BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001686
(1029 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/1046 (54%), Positives = 711/1046 (67%), Gaps = 64/1046 (6%)
Query: 1 MLPGSNIEMLPNLEDGLRGQNGNLSLEDSLQTELELILQRQPDRQIV--NRERDVNIYRS 58
M+ S ++ NL RG N+ LED Q ELE +LQ+ ++Q RERD++++RS
Sbjct: 1 MVTNSYMDTRSNLTSVNRG--SNVDLEDRFQRELESLLQQHRNQQSFGRERERDIDVHRS 58
Query: 59 GSAPPTVEGSLNAVGSLFLRDNPGSICNTAAGGSGGNGDINGILSEDEIRSHPAYLSYYY 118
GSAPPTVEG L A+ + +L +N + S + +LS+DE+R HP YLSYYY
Sbjct: 59 GSAPPTVEGLLRAMDNQYLNNNNSDHRDVGNISSITTSNGVELLSDDELRWHPEYLSYYY 118
Query: 119 SHENINPRLPPPLVSKEDWRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISV 178
S+E+ NPRLPPPL+S+EDWRVAQRF S + +WRKK V + SSLFS+QPG+ V
Sbjct: 119 SNEHSNPRLPPPLLSREDWRVAQRFHNSESVFDPVGEWRKKTVEVDNSSSLFSVQPGVPV 178
Query: 179 LQAENDLMELRNAARRNLSRDASAEWLERGSDRLIGVPA-AGLGSRRKSFADILQEGLDR 237
QAENDLMELRNA + R + L++G + LIG+ +GLG RRKSFADILQEGL+R
Sbjct: 179 EQAENDLMELRNAVAQ--GRSQKVQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLER 236
Query: 238 PASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESL-EVLHSAAASPGLVRTKSHN 296
A+L LSRPASCN + ++ + AG + + + LHS A +
Sbjct: 237 DAALGSQLSRPASCNTFRDMKDAAVLSNFSAGGFDSPLAFHDSLHSTAKNS--------- 287
Query: 297 RIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGSRVGAVEKNGAVGSNVQN--DI 354
P+ S + S + R+ TP++ LVGRS+ SGLPP+G+RVG VEK G+ +QN
Sbjct: 288 --PNTMLGSTMSSPVPRNRTPDSHLVGRSTASGLPPIGTRVGPVEKKNTFGTAIQNCESY 345
Query: 355 ELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKS 414
AD+A TLS L++S + E +H+QSQLQ+ +NQSD + NGH ++++QQ +
Sbjct: 346 TAADVADTLSRLNMSEMSQVKE-NHMQSQLQVELENQSDVMRYIPNGHKKALRQQNTAE- 403
Query: 415 TADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSSPNL------YSKMNSTG 468
T D+L FS +Y + G +L AS + S+GQVNI KRTSS +S++ S G
Sbjct: 404 TKDHL-FSANYGGMS---GYGASLGASTVGSHGQVNIPKRTSSSASLYSTSDHSRLGSVG 459
Query: 469 FGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHF----DTVGIGATRNLNGM 524
+ +N NI+ DF+ +G Y KLNSL H+ G G ++LN +
Sbjct: 460 LSDVN-----IRNGNINGTDFS-TAGGYMAKNKLNSLAEHYSAEGSHLTGDGDRQSLNRL 513
Query: 525 VNQVALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHL 584
+NQVA + HSP MDP Y+QYL S S A+ D RN+FG+S GD+ +L
Sbjct: 514 INQVASELHSPVMDPHYSQYLHTAS-----STAAPIDHSLIRNNFGTSNGDT---ANEYL 565
Query: 585 ELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNER 644
+LLAQ QQ LG ++E+ Y L Y GN +P S S +F N R
Sbjct: 566 AMLLAQNRQQ-----LGNLNAANSRFFESPSYDLGNMYLGNHLPSP---SKNSRNFQNMR 617
Query: 645 NSRFTSMMRSSMGGPM-PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFS 703
S+ SMM+ GG H+D G E +SLL+ FK NKTRS ELS+IV HV+EFS
Sbjct: 618 MSQSASMMKVPFGGLQGSSHVDIGSTAE----ASLLEGFKNNKTRSLELSEIVGHVIEFS 673
Query: 704 TDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQL 763
DQYGSRFIQQKLE AT EEK IFPEI+P+ RTLMTDVFGNYVIQKFFEHGT QR +L
Sbjct: 674 MDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKEL 733
Query: 764 ASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKC 823
A Q+TGHVL LSLQMYGCRVIQKALEVV ++QQ +MV ELDGSVMKCVHDQNGNHVIQKC
Sbjct: 734 AEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKC 793
Query: 824 IECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNL 883
IE +PQD IQFIISSFYG+V+ALSTHPYGCRVIQRVLEH DD TQ+IIM+EIM VC L
Sbjct: 794 IERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTL 853
Query: 884 AQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQL 943
AQDQYGNYVIQH+++HGKPHER+ +I +LAGQIV+MSQQKFASNVVEKCLTFG PEERQ+
Sbjct: 854 AQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQV 913
Query: 944 LINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYG 1003
L+NEMLG TDENEPLQAMMKDPFGNYVVQKVLETCDDQSL LILSRI+VHLN LK+YTYG
Sbjct: 914 LVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYG 973
Query: 1004 KHIVSRIEKLIATGERRIGLSSSVSS 1029
KHIV+R+EKLI TGERRIGLSSS+++
Sbjct: 974 KHIVARVEKLITTGERRIGLSSSLAA 999
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/1035 (45%), Positives = 623/1035 (60%), Gaps = 117/1035 (11%)
Query: 21 NGNLSLEDSLQTELELILQRQPDRQIV--NRERDVNIYRSGSAPPTVEGSLNAVGSLFLR 78
N + S D + E+ ++L Q RQ+ ER++N++RSGSAPPTV+GS++A G LF
Sbjct: 14 NEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLFRSGSAPPTVDGSVSAAGGLFSG 73
Query: 79 DNPGSICNTAA--GGSGGNGDINGILSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKED 136
G+G GD ++E R PAYLSYYY++ +NPRLPPPL+S+ED
Sbjct: 74 GGGAPFLEFGGVNKGNGFGGD------DEEFRKDPAYLSYYYANMKLNPRLPPPLMSRED 127
Query: 137 WRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISVLQAENDLMELRNAARRNL 196
RVAQR +G + LG + D RK VN D SLFSM PG + E
Sbjct: 128 LRVAQRLKGSNNVLGGVGDRRK--VN--DNRSLFSMPPG---FEGEK------------- 167
Query: 197 SRDASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLDRPASLSGHLSRPASCNAYGE 256
+ +++EW ++ LIG+P GLG ++KSFADI Q + ++ SRPAS N + E
Sbjct: 168 TGASASEW---DANGLIGLPGLGLGGKQKSFADIFQADMGHGHPVAQQPSRPASRNTFDE 224
Query: 257 IVGTGIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRIPSHSFASAVGSSLSRSTT 316
V D++ S + ++ + A SP +S+A+ +GSSLSR+ T
Sbjct: 225 NV-----DSNNNLSPSASQGI-----GAPSP-------------YSYAAVLGSSLSRNGT 261
Query: 317 PEAQLVGRSSGSGLPPVGS-RVGAVEKNGAVGSNVQNDI-----ELADIAATLSGLSLSN 370
P+ Q + R L P+GS R+ + +K + N + E +D+ LSGL+LS
Sbjct: 262 PDPQAIARVPSPCLTPIGSGRMSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSC 321
Query: 371 IRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKSTADNLAFSTHYIDFTR 430
D+ +SQ + + + ++++ GHN+ + +F +KS H +
Sbjct: 322 SVGLDD----RSQAEQDVEKVRNYMFGLQGGHNEVNQHEFPNKSD------QAHKATGSL 371
Query: 431 KNGIVPNLNASAINSN-GQVNILKRTSSPNLY---SKMNSTGFGGSSRSVGRQQNA---- 482
+N + + SA N G N ++ SPN +N + +G A
Sbjct: 372 RNSQLRGPHGSAYNGGVGLANPYQQLDSPNYCLNNYALNPAVASMMANQLGNNNFAPMYD 431
Query: 483 NISSLDFTNVSGDYSVNQKLNSLVNHHFDTVGIGATRNLNGMVNQV---ALDFHSPPMDP 539
N+S+L F+ + + ++S N + +RNL N++ S +DP
Sbjct: 432 NVSALGFSGMDSRHHGRGFVSSGQN-------LSESRNLGRFSNRMMGGGAGLQSHMVDP 484
Query: 540 RYAQYLQRTSDYATRSAASASDPFAARNHFG-SSLGDSDGLQKAHLELLLAQQNQQHEMQ 598
Y QY S +DP RN G SS D LQ+A+L Q Q+ +
Sbjct: 485 MYNQY--------ADSLDLLNDPSMDRNFMGGSSYMDMLELQRAYL----GAQKSQYGVP 532
Query: 599 LLGKSGGLFP---GYYETQPYRLDMQYSGNTFANPVLP-SVGSGSFP---NERNSRFTSM 651
KSG P YY + + +M Y G+ A+ +P S+ S P +E N RF S
Sbjct: 533 Y--KSGS--PNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRDEVNMRFPSA 588
Query: 652 MRSSMGGPM-PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSR 710
R+ GG M WH+DA + EG SS+L+EFK+NKTR FELS+I HVVEFS+DQYGSR
Sbjct: 589 TRNYSGGLMGSWHMDASFD-EG-FGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSR 646
Query: 711 FIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGH 770
FIQQKLE AT +EK ++ EI+P A LMTDVFGNYVIQKFFEHG QR +LA +L H
Sbjct: 647 FIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDH 706
Query: 771 VLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQD 830
VL LSLQMYGCRVIQKA+EVV +DQ+ +MV ELDG VM+CV DQNGNHV+QKCIEC+P++
Sbjct: 707 VLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEE 766
Query: 831 RIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGN 890
I+FIIS+F+G VV LSTHPYGCRVIQRVLEHC D +TQ +M+EI+ V LAQDQYGN
Sbjct: 767 NIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGN 826
Query: 891 YVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLG 950
YV+QHVLEHGKP ERT +I +LAG+IV+MSQQKFASNVVEKCLTFG PEER+LL+NEMLG
Sbjct: 827 YVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLG 886
Query: 951 STDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRI 1010
+TDENEPLQAMMKD F NYVVQKVLETCDDQ ELIL+RI+VHL LKKYTYGKH+V+RI
Sbjct: 887 TTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTALKKYTYGKHVVARI 946
Query: 1011 EKLIATGERRIGLSS 1025
EKL+A GERR+ L S
Sbjct: 947 EKLVAAGERRMALQS 961
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1029 (45%), Positives = 617/1029 (59%), Gaps = 110/1029 (10%)
Query: 21 NGNLSLEDSLQTELELILQRQPDRQIV--NRERDVNIYRSGSAPPTVEGSLNAVGSLFLR 78
N + S D + E+ ++L Q RQ+ ER++N+YRSGSAPPTV+GSL+A G LF
Sbjct: 15 NEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGSLSAAGGLFSG 74
Query: 79 DNPGSICNTAA--GGSGGNGDINGILSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKED 136
S G+G GD ++E R PAYLSYYY++ +NPRLPPPL+S+ED
Sbjct: 75 GGGASFLEFGGVNKGNGFGGD------DEEFRKDPAYLSYYYANMKLNPRLPPPLMSRED 128
Query: 137 WRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISVLQAENDLMELRNAARRNL 196
RVAQR +G + LG + D RK VN D SLFSM PG A +
Sbjct: 129 LRVAQRLKGSNNVLGGVGDRRK--VN--DSRSLFSMPPGFE-------------AGKPGA 171
Query: 197 SRDASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLDRPASLSGHLSRPASCNAYGE 256
S ++EW G GLG ++KSFADI Q + P + SRPAS N + E
Sbjct: 172 S---ASEWDANGLI------GLGLGGKQKSFADIFQADMGHP--VVQQPSRPASRNTFDE 220
Query: 257 IVGTGIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRIPSHSFASAVGSSLSRSTT 316
V D++ S + ++ + A SP + +A+ +GSSLSR+ T
Sbjct: 221 NV-----DSNNNLSPSASQGI-----GAPSP-------------YCYAAVLGSSLSRNGT 257
Query: 317 PEAQLVGRSSGSGLPPVGS-RVGAVEKNGAVGSNVQNDI-----ELADIAATLSGLSLSN 370
P+ Q + R L P+GS RV + +K + N + E +D+ LSGL+LS
Sbjct: 258 PDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSG 317
Query: 371 IRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKSTADNLAFSTHYIDFTR 430
DE + Q + + + ++++ +GHN+ F ++S S
Sbjct: 318 TGGLDE----RGQAEQDVEKVRNYMFGLQDGHNEVNPHGFPNRSDQARGTASC------- 366
Query: 431 KNGIVPNLNASAINS-NGQVNILKRTSSPNLYSKMNSTGFGGSSRSVGRQQNANISSLDF 489
+N + SA NS +G N + SPN Y+ +N + + Q N S +
Sbjct: 367 RNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYA-LNPA----VASMMANQLGTNNYSPMY 421
Query: 490 TNVSGDYSVNQKLNSLVNHHFDTVG--IGATRNLNGMVNQVALDFHSPP---MDPRYAQY 544
N S + + L F + G + +RN+ + N++ P DP Y QY
Sbjct: 422 ENASATLGYSAMDSRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGTGHPSHLADPMYHQY 481
Query: 545 LQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSG 604
R S+ A S +DP RN +G+S + +Q+A+L +Q+ + L KSG
Sbjct: 482 -ARFSENAD-SFDLLNDPSMDRN-YGNSYMNMLEIQRAYL------GSQKSQYGLPYKSG 532
Query: 605 GLFP---GYYETQPYRLDMQYSGNTFANPVLP-SVGSGSFPNER---NSRFTSMMRSSMG 657
P YY + + +M Y G+ A+ +P S+ S P R N R+ + R+ G
Sbjct: 533 S--PNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTG 590
Query: 658 GPM-PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKL 716
G M WH+DA ++ EG SS+L+EFK+NKTR FELS+I HVVEFS+DQYGSRFIQQKL
Sbjct: 591 GVMGSWHMDASLD-EG-FGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKL 648
Query: 717 EAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSL 776
E AT +EK ++ EI+P A LMTDVFGNYVIQKFFEHG QR +L +L +VL LSL
Sbjct: 649 ETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSL 708
Query: 777 QMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFII 836
QMYGCRVIQKA+EVV +DQ+ QMV ELDG VM+CV DQNGNHV+QKCIEC+P++ I+FII
Sbjct: 709 QMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFII 768
Query: 837 SSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHV 896
S+F+G VV LSTHPYGCRVIQRVLEHC + +TQ +M+EI+ V L QDQYGNYV+QHV
Sbjct: 769 STFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHV 828
Query: 897 LEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENE 956
LEHGKP ERT +I +LAG+IV+MSQQKFASNVVEKCLTFG PEER+LL+NEMLG+TDENE
Sbjct: 829 LEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENE 888
Query: 957 PLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIAT 1016
PLQAMMKD F NYVVQKVLETCDDQ ELIL+RI+VHLN LKKYTYGKHIV+R+EKL+A
Sbjct: 889 PLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAA 948
Query: 1017 GERRIGLSS 1025
GERR+ L S
Sbjct: 949 GERRMALQS 957
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 688 RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA------RTLMTD 741
R+ + ++ +V+ S ++ S +++ L EE+ + E++ + +M D
Sbjct: 837 RTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKD 896
Query: 742 VFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA 801
F NYV+QK E + QR + +++ H+ L YG ++ + ++V ++ +
Sbjct: 897 QFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQ 956
Query: 802 EL 803
L
Sbjct: 957 SL 958
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1026 (45%), Positives = 611/1026 (59%), Gaps = 95/1026 (9%)
Query: 21 NGNLSLEDSLQTELELILQRQPDRQIV--NRERDVNIYRSGSAPPTVEGSLNAVGSLFLR 78
N + S D + E+ ++L Q RQ+ ER++N+YRSGSAPPTV+GS++A G LF
Sbjct: 14 NEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGSVSAAGGLFSG 73
Query: 79 DNPGSICNTAAGGSGGNGDINGILSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKEDWR 138
G G + ++E R PAYLSYYY++ +NPRLPPPL+S+ED R
Sbjct: 74 GGGAPFLEFGGGNKGNGFGGD----DEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLR 129
Query: 139 VAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISVLQAENDLMELRNAARRNLSR 198
VAQR +G + LG + D RK VN D SLFSM PG + +E +A+
Sbjct: 130 VAQRLKGSSNVLGGVGDRRK--VN--DSQSLFSMPPGFDQRKQHEFEVEKTSAS------ 179
Query: 199 DASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLDRPASLSGHLSRPASCNAYGEIV 258
S+EW ++ LIG+P G+G ++KSFADI Q + ++ SRPAS N + E V
Sbjct: 180 --SSEW---DANGLIGLPGLGIGGKQKSFADIFQADMGHGHPVTKQPSRPASRNTFDENV 234
Query: 259 GTGIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRIPSHSFASAVGSSLSRSTTPE 318
D+ S + ++ + A SP +S+A+ +GSSLSR+ TP+
Sbjct: 235 -----DSKNNLSPSASQGI-----GAPSP-------------YSYAAVLGSSLSRNGTPD 271
Query: 319 AQLVGRSSGSGLPPVGSRVGAVEKNGAVGSNVQNDI-----ELADIAATLSGLSLSNIRH 373
Q + R L P+GS G V N ++ Q+ E +D+ LSG++LS
Sbjct: 272 PQAIARVPSPCLTPIGS--GRVSSNDKRNTSNQSPFNGGLNESSDLVNALSGMNLSGSGG 329
Query: 374 ADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKSTADNLAFSTHYIDFTRKNG 433
DE + Q + + + ++++ GHN+ + F +KS D +T + +N
Sbjct: 330 LDE----RGQAEQDVEKVRNYMFGLQGGHNEVNQHGFPNKS--DQAQKATGLL----RNS 379
Query: 434 IVPNLNASAINSNGQVNI-LKRTSSPNLYSKMNSTGFGGSSRSV-GRQQNANISSLDFTN 491
+ S N G V + SPN +N+ G + S+ Q N S + N
Sbjct: 380 QLRGAQGSTYNDGGGVATQYQHLDSPNYC--LNNYGLNPAVASMMANQLGTNNYSPVYEN 437
Query: 492 VSGDYSVNQKLNSLVNHHFDTVGIG----ATRNLNGMVNQV---ALDFHSPPMDPRYAQY 544
S ++ H V G +RNL N++ S DP Y QY
Sbjct: 438 ASAASAMGFSGMDSRLHGGGYVSSGQNLSESRNLGRFSNRMMGGGTGLQSHMADPMYHQY 497
Query: 545 LQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSG 604
S +DP N G+S + LQ+A+L Q Q+ + KSG
Sbjct: 498 --------ADSLDLLNDPSMDVNFMGNSYMNMLELQRAYL----GAQKSQYGVPY--KSG 543
Query: 605 GLFPGYYETQPYRLDMQYSGNTFANPVLP-SVGSGSFPNER---NSRFTSMMRSSMGGPM 660
P + Y G+ A+ +LP S+ S P R N R+ S R+ GG M
Sbjct: 544 S--PNSHTDYGSPTFGSYPGSPLAHHLLPNSLVSPCSPMRRGEVNMRYPSATRNYAGGVM 601
Query: 661 -PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAA 719
WH+DA ++ EG SS+L+EFK+NKTR FEL++I HVVEFS+DQYGSRFIQQKLE A
Sbjct: 602 GSWHMDASLD-EG-FGSSMLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETA 659
Query: 720 TAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMY 779
T++EK ++ EI+PHA LMTDVFGNYVIQKFFEHG QR +LA +L +VL LSLQMY
Sbjct: 660 TSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMY 719
Query: 780 GCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSF 839
GCRVIQKA+EVV +DQ+ +MV ELDG VM+CV DQNGNHV+QKCIEC+P++ I+FIIS+F
Sbjct: 720 GCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTF 779
Query: 840 YGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEH 899
+G VV LSTHPYGCRVIQRVLEHC D +TQ +MDEIM + LAQDQYGNYVIQHVLEH
Sbjct: 780 FGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEH 839
Query: 900 GKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQ 959
GKP ERT +I +LAG+IV+MSQQKFASNVVEKCLTFG PEER+ L+NEMLG+TDENEPLQ
Sbjct: 840 GKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQ 899
Query: 960 AMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGER 1019
AMMKD F NYVVQKVLETCDDQ ELIL RI+VHLN LKKYTYGKHIV+R+EKL+A GER
Sbjct: 900 AMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGER 959
Query: 1020 RIGLSS 1025
R+ L S
Sbjct: 960 RMALQS 965
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 284/415 (68%), Gaps = 10/415 (2%)
Query: 610 YYETQP-YRLDMQYSGNTFANPVLPSVGSGS----FPNERNSRFTSMMRSSMGGPMP--W 662
Y+ P R+ QY G+ A+PV+PS G F +R+ S G P W
Sbjct: 534 YFAVPPGVRVMPQYPGSPLASPVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYPGGW 593
Query: 663 HLDAGIN---MEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAA 719
+ G ++ S LDE K+ R ELSDI VVEFS DQ+GSRFIQQKLE
Sbjct: 594 QGNRGGASSIVDDLKRHSFLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHC 653
Query: 720 TAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMY 779
+ EEK +F E++P A LMTDVFGNYVIQKF EHGT +QR +L QL G ++ LSLQMY
Sbjct: 654 SDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMY 713
Query: 780 GCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSF 839
GCRVIQKALEV+ VDQ+T+++ ELDG+V+KCV DQNGNHVIQKCIE +P RI F+I++F
Sbjct: 714 GCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAF 773
Query: 840 YGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEH 899
GQV LSTHPYGCRVIQR+LEHC D I+DEI++ LA DQYGNYV QHVLE
Sbjct: 774 RGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHVLER 833
Query: 900 GKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQ 959
GKP ER +I +L G +V+MSQ K+ASNVVEKCL ER+ LI E++G ++E+ L
Sbjct: 834 GKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLL 893
Query: 960 AMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLI 1014
AMMKD F NYVVQKVLE DQ E+++ R+++HL L+KYTYGKHIV+R E+L
Sbjct: 894 AMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVARFEQLF 948
Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 97/195 (49%), Gaps = 37/195 (18%)
Query: 57 RSGSAPPTVEGSLNAVGSLFLRDNPGSICNTAAGGSGGNGDINGILSEDEIRSHPAYLSY 116
RS SAPP++EGS A+ +L L+ GS + I SE+EIRS PAY++Y
Sbjct: 59 RSESAPPSMEGSFAALRNL-LKQQEGSSSEVLSRA------IENYDSEEEIRSDPAYVAY 111
Query: 117 YYSHENINPRLPPPLVSKEDWRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGI 176
Y S+ N+NPRLPPPL+S+E+ + + F G ++ W G+ RSSL S + +
Sbjct: 112 YLSNINLNPRLPPPLISRENQHLLRHF--GDNNQSPTTSWDNMGI----RSSLHSSRTAL 165
Query: 177 SVLQAENDLMELRNAARRNLSRDASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLD 236
S + E + D ++ ++ A L RRKS AD++QE D
Sbjct: 166 STHREEPE--------------DEASSGEQQS--------YASLAGRRKSIADMIQE--D 201
Query: 237 RPASLSGHLSRPASC 251
P +LS RP S
Sbjct: 202 FPLTLSSVFKRPHSA 216
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 898 EHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEP 957
E P+ R ++ +AG++V S + S +++ L S EE+ + +E+L +
Sbjct: 615 ELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASK--- 671
Query: 958 LQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATG 1017
+M D FGNYV+QK +E E ++ ++ + L YG ++ + ++I
Sbjct: 672 ---LMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVD 728
Query: 1018 ER 1019
++
Sbjct: 729 QK 730
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/506 (47%), Positives = 303/506 (59%), Gaps = 40/506 (7%)
Query: 514 GIGATRNLNGMVNQVALDFHSPP-----MDPRYAQYLQRTSDYATRSAASASDPFAARNH 568
G A ++G Q A + PP DP Y QY Q++ +P A RNH
Sbjct: 378 GPSAGSVVHGGEMQYAEKLYVPPGQPSFPDPMYMQYCQQS--------FGQMEPLAPRNH 429
Query: 569 FGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQP-YRLDMQYSGNTF 627
+ D L + N +G + YY QP + +QY
Sbjct: 430 TNAPESQKD--DPKFLRQIRGPSNSNMARPGMGVN------YYGIQPNMGIMVQYLPTHL 481
Query: 628 ANPVLPSVGSGSFPNERNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKT 687
P+ P G P + G P G N G + L+E K+ K
Sbjct: 482 GPPLSP----GHVP----------YVEAYPGWQPQGSLEGAN--GPRLCNFLEELKSGKG 525
Query: 688 RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYV 747
R F+LSDI H+VEFS DQ+GSRFIQQKLE EEK +F EI+PHA LMTDVFGNYV
Sbjct: 526 RRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYV 585
Query: 748 IQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSV 807
IQKFFE+G +QR +LA QL G ++ LSLQMYGCRVIQKAL+V+ DQ+ ++ ELDG V
Sbjct: 586 IQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQV 645
Query: 808 MKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDAN 867
M+CV DQNGNHVIQKCIE IP D++ F++ +F GQV +LS HPYGCRVIQR+LE C +
Sbjct: 646 MRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDH 705
Query: 868 TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASN 927
+ I +EI++ VC L++DQYGNYV QHVLE G ER + +L+G IV++S KFASN
Sbjct: 706 QCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASN 765
Query: 928 VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCD-DQSLELI 986
V+EKCL +G ER L+I E+ G + L MMKD +GNYVVQK+ ETC DQ L L
Sbjct: 766 VIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTL- 824
Query: 987 LSRIRVHLNVLKKYTYGKHIVSRIEK 1012
SR+R+H + LKKYTYGKHIVSR+E+
Sbjct: 825 FSRVRMHASALKKYTYGKHIVSRLEQ 850
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 690 FELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTR-IFPEIIPHARTLMTDVFGNYVI 748
F L V S YG R IQ+ LE + + + R I EI+ L D +GNYV
Sbjct: 672 FMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVT 731
Query: 749 QKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG--- 805
Q E GT +R ++ +L+GH+++LSL + VI+K LE ++ ++ E+ G
Sbjct: 732 QHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDE 791
Query: 806 ---SVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEH 862
S++ + DQ GN+V+QK E D+ + S AL + YG ++ R+ +
Sbjct: 792 SYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIVSRLEQP 851
Query: 863 CDDANTQ 869
+ N +
Sbjct: 852 SIEENQE 858
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 909 ITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGN 968
++ + G IV S + S +++ L PEE+ + E+L + +M D FGN
Sbjct: 530 LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACK------LMTDVFGN 583
Query: 969 YVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGER 1019
YV+QK E + + + ++ + L YG ++ + +I +R
Sbjct: 584 YVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQR 634
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/340 (56%), Positives = 255/340 (75%), Gaps = 4/340 (1%)
Query: 676 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 735
S LL++F+ N+ + +L D++ H+VEFS DQ+GSRFIQQKLE AT E+ +F EI+ A
Sbjct: 708 SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAA 767
Query: 736 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 795
LMTDVFGNYVIQKFFE G+ Q+ LA+++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 768 YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 827
Query: 796 Q--TQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGC 853
Q ++MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV LSTHPYGC
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGC 887
Query: 854 RVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 913
RVIQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ +++++
Sbjct: 888 RVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 946
Query: 914 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQ 972
G+++ +SQ KFASNVVEKC+T S ER LLI+E+ D + L MMKD + NYVVQ
Sbjct: 947 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQ 1006
Query: 973 KVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
K+++ + ++I+ +IR H+ L+KYTYGKHI++++EK
Sbjct: 1007 KMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 11/258 (4%)
Query: 767 LTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIEC 826
L GH++ S +G R IQ+ LE ++ + E+ + + + D GN+VIQK E
Sbjct: 727 LIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEF 786
Query: 827 IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII---MDEIMQHVCNL 883
D+ + + G V+ L+ YGCRVIQ+ LE ++ QQ+I + E+ HV
Sbjct: 787 GSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESI--SSDQQVISEMVKELDGHVLKC 844
Query: 884 AQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQL 943
+DQ GN+V+Q +E +P +I GQ+ +S + V+++ L + E+
Sbjct: 845 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 904
Query: 944 LINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYG 1003
++ E+ T++ +++D +GNYV+Q VLE + I+S IR + L ++ +
Sbjct: 905 ILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFA 958
Query: 1004 KHIVSRIEKLIATGERRI 1021
++V + + ER +
Sbjct: 959 SNVVEKCVTHASRAERAL 976
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/340 (56%), Positives = 255/340 (75%), Gaps = 4/340 (1%)
Query: 676 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 735
S LL++F+ N+ + +L D++ H+VEFS DQ+GSRFIQQKLE AT E+ +F EI+ A
Sbjct: 708 SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAA 767
Query: 736 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 795
LMTDVFGNYVIQKFFE G+ Q+ LA+++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 768 YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 827
Query: 796 Q--TQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGC 853
Q ++MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV LSTHPYGC
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGC 887
Query: 854 RVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 913
RVIQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ +++++
Sbjct: 888 RVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 946
Query: 914 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQ 972
G+++ +SQ KFASNVVEKC+T S ER LLI+E+ D + L MMKD + NYVVQ
Sbjct: 947 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQ 1006
Query: 973 KVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
K+++ + ++I+ +IR H+ L+KYTYGKHI++++EK
Sbjct: 1007 KMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 11/258 (4%)
Query: 767 LTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIEC 826
L GH++ S +G R IQ+ LE ++ + E+ + + + D GN+VIQK E
Sbjct: 727 LIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEF 786
Query: 827 IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII---MDEIMQHVCNL 883
D+ + + G V+ L+ YGCRVIQ+ LE ++ QQ+I + E+ HV
Sbjct: 787 GSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESI--SSDQQVISEMVKELDGHVLKC 844
Query: 884 AQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQL 943
+DQ GN+V+Q +E +P +I GQ+ +S + V+++ L + E+
Sbjct: 845 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 904
Query: 944 LINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYG 1003
++ E+ T++ +++D +GNYV+Q VLE + I+S IR + L ++ +
Sbjct: 905 ILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFA 958
Query: 1004 KHIVSRIEKLIATGERRI 1021
++V + + ER +
Sbjct: 959 SNVVEKCVTHASRAERAL 976
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 252/337 (74%), Gaps = 3/337 (0%)
Query: 676 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 735
S LL++F+ + + +L D+ +H+VEFS DQ+GSRFIQQKLE ATA EK +F EI+ A
Sbjct: 1093 SRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAA 1152
Query: 736 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 795
+LMTDVFGNYVIQKFFE GT Q+ L Q+ GHVL+L+LQMYGCRVIQKALE + +Q
Sbjct: 1153 YSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQ 1212
Query: 796 QTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRV 855
Q ++V ELDG V+KCV DQNGNHV+QKCIEC+ +QFII++F GQV +LSTHPYGCRV
Sbjct: 1213 QQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRV 1272
Query: 856 IQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQ 915
IQR+LEHC T I+ DE+ +H L QDQYGNYVIQHVLEHGK +++ +I + G+
Sbjct: 1273 IQRILEHCTAEQTTPIL-DELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGK 1331
Query: 916 IVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVL 975
++ +SQ KFASNVVEKC+T + ER LI+E+ T + L MMKD + NYVVQK++
Sbjct: 1332 VLVLSQHKFASNVVEKCVTHATRGERTGLIDEVC--TFNDNALHVMMKDQYANYVVQKMI 1389
Query: 976 ETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
+ + L+ ++++IR H+ L+KYTYGKHI +++EK
Sbjct: 1390 DVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEK 1426
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 126/253 (49%), Gaps = 7/253 (2%)
Query: 767 LTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIEC 826
L H++ S +G R IQ+ LE ++ + +E+ + + D GN+VIQK E
Sbjct: 1112 LANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEF 1171
Query: 827 IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQD 886
++ + G V+ L+ YGCRVIQ+ LE Q+I+ E+ HV +D
Sbjct: 1172 GTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIV-HELDGHVLKCVKD 1230
Query: 887 QYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLIN 946
Q GN+V+Q +E P +I GQ+ +S + V+++ L + E+ +++
Sbjct: 1231 QNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILD 1290
Query: 947 EMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHI 1006
E+ T++ +++D +GNYV+Q VLE + ++++ +R + VL ++ + ++
Sbjct: 1291 ELHEHTEQ------LIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNV 1344
Query: 1007 VSRIEKLIATGER 1019
V + GER
Sbjct: 1345 VEKCVTHATRGER 1357
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 912 LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVV 971
LA IV SQ + S +++ L + E+Q++ +E+L + ++M D FGNYV+
Sbjct: 1112 LANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAA------YSLMTDVFGNYVI 1165
Query: 972 QKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERR 1020
QK E + + +++ H+ L YG ++ + + I+ +++
Sbjct: 1166 QKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQ 1214
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/338 (55%), Positives = 249/338 (73%), Gaps = 2/338 (0%)
Query: 676 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 735
S LL++F+ N+ + +L +I H++EFS DQ+GSRFIQ KLE AT E+ +F EI+ A
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 889
Query: 736 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 795
LM DVFGNYVIQKFFE G+ Q+ LA ++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 890 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 949
Query: 796 QTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRV 855
Q +MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV ALSTHPYGCRV
Sbjct: 950 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1009
Query: 856 IQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQ 915
IQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ ++ ++ G
Sbjct: 1010 IQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 1068
Query: 916 IVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQKV 974
++ +SQ KFASNVVEKC+T S ER +LI+E+ D + L MMKD + NYVVQK+
Sbjct: 1069 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 1128
Query: 975 LETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
++ + ++++ +IR H+ L+KYTYGKHI++++EK
Sbjct: 1129 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 130/256 (50%), Gaps = 7/256 (2%)
Query: 766 QLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIE 825
++ GH++ S +G R IQ LE ++ + E+ + + + D GN+VIQK E
Sbjct: 848 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 907
Query: 826 CIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQ 885
++ + G V++L+ YGCRVIQ+ LE ++ Q ++ E+ HV +
Sbjct: 908 FGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP-SDQQNEMVRELDGHVLKCVK 966
Query: 886 DQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLI 945
DQ GN+V+Q +E +P +I GQ+ +S + V+++ L P++ ++
Sbjct: 967 DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL 1026
Query: 946 NEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKH 1005
E+ T++ +++D +GNYV+Q VLE + I++ IR ++ VL ++ + +
Sbjct: 1027 EELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1080
Query: 1006 IVSRIEKLIATGERRI 1021
+V + + ER +
Sbjct: 1081 VVEKCVTHASRTERAV 1096
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/338 (55%), Positives = 249/338 (73%), Gaps = 2/338 (0%)
Query: 676 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 735
S LL++F+ N+ + +L +I H++EFS DQ+GSRFIQ KLE AT E+ +F EI+ A
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 889
Query: 736 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 795
LM DVFGNYVIQKFFE G+ Q+ LA ++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 890 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 949
Query: 796 QTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRV 855
Q +MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV ALSTHPYGCRV
Sbjct: 950 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1009
Query: 856 IQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQ 915
IQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ ++ ++ G
Sbjct: 1010 IQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 1068
Query: 916 IVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQKV 974
++ +SQ KFASNVVEKC+T S ER +LI+E+ D + L MMKD + NYVVQK+
Sbjct: 1069 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 1128
Query: 975 LETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
++ + ++++ +IR H+ L+KYTYGKHI++++EK
Sbjct: 1129 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 130/256 (50%), Gaps = 7/256 (2%)
Query: 766 QLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIE 825
++ GH++ S +G R IQ LE ++ + E+ + + + D GN+VIQK E
Sbjct: 848 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 907
Query: 826 CIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQ 885
++ + G V++L+ YGCRVIQ+ LE ++ Q ++ E+ HV +
Sbjct: 908 FGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP-SDQQNEMVRELDGHVLKCVK 966
Query: 886 DQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLI 945
DQ GN+V+Q +E +P +I GQ+ +S + V+++ L P++ ++
Sbjct: 967 DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL 1026
Query: 946 NEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKH 1005
E+ T++ +++D +GNYV+Q VLE + I++ IR ++ VL ++ + +
Sbjct: 1027 EELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1080
Query: 1006 IVSRIEKLIATGERRI 1021
+V + + ER +
Sbjct: 1081 VVEKCVTHASRTERAV 1096
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/340 (55%), Positives = 250/340 (73%), Gaps = 4/340 (1%)
Query: 676 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 735
S LL++F+ N+ + +L +I H++EFS DQ+GSRFIQ KLE ATA E+ +F EI+ A
Sbjct: 831 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAA 890
Query: 736 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 795
LM DVFGNYVIQKFFE G+ Q+ LA ++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 891 YQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 950
Query: 796 QT--QMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGC 853
Q +MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV ALSTHPYGC
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 1010
Query: 854 RVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 913
RVIQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ ++ ++
Sbjct: 1011 RVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1069
Query: 914 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQ 972
G ++ +SQ KFASNVVEKC+T S ER +LI+E+ D + L MMKD + NYVVQ
Sbjct: 1070 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1129
Query: 973 KVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
K+++ + ++++ +IR H+ L+KYTYGKHI++++EK
Sbjct: 1130 KMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 131/259 (50%), Gaps = 11/259 (4%)
Query: 766 QLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIE 825
++ GH++ S +G R IQ LE ++ + E+ + + + D GN+VIQK E
Sbjct: 849 EIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 908
Query: 826 CIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII---MDEIMQHVCN 882
++ + G V++L+ YGCRVIQ+ LE + QQ+I + E+ HV
Sbjct: 909 FGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFI--PSDQQVINEMVRELDGHVLK 966
Query: 883 LAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQ 942
+DQ GN+V+Q +E +P +I GQ+ +S + V+++ L P++
Sbjct: 967 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 1026
Query: 943 LLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTY 1002
++ E+ T++ +++D +GNYV+Q VLE + I++ IR ++ VL ++ +
Sbjct: 1027 PILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKF 1080
Query: 1003 GKHIVSRIEKLIATGERRI 1021
++V + + ER +
Sbjct: 1081 ASNVVEKCVTHASRTERAV 1099
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 909 ITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGN 968
+ ++AG I+ SQ + S ++ L + ERQL+ NE+L + + +M D FGN
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQ------LMVDVFGN 900
Query: 969 YVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRI 1021
YV+QK E + + RIR H+ L YG ++ + + I + ++ I
Sbjct: 901 YVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVI 953
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/340 (55%), Positives = 249/340 (73%), Gaps = 4/340 (1%)
Query: 676 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 735
S LL++F+ N+ + +L +I H++EFS DQ+GSRFIQ KLE AT E+ +F EI+ A
Sbjct: 831 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 890
Query: 736 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 795
LM DVFGNYVIQKFFE G+ Q+ LA ++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 891 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQ 950
Query: 796 QT--QMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGC 853
Q +MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV ALSTHPYGC
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 1010
Query: 854 RVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 913
RVIQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ ++ ++
Sbjct: 1011 RVIQRILEHCLPEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1069
Query: 914 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQ 972
G ++ +SQ KFASNVVEKC+T S ER +LI+E+ D + L MMKD + NYVVQ
Sbjct: 1070 GNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1129
Query: 973 KVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
K+++ + ++++ +IR H+ L+KYTYGKHI++++EK
Sbjct: 1130 KMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 909 ITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGN 968
+ ++AG I+ SQ + S ++ L +P ERQL+ NE+L + + +M D FGN
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQ------LMVDVFGN 900
Query: 969 YVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRI 1021
YV+QK E + + RIR H+ L YG ++ + + I ++ I
Sbjct: 901 YVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVI 953
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 168/340 (49%), Positives = 236/340 (69%), Gaps = 4/340 (1%)
Query: 676 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEII-PH 734
S +L F NK R FELSDI+ +VV FSTDQ+GSRFIQQKL AT EE+ +F EI
Sbjct: 378 SRVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTS 437
Query: 735 ARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVD 794
LM D+FGNYV+QK+FE G E Q+ L SQ+ GHV LSLQMYGCRV+QKA+E + +
Sbjct: 438 CLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPE 497
Query: 795 QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCR 854
Q Q++ ELDG V+ CV DQNGNHVIQK IECI +QFI+ + Q+ LS HPYGCR
Sbjct: 498 HQVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCR 557
Query: 855 VIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAG 914
VIQR +EHC + +++I++E++ H+ L QDQYGNYV+QH+L G ++ + +
Sbjct: 558 VIQRAIEHCH--SERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMID 615
Query: 915 QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDEN-EPLQAMMKDPFGNYVVQK 973
++ +S KFASNVVE+C+++ S +R+ ++N+++ EN L MMKD + NYV+QK
Sbjct: 616 HLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQK 675
Query: 974 VLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKL 1013
+L+ ++ +L++S I H++VLKK+TYGKH++ +E+
Sbjct: 676 LLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVERF 715
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 134/271 (49%), Gaps = 9/271 (3%)
Query: 759 QRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL-DGSVMKCVHDQNGN 817
QR S + G+V+ S +G R IQ+ L +++ + E+ S ++ + D GN
Sbjct: 389 QRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGN 448
Query: 818 HVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIM 877
+V+QK E + + Q ++S G V +LS YGCRV+Q+ +E+ + Q+I E+
Sbjct: 449 YVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLI-QELD 507
Query: 878 QHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGS 937
HV + DQ GN+VIQ +E ++ L QI +S + V+++ +
Sbjct: 508 GHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCH 567
Query: 938 PEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVL 997
ER+L+I E+L + + +D +GNYVVQ +L T + + I + HL L
Sbjct: 568 -SERKLIIEELLPH------ILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFL 620
Query: 998 KKYTYGKHIVSRIEKLIATGERRIGLSSSVS 1028
+ + ++V R I+ +RR L+ +S
Sbjct: 621 SCHKFASNVVERCISYISDVDRRRILNKIIS 651
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 293 bits (749), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 219/341 (64%), Gaps = 15/341 (4%)
Query: 692 LSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKF 751
L DI H +EF DQ+GSRFIQ++L + A EK IF EI A L DVFGNYVIQKF
Sbjct: 536 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKF 595
Query: 752 FEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCV 811
FE G++ Q+ L Q G++ +LSLQMY CRVIQKALE + +Q+ ++V EL SV++ +
Sbjct: 596 FEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMI 655
Query: 812 HDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQI 871
DQNGNHVIQK IE IP +++ FI+SS G + LSTH YGCRVIQR+LE + Q+
Sbjct: 656 KDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSED-QES 714
Query: 872 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTV------ITQLAGQIVRMSQQKFA 925
I++E+ + L QDQYGNYVIQ+VL+ + + V I +A +V S+ KFA
Sbjct: 715 ILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFA 774
Query: 926 SNVVEKCLTFGSPEERQLLINEMLG-------STDENEPLQAMMKDPFGNYVVQKVLETC 978
SNVVEK + +GS ++ L+I+++L + +++ P+ M+KD F NYV+QK++
Sbjct: 775 SNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVS 834
Query: 979 DDQSLELILSRIRVHLNVLKKY-TYGKHIVSRIEKLIATGE 1018
+ + +LI+ IR +L+ L K + G ++ +EKL A E
Sbjct: 835 EGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAALVE 875
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 909 ITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGN 968
+ + G + + + S +++ L E++++ NE+ E + D FGN
Sbjct: 536 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIE------LSNDVFGN 589
Query: 969 YVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGER 1019
YV+QK E ++ + + ++ L Y ++ + + I + +R
Sbjct: 590 YVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQR 640
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 189/339 (55%), Gaps = 15/339 (4%)
Query: 698 HVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTE 757
+++ F DQ+G R++Q+ LE +F E P+ LM D FGNY+ QK FEH +E
Sbjct: 347 NILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASE 406
Query: 758 SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVV-HVDQQTQMVAELDGSVMKCVHDQNG 816
+QR+ + ++ +S M+G R +QK +++V DQ + +V L +V+ D NG
Sbjct: 407 AQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNG 466
Query: 817 NHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEI 876
NHVIQKC+ Q+ QFI + + +STH +GC V+QR +H A +Q++ + I
Sbjct: 467 NHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLV-EHI 525
Query: 877 MQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG 936
+ H L QD +GNYV+Q+VLE P+ +I+ ++ +S QKF+SNV+EKC+ F
Sbjct: 526 VPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFA 585
Query: 937 SPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNV 996
++ LI+E++ DE L +++D F NYV+Q L+ + ++ RI+ +
Sbjct: 586 PAAIKEKLISELM---DEKH-LPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPS 641
Query: 997 LKKYTYGKHIVSRIEK---------LIATGERRIGLSSS 1026
+K G+ I+S++E+ ++ + R+ SSS
Sbjct: 642 IKNTPCGRRILSKLERRHPSSKEKPIVYSNSERVNTSSS 680
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 178/323 (55%), Gaps = 11/323 (3%)
Query: 691 ELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQK 750
++S+ +V + DQ+G RF+Q E +A + IF E+IPH LM D FGNY++QK
Sbjct: 195 KVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQK 254
Query: 751 FFEHGTESQRAQLASQLT---GHVLRLSLQMYGCRVIQKALEVVHVDQQTQMV-AELDGS 806
+ E QR Q+ +T G ++R+SL YG RV+Q+ +E + +Q +V + L
Sbjct: 255 LLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPG 314
Query: 807 VMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDA 866
+ + D NGNHVIQ+C++C+ + +FI + ++TH +GC V+Q+ + +
Sbjct: 315 FLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGL 374
Query: 867 NTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFAS 926
++++ EI ++ LAQD YGNY +Q VLE ++ QL G V +S QKF+S
Sbjct: 375 QREKLVT-EISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSS 433
Query: 927 NVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELI 986
++VE+CLT PE R ++ E++ +++DP+ N+V+Q L +
Sbjct: 434 HMVERCLT-HCPESRPQIVRELISVPH----FDILIQDPYANFVIQAALAVTKGSLHATL 488
Query: 987 LSRIRVHLNVLKKYTYGKHIVSR 1009
+ IR H ++L+ Y K I SR
Sbjct: 489 VEVIRPH-SILRNNPYCKRIFSR 510
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 673 RLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEII 732
R+ L++ KT K S S + + D G+ IQ+ L+ + E+ IF +
Sbjct: 289 RVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDAT 348
Query: 733 PHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVH 792
+ T G V+QK + + QR +L ++++ + L L+ YG +Q LE+
Sbjct: 349 KFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRD 408
Query: 793 VDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFI---ISSFYGQVVALSTH 849
M+A+L G ++ + +H++++C+ P+ R Q + IS + + L
Sbjct: 409 FSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDI--LIQD 466
Query: 850 PYGCRVIQRVL 860
PY VIQ L
Sbjct: 467 PYANFVIQAAL 477
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 902 PHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAM 961
P+E +++ G + M++ + ++ GS + ++ +E++ E +
Sbjct: 189 PNESLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVE------L 242
Query: 962 MKDPFGNYVVQKVLETC-DDQSLELIL-------SRIRVHLNVLKKYTYGKHIVSRIEKL 1013
M DPFGNY++QK+L+ C ++Q ++IL IR+ LN YG +V R+ +
Sbjct: 243 MMDPFGNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLN-----AYGTRVVQRLVES 297
Query: 1014 IATGERRIGLSSS 1026
I T ++I L S
Sbjct: 298 IKT-RKQISLVKS 309
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 180/322 (55%), Gaps = 11/322 (3%)
Query: 692 LSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKF 751
+ DI +V + DQ+G RF+Q+ + T+ + IF E+I H LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKL 390
Query: 752 FEHGTESQRAQL---ASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA-ELDGSV 807
+ TE QR Q+ A++ G ++R+SL YG RV+Q+ +E + +Q +V L
Sbjct: 391 LDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGF 450
Query: 808 MKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDAN 867
+ + D NGNHVIQ+C++C+ + +FI + ++TH +GC V+Q+ + +
Sbjct: 451 LDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQ 510
Query: 868 TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASN 927
+++I EI ++ LAQD +GNY +Q V+E P ++ QL G V++S QKF+S+
Sbjct: 511 REKLIA-EISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSH 569
Query: 928 VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELIL 987
+VE+CL PE R ++ E++ ++ LQ DP+ N+V+Q L ++
Sbjct: 570 MVERCL-MHCPESRPQIVRELVSVPHFDQLLQ----DPYANFVIQAALAATKGPLHASLV 624
Query: 988 SRIRVHLNVLKKYTYGKHIVSR 1009
IR H ++L+ Y K I SR
Sbjct: 625 EVIRPH-SILRNNPYCKRIFSR 645
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 74/163 (45%)
Query: 673 RLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEII 732
R+ L++ ++ K S + ++ D G+ IQ+ L+ + E+ IF
Sbjct: 424 RVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAAT 483
Query: 733 PHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVH 792
+ T G V+QK + QR +L ++++ + L L+ +G +Q +E+
Sbjct: 484 KFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRI 543
Query: 793 VDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFI 835
M+A+L G ++ + +H++++C+ P+ R Q +
Sbjct: 544 PSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIV 586
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 176 bits (446), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 172/314 (54%), Gaps = 6/314 (1%)
Query: 698 HVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTE 757
H+ DQYG R++Q+ L+ + FPEI LM D FGNY+ QK F + +
Sbjct: 466 HLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASR 525
Query: 758 SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELD-GSVMKCVHDQNG 816
Q+ + + + ++ + +YG R +Q ++ + ++Q ++ ++ S+ D NG
Sbjct: 526 EQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNG 585
Query: 817 NHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEI 876
HV+QKCI P ++++ + S ++ L+T+ +GC ++QR L+ + + Q+ +++ I
Sbjct: 586 THVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTN-GDIQERLVNSI 644
Query: 877 MQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG 936
++ L Q+ YGNY++QHVLE +I + G I ++S QKF+SN +E+C+
Sbjct: 645 IKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTA 704
Query: 937 SPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNV 996
SP R+ ++ E L + ++ ++ D + NYV+Q+ L D+ LIL I +
Sbjct: 705 SPSTREQMLQEFLSFPN----IEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPK 760
Query: 997 LKKYTYGKHIVSRI 1010
++ +G+HI++++
Sbjct: 761 IQNTRHGRHILAKL 774
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 170/316 (53%), Gaps = 9/316 (2%)
Query: 699 VVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTES 758
+ + DQ+G RF+Q+ + IF EII + LM D FGNY++QK E E
Sbjct: 282 IYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNED 341
Query: 759 QRAQLASQLT---GHVLRLSLQMYGCRVIQKALEVVHVDQQTQMV-AELDGSVMKCVHDQ 814
QR Q+ +T G ++++S M+G R +QK +E +++ ++ + L ++ + +
Sbjct: 342 QRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNV 401
Query: 815 NGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMD 874
NGNHV+Q+C++ + +F+ + V L+T +GC V+Q+ L + + Q ++
Sbjct: 402 NGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLV-S 460
Query: 875 EIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLT 934
EI + L+QD +GNYV+Q+V E ++ QL G +S QK +SNVVEKCL
Sbjct: 461 EIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLK 520
Query: 935 FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHL 994
+ R +I E++ L +M DP+GNYV+Q L+ L++ I++++
Sbjct: 521 LADDKHRARIIRELINYGR----LDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNI 576
Query: 995 NVLKKYTYGKHIVSRI 1010
+ L+ YGK ++S +
Sbjct: 577 SSLRTNPYGKKVLSAL 592
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 2/169 (1%)
Query: 690 FELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQ 749
F + H VE +TD++G +Q+ L + E+K + EI +A L D FGNYV+Q
Sbjct: 421 FLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQ 480
Query: 750 KFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL--DGSV 807
FE + ++ QL G+ LS+Q V++K L++ + +++ EL G +
Sbjct: 481 YVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRL 540
Query: 808 MKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVI 856
+ + D GN+VIQ ++ + ++ + + +L T+PYG +V+
Sbjct: 541 DQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVL 589
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 45/221 (20%)
Query: 795 QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCR 854
Q+ +AE G + DQ+G +Q+ + I+ I + + L P+G
Sbjct: 270 QKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNY 329
Query: 855 VIQRVLEHCDDANTQQIIM--------------------------------DEI------ 876
++Q++LE C++ QI+ +EI
Sbjct: 330 LVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISA 389
Query: 877 MQH-VCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTF 935
++H + +L ++ GN+V+Q L++ P+ + V ++ + V++KCL +
Sbjct: 390 LKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGY 449
Query: 936 GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLE 976
E++Q L++E+ + + +DPFGNYV+Q V E
Sbjct: 450 SEGEQKQHLVSEIASNA------LLLSQDPFGNYVLQYVFE 484
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 904 ERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMK 963
++ I + G+I +++ + +++ + + +++ NE++ E +M
Sbjct: 270 QKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISE------LMM 323
Query: 964 DPFGNYVVQKVLETC-DDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRIG 1022
DPFGNY+VQK+LE C +DQ ++++ S R +L K + H ++K++ T +R
Sbjct: 324 DPFGNYLVQKLLEVCNEDQRMQIVHSITR-KPGLLIKISCDMHGTRAVQKIVETAKREEE 382
Query: 1023 LSSSVSS 1029
+S +S+
Sbjct: 383 ISIIISA 389
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 181/354 (51%), Gaps = 36/354 (10%)
Query: 668 INMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRI 727
I R + ++LD++ + + DQ+G RF+Q++L+ ++ I
Sbjct: 550 IEESSRFADAVLDQY-------------IGSIHSLCKDQHGCRFLQKQLDILGSKAADAI 596
Query: 728 FPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKA 787
F E + LMTD FGNY+IQK E T QR L + H + +SL +G R +QK
Sbjct: 597 FEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKL 656
Query: 788 LEVVHVDQQTQMVAE-LDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVAL 846
+E + D++ Q+V + L ++ D NGNHVIQKC++ + + QFI + + +
Sbjct: 657 IECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 716
Query: 847 STHPYGCRVIQRVLEH-----CDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVL---- 897
+TH +GC V+QR L+H CD+ + D+++ V L D +GNYV+Q+++
Sbjct: 717 ATHRHGCCVLQRCLDHGTTEQCDN------LCDKLLALVDKLTLDPFGNYVVQYIITKEA 770
Query: 898 EHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEP 957
E K ++ L + + +S KF SNV+EK L E +L E+L + E
Sbjct: 771 EKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAIVSEPMIL--EILNNGGETG- 827
Query: 958 LQAMMKDPFGNYVVQKVLETCDDQSLELI--LSRIRVHLNV--LKKYTYGKHIV 1007
+Q+++ D +GNYV+Q L+ Q+ L LS I L V ++ +GK I+
Sbjct: 828 IQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRII 881
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 125/261 (47%), Gaps = 12/261 (4%)
Query: 766 QLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIE 825
Q G + L +GCR +QK L+++ + E ++ + D GN++IQK +E
Sbjct: 563 QYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLE 622
Query: 826 CIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQ 885
+ ++ + V +S +P+G R +Q+++E QI++D + + L++
Sbjct: 623 EVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSK 682
Query: 886 DQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLI 945
D GN+VIQ L+ KP + ++ + ++ + V+++CL G+ E+ L
Sbjct: 683 DLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLC 742
Query: 946 NEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNV-----LKKY 1000
+++L D+ + DPFGNYVVQ ++ +++ +I VHL L +
Sbjct: 743 DKLLALVDK------LTLDPFGNYVVQYIITKEAEKNKYDYTHKI-VHLLKPRAIELSIH 795
Query: 1001 TYGKHIVSRIEKLIATGERRI 1021
+G +++ +I K E I
Sbjct: 796 KFGSNVIEKILKTAIVSEPMI 816
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 41/244 (16%)
Query: 661 PWHLDAGINMEG-RLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAA 719
P ++ +N G R L++ KT++ + + + V+ S D G+ IQ+ L+
Sbjct: 638 PHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRL 697
Query: 720 TAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMY 779
E IF I + T G V+Q+ +HGT Q L +L V +L+L +
Sbjct: 698 KPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPF 757
Query: 780 GCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSF 839
G V+Q ++I K E D I+
Sbjct: 758 GNYVVQ--------------------------------YIITKEAEKNKYDYTHKIVHLL 785
Query: 840 YGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQH-----VCNLAQDQYGNYVIQ 894
+ + LS H +G VI+++L+ A + ++ EI+ + + +L D YGNYV+Q
Sbjct: 786 KPRAIELSIHKFGSNVIEKILK---TAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQ 842
Query: 895 HVLE 898
L+
Sbjct: 843 TALD 846
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 872 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 931
++D+ + + +L +DQ+G +Q L+ + + V + F + +++K
Sbjct: 560 VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQK 619
Query: 932 CLTFGSPEERQLLINEMLGSTDENEP-LQAMMKDPFGNYVVQKVLETCD-DQSLELILSR 989
L + E+R +L T + P + +P G +QK++E D+ ++++
Sbjct: 620 LLEEVTTEQRIVL-------TKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDS 672
Query: 990 IRVHLNVLKKYTYGKHIVSR 1009
+R + L K G H++ +
Sbjct: 673 LRPYTVQLSKDLNGNHVIQK 692
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 182/332 (54%), Gaps = 16/332 (4%)
Query: 685 NKTRSFELSDIVDH---VVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTD 741
NK S +L+ +VD V + DQ G R +Q+ ++ + IF E+I + L TD
Sbjct: 229 NKEDSLDLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTD 288
Query: 742 VFGNYVIQKFFEHGTESQRAQLASQLT---GHVLRLSLQMYGCRVIQKALEVVHVDQQTQ 798
FGNY+IQK E E QR Q+ +LT G ++++S+ YG RV+QK +E V +Q
Sbjct: 289 PFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQIS 348
Query: 799 MV-AELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQ 857
+V + L + + NGNHVI C++ + +FI+ + + ++T +GC V+Q
Sbjct: 349 LVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQ 408
Query: 858 RVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIV 917
R + + ++++ DEI ++ LAQD +GNY++Q+++E K V+ +L G V
Sbjct: 409 RCVSYSVGEQHEKLV-DEISRNSLLLAQDPFGNYLVQYIIE--KKVGGVNVLFELRGNYV 465
Query: 918 RMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLET 977
+++ QKF S+VVEKCL + PE R ++NE++ + +++DP+ NYV+Q L
Sbjct: 466 KLATQKFGSHVVEKCLRY-YPESRSQIVNELVSVLN----FGYLLQDPYANYVIQCALSK 520
Query: 978 CDDQSLELILSRIRVHLNVLKKYTYGKHIVSR 1009
++ ++R + N LK Y K I S+
Sbjct: 521 TKGFVRASLVEKVRRYEN-LKMTPYCKRIFSK 551
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
Query: 681 EFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMT 740
+F + F L +E +T ++G +Q+ + + E+ ++ EI ++ L
Sbjct: 376 KFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLLAQ 435
Query: 741 DVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMV 800
D FGNY++Q E + +L G+ ++L+ Q +G V++K L + + ++Q+V
Sbjct: 436 DPFGNYLVQYIIEKKVGG--VNVLFELRGNYVKLATQKFGSHVVEKCLR-YYPESRSQIV 492
Query: 801 AELDGSVMK---CVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVA---LSTHPYGCR 854
EL SV+ + D N+VIQ C F+ +S +V L PY R
Sbjct: 493 NEL-VSVLNFGYLLQDPYANYVIQ----CALSKTKGFVRASLVEKVRRYENLKMTPYCKR 547
Query: 855 VIQRVL 860
+ + L
Sbjct: 548 IFSKNL 553
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
Query: 914 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQK 973
G + M++ + +++K + G+ + ++ E++ + E + DPFGNY++QK
Sbjct: 244 GSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIE------LGTDPFGNYLIQK 297
Query: 974 VLETCDDQSLELILSRIRVHLNVLKKYT---YGKHIVSRIEKLIATGER 1019
++E C+++ IL R+ +L K + YG +V ++ + + T E+
Sbjct: 298 LIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQ 346
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 182/329 (55%), Gaps = 8/329 (2%)
Query: 690 FELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQ 749
++ + I+D ++ S DQ S F+QQKL+ ++ + K I II LM + FGN+++Q
Sbjct: 358 YDWNVIIDKII-VSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQ 416
Query: 750 KFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMK 809
+ FEHGT Q Q+ S + G++L+L+ +GC V+QKA++ V D + M+ EL ++
Sbjct: 417 RCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDV 476
Query: 810 CVHDQNGNHVIQKCIEC----IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD 865
+ HV QK E P + + + ++ G+ ++ G V+Q + E+C +
Sbjct: 477 TIMHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVE 536
Query: 866 ANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFA 925
+ ++ I +EI+ H+ +A+ Q+GN+V+QH++E+G+ + VI L + V S +FA
Sbjct: 537 KDKRECI-EEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFA 595
Query: 926 SNVVEKCLTFGSPEERQLLINEMLGSTDE--NEPLQAMMKDPFGNYVVQKVLETCDDQSL 983
S V+EK + G L + ++ + + +PL + D +GNY++Q++++
Sbjct: 596 SKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEK 655
Query: 984 ELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
L+++ I+ H+ L+ YG+ + +EK
Sbjct: 656 NLVITHIKKHMVSLRGSKYGQKVAYLVEK 684
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 34/221 (15%)
Query: 662 WHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATA 721
WH + + G L + E K + + +I+ H+ + Q+G+ +Q +E
Sbjct: 514 WH-EVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQG 572
Query: 722 EEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGC 781
E+ R+ ++ A D F + VI+K + G ++ + Q+T
Sbjct: 573 EDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITN------------ 620
Query: 782 RVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYG 841
VD+ Q + ++ DQ GN++IQ+ I+ +I+
Sbjct: 621 ---------ARVDRTRQPLIDI-------ASDQYGNYLIQQIIQLGQPAEKNLVITHIKK 664
Query: 842 QVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCN 882
+V+L YG Q+V + N+Q+ + ++ + CN
Sbjct: 665 HMVSLRGSKYG----QKVAYLVEKWNSQKQV-SSVINYNCN 700
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 164/317 (51%), Gaps = 21/317 (6%)
Query: 692 LSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKF 751
+ +I V + DQ G R +Q+ +E T E I II H L D FGNY++QK
Sbjct: 247 MVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKL 306
Query: 752 FEHGTESQRAQLASQLTGH---VLRLSLQMYGCRVIQKALEVVHVDQQTQMVAE-LDGSV 807
F+ E QR + S LT + ++R+ L YG RV+QK +E V QQ +V L
Sbjct: 307 FDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGF 366
Query: 808 MKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDAN 867
+ V D NGNHVIQ C++ + + +F++ + ++ H +GC V+Q + +
Sbjct: 367 LALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQ 426
Query: 868 TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASN 927
++++ EI ++ +L+QD +GNYV+Q++++ + ++ Q ++ QKF+S+
Sbjct: 427 RERLVA-EISRNSLHLSQDPFGNYVVQYLID--QQVSAVKLLVQFRMHYAELATQKFSSH 483
Query: 928 VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELIL 987
V+EKCL PE R ++ E+L + + +++DP+ NYV+Q L
Sbjct: 484 VIEKCLR-KYPESRAEIVRELLCVPN----FEYLLQDPYANYVIQTALSVTK-------- 530
Query: 988 SRIRVHLNVLKKYTYGK 1004
+R L V K Y YGK
Sbjct: 531 GPVRAKL-VAKVYRYGK 546
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 56/169 (33%)
Query: 866 ANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFA 925
+N + M EI V +A+DQ G V+Q ++E G HE ++ + +V +S
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSM---- 295
Query: 926 SNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLEL 985
DPFGNY+VQK+ + D++ L
Sbjct: 296 --------------------------------------DPFGNYIVQKLFDVSDEEQRTL 317
Query: 986 ILS--------RIRVHLNVLKKYTYGKHIVSRIEKLIATGERRIGLSSS 1026
I+S IR+ LN TYG +V ++ + + T +++I L S
Sbjct: 318 IVSVLTSNPRELIRICLN-----TYGTRVVQKMIETVKT-KQQIALVKS 360
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 153 bits (386), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 174/351 (49%), Gaps = 25/351 (7%)
Query: 670 MEGRLSSSLLDEFKTNKTRSFELSDIVD---HVVEFSTDQYGSRFIQQKLEAATAEEKTR 726
MEG +S DE K N +L +V+ V + DQ G R +Q+ +E T +
Sbjct: 187 MEGS-GASYPDEPKINGGLPLDLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKV 245
Query: 727 IFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTG---HVLRLSLQMYGCRV 783
IF EII H L D GNY++QK E QR + S LT ++++ L G RV
Sbjct: 246 IFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRV 305
Query: 784 IQKALEVVHVDQQTQMV-AELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQ 842
IQK ++ V QQ +V + L+ + V+D NG HV+Q C+E + + +F++ +
Sbjct: 306 IQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEY 365
Query: 843 VVALSTHPYGCRVIQRVLEHCDDANT----QQIIMDEIMQHVCNLAQDQYGNYVIQHVLE 898
L+TH YGC V+Q C NT + ++ EI + L+QD +GNYV+Q +++
Sbjct: 366 CAQLATHQYGCYVLQ-----CSLINTVGLQHERLVAEISRDSLRLSQDPFGNYVVQCLID 420
Query: 899 HGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPL 958
++ + ++ QKF+S+V+EKCL PE R ++ E+L +
Sbjct: 421 QQV--SSVNLLLPFRTHCIELATQKFSSHVIEKCLR-KYPESRAEIVRELLSYPN----F 473
Query: 959 QAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSR 1009
+ +++DP+ NYV+Q L ++ +++ L+ Y K I S+
Sbjct: 474 EQLLQDPYANYVIQTALSVTKGAVRARLVEKVK-RFGKLQSNPYCKKIFSK 523
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 900 GKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQ 959
G P + +++ ++ G + M++ + ++K + G+ + +++ E++ E
Sbjct: 203 GLPLDLVSMV-EIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVE----- 256
Query: 960 AMMKDPFGNYVVQKVLETCDDQSLELILS--------RIRVHLNVLKKYTYGKHIVSRIE 1011
+ DP GNY+VQK+L D++ +I+S I++ LN T G ++ ++
Sbjct: 257 -LSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLN-----TNGTRVIQKMI 310
Query: 1012 KLIATGERRIGLSSS 1026
K + T +++I L S
Sbjct: 311 KTVKT-KQQIALVKS 324
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 166/317 (52%), Gaps = 45/317 (14%)
Query: 700 VEFSTDQYGSRFIQQKLEAATAEEKTR--IFPEIIPHARTLMTDVFGNYVIQKFFEHGTE 757
++ +TDQ+G RF+Q+KLE + R ++ +I P L+ D FGNY++QK ++ T
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 758 SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG---------SVM 808
Q+ L + +V ++S+ YG R +QK ++ VD + Q+ + G V+
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDT--VDNEVQIDLIIKGFSQEFTSIEQVV 333
Query: 809 KCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQ--VVALSTHPYGCRVIQRVLEHCDDA 866
++D NGNHVIQKCI + FII + Q ++ +STH +GC V+Q++L C
Sbjct: 334 TLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCT-- 391
Query: 867 NTQQI--IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKP--HERTTVITQLAGQIVRMSQQ 922
QQI I +I+Q + L DQ+GNY+IQ +L+ + + + +L+ ++ ++S
Sbjct: 392 -LQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCL 450
Query: 923 KFASNVVEKCL-------------TFGSPEERQLL---------INEMLGSTD-ENEPLQ 959
KF+SNVVEK + G +R + +N +L + D L
Sbjct: 451 KFSSNVVEKFIKKLFRIITGFIVNNNGGASQRTAVASDDVINASMNILLTTIDIFTVNLN 510
Query: 960 AMMKDPFGNYVVQKVLE 976
+++D FGNY +Q +L+
Sbjct: 511 VLIRDNFGNYALQTLLD 527
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 123/279 (44%), Gaps = 43/279 (15%)
Query: 661 PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAAT 720
P+ LD ++ G L ++ T + ++ + I +V + S +QYG+R +Q+ ++
Sbjct: 251 PFFLDLILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVD 310
Query: 721 AEEKTRIFPE-------IIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLT--GHV 771
E + + + I TL+ D+ GN+VIQK + S+ + + ++
Sbjct: 311 NEVQIDLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNI 370
Query: 772 LRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDR 831
+ +S +GC V+QK L V + Q ++ ++ + ++DQ GN++IQ ++ D
Sbjct: 371 ITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDF 430
Query: 832 IQFIISSFY----GQVVALSTHPYGCRVIQRVLEHC-----------------------D 864
++++ + ++ LS + V+++ ++ D
Sbjct: 431 --YLLAELFNRLSNELCQLSCLKFSSNVVEKFIKKLFRIITGFIVNNNGGASQRTAVASD 488
Query: 865 DA--NTQQIIMDEIMQHVCN---LAQDQYGNYVIQHVLE 898
D + I++ I N L +D +GNY +Q +L+
Sbjct: 489 DVINASMNILLTTIDIFTVNLNVLIRDNFGNYALQTLLD 527
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Query: 844 VALSTHPYGCRVIQRVLEHCDDAN-TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKP 902
+ L+T +GCR +Q+ LE ++N + ++ ++I +L D +GNY++Q + ++
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 903 HERTTVITQLAGQIVRMSQQKFASNVVEKCL-TFGSPEERQLLINEMLGSTDENEPLQAM 961
++T +I + + ++S ++ + ++K + T + + L+I E + +
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTL 335
Query: 962 MKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIA 1015
+ D GN+V+QK + I+ I N++ T+ KH ++KL++
Sbjct: 336 INDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTH-KHGCCVLQKLLS 388
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 171/326 (52%), Gaps = 12/326 (3%)
Query: 695 IVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEH 754
+++ ++ F DQ S +QQ+L+ E+ + I+P + TLM + FGN++IQK FE+
Sbjct: 257 MIEQII-FQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEY 315
Query: 755 GTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQ 814
TE+Q + L HV LS+ +G V+QK+LE+ ++ EL + + +
Sbjct: 316 STEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQR 375
Query: 815 NGNHVIQKCIECIPQDRIQFIISSF----YGQVVALSTHPYGCRVIQRVLEHCDDANTQQ 870
+ HV QK E + + I F G+ + +S G V+Q + E+C + + ++
Sbjct: 376 HSCHVWQKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKD-KR 434
Query: 871 IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVE 930
+DEI+ ++ + Q+GN+VIQH++EHG ++ ++ L ++ S ++AS VVE
Sbjct: 435 TCLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVE 494
Query: 931 KCLTFGSPEERQLLINEMLGSTDENEP----LQAMMKDPFGNYVVQKVLETCDDQSLELI 986
+ L + E+ +T +NE LQ + + +GNY+VQ +L+ + L+
Sbjct: 495 RALRVCHVTFFDRYVKEI--TTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLM 552
Query: 987 LSRIRVHLNVLKKYTYGKHIVSRIEK 1012
++ H+ L+ + YG+ I + +EK
Sbjct: 553 AEHLKKHMVSLRGHKYGQRIAALVEK 578
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1
SV=1
Length = 632
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 200/436 (45%), Gaps = 86/436 (19%)
Query: 644 RNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVD--HVVE 701
RNSR S RS+ P W LD+ M RLS LS+++D +++
Sbjct: 156 RNSR--SFTRSNNVLPT-WSLDSNGEMRSRLS----------------LSEVLDSGDLMK 196
Query: 702 FSTDQYGSRFIQQKLEAA-TAEEKTRIFPEIIPHARTLM---TDVFGNYVIQKFF----- 752
F+ D+ G +F+++ ++ + T+ +K ++F ++I + T++FGNY++Q
Sbjct: 197 FAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLA 256
Query: 753 --EHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL--DGSVM 808
+ G ++ +L + ++ + + L + CRVIQ +L+ + + ++V L D ++
Sbjct: 257 TNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLI 316
Query: 809 KCVHDQNGNHVIQKCIECIPQDRIQFIISSFYG--QVVALSTHPYGCRVIQRVLEH--CD 864
DQN NHVIQK + IP +FI+ + + + YGCRV+Q ++E D
Sbjct: 317 AICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTAD 376
Query: 865 DANTQ-------------QIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHERTTVIT 910
N Q +M + LA ++Y NY+IQH++ + R +I
Sbjct: 377 SMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIE 436
Query: 911 Q-LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDE---------NEPLQA 960
+ L ++ +SQ+KFAS+VVEK E L+ EM+ + + L
Sbjct: 437 KCLMRNLLSLSQEKFASHVVEKAFLHAPLE----LLAEMMDEIFDGYIPHPDTGKDALDI 492
Query: 961 MMKDPFGNYVVQKVLETCDD--------------------QSLELILSRIRVHLNVLKKY 1000
MM FGNYVVQ +L C D L+ + SR+ + L ++
Sbjct: 493 MMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRF 552
Query: 1001 TYGKHIVSRIEKLIAT 1016
+ GK ++ + L +T
Sbjct: 553 SSGKKMIETLANLRST 568
>sp|Q9N5M6|FBF1_CAEEL Fem-3 mRNA-binding factor 1 OS=Caenorhabditis elegans GN=fbf-1 PE=1
SV=1
Length = 614
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 183/385 (47%), Gaps = 76/385 (19%)
Query: 644 RNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVD--HVVE 701
RNSR S RS+ P W LD+ M RLS LS+++D +++
Sbjct: 154 RNSR--SFTRSNNVLP-TWSLDSNGEMRSRLS----------------LSEVLDSGDLMK 194
Query: 702 FSTDQYGSRFIQQKLEAA-TAEEKTRIFPEIIPHARTLM---TDVFGNYVIQKF------ 751
F+ D+ G +F+++ ++ + T+ +K ++F ++I + T++FGNY +Q+
Sbjct: 195 FAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLT 254
Query: 752 -FEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL--DGSVM 808
++ ++ +L + ++ + + L + CRVIQ +L+ + + ++V L D ++
Sbjct: 255 TYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLI 314
Query: 809 KCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTH-------PYGCRVIQRVLE 861
DQN NHVIQK + IP +FI+ VA H YGCRV+Q ++E
Sbjct: 315 AICVDQNANHVIQKVVAVIPLKNWEFIVD-----FVATPEHLRQICFDKYGCRVVQTIIE 369
Query: 862 H--CDDANTQ-------------QIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHER 905
D N Q +M + LA ++Y NY+IQH++ + R
Sbjct: 370 KLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYR 429
Query: 906 TTVITQ-LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDE---------N 955
+I + L ++ +SQ+KFAS+VVEK +P E L+ EM+ +
Sbjct: 430 ECIIEKCLMRNLLSLSQEKFASHVVEKAF-LHAPME---LLAEMMDEIFDGYMPHPGTGK 485
Query: 956 EPLQAMMKDPFGNYVVQKVLETCDD 980
+ L MM FGNYVVQ +L C D
Sbjct: 486 DALDIMMFHQFGNYVVQCMLTICCD 510
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 142/316 (44%), Gaps = 15/316 (4%)
Query: 703 STDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQ 762
+TD+ S+ +++ + T E IF +I LM D FGN V++ + Q
Sbjct: 217 ATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIIL 276
Query: 763 LASQLTGHV---LRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG---SVMKCVHDQNG 816
+ +T H+ + + G IQ L +H Q+ +D ++ + N
Sbjct: 277 IVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNA 336
Query: 817 NHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVL--EHCDDANTQQIIMD 874
+VI C + + ++ ++ GC ++Q+ E + +Q ++
Sbjct: 337 KYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLIS 396
Query: 875 EIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLT 934
E+++H L + +GNYV+Q+V+E HE ++ +L +++ K+ S+VV+K L
Sbjct: 397 EVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLK 456
Query: 935 FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHL 994
+ + ++++ + G + ++ DPFGNYV+Q + +++ I ++
Sbjct: 457 LRGIDSKLIVVDLLRG-------IDTLLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNI 509
Query: 995 NVLKKYTYGKHIVSRI 1010
+++ +G I+ ++
Sbjct: 510 RLMRCNKFGNKILEKL 525
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 18/244 (7%)
Query: 782 RVIQKALE-VVHVDQQTQMVAELDGSVM---KCVHDQNGNHVIQKCIECIPQDRIQFII- 836
RV K LE + V + + DG ++ + + D GN V++ I ++I I+
Sbjct: 220 RVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVD 279
Query: 837 --SSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQI--IMDEIMQHVCNLAQDQYGNYV 892
+ + V + +P G IQ +L + QI IMD I L ++ YV
Sbjct: 280 VVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYV 339
Query: 893 IQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLT---FGSPEERQLLINEML 949
I + ++ ++ +++ + ++++C + E RQ LI+E++
Sbjct: 340 ILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVI 399
Query: 950 GSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSR 1009
E + + GNYVVQ V+E + +L+++++ + L + YG H+V +
Sbjct: 400 ------EHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQK 453
Query: 1010 IEKL 1013
+ KL
Sbjct: 454 LLKL 457
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 133/303 (43%), Gaps = 20/303 (6%)
Query: 691 ELSDIVDHVVEFSTDQYGSRFIQQKLEA---------ATAEEKTRIFPEIIPHARTLMTD 741
EL+D + S R KL T EE I + L +D
Sbjct: 725 ELTDFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSD 784
Query: 742 VFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA 801
GN V+QK F++ ++ + + ++ H+ ++ + G QK ++V + Q +++A
Sbjct: 785 HLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIA 844
Query: 802 E-LDGSVMKCVHDQNGNHVIQKCIEC-IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRV 859
+ L + DQ GN+V+Q C++ P + F+ + Q ++ YG R ++
Sbjct: 845 KHLQPYIPLLFADQFGNYVVQTCLKFGAPMN--DFVFEAILNQFWVIAQSRYGSRAVRAC 902
Query: 860 LEHCDDANTQQIIM-DEIMQHVCNLAQDQYGNYVIQHVLEH-GKPHERTTVITQLAGQIV 917
LE D Q++++ I + +LA + G ++ +++E+ PH + + IV
Sbjct: 903 LESPDVTEEQRVLVAAAITVYSVHLAMNGNGTLLLTYLVENMNYPHIPILLTRRFVQDIV 962
Query: 918 RMSQQKFASNVVEKCLTF--GSPEERQLLINEMLGSTDENEP---LQAMMKDPFGNYVVQ 972
R+ + A N + K ++ G L+++ +L + ++ P + + + +G +
Sbjct: 963 RVCTHRLAYNSLLKIISISQGDTACGDLVVDAILDTQNDLNPNSLEKILFEQTYGPSFIC 1022
Query: 973 KVL 975
K+L
Sbjct: 1023 KLL 1025
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 961 MMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIAT 1016
+ D GN VVQK+ + C D E++L RI HL + + G +I + +T
Sbjct: 781 LSSDHLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVAST 836
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 134/317 (42%), Gaps = 16/317 (5%)
Query: 702 FSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRA 761
F+ D+ S + + T E I+ +I LM D +G+ V+Q + Q
Sbjct: 208 FAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIV 267
Query: 762 QLASQLTGHVLR---LSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNH 818
QL +T + + + + G IQ L ++ + Q+ +D + NH
Sbjct: 268 QLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSNH 327
Query: 819 ---VIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVL--EHCDDANTQQIIM 873
VI C P + ++ ++ +GC ++Q + + +Q ++
Sbjct: 328 AIFVILACFRLFPL-HCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLI 386
Query: 874 DEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCL 933
E + + L + YGNYV+Q+++E + ++ QL G +++ K+ S+ V+K L
Sbjct: 387 MEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLL 446
Query: 934 TFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVH 993
+ R ++I+ + + ++ DPFGNYV+Q D ++ I +
Sbjct: 447 KLRWIDSRVIVIDLL-------REIDTLLLDPFGNYVIQTAWFVSKDDVRRMLRYHIERN 499
Query: 994 LNVLKKYTYGKHIVSRI 1010
+ +++ +G ++ ++
Sbjct: 500 IPMMRCNKFGNKVLEKL 516
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 108/277 (38%), Gaps = 55/277 (19%)
Query: 755 GTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVH-- 812
GT+ + + L G + L + YG V+Q + +Q Q+V + + + V+
Sbjct: 225 GTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIVQLVDIVTQQMFQFVNIC 284
Query: 813 -DQNGNHVIQKCIECI---PQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLE----HCD 864
D G + IQ + CI +D+I I+ + LS + VI HC
Sbjct: 285 IDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSNHAIFVILACFRLFPLHC- 343
Query: 865 DANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKF 924
+++++ I+Q+ +A DQ+G ++Q +
Sbjct: 344 -----RLLLELIVQNCHQIAIDQHGCCLLQLCFNKDR----------------------- 375
Query: 925 ASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLE 984
+ E RQ LI E + + + + +GNYVVQ ++E + ++
Sbjct: 376 ----------VPNLEIRQRLIMEAIANA------LRLCLNCYGNYVVQYIVELNNRYLID 419
Query: 985 LILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRI 1021
++ ++ + L + YG H V ++ KL R I
Sbjct: 420 ALVRQLIGNYAHLARNKYGSHAVQKLLKLRWIDSRVI 456
>sp|P47135|JSN1_YEAST Protein JSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JSN1 PE=1 SV=1
Length = 1091
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 120/268 (44%), Gaps = 18/268 (6%)
Query: 738 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT 797
L +D GN ++QK FEH ++ + + + + ++ + + G QK + + H +Q
Sbjct: 625 LSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQI 684
Query: 798 QMVAE-LDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVI 856
V + + ++DQ GN+VIQ C+ QFI S + + YG R +
Sbjct: 685 MQVTQGVKDYCTPLINDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQNRYGARAV 743
Query: 857 QRVLEHCDDANTQQ--IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHERTTVITQLA 913
+ LE D +Q ++ I+ + L+ + G ++ L+ P+ + + +L
Sbjct: 744 RACLEAHDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLT 803
Query: 914 GQIVRMSQQKFASNVVEKCLTF-GSPEERQLLINEMLG------STDENEPLQAMMKDPF 966
+IV + + AS + K L + G R+++++ + G S+ E + + + +
Sbjct: 804 KRIVELCGHRLASLTILKVLNYRGDDNARKIILDSLFGNVNAHDSSPPKELTKLLCETNY 863
Query: 967 GNYVVQKVLETCDDQSLELILSRIRVHL 994
G V KVL ++ L+ +R H+
Sbjct: 864 GPTFVHKVL------AMPLLEDDLRAHI 885
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 15/202 (7%)
Query: 693 SDIVDHVVEFSTDQY---------GSRFIQQKLEAA-TAEEKTRIFPEIIPHARTLMTDV 742
SDI+ ++ T +Y G+ Q+ + A T + ++ + + L+ D
Sbjct: 643 SDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQGVKDYCTPLINDQ 702
Query: 743 FGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALE---VVHVDQQTQM 799
FGNYVIQ + G + S + + + YG R ++ LE +V +Q +
Sbjct: 703 FGNYVIQCVLKFGFPWNQFIFES-IIANFWVIVQNRYGARAVRACLEAHDIVTPEQSIVL 761
Query: 800 VAELDGSVMKCVHDQNGNHVIQKCIEC-IPQDRIQFIISSFYGQVVALSTHPYGCRVIQR 858
A + + NG ++ ++ + +R + ++V L H I +
Sbjct: 762 SAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTKRIVELCGHRLASLTILK 821
Query: 859 VLEHCDDANTQQIIMDEIMQHV 880
VL + D N ++II+D + +V
Sbjct: 822 VLNYRGDDNARKIILDSLFGNV 843
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 872 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 931
++DE+ + L+ D GN ++Q + EH + ++ + + + M K + +K
Sbjct: 618 MLDELPE----LSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQK 673
Query: 932 CLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIR 991
+T + + + + G D PL + D FGNYV+Q VL+ + + I I
Sbjct: 674 MITMAHTPRQIMQVTQ--GVKDYCTPL---INDQFGNYVIQCVLKFGFPWN-QFIFESII 727
Query: 992 VHLNVLKKYTYGKHIVSRIEKL--IATGERRIGLSSSV 1027
+ V+ + YG V + I T E+ I LS+ +
Sbjct: 728 ANFWVIVQNRYGARAVRACLEAHDIVTPEQSIVLSAMI 765
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 24/285 (8%)
Query: 703 STDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQ 762
+ D S +Q + E +IF +I H LM D +G+ V +K E T+ Q +
Sbjct: 159 AKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITR 218
Query: 763 LASQLT---GHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSV-MKCVHDQNGNH 818
+ + +RL + +G IQ + + ++Q E V + D +
Sbjct: 219 VLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHR 278
Query: 819 VIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQ 878
VI C ++++ ++ GC ++++++ + ++ EI+
Sbjct: 279 VILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQ-SSRELRDPLIKEIIS 337
Query: 879 HVCNLAQDQYG----------NYVIQHVLEHGKPHERTTVITQ-LAGQIVRMSQQKFASN 927
L + YG NYV+Q++L K +E T+ +++ L G V++S K+ S+
Sbjct: 338 IAVRLCGNCYGTLTPKSLLVRNYVVQYLLR-LKDYEVTSALSKHLDGNYVQLSYDKYGSH 396
Query: 928 VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQ 972
VV+KCL R+ +I E+L D +++ DP+G+YV+Q
Sbjct: 397 VVQKCLESREFSSRR-IIAELLSDID------SLLVDPYGDYVIQ 434
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 113/285 (39%), Gaps = 51/285 (17%)
Query: 746 YVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMV----A 801
YVI K G + ++ L HV L L YG +V +K +E +Q T+++
Sbjct: 170 YVIAK----GLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVLDIVLE 225
Query: 802 ELDGSVMKCVHDQNGNHVIQKCIECI-PQDRIQFIISSFYGQVVALSTHPYGCRVIQRVL 860
E V CVH +G H IQ + + +++I + + + L+ RVI
Sbjct: 226 EPFEFVRLCVH-THGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCF 284
Query: 861 EHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMS 920
++T+ + ++ I+Q+ +A DQ G +++ ++ R +I ++ VR+
Sbjct: 285 NQFSPSHTRYL-LEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLC 343
Query: 921 QQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDD 980
+G+ + LL+ NYVVQ +L D
Sbjct: 344 GN-----------CYGTLTPKSLLVR---------------------NYVVQYLLRLKDY 371
Query: 981 QSLELILSRIRVHLN----VLKKYTYGKHIVSRIEKLIATGERRI 1021
+ + S + HL+ L YG H+V + + RRI
Sbjct: 372 E----VTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSRRI 412
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 110/253 (43%), Gaps = 30/253 (11%)
Query: 757 ESQRAQLASQLTGH---VLRLSLQMYGCR----VIQKALEVVHVDQQTQMVAELDGSVMK 809
ES ++ S LT L L+ YG + + +++ + H+ + +D +
Sbjct: 246 ESHLFKIGSALTTTKRIFLHLATNQYGSQALRILFRRSPSLDHL-----LFCAVDTNFFL 300
Query: 810 CVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQ 869
+ D+ G +I I + + + + + Y + L+ GC + VL+ +
Sbjct: 301 LMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEI-----R 355
Query: 870 QIIMDEIMQHVCN----LAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFA 925
I D I + V N L+ D YG +V+Q++L P T + +L G R++ ++
Sbjct: 356 GIYRDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQG 415
Query: 926 SNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLEL 985
S VVEKCL S R ++ E G+ E M D FGN+VVQ L ++ +
Sbjct: 416 SYVVEKCLK--SDFARDQVLEEFRGNAKE---WVRMTTDKFGNFVVQSALRVMKEKEMRP 470
Query: 986 IL----SRIRVHL 994
+L ++R H
Sbjct: 471 LLREFVEKLRPHF 483
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 140/314 (44%), Gaps = 31/314 (9%)
Query: 673 RLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAA--TAEEKTRIFPE 730
++++ +L +T ++R FE S + R I++ +++ T EE I
Sbjct: 146 KVATEILPPVETLRSRQFEASKL--------------REIRKNIDSGFYTQEEIEVIARS 191
Query: 731 IIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEV 790
++ L +D GN V+QKFFE+ ++ + + ++ ++ + + G QK ++V
Sbjct: 192 MLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNGTWAAQKIIDV 251
Query: 791 VHVDQQTQMVAE-LDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVA---- 845
++Q ++ + L DQ GN+V Q C+ R ++ ++F +V+A
Sbjct: 252 ASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCL------RFKYPKNTFLFEVMARHCC 305
Query: 846 -LSTHPYGCRVIQRVLEHCDDANTQQ-IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPH 903
+ +G R I+ LE+ + QQ +++ I+ + LA + G ++ +L++
Sbjct: 306 EIGQSRFGARAIRACLENENATFEQQALVVASIIINSHLLATNSNGMLLLTWLLDNSFFR 365
Query: 904 ERTTVIT-QLAGQIVRMSQQKFASNVVEKCLTFG-SPEERQLLINEMLGSTDENEPLQAM 961
R ++ LA + K AS ++ K + PE R LL+ + S +N +
Sbjct: 366 NRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEPESRNLLLKNLFFSEKDNVLTYIL 425
Query: 962 MKDPFGNYVVQKVL 975
G + KV+
Sbjct: 426 QDQAVGPSFIHKVI 439
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 935 FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHL 994
F + EE +++ ML E + D GN VVQK E C D E +L RI +L
Sbjct: 179 FYTQEEIEVIARSMLDDVAE------LSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYL 232
Query: 995 NVLKKYTYGKHIVSRIEKLIATGERRIGL 1023
+ + G +I +A+ E+++ L
Sbjct: 233 AAIGIHKNGTWAAQKIID-VASTEKQMDL 260
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 4/225 (1%)
Query: 752 FEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCV 811
+ GT A L + + + ++ G + +QK + + D + + +
Sbjct: 68 LDTGTLMWMASLMTSDCDYFMVITTNKNGSKTLQKLMGMSD-DMDVFFFEAIMRLFIHVM 126
Query: 812 HDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQI 871
D+ ++V + + QD+ + + L+ YGC + ++ DD +
Sbjct: 127 TDKYASYVTIQGMRVFQQDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQ 186
Query: 872 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 931
++D + + L+ D YGN+V+QHVL+ + +L G V +S +K+ S +VE+
Sbjct: 187 LLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVER 246
Query: 932 CLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLE 976
L G ++++ + T E L + + +GN+VV K LE
Sbjct: 247 LLEAGDVPMATVVLDLLACKT---EMLIRLARSEYGNFVVCKALE 288
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 12/209 (5%)
Query: 697 DHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGT 756
D+ + +T++ GS+ +Q KL + + F I+ +MTD + +YV +
Sbjct: 85 DYFMVITTNKNGSKTLQ-KLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQ 143
Query: 757 ESQRAQLASQLTGHVLRLSLQMYGC----RVIQKALEVVHVDQQTQMVAELDGSVMKCVH 812
+ +R + Q+ + L+ YGC +I + + DQ +VA + + +
Sbjct: 144 QDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVA---NNALLLSN 200
Query: 813 DQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII 872
D GN V+Q ++ + I G V LS YG +++R+LE D ++
Sbjct: 201 DAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLE-AGDVPMATVV 259
Query: 873 MDEI---MQHVCNLAQDQYGNYVIQHVLE 898
+D + + + LA+ +YGN+V+ LE
Sbjct: 260 LDLLACKTEMLIRLARSEYGNFVVCKALE 288
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 682 FKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKL-EAATAEEKTRIFPEIIPHARTLMT 740
F+ +K R I+ + + DQYG + + + + + ++ + +A L
Sbjct: 142 FQQDK-RELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSN 200
Query: 741 DVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT--- 797
D +GN+V+Q + +A +L G+ + LS + YG ++++ LE V T
Sbjct: 201 DAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVL 260
Query: 798 QMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISS--FYGQV 843
++A +++ + GN V+ K +E + I+++ FYG V
Sbjct: 261 DLLACKTEMLIRLARSEYGNFVVCKALELTNE-----ILTADLFYGLV 303
Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 844 VALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPH 903
+ ++T+ G + +Q+++ DD + + IM+ ++ D+Y +YV + +
Sbjct: 88 MVITTNKNGSKTLQKLMGMSDDMDV--FFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQD 145
Query: 904 ERTTVITQLAGQIVRMSQQKFASNVVEKCLT-FGSPEERQLLINEMLGSTDENEPLQAMM 962
+R + Q+ ++ ++ + + +T P R +++L N L +
Sbjct: 146 KRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYR----DQLLDIVANNALLLS-- 199
Query: 963 KDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRI 1010
D +GN+VVQ VL+ D + I ++ + L YG +IV R+
Sbjct: 200 NDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERL 247
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 66.6 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Query: 813 DQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII 872
D+ ++V + + QD+ + + + L+ YGC + +++ DD + +
Sbjct: 128 DKYASYVAIQGMRIFKQDKRELMYDHILRYALFLARDQYGCIALNEIIKELDDPYYRDEL 187
Query: 873 MDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKC 932
MD + + L+ D YGN+V+QHVL+ + +L G V +S +K+ S +VE+
Sbjct: 188 MDIVSNNALLLSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERL 247
Query: 933 LTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDD 980
L ++++ + T E L + + GN+VV K+LE +D
Sbjct: 248 LEVRDIPMATIVLDLLACKT---EMLIRLARSENGNFVVCKLLELTND 292
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 682 FKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKL-EAATAEEKTRIFPEIIPHARTLMT 740
FK +K R I+ + + + DQYG + + + E + + + +A L
Sbjct: 142 FKQDK-RELMYDHILRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNALLLSN 200
Query: 741 DVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT--- 797
D +GN+V+Q + +A +L G+ + LS + YG ++++ LEV + T
Sbjct: 201 DAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERLLEVRDIPMATIVL 260
Query: 798 QMVAELDGSVMKCVHDQNGNHVIQKCIE 825
++A +++ +NGN V+ K +E
Sbjct: 261 DLLACKTEMLIRLARSENGNFVVCKLLE 288
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 13/229 (5%)
Query: 677 SLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHAR 736
S+LD SF SD D+ + + ++ GS+ +Q KL + + F I+
Sbjct: 66 SVLDTGMLMWMASFLTSD-SDYFMVITRNKNGSKSLQ-KLMRMSDDMDVFFFVAIMRLFI 123
Query: 737 TLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGC----RVIQKALEVVH 792
+M D + +YV + + +R + + + L L+ YGC +I++ + +
Sbjct: 124 HVMIDKYASYVAIQGMRIFKQDKRELMYDHILRYALFLARDQYGCIALNEIIKELDDPYY 183
Query: 793 VDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYG 852
D+ +V+ + + +D GN V+Q ++ I G V LS YG
Sbjct: 184 RDELMDIVSN---NALLLSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYG 240
Query: 853 CRVIQRVLEHCDDANTQQIIMDEI---MQHVCNLAQDQYGNYVIQHVLE 898
+++R+LE D I++D + + + LA+ + GN+V+ +LE
Sbjct: 241 SYIVERLLE-VRDIPMATIVLDLLACKTEMLIRLARSENGNFVVCKLLE 288
>sp|Q8BKS9|K0020_MOUSE Pumilio domain-containing protein KIAA0020 OS=Mus musculus
GN=Kiaa0020 PE=2 SV=2
Length = 647
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 747 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGS 806
VIQ F ++G E QR Q +L G ++ LS Y +++K L Q +++ G
Sbjct: 181 VIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGH 240
Query: 807 VMKCVHDQNGNHVIQKCI--ECIPQDRIQFIISSFYGQVVAL---STHPYGCRVIQRVLE 861
V K + + +++ + I + R + YG L + HP + +VLE
Sbjct: 241 VRKMLRHSEASAIVEYAYNDKAILEQR-NMLTEELYGNTFQLYKSADHP----TLDKVLE 295
Query: 862 HCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEH---------GKPHERTTVITQL 912
++IMDE+ Q + +AQ + VI+H L H P R+ +I +
Sbjct: 296 L--QPAKLELIMDEMKQILTPMAQKE---AVIKHSLVHKVFLDFFTYAPPKPRSELIEAI 350
Query: 913 AGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEM 948
+V ++ + V CL G+P++R++++ M
Sbjct: 351 REAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTM 386
>sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 homolog OS=Rattus
norvegicus PE=2 SV=1
Length = 647
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 120/277 (43%), Gaps = 32/277 (11%)
Query: 747 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGS 806
VIQ ++G+E QR +L G ++ LS Y +++K L Q +++ G
Sbjct: 181 VIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGH 240
Query: 807 VMKCVHDQNGNHVIQKCI--ECIPQDRIQFIISSFYGQVVAL---STHPYGCRVIQRVLE 861
V K + + +++ + I + R + YG L + HP +++VLE
Sbjct: 241 VRKMLRHSEASAIVEYAYNDKAILEQR-NMLTEELYGNTFQLYKSADHP----TLEKVLE 295
Query: 862 HCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEH---------GKPHERTTVITQL 912
++I+DE+ Q + +AQ + VI+H L H P R+ +I +
Sbjct: 296 --VQPGKLELILDEMKQILTPMAQKE---AVIKHSLVHKVFLDFFTYAPPKLRSELIEAI 350
Query: 913 AGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQ 972
+V ++ + V CL G+P++R++++ M ++ + + + V+
Sbjct: 351 REAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTM------KTYVEKIANGQYSHLVLL 404
Query: 973 KVLETCDDQSL--ELILSRIRVHLNVLKKYTYGKHIV 1007
+ DD L ++I+S + L + YG+ ++
Sbjct: 405 AAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVL 441
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 700 VEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQ 759
+ F+ D +R IQ ++ + E++ F E+ L + +++KF +G++ Q
Sbjct: 172 IAFAHD--STRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQ 229
Query: 760 RAQLASQLTGHVLRLSLQMYGCRVIQKAL-EVVHVDQQTQMVAELDGSVMKCVHDQNGNH 818
A++ GHV ++ +++ A + ++Q+ + EL G+ + ++ +H
Sbjct: 230 IAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLY--KSADH 287
Query: 819 -VIQKCIECIPQDRIQFIISSF------YGQVVALSTHPYGCRVIQRVLEHCDDANTQQI 871
++K +E P +++ I+ Q A+ H +V + ++
Sbjct: 288 PTLEKVLEVQP-GKLELILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEL 346
Query: 872 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 931
I + I + V LA G V H L HG P +R ++ + + +++ +++ V+
Sbjct: 347 I-EAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKIANGQYSHLVL-- 403
Query: 932 CLTFGSPEE----RQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVL 975
F ++ +Q++I+E++ S L +++ D +G V+ +L
Sbjct: 404 LAAFDCIDDTKLVKQIIISEVISS------LPSIVNDKYGRKVLLYLL 445
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 796 QTQMVAELDGSVMKCVHDQNGNHVIQKCI-ECIPQDRIQFIISSFYGQVVALSTHPYGCR 854
+++++ + +V+ H +G V C+ P+DR + I+ + V ++ Y
Sbjct: 343 RSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDR-KVIVKTMKTYVEKIANGQYSHL 401
Query: 855 VIQRVLEHCDDAN-TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQL 912
V+ + DD +QII+ E++ + ++ D+YG V+ ++L P I QL
Sbjct: 402 VLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVLLYLLSPRAPAHLVPEIIQL 460
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 10/219 (4%)
Query: 738 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT 797
L +D GN VIQK FE+ + R + + ++ + + G V QK +++ + +Q
Sbjct: 584 LSSDYLGNTVIQKLFENSSNIIRDIMLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQI 643
Query: 798 QMVAE-LDGSVMKCVHDQNGNHVIQKCIEC-IPQDRIQFIISSFYGQVVALSTHPYGCRV 855
+V + +DQ GN+VIQ ++ P + FI S + + YG R
Sbjct: 644 NLVTSGVSDYCTPLFNDQFGNYVIQGILKFGFPWN--SFIFESVLSHFWTIVQNRYGSRA 701
Query: 856 IQRVLEHCDDANTQ---QIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHERTTVITQ 911
++ LE D TQ I I+ LA D G +I +L+ P++ + +
Sbjct: 702 VRACLE-ADSIITQCQLLTITSLIIVLSPYLATDTNGTLLITWLLDTCTLPNKNLILCDK 760
Query: 912 LAGQ-IVRMSQQKFASNVVEKCLTFGSPEERQLLINEML 949
L + +V++ K S V K L EE L N+++
Sbjct: 761 LVNKNLVKLCCHKLGSLTVLKILNLRGGEEEALSKNKII 799
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 19/213 (8%)
Query: 788 LEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALS 847
L +V +DQ ++ + D GN VIQK E ++ + ++
Sbjct: 573 LAIVMLDQLPELSS-----------DYLGNTVIQKLFENSSNIIRDIMLRKCNKYLTSMG 621
Query: 848 THPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTT 907
H G V Q++++ + ++ + + L DQ+GNYVIQ +L+ G P +
Sbjct: 622 VHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGFPWN-SF 680
Query: 908 VITQLAGQIVRMSQQKFASNVVEKCLTFGS--PEERQLLINEMLGSTDENEPLQAMMKDP 965
+ + + Q ++ S V CL S + + L I ++ + D
Sbjct: 681 IFESVLSHFWTIVQNRYGSRAVRACLEADSIITQCQLLTITSLIIVLSP-----YLATDT 735
Query: 966 FGNYVVQKVLETCDDQSLELILSRIRVHLNVLK 998
G ++ +L+TC + LIL V+ N++K
Sbjct: 736 NGTLLITWLLDTCTLPNKNLILCDKLVNKNLVK 768
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 108/243 (44%), Gaps = 19/243 (7%)
Query: 697 DHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGT 756
D+ + T ++GSR +Q KL + + I+ + TD + +YV +
Sbjct: 82 DYFMSIVTTKFGSRRVQ-KLLGKSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFD 140
Query: 757 ESQRAQLASQLTGHVLRLSLQMYGC----RVIQKALEVVHVDQQTQMVAELDGSVMKCVH 812
+ + L ++ H L L+ +GC +I A + + DQ ++VA + ++ +
Sbjct: 141 KVMKKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVAS---NALRLSN 197
Query: 813 DQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII 872
D +GN V+Q + I I + YGQ + LS YG +++++LE + +
Sbjct: 198 DASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVE 257
Query: 873 M-----DEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTV--ITQLAGQIVRMSQQKFA 925
+ D +M+ LA++++GN+V+ L K + Q +R+ ++
Sbjct: 258 LLGCDGDRLMR----LARNEFGNFVVVKALRFTKMSRMDLFWGLVQKLMPFIRLLRRSHG 313
Query: 926 SNV 928
SN+
Sbjct: 314 SNI 316
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 111/252 (44%), Gaps = 8/252 (3%)
Query: 738 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTG---HVLRLSLQMYGCRVIQKALEVVHVD 794
LMTD G ++ + +++ ++AS LT + + + +G R +QK L D
Sbjct: 48 LMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD-D 106
Query: 795 QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCR 854
A + + D+ ++V + + + + + + L+ +GC
Sbjct: 107 VDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCI 166
Query: 855 VIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAG 914
+ ++ DD + +++ + + L+ D GN+V+QHVL + L G
Sbjct: 167 ALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYG 226
Query: 915 QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKV 974
Q + +S +K+ S +VEK L E +++ E+LG + + L + ++ FGN+VV K
Sbjct: 227 QCIELSFKKYGSYIVEKLLE--VEESMVVVVVELLGC--DGDRLMRLARNEFGNFVVVKA 282
Query: 975 LETCDDQSLELI 986
L ++L
Sbjct: 283 LRFTKMSRMDLF 294
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 112/252 (44%), Gaps = 8/252 (3%)
Query: 738 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTG---HVLRLSLQMYGCRVIQKALEVVHVD 794
LMTD G ++ +++ ++AS LT + + + +G R +QK L D
Sbjct: 48 LMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD-D 106
Query: 795 QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCR 854
A + + D+ ++V + + + + + + L+ +GC
Sbjct: 107 VDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCI 166
Query: 855 VIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAG 914
+ ++ DD + +++ ++ + L+ D GN+V+QHVL + L G
Sbjct: 167 ALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYG 226
Query: 915 QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKV 974
Q + +S +K+ S +VEK L E +++ E+LG + + L + ++ FGN+VV K
Sbjct: 227 QCIELSFKKYGSYIVEKLLE--VEESMVVVVVELLGC--DGDRLMRLARNEFGNFVVVKA 282
Query: 975 LETCDDQSLELI 986
L + ++L
Sbjct: 283 LRFTKEMRMDLF 294
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 46/225 (20%)
Query: 683 KTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDV 742
K++ +F + I+ + +TD+Y S + + K ++ I+ HA L D
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 743 FGNYVIQKFFEHGTE-SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA 801
G + + R QL + + LRLS
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVVSNALRLS-------------------------- 196
Query: 802 ELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLE 861
+D +GN V+Q + I I + YGQ + LS YG +++++LE
Sbjct: 197 ----------NDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLE 246
Query: 862 HCDDANTQQIIM-----DEIMQHVCNLAQDQYGNYVIQHVLEHGK 901
+ + + D +M+ LA++++GN+V+ L K
Sbjct: 247 VEESMVVVVVELLGCDGDRLMR----LARNEFGNFVVVKALRFTK 287
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 117/257 (45%), Gaps = 24/257 (9%)
Query: 763 LASQLTG---HVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHV 819
+AS LT + L ++ M G + IQK L D A + + + D+ ++V
Sbjct: 83 MASLLTSDPDYFLMIARNMNGSKRIQKLLGKTD-DVDALFAAAILRRFLHIITDKYASYV 141
Query: 820 IQKCIECIPQDRIQFIISSFYGQVVALSTH----PYGCRVIQRVLEHCDDANTQQIIMDE 875
+++ + + + + + Y ++ ++H +G + ++ DA ++ D
Sbjct: 142 VRRGMTVFDKKKKK----AMYEHILHYASHIARDKHGNLALNDIIT---DAYRNKLF-DV 193
Query: 876 IMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTF 935
I L+ D YGN+VIQ VL+ + ++ L G V +S QK+ S VV+ L
Sbjct: 194 IAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFVDLSFQKYGSYVVDVLLE- 252
Query: 936 GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVH-- 993
+ E +++ E++ E + L + ++ +GN++V K L + + L VH
Sbjct: 253 -TKESMVVVVEELMEC--EGDMLMRLARNEYGNFLVCKALRVTQKEMVRTDLFWGLVHKL 309
Query: 994 --LNVLKKYTYGKHIVS 1008
+ L +++ GK+I S
Sbjct: 310 KPFHNLLRWSRGKNIAS 326
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 697 DHVVEFST----DQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFF 752
+H++ +++ D++G+ + + T + ++F I A L D +GN+VIQ+
Sbjct: 159 EHILHYASHIARDKHGNLALN---DIITDAYRNKLFDVIAHKALVLSNDAYGNFVIQRVL 215
Query: 753 EHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALE-----VVHVDQQTQMVAELDGS- 806
+ + + L GH + LS Q YG V+ LE VV V++ + E +G
Sbjct: 216 KLNDLRSKNNIVVSLRGHFVDLSFQKYGSYVVDVLLETKESMVVVVEE----LMECEGDM 271
Query: 807 VMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQV 843
+M+ ++ GN ++ K + ++ ++ F+G V
Sbjct: 272 LMRLARNEYGNFLVCKALRVTQKEMVR--TDLFWGLV 306
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 46/215 (21%)
Query: 683 KTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDV 742
KT+ + + I+ + TD+Y S +++ + ++K ++ I+ +A + D
Sbjct: 113 KTDDVDALFAAAILRRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHILHYASHIARDK 172
Query: 743 FGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAE 802
GN + T++ R +L + L LS YG VIQ+ L++ + + +V
Sbjct: 173 HGNLALNDII---TDAYRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVS 229
Query: 803 LDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEH 862
L G V LS YG V+ +LE
Sbjct: 230 LRG------------------------------------HFVDLSFQKYGSYVVDVLLE- 252
Query: 863 CDDANTQQIIMDEIMQ----HVCNLAQDQYGNYVI 893
+ ++++E+M+ + LA+++YGN+++
Sbjct: 253 --TKESMVVVVEELMECEGDMLMRLARNEYGNFLV 285
>sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1
Length = 641
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 42/288 (14%)
Query: 699 VVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTES 758
V E + SR +Q ++ + EK +F E+ P L ++ + + IQK + ++
Sbjct: 123 VPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGASKQ 182
Query: 759 QRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL---DGSVMKCVHDQN 815
Q A S L GHV L ++G V++ A + Q+ +++AEL + + K + N
Sbjct: 183 QLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYSTELQLFKGLTTSN 242
Query: 816 GNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDE 875
V+ II+ Q A++ H +IQ +LE + I+D
Sbjct: 243 EKTVVD-------------IIAKLGLQKGAVNRHMTA--IIQPILE--------KGIVDH 279
Query: 876 IMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTF 935
+ H +I+++ K + ++RM + S + +
Sbjct: 280 TITH----------KLLIEYLTIADKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKH 329
Query: 936 GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSL 983
GS +ER+ +I M E ++ M D FG+ V+ + DD L
Sbjct: 330 GSAKERKKIIKAM------KEHVKKMAFDQFGSMVLACIFSIVDDTKL 371
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 48/94 (51%)
Query: 681 EFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMT 740
+F + + +++ + ++++Y FIQ+ L+ A+ ++ + H L+
Sbjct: 141 KFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLR 200
Query: 741 DVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRL 774
VFG+ V++ + G+ +Q+ +L ++L L+L
Sbjct: 201 HVFGSLVVEHAYHLGSAAQKQELLAELYSTELQL 234
>sp|Q04373|PUF6_YEAST Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1
Length = 656
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 852 GCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQ 911
R++Q ++++ +QI+ D + LA YG Y++ +L +G R T+I +
Sbjct: 170 ASRIVQTLVKYSSKDRREQIV-DALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINE 228
Query: 912 LAGQIVRMSQQKFASNVVEKCLT-FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYV 970
L G + ++ + + + VVE + + E+RQ +I E GS A+ ++ +
Sbjct: 229 LHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSE------YAVFRETHKDLT 282
Query: 971 VQKVLET 977
++KV E+
Sbjct: 283 IEKVCES 289
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/243 (18%), Positives = 101/243 (41%), Gaps = 14/243 (5%)
Query: 747 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGS 806
++Q ++ ++ +R Q+ L G L+ YG ++ K L + ++ EL GS
Sbjct: 173 IVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGS 232
Query: 807 VMKCVHDQNGNHVIQKC-IECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD 865
+ K + + G +V++ + ++ Q +I F+G A+ + I++V E
Sbjct: 233 LRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKDLTIEKVCE--SS 290
Query: 866 ANTQQIIMDEIMQHVCNLAQDQYGNYVIQHV-----LEHGKPHERTTVITQLAGQIVRMS 920
+ II ++ + + + I H ++ E + +I L Q +
Sbjct: 291 IEKRNIIARNLIGTITASVEKGSTGFQILHAAMREYVKIANEKEISEMIELLHEQFAELV 350
Query: 921 QQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDD 980
S+V + + +ER+L++ + ++ ++K+ +GN V +L DD
Sbjct: 351 HTPEGSDVACTLVARANAKERKLILKALKNHAEK------LIKNEYGNIVFITILNCVDD 404
Query: 981 QSL 983
L
Sbjct: 405 TVL 407
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 810 CVHD----QNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD 865
C+ D + + ++Q ++ +DR + I+ + G+ L+T YG ++ ++L H
Sbjct: 160 CISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLL-HYGS 218
Query: 866 ANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHE-RTTVITQLAGQIVRMSQQKF 924
+++Q I++E+ + L + + G YV++ + HE R +I + G + ++
Sbjct: 219 RSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETH 278
Query: 925 ASNVVEKCLTFGSPEERQLLINEMLGS 951
+EK S E+R ++ ++G+
Sbjct: 279 KDLTIEKVCE-SSIEKRNIIARNLIGT 304
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 16/206 (7%)
Query: 702 FSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFE-HGTESQR 760
+T YG + + L + + I E+ R LM G YV++ F + T QR
Sbjct: 200 LATSAYGKYLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQR 259
Query: 761 AQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHD-----QN 815
Q+ + G + + + I+K E ++++ + L G++ V Q
Sbjct: 260 QQMIKEFWGSEYAVFRETHKDLTIEKVCE-SSIEKRNIIARNLIGTITASVEKGSTGFQI 318
Query: 816 GNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYG----CRVIQRVLEHCDDANTQQI 871
+ +++ ++ + I +I + Q L P G C ++ R +A +++
Sbjct: 319 LHAAMREYVKIANEKEISEMIELLHEQFAELVHTPEGSDVACTLVARA-----NAKERKL 373
Query: 872 IMDEIMQHVCNLAQDQYGNYVIQHVL 897
I+ + H L +++YGN V +L
Sbjct: 374 ILKALKNHAEKLIKNEYGNIVFITIL 399
>sp|Q15397|K0020_HUMAN Pumilio domain-containing protein KIAA0020 OS=Homo sapiens
GN=KIAA0020 PE=1 SV=3
Length = 648
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 700 VEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQ 759
+ F+ D +R IQ ++ E++ + F E+ L + +++KF +G++ Q
Sbjct: 173 IAFAHD--STRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQ 230
Query: 760 RAQLASQLTGHVLRLSLQMYGCRVIQKAL-EVVHVDQQTQMVAELDGSVMKCVHDQNGNH 818
A++ GHV ++ +++ A + ++Q+ + EL G+ + ++ +
Sbjct: 231 IAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQ-LYKSADHR 289
Query: 819 VIQKCIECIPQ------DRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII 872
+ K +E P+ D ++ I++ Q A+ H +V + ++I
Sbjct: 290 TLDKVLEVQPEKLELIMDEMKQILTPM-AQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMI 348
Query: 873 MDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVV 929
+ I + V LA G V H L HG P +R ++ + + +++ +++ V+
Sbjct: 349 -EAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVL 404
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 863 CDDANTQQIIMD--EIMQ-HVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRM 919
CD +++ D +++Q + +A VIQ +++G +R +L +V +
Sbjct: 150 CDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVEL 209
Query: 920 SQQKFASNVVEKCLTFGSPEERQLLINEMLG 950
S+ K++ N+V+K L +GS + +I G
Sbjct: 210 SKAKYSRNIVKKFLMYGSKPQIAEIIRSFKG 240
>sp|O61345|PEN_DROME Protein penguin OS=Drosophila melanogaster GN=pen PE=2 SV=1
Length = 737
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/331 (19%), Positives = 129/331 (38%), Gaps = 43/331 (12%)
Query: 690 FELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQ 749
+++ ++ D + + +R IQ L+ A+ + I +++P + + + +Q
Sbjct: 163 YKVLNVGDTISKVVKAHDTARVIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQ 222
Query: 750 KFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMK 809
+ ++G + +A+L L GH++RL+ G ++ + +Q+ M E G + +
Sbjct: 223 RMLKYGAPATKAKLVDSLYGHIVRLAGHSIGSGLLDSMYQSATPNQRIYMRQEFYGDLYR 282
Query: 810 CVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQ 869
D N +S Y + + G ++ L+H AN Q
Sbjct: 283 KAKDSNVK-----------------TLSDTYKEATNMKASILGS--VKANLDHV--ANKQ 321
Query: 870 QIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVV 929
++D + H L +Y ++ E + E T +T A + M K S
Sbjct: 322 --LVDSALVHAVML---EY----LRACDEDEEKLEET--VTAFAALVPHMLSTKEGSEAA 370
Query: 930 EKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQ--SLELIL 987
C +P+ R+ +I + E L + G+ + +L DD + + I
Sbjct: 371 VICFYKSTPKNRRAIIKNI------KEHLLKIANHEHGHVFLISLLNALDDTKATKKAIY 424
Query: 988 SRIRVHLNVLKKYTYGKHIVSRIEKLIATGE 1018
+ L L YG+ + I+ L+A G+
Sbjct: 425 DHLHGDLKALMSSPYGRRV---IQWLVAPGD 452
>sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1
Length = 642
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/324 (18%), Positives = 130/324 (40%), Gaps = 51/324 (15%)
Query: 686 KTRSFELSDIV-DHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFG 744
KT EL D++ +V + SR +Q ++ + +++ I E+ L +G
Sbjct: 152 KTIIAELFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYG 211
Query: 745 NYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKAL-EVVHVDQQTQMVAEL 803
Y+ K F++GT + + ++ G+V+++ V++ A E ++ QQ ++ E
Sbjct: 212 KYLAIKIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEF 271
Query: 804 DGSVMKCVHDQNGNHVIQKCIECIPQDR---IQFIISSFYGQVVALST-HPYGCRVIQRV 859
G + D+ + I K + P+ R +Q + + G + S R +
Sbjct: 272 YGPEFQVFKDRTQDIHIDKLLIDHPEKRPSIMQNLWKTIEGSIAKGSIGFTMVHRAMLEF 331
Query: 860 LEHCD-----------------------------------DANTQQIIMDEIMQHVCNLA 884
+ H D +A +++++ + ++ A
Sbjct: 332 INHADSNEAKELLNLTKELIYEFVHTRDGSQVAMKLFALANAKDRKVMLKSLRPYLIETA 391
Query: 885 QDQYGNYVIQHVLEHGKPHERTTVITQ--LAGQIVRMSQQKFASNVVEKCLT------FG 936
+D YG+ V+ L+ T + Q G+++++S KFA ++ L +
Sbjct: 392 KDSYGHLVVVAALDCTDDTIMTGKLLQAEFEGELLKLSADKFARRILLYVLVGWEDARYF 451
Query: 937 SPEERQLL--INEMLGSTDENEPL 958
S E R+LL ++ + T + +P+
Sbjct: 452 SKENRELLRSLDSLKAKTSKKDPI 475
Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 872 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 931
+ D I +V L + V+Q ++ G +R T+ +LAG V + + + + K
Sbjct: 158 LFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAIK 217
Query: 932 CLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQ 972
+G+P+ +++++ EM G+ + M++ YVV+
Sbjct: 218 IFKYGTPKMKEVILGEMYGN------VVKMIRHREAAYVVE 252
>sp|Q7VKZ9|LPTD_HAEDU LPS-assembly protein LptD OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=lptD PE=3 SV=1
Length = 779
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 41/176 (23%)
Query: 569 FGSSLGD-SDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTF 627
F SS G+ +DG H +L Q Q+ + + GK F + +PYR+ Q N +
Sbjct: 332 FDSSYGNVTDGYALQHFKLGYYQP--QYNLSISGKDFHTFDSFDNVKPYRVLPQIDFNYY 389
Query: 628 ANPVLPSVGSGSFPNERNSRFTSMMR-----SSMGGPMPWHLDAGINMEGRLSSSLLDEF 682
+ L + R S F + R SM +H + IN+
Sbjct: 390 QDQFLK--------DSRFSFFAQIARFENDSKSMPNAWRFHAEPIINIP----------- 430
Query: 683 KTNKTRSFELSDIVDHV--VEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHAR 736
V+H + F T Y S + QQK E TAEE + IIP +
Sbjct: 431 ------------FVNHYGSLNFETKLYASHYQQQKGENQTAEEVKKQLTRIIPQVK 474
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,999,092
Number of Sequences: 539616
Number of extensions: 16302076
Number of successful extensions: 48003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 46895
Number of HSP's gapped (non-prelim): 419
length of query: 1029
length of database: 191,569,459
effective HSP length: 128
effective length of query: 901
effective length of database: 122,498,611
effective search space: 110371248511
effective search space used: 110371248511
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)