK--LGG~n~~ 741 (1030)
..+.|+++.+.++... |...|...+.+.||.+..+.... .....-+.+++.++|.- .-|+-..
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIlvq 94 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPE--STSQEELLELIARLNADPEVDGILVQ 94 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 4577888877766554 99999999999999998876541 12233466778888864 3455443
No 42
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.49 E-value=2.5e+02 Score=31.62 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=43.1
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh--cCCceee
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK--VGGCTVA 741 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK--LGG~n~~ 741 (1030)
..+.|+++.+-++... |...|...+.+.||.+..+.... .....-+.+.+.++|.- .-|+-..
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~d~~V~GIlvq 96 (286)
T PRK14184 30 RAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPA--DTTQEELEDLIAELNARPDIDGILLQ 96 (286)
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCcCceEEEe
Confidence 3577887777666554 99999889999999998876541 12234466778888853 3455443
No 43
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.52 E-value=2.6e+02 Score=31.47 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=39.4
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
.+.|+++...++.+. |...|...+.+.||.+..+....- ....-+.+++.++|.-
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH--TTESELLELIDQLNND 87 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 577888777766554 999998889999999988865421 2233466777888743
No 44
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.21 E-value=3e+02 Score=30.90 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=43.0
Q ss_pred cCCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhhc--CCcee
Q 001684 676 SNNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKV--GGCTV 740 (1030)
Q Consensus 676 ~~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaKL--GG~n~ 740 (1030)
...+.|+++.+-++... |...|...+.+.||.+..+.... .....-+...+.++|.-- -|+-.
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIlv 90 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPG--DATTRTVLERIRRLNEDPDINGILV 90 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 34578888777766554 99999889999999998876541 122334567778887543 45443
No 45
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.66 E-value=3.1e+02 Score=30.93 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=42.5
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh--cCCcee
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK--VGGCTV 740 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK--LGG~n~ 740 (1030)
.+.|+++.+-++.+. |...|...+.+.||.+-.+.... .....-+.+.+.++|.- .-|+-.
T Consensus 38 ~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~LN~D~~V~GIlv 102 (287)
T PRK14176 38 TPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPA--DTTQEELLELIDSLNKRKDVHGILL 102 (287)
T ss_pred CCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 577888877766554 99999989999999998876541 12234466778888853 235544
No 46
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.52 E-value=3e+02 Score=31.01 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=39.8
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHh
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINA 733 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINa 733 (1030)
..+.|+++.+.++... |...|...+.+.||.+-.+.... .....-+..++.++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPS--DATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 4678888877766554 99999999999999998876541 1223345677888874
No 47
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.22 E-value=2.9e+02 Score=31.33 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh--cCCceee
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK--VGGCTVA 741 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK--LGG~n~~ 741 (1030)
.+.|+++...++... |...|...+.+.||.+-.+... ......-+.+++.++|.- .-|+-..
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~--~~~~~~el~~~I~~lN~D~~V~GIivq 97 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLP--ADTSQAEVEALIAQLNQDERVDGILLQ 97 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECC--CCCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 467888777666544 9999988999999999887653 112233466778888864 3455443
No 48
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.08 E-value=2.8e+02 Score=31.10 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=38.9
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHh
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINA 733 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINa 733 (1030)
.+.|+++.+.++... |...|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPS--TISQKEILETIAMMNN 86 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 577888877766554 99999989999999998876531 1223346677778874
No 49
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.02 E-value=3e+02 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=39.3
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
.+.|+++...++... |...|...+.+.||.+-.+.... .....-+.+++.++|.-
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPA--DTSQAELLALIARLNAD 88 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 577888877766554 99999889999999987775431 12233456788888765
No 50
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.89 E-value=2.8e+02 Score=31.28 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh--cCCceee
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK--VGGCTVA 741 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK--LGG~n~~ 741 (1030)
.+.|+++.+-++... |...|...+.+.||.+..+.... .....-+...+.++|.- .-|+-..
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~d~~V~GIlvq 98 (285)
T PRK10792 33 APGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPE--TTSEAELLALIDELNADPTIDGILVQ 98 (285)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 467887777666544 99999889999999998886641 12233456777888865 2355443
No 51
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=23.78 E-value=3.2e+02 Score=31.04 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
..+.|+++.+-++... |...|...+.+.||.+-.+... ......-+...+.++|.-
T Consensus 38 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~--~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 38 KVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLP--ENISEAELISKVHELNAN 95 (299)
T ss_pred CCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECC--CCCCHHHHHHHHHHHhCC
Confidence 3567887777666554 9999988899999998887653 112233456777777754
No 52
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.39 E-value=3.2e+02 Score=30.74 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=43.3
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHh--hcCCceee
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINA--KVGGCTVA 741 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINa--KLGG~n~~ 741 (1030)
.+.|+++..-++.+. |...|...+.+.||.+..+.... .....-+.+.+.++|. ..-|+-..
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~D~~V~GIlvq 98 (284)
T PRK14177 33 IPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKE--QTTTEELLGVIDKLNLDPNVDGILLQ 98 (284)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCCCCeEEEc
Confidence 467887777666544 99999888999999998887541 1233456678888886 44565443
No 53
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=22.90 E-value=3.1e+02 Score=31.89 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=38.7
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHh
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINA 733 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINa 733 (1030)
..+.|+++.+.++... |...|...+.+.||.+..+... ......-+.+++.++|.
T Consensus 102 ~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lp--e~~te~ell~~I~~LN~ 158 (364)
T PLN02616 102 VVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLP--EDSTEQEVLKFISGFNN 158 (364)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECC--CCCCHHHHHHHHHHHcC
Confidence 3577888877766554 9999988999999998777543 11223345677777774
No 54
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=22.79 E-value=3.1e+02 Score=31.74 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=39.6
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
..+.|+++.+-++.+. |...|...+.+.||.+-.+.... .....-+..++.++|.-
T Consensus 85 ~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~--~~te~ell~~I~~lN~D 142 (345)
T PLN02897 85 KVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPE--DCTEGQILSALRKFNED 142 (345)
T ss_pred CCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 3577888877766554 99999989999999998876541 12223456777888743
No 55
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.44 E-value=3.1e+02 Score=31.02 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=38.6
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
..+.|+++..-++... |...|...+.+.||.+-.+... ......-+...+.++|.-
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~--~~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 32 KVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQS--VDITEEELLALIDKYNND 89 (297)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--CCCCHHHHHHHHHHHhCC
Confidence 3577888777666554 9999998999999998776543 112233455677788753
No 56
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.37 E-value=3.3e+02 Score=30.86 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=39.5
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
.+.|+++.+.++... |...|...+.+.||.+-.+.... .....-+.+.+.++|.-
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 31 VPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPA--DTTEEHLLKKIEDLNND 87 (295)
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 577888877766554 99999989999999997776541 12233456777888754
No 57
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=22.17 E-value=91 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=17.8
Q ss_pred HhhHHHHHHHHHHHHcCCCCcEEEE
Q 001684 812 LGVMVGELLDDFYHELNKLPRRIIF 836 (1030)
Q Consensus 812 l~~~~~~~L~~f~~~~~~lP~~IIi 836 (1030)
+.+|+ ..+..|...+|++|..|-|
T Consensus 10 ~~d~a-~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 10 YLDMA-SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHH-HHHHHHHHHcCCCCCeeeC
Confidence 44444 5567899999999998743
No 58
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.96 E-value=3.1e+02 Score=30.81 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHh
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINA 733 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINa 733 (1030)
..+.|+++.+.++.+. |...|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 29 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 29 IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNE--NTTQNELLALINTLNH 85 (282)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 3567877777666554 99999889999999998887642 1223346677778875
No 59
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.63 E-value=3.4e+02 Score=30.55 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=42.4
Q ss_pred CCCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh--cCCcee
Q 001684 677 NNLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK--VGGCTV 740 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK--LGG~n~ 740 (1030)
..+.|+++.+.++... |...|...+.+.||.+-.+.... .....-+...+.++|.- .-|+-.
T Consensus 29 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIlv 94 (282)
T PRK14169 29 VTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPE--ATTQADLLAKVAELNHDPDVDAILV 94 (282)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3577888877766554 99999999999999998876541 12233466778888753 245443
No 60
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.41 E-value=3.6e+02 Score=30.34 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=39.3
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhh
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAK 734 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaK 734 (1030)
.+.|+++...++... |...|...+.+.||.+..+.... .....-+.+.+.++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPA--DATQEELNAVIDELNAD 88 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 577887777766554 99999989999999998876541 12233456777888754
No 61
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.18 E-value=3.6e+02 Score=30.62 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=39.0
Q ss_pred CCcEEEEEEecCCcc--HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHh
Q 001684 678 NLQLLICVMERKHKG--YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINA 733 (1030)
Q Consensus 678 ~~~lvlvIlp~~~~~--Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINa 733 (1030)
.+.|+++.+.++... |...|...+.+.||.+-.+... ......-+.+.+.++|.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~--~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLP--ADTSQARLLALIAELNA 88 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECC--CCCCHHHHHHHHHHHcC
Confidence 578888887776654 9999998999999999777653 12223345677777774
No 62
>PRK00766 hypothetical protein; Provisional
Probab=20.08 E-value=1.6e+02 Score=31.22 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhc
Q 001684 945 NKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRG 986 (1030)
Q Consensus 945 ~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~ 986 (1030)
.+++.++-.+++-.+|.-| ++|.|+..||++|...
T Consensus 152 ~gi~l~~A~~lv~~~~~~~-------riPEPlR~Ahlia~~~ 186 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTRS-------LIPEPLRLAHLIASGV 186 (194)
T ss_pred cCCCHHHHHHHHHHhccCC-------CCchhhHHHHHHHHHh
Confidence 4678999999999888643 7899999999997543
Done!