Query 001686
Match_columns 1029
No_of_seqs 303 out of 1674
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 15:46:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001686.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_985-989//hhsearch_pdb/001686hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 1.0 1 1 534.2 25.2 347 674-1021 3-350 (351)
2 3k49_A MRNA-binding protein PU 1.0 1 1 530.0 24.0 345 674-1019 3-366 (369)
3 3k62_A FEM-3 mRNA-binding fact 1.0 1 1 510.0 25.1 344 658-1017 4-406 (412)
4 3v71_A PUF (pumilio/FBF) domai 1.0 1 1 491.4 22.4 324 689-1012 10-380 (382)
5 3bwt_A Protein PUF4; pumilio, 1.0 1 1 474.1 17.7 320 688-1011 4-332 (333)
6 3k49_A MRNA-binding protein PU 1.0 1 1 345.4 16.3 301 670-976 37-359 (369)
7 3gvo_A Pumilio 2, pumilio homo 1.0 1 1 338.4 21.2 301 671-978 33-343 (351)
8 3bwt_A Protein PUF4; pumilio, 1.0 1 1 338.3 19.1 274 728-1010 8-291 (333)
9 3k62_A FEM-3 mRNA-binding fact 1.0 1 1 326.4 19.0 266 670-936 75-403 (412)
10 3v71_A PUF (pumilio/FBF) domai 1.0 1 1 306.9 20.2 301 670-976 26-380 (382)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=1.00 E-value=1 Score=534.18 Aligned_cols=347 Identities=55% Similarity=0.943 Sum_probs=331.6
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHH
Q ss_conf 25689986211656531086568999998509885899999741099999999999986869874337555620004520
Q 001686 674 LSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFE 753 (1029)
Q Consensus 674 ~~s~LLeef~s~eek~l~L~EI~GkiveLA~Dq~GSRvIQklLe~~S~Eqr~~IfeEI~~~lleLmtD~fGshVIQKLLe 753 (1029)
.||.|+|+|+.++.+.+.++++.|+++++|+||+|||+||++|+++++++++.||+++.+++.+||+|+||||||||+|+
T Consensus 3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle 82 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 82 (351)
T ss_dssp CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 84278999757898996899987499999269863699999971398999999999998858989718166299999996
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 36999999999997566988430233415676775505857899999931023989860346875789988309935798
Q 001686 754 HGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQ 833 (1029)
Q Consensus 754 ~~s~eqr~~Li~~Lkg~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL~g~i~~Li~DqnGShVIQklLE~~~~e~~q 833 (1029)
+++++++..|++.+.+++.+|+.|+|||||||++++.+..+++..|++||.+++..|++|++||||+|+||++++++.+.
T Consensus 83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 09999999999998766998860788689999999967899999999985316999987101327999999768999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99985321053510486640468788630699878999999999999997209784099999973089401999999999
Q 001686 834 FIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 913 (1029)
Q Consensus 834 ~Iie~l~g~lvsLA~hkyGs~VIQklLe~c~d~~~~~~IleELl~~L~~LA~DqyGNyVVQ~ILe~~~pk~r~~Ii~~L~ 913 (1029)
+|++.+.+++..|++|+|||+|+|++|++|. +..+..|++++.+++..|++|+|||||||++|+++.++.+..|++.+.
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999998889999807574899999999789-999999999986549961899438799999999675344999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99975226743789999999408999999999999449999-84699854098657999999830994679999999999
Q 001686 914 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDE-NEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRV 992 (1029)
Q Consensus 914 g~iv~LS~~K~GSrVVEklL~~as~k~Rk~IIkeLlg~~d~-~e~L~~La~DqyGnyVIQklL~t~ddt~rk~Ii~eLk~ 992 (1029)
++++.|+++|+||+|||+||++++++.|+.|+++++...++ .+.+..|++|+|||||||++|+.+++.+|+.|++.|++
T Consensus 242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~ 321 (351)
T 3gvo_A 242 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 321 (351)
T ss_dssp TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 88999854938899999999759999999999998612678872798806996267999999985899999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 79988517884279999999997085210
Q 001686 993 HLNVLKKYTYGKHIVSRIEKLIATGERRI 1021 (1029)
Q Consensus 993 ~L~eL~~~~yGk~Il~kIEkl~~~g~~r~ 1021 (1029)
++..|++++||++|++++|+++......+
T Consensus 322 ~~~~L~~~~~g~~i~~kl~~~~~~~~~~~ 350 (351)
T 3gvo_A 322 HITTLRKYTYGKHILAKLEKYYLKNSPDL 350 (351)
T ss_dssp GHHHHTTSTTTHHHHHHHHHHTC------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99998369846999999999875507667
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=1.00 E-value=1 Score=530.00 Aligned_cols=345 Identities=45% Similarity=0.741 Sum_probs=328.4
Q ss_pred HHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEH
Q ss_conf 25689986211656-----5310865689999985098858999997410999999999999868698743375556200
Q 001686 674 LSSSLLDEFKTNKT-----RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVI 748 (1029)
Q Consensus 674 ~~s~LLeef~s~ee-----k~l~L~EI~GkiveLA~Dq~GSRvIQklLe~~S~Eqr~~IfeEI~~~lleLmtD~fGshVI 748 (1029)
+||.|+|+|+++.. +.+.++++.|+++++|+||+|||+||++|++++++++..||+|+.+++.+||+|+||||||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 75254899867998655444603999998999997287230999998662999999999999999899986485115589
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 04520369999999999975669884302334156767755058578999999310239898603468757899883099
Q 001686 749 QKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIP 828 (1029)
Q Consensus 749 QKLLe~~s~eqr~~Li~~Lkg~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL~g~i~~Li~DqnGShVIQklLE~~~ 828 (1029)
||+|++++++++..|++.+.+++..|+.|+|||||+|++++.++.+++..++.||.+++..|++|++||||||+||++++
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 99997399999999999986208988517554899999997589999999999999999999517445549999997199
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCH----
Q ss_conf 3579899985321053510486640468788630699878999999999999997209784099999973089401----
Q 001686 829 QDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHE---- 904 (1029)
Q Consensus 829 ~e~~q~Iie~l~g~lvsLA~hkyGs~VIQklLe~c~d~~~~~~IleELl~~L~~LA~DqyGNyVVQ~ILe~~~pk~---- 904 (1029)
++.+.+|++.+.+++..|++|++||+|+|+||+++. +..+..+++++.+++..|++|+|||||||++|++++++.
T Consensus 163 ~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~-~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS-SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999999999999678766829999998689-9999999999999999996597299999999953890322357
Q ss_pred --HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-------CCCHHHHHHHCCCCHHHHHHHHH
Q ss_conf --999999999999752267437899999994089999999999994499-------99846998540986579999998
Q 001686 905 --RTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGST-------DENEPLQAMMKDPFGNYVVQKVL 975 (1029)
Q Consensus 905 --r~~Ii~~L~g~iv~LS~~K~GSrVVEklL~~as~k~Rk~IIkeLlg~~-------d~~e~L~~La~DqyGnyVIQklL 975 (1029)
+..|++.+.++++.|+++|+||+|||+||.+++++.|+.|+++++... ++++++..|++|+|||||||++|
T Consensus 242 ~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l 321 (369)
T 3k49_A 242 DIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLV 321 (369)
T ss_dssp HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 67999999999999999861575699999998399999999999985556432112356527999984730589999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCC
Q ss_conf 309946799999999997998851-78842799999999970852
Q 001686 976 ETCDDQSLELILSRIRVHLNVLKK-YTYGKHIVSRIEKLIATGER 1019 (1029)
Q Consensus 976 ~t~ddt~rk~Ii~eLk~~L~eL~~-~~yGk~Il~kIEkl~~~g~~ 1019 (1029)
+++++.+++.|+++|++++.+|+. ++||+++++++||++...|-
T Consensus 322 ~~~~~~~~~~l~~~i~p~l~~L~~~~~~G~~~~~~~e~~~~~~~~ 366 (369)
T 3k49_A 322 NVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAALVEN 366 (369)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHC-
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 967888999999999999999851466761599999999998754
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=1.00 E-value=1 Score=509.99 Aligned_cols=344 Identities=29% Similarity=0.536 Sum_probs=311.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHH
Q ss_conf 99987667578731122568998621165653108656--899999850988589999974109-999999999998686
Q 001686 658 GPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDI--VDHVVEFSTDQYGSRFIQQKLEAA-TAEEKTRIFPEIIPH 734 (1029)
Q Consensus 658 ~~~~w~~d~~~~~~~~~~s~LLeef~s~eek~l~L~EI--~GkiveLA~Dq~GSRvIQklLe~~-S~Eqr~~IfeEI~~~ 734 (1029)
..|.|.+|+.+++..+ +.|.++ +|+++++|+||+||||||++|+++ ++++++.||+|+.++
T Consensus 4 ~~~~w~~~~~~~~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~ 67 (412)
T 3k62_A 4 VLPTWSLDSNGEMRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGR 67 (412)
T ss_dssp -CCGGGBCTTSSBCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSS
T ss_pred CCCCCHHCCCCCCCCC----------------CCHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 6864233026999987----------------849999748771999649756899999865089989999999999722
Q ss_pred ---HHHHHCCCCCCEEHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHH-
Q ss_conf ---98743375556200045203699-------9999999997566988430233415676775505857899999931-
Q 001686 735 ---ARTLMTDVFGNYVIQKFFEHGTE-------SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL- 803 (1029)
Q Consensus 735 ---lleLmtD~fGshVIQKLLe~~s~-------eqr~~Li~~Lkg~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL- 803 (1029)
+.+||+|+||||||||+|++|++ +++..|++.+.+++..|+.|+|||||||++|+.++.+++..++.||
T Consensus 68 ~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~ 147 (412)
T 3k62_A 68 KDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 147 (412)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 56799998372988999999984891123243999999999999999999817452499999999578889999999970
Q ss_pred -CHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHCCCCCCHHHHHHHHHHCCCH-----------HHH
Q ss_conf -0239898603468757899883099357989998532--10535104866404687886306998-----------789
Q 001686 804 -DGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFY--GQVVALSTHPYGCRVIQRVLEHCDDA-----------NTQ 869 (1029)
Q Consensus 804 -~g~i~~Li~DqnGShVIQklLE~~~~e~~q~Iie~l~--g~lvsLA~hkyGs~VIQklLe~c~d~-----------~~~ 869 (1029)
.+++..|++|++||||||+||++++++.+++|++.+. +++.++++|+|||+|||+||++|.++ +++
T Consensus 148 ~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr 227 (412)
T 3k62_A 148 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLR 227 (412)
T ss_dssp CSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHH
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 46018999719643699999999699999999999871413699985596359999999996674112200100038899
Q ss_pred H----HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCH-HHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 9----9999999999997209784099999973089401-999999-999999752267437899999994089999999
Q 001686 870 Q----IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHE-RTTVIT-QLAGQIVRMSQQKFASNVVEKCLTFGSPEERQL 943 (1029)
Q Consensus 870 ~----~IleELl~~L~~LA~DqyGNyVVQ~ILe~~~pk~-r~~Ii~-~L~g~iv~LS~~K~GSrVVEklL~~as~k~Rk~ 943 (1029)
. .++++|..++..|++|+|||||||++|+++.++. +..|++ .+.++++.|+++||||+|||+||++++++.|+.
T Consensus 228 ~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ 307 (412)
T 3k62_A 228 ERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAE 307 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999999999864842029999999629905579999999999889999604076899999998599999999
Q ss_pred HHHHHHCC----C-CCCHHHHHHHCCCCHHHHHHHHHHCCCHH--------------------HHHHHHHHHHHHHHHHH
Q ss_conf 99999449----9-99846998540986579999998309946--------------------79999999999799885
Q 001686 944 LINEMLGS----T-DENEPLQAMMKDPFGNYVVQKVLETCDDQ--------------------SLELILSRIRVHLNVLK 998 (1029)
Q Consensus 944 IIkeLlg~----~-d~~e~L~~La~DqyGnyVIQklL~t~ddt--------------------~rk~Ii~eLk~~L~eL~ 998 (1029)
|+++|+.. + ..++.|..|++|+|||||||++|++++|. .++.|+.+|+++...|+
T Consensus 308 ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~ 387 (412)
T 3k62_A 308 MMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLS 387 (412)
T ss_dssp HHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999850357765451699998669936899999999754633220110122113445467899999999988788744
Q ss_pred HCCCCHHHHHHHHHHHHHC
Q ss_conf 1788427999999999708
Q 001686 999 KYTYGKHIVSRIEKLIATG 1017 (1029)
Q Consensus 999 ~~~yGk~Il~kIEkl~~~g 1017 (1029)
+++|||+|+++++++....
T Consensus 388 ~~~~Gk~i~~~l~~~~~~~ 406 (412)
T 3k62_A 388 RFSSGKKMIETLANLRSTH 406 (412)
T ss_dssp TSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHCCC
T ss_conf 6997128999999752337
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=491.36 Aligned_cols=324 Identities=25% Similarity=0.501 Sum_probs=294.2
Q ss_pred CCCHHHH--HHHHHHHHHCCCCCHHHHHHHHCCCHHH-HHHHHHHHH---HHHHHHHCCCCCCEEHHHHHHCCCHHHHHH
Q ss_conf 3108656--8999998509885899999741099999-999999986---869874337555620004520369999999
Q 001686 689 SFELSDI--VDHVVEFSTDQYGSRFIQQKLEAATAEE-KTRIFPEII---PHARTLMTDVFGNYVIQKFFEHGTESQRAQ 762 (1029)
Q Consensus 689 ~l~L~EI--~GkiveLA~Dq~GSRvIQklLe~~S~Eq-r~~IfeEI~---~~lleLmtD~fGshVIQKLLe~~s~eqr~~ 762 (1029)
.+.|.++ .|+++++|+||+||||||++|+.+++++ +..||+++. +++.+||+|+||||||||+|++|+++++..
T Consensus 10 ~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~ 89 (382)
T 3v71_A 10 FISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRE 89 (382)
T ss_dssp -CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHCCCEEHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 17499884088770030487102999987043886899999999998627789999628288799999998599999999
Q ss_pred HHHH-HHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCH-HHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9999-756698843023341567677550585789999993102-39898603468757899883099357989998532
Q 001686 763 LASQ-LTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG-SVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFY 840 (1029)
Q Consensus 763 Li~~-Lkg~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL~g-~i~~Li~DqnGShVIQklLE~~~~e~~q~Iie~l~ 840 (1029)
|+.. +.+++..|+.|+|||||+|+++++++.+++..++.+|.+ ++..|++|++||||||+||++++++.+++|++.+.
T Consensus 90 li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~ 169 (382)
T 3v71_A 90 LLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLS 169 (382)
T ss_dssp HHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99997311398877375056999999997899999999998541266999618561519999999789999999999995
Q ss_pred --HHHHHHCCCCCCHHHHHHHHHHCCCHHH----------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC--CHHH
Q ss_conf --1053510486640468788630699878----------9999999999999972097840999999730894--0199
Q 001686 841 --GQVVALSTHPYGCRVIQRVLEHCDDANT----------QQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKP--HERT 906 (1029)
Q Consensus 841 --g~lvsLA~hkyGs~VIQklLe~c~d~~~----------~~~IleELl~~L~~LA~DqyGNyVVQ~ILe~~~p--k~r~ 906 (1029)
+++..+++|+|||+|+|+||++|.++.+ ...++++|..++..|++|+|||||||++|+++.+ +.+.
T Consensus 170 ~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~ 249 (382)
T 3v71_A 170 SGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRD 249 (382)
T ss_dssp STTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHH
T ss_pred CCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 45311768269511599999999688764211455789999999999999899986475201999999844997478899
Q ss_pred HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC-----CCCCHHHHHHHCCCCHHHHHHHHHHCCCH
Q ss_conf 99999-9999975226743789999999408999999999999449-----99984699854098657999999830994
Q 001686 907 TVITQ-LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGS-----TDENEPLQAMMKDPFGNYVVQKVLETCDD 980 (1029)
Q Consensus 907 ~Ii~~-L~g~iv~LS~~K~GSrVVEklL~~as~k~Rk~IIkeLlg~-----~d~~e~L~~La~DqyGnyVIQklL~t~dd 980 (1029)
.|+.. |.++++.|+++||||+|||+||++++++.|+.|+++|+.. ..+++.|..|++|+|||||||++|+++++
T Consensus 250 ~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~ 329 (382)
T 3v71_A 250 TIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTA 329 (382)
T ss_dssp HHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999657067599999998699999999999998213455556525899987799713999999997434
Q ss_pred HH-------------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 67-------------------999999999979988517884279999999
Q 001686 981 QS-------------------LELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012 (1029)
Q Consensus 981 t~-------------------rk~Ii~eLk~~L~eL~~~~yGk~Il~kIEk 1012 (1029)
.. ++.|+++|++|+..|+.++||++|+++++|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~ 380 (382)
T 3v71_A 330 ALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMR 380 (382)
T ss_dssp HCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 023410012305677654689999999999889876118863899999873
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=1.00 E-value=1 Score=474.10 Aligned_cols=320 Identities=30% Similarity=0.495 Sum_probs=295.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCHHHHHHHHHHH
Q ss_conf 53108656899999850988589999974109999999999998686987433755562000452036999999999997
Q 001686 688 RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQL 767 (1029)
Q Consensus 688 k~l~L~EI~GkiveLA~Dq~GSRvIQklLe~~S~Eqr~~IfeEI~~~lleLmtD~fGshVIQKLLe~~s~eqr~~Li~~L 767 (1029)
+...+++++|+++++|+||+|||+||++|++++++++..||+|+.+++.+||+|+||||||||+|++++++++..|++.+
T Consensus 4 ~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~ 83 (333)
T 3bwt_A 4 ADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKIS 83 (333)
T ss_dssp TTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 54869999979999965847139999987629999999999999988999955853279999999629999999999998
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCHH-HHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 566988430233415676775505857-8999999310239898603468757899883099357989998532105351
Q 001686 768 TGHVLRLSLQMYGCRVIQKALEVVHVD-QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVAL 846 (1029)
Q Consensus 768 kg~I~~Ls~d~yGSrVIQklLe~ls~e-q~~~Ll~EL~g~i~~Li~DqnGShVIQklLE~~~~e~~q~Iie~l~g~lvsL 846 (1029)
.+++..|+.|+|||||+|++++.+..+ ++..++++|.+++..|++|++||||+|+||++++++.+++|++.+.+++..|
T Consensus 84 ~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 84 SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp GGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 74899998555552899988986381999999999999989999419762689999999779988999999999989999
Q ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHCCC
Q ss_conf 048664046878863069987899999999999999720978409999997308940----1999999999999752267
Q 001686 847 STHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPH----ERTTVITQLAGQIVRMSQQ 922 (1029)
Q Consensus 847 A~hkyGs~VIQklLe~c~d~~~~~~IleELl~~L~~LA~DqyGNyVVQ~ILe~~~pk----~r~~Ii~~L~g~iv~LS~~ 922 (1029)
+.|++||+|+|+|++++. +..+..+++++.+++..|+.|+|||||||++|+.++++ .+..|++.+.+++..|+++
T Consensus 164 ~~~~~Gs~Vvq~~l~~~~-~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~ 242 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHGT-TEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 242 (333)
T ss_dssp HTSTTHHHHHHHHHHHCC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 658361799999998299-9999999999999899980598289999999983872002036999999999999999706
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHH---HHHHHHHHHHHHH-HHHH
Q ss_conf 43789999999408999999999999449999846998540986579999998309946---7999999999979-9885
Q 001686 923 KFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQ---SLELILSRIRVHL-NVLK 998 (1029)
Q Consensus 923 K~GSrVVEklL~~as~k~Rk~IIkeLlg~~d~~e~L~~La~DqyGnyVIQklL~t~ddt---~rk~Ii~eLk~~L-~eL~ 998 (1029)
|+||+|+|+||+.++ .++.++.+++.... .+.+..|+.|+|||||||++|+.++++ .++.|+++|+|++ .+|+
T Consensus 243 k~gs~Vvek~l~~~~--~~~~ii~ell~~~~-~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr 319 (333)
T 3bwt_A 243 KFGSNVIEKILKTAI--VSEPMILEILNNGG-ETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIR 319 (333)
T ss_dssp TTHHHHHHHHHTSHH--HHHHHHHHHHHTTH-HHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGG
T ss_pred CHHHHHHHHHHCCCC--HHHHHHHHHHHCCC-CHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHC
T ss_conf 277999999980620--16999999982468-567999871880789999999966686599999999999874556546
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 1788427999999
Q 001686 999 KYTYGKHIVSRIE 1011 (1029)
Q Consensus 999 ~~~yGk~Il~kIE 1011 (1029)
.++||+||+.+++
T Consensus 320 ~~~~G~~i~~~l~ 332 (333)
T 3bwt_A 320 NTPHGKRIIGMLH 332 (333)
T ss_dssp GSHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHC
T ss_conf 8997788999864
No 6
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=1.00 E-value=1 Score=345.40 Aligned_cols=301 Identities=22% Similarity=0.352 Sum_probs=269.8
Q ss_pred CCHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 31122568998621---165653108656899999850988589999974109999999999998686987433755562
Q 001686 670 MEGRLSSSLLDEFK---TNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNY 746 (1029)
Q Consensus 670 ~~~~~~s~LLeef~---s~eek~l~L~EI~GkiveLA~Dq~GSRvIQklLe~~S~Eqr~~IfeEI~~~lleLmtD~fGsh 746 (1029)
..+..+++++|.+. +.+++...++++.++++++++|++|+++||++|++++++++..|++++.+++..|++|+||++
T Consensus 37 ~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~r 116 (369)
T 3k49_A 37 CKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACR 116 (369)
T ss_dssp HTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHH
T ss_pred HCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 72872309999986629999999999999998999864851155899999739999999999998620898851755489
Q ss_pred EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 00045203699999999999756698843023341567677550585789999993102398986034687578998830
Q 001686 747 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIEC 826 (1029)
Q Consensus 747 VIQKLLe~~s~eqr~~Li~~Lkg~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL~g~i~~Li~DqnGShVIQklLE~ 826 (1029)
|||+++++++++++..|+.++.+++..|+.|++|+||||++++.++.+.+..|++.+.+++..+..+++|++|+|+||++
T Consensus 117 VlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~ 196 (369)
T 3k49_A 117 VIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEF 196 (369)
T ss_dssp HHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999975899999999999999999995174455499999971999999999999999999996787668299999986
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
Q ss_conf 99357989998532105351048664046878863069987-----8999999999999997209784099999973089
Q 001686 827 IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDAN-----TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK 901 (1029)
Q Consensus 827 ~~~e~~q~Iie~l~g~lvsLA~hkyGs~VIQklLe~c~d~~-----~~~~IleELl~~L~~LA~DqyGNyVVQ~ILe~~~ 901 (1029)
++++.+..|++.+..++..|+.++||++|||++|+++.++. .+..|++.+.+++..|+.++||+.||+++|+.++
T Consensus 197 ~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~ 276 (369)
T 3k49_A 197 GSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGS 276 (369)
T ss_dssp SCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999999659729999999995389032235767999999999999999861575699999998399
Q ss_pred CCHHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHC-CCCH
Q ss_conf 4019999999999-------------9975226743789999999408999999999999449999846998540-9865
Q 001686 902 PHERTTVITQLAG-------------QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMK-DPFG 967 (1029)
Q Consensus 902 pk~r~~Ii~~L~g-------------~iv~LS~~K~GSrVVEklL~~as~k~Rk~IIkeLlg~~d~~e~L~~La~-DqyG 967 (1029)
++.+..|++.+.. .+..|+.++||..||+++|..+++..|+.|++++. +++..|.+ ++||
T Consensus 277 ~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~~~i~------p~l~~L~~~~~~G 350 (369)
T 3k49_A 277 KNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIR------AYLDKLNKSNSLG 350 (369)
T ss_dssp HHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHHCC--C
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHCCCCCC
T ss_conf 9999999999855564321123565279999847305899999999678889999999999------9999985146676
Q ss_pred HHHHHHHHH
Q ss_conf 799999983
Q 001686 968 NYVVQKVLE 976 (1029)
Q Consensus 968 nyVIQklL~ 976 (1029)
++++.++-.
T Consensus 351 ~~~~~~~e~ 359 (369)
T 3k49_A 351 NRHLASVEK 359 (369)
T ss_dssp CCCCHHHHH
T ss_pred CHHHHHHHH
T ss_conf 159999999
No 7
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=1.00 E-value=1 Score=338.43 Aligned_cols=301 Identities=24% Similarity=0.399 Sum_probs=277.4
Q ss_pred CHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 112256899862---11656531086568999998509885899999741099999999999986869874337555620
Q 001686 671 EGRLSSSLLDEF---KTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYV 747 (1029)
Q Consensus 671 ~~~~~s~LLeef---~s~eek~l~L~EI~GkiveLA~Dq~GSRvIQklLe~~S~Eqr~~IfeEI~~~lleLmtD~fGshV 747 (1029)
.+...++++|.. .+++++...+.++.++++++++|++|++++|++|++++++++..|++++.+++.+|+.|++|++|
T Consensus 33 ~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rv 112 (351)
T 3gvo_A 33 QDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRV 112 (351)
T ss_dssp TSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHH
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 69863699999971398999999999998858989718166299999996099999999999987669988607886899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 00452036999999999997566988430233415676775505857899999931023989860346875789988309
Q 001686 748 IQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECI 827 (1029)
Q Consensus 748 IQKLLe~~s~eqr~~Li~~Lkg~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL~g~i~~Li~DqnGShVIQklLE~~ 827 (1029)
||++|++++.+++..|++++.+++..|+.|++|+||+|+++++++++++..+++.+.+++..+..+++|++|+|+||+.+
T Consensus 113 vQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~ 192 (351)
T 3gvo_A 113 IQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHC 192 (351)
T ss_dssp HHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 99999967899999999985316999987101327999999768999999999999888999980757489999999978
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
Q ss_conf 93579899985321053510486640468788630699878999999999999997209784099999973089401999
Q 001686 828 PQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTT 907 (1029)
Q Consensus 828 ~~e~~q~Iie~l~g~lvsLA~hkyGs~VIQklLe~c~d~~~~~~IleELl~~L~~LA~DqyGNyVVQ~ILe~~~pk~r~~ 907 (1029)
+++.+..|++.+.+++..|+.|+||++|||++|+++. +..+..|++.+.+++..|+.|+||++||+++|++++++.+..
T Consensus 193 ~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~-~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ 271 (351)
T 3gvo_A 193 TAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERAL 271 (351)
T ss_dssp CHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999999986549961899438799999999675-344999999999889998549388999999997599999999
Q ss_pred HHHHHHH-------HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 9999999-------9975226743789999999408999999999999449999846998540986579999998309
Q 001686 908 VITQLAG-------QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETC 978 (1029)
Q Consensus 908 Ii~~L~g-------~iv~LS~~K~GSrVVEklL~~as~k~Rk~IIkeLlg~~d~~e~L~~La~DqyGnyVIQklL~t~ 978 (1029)
|++.+.. .+..|+.++||..||+++|..++++.|+.|++.+. +++..|.+++||.+|+.++-...
T Consensus 272 ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~------~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 272 LIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIR------PHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp HHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHG------GGHHHHTTSTTTHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999861267887279880699626799999998589999999999999------99999836984699999999987
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=1.00 E-value=1 Score=338.26 Aligned_cols=274 Identities=22% Similarity=0.325 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHH
Q ss_conf 99986869874337555620004520369999999999975669884302334156767755058578999999310239
Q 001686 728 FPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSV 807 (1029)
Q Consensus 728 feEI~~~lleLmtD~fGshVIQKLLe~~s~eqr~~Li~~Lkg~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL~g~i 807 (1029)
++++.+++.+|++|++|+++||++|++++++++..|++++.+++.+|+.|+||++|+|++++.++.+++..+++++.+++
T Consensus 8 l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~ 87 (333)
T 3bwt_A 8 LDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHF 87 (333)
T ss_dssp GGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999799999658471399999876299999999999999889999558532799999996299999999999987489
Q ss_pred HHHHHCCCCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 898603468757899883099-3579899985321053510486640468788630699878999999999999997209
Q 001686 808 MKCVHDQNGNHVIQKCIECIP-QDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQD 886 (1029)
Q Consensus 808 ~~Li~DqnGShVIQklLE~~~-~e~~q~Iie~l~g~lvsLA~hkyGs~VIQklLe~c~d~~~~~~IleELl~~L~~LA~D 886 (1029)
..++.|++|++|+|++|++.+ ++.+..|++.+.+++..|+.|++|++|||+||+++. ++.++.|++.+.+++..|+.|
T Consensus 88 ~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~-~~~~~~i~~~l~~~~~~l~~~ 166 (333)
T 3bwt_A 88 VEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLK-PENFQFIFDAISDSCIDIATH 166 (333)
T ss_dssp HHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHHSHHHHHTS
T ss_pred HHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCC
T ss_conf 9998555552899988986381999999999999989999419762689999999779-988999999999989999658
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHH----HHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 784099999973089401999999999999752267437899999994089999----9999999944999984699854
Q 001686 887 QYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEE----RQLLINEMLGSTDENEPLQAMM 962 (1029)
Q Consensus 887 qyGNyVVQ~ILe~~~pk~r~~Ii~~L~g~iv~LS~~K~GSrVVEklL~~as~k~----Rk~IIkeLlg~~d~~e~L~~La 962 (1029)
+||++|||+++++++++++..|++.+.+++..|+.+++|.+||+++|+.++++. ++.|++.+. +++..|+
T Consensus 167 ~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~------~~~~~Ls 240 (333)
T 3bwt_A 167 RHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLK------PRAIELS 240 (333)
T ss_dssp TTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHG------GGHHHHH
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH------HHHHHHH
T ss_conf 3617999999982999999999999999899980598289999999983872002036999999999------9999997
Q ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHHHCCCCHHHHHHH
Q ss_conf 09865799999983099467999999999-----9799885178842799999
Q 001686 963 KDPFGNYVVQKVLETCDDQSLELILSRIR-----VHLNVLKKYTYGKHIVSRI 1010 (1029)
Q Consensus 963 ~DqyGnyVIQklL~t~ddt~rk~Ii~eLk-----~~L~eL~~~~yGk~Il~kI 1010 (1029)
.++||++||+++|.+.+ .++.++.++. +++..|+.+.||.+|+.++
T Consensus 241 ~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~ 291 (333)
T 3bwt_A 241 IHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTA 291 (333)
T ss_dssp TSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCC--HHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 06277999999980620--1699999998246856799987188078999999
No 9
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=1.00 E-value=1 Score=326.39 Aligned_cols=266 Identities=17% Similarity=0.250 Sum_probs=226.6
Q ss_pred CCHHHHHHHHHHHH---CC-------CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH--HHHHHH
Q ss_conf 31122568998621---16-------5653108656899999850988589999974109999999999998--686987
Q 001686 670 MEGRLSSSLLDEFK---TN-------KTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEI--IPHART 737 (1029)
Q Consensus 670 ~~~~~~s~LLeef~---s~-------eek~l~L~EI~GkiveLA~Dq~GSRvIQklLe~~S~Eqr~~IfeEI--~~~lle 737 (1029)
+.+.|++.+++.+. +. +.+...++.+.|++++++.|++|||+||++|++++.+++..|+.|+ .+++..
T Consensus 75 ~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~ 154 (412)
T 3k62_A 75 STNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIA 154 (412)
T ss_dssp HTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHH
T ss_pred HHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHH
T ss_conf 83729889999999848911232439999999999999999998174524999999995788899999999704601899
Q ss_pred HHCCCCCCEEHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHCCCCCHHHHHHHHHCCH------------HHHH----HH
Q ss_conf 4337555620004520369999999999975--6698843023341567677550585------------7899----99
Q 001686 738 LMTDVFGNYVIQKFFEHGTESQRAQLASQLT--GHVLRLSLQMYGCRVIQKALEVVHV------------DQQT----QM 799 (1029)
Q Consensus 738 LmtD~fGshVIQKLLe~~s~eqr~~Li~~Lk--g~I~~Ls~d~yGSrVIQklLe~ls~------------eq~~----~L 799 (1029)
|++|++|||||||+|++++++++..|++.+. +++..++.|+|||+|||++|+.+.. +++. .+
T Consensus 155 L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L 234 (412)
T 3k62_A 155 ICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRL 234 (412)
T ss_dssp HHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97196436999999996999999999998714136999855963599999999966741122001000388999999999
Q ss_pred HHHHCHHHHHHHHCCCCCHHHHHHHHHCCHHH-HHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99310239898603468757899883099357-989998-5321053510486640468788630699878999999999
Q 001686 800 VAELDGSVMKCVHDQNGNHVIQKCIECIPQDR-IQFIIS-SFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIM 877 (1029)
Q Consensus 800 l~EL~g~i~~Li~DqnGShVIQklLE~~~~e~-~q~Iie-~l~g~lvsLA~hkyGs~VIQklLe~c~d~~~~~~IleELl 877 (1029)
+.++..+...|+.|+|||||||.+|+.+.++. +..|++ .+.++++.||+|||||+||++||+++. +..+..|++||+
T Consensus 235 ~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~-~~~r~~ii~ei~ 313 (412)
T 3k62_A 235 MTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAP-LELLAEMMDEIF 313 (412)
T ss_dssp HHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_conf 9999999999864842029999999629905579999999999889999604076899999998599-999999999998
Q ss_pred H-----------HHHHHHCCCCCCHHHHHHHHCCCCC--------------------HHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9-----------9999720978409999997308940--------------------19999999999997522674378
Q 001686 878 Q-----------HVCNLAQDQYGNYVIQHVLEHGKPH--------------------ERTTVITQLAGQIVRMSQQKFAS 926 (1029)
Q Consensus 878 ~-----------~L~~LA~DqyGNyVVQ~ILe~~~pk--------------------~r~~Ii~~L~g~iv~LS~~K~GS 926 (1029)
. .+..|++|+|||||||++|+.++.. .+..|+..++++...|...++|+
T Consensus 314 ~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk 393 (412)
T 3k62_A 314 DGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGK 393 (412)
T ss_dssp HSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHH
T ss_pred HHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 50357765451699998669936899999999754633220110122113445467899999999988788744699712
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999408
Q 001686 927 NVVEKCLTFG 936 (1029)
Q Consensus 927 rVVEklL~~a 936 (1029)
+|++++-+..
T Consensus 394 ~i~~~l~~~~ 403 (412)
T 3k62_A 394 KMIETLANLR 403 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8999999752
No 10
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=306.88 Aligned_cols=301 Identities=17% Similarity=0.262 Sum_probs=216.7
Q ss_pred CCHHHHHHHHHHHHC---CCC-CCCCHHHH---HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHCC
Q ss_conf 311225689986211---656-53108656---89999985098858999997410999999999999-86869874337
Q 001686 670 MEGRLSSSLLDEFKT---NKT-RSFELSDI---VDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPE-IIPHARTLMTD 741 (1029)
Q Consensus 670 ~~~~~~s~LLeef~s---~ee-k~l~L~EI---~GkiveLA~Dq~GSRvIQklLe~~S~Eqr~~IfeE-I~~~lleLmtD 741 (1029)
..+..+++++|.... +++ +....+++ ..+++++++|++|++++|++|++++++++..++.+ +.+++..|+.|
T Consensus 26 a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~ 105 (382)
T 3v71_A 26 AIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKD 105 (382)
T ss_dssp HHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTS
T ss_pred CCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHC
T ss_conf 04871029999870438868999999999986277899996282887999999985999999999999731139887737
Q ss_pred CCCCEEHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHC--HHHHHHHHCCCCCH
Q ss_conf 5556200045203699999999999756-69884302334156767755058578999999310--23989860346875
Q 001686 742 VFGNYVIQKFFEHGTESQRAQLASQLTG-HVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELD--GSVMKCVHDQNGNH 818 (1029)
Q Consensus 742 ~fGshVIQKLLe~~s~eqr~~Li~~Lkg-~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL~--g~i~~Li~DqnGSh 818 (1029)
.+|++||||++++++.+++..|+.++.+ ++..|+.|.+|+||||++|+.++.+.+..|++++. +++..++.|++|++
T Consensus 106 ~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~Gc~ 185 (382)
T 3v71_A 106 KFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCR 185 (382)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTHHH
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCHHHH
T ss_conf 50569999999978999999999985412669996185615199999997899999999999954531176826951159
Q ss_pred HHHHHHHHCCHHH-----------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-HHHHHHHHHH-HHHHHHHHHC
Q ss_conf 7899883099357-----------9899985321053510486640468788630699-8789999999-9999999720
Q 001686 819 VIQKCIECIPQDR-----------IQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD-ANTQQIIMDE-IMQHVCNLAQ 885 (1029)
Q Consensus 819 VIQklLE~~~~e~-----------~q~Iie~l~g~lvsLA~hkyGs~VIQklLe~c~d-~~~~~~IleE-Ll~~L~~LA~ 885 (1029)
|+|+||+.++++. ...|++.+..++..|+.++||++|||++|+++.. +..+..|+++ +.+++..|++
T Consensus 186 VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~~~~~~Ls~ 265 (382)
T 3v71_A 186 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQ 265 (382)
T ss_dssp HHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTTTCHHHHTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999996887642114557899999999999998999864752019999998449974788999999999998999965
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHH-----------HHHHHCCCCHHHHHHHHHHHHCCHH---------------
Q ss_conf 97840999999730894019999999999-----------9975226743789999999408999---------------
Q 001686 886 DQYGNYVIQHVLEHGKPHERTTVITQLAG-----------QIVRMSQQKFASNVVEKCLTFGSPE--------------- 939 (1029)
Q Consensus 886 DqyGNyVVQ~ILe~~~pk~r~~Ii~~L~g-----------~iv~LS~~K~GSrVVEklL~~as~k--------------- 939 (1029)
|+||++||+++|++++++.+..|++.+.. .+..|..++||..||+++|..+++.
T Consensus 266 ~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~~~ 345 (382)
T 3v71_A 266 DKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAILL 345 (382)
T ss_dssp STTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTTHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHCCCCHHHHH
T ss_conf 70675999999986999999999999982134555565258999877997139999999974340234100123056776
Q ss_pred ----HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHH
Q ss_conf ----9999999994499998469985409865799999983
Q 001686 940 ----ERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLE 976 (1029)
Q Consensus 940 ----~Rk~IIkeLlg~~d~~e~L~~La~DqyGnyVIQklL~ 976 (1029)
.++.|+..+. .++..|...++|.+||.++..
T Consensus 346 ~~~~~~~~l~~~i~------~~~~~l~~~~~Gk~i~~~l~~ 380 (382)
T 3v71_A 346 LYSGWYEKMKQRVL------QHASRLERFSSGKKIIDSVMR 380 (382)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHCCCHHHHHHHHHH
T ss_conf 54689999999999------889876118863899999873
Done!