BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001687
(1029 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B
PE=1 SV=1
Length = 992
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/1047 (47%), Positives = 667/1047 (63%), Gaps = 82/1047 (7%)
Query: 4 MANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGG 63
MANN Y G Q P Q P S+D PRGF PP+ Q+ P + APQ + ++SQ+FQ G
Sbjct: 1 MANNHQYPGIQ-PFQHPNASSIDLPRGFAPPMNFQFLPTIQAPQSEQVARLSSQNFQCVG 59
Query: 64 QGGLIMNAGFPSQPLQPPFRPLMHPLPARP---GPPAPSHVP-PPPQVMSLPNAQPSNHI 119
+GG +++ G+P Q P MH RP HVP PP ++S PN ++
Sbjct: 60 RGGTVLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQPNVSIAS-- 117
Query: 120 PPSSLPRPNVQALSSYPPGLGG----LGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMS 175
+SL +P VQ PG GG P A SY S PQ+ G
Sbjct: 118 -GTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSYE---GSRVPPQVTG----------- 162
Query: 176 QMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKE 235
PSI + Q S+ ++ S+ + PT EQ A L+P ++ TDW E
Sbjct: 163 ----PSIHSQAQQRASIIHTSAESSIMNPTFEQPKAAF-------LKPLPSQKALTDWVE 211
Query: 236 HTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSK 295
HTSADGR+Y+FNKRT+ STW+KP ELMT ERADA TDWKE +SPDGRKYYYNK+TKQS
Sbjct: 212 HTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQST 271
Query: 296 WSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSS 355
W++P+E+K+ REQAE AS++G P+++ I + ++ +++ + + + S+
Sbjct: 272 WTMPEEMKIVREQAEIASVQG------PHAEGIIDASEVLTRSDTASTAAPTGLPSQTST 325
Query: 356 PVAVVPIIAASET-QPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAV 414
V + S+ QPA SVP +S S V N D + D + + D S + G +V
Sbjct: 326 SEGVEKLTLTSDLKQPA--SVPGSS-----SPVENVDRVQMSADETSQLCDTSETDGLSV 378
Query: 415 --TDNTVAEA--KNNLS--------NMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDA 462
T+ + A K+ +S +MS + S P +E++K V EKV
Sbjct: 379 PVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGP----KESQKPMVESEKVESQ 434
Query: 463 LEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGER 522
EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+RYGALRTLGER
Sbjct: 435 TEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGER 494
Query: 523 KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK 582
K AFNE+L Q K+ EER + KK +D+K+MLEE VELT STRWSK VTMFE+DERFK
Sbjct: 495 KQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFK 554
Query: 583 ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 642
ALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK N+QWRKVQDR
Sbjct: 555 ALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDR 614
Query: 643 LEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADV 702
LE DERCSRL+K+D+LEIFQEYL DLE+EEEE++KIQKEEL K ERK+RDEF L++ +
Sbjct: 615 LEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHI 674
Query: 703 ALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD 762
A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+ E K++IKD
Sbjct: 675 ATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKD 734
Query: 763 AVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKR 822
+KLRK+ LS+ TF++FK S+ ED P I DV LKL+FDDLL + KEKEEKEA+K+ R
Sbjct: 735 VLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTR 794
Query: 823 LEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKD 882
++ D+L S K+I+A+S+WE + L+EGS++ S+IGDES + F+++V+ LKEQ+
Sbjct: 795 QTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYVSLLKEQSN- 853
Query: 883 YERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAE---N 939
+ K+ K E REE D+ + K GR+K+R RER+ +DH KK A + D E
Sbjct: 854 ---RIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDSDDHHKKGAAGKYNHDMNEPHGK 910
Query: 940 DSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPR-RLASTPESENESR 998
+ +RSG+D+ +HR+RH S + EN+ D K H+ KK R + E+E E +
Sbjct: 911 ERRRSGRDSHNRHRERHTS----VKENDTDHFKESHKAGGGHKKSRHQRGWVSEAEVEGK 966
Query: 999 HKRHRRDNRNGSRKNGDHEDLEDGEYG 1025
KR R++ +R++ E+LEDGE G
Sbjct: 967 EKRRRKEE---AREHTKEEELEDGECG 990
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
PE=1 SV=1
Length = 958
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1014 (48%), Positives = 683/1014 (67%), Gaps = 74/1014 (7%)
Query: 26 DPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPL 85
+PP+ G +Q+RP+VP Q QH+VP ASQ F P G + + P + L
Sbjct: 4 NPPQSSG----TQFRPMVPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQL 59
Query: 86 MHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPP-SSLPRPNVQALSSYPPGLGGLGR 144
P RPG P H+ Q +S+P Q + + S+ P+PN ++ G G
Sbjct: 60 ---FPVRPGQPV--HITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPMT----GFATSGP 110
Query: 145 PVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSIS-AGGQLGVSVSQSTVSSTPVQ 203
P ++ YTF PSSY Q Q V QP SQMHV + A V V+QST +PVQ
Sbjct: 111 PFSSPYTFVPSSYPQQQPTSLV-----QPNSQMHVAGVPPAANTWPVPVNQSTSLVSPVQ 165
Query: 204 PTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT 263
T +Q ++ P L P+SA +DW+EHTSADGR+YY+NKRT+ S W+KP ELMT
Sbjct: 166 QTGQQTPVAVSTDP-GNLTPQSA----SDWQEHTSADGRKYYYNKRTKQSNWEKPLELMT 220
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSP 323
+ERADAST WKEFT+P+G+KYYYNKVTK+SKW++P++LKLAREQA+ AS K + SE
Sbjct: 221 PLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEAG- 279
Query: 324 NSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVIT 383
T +S A SS+D++ STV +V S + + ++S Q L +VP T P
Sbjct: 280 --STPLSH-----HAASSSDLAVSTVTSVVPSTSSALTGHSSSPIQAGL-AVPVTRP--- 328
Query: 384 SSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPP 443
++AP+ S +I + T+ T + +NLS+ A D ++D
Sbjct: 329 --------------PSVAPVTPTSGAISD--TEATTIKG-DNLSSRGADD---SNDGATA 368
Query: 444 PVTE-ETRKDAVRGE-KVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWD 501
E E ++ +V G+ +S A ++ VE E YA K EAK AFK+LLES NV SDWTW+
Sbjct: 369 QNNEAENKEMSVNGKANLSPAGDKANVE-EPMVYATKQEAKAAFKSLLESVNVHSDWTWE 427
Query: 502 QALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVE 561
Q L+ I++D+RYGALRTLGERK AFNEYLGQ+KK +AEERR + KKAR+++ KMLEE E
Sbjct: 428 QTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEECEE 487
Query: 562 LTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYR 621
L+SS +WSKA+++FEND+RFKA++R RDR+D+FD+++ EL++KER KA EE ++ + +YR
Sbjct: 488 LSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMADYR 547
Query: 622 KFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKE 681
KFLE+CD+IKA TQWRK+QDRLE D+RCS L+K+DRL F+EY+ DLEKEEEE ++++KE
Sbjct: 548 KFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVEKE 607
Query: 682 ELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDL 741
+ + ERKNRD FR L+E VA G LTAKT W DYCI++KD P Y AVASNTSGSTPKDL
Sbjct: 608 HVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPKDL 667
Query: 742 FEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLI 801
FEDV EEL+KQ+ EDK+ +KDA+K RKI++ S+W FEDFK+++ ED ++ ISD+NLKLI
Sbjct: 668 FEDVTEELEKQYHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLKLI 727
Query: 802 FDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGD 861
+DDL+ +VKEKEEKEA+K +RL +EF +LL + KEI+ S WE+ +QL+E SQE+ SIGD
Sbjct: 728 YDDLVGRVKEKEEKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGD 787
Query: 862 ESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKE 921
ES+ +G+F+E++T L+E+AK+ ERKR EEK ++EKER+E+++RK K +E+ REREKE
Sbjct: 788 ESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREKEREREKE 847
Query: 922 DHS------KKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHD----SLDENEKDRS 971
+ DG + D KR GKD D+KHR+RH + D S ++ +
Sbjct: 848 KGKERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNNSDEDVSSDRDDRDESK 907
Query: 972 KNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYG 1025
K+ +H +DRKK R+ A++PESE+E+RHKR ++++ SR++G+ E LEDGE G
Sbjct: 908 KSSRKHGNDRKKSRKHANSPESESENRHKRQKKES---SRRSGNDE-LEDGEVG 957
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a
PE=1 SV=1
Length = 953
Score = 243 bits (619), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 210/679 (30%), Positives = 341/679 (50%), Gaps = 53/679 (7%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+ YYYN TK
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK 205
Query: 293 QSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVI 352
+S+W+ P EL+ ++G Q+ + S +++KA S+ T
Sbjct: 206 ESRWAKPKELE---------DLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTAST 256
Query: 353 VSSPVAVVPIIAAS--------ETQPALVSVPSTSPVITSSVVANADG-FPKTVDAIAPM 403
P +P ++ A + + + TS+ N G P +AP
Sbjct: 257 APVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVP-----VAPE 311
Query: 404 IDVSSSIGEAV-TDNTVA---EAKNNLSNMSA-SDLVGASDKVPPPVTEETRKDAVRGEK 458
+V+S + AV +NTV E + L+N +A DL G ++ T ++ + E
Sbjct: 312 PEVTSIVATAVDNENTVTVSTEEQAQLANTTAIQDLSG-------DISSNTGEEPAKQET 364
Query: 459 VSDALEEKTVEQEH-----FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 513
VSD +K E+ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY
Sbjct: 365 VSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 424
Query: 514 GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVT 573
AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+ KA
Sbjct: 425 SALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQ 484
Query: 574 MFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 633
MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++ + +
Sbjct: 485 MFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYS 543
Query: 634 TQWRKVQDRL------EADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTE 687
T W + Q L DE +DK D L F+E++ LEKEEEE+++ + +
Sbjct: 544 TTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQ 603
Query: 688 RKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 747
RKNR+ F+ ++ G L + ++W + + + + GST DLF+ VE
Sbjct: 604 RKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ-PGSTALDLFKFYVE 662
Query: 748 ELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLI 807
+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+ LL
Sbjct: 663 DLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLE 722
Query: 808 KVKEKEEKEAKKR----KRLEDEFFDLL-CSVKEISATSTWENCRQLLEGSQEFSSIGDE 862
K + +E + K+ KR E F +L + I + WE+ R+ F I E
Sbjct: 723 KAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLE 782
Query: 863 SICRGVFDEFVTQLKEQAK 881
S + +F +F+ L+ + +
Sbjct: 783 SERKRIFKDFMHVLEHECQ 801
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A
PE=1 SV=2
Length = 957
Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 204/683 (29%), Positives = 343/683 (50%), Gaps = 41/683 (6%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 285 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADI 344
YYYN TK+S+W+ P EL+ ++G Q+ S + S +++KA S+
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQ 248
Query: 345 SSSTVEVIVSSPVAVVPIIAAS-----ETQPALVSVPSTSPVITSSVVANADGFPKTVDA 399
T P +P ++ + + + + ++ + TV
Sbjct: 249 EECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSG 308
Query: 400 IAPMI---DVSSSIGEAV-TDNTVAEAKNNLSNMSASDLV-GASDKVPPPVTEETRKDAV 454
P++ +V+S + V +NTV + + ++++ + S +V EET K
Sbjct: 309 TVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQ-- 366
Query: 455 RGEKVSDALEEKTVEQEH-----FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIIN 509
E V+D +K E+ + + K EAK AFK LL+ V S+ +W+QA++ IIN
Sbjct: 367 --ETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIIN 424
Query: 510 DRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWS 569
D RY AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+
Sbjct: 425 DPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYK 484
Query: 570 KAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDF 629
KA MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++
Sbjct: 485 KAEQMFGEMEVWNAI-SERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMAN 543
Query: 630 IKANTQWRKVQDRL------EADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEEL 683
+ +T W + Q L DE +DK D L F+E++ LEKEEEE+++
Sbjct: 544 VTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRE 603
Query: 684 SKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFE 743
+ +RKNR+ F+ ++ G L + ++W + + + + GST DLF+
Sbjct: 604 RRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ-PGSTALDLFK 662
Query: 744 DVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFD 803
VE+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+
Sbjct: 663 FYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFN 722
Query: 804 DLLIKVKEKEEKEAKKR----KRLEDEFFDLL-CSVKEISATSTWENCRQLLEGSQEFSS 858
LL K + +E + K+ KR E F +L + I + WE+ R+ F
Sbjct: 723 SLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFED 782
Query: 859 IGDESICRGVFDEFVTQLKEQAK 881
I ES + +F +F+ L+ + +
Sbjct: 783 ITLESERKRIFKDFMHVLEHECQ 805
>sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b
PE=2 SV=2
Length = 870
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 237/442 (53%), Gaps = 14/442 (3%)
Query: 473 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQ 532
+++N+ +AK AFK LL V S+ +W+QA++ ++ D RY AL L E+K AFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 533 KKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKD 592
++K++ EE RL+ K+A+ + LE+ +TS+TR+ +A F + E + A+ ER+RK+
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVW-AVVPERERKE 389
Query: 593 MFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL------EAD 646
++DD L L +KE+ +A++ R+RNI + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 647 ERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGT 706
++ +DK D L F+E++ LE+EEEE+R+ + + +RKNR+ F+ ++ G
Sbjct: 450 QQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQ 509
Query: 707 LTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 766
L + + W + V + A GSTP DLF+ VEEL+ +F ++K IKD +K
Sbjct: 510 LHSMSTWMELYPAVSTDVRF-ANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKD 568
Query: 767 RKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKV----KEKEEKEAKKRKR 822
R + FEDF + D + + N+KL F+ LL K E+E++EA++ +R
Sbjct: 569 RGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEARETEREKEEARRMRR 628
Query: 823 LEDEFFDLL-CSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAK 881
E F +L +V + + WE R+ F I ES +F EF+ Q+ EQ +
Sbjct: 629 REAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFL-QVLEQTE 687
Query: 882 DYERKRKEEKAKREKEREERDR 903
K K R+ ++ R R
Sbjct: 688 CQHLHTKGRKHGRKGKKHHRKR 709
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 199 STPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
+ PV A T +SA T P++ W EH + DGR YY+N + S W+KP
Sbjct: 70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKP 123
Query: 259 FELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302
L + E + WKE+ S G+ YYYN +++S+W+ P +L
Sbjct: 124 SVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDL 167
Score = 40.0 bits (92), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELK 303
W E +PDGR YYYN KQS W P LK
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLK 127
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1
Length = 695
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 160/662 (24%), Positives = 304/662 (45%), Gaps = 104/662 (15%)
Query: 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL------KLAR-EQAEKASIKGTQSETS 322
++DW E + D R YYYN VT++S W P+EL KL++ E A+ G + +
Sbjct: 32 VASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYN 91
Query: 323 PNSQTSISFPSSVVKAPSSADISSSTVEVIVSSP----VAVVPIIAASETQPALVSVPST 378
N++ S+ DI +V P A+ I +++ +PA+ S+
Sbjct: 92 VNTRESV------------WDIPDEYKAALVDEPEQQKKALSSKIKSNDNKPAVQSIQRH 139
Query: 379 SPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGAS 438
P + + P + P D S I + T+ + V
Sbjct: 140 GPDVAA---------PSS----QPAKDQSQQISQGSHKRTI-------------NFVQQK 173
Query: 439 DKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDW 498
DK R ++ +D +H Y A+ AF L+S NV W
Sbjct: 174 DK--------------RQKRSNDY--------QHENYDTYEAAERAFFKFLDSHNVNPSW 211
Query: 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 558
TW+Q +R + + + Y ++ RK AF+ Y+ ++ + ++ K R ++ +ML+
Sbjct: 212 TWEQTVRELCDAKGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRVTKIRKEFIEMLKS 271
Query: 559 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 618
S ++ S T W F + F A E +++ +F ++ +L + E+ ++ RK +
Sbjct: 272 SDKIHSYTLWRTVKNEFSSHPAFNATSSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALD 331
Query: 619 EYRKFLESCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEE 672
++ L + +F + T+W Q + + D R +R L K+D L F++++ LE+E
Sbjct: 332 DFCSLLRNMNF-EPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHLEREY 390
Query: 673 EEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASN 732
++ QK+E + ERKNRD FR L++ +T +T W++ +KD P Y+ +
Sbjct: 391 ILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKELYPIIKDDPRYLNLLGQ 450
Query: 733 TSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPP 792
SGSTP DLF D + +L+ ++E + + D +++ +I++ T + A + E
Sbjct: 451 -SGSTPLDLFWDTIVDLENMYREKRNLVLDCLEVLQISVDDTSNIPEIIARLSEKLKDRE 509
Query: 793 ISDVNLKLIFDDLLIKVKEK------EEKEAKKRKRLEDEFFDLLCSVKE----ISATST 842
S+ + + ++++ ++++K EEK A +R R+ + +L ++K ISA ++
Sbjct: 510 ESEAVTEDLIEEVVNRLRDKAIHKKAEEKRADER-RIRRKIDNLRSAIKYLKPPISADAS 568
Query: 843 WENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERD 902
++ R L+ EF+++ E FD+++ +L+E KRE E++ ++
Sbjct: 569 YDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLRE--------------KRELEKQYQN 614
Query: 903 RR 904
RR
Sbjct: 615 RR 616
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 194/451 (43%), Gaps = 67/451 (14%)
Query: 197 VSSTPVQPTD-EQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTW 255
+S+ P Q ++ ++ T++ P+ P ++ V +DW E + D R YY+N TR S W
Sbjct: 1 MSAPPWQTSEYDETEGFTSNQEGPSAAP--SKTVASDWHEVKTEDSRVYYYNSVTRKSVW 58
Query: 256 DKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR----EQAEK 311
+KP ELM E+ + WKE+ + DG+KY+YN T++S W +PDE K A EQ +K
Sbjct: 59 EKPEELMNDFEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEPEQQKK 118
Query: 312 ASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPII-------- 363
A +S + + SI V APSS + ++ S + +
Sbjct: 119 ALSSKIKSNDNKPAVQSIQRHGPDVAAPSSQPAKDQSQQISQGSHKRTINFVQQKDKRQK 178
Query: 364 --------------AASETQPALVSVPSTSPVIT--SSV--VANADGFPKTVDAIAPMID 405
AA + + +P T +V + +A G+ D
Sbjct: 179 RSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238
Query: 406 VSSSIGEAVTDNTVAEAKNNLSNMSAS--DLVGASDKVPPPVTEETRKDAVRGEKVSDAL 463
+ I +TD + AE KN ++ + +++ +SDK+ T K+ +A
Sbjct: 239 FDAYILNYLTDQSDAE-KNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNAT 297
Query: 464 EEKTVEQE-HFAYANKL-------------EAKNAFKALLESANVGSDWTWDQALRAIIN 509
+T +Q+ F Y KL EA + F +LL + N W A
Sbjct: 298 SSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQ 357
Query: 510 DRRY---GALRTLGERK--TAFN--------EYLGQKKKQDAEERRLKLKKARDDYKKML 556
D RY ++ L + AF EY+ K+KQ E+ R++ +K RD ++ +L
Sbjct: 358 DPRYTRNSNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIE-RKNRDAFRALL 416
Query: 557 EE---SVELTSSTRWSKAVTMFENDERFKAL 584
++ ++T T+W + + ++D R+ L
Sbjct: 417 QDLRVQKKITLRTKWKELYPIIKDDPRYLNL 447
>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B
PE=1 SV=1
Length = 871
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/441 (32%), Positives = 235/441 (53%), Gaps = 21/441 (4%)
Query: 473 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQ 532
+++N+ +AK AFK LL V S+ +W+QA++ ++ D RY AL L E+K AFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 533 KKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKD 592
++K++ EE RL+ K+A+ + LE+ +TS+TR+ +A F E + A+ ERDRK+
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVW-AVVPERDRKE 389
Query: 593 MFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL------EAD 646
++DD L L +KE+ +A++ R+RNI + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 647 ERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGT 706
+ +DK D L F+E++ LE+EEEE+R+ + + +RKNR+ F+ ++ G
Sbjct: 450 HQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQ 509
Query: 707 LTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 766
L + + W + V + A GSTP DLF+ VEEL+ +F ++K IKD +K
Sbjct: 510 LHSMSTWMELYPAVSTDVRF-ANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKD 568
Query: 767 RKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL----IKVKEKEEKEAKKRKR 822
R + FEDF + D + + N+KL F+ LL + +E+E++EA++ +R
Sbjct: 569 RGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRR 628
Query: 823 LEDEFFDLL-CSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKE--- 878
E F +L +V + + WE R+ F I ES +F EF+ L++
Sbjct: 629 REAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTEC 688
Query: 879 -----QAKDYERKRKEEKAKR 894
+ + + RK K+ KR
Sbjct: 689 QHLHTKGRKHGRKGKKHHHKR 709
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 199 STPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
+ PV A T +SA T P++ W EH + DGR YY+N + S W+KP
Sbjct: 70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKP 123
Query: 259 FELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302
L + E + WKE+ S G+ YYYN +K+S+W+ P +L
Sbjct: 124 SVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDL 167
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans
GN=ZK1098.1 PE=1 SV=2
Length = 724
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 151/576 (26%), Positives = 276/576 (47%), Gaps = 84/576 (14%)
Query: 272 TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE-----QAEKASIKGTQSETS-PNS 325
+DW T+ G YY+N+VTKQ+ W PD LK E Q ++ K S+ P
Sbjct: 82 SDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYY 141
Query: 326 QTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSS 385
+++ + VK P +I+ E +PA +
Sbjct: 142 YNTLTKKTQWVK-PDGEEITKG-------------------EQKPAAKAA---------- 171
Query: 386 VVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPV 445
TVD +A V E+ D + ++ N+ P+
Sbjct: 172 ----------TVDTVALAAAVQQKKAESDLDKAMKATLASMPNV--------------PL 207
Query: 446 TEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALR 505
E +++ E V+D +E K + E F + + + ++ WDQA++
Sbjct: 208 PSEKKEE----ESVNDEVELKKRQSERF--------RELLRDKYNDGKITTNCNWDQAVK 255
Query: 506 AIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSS 565
I ND R+ L + E+K FN + Q+ K++ +E+RL +KK+++D +K L+E ++ S
Sbjct: 256 WIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEHPKMKES 315
Query: 566 TRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE 625
++ KA +F + + A+ E DRK++F D +D + ++++ K +E+RKR+I + L+
Sbjct: 316 LKYQKASDIFSKEPLWIAVNDE-DRKEIFRDCIDFVARRDKEKKEEDRKRDIAAFSHVLQ 374
Query: 626 SCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQ 679
S + I T W + Q L + + + +DK D L +F++++ EKE +E+++ +
Sbjct: 375 SMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQE 434
Query: 680 KEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPK 739
++ L + +RK R+E+R L+E+ G LT+ + W + + + GS+P
Sbjct: 435 EKRLRRQQRKVREEYRLLLESLHKRGELTSMSLWTS-LFPIISTDTRFELMLFQPGSSPL 493
Query: 740 DLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLK 799
DLF+ VE+L++Q+ ED+ IK+ + + + +T + +F V+ + N+K
Sbjct: 494 DLFKFFVEDLKEQYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMK 553
Query: 800 LIFDDLLIKVKEK---EEKEAKKRK-RLEDEFFDLL 831
L ++ L+ K + K EEKE+ +RK RLE EF +LL
Sbjct: 554 LCYNSLIEKAESKAKDEEKESLRRKRRLESEFRNLL 589
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 24/216 (11%)
Query: 156 SYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTAS 215
S+ P L+ NI + +P + + Q V + Q S V P +AA T
Sbjct: 7 SFLNPNLVAAANIQQVLLNQRFGMPPVGSIAQ--VPLLQMPTHSV-VAP---HVAAPTRP 60
Query: 216 APL---PTL---QPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD 269
+P+ P + + S+ V++DW HT+ G YY N+ T+ ++W KP L T +ER+
Sbjct: 61 SPMLVPPGMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERST 120
Query: 270 AST----DWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNS 325
+ WKEF S DG+ YYYN +TK+++W PD ++ + + + A+ T
Sbjct: 121 SGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAATVD------ 174
Query: 326 QTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVP 361
+++ ++V + + +D+ + + S P +P
Sbjct: 175 --TVALAAAVQQKKAESDLDKAMKATLASMPNVPLP 208
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C
PE=1 SV=1
Length = 835
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 153/600 (25%), Positives = 241/600 (40%), Gaps = 78/600 (13%)
Query: 67 LIMNAGFPSQP--LQPPFRPLMHPLPARPGPPAPSHVPPP-----PQVMSLPNAQPSNHI 119
++ NA F +P L PP LM PA PG S P P P M+ P P +
Sbjct: 88 MLANAPF-GRPGTLAPPG--LMTSPPAFPGSNPFSTTPRPGMSAGPAQMN-PGIHPHMYP 143
Query: 120 PPSSLPRPNVQALSSYPPGLGGLGR-PVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMH 178
P SLP Q + PP +GG+ R P + T P SY P I P S H
Sbjct: 144 PYHSLPG-TPQGMWLQPPSMGGIPRAPFLSHPTTFPGSYPFPVR----GISPNLPYSGSH 198
Query: 179 VPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAE---GVQTD-WK 234
S G +G V + P + D ++ + L + ++ G + D W
Sbjct: 199 PLGASPMGSVG------NVHALPGRQPD--ISPGRKTEELSGIDDRAGSQLVGNRLDAWT 250
Query: 235 EHTSADGRRYYFNKRTRVSTWDKP-----------FELMTTIERADASTDWKEFTSPDGR 283
H S G YY+N T ST++KP + + + TDW ++ DG+
Sbjct: 251 AHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGK 310
Query: 284 KYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPN------SQTSISFPSSVVK 337
KYYYN TK S W +P E+K ++ E+ +++ S S + TS+S P+
Sbjct: 311 KYYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLTEKGSDLTSLSAPAISNG 370
Query: 338 APSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPS------TSPVITSSVVANAD 391
+A + ++ SS + +V P ++ S T+ V S N+
Sbjct: 371 GRDAASLKTTN---FGSSALDLVKKKLHDSGMPVSSTITSEANSGKTTEVTPSGESGNST 427
Query: 392 GFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVP---PPVTEE 448
G K + D SS + + + E M + K P + +
Sbjct: 428 GKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFD 487
Query: 449 TRKDAVRGEKVSDALEEKTVEQEHFAYANKLE-----AKNAFKALLESANVGSDWTWDQA 503
R A+ V +L E+ V+ + A F+ LL+ A+ D D
Sbjct: 488 PRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDDASTDIDQHTD-- 545
Query: 504 LRAI----INDRRYGALRTLGERKTAFNE---YLGQKKKQDAEERRLKLKKARDDYKKML 556
RA ND R+ A+ ER+ NE L + +Q A+E R A D+K ML
Sbjct: 546 YRAFKKKWGNDLRFEAIER-KEREGLLNERVLSLKRSAEQKAQEIR---AAAASDFKTML 601
Query: 557 EESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRN 616
E E++ ++ WSK N+ R++++ E DR+ + +++ ELK +R E + R+
Sbjct: 602 RER-EISINSHWSKVKDSLRNEPRYRSVAHE-DREVFYYEYIAELKAAQRGDDHEMKARD 659
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 536 QDAEERRLKL--KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERE---RDR 590
Q+ E R K+ K+A Y+ +L E + ++ W+++ + E D + +A + D+
Sbjct: 680 QEVERVRQKIRRKEASSSYQALLVEKIRDPEAS-WTESKPILERDPQKRASNPDLEPADK 738
Query: 591 KDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCS 650
+ +F DH+ L ++ + + L++ D A W + L+ D R S
Sbjct: 739 EKLFRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGKTALNSWSTAKQVLKPDIRYS 798
Query: 651 RLDKMDRLEIFQEYLNDLEK-------EEEEQR 676
++ + DR +++ Y+ D+ + +EE+QR
Sbjct: 799 KMPRQDREVVWRRYVEDISRKQRHENYQEEKQR 831
Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 74/387 (19%), Positives = 160/387 (41%), Gaps = 55/387 (14%)
Query: 552 YKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQE 611
+K+ML+E + ++W K + D RFKA+ R+ +F+ ++ ++ER + +
Sbjct: 462 FKEMLKER-GIAPFSKWEKELPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRA 520
Query: 612 ERKRNIIEYRKFLESCDF-IKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEK 670
K I +R+ L+ I +T +R + + D R +++ +R + E + L++
Sbjct: 521 AHKAAIEGFRQLLDDASTDIDQHTDYRAFKKKWGNDLRFEAIERKEREGLLNERVLSLKR 580
Query: 671 EEEEQRK-------------IQKEELS--------KTERKNRDEFRKLMEADV------A 703
E++ + +++ E+S K +N +R + D
Sbjct: 581 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 640
Query: 704 LGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDA 763
+ L A D+ +K +D + + ++V QK +++ + A
Sbjct: 641 IAELKAAQRGDDHEMKARDEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQA 700
Query: 764 VKLRKIT-LSSTWTFEDFKASVLED----ATSPPISDVNLKLIFDDLLIKVKEKEEKEAK 818
+ + KI ++WT + K + D A++P + + + +F D VK E+
Sbjct: 701 LLVEKIRDPEASWT--ESKPILERDPQKRASNPDLEPADKEKLFRD---HVKSLYERCVH 755
Query: 819 KRKRLEDEFFDLLCSVKEI----SATSTWENCRQLLEGSQEFSSI--GDESICRGVFDEF 872
K L E + + +A ++W +Q+L+ +S + D + V+ +
Sbjct: 756 DFKALLAEALSSEAATLQTEDGKTALNSWSTAKQVLKPDIRYSKMPRQDREV---VWRRY 812
Query: 873 VTQLKEQAKDYERKRKEEKAKREKERE 899
V +D RK++ E + EK+R+
Sbjct: 813 V-------EDISRKQRHENYQEEKQRD 832
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
SV=2
Length = 1098
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 141/314 (44%), Gaps = 60/314 (19%)
Query: 458 KVSDALEEKTVEQEHFAYANK-LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL 516
+V D + E+E NK ++AK FK ++E A T+ + D R+ A+
Sbjct: 704 QVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAI 763
Query: 517 RTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 576
+ +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK E
Sbjct: 764 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVE 822
Query: 577 NDERFKALERERDRKDMFDDHLDEL----------------------------------- 601
+D R+KA++ R+D+F +++++
Sbjct: 823 SDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSE 882
Query: 602 --KQKERAKAQEERKRNIIEYRKFLESCDFIKA-NTQWRKVQDRLEADERCSRLDKMDRL 658
K+ +R + Q +R+ I ++ L D +++ + W + L D R
Sbjct: 883 QTKEIDREREQHKREEAIQNFKALL--SDMVRSSDVSWSDTRRTLRKDHRW--------- 931
Query: 659 EIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCI 718
E + LE+EE+E K+ E + +K R+ FR+L++ A+ TLT + W++
Sbjct: 932 ----ESGSLLEREEKE--KLFNEHIEALTKKKREHFRQLLDETSAI-TLT--STWKEVKK 982
Query: 719 KVKDSPPYMAVASN 732
+K+ P + +S+
Sbjct: 983 IIKEDPRCIKFSSS 996
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 44/173 (25%)
Query: 96 PAPSHVPPPPQVMSLPNAQPSNHIP--PSSLPRPNVQALSSYPPG--------LGGLGRP 145
PAP+ P V ++P P P P S+P+P A+ ++PP L G+ P
Sbjct: 322 PAPTATP----VQTVPQPHPQTLPPAVPHSVPQPTT-AIPAFPPVMVPPFRVPLPGMPIP 376
Query: 146 VAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPT 205
+ S + + G M+ VP I Q+ ++ S +T++
Sbjct: 377 LPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHP--QVAIAASPATLA------- 427
Query: 206 DEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 258
AT S +W E+ +ADG+ YY+N RT STW+KP
Sbjct: 428 ----GATAVS----------------EWTEYKTADGKTYYYNNRTLESTWEKP 460
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 776 TFEDFKASVLEDATSPPISDV-NLKLIFDDLLIKVKEKEEKEAKKR-KRLEDEFFDLLCS 833
TF +F A +D+ I + + + +F++ + ++KE++++K R ++++ +FF+LL S
Sbjct: 746 TFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-S 804
Query: 834 VKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQL-----KEQAKDYERKRK 888
+ + S W + +E + ++ S+ +F +++ ++ E+ K+ ER+ +
Sbjct: 805 NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQAR 864
Query: 889 EEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAE--NDSKRSGK 946
E + RE+ERE + R ++ + +RE+E H +++ + ++ S S
Sbjct: 865 IEASLREREREVQKARS-----EQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWS 919
Query: 947 DNDKKHRKRHQSAHDSLDE-NEKDRSKNPHRHNSDRKK 983
D + RK H+ SL E EK++ N H +KK
Sbjct: 920 DTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKK 957
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 100/201 (49%), Gaps = 28/201 (13%)
Query: 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERKTAFNEYLGQKKKQD 537
EA FKALL SD +W R + D R+ G+L E++ FNE++
Sbjct: 898 EAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHI------- 950
Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER---FKALERERDRKDMF 594
KK R+ ++++L+E+ +T ++ W + + + D R F + +R++ R+ F
Sbjct: 951 ----EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQRE--F 1004
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK-VQDRLEADERCSR 651
++++ +++ + R +++ KF+ S I+ + Q K V+ L+ D+R
Sbjct: 1005 EEYI-----RDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLV 1059
Query: 652 LDKM--DRLEIFQEYLNDLEK 670
LD + +R ++ Y++DL++
Sbjct: 1060 LDCVPEERRKLIVAYVDDLDR 1080
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 73/360 (20%)
Query: 538 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 596
A ER + +AR +K ML E +++ + W K + D R+ L ++RK +FD
Sbjct: 651 ARERAIVPLEARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQ 708
Query: 597 HLDELKQKERAKAQEERKRNII-----EYRKFLESCDFIKANTQWRKVQDRLEADERCSR 651
++ K RA+ + K+N I +++K +E F + + + D R
Sbjct: 709 YV-----KTRAEEERREKKNKIMQAKEDFKKMMEEAKF-NPRATFSEFAAKHAKDSRFKA 762
Query: 652 LDKM-DRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAK 710
++KM DR +F E++ K+E+E K + E++ + +F +L+ L ++
Sbjct: 763 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKI-------KSDFFELLSNH----HLDSQ 811
Query: 711 TNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDK-------TRIKDA 763
+ W KV+ P Y AV S S +DLF+ +E++ K +K RI+ +
Sbjct: 812 SRWSKVKDKVESDPRYKAV---DSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEAS 868
Query: 764 VKLRKITLSSTWT------------------FEDFKASVLEDATSPPIS--DVNLKLIFD 803
++ R+ + + ++FKA + + S +S D L D
Sbjct: 869 LREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKD 928
Query: 804 ------DLLIKVKEKEEKEAKKRKRLE-------DEFFDLLCSVKEISATSTWENCRQLL 850
LL E+EEKE + +E + F LL I+ TSTW+ ++++
Sbjct: 929 HRWESGSLL----EREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKII 984
Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 307
W E +PDG+ YYYN T++S W+ PD +K+ ++
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQ 170
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 299
T+ A A ++W E+ + DG+ YYYN T +S W P
Sbjct: 425 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKP 460
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W E+ + DG+ YY+N RTR S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 208 QMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIER 267
Q A A+AP+P T W + D R +++N TR+S WD+P +L I R
Sbjct: 519 QKAKPVATAPIPG----------TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGR 565
Query: 268 ADA 270
AD
Sbjct: 566 ADV 568
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1
SV=2
Length = 1100
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 141/314 (44%), Gaps = 60/314 (19%)
Query: 458 KVSDALEEKTVEQEHFAYANK-LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL 516
+V D + E+E NK ++AK FK ++E A T+ + D R+ A+
Sbjct: 706 QVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAI 765
Query: 517 RTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 576
+ +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK E
Sbjct: 766 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVE 824
Query: 577 NDERFKALERERDRKDMFDDHLDEL----------------------------------- 601
+D R+KA++ R+D+F +++++
Sbjct: 825 SDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSE 884
Query: 602 --KQKERAKAQEERKRNIIEYRKFLESCDFIKA-NTQWRKVQDRLEADERCSRLDKMDRL 658
K+ +R + Q +R+ I ++ L D +++ + W + L D R
Sbjct: 885 QTKEIDREREQHKREEAIQNFKALL--SDMVRSSDVSWSDTRRTLRKDHRW--------- 933
Query: 659 EIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCI 718
E + LE+EE+E K+ E + +K R+ FR+L++ A+ TLT + W++
Sbjct: 934 ----ESGSLLEREEKE--KLFNEHIEALTKKKREHFRQLLDETSAI-TLT--STWKEVKK 984
Query: 719 KVKDSPPYMAVASN 732
+K+ P + +S+
Sbjct: 985 IIKEDPRCIKFSSS 998
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 776 TFEDFKASVLEDATSPPISDV-NLKLIFDDLLIKVKEKEEKEAKKR-KRLEDEFFDLLCS 833
TF +F A +D+ I + + + +F++ + ++KE++++K R ++++ +FF+LL S
Sbjct: 748 TFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-S 806
Query: 834 VKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQL-----KEQAKDYERKRK 888
+ + S W + +E + ++ S+ +F +++ ++ E+ K+ ER+ +
Sbjct: 807 NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQAR 866
Query: 889 EEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAE--NDSKRSGK 946
E + RE+ERE + R ++ + +RE+E H +++ + ++ S S
Sbjct: 867 IEASLREREREVQKARS-----EQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWS 921
Query: 947 DNDKKHRKRHQSAHDSLDE-NEKDRSKNPHRHNSDRKK 983
D + RK H+ SL E EK++ N H +KK
Sbjct: 922 DTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKK 959
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 100/201 (49%), Gaps = 28/201 (13%)
Query: 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERKTAFNEYLGQKKKQD 537
EA FKALL SD +W R + D R+ G+L E++ FNE++
Sbjct: 900 EAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHI------- 952
Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER---FKALERERDRKDMF 594
KK R+ ++++L+E+ +T ++ W + + + D R F + +R++ R+ F
Sbjct: 953 ----EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQRE--F 1006
Query: 595 DDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK-VQDRLEADERCSR 651
++++ +++ + R +++ KF+ S I+ + Q K V+ L+ D+R
Sbjct: 1007 EEYI-----RDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLV 1061
Query: 652 LDKM--DRLEIFQEYLNDLEK 670
LD + +R ++ Y++DL++
Sbjct: 1062 LDCVPEERRKLIVAYVDDLDR 1082
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 60/184 (32%)
Query: 96 PAPSHVP----PPPQVMSLPNAQPSN--------------HIPPSSLPRPNVQALSSYPP 137
PAP+ P P P +LP A P + +PP +P P + P
Sbjct: 324 PAPTATPVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGM------PI 377
Query: 138 GLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTV 197
L G+ S + + + G M+ VP I Q+ ++ S +T+
Sbjct: 378 PLPGVAMMQIVSCPYV-------KTVATTKTGVLPGMAPPIVPMIHP--QVAIAASPATL 428
Query: 198 SSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDK 257
+ AT S +W E+ +ADG+ YY+N RT STW+K
Sbjct: 429 A-----------GATAVS----------------EWTEYKTADGKTYYYNNRTLESTWEK 461
Query: 258 PFEL 261
P EL
Sbjct: 462 PQEL 465
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 73/360 (20%)
Query: 538 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 596
A ER + +AR +K ML E +++ + W K + D R+ L ++RK +FD
Sbjct: 653 ARERAIVPLEARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQ 710
Query: 597 HLDELKQKERAKAQEERKRNII-----EYRKFLESCDFIKANTQWRKVQDRLEADERCSR 651
++ K RA+ + K+N I +++K +E F + + + D R
Sbjct: 711 YV-----KTRAEEERREKKNKIMQAKEDFKKMMEEAKF-NPRATFSEFAAKHAKDSRFKA 764
Query: 652 LDKM-DRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAK 710
++KM DR +F E++ K+E+E K + E++ + +F +L+ + L ++
Sbjct: 765 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKI-------KSDFFELL----SNHHLDSQ 813
Query: 711 TNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDK-------TRIKDA 763
+ W KV+ P Y AV S S +DLF+ +E++ K +K RI+ +
Sbjct: 814 SRWSKVKDKVESDPRYKAV---DSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEAS 870
Query: 764 VKLRKITLSSTWT------------------FEDFKASVLEDATSPPIS--DVNLKLIFD 803
++ R+ + + ++FKA + + S +S D L D
Sbjct: 871 LREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKD 930
Query: 804 ------DLLIKVKEKEEKEAKKRKRLE-------DEFFDLLCSVKEISATSTWENCRQLL 850
LL E+EEKE + +E + F LL I+ TSTW+ ++++
Sbjct: 931 HRWESGSLL----EREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKII 986
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 264 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 303
T+ A A ++W E+ + DG+ YYYN T +S W P ELK
Sbjct: 427 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 466
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 307
W E +PDG+ YYYN T++S W+ PD +K+ ++
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQ 170
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKP 258
W E+ + DG+ YY+N RTR S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 208 QMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIER 267
Q A A+ P+P T W + D R +++N TR+S WD+P +L I R
Sbjct: 521 QKAKPVATTPIPG----------TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGR 567
Query: 268 ADA 270
AD
Sbjct: 568 ADV 570
>sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1
Length = 583
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
WKE A GR YY+N T+ STW+KP EL++ E WK + DG+ YYYN T+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 293 QSKWSLP 299
++ W++P
Sbjct: 64 ETSWTIP 70
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 105/492 (21%), Positives = 217/492 (44%), Gaps = 65/492 (13%)
Query: 435 VGASDKVPPPVTEETRKDA----VRGEKVSDALEEK-----TVEQEHFAYAN-------- 477
+ A +K P+ E+ V G +++ EK T+ +E YAN
Sbjct: 69 IPAFEKKVEPIAEQKHDTVSHAQVNGNRIALTAGEKQEPGRTINEEESQYANNSKLLNVR 128
Query: 478 ---KLEAKNAFKALLESANVGSDWTWDQALRAI-INDRRYGALRT--LGERKTAFNEYLG 531
K EA+ F +L+ V S W++ + + + D RY + L +K F +YL
Sbjct: 129 RRTKEEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLW-KKEMFEKYLS 187
Query: 532 QKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK-ALERERDR 590
+ + + K ++ ++KML+ + + TRW A + ++ +K ++ E+ +
Sbjct: 188 NRSADQLLKEHNETSKFKEAFQKMLQNNSHIKYYTRWPTAKRLIADEPIYKHSVVNEKTK 247
Query: 591 KDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN---TQWRKVQD------ 641
+ F D++D L ++ ++ + + + E R++L ++ W+++ +
Sbjct: 248 RQTFQDYIDTLIDTQKESKKKLKTQALKELREYLNGIITTSSSETFITWQQLLNHYVFDK 307
Query: 642 --RLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKT--ERKNRDEFRKL 697
R A+ L D L + + +N +E + Q K+ + L +R RD F+ L
Sbjct: 308 SKRYMANRHFKVLTHEDVLNEYLKIVNTIEN--DLQNKLNELRLRNYTRDRIARDNFKSL 365
Query: 698 MEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDK 757
+ +V + + A T W D +K P ++ + +GS+ DLF D V+E + +
Sbjct: 366 LR-EVPIK-IKANTRWSDIYPHIKSDPRFLHMLGR-NGSSCLDLFLDFVDEQRMYIFAQR 422
Query: 758 TRIKDAVKLRKITLSSTW--------TFEDFKASVLEDATSPPISDVNLKLIFDDLLIKV 809
+ + + I + W T ++ + + D + ++ LI D L+ +
Sbjct: 423 SIAQQTL----IDQNFEWNDADSDEITKQNIEKVLENDRKFDKVDKEDISLIVDGLIKQR 478
Query: 810 KEKEEKEAKKRKRLEDE---FFDLLCSVKEISAT-----STWENCRQLLEGSQEFSSIGD 861
EK +++ + +R+ ++ +F LL + + T STW+ + L S E+ ++GD
Sbjct: 479 NEKIQQKLQNERRILEQKKHYFWLLLQ-RTYTKTGKPKPSTWDLASKELGESLEYKALGD 537
Query: 862 E-SICRGVFDEF 872
E +I R +F++F
Sbjct: 538 EDNIRRQIFEDF 549
>sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus
GN=Tcerg1l PE=2 SV=3
Length = 590
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 485 FKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLK 544
F+ +L V + TW++ L I+ D RY L + ERK F +++ + K++ +ER+ K
Sbjct: 461 FRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYKERKSK 519
Query: 545 LKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQK 604
L A++++KK+LEES +++ T + + D+RF+ +++ +D++ F+ + LK++
Sbjct: 520 LLLAKEEFKKLLEES-KVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKR 578
Query: 605 ERAKAQEERK 614
++ RK
Sbjct: 579 DKENRLRLRK 588
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 479 LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDA 538
L AK FK LLE + V T+ + D+R+ ++ +++ FN+++ KK+D
Sbjct: 521 LLAKEEFKKLLEESKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKRD- 579
Query: 539 EERRLKLKKAR 549
+E RL+L+K R
Sbjct: 580 KENRLRLRKMR 590
Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 630 IKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERK 689
+ A + W K ++ D R L+ +R +IF++++ KEE ++RK K L+K
Sbjct: 470 VSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRIKEEYKERK-SKLLLAK---- 524
Query: 690 NRDEFRKLME 699
+EF+KL+E
Sbjct: 525 --EEFKKLLE 532
>sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1
Length = 374
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +ADG YY++ T S W+KP +++ A W E S DG YYYN T
Sbjct: 127 WVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAIWVEGLSEDGYTYYYNTETG 186
Query: 293 QSKWSLPDEL 302
+SKW PD+
Sbjct: 187 ESKWEKPDDF 196
>sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4
Length = 376
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +ADG YY++ T S W+KP +++ A W E S DG YYYN T
Sbjct: 129 WVEGVTADGHCYYYDLITGASQWEKPEGFQGNLKKTAAKAVWVEGLSEDGYTYYYNTETG 188
Query: 293 QSKWSLPDEL 302
+SKW P++
Sbjct: 189 ESKWEKPEDF 198
>sp|O75554|WBP4_HUMAN WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1
Length = 376
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 292
W E +++G YY++ + S W+KP +++ T W E S DG YYYN T
Sbjct: 128 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETG 187
Query: 293 QSKWSLPDEL 302
+S+W PD+
Sbjct: 188 ESRWEKPDDF 197
>sp|Q5VWI1|TCRGL_HUMAN Transcription elongation regulator 1-like protein OS=Homo sapiens
GN=TCERG1L PE=2 SV=2
Length = 586
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
Query: 485 FKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLK 544
F+ +L V + TW++ L I+ D RY L + ERK F +++ + K++ +E++ K
Sbjct: 457 FRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYKEKKSK 515
Query: 545 LKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQK 604
L A++++KK+LEES +++ T + + + D+RF+ +++ +D++ F+ + LK++
Sbjct: 516 LLLAKEEFKKLLEES-KVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKR 574
Query: 605 ERAKAQEERK 614
++ RK
Sbjct: 575 DKENRLRLRK 584
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 479 LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDA 538
L AK FK LLE + V T+ + D+R+ ++ +++ FN+++ KK+D
Sbjct: 517 LLAKEEFKKLLEESKVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKRD- 575
Query: 539 EERRLKLKKAR 549
+E RL+L+K R
Sbjct: 576 KENRLRLRKMR 586
>sp|Q5U4Q0|WAC_XENTR WW domain-containing adapter protein with coiled-coil OS=Xenopus
tropicalis GN=wac PE=2 SV=1
Length = 628
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKY 285
DW EH S+ G++YY+N RT VS W+KP E + +R ++ + P R Y
Sbjct: 128 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKETSKVAVNSFPKDRDY 181
>sp|Q7ZUK7|WAC_DANRE WW domain-containing adapter protein with coiled-coil OS=Danio
rerio GN=waca PE=2 SV=1
Length = 558
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELM 262
DW EH S+ G++YY+N RT VS W+KP E +
Sbjct: 125 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWL 155
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 274 WKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302
W E TSPDG KYYYN +T +SKW P+E+
Sbjct: 597 WTEHTSPDGFKYYYNGLTGESKWEKPEEM 625
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,154,853
Number of Sequences: 539616
Number of extensions: 19218312
Number of successful extensions: 211837
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 4717
Number of HSP's that attempted gapping in prelim test: 111554
Number of HSP's gapped (non-prelim): 53042
length of query: 1029
length of database: 191,569,459
effective HSP length: 128
effective length of query: 901
effective length of database: 122,498,611
effective search space: 110371248511
effective search space used: 110371248511
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)