Query 001684
Match_columns 1030
No_of_seqs 209 out of 1128
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:43:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001684.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_981-984//hhsearch_pdb/001684hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1522.4 72.0 829 158-1030 21-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1403.3 60.7 853 158-1030 13-1046(1046)
3 1yvu_A Hypothetical protein AQ 1.0 1 1 834.1 35.1 657 181-993 6-696 (706)
4 2yhb_A QDE-2, post-transcripti 1.0 1 1 807.2 21.7 414 595-1030 2-437 (437)
5 1u04_A Argonaute, hypothetical 1.0 1 1 749.8 35.3 665 176-994 2-760 (771)
6 3ho1_A Argonaute; argonaute, p 1.0 1 1 677.9 46.2 639 176-988 5-669 (685)
7 2yha_A Post-transcriptional ge 1.0 1 1 662.9 23.0 363 595-1030 2-388 (388)
8 2w42_A PIWI, putative uncharac 1.0 1 1 457.1 15.8 360 567-991 5-406 (427)
9 1vyn_A Argonaute2; nucleic aci 1.0 1 1 213.6 8.0 137 383-525 2-143 (143)
10 4g0o_A Protein argonaute 5; MI 1.0 1 1 203.4 11.2 138 597-742 2-139 (139)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1522.35 Aligned_cols=829 Identities=38% Similarity=0.657 Sum_probs=713.8
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEECCC-CCHHHHHHHHHHHHHHH-HCCCCCCCEEECC
Q ss_conf 544533567999997899469999257897628998179999998769-99789999999999985-3003898405508
Q 001684 158 KTQALVAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPS-PSKEVARLIKQKLVEEN-SSMLSGAYPAFDG 235 (1030)
Q Consensus 158 ~~~~~~~~~RP~~Gt~~G~~I~l~tN~F~i~~~~~~~iy~YdV~i~p~-~~k~~~R~i~~~l~~~~-~~~f~~~~~vyDG 235 (1030)
++....+|+|||+|+ .|++|.|+||||++++ +++.+|||||+|.|+ .++++.|++++++++.+ .+.|++..+||||
T Consensus 21 ~~~~~~~p~RPg~Gt-~G~~i~l~aN~F~v~~-~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG 98 (861)
T 4f3t_A 21 QGYAFKPPPRPDFGT-SGRTIKLQANFFEMDI-PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDG 98 (861)
T ss_dssp ----CCCCBCCCCCC-CSEEEEEEESEEEEEC-CSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECS
T ss_pred CCCCCCCCCCCCCCC-CCCEEEEEEEEEEEEC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 454566798997898-8847899955699877-88862650378478767677999999999987556650686078758
Q ss_pred CCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 71022033357984489999026888787899822343201257838999999622204577878620389999999445
Q 001684 236 RKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQD 315 (1030)
Q Consensus 236 ~k~LyS~~~L~~~~~~~~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~V~Ik~~~~i~~~~L~~~l~~~~~d~~~~~~~ 315 (1030)
+++|||+.+||.+....++.+.. .++ .+++.|+|+|++++++++.+|.+|+.++..+ .+++
T Consensus 99 ~~~l~s~~~L~~~~~~~~~~v~~--------~~~--------~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~---~~~~ 159 (861)
T 4f3t_A 99 RKNLYTAMPLPIGRDKVELEVTL--------PGE--------GKDRIFKVSIKWVSCVSLQALHDALSGRLPS---VPFE 159 (861)
T ss_dssp SSEEEESSCCSCSSCEEEEECCC-----------------------CEEEEEEEEEEEEHHHHHHHHHTCSSS---CCHH
T ss_pred CCEEEECCCCCCCCCCEEEEEEC--------CCC--------CCCCEEEEEEEEEEECCHHHHHHHHCCCCCC---CCHH
T ss_conf 63178887678778636999863--------788--------9872799999990243889999996499878---8289
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEEEECCCEEEEECCCCCEEECCCCHHHHHHHH
Q ss_conf 79999999706998885232455458999995215994899962057673204612442106400142147769999999
Q 001684 316 YLHALDVVLRENPSEKCIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKR 395 (1030)
Q Consensus 316 ~iq~Lniilr~~~~~~~~~vGrsfF~~~~~~~~~lg~Gle~~~Gf~~SvR~~~~~l~LniDvs~~~F~~~~~l~d~l~~~ 395 (1030)
+||+||||||+.+++++..+||+||++..+...++|+|+|+|+||++|||+++++|+||+|+++++|+++++|+|++.++
T Consensus 160 ~iq~Lniilr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~ 239 (861)
T 4f3t_A 160 TIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEV 239 (861)
T ss_dssp HHHHHHHHHHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECCCHHHHHHHH
T ss_conf 99999999976221246426877558987750116898799845067898517852785414310276077099999998
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEEECC-CEEEEEEECCCCCCCCCEEE--CCCCC--CEEHHHHHHHH
Q ss_conf 755554332203899913599999760305999964154-00599940344787661553--59997--00199999965
Q 001684 396 LEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRET-VQRYRVYGLTEEVTENLWFA--DRDGK--NIRLLSYFKDH 470 (1030)
Q Consensus 396 l~~~~~~~~~~~r~l~~~~~~kl~k~LkGl~V~~~h~~~-~~~~~I~gis~~~a~~~~F~--~~dG~--~iSVaeYFk~~ 470 (1030)
++.. +. ....+.+.+.++.+++++|+|++|.++|.++ ++.|+|.||++.++.+.+|. .++|+ +|||+|||+++
T Consensus 240 ~~~~-~~-~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~k 317 (861)
T 4f3t_A 240 LDFK-SI-EEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDR 317 (861)
T ss_dssp HTCS-SC-C---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHH
T ss_pred HCCC-CH-HHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEHHHHHHHH
T ss_conf 6345-50-220356577899999998579389983037788659995378899877678765278984168889999875
Q ss_pred CCCCCCCCCCCEEEEC-CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2963346999649816-898621233231002586435999979999998721699999999999854299999988766
Q 001684 471 YNYNIQFRNLPCLQIS-RSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQG 549 (1030)
Q Consensus 471 Yni~L~~p~lPlv~vg-~~k~~ylP~Elc~I~~~Qr~~~kLs~~q~s~mik~a~~~P~eR~~~I~~~~~~~~~~~~~~~l 549 (1030)
|||+|+||+||||++| +++++|||||||.|+|||+++++|+++|+++|||+++..|.+|.+.|.++++.+... .+++|
T Consensus 318 Yni~L~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~-~~~~l 396 (861)
T 4f3t_A 318 HKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFN-TDPYV 396 (861)
T ss_dssp HCCCCSCTTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGG-GCHHH
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-CCHHH
T ss_conf 39524799976388348888752565668940784455668989999999987549799999999999871689-75689
Q ss_pred CCCCEEEECCCEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-CCCCCHHHHH
Q ss_conf 400349704511765499159941218998510035776776422122342255312113999948996-6655088999
Q 001684 550 REFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSH-DQKSAIPKFI 628 (1030)
Q Consensus 550 ~~fGi~I~~~~~~V~aRvL~pP~I~yg~~~~~~~~~p~~~~G~Wnl~~~kf~~~~~i~~W~ii~~~~~~-~~~~~~~~f~ 628 (1030)
++|||+|+++|++|+|||||||+|.|+++++. ...|. +|+||+++++|+.++++++|+++++.... .....++.|+
T Consensus 397 ~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~-~~~~~--~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~ 473 (861)
T 4f3t_A 397 REFGIMVKDEMTDVTGRVLQPPSILYGGRNKA-IATPV--QGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFT 473 (861)
T ss_dssp HHTTCEECSSCEEEEEEECCCCCEECCSSSCC-EECCB--TTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHH
T ss_pred HHCCCEEECCEEEEEEEEECCCEEEECCCCCC-CCCCC--CCCEECCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 97797883875689779825864885687643-33788--7851356988702754440599984575444589999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEE
Q ss_conf 99999998709202578421464333323578137999999999983399739999980699218999998752147023
Q 001684 629 CQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVS 708 (1030)
Q Consensus 629 ~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~~~~Y~~IK~~~~~~~GV~T 708 (1030)
+.|.+.|+.+||.+..+|.+.. .. ...+.+|..++.+.+.. .+++|||||+|++...|+.||++||++.||+|
T Consensus 474 ~~L~~~~~~~G~~i~~~p~~~~-~~-----~~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~T 546 (861)
T 4f3t_A 474 EQLRKISRDAGMPIQGQPCFCK-YA-----QGADSVEPMFRHLKNTY-AGLQLVVVILPGKTPVYAEVKRVGDTVLGMAT 546 (861)
T ss_dssp HHHHHHHHHHTCCBCSCCSEEE-EC-----CSSSSHHHHHHHHHHHS-TTCCEEEEEESSSCTHHHHHHHHHHHTSCCEE
T ss_pred HHHHHHHHHCCCCCCCCCEEEE-EC-----CCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCE
T ss_conf 9999998507865479973777-25-----84578999999998526-89838999958984289999997430678422
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEC
Q ss_conf 76740333575167899999999851298013306889889997667999939999983189999999981899998405
Q 001684 709 QCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMN 788 (1030)
Q Consensus 709 Qci~~~t~~k~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~ip~~~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d 788 (1030)
|||..+++.|.+.|++.||+||||+||||+||.+.+. ..| .+...+|||||+||+||+++....|||||||||+|
T Consensus 547 Qcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~--~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d 621 (861)
T 4f3t_A 547 QCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRP--PVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD 621 (861)
T ss_dssp EEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSC--GGGGSCEEEEEEEEECCC----CCCEEEEEEEECS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEECCCC---CCC--CCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECC
T ss_conf 8997212255567899999999988619833044665---465--34689658998772146888778865999999847
Q ss_pred CCCCCEEEEEEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 8776502389999137611000276589999999999809999579998289892579999999999999998517-999
Q 001684 789 WPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRF-PGY 867 (1030)
Q Consensus 789 ~~~~~ky~s~~~~Q~~~~E~i~~l~~~~~~~L~~f~~~~g~~P~~IIiYRDGVSEgqf~~Vl~~Ei~~Ik~a~~~~-~~~ 867 (1030)
+ ..++|.+.+++|.+++|+|++|++|+.++|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.++ .+|
T Consensus 622 ~-~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~ 700 (861)
T 4f3t_A 622 A-HPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDY 700 (861)
T ss_dssp S-SSCCEEEEEEEESTTCCSCTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred C-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9-856587899975899558998999999999999998289984599992687768899999999999999999854477
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99899999963355544437999998778899899998010044223698640898430786554455169997079988
Q 001684 868 SPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKF 947 (1030)
Q Consensus 868 ~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~~~ 947 (1030)
+|+||||||+||||+|||+.+.++. .+ +.+|++||||||++||+|.+|||||+||.++|||+|||||+||+||+++
T Consensus 701 ~P~it~Ivv~Krh~tRff~~~~~~~--~~--~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~ 776 (861)
T 4f3t_A 701 QPGITFIVVQKRHHTRLFCTDKNER--VG--KSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRF 776 (861)
T ss_dssp CCEEEEEEEECCSCCCEEESSGGGC--BT--TTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCC
T ss_pred CCCEEEEEEECCCCCEEEECCCCCC--CC--CCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCC
T ss_conf 9857999997256635622587533--34--4689898401157502588777999888514136667668998379999
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 988999999997521366689822343003399999860000134776324588-764336-899999998544401347
Q 001684 948 TSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLMGS-SSAICR-AAPPKAAPLPKLSENVKK 1025 (1030)
Q Consensus 948 ~~d~Lq~lTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~~ 1025 (1030)
++|+||+|||+|||+|+|||++||+|||+||||++|+|||.|+......++.++ .++.+. .+......+..+|+++++
T Consensus 777 ~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~ 856 (861)
T 4f3t_A 777 SSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLR 856 (861)
T ss_dssp CHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHT
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999999865521047888776288999999999997511013567766544688766553555445343165515
Q ss_pred CEEEC
Q ss_conf 80419
Q 001684 1026 LMFYC 1030 (1030)
Q Consensus 1026 ~M~y~ 1030 (1030)
+||||
T Consensus 857 ~M~y~ 861 (861)
T 4f3t_A 857 TMYFA 861 (861)
T ss_dssp TTTTC
T ss_pred CCEEC
T ss_conf 83039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1403.26 Aligned_cols=853 Identities=25% Similarity=0.371 Sum_probs=674.1
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCC--------------------CCEEEEEEEECCC------------
Q ss_conf 54453356799999789946999925789762899--------------------8179999998769------------
Q 001684 158 KTQALVAARRPDAGGVEGAVISLLANHFLVQLDPS--------------------QRIFHYNVEMSPS------------ 205 (1030)
Q Consensus 158 ~~~~~~~~~RP~~Gt~~G~~I~l~tN~F~i~~~~~--------------------~~iy~YdV~i~p~------------ 205 (1030)
......+|.|||||| .|++|.|+||||.+.+.++ ..||+|+|+|.|+
T Consensus 13 ~~~~~~~p~Rp~yGt-~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~ 91 (1046)
T 4f1n_A 13 THAIYKVENRHDYGT-KGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVP 91 (1046)
T ss_dssp CCCCCCCCBCCCCCC-CSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC--------------
T ss_pred CCCCCCCCCCCCCCC-CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 611354789998898-9967899963799854777543322111233444333541589988997564566544456676
Q ss_pred ---CCHHHHHHHHHHHHHH--HHCCCCCCCEEECCCCEEEECCCCC---CCCEEEEEEECCCCCCCCCCCCCH-----HH
Q ss_conf ---9978999999999998--5300389840550871022033357---984489999026888787899822-----34
Q 001684 206 ---PSKEVARLIKQKLVEE--NSSMLSGAYPAFDGRKNIYSPVEFE---NDRLEFFVSLPIPTSKSVLPSGEL-----KE 272 (1030)
Q Consensus 206 ---~~k~~~R~i~~~l~~~--~~~~f~~~~~vyDG~k~LyS~~~L~---~~~~~~~V~l~~~~~~~~~~~~~~-----~~ 272 (1030)
.++.+.++|+..|+++ ....+++ .+||||+++|||..+|| .....++|..... ...+++++ ..
T Consensus 92 ~~~~~~~k~~~ii~~ll~e~~~~~~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~---~~~~~~~~~~~~~~~ 167 (1046)
T 4f1n_A 92 PQELSKPKKYELIEALLDEDEILYKYRD-RIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQK---KKVVPGMGAPSNKAS 167 (1046)
T ss_dssp ---CCHHHHHHHHHHHHHSCTTTGGGTT-SEEECSSSEEEESSCGGGSTTCTTCCC------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHCCC-CEEECCCCCEEECCCCCCCCCCCCCEEEECCCC---CCCCCCCCCCCCCCC
T ss_conf 5322123799999999972613564288-604647221687876776535777669865533---446677665443322
Q ss_pred HHH---CCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCCCCC---HHHHHHHHHHHCCCCCCC--C-CCCCC-CCCCC
Q ss_conf 320---12578389999996222045778786203899999994---457999999970699888--5-23245-54589
Q 001684 273 LIH---KQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLP---QDYLHALDVVLRENPSEK--C-IPVGR-SLYSS 342 (1030)
Q Consensus 273 ~~~---~~~~~~~f~V~Ik~~~~i~~~~L~~~l~~~~~d~~~~~---~~~iq~Lniilr~~~~~~--~-~~vGr-sfF~~ 342 (1030)
... .+.+++.|+|+|+++++|++.+|.+|+.++..+ ++.. .+++++|++||++.+... . ..+|+ +||..
T Consensus 168 ~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~-~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~ 246 (1046)
T 4f1n_A 168 LQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTE-VQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIF 246 (1046)
T ss_dssp ----------CGGGGEEEEEEEEEEGGGGGSCSSCCCTT-HHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEEC
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 234555556684599999871051799999997289855-4433341678999999975565535896487578430467
Q ss_pred C-CCCCCCCCCCEEEEECEEEEEEEECCCEEEEECCCCCEEECC-----------------CCHHHHHHHHHHHHH--HH
Q ss_conf 9-999521599489996205767320461244210640014214-----------------776999999975555--43
Q 001684 343 S-MGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHES-----------------VGVIPYLQKRLEFLK--DL 402 (1030)
Q Consensus 343 ~-~~~~~~lg~Gle~~~Gf~~SvR~~~~~l~LniDvs~~~F~~~-----------------~~l~d~l~~~l~~~~--~~ 402 (1030)
. .+...++|+|+|+|+|||+|||+++++|+||||+++++|+++ ++|+|++.++++... +.
T Consensus 247 ~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~ 326 (1046)
T 4f1n_A 247 NNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRD 326 (1046)
T ss_dssp STTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 98775103788179997676667851894089972551117846666765310001356886099999998633333222
Q ss_pred ---HHHHCCCCCHHHH-------HHHHHHCCEEEEEEEEEC-------------CCEEEEEEECCCCCCCCCEEECCCC-
Q ss_conf ---3220389991359-------999976030599996415-------------4005999403447876615535999-
Q 001684 403 ---SQRKTRGLSGDQK-------KEVERALKNIRVFVCHRE-------------TVQRYRVYGLTEEVTENLWFADRDG- 458 (1030)
Q Consensus 403 ---~~~~~r~l~~~~~-------~kl~k~LkGl~V~~~h~~-------------~~~~~~I~gis~~~a~~~~F~~~dG- 458 (1030)
.....+.++..++ .+++++||||+|+++|++ ..+.++|.||+..++.+.+|..++|
T Consensus 327 ~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~ 406 (1046)
T 4f1n_A 327 IRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESS 406 (1046)
T ss_dssp SSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC-------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCC
T ss_conf 22232235787556654456788999998489789998667544556652443466646986346899773199616875
Q ss_pred -------------CCEEHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf -------------7001999999652963346999649816898621233231002586435999979999998721699
Q 001684 459 -------------KNIRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQR 525 (1030)
Q Consensus 459 -------------~~iSVaeYFk~~Yni~L~~p~lPlv~vg~~k~~ylP~Elc~I~~~Qr~~~kLs~~q~s~mik~a~~~ 525 (1030)
++|||+|||+++||++|+||+||||++|.. .+|||||||.|+|||+|+++|++ +++|||+||++
T Consensus 407 ~~~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~-~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~r 483 (1046)
T 4f1n_A 407 LKKNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK-NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIR 483 (1046)
T ss_dssp ----------------CHHHHHHHHSCCCCSCTTSCCEECSTT-TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEECCC-CCCCCCCEEEECCCCCCCCCCCC--HHHHHHHHCCC
T ss_conf 4445666677675278899999987394047999877997897-74213104796689624512351--78999987569
Q ss_pred HHHHHHHHHHHHCC-----CCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCEECCCCCCCC-------CCCCCCCCCCC
Q ss_conf 99999999985429-----9999988766400349704511765499159941218998510-------03577677642
Q 001684 526 PKERKAMIDGVMRG-----PVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIR-------DLVPCRHDRQW 593 (1030)
Q Consensus 526 P~eR~~~I~~~~~~-----~~~~~~~~~l~~fGi~I~~~~~~V~aRvL~pP~I~yg~~~~~~-------~~~p~~~~G~W 593 (1030)
|.+|++.|.+.... +... .++++++|| +|+.+|++|+||||+||.|.|+++.... ...|. +|.|
T Consensus 484 P~eR~~~I~~~~~~~~~~~l~~~-~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~--~G~W 559 (1046)
T 4f1n_A 484 PTEKFDLISRLSMPAIKRGLTDS-EKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEES--KGNW 559 (1046)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCC-C---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGG--TTBC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCC--CCCC
T ss_conf 49999999999887541024666-557678628-7568503677887489757616875455556543445766--7852
Q ss_pred CCCCCCCCCCCC-CCEEEEEEECCCC-----CCCCCHHHHHHHHHHHHHHCCCCCCCC--CCCCCCC----CCCCC----
Q ss_conf 212234225531-2113999948996-----665508899999999998709202578--4214643----33323----
Q 001684 594 NFLESHVFEGTR-IERWALLSFGGSH-----DQKSAIPKFICQLSQRCEQLGIFLNKS--TIISPQF----EQTHV---- 657 (1030)
Q Consensus 594 nl~~~kf~~~~~-i~~W~ii~~~~~~-----~~~~~~~~f~~~L~~~~~~~Gi~i~~~--~~~~~~~----~~~~~---- 657 (1030)
||++++|+.++. +..|.++++.+.. ....++..|+..|.+.|+.+||.+..+ |.+...+ ..+..
T Consensus 560 nm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~ 639 (1046)
T 4f1n_A 560 NMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRG 639 (1046)
T ss_dssp CCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC--------
T ss_pred CCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68888771378666407999972787666542389999999999999986698547877874121345543111233433
Q ss_pred ---------------------CCCHHHHHHHHHHHHHHHCCCCCEEEEEEECC-CCC-HHHHHHHHHHCCCEEEEEEEEC
Q ss_conf ---------------------57813799999999998339973999998069-921-8999998752147023767403
Q 001684 658 ---------------------LNNVSLLESKLKKIHEAASNNLQLLICVMERK-HKG-YADLKRIAETSVGVVSQCCLYS 714 (1030)
Q Consensus 658 ---------------------~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~-~~~-Y~~IK~~~~~~~GV~TQci~~~ 714 (1030)
....+..|..+..+.+.+ ..++|||||||++ +.. |+.||++||+++||+||||..+
T Consensus 640 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~ 718 (1046)
T 4f1n_A 640 GRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWD 718 (1046)
T ss_dssp --------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEHH
T ss_conf 323333333333333444432111231799999999745-8997899996688871689999997613578144898423
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC--CCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 3357516789999999985129801330688988999766--79999399999831899999999818999984058776
Q 001684 715 NLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLF--FPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAA 792 (1030)
Q Consensus 715 t~~k~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~ip~~~--~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~ 792 (1030)
++.|.+.||++||+||||+||||+||.|++. .++.+. ....+|||||+||+|++++. .+||+|||||+|+ .+
T Consensus 719 t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d~-~~ 792 (1046)
T 4f1n_A 719 NFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYDD-KF 792 (1046)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCSS-SC
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCEEEECCCC---CCCCCCCCCCCCCEEEEEEEEECCCCCC--CCEEEEEEEEECC-CC
T ss_conf 5135427899999999998609851143665---4432344456773499853111179899--8726699999879-85
Q ss_pred CEEEEEEEEECC-CEEEEECHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC------
Q ss_conf 502389999137-6110002765899999999998-09999579998289892579999999999999998517------
Q 001684 793 NKYASRMRSQTH-RQEIIQDLGVMVGELLDDFYHE-LNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRF------ 864 (1030)
Q Consensus 793 ~ky~s~~~~Q~~-~~E~i~~l~~~~~~~L~~f~~~-~g~~P~~IIiYRDGVSEgqf~~Vl~~Ei~~Ik~a~~~~------ 864 (1030)
++|.+.+++|.. ++|+|++|++|+.++|+.|++. ++.+|++|||||||||||||.+|+++|+++|++||.++
T Consensus 793 t~y~s~~~~Q~~~~~Eii~~L~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~~~~ 872 (1046)
T 4f1n_A 793 TQFPGDYMLQDGPGEEIITNVGSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNG 872 (1046)
T ss_dssp CCCCEEEEEEEEETCCSCTTGGGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHHHHT
T ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 85835999845887248988999999999999986379998579998068765778999999999999999985430034
Q ss_pred -CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC----CCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEE
Q ss_conf -99999899999963355544437999998778----8998999980100442236986408984307865544551699
Q 001684 865 -PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHN----QSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYH 939 (1030)
Q Consensus 865 -~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~----~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~ 939 (1030)
.+|+|+||||||+||||+|||+.+.++.+..+ ..+.+|++||||||++||+|.+|||||+||.++|||+|||||+
T Consensus 873 ~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~ 952 (1046)
T 4f1n_A 873 GNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYW 952 (1046)
T ss_dssp SCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCSSSCCCEEEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf 55779877999996576423511455543333443234566799997286466456674128997033477766573799
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC-CC-CCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 970799889889999999975213666898223430033999998600001347-76-3245-88764336899999998
Q 001684 940 ILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERS-ES-ATLM-GSSSAICRAAPPKAAPL 1016 (1030)
Q Consensus 940 Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~~-~~-~~~~-~~~~~~~~~~~~~~~~l 1016 (1030)
||+||+++++|+||+|||+|||+|+|||++||||||+||||++|+|||.|+... +. .+.. +++.+..+.+..+.++|
T Consensus 953 VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1046)
T 4f1n_A 953 CLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKGSKDQPTVSKNVLL 1032 (1046)
T ss_dssp EEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC----------CCCHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99679999989999999998655335178862557899999999999999986412022224556677665556766545
Q ss_pred CCCCCCCCCCEEEC
Q ss_conf 54440134780419
Q 001684 1017 PKLSENVKKLMFYC 1030 (1030)
Q Consensus 1017 ~~~~~~~~~~M~y~ 1030 (1030)
+.||++++++||||
T Consensus 1033 ~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1033 PQVNDNIKSVMYYI 1046 (1046)
T ss_dssp CCCCGGGTTSCTTC
T ss_pred CHHHHHHCCCEEEC
T ss_conf 11335540152359
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=834.10 Aligned_cols=657 Identities=15% Similarity=0.140 Sum_probs=495.8
Q ss_pred EEEEEEEEECCCCCEEEEEE-EECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCEEEEEEECCC
Q ss_conf 92578976289981799999-98769997899999999999853003898405508710220333579844899990268
Q 001684 181 LANHFLVQLDPSQRIFHYNV-EMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIP 259 (1030)
Q Consensus 181 ~tN~F~i~~~~~~~iy~YdV-~i~p~~~k~~~R~i~~~l~~~~~~~f~~~~~vyDG~k~LyS~~~L~~~~~~~~V~l~~~ 259 (1030)
..|.|++...|..+-| .| .-..+..|+...+++++++-+ ...+.|-...-.|+.++...+.+- ....
T Consensus 6 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-- 73 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTF--TVFKPTHEIQKEKLNKVRWRVFLQ------TGLPTFRREDEFWCAGKVEKDTLY--LTLS-- 73 (706)
T ss_dssp EESEEEEEECCSSCEE--BCCEESSCCCHHHHHHHHHHHHHH------HCSCEEEETTEEEESSCCTTCCCE--EEEC--
T ss_pred HHHHHEEEECCCCCEE--EEECCHHHHHHHHHHHEEEEEEEE------CCCCCCCCCCCCEECCCCCCCEEE--EECC--
T ss_conf 5354425513677336--763450788787641201476510------178652015310343520132489--9817--
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88787899822343201257838999999622204577878620389999999445799999997069988852324554
Q 001684 260 TSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSL 339 (1030)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~f~V~Ik~~~~i~~~~L~~~l~~~~~d~~~~~~~~iq~Lniilr~~~~~~~~~vGrsf 339 (1030)
.+. .|+|++++.++.. + .+...+++|+++.+|+.. .+.+..+||+|
T Consensus 74 -------------------~~~--~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~-~l~~~~igr~~ 119 (706)
T 1yvu_A 74 -------------------NGE--IVELKRVGEEEFR-------G-----FQNERECQELFRDFLTKT-KVKDKFISDFY 119 (706)
T ss_dssp -------------------SSS--CEEEEECCCEECC-------C-----CSCHHHHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred -------------------CCC--EEEEEEEEEEECC-------C-----CCCCHHHHHHHHHHHHHC-CCHHHHHCCCC
T ss_conf -------------------997--8999999886156-------7-----899989999999999975-77475517244
Q ss_pred CCCCCCCCCCC---CCCEEEEECEEEEEEEEC-CCEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 58999995215---994899962057673204-61244210640014214776999999975555433220389991359
Q 001684 340 YSSSMGGAKEI---GGGAVGLRGFFQSLRPTQ-QGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQK 415 (1030)
Q Consensus 340 F~~~~~~~~~l---g~Gle~~~Gf~~SvR~~~-~~l~LniDvs~~~F~~~~~l~d~l~~~l~~~~~~~~~~~r~l~~~~~ 415 (1030)
|++.. +..+ ..++|+|+||.+||+..+ ++++||+|++|++ .+..+|+|+|.+ .... .
T Consensus 120 ~~~~~--~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshKv-lr~~Tvld~l~~-~~~~-------~-------- 180 (706)
T 1yvu_A 120 KKFRD--KITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFRI-QPFETLQTLLER-NDFN-------P-------- 180 (706)
T ss_dssp HHHHH--HHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEEE-EESSCHHHHHHH-CCCC-------C--------
T ss_pred CCCCC--CCCCCCCCCCEEECCCEEEEEEECCCCCEEEEEEEEEEE-CCCCHHHHHHHH-HHHC-------C--------
T ss_conf 58335--620567787679816868898852678759999734045-566539999997-2304-------6--------
Q ss_pred HHHHHHCCEEEEEEEEECCCEEE--EEEEC-CCCCCCCCEEECCCCCCEEHHHHHHHHCCCC--------CCCCCCCEEE
Q ss_conf 99997603059999641540059--99403-4478766155359997001999999652963--------3469996498
Q 001684 416 KEVERALKNIRVFVCHRETVQRY--RVYGL-TEEVTENLWFADRDGKNIRLLSYFKDHYNYN--------IQFRNLPCLQ 484 (1030)
Q Consensus 416 ~kl~k~LkGl~V~~~h~~~~~~~--~I~gi-s~~~a~~~~F~~~dG~~iSVaeYFk~~Yni~--------L~~p~lPlv~ 484 (1030)
+ .+..++ +++.| +|++| +++..+..+|. +|..+| ||+++|++. .+.+.+|++.
T Consensus 181 -------~--~~~~~y--~n~ty~~riddi~~~~~~P~~~f~--~g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v 244 (706)
T 1yvu_A 181 -------K--RIRVKP--IGIDFVGRVQDVFKAKEKGEEFFR--LCMERS---THKSSKKAWEELLKNRELREKAFLVVL 244 (706)
T ss_dssp -------T--TCEEEE--TTCCCCEEEEEEEESTTSCHHHHH--HHHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEE
T ss_pred -------H--HHHHHC--CCCEECCCCCCCCCCCCCCCEEEC--CCCCCC---EEECCCCCCHHHHHCCCCCCCCCEEEE
T ss_conf -------5--688643--255633365740046889513842--899755---585146754144430244567724884
Q ss_pred ECCCC--CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEE
Q ss_conf 16898--6212332310025864359999799999987216999999999998542999999887664003497045117
Q 001684 485 ISRSK--PCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTR 562 (1030)
Q Consensus 485 vg~~k--~~ylP~Elc~I~~~Qr~~~kLs~~q~s~mik~a~~~P~eR~~~I~~~~~~~~~~~~~~~l~~fGi~I~~~~~~ 562 (1030)
.+++. +.++++ +|.+ ++|+++|+++|+++++++|++|++.|.++++. .++.|+.|||+|+++|+.
T Consensus 245 ~~~~~~p~~lL~p-lc~~-------t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~-----~~~~L~~fGi~i~~~~~~ 311 (706)
T 1yvu_A 245 EKGYTYPATILKP-VLTY-------ENLEDEERNEVADIVRMEPGKRLNLIRYILRR-----YVKALRDYGWYISPEEER 311 (706)
T ss_dssp TTSCEEEGGGEEE-CCCC-------C------HHHHTSTTSCCHHHHHHHHHHHHHH-----HHHHHHTTTEEECSSCEE
T ss_pred CCCCCCCCEEECC-CCCC-------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHHHHHCCCEECCCEEE
T ss_conf 2688778644300-1213-------79999999999999825999999999999999-----899999769888886422
Q ss_pred EEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE---EEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6549915994121899851003577677642212234225531211---3999948996665508899999999998709
Q 001684 563 LNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIER---WALLSFGGSHDQKSAIPKFICQLSQRCEQLG 639 (1030)
Q Consensus 563 V~aRvL~pP~I~yg~~~~~~~~~p~~~~G~Wnl~~~kf~~~~~i~~---W~ii~~~~~~~~~~~~~~f~~~L~~~~~~~G 639 (1030)
|+|||||+|+|.++.+.... ..+. ..|.|++. .+|+.++.++. |.+++ ... ...+..|++.|.+.|+.+|
T Consensus 312 v~gRVLp~P~i~~~~g~~~~-~~~~-~~~~~~~~-~~~~~~~~l~~~~lW~~i~-~~~---~~~~~~f~~~L~~~~~~~G 384 (706)
T 1yvu_A 312 AKGKLNFKDTVLDAKGKNTK-VITN-LRKFLELC-RPFVKKDVLSVEIISVSVY-KKL---EWRKEEFLKELINFLKNKG 384 (706)
T ss_dssp CCEECCCCCCEECSSCCEEC-CSSC-CHHHHHHC-CCCCSCSEEEEEEEEEEC---------CHHHHHHHHHHHHHHTTT
T ss_pred CCCEECCCCEEECCCCCCCE-ECCC-CCCCCCCC-CCEECCCCCCCCEEEEEEE-CCH---HHHHHHHHHHHHHHHHHCC
T ss_conf 13687389506647897430-2368-75430003-7411143256433899981-661---6899999999999998749
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEEEECC-------CCC-HHHHHHHHHHCCCEEEE
Q ss_conf 202578421464333323578137999999999983--39973999998069-------921-89999987521470237
Q 001684 640 IFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAA--SNNLQLLICVMERK-------HKG-YADLKRIAETSVGVVSQ 709 (1030)
Q Consensus 640 i~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~--~~~~~lvlvIlp~~-------~~~-Y~~IK~~~~~~~GV~TQ 709 (1030)
|.+..++.. .. ..+.++.+++.+.... ..+++++|||+|++ +.+ |+.||++| .+.||+||
T Consensus 385 ~~i~~p~~~-~~--------~~~~~~~~~~~l~~~~~~~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~-~~~GI~TQ 454 (706)
T 1yvu_A 385 IKLKIKGKS-LI--------LAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQ 454 (706)
T ss_dssp CEEEEEEEE-EE--------ECSSTTHHHHHHHHHHTTTSSCSEEEEEEC----------CHHHHHHHHHH-HHTTCCCE
T ss_pred CEECCCCCC-CC--------CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH-HCCCCCEE
T ss_conf 620687422-33--------400199999999987500589958999977744445556754799999998-52898549
Q ss_pred EEEECCCCCC-CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEC
Q ss_conf 6740333575-167899999999851298013306889889997667999939999983189999999981899998405
Q 001684 710 CCLYSNLGKL-SSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMN 788 (1030)
Q Consensus 710 ci~~~t~~k~-~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~ip~~~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d 788 (1030)
||..+++.+. ..|++.||++|||+||||+||.|+.. ...+|||||+||+||+.+. ..||++|+|+|+|
T Consensus 455 cv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~~----------~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d 523 (706)
T 1yvu_A 455 VILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI----------EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN 523 (706)
T ss_dssp EEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC----------TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC
T ss_pred EEEHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECCC----------CCCCEEEEEEEEECCCCCC-CCCEEEEEEEEEC
T ss_conf 9801021665307899999999999849861560258----------8885599999886168788-8856999999985
Q ss_pred CC-CCCEEEEEEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87-76502389999137611000276589999999999809999579998289892579999999999999998517999
Q 001684 789 WP-AANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGY 867 (1030)
Q Consensus 789 ~~-~~~ky~s~~~~Q~~~~E~i~~l~~~~~~~L~~f~~~~g~~P~~IIiYRDGVSEgqf~~Vl~~Ei~~Ik~a~~~~~~~ 867 (1030)
.. .+.+|.+....| .++|++++ ++..+|+.|.+.++.+|+||||||||||| ++|+++|++||.+ |
T Consensus 524 ~~g~~~~~~~~~~~q-~~~ei~~~---l~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~---~ 589 (706)
T 1yvu_A 524 SKGELVRYYLTSYPA-FGEKLTEK---AIGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL---Y 589 (706)
T ss_dssp TTSCEEEEEEEEECS-CTTHHHHH---HHHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH---H
T ss_pred CCCCEEEEEEEECCC-CCCHHHHH---HHHHHHHHHHHHCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHH---C
T ss_conf 899889999873366-64269999---99999999998649998379999688885-------8999999999997---2
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCC-CCCCCCCEEEEEEECCCC
Q ss_conf 9989999996335554443799999877889989999801004422369864089843078-655445516999707998
Q 001684 868 SPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWG-VKGTSRPTHYHILWDDNK 946 (1030)
Q Consensus 868 ~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~-~qGTarPt~Y~Vl~de~~ 946 (1030)
.|+||||+|+||||+|||+. +||+||||||. ..+||||++|.+ +|||+||+||+|+++|.
T Consensus 590 ~pkit~IvV~Krh~tRfF~~-------------~np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~- 650 (706)
T 1yvu_A 590 GYSLELLEIIKRNNPRFFSN-------------EKFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL- 650 (706)
T ss_dssp TCEEEEEEEECSSCCCEECS-------------CSCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS-
T ss_pred CCCEEEEEEEECCCEEEECC-------------CCCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEEEEECCC-
T ss_conf 99479999970467158788-------------99997389972-----797699994477667887887999991899-
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 89889999999975213666898223430033999998600001347
Q 001684 947 FTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERS 993 (1030)
Q Consensus 947 ~~~d~Lq~lTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~~ 993 (1030)
++|+||++||+|||+|+||+++||+|||+||||++|+|++.++.++
T Consensus 651 -~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~p~ 696 (706)
T 1yvu_A 651 -PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI 696 (706)
T ss_dssp -CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCC
T ss_pred -CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf -9999999999989860164899604758999999999997427811
No 4
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=807.15 Aligned_cols=414 Identities=29% Similarity=0.485 Sum_probs=348.2
Q ss_pred CCCCCCCC-CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12234225-53121139999489966655088999999999987092025784214643333235781379999999999
Q 001684 595 FLESHVFE-GTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHE 673 (1030)
Q Consensus 595 l~~~kf~~-~~~i~~W~ii~~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~ 673 (1030)
|++++|+. ++++++|+++++.+. .+...+..|++.|.+.|+.+||.+..+......... ......+ .++.+..
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~-~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~---~~~~~~~--~~~~~~~ 75 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGS-KANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSV---PGSEKEF--FAKVKEL 75 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECS-SCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEEC---CSSHHHH--HHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEECCC---CCHHHHH--HHHHHHC
T ss_conf 988886269972777999991277-787999999999999998769771799876410377---8658887--9987504
Q ss_pred HHCCCCCEEEEEEECCCCC-HHHHHHHHHHCCCEEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 8339973999998069921-899999875214702376740333575167--8999999998512980133068898899
Q 001684 674 AASNNLQLLICVMERKHKG-YADLKRIAETSVGVVSQCCLYSNLGKLSSQ--FLANLALKINAKVGGCTVALYNSLPSQI 750 (1030)
Q Consensus 674 ~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~GV~TQci~~~t~~k~~~q--~~~Ni~lKiNaKLGG~n~~l~~~~~~~i 750 (1030)
. .+++|||||+|+++.+ |+.||++||++.||+||||..+++.|.+.| +++||+||||+||||+||.|+.. +
T Consensus 76 ~--~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~ 149 (437)
T 2yhb_A 76 M--SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----I 149 (437)
T ss_dssp H--HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----C
T ss_pred C--CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----C
T ss_conf 5--898389999788983489999998701568541897266724766289999999999999849924023666----4
Q ss_pred CCCCCCCCCEEEEEEEECCCC---CC--CCCCCEEEEEEEEECCCCCCEEEEEEEEEC-CCEEEEECHHHHHHHHHHHHH
Q ss_conf 976679999399999831899---99--999981899998405877650238999913-761100027658999999999
Q 001684 751 PRLFFPDEPVIFMGADVTHPH---PL--DDFSPSVAAVVGSMNWPAANKYASRMRSQT-HRQEIIQDLGVMVGELLDDFY 824 (1030)
Q Consensus 751 p~~~~~~~~tmiiG~DVsHp~---~~--~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~-~~~E~i~~l~~~~~~~L~~f~ 824 (1030)
| ++...+|||||+||+||+ +| ....|||+|+|||+|. ..++|.+.+++|. +++|+|++|++|+.++|+.|+
T Consensus 150 ~--~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~~~ 226 (437)
T 2yhb_A 150 P--LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQFTDKFKTRLELWR 226 (437)
T ss_dssp H--HHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 5--45778779998887525655677767899979999873499-96744027898677644489999999999999998
Q ss_pred H---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC-CCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9---809999579998289892579999999999999998517-999-99899999963355544437999998778899
Q 001684 825 H---ELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRF-PGY-SPPITFVVVQKRHHTRLFPYDNDPSSAHNQSS 899 (1030)
Q Consensus 825 ~---~~g~~P~~IIiYRDGVSEgqf~~Vl~~Ei~~Ik~a~~~~-~~~-~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~ 899 (1030)
+ +++.+|++|||||||||||||.+|+++|+++|++||.++ +++ +|+||||||+||||+|||+.+..+. .+ +
T Consensus 227 ~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~--~~--~ 302 (437)
T 2yhb_A 227 SNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI--HF--K 302 (437)
T ss_dssp TCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC----------------------
T ss_pred HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCCCCCC--CC--C
T ss_conf 6554337998638999177566779999999999999999985043679877999997145532546775433--44--6
Q ss_pred CCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCC------CCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8999980100442236986408984307865544551699970799------8898899999999752136668982234
Q 001684 900 DENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDN------KFTSDELQKLVYNLCYTFVRCTKPVSLV 973 (1030)
Q Consensus 900 ~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~------~~~~d~Lq~lTy~LC~~y~r~t~sVslP 973 (1030)
.+|++||||||++||+|.+|||||+||.++|||+|||||+||+||+ ++++|+||+|||+|||+|+|||++||+|
T Consensus 303 ~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsip 382 (437)
T 2yhb_A 303 SKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSIC 382 (437)
T ss_dssp -------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC----------C
T ss_pred CCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 68999855715644677773289973312104687638999937854323579998999999999877520315887748
Q ss_pred CCCHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 30033999998600001347-7632458876433689999999854440134780419
Q 001684 974 PPAYYAHLAAYRGRLYLERS-ESATLMGSSSAICRAAPPKAAPLPKLSENVKKLMFYC 1030 (1030)
Q Consensus 974 aP~yYA~~~a~R~r~yl~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~M~y~ 1030 (1030)
||+||||++|+|||.|+... +.+.++++.+ +++. .....++++|++++++||||
T Consensus 383 aP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 383 PPAYYADLVCDRARIHQKELFDALDENDSVK--TDDF-ARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTSCCC--HHHH-HHHHHHTSCCGGGTTSCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCC-CCCCCCCCCCHHHCCCCEEC
T ss_conf 7899999999999987454115777777667--7774-32223466597663783569
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=749.80 Aligned_cols=665 Identities=14% Similarity=0.100 Sum_probs=485.8
Q ss_pred CEEEEEEEEEEEEE--CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCE--EEECCCCCCCCEE
Q ss_conf 46999925789762--8998179999998769997899999999999853003898405508710--2203335798448
Q 001684 176 AVISLLANHFLVQL--DPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKN--IYSPVEFENDRLE 251 (1030)
Q Consensus 176 ~~I~l~tN~F~i~~--~~~~~iy~YdV~i~p~~~k~~~R~i~~~l~~~~~~~f~~~~~vyDG~k~--LyS~~~L~~~~~~ 251 (1030)
-+..|.+|||++.. .|+ .+|+|+|++.|+... + ++..++..+.+.+| ..+|||. . ||++.+|+-
T Consensus 2 ~~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~---~-~~~~~~~~~~~~~g--~~~fdg~-~~~l~~~~~l~~---- 69 (771)
T 1u04_A 2 MKAIVVINLVKINKKIIPD-KIYVYRLFNDPEEEL---Q-KEGYSIYRLAYENV--GIVIDPE-NLIIATTKELEY---- 69 (771)
T ss_dssp CEEEEEBSEEEBCGGGSCS-CEEEEEC----------------CCHHHHHHHTT--EEEEETT-TTEEEESSCCCC----
T ss_pred CCEEEEEEEEEEECCCCCC-EEEEEEEECCCHHHH---H-HHHHHHHHHHHHCC--CEEECCC-CEEEECCCEECC----
T ss_conf 5069994068873246887-059998623875888---9-99989998786537--1896475-203222532146----
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC-CC
Q ss_conf 99990268887878998223432012578389999996222045778786203899999994457999999970699-88
Q 001684 252 FFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENP-SE 330 (1030)
Q Consensus 252 ~~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~V~Ik~~~~i~~~~L~~~l~~~~~d~~~~~~~~iq~Lniilr~~~-~~ 330 (1030)
.+..++|+++.++.++ +|++|+++|... .+
T Consensus 70 ---------------------------~~~~~~~~~~~~~~~~----------------------~~~~n~i~r~~l~~~ 100 (771)
T 1u04_A 70 ---------------------------EGEFIPEGEISFSELR----------------------NDYQSKLVLRLLKEN 100 (771)
T ss_dssp ---------------------------SSCCEEEEEECGGGSC----------------------HHHHHHHHHHHHHHT
T ss_pred ---------------------------CCCEEEEEEEECCEEC----------------------HHHHHHHHHHHHHHC
T ss_conf ---------------------------8973789999904402----------------------999999999999874
Q ss_pred C-----CCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEEEECCCEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8-----52324554589999952159948999620576732046124421064001421477699999997555543322
Q 001684 331 K-----CIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQR 405 (1030)
Q Consensus 331 ~-----~~~vGrsfF~~~~~~~~~lg~Gle~~~Gf~~SvR~~~~~l~LniDvs~~~F~~~~~l~d~l~~~l~~~~~~~~~ 405 (1030)
+ ...+||+||++. .+ +.+++|+|+.+|||..+++++|++|++|+++. ..+|+|++.+..+
T Consensus 101 ~~~~~~l~~~~r~~~~~~-----~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r-~~t~~d~~~~~~~-------- 165 (771)
T 1u04_A 101 GIGEYELSKLLRKFRKPK-----TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKDPK-------- 165 (771)
T ss_dssp TCSHHHHHHHHTTTSCCE-----EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTCHH--------
T ss_pred CCCHHHHHHHHHHCCCCC-----CC-CCCEEEECCEEEEEECCCCEEEEEEEEEEEEE-HHHHHHHHHHHHH--------
T ss_conf 620588999766207983-----34-66279987346688537843899986656755-5679999999999--------
Q ss_pred HCCCCCHHHHHHHHHHCCEEEEEEE--------EECCCEEEEEEECCCCCCCCC--EE---ECCCC-CCEEHHHHHHHHC
Q ss_conf 0389991359999976030599996--------415400599940344787661--55---35999-7001999999652
Q 001684 406 KTRGLSGDQKKEVERALKNIRVFVC--------HRETVQRYRVYGLTEEVTENL--WF---ADRDG-KNIRLLSYFKDHY 471 (1030)
Q Consensus 406 ~~r~l~~~~~~kl~k~LkGl~V~~~--------h~~~~~~~~I~gis~~~a~~~--~F---~~~dG-~~iSVaeYFk~~Y 471 (1030)
..++......|.-|.+. |+.++++|+++. .++..+.. +| ..++| ..+++.+||.++|
T Consensus 166 --------~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y 236 (771)
T 1u04_A 166 --------ELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKF 236 (771)
T ss_dssp --------HHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred --------HHHHHHHHCCCCEEEEECCCCCEEEEECCCCEEECCC-CCCCCCCCHHHEECEEECCCCCCCCHHHHHHHHC
T ss_conf --------9998887356737853113444268604662441588-5123789854401302137788741168788764
Q ss_pred CCCCCCCCCCEEEEC-C-------CCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC---
Q ss_conf 963346999649816-8-------98621233231002586435999979999998721699999999999854299---
Q 001684 472 NYNIQFRNLPCLQIS-R-------SKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGP--- 540 (1030)
Q Consensus 472 ni~L~~p~lPlv~vg-~-------~k~~ylP~Elc~I~~~Qr~~~kLs~~q~s~mik~a~~~P~eR~~~I~~~~~~~--- 540 (1030)
++ ++++||++... + ++.++|.||||.+++ ...+.+...+.+|...+...|.+|.+.+.++.+++
T Consensus 237 ~i--~d~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~ 311 (771)
T 1u04_A 237 GQ--VDLKQPAILAKFASKIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSD 311 (771)
T ss_dssp CS--CCTTSCEEEEEESCC-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCS
T ss_pred CC--CCCCCCEEEECCHHHCCCCCCCEEEECHHHHHHCC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 86--76788769851443246788960364247653367---43566689999999987779899999999999986154
Q ss_pred --CCC-CCCCCCCCCCEEEECCCEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC----CCE---
Q ss_conf --999-98876640034970451176549915994121899851003577677642--212234225531----211---
Q 001684 541 --VGP-TSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQW--NFLESHVFEGTR----IER--- 608 (1030)
Q Consensus 541 --~~~-~~~~~l~~fGi~I~~~~~~V~aRvL~pP~I~yg~~~~~~~~~p~~~~G~W--nl~~~kf~~~~~----i~~--- 608 (1030)
... .....|+.|+ .++.. +.|.++++.+-.+..++- ..+. .++| .+++.+++.+.. +++
T Consensus 312 ~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~~-----~~~~--~adW~~~~~~~~~~~~~~~p~~l~~~~~ 382 (771)
T 1u04_A 312 IIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLNV-----QKSQ--LLLWTNYSRKYPVILPYEVPEKFRKIRE 382 (771)
T ss_dssp SBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC---------------CGGGGSCCCCCCCCSBCCTHHHHCCC
T ss_pred HHCCCHHHHHHHHHHH-CCCCC-CCCCCCCCCCCCEEECCC-----CCCC--CCCCCHHHCCCCCEECCCCHHHHHCCCC
T ss_conf 4307988999975554-11767-500254566453263276-----7776--6776055377851104654265504355
Q ss_pred ---EEEEEECCCCCCCCCHHHHH---------HHHHHHHHHCC-----------CCCCCCCC--CCCCCCCCCCCCCHHH
Q ss_conf ---39999489966655088999---------99999998709-----------20257842--1464333323578137
Q 001684 609 ---WALLSFGGSHDQKSAIPKFI---------CQLSQRCEQLG-----------IFLNKSTI--ISPQFEQTHVLNNVSL 663 (1030)
Q Consensus 609 ---W~ii~~~~~~~~~~~~~~f~---------~~L~~~~~~~G-----------i~i~~~~~--~~~~~~~~~~~~~~~~ 663 (1030)
|.+++ .+ ....+.+|+ +.|.+.+..+| +.++.+.. .+..... .+++.+.
T Consensus 383 i~~wil~~-~~---~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~--dl~~~~~ 456 (771)
T 1u04_A 383 IPMFIILD-SG---LLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITE--DLNSDKG 456 (771)
T ss_dssp CCEEEEEE-TT---SCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEE--CTTSHHH
T ss_pred CCEEEEEE-CC---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECC--CCCCHHH
T ss_conf 53599995-77---168899888887666778999987532231011035664225787333467514315--6553477
Q ss_pred HHHHHHHHHHHHC-CCCCEEEEEEE-CCCCC-HHHHHHHHHHCCCEEEEEEEECCCCCC----C-----HHHHHHHHHHH
Q ss_conf 9999999999833-99739999980-69921-899999875214702376740333575----1-----67899999999
Q 001684 664 LESKLKKIHEAAS-NNLQLLICVME-RKHKG-YADLKRIAETSVGVVSQCCLYSNLGKL----S-----SQFLANLALKI 731 (1030)
Q Consensus 664 le~~l~~i~~~~~-~~~~lvlvIlp-~~~~~-Y~~IK~~~~~~~GV~TQci~~~t~~k~----~-----~q~~~Ni~lKi 731 (1030)
++.+++.+..... ..+++++++++ .++.+ |+.||++| ++.||+||||..+|+.+. + .+++.||++||
T Consensus 457 i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqI 535 (771)
T 1u04_A 457 IIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQV 535 (771)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999997515789878999975898866689999998-548966399843500676544332313289999999999
Q ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCEEEEEC
Q ss_conf 85129801330688988999766799993999998318999999998189999840587765023899991376110002
Q 001684 732 NAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQD 811 (1030)
Q Consensus 732 NaKLGG~n~~l~~~~~~~ip~~~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~E~i~~ 811 (1030)
|+||||+||.|+. | ..++||||+||+|++++. ..++++|+|+|.|+ ...+|.+....|.+++ .++
T Consensus 536 n~KLGG~pW~L~~------p-----~~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~E-~i~- 600 (771)
T 1u04_A 536 LSKLGVKYYVLDY------R-----FNYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRGE-SVD- 600 (771)
T ss_dssp HHHTTCBCCEESC------C-----CSSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSSS-SCC-
T ss_pred HHHHCCCCEEECC------C-----CCCEEEEEEEEECCCCCC-CCEEEEEEEECCCC-CEEEEEEEEEECCCCC-EEC-
T ss_conf 9985983326068------9-----998799999987479899-74699999977999-7899988873037763-773-
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 765899999999998-0999957999828989257999999999999999851799999899999963355544437999
Q 001684 812 LGVMVGELLDDFYHE-LNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDND 890 (1030)
Q Consensus 812 l~~~~~~~L~~f~~~-~g~~P~~IIiYRDGVSEgqf~~Vl~~Ei~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~ 890 (1030)
+..|+.++|..|++. ++.+|+||||||||+ |+++|+++|++||.+ +.|+|+||+|+||||+|||. +
T Consensus 601 l~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~---~~p~itfIvV~Krh~tRfF~-~-- 667 (771)
T 1u04_A 601 MNEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEM---FDIEVVTMDVIKNHPVRAFA-N-- 667 (771)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHH---HTCEEEEEEEESCCCCCBSS-C--
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCC-------CCHHHHHHHHHHHHH---CCCCEEEEEEEECCCEEEEC-C--
T ss_conf 9999999999999970799997799991888-------878999999999985---59988999999457515646-9--
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECC--CCCCCCCCEEE--EEEECCCCCC----HHHHHHHHHHHHHC
Q ss_conf 9987788998999980100442236986408984307--86554455169--9970799889----88999999997521
Q 001684 891 PSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHW--GVKGTSRPTHY--HILWDDNKFT----SDELQKLVYNLCYT 962 (1030)
Q Consensus 891 ~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~--~~qGTarPt~Y--~Vl~de~~~~----~d~Lq~lTy~LC~~ 962 (1030)
.+|||||| . ||||+||. +.|||++|+|| +|++|+++++ +|+||++||+|||+
T Consensus 668 ------------~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchl 727 (771)
T 1u04_A 668 ------------MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRL 727 (771)
T ss_dssp ------------SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTC
T ss_pred ------------CCCEEEEE-------C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf ------------99804996-------8-889983454588888887899978875278878777899999999986550
Q ss_pred CCCCCC-CCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 366689-82234300339999986000013477
Q 001684 963 FVRCTK-PVSLVPPAYYAHLAAYRGRLYLERSE 994 (1030)
Q Consensus 963 y~r~t~-sVslPaP~yYA~~~a~R~r~yl~~~~ 994 (1030)
|+||++ +||+|||+||||++|++.+.++..++
T Consensus 728 yyn~~~~svrvPAP~~YAhklA~lvgq~~~~~~ 760 (771)
T 1u04_A 728 NYGSISADMRLPAPVHYAHKFANAIRNEWKIKE 760 (771)
T ss_dssp CTTCSSCCCCSCHHHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 145799996478127999999999976624576
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=677.92 Aligned_cols=639 Identities=19% Similarity=0.174 Sum_probs=462.8
Q ss_pred CEEEEEEEEEEEEEC--CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCC-CEEE
Q ss_conf 469999257897628--9981799999987699978999999999998530038984055087102203335798-4489
Q 001684 176 AVISLLANHFLVQLD--PSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFEND-RLEF 252 (1030)
Q Consensus 176 ~~I~l~tN~F~i~~~--~~~~iy~YdV~i~p~~~k~~~R~i~~~l~~~~~~~f~~~~~vyDG~k~LyS~~~L~~~-~~~~ 252 (1030)
.++.|+-|-|.++-. ++.+.|.|++.+.|.+.++.--.+...+-+ .+|+ ..|-=| +.|.|..+ |.. .+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~-~~~~~~~~-~~~~~~~~ 77 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVAR----RAGG-VTVRMG-DGLASWSP-PEVLVLEG 77 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHHHHHHHHH----HTCS-SEEEET-TEEEESSC-TTTSCCEE
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHH----HHCC-EEEEEC-CCEECCCC-CHHHHCCC
T ss_conf 52058975003454885348505899850799884147789999998----7387-478632-74000467-05541022
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEECHHHHHHHHCCCCCCCCCCCHHHH-----HHHHHHHCCC
Q ss_conf 99902688878789982234320125783899999962220457787862038999999944579-----9999997069
Q 001684 253 FVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYL-----HALDVVLREN 327 (1030)
Q Consensus 253 ~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~V~Ik~~~~i~~~~L~~~l~~~~~d~~~~~~~~i-----q~Lniilr~~ 327 (1030)
.|. +.++...|.+.-.=...+|..+- ...+++ ..|+-.|+..
T Consensus 78 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 124 (685)
T 3ho1_A 78 TLA--------------------RMGQTYAYRLYPKGRRPLDPKDP-------------GERSVLSALARRLLQERLRRL 124 (685)
T ss_dssp EEE--------------------CSSCEEEEEEEEEEECCCCTTSH-------------HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHC--------------------CCCCCCCEEEEECCCCCCCCCCH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 000--------------------23688663653056645788986-------------788999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEEEEC-CCEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98885232455458999995215994899962057673204-61244210640014214776999999975555433220
Q 001684 328 PSEKCIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQ-QGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRK 406 (1030)
Q Consensus 328 ~~~~~~~vGrsfF~~~~~~~~~lg~Gle~~~Gf~~SvR~~~-~~l~LniDvs~~~F~~~~~l~d~l~~~l~~~~~~~~~~ 406 (1030)
.+...-|.-.+... ..-|.|.|+++|+-..|-++. +++.|.||..+..+ .+.++.+|+++...
T Consensus 125 --~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~~-~~~~~~~~l~~~~~--------- 188 (685)
T 3ho1_A 125 --EGVWVEGLAVYRRE----HARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRIL-CEMSLEAWLAQGHP--------- 188 (685)
T ss_dssp --SSSEEETTEEEEEE----EEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEE-ECSCHHHHHHHSCC---------
T ss_pred --HCEEECCEEEEEEC----CCCCCCEEEECCEEEEEEECCCCCEEEEEEEHEEEC-CHHHHHHHHHHCCC---------
T ss_conf --33377647898406----887774388436699999877886799974030114-76449999981798---------
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEEEEECCCEEEEEEECCCCCCCCCEEECCCCCCEEHHHHHHHHCCCCCCCCCCCEEEEC
Q ss_conf 38999135999997603059999641540059994034478766155359997001999999652963346999649816
Q 001684 407 TRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQIS 486 (1030)
Q Consensus 407 ~r~l~~~~~~kl~k~LkGl~V~~~h~~~~~~~~I~gis~~~a~~~~F~~~dG~~iSVaeYFk~~Yni~L~~p~lPlv~vg 486 (1030)
|. ..|..+| +.++|.|.+|+ +.+++..|-.. .+|++||++++|.+ +.-++|+|...
T Consensus 189 ---------------~~-~~v~~~y--~~~~~~~~~~~-~~~p~~~~l~~---~~s~~~y~~~k~~~--~~~~~~~vv~~ 244 (685)
T 3ho1_A 189 ---------------LP-KRVRNAY--DRRTWELLRLG-EEDPKELPLPG---GLSLLDYHASKGRL--QGREGGRVAWV 244 (685)
T ss_dssp ---------------CC-SEEEESS--SCCEECCCEEE-CCCTTCC---------CSTTTTTTTSTT--TTSCCCSEEEE
T ss_pred ---------------CC-HHHHHHC--CCCEEEEEECC-CCCCHHEECCC---CCCHHHHHHHCCCC--CCCCCCEEEEE
T ss_conf ---------------32-7776431--66248986336-68933234578---86599997542653--34678659999
Q ss_pred -C----CC-----CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf -8----98-----6212332310025864359999799999987216999999999998542999999887664003497
Q 001684 487 -R----SK-----PCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHV 556 (1030)
Q Consensus 487 -~----~k-----~~ylP~Elc~I~~~Qr~~~kLs~~q~s~mik~a~~~P~eR~~~I~~~~~~~~~~~~~~~l~~fGi~I 556 (1030)
+ .+ ..+|.|||| +. .|++.+.. .++.+.|.+|++.+.++.+. +++.|||+
T Consensus 245 ~~~~~~~~~i~~~~~~l~p~l~-m~-------~l~~~~~~---~~trlsP~~R~~~l~~~~~~--------i~~~~Gl~- 304 (685)
T 3ho1_A 245 ADPKDPRKPIPHLTGLLVPVLT-LE-------DLHEEEGS---LALSLPWEERRRRTREIASW--------IGRRLGLG- 304 (685)
T ss_dssp CSCC---CCEEEETTSEEEECC-TT-------TTSSCSSC---CCCCCCHHHHHHHHHHHHHH--------HHHTTCSC-
T ss_pred ECCCCCCCCCEEEEEEECHHHH-HH-------HHHHHHHH---CCCCCCHHHHHHHHHHHHHH--------HHHHCCCC-
T ss_conf 5544578733244256322767-87-------77666640---62567989999999999999--------88853999-
Q ss_pred ECCCEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 04511765499159941218998510035776776422122342255312113999948996665508899999999998
Q 001684 557 SREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCE 636 (1030)
Q Consensus 557 ~~~~~~V~aRvL~pP~I~yg~~~~~~~~~p~~~~G~Wnl~~~kf~~~~~i~~W~ii~~~~~~~~~~~~~~f~~~L~~~~~ 636 (1030)
+.+|++++||+||||+| +++. . + .+.|++.+.+|+.++.. .|+++++.+. ...+++|++.|.+.|+
T Consensus 305 ~~~~i~v~gRvLppp~I-~g~~-~---~-----~~~~d~~~~~~~~~~~~-~~ail~l~~~---~~~~~~f~~~L~~va~ 370 (685)
T 3ho1_A 305 TPEAVRAQAYRLSIPKL-MGRR-A---V-----SKPADALRVGFYRAQET-ALALLRLDGA---QGWPEFLRRALLRAFG 370 (685)
T ss_dssp CCEEEEEEEEECCCCCE-ESSS-B---C-----SSGGGHHHHCCSSCCCE-EEEEEECSSC---CSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHH-CCCC-C---C-----CCCHHHCCCCCEECCCC-EEEEEECCCC---HHHHHHHHHHHHHHHH
T ss_conf 89711687788388995-5899-7---5-----78621114753113673-5999962672---6789999999999887
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-HHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 70920257842146433332357813799999999998339973999998069921-89999987521470237674033
Q 001684 637 QLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKG-YADLKRIAETSVGVVSQCCLYSN 715 (1030)
Q Consensus 637 ~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~GV~TQci~~~t 715 (1030)
.+||.+..+... ...+ +...+...+++. ...++++||||+|+++.+ |+.||++| .+.||+||||. ++
T Consensus 371 ~~G~~i~~~~~~-~~~~------d~~~~~~~l~~~---~~~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~t 438 (685)
T 3ho1_A 371 ASGASLRLHTLH-AHPS------QGLAFREALRKA---KEEGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VP 438 (685)
T ss_dssp SSSSCEEEEECC-CCGG------GTHHHHHHHHHH---HHTTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SS
T ss_pred HCCCEECCCEEE-CCCC------CHHHHHHHHHHH---HHCCCCEEEEEECCCCCCHHHHHHHHH-HCCCCCCEEEE-CC
T ss_conf 679376355110-4777------369999999986---423998899997799954789999998-63997638996-12
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECC-CCCCE
Q ss_conf 35751678999999998512980133068898899976679999399999831899999999818999984058-77650
Q 001684 716 LGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNW-PAANK 794 (1030)
Q Consensus 716 ~~k~~~q~~~Ni~lKiNaKLGG~n~~l~~~~~~~ip~~~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~-~~~~k 794 (1030)
+.+...+++.||++|||+||||+||.|+. | ..++||||+||+|++. .++++++++++. ....+
T Consensus 439 l~k~~~~ia~NIaLkINaKLGG~pW~L~~------P-----~~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~ 502 (685)
T 3ho1_A 439 LREEERHRWENALLGLLAKAGLQVVALSG------A-----YPAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLL 502 (685)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTCCCCEECS------C-----CSCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHCCEEEEECC------C-----CCCEEEEEEEEECCCC-----CCCCEEEEEEECCCCEEE
T ss_conf 25640719999999998873983578568------9-----9986999999973898-----961239999978888777
Q ss_pred EEEEEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23899991376110002765899999999998099995799982898-92579999999999999998517999998999
Q 001684 795 YASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGV-SETQFYKVLQEELQSIREACSRFPGYSPPITF 873 (1030)
Q Consensus 795 y~s~~~~Q~~~~E~i~~l~~~~~~~L~~f~~~~g~~P~~IIiYRDGV-SEgqf~~Vl~~Ei~~Ik~a~~~~~~~~Pkit~ 873 (1030)
| +..+.|...++.+++|.+|+.++|..|++.+|.+|+||||||||| +|||+. +|++||.++ .+++||
T Consensus 503 ~-~~~~~Q~~e~l~~~~L~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~---~~~~t~ 570 (685)
T 3ho1_A 503 W-TLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALARE---GIAYDL 570 (685)
T ss_dssp E-ECCCCCCSCCCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT---TCEEEE
T ss_pred E-EEEECCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH--------HHHHHHHHC---CCCEEE
T ss_conf 6-7887267858649999999999999999983899848999958989989999--------999999861---998799
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEC--CCCCCCCCCEEEEEEECCCCCCHHH
Q ss_conf 99963355544437999998778899899998010044223698640898430--7865544551699970799889889
Q 001684 874 VVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSH--WGVKGTSRPTHYHILWDDNKFTSDE 951 (1030)
Q Consensus 874 Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh--~~~qGTarPt~Y~Vl~de~~~~~d~ 951 (1030)
|+|+||||+|||+.+ .++.+||+|+ ..+||||++| .+.|||+||+||+ +|++++++|+
T Consensus 571 IvVqKRh~tRfF~~n------------~pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~ 630 (685)
T 3ho1_A 571 VSVRKSGGGRVYPVQ------------GRLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEA 630 (685)
T ss_dssp EEEESSCCCCEEESS------------SCCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHH
T ss_pred EEEEECCCCEEECCC------------CCCCCEEEEE------CCCCEEEEEECCCCCCCCCCEEEEE--ECCCCCCHHH
T ss_conf 999916871374689------------8998759980------7897899996688876678619999--8989989999
Q ss_pred HHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHH-HHCCC
Q ss_conf 9999999752136668-9822343003399999-86000
Q 001684 952 LQKLVYNLCYTFVRCT-KPVSLVPPAYYAHLAA-YRGRL 988 (1030)
Q Consensus 952 Lq~lTy~LC~~y~r~t-~sVslPaP~yYA~~~a-~R~r~ 988 (1030)
||++||+|||+|+||+ +++|+|||+||||++| .|||.
T Consensus 631 LQ~ltY~Lchmy~nst~~svsvPAP~~YAhklAk~~~r~ 669 (685)
T 3ho1_A 631 LAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRL 669 (685)
T ss_dssp HHHHHHHGGGCCSSCSSSCCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999977751168999998675789999999999873
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=662.90 Aligned_cols=363 Identities=27% Similarity=0.462 Sum_probs=304.6
Q ss_pred CCCCCCCC-CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HHH
Q ss_conf 12234225-531211399994899666550889999999999870920257842146433332357813799999--999
Q 001684 595 FLESHVFE-GTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKL--KKI 671 (1030)
Q Consensus 595 l~~~kf~~-~~~i~~W~ii~~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l--~~i 671 (1030)
|++++|++ ++++++|+++++.+. .+...+..|++.|.+.|+.+||.+..+......... + ..+..+ +.+
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~-~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~-----~--~~~~~~~~~~~ 73 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGS-KANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSV-----P--GSEKEFFAKVK 73 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECS-SCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEEC-----C--SSHHHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEECCC-----C--CHHHHHHHHHH
T ss_conf 988885169972778999990277-787999999999999998769774799875410377-----8--63878589875
Q ss_pred HHHHCCCCCEEEEEEECCCCC-HHHHHHHHHHCCCEEEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 998339973999998069921-899999875214702376740333575167--89999999985129801330688988
Q 001684 672 HEAASNNLQLLICVMERKHKG-YADLKRIAETSVGVVSQCCLYSNLGKLSSQ--FLANLALKINAKVGGCTVALYNSLPS 748 (1030)
Q Consensus 672 ~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~~~~GV~TQci~~~t~~k~~~q--~~~Ni~lKiNaKLGG~n~~l~~~~~~ 748 (1030)
.. ..+++|||||+|+++.+ |+.||++||++.||+||||..+++.|.+.| +++||+||||+||||+||.|++.
T Consensus 74 ~~--~~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~--- 148 (388)
T 2yha_A 74 EL--MSSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP--- 148 (388)
T ss_dssp HH--HHTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC---
T ss_pred HC--CCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC---
T ss_conf 04--5898299999789983489999998710579750898345605767489999999999999718933122566---
Q ss_pred CCCCCCCCCCCEEEEEEEECCCC---CC--CCCCCEEEEEEEEECCCCCCEEEEEEEEEC-CCEEEEECHHHHHHHHHHH
Q ss_conf 99976679999399999831899---99--999981899998405877650238999913-7611000276589999999
Q 001684 749 QIPRLFFPDEPVIFMGADVTHPH---PL--DDFSPSVAAVVGSMNWPAANKYASRMRSQT-HRQEIIQDLGVMVGELLDD 822 (1030)
Q Consensus 749 ~ip~~~~~~~~tmiiG~DVsHp~---~~--~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~-~~~E~i~~l~~~~~~~L~~ 822 (1030)
+| ++...+|||||+||+||+ || ....|||+|+|||+|. .+++|.+.+++|. +++|+|++|++|+.++|+.
T Consensus 149 -~~--~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l~~~~~~~L~~ 224 (388)
T 2yha_A 149 -IP--LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQFTDKFKTRLEL 224 (388)
T ss_dssp -CH--HHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred -CC--CCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf -55--45778779998777515656777767899879998777599-977797899986888625799999999999999
Q ss_pred HHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC-CCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 999---809999579998289892579999999999999998517-999-998999999633555444379999987788
Q 001684 823 FYH---ELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRF-PGY-SPPITFVVVQKRHHTRLFPYDNDPSSAHNQ 897 (1030)
Q Consensus 823 f~~---~~g~~P~~IIiYRDGVSEgqf~~Vl~~Ei~~Ik~a~~~~-~~~-~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~ 897 (1030)
|++ +++.+|+||||||||||||||.+|+++|+++|++||.++ +++ +|+||||||+||
T Consensus 225 ~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr------------------ 286 (388)
T 2yha_A 225 WRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG------------------ 286 (388)
T ss_dssp HHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC--------------------
T ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC------------------
T ss_conf 98756543789752899946867257999999999999999998514467986799996466------------------
Q ss_pred CCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCC------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 998999980100442236986408984307865544551699970799------88988999999997521366689822
Q 001684 898 SSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDN------KFTSDELQKLVYNLCYTFVRCTKPVS 971 (1030)
Q Consensus 898 ~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~------~~~~d~Lq~lTy~LC~~y~r~t~sVs 971 (1030)
+|||||+||+||+ ++++|+||+|||+|||+|+|||++||
T Consensus 287 -----------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVs 331 (388)
T 2yha_A 287 -----------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVS 331 (388)
T ss_dssp ---------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC---------
T ss_pred -----------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf -----------------------------------688269998278643345799999999999999777533258877
Q ss_pred CCCCCHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 3430033999998600001347-7632458876433689999999854440134780419
Q 001684 972 LVPPAYYAHLAAYRGRLYLERS-ESATLMGSSSAICRAAPPKAAPLPKLSENVKKLMFYC 1030 (1030)
Q Consensus 972 lPaP~yYA~~~a~R~r~yl~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~M~y~ 1030 (1030)
+|||+||||++|+|||.|+.+. +.++++++.+ +++ ......++++|++++++||||
T Consensus 332 ipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 332 ICPPAYYADLVCDRARIHQKELFDALDENDSVK--TDD-FARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp -CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCC--HHH-HHHHHHHTCCCGGGTTSCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCC-CCCCCCCCCCCHHHCCCCEEC
T ss_conf 575899999999999998554126777666667--776-433223466597763784369
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=457.09 Aligned_cols=360 Identities=14% Similarity=0.058 Sum_probs=259.4
Q ss_pred EECCCCEECC--CCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEEECCCCCCCCCHHHHHHHHHHHHH---
Q ss_conf 9159941218--998510---035776776422122342255312--113999948996665508899999999998---
Q 001684 567 ILQPPKLKLG--DGGHIR---DLVPCRHDRQWNFLESHVFEGTRI--ERWALLSFGGSHDQKSAIPKFICQLSQRCE--- 636 (1030)
Q Consensus 567 vL~pP~I~yg--~~~~~~---~~~p~~~~G~Wnl~~~kf~~~~~i--~~W~ii~~~~~~~~~~~~~~f~~~L~~~~~--- 636 (1030)
-|..|.+.|+ ++.+.. ...|. .| +++.+.+..... .+|++|+..+. .. |++.|.+.+.
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~--~g---l~~~gpy~~~~~~~~~w~vI~~~~~---~~----~l~~l~~~~~~~~ 72 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELI--KG---LRNYGPYEVPSLKYNQIALIHNNQF---SS----LINQLKSQISSKI 72 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHH--HH---HHHHCCSBCCCCSSSEEEEEESCTT---CH----HHHHHHHHHHHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCHH--HH---HHHCCCCCCCCCCCCEEEEEECCCC---HH----HHHHHHHHHHHCC
T ss_conf 44787534412479734444567878--99---9866997467788988999977330---89----9999987533128
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE--------ECCCCCHHHHHHHHHHCCCEEE
Q ss_conf 70920257842146433332357813799999999998339973999998--------0699218999998752147023
Q 001684 637 QLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVM--------ERKHKGYADLKRIAETSVGVVS 708 (1030)
Q Consensus 637 ~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIl--------p~~~~~Y~~IK~~~~~~~GV~T 708 (1030)
..++.+..+... .+. ..+.+++.++ .+++++|||+ |.++..|-.+|+ ++++.||+|
T Consensus 73 g~~f~~~~~~~~---~~~-----y~~~i~~~l~-------~~~~lvlvilp~~~~~~~~~~~~~~y~~K~-~~~~~gvpt 136 (427)
T 2w42_A 73 DEVWHIHNINIS---EFI-----YDSPHFDSIK-------SQVDNAIDTGVDGIMLVLPEYNTPLYYKLK-SYLINSIPS 136 (427)
T ss_dssp HHTTCCCSCEEE---EEE-----CSSSSHHHHH-------HHHHHHHHHCCSEEEEEESSCCHHHHHHHH-HHHHTTSCE
T ss_pred CCCEEECCCCCC---HHH-----HHHHHHHHHC-------CCCCEEEEEEECCCCCCCCCCCCCHHHHHH-HHHCCCCCC
T ss_conf 984053577678---078-----9999999743-------799799999976010458987750599999-986799675
Q ss_pred EEEEECCCCCCCH-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf 7674033357516-789999999985129801330688988999766799993999998318999999998189999840
Q 001684 709 QCCLYSNLGKLSS-QFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSM 787 (1030)
Q Consensus 709 Qci~~~t~~k~~~-q~~~Ni~lKiNaKLGG~n~~l~~~~~~~ip~~~~~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~ 787 (1030)
|||..+|+.+.+. +++.||++||||||||+||+|+.. .| ..++||||+||+|++++ +++|++.+.
T Consensus 137 Q~I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~-----~~~~miiGidv~h~~~~-----~v~g~a~v~ 202 (427)
T 2w42_A 137 QFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PE-----KGSDIIIGTGATRIDNV-----NLFCFAMVF 202 (427)
T ss_dssp EEEEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TT-----SSCSEEEEEEEEESSSS-----EEEEEEEEE
T ss_pred EEEEHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CC-----CCCEEEEEEEEEECCCC-----CEEEEEEEE
T ss_conf 89873354556505699999999978738966064567----89-----89869997899876999-----579999998
Q ss_pred CCCCCCEEEEEEEEECCCEEEEECHHHHHHHHHHHHHH-HCCCCCC--EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 58776502389999137611000276589999999999-8099995--79998289892579999999999999998517
Q 001684 788 NWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYH-ELNKLPR--RIIFFRDGVSETQFYKVLQEELQSIREACSRF 864 (1030)
Q Consensus 788 d~~~~~ky~s~~~~Q~~~~E~i~~l~~~~~~~L~~f~~-~~g~~P~--~IIiYRDGVSEgqf~~Vl~~Ei~~Ik~a~~~~ 864 (1030)
|. ....+...+..|.+++|++++|.+++.++|+.|++ .++.+|+ ||||| ||+..+.++|+++|++||.++
T Consensus 203 ~~-~g~~~~~~~~~~~~~~E~~~~l~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~~~ 275 (427)
T 2w42_A 203 KK-DGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVEEL 275 (427)
T ss_dssp CT-TSCEEEEEECCCEEGGGHHHHHHHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHHHH
T ss_pred CC-CCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHHHHHHHH
T ss_conf 38-99789998884277067999999999999999998742789982599999------214111699999999999871
Q ss_pred C-----CCCCCEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCC------C
Q ss_conf 9-----9999899999963355-54443799999877889989999801004422369864089843078655------4
Q 001684 865 P-----GYSPPITFVVVQKRHH-TRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKG------T 932 (1030)
Q Consensus 865 ~-----~~~Pkit~Ivv~Krh~-tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qG------T 932 (1030)
. +++|+++||+|+|||| +|+|..+ ..+||+||||||.+ ++|||.+|.+.|+ +
T Consensus 276 ~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~----------~~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~ 339 (427)
T 2w42_A 276 KKQEMVSRDVKYAILHLNETHPFWVMGDPN----------NRFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEM 339 (427)
T ss_dssp HHTTSSCTTCEEEEEEEEECCCEEEEC------------------CCSEEEESS------SSEEEEEEEC---------C
T ss_pred CCCCCCCCCCCEEEEEEECCCCCEEEECCC----------CCCCCCCCEEEECC------CCEEEEEEEEEECCCCCCCC
T ss_conf 544345788877999998166654665478----------88998996499758------98089999745236566565
Q ss_pred ---CCCEEEEEEEC----CCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf ---45516999707----9988-98899999999752136668982234300339999986000013
Q 001684 933 ---SRPTHYHILWD----DNKF-TSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLE 991 (1030)
Q Consensus 933 ---arPt~Y~Vl~d----e~~~-~~d~Lq~lTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~ 991 (1030)
++||||+|++| |+++ ++|+||++||+|||+|+|+++++|+|||+||||++|+++.....
T Consensus 340 ~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~ 406 (427)
T 2w42_A 340 VTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNR 406 (427)
T ss_dssp EEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3588987999996687684459899999999998547656888889837650769999999865642
No 9
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=213.56 Aligned_cols=137 Identities=28% Similarity=0.455 Sum_probs=117.4
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEEEC----CCEEEEEEECCCCCCCCCEEECCCC
Q ss_conf 214776999999975555433220389991359999976030599996415----4005999403447876615535999
Q 001684 383 HESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRE----TVQRYRVYGLTEEVTENLWFADRDG 458 (1030)
Q Consensus 383 ~~~~~l~d~l~~~l~~~~~~~~~~~r~l~~~~~~kl~k~LkGl~V~~~h~~----~~~~~~I~gis~~~a~~~~F~~~dG 458 (1030)
+++++|+||+.++++.. +. ..+...+.++.+++++|+|++|.++|++ +++.|+|.||++.++++.+|+ .+|
T Consensus 2 ~~~~~vidfl~~~~~~~-~~---~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~-~~g 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKA-KI---NNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFE-HDG 76 (143)
T ss_dssp --CEEHHHHHHHHTTSS-CC---SSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEE-SSS
T ss_pred CCCCCHHHHHHHHHCCC-CC---CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEE-CCC
T ss_conf 88634999999986216-66---65575668999999974983999956877667873599810568995212897-499
Q ss_pred CCEEHHHHHHHHCCCCCCCCCCCEEEEC-CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 7001999999652963346999649816-898621233231002586435999979999998721699
Q 001684 459 KNIRLLSYFKDHYNYNIQFRNLPCLQIS-RSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQR 525 (1030)
Q Consensus 459 ~~iSVaeYFk~~Yni~L~~p~lPlv~vg-~~k~~ylP~Elc~I~~~Qr~~~kLs~~q~s~mik~a~~~ 525 (1030)
.++||+|||+++ |++|+||+||||++| +.+++|||||||.|+|||+++++|+++|+++|||+||++
T Consensus 77 ~~isv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 77 KKVTIASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp CEEEHHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred CEEEHHHHHHHC-CCCCCCCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 779899999872-9977899987587437889758511858805895224318989999999998359
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=203.45 Aligned_cols=138 Identities=33% Similarity=0.573 Sum_probs=120.8
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 23422553121139999489966655088999999999987092025784214643333235781379999999999833
Q 001684 597 ESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAAS 676 (1030)
Q Consensus 597 ~~kf~~~~~i~~W~ii~~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~ 676 (1030)
+++|+.++++++|+++++++. .+...++.|++.|.+.|+.+||.+.+++.+ +.... ..+.+|..++.+.+.+
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~-~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~-~~~~~-----~~~~~e~~l~~~~~~~- 73 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTR-IDRGLPQEFCKQLIGMCVSKGMEFKPQPAI-PFISC-----PPEHIEEALLDIHKRA- 73 (139)
T ss_dssp CEEEEECCEECSEEEEECCSS-SCTTHHHHHHHHHHHHHHHHTCEECSSCSS-CCEEC-----CGGGHHHHHHHHHHHC-
T ss_pred CCEECCCCCCCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCEE-EEECC-----CCHHHHHHHHHHHHHC-
T ss_conf 886835852574899983697-798999999999999999849834899887-56368-----8336999999999756-
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 997399999806992189999987521470237674033357516789999999985129801330
Q 001684 677 NNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVAL 742 (1030)
Q Consensus 677 ~~~~lvlvIlp~~~~~Y~~IK~~~~~~~GV~TQci~~~t~~k~~~q~~~Ni~lKiNaKLGG~n~~l 742 (1030)
.+++|+|||+|+++..|+.||++||++.||+||||..+++.|.+.||++||+||||+||||+||.|
T Consensus 74 ~~~qlv~~ilp~~~~~Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 74 PGLQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp TTCSEEEEECCSSSSCHHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 899689999899997589999988516883439961455057778899999999822127555719
Done!