BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001687
(1029 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11
Length = 92
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 51/78 (65%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKT 67
Query: 285 YYYNKVTKQSKWSLPDEL 302
YYYN TK+S+W+ P EL
Sbjct: 68 YYYNSQTKESRWAKPKEL 85
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 25/39 (64%)
Query: 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQ 308
A + W E SPDGR YYYN TKQS W PD+LK EQ
Sbjct: 12 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQ 50
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
WKE A GR YY+N T+ STW+KP EL++ E WK + DG+ YYYN T+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 293 QSKWSLP 299
++ W++P
Sbjct: 64 ETSWTIP 70
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDEL-----KLAREQAEKAS 313
WKE GR YYYN +TK+S W P EL L RE KA+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAA 48
>pdb|1UZC|A Chain A, The Structure Of An Ff Domain From Human HypaFBP11
pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate
At Atomic Resolution
Length = 71
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 473 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQ 532
+ + K EAK AFK LL+ V S+ +W+QA++ IIND RY AL L E+K AFN Y Q
Sbjct: 9 YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ 68
Query: 533 KKK 535
+K
Sbjct: 69 TEK 71
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 548 ARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 597
A+ +K++L+E + S+ W +A+ M ND R+ AL + ++K F+ +
Sbjct: 17 AKQAFKELLKEK-RVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 65
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21
Length = 75
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +++G YY++ + S W+KP +++ T W E S DG YYYN T
Sbjct: 7 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETG 66
Query: 293 QSKWSLPDE 301
+S+W PD+
Sbjct: 67 ESRWEKPDD 75
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
V+T W E S DG YY+N T S W+KP
Sbjct: 44 VKTVWVEGLSEDGFTYYYNTETGESRWEKP 73
>pdb|2LKS|A Chain A, Ff11-60
Length = 50
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 478 KLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERK 523
K EAK AFK LL+ V S+ +W+QA++ IIND RY AL L E+K
Sbjct: 4 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKK 49
>pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding
Transition State
Length = 49
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 475 YANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERK 523
+ K EAK AFK L+ V S+ +W+QA++ IIND RY AL L E+K
Sbjct: 1 WNTKEEAKQAFKEALKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKK 49
>pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains
pdb|3HFH|B Chain B, Crystal Structure Of Tandem Ff Domains
Length = 190
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW+ L I+ D RY L ER F++Y+ + +++ E + +A +D+ EE
Sbjct: 25 TWEXELHXIVFDPRYLLLNP-XERXQVFDQYVXTRAEEERREXXNXIXQAXEDFXXXXEE 83
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
+ +S+ D RF A+E DR+ +F++ + + E + +
Sbjct: 84 A-XFNPRATFSEFAAXHAXDSRFXAIEXXXDREALFNEFVAAARXXEXEDSXTRGEXIXS 142
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSRLD 653
++ + L S + + ++W V D +E+D R +D
Sbjct: 143 DFFELL-SNHHLDSQSRWSXVXDXVESDPRYXAVD 176
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 510 DRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWS 569
D R+ A+ +R+ FNE++ + + E+ + + D+ ++L L S +RWS
Sbjct: 102 DSRFXAIEXXXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRWS 160
Query: 570 KAVTMFENDERFKALERERDRKDMFDDHLD 599
E+D R+ A++ R+D+F +++
Sbjct: 161 XVXDXVESDPRYXAVDSSSXREDLFXQYIE 190
>pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus
pdb|2JUP|W Chain W, Fbp28ww2 Domain In Complex With The Pplipppp Peptide
pdb|2RLY|W Chain W, Fbp28ww2 Domain In Complex With Ptppplpp Peptide
pdb|2RM0|W Chain W, Fbp28ww2 Domain In Complex With A Ppplipppp Peptide
Length = 37
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ YY+N RT STW+KP EL
Sbjct: 6 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 303
A A ++W E+ + DG+ YYYN T +S W P ELK
Sbjct: 2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37
>pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide
Apptppplpp
pdb|1YWJ|A Chain A, Structure Of The Fbp11ww1 Domain
Length = 41
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301
A + W E SPDGR YYYN TKQS W PD+
Sbjct: 8 GSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W EH S DGR YY+N T+ STW+KP
Sbjct: 14 WTEHKSPDGRTYYYNTETKQSTWEKP 39
>pdb|2E71|A Chain A, Solution Structure Of The Second Ff Domain Of Human
Transcription Factor Ca150
Length = 83
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 540 ERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599
E++ K+ +A++D+KKM+EE+ + +S+ D RFKA+E+ +DR+ +F++ +
Sbjct: 11 EKKNKIMQAKEDFKKMMEEA-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVA 69
Query: 600 ELKQKER 606
++KE+
Sbjct: 70 AARKKEK 76
>pdb|2NNT|A Chain A, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|B Chain B, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|C Chain C, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|D Chain D, General Structural Motifs Of Amyloid Protofilaments
Length = 40
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261
++W E+ +ADG+ +Y+N RT STW+KP EL
Sbjct: 9 SEWTEYKTADGKTFYYNNRTLESTWEKPQEL 39
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 303
A A ++W E+ + DG+ +YYN T +S W P ELK
Sbjct: 5 ATAVSEWTEYKTADGKTFYYNNRTLESTWEKPQELK 40
>pdb|1ZR7|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11
pdb|2DYF|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11 HYPA
(Fbp11 Ww1) Complexed With A Pl (Pplp) Motif Peptide
Ligand
Length = 30
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDE 301
W E SPDGR YYYN TKQS W PD+
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKPDD 30
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W EH S DGR YY+N T+ STW+KP
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKP 28
>pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
pdb|4FQG|B Chain B, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
Length = 190
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 474 AYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERKTAFNEYLG 531
++ + EA FKALL SD +W R + D R+ G+L E++ FNE++
Sbjct: 1 SHMKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIE 60
Query: 532 QKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER 580
K K R+ ++++L+E+ +T ++ W + + + D R
Sbjct: 61 ALTK-----------KKREHFRQLLDETSAITLTSTWKEVKKIIKEDPR 98
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 543 LKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKA---LERERDRKDMFDDHLD 599
+K ++A ++K +L + V +S WS D R+++ LERE +++ +F++H++
Sbjct: 3 MKREEAIQNFKALLSDMVR-SSDVSWSDTRRTLRKDHRWESGSLLERE-EKEKLFNEHIE 60
Query: 600 ELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDR 657
L +K+R +R+ L+ I + W++V+ ++ D RC + DR
Sbjct: 61 ALTKKKRE-----------HFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDR 107
>pdb|2KIQ|A Chain A, Solution Structure Of The Ff Domain 2 Of Human
Transcription Elongation Factor Ca150
Length = 62
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 543 LKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHL 598
+K+ +A++D+KKM+EE+ + +S+ D RFKA+E+ +DR+ +F++ +
Sbjct: 3 MKIMQAKEDFKKMMEEA-KFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFV 57
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W++ SADGR YYFN T S W++P
Sbjct: 11 WEKRMSADGRVYYFNHITNASQWERP 36
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLP 299
W++ S DGR YY+N +T S+W P
Sbjct: 11 WEKRMSADGRVYYFNHITNASQWERP 36
>pdb|2YSI|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Transcription Elongation Regulator 1, Transcription
Factor Ca150
Length = 40
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
+ G + W E+ + DG+ YY+N RTR S W KP
Sbjct: 4 GSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302
W E +PDG+ YYYN T++S W+ PD +
Sbjct: 12 WVENKTPDGKVYYYNARTRESAWTKPDGV 40
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W+ T +G+ YYFN RT +TW++P
Sbjct: 13 WERRTDVEGKVYYFNVRTLTTTWERP 38
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In Complex
With A Phosphorylated Ptpy Motif Derived From Human
Smad3
Length = 35
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
G+ + W+E A GR YY N R +TW +P
Sbjct: 1 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 31
>pdb|2DOE|A Chain A, Solution Structure Of The Third Ff Domain Of Human
Transcription Factor Ca150
Length = 83
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 539 EERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHL 598
E+ + + +K + D+ ++L L S +RWSK E+D R+KA++ R+D+F ++
Sbjct: 10 EDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYI 68
Query: 599 DEL 601
+++
Sbjct: 69 EKI 71
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
G+ + W+E A GR YY N R +TW +P
Sbjct: 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived Peptide
Length = 34
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
G+ + W+E A GR YY N R +TW +P
Sbjct: 2 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 32
>pdb|2G7C|A Chain A, Clostridium Difficile Toxin A Fragment Bound To
Agal(1,3)bgal(1,4) Bglcnac
pdb|2G7C|B Chain B, Clostridium Difficile Toxin A Fragment Bound To
Agal(1,3)bgal(1,4) Bglcnac
Length = 255
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 20/54 (37%)
Query: 238 SADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVT 291
+ DG++YYFN T A+A+T W+ DG+KYY+N T
Sbjct: 9 TIDGKKYYFNTNT-----------------AEAATGWQTI---DGKKYYFNTNT 42
>pdb|1E0M|A Chain A, Prototype Ww Domain
Length = 37
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 228 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
G+ W E+ + +G+ YY+N T+ STW P
Sbjct: 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDP 33
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLP 299
W E+ + +G+ YYYN TK S W+ P
Sbjct: 8 WDEYKTHNGKTYYYNHNTKTSTWTDP 33
>pdb|2DK7|A Chain A, Solution Structure Of Ww Domain In Transcription
Elongation Regulator 1
Length = 73
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADA 270
T W + D R +++N TR+S WD+P +L I RAD
Sbjct: 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGRADV 56
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 271 STDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNS 325
T W + D R ++YN T+ S W PD+L + R +K + ++ P+S
Sbjct: 19 GTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL-IGRADVDKIIQEPPHKKSGPSS 72
>pdb|2YSG|A Chain A, Solution Structure Of The Ww Domain From The Human
Syntaxin- Binding Protein 4
Length = 40
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 226 AEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
+ G+ W+E +ADG +Y+ N T+ ++W P
Sbjct: 5 SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37
>pdb|2BBH|A Chain A, X-Ray Structure Of T.Maritima Cora Soluble Domain
Length = 269
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 578 DERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
D+ F LE+ D D+ ++ + E +KE + + KRN++E RK
Sbjct: 182 DDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRK 226
>pdb|2DOF|A Chain A, Solution Structure Of The Fourth Ff Domain Of Human
Transcription Factor Ca150
Length = 85
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERKTAFNEYL 530
EA FKALL SD +W R + D R+ G+L E++ FNE++
Sbjct: 18 EAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHI 70
>pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 183
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 21/80 (26%)
Query: 429 MSASDL------VGASDKVP-PPVTEETRKD---AVRGEKVSDALEEKTVEQEHFAYAN- 477
+ ASDL G+ +VP PP+TEE RKD VRGE EQ A N
Sbjct: 82 IMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE----------AEQARVAVRNV 131
Query: 478 KLEAKNAFKALLESANVGSD 497
+ +A + KALL+ + D
Sbjct: 132 RRDANDKVKALLKDKEISED 151
>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf)
From Escherichia Coli
pdb|1ZN0|A Chain A, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
pdb|1ZN1|A Chain A, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s
Post- Termination Complex
pdb|2RDO|8 Chain 8, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|4GAS|Y Chain Y, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 185
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 21/80 (26%)
Query: 429 MSASDL------VGASDKVP-PPVTEETRKD---AVRGEKVSDALEEKTVEQEHFAYAN- 477
+ ASDL G+ +VP PP+TEE RKD VRGE EQ A N
Sbjct: 82 IMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE----------AEQARVAVRNV 131
Query: 478 KLEAKNAFKALLESANVGSD 497
+ +A + KALL+ + D
Sbjct: 132 RRDANDKVKALLKDKEISED 151
>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr
Virus Latent Membrane Protein 2a Derived Peptide
Eeppppyed
pdb|1YIU|A Chain A, Itch E3 Ubiquitin Ligase Ww3 Domain
Length = 37
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W++ T ++GR Y+ N TR++ W+ P
Sbjct: 10 WEKRTDSNGRVYFVNHNTRITQWEDP 35
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 578 DERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
D+ F LE+ D D+ ++ + E +KE + + KRN++E RK
Sbjct: 182 DDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRK 226
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 578 DERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
D+ F LE+ D D+ ++ + E +KE + + KRN++E RK
Sbjct: 191 DDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRK 235
>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30
Length = 37
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W++ T ++GR Y+ N TR+ W+ P
Sbjct: 10 WEKRTDSNGRVYFVNHNTRIXQWEDP 35
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W++ S +GR YYFN T S W++P
Sbjct: 11 WEKRMS-NGRVYYFNHITNASQWERP 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,767,142
Number of Sequences: 62578
Number of extensions: 939478
Number of successful extensions: 2394
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2289
Number of HSP's gapped (non-prelim): 118
length of query: 1029
length of database: 14,973,337
effective HSP length: 109
effective length of query: 920
effective length of database: 8,152,335
effective search space: 7500148200
effective search space used: 7500148200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)