Query 001687
Match_columns 1029
No_of_seqs 431 out of 1140
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5104 PRP40 Splicing factor 100.0 5.9E-71 1.3E-75 601.0 35.8 528 227-874 11-558 (590)
2 KOG0155 Transcription factor C 100.0 2.6E-52 5.7E-57 464.0 37.3 344 476-841 239-613 (617)
3 KOG0152 Spliceosomal protein F 100.0 6.9E-54 1.5E-58 494.6 20.2 415 473-890 20-439 (463)
4 KOG0155 Transcription factor C 100.0 4.7E-36 1E-40 334.7 34.7 276 432-730 248-574 (617)
5 COG5104 PRP40 Splicing factor 99.9 9.5E-23 2.1E-27 224.3 26.3 196 481-677 215-429 (590)
6 KOG0152 Spliceosomal protein F 99.7 3.2E-17 6.8E-22 190.8 11.6 352 436-812 36-428 (463)
7 PF01846 FF: FF domain; Inter 99.2 5.1E-11 1.1E-15 98.5 5.8 50 480-529 1-51 (51)
8 smart00441 FF Contains two con 99.0 3E-10 6.5E-15 95.3 5.3 52 480-531 2-54 (55)
9 PF01846 FF: FF domain; Inter 98.9 2.5E-09 5.3E-14 88.5 6.3 50 547-597 1-51 (51)
10 smart00441 FF Contains two con 98.9 3.8E-09 8.2E-14 88.6 5.9 53 547-599 2-54 (55)
11 PF00397 WW: WW domain; Inter 98.5 5.6E-08 1.2E-12 72.1 2.6 28 231-258 3-31 (31)
12 PF00397 WW: WW domain; Inter 98.5 1.3E-07 2.8E-12 70.2 3.6 30 270-299 1-31 (31)
13 smart00456 WW Domain with 2 co 98.4 3.6E-07 7.8E-12 68.1 3.6 30 230-259 2-31 (32)
14 cd00201 WW Two conserved trypt 98.4 3.7E-07 8.1E-12 67.3 3.6 29 231-259 2-30 (31)
15 KOG1891 Proline binding protei 98.3 8.3E-07 1.8E-11 92.2 5.5 69 227-301 92-160 (271)
16 smart00456 WW Domain with 2 co 98.3 1.1E-06 2.4E-11 65.4 4.1 31 270-300 1-31 (32)
17 cd00201 WW Two conserved trypt 98.1 3.3E-06 7.1E-11 62.3 4.0 30 271-300 1-30 (31)
18 KOG1924 RhoA GTPase effector D 98.1 1.8E-05 3.8E-10 94.6 11.6 44 579-626 779-823 (1102)
19 KOG4271 Rho-GTPase activating 98.1 0.00015 3.3E-09 88.6 18.8 230 481-758 54-314 (1100)
20 KOG4271 Rho-GTPase activating 98.0 0.00024 5.1E-09 87.0 18.6 190 547-760 53-278 (1100)
21 KOG1984 Vesicle coat complex C 98.0 0.00025 5.3E-09 86.5 18.4 16 867-882 989-1004(1007)
22 KOG1924 RhoA GTPase effector D 97.7 0.00015 3.3E-09 86.8 10.7 16 290-305 647-662 (1102)
23 PHA03247 large tegument protei 97.5 0.019 4.2E-07 77.3 26.1 11 227-237 2849-2859(3151)
24 KOG0307 Vesicle coat complex C 97.4 0.017 3.6E-07 72.9 22.7 10 298-307 944-953 (1049)
25 KOG1984 Vesicle coat complex C 97.4 0.011 2.3E-07 72.8 20.0 18 587-604 640-657 (1007)
26 KOG3259 Peptidyl-prolyl cis-tr 97.3 0.00011 2.3E-09 72.4 2.0 33 229-261 7-40 (163)
27 KOG3259 Peptidyl-prolyl cis-tr 97.3 0.0001 2.2E-09 72.6 1.4 33 269-301 6-39 (163)
28 KOG4849 mRNA cleavage factor I 97.2 0.0053 1.1E-07 68.2 14.3 12 134-145 303-314 (498)
29 KOG4849 mRNA cleavage factor I 96.8 0.03 6.4E-07 62.4 15.3 6 140-145 326-331 (498)
30 KOG2893 Zn finger protein [Gen 96.6 0.029 6.4E-07 59.6 12.8 18 128-145 167-184 (341)
31 KOG1847 mRNA splicing factor [ 96.4 0.0035 7.7E-08 74.1 5.0 38 871-908 639-679 (878)
32 KOG2985 Uncharacterized conser 95.6 0.0077 1.7E-07 64.4 2.9 24 972-995 247-270 (306)
33 KOG2985 Uncharacterized conser 95.5 0.0074 1.6E-07 64.5 2.2 30 943-972 175-204 (306)
34 KOG1985 Vesicle coat complex C 95.2 0.35 7.6E-06 59.9 15.3 18 863-880 868-885 (887)
35 KOG0307 Vesicle coat complex C 95.1 1.8 3.9E-05 55.5 21.3 6 256-261 943-948 (1049)
36 KOG2002 TPR-containing nuclear 94.8 1.5 3.2E-05 55.6 19.3 37 609-645 624-671 (1018)
37 PHA03378 EBNA-3B; Provisional 94.4 1.9 4.1E-05 52.4 18.1 6 28-33 640-645 (991)
38 PHA03378 EBNA-3B; Provisional 93.8 1.2 2.6E-05 54.0 15.1 6 182-187 813-818 (991)
39 KOG0151 Predicted splicing reg 93.8 0.15 3.3E-06 61.8 7.6 26 980-1005 845-870 (877)
40 KOG4592 Uncharacterized conser 93.4 0.17 3.6E-06 60.6 7.1 10 238-247 298-307 (728)
41 KOG0940 Ubiquitin protein liga 93.3 0.092 2E-06 60.7 4.8 73 230-302 62-146 (358)
42 KOG1985 Vesicle coat complex C 92.7 1.7 3.6E-05 54.3 14.3 7 656-662 620-626 (887)
43 KOG0150 Spliceosomal protein F 92.5 0.058 1.3E-06 59.6 1.6 52 251-302 130-181 (336)
44 KOG2002 TPR-containing nuclear 92.4 2.7 5.9E-05 53.4 15.8 15 736-750 663-677 (1018)
45 KOG0608 Warts/lats-like serine 92.4 3.5 7.7E-05 50.4 15.9 14 655-668 720-733 (1034)
46 KOG3161 Predicted E3 ubiquitin 92.3 2.5 5.3E-05 51.3 14.4 11 191-201 590-600 (861)
47 PF07223 DUF1421: Protein of u 91.9 10 0.00022 44.1 18.6 6 247-252 323-328 (358)
48 KOG3671 Actin regulatory prote 91.9 3.7 8.1E-05 48.6 15.1 6 148-153 447-452 (569)
49 PF05890 Ebp2: Eukaryotic rRNA 90.3 9.3 0.0002 42.9 16.0 115 690-828 33-150 (271)
50 PF09770 PAT1: Topoisomerase I 89.6 0.1 2.2E-06 67.0 0.0 10 481-490 517-526 (808)
51 KOG4274 Positive cofactor 2 (P 89.2 2.6 5.7E-05 50.4 10.9 7 842-848 715-721 (742)
52 PF09770 PAT1: Topoisomerase I 89.1 0.12 2.5E-06 66.5 0.0 9 712-720 711-719 (808)
53 KOG3209 WW domain-containing p 88.5 0.85 1.8E-05 55.6 6.5 72 230-301 224-300 (984)
54 KOG2199 Signal transducing ada 87.4 2.2 4.8E-05 49.2 8.6 6 28-33 380-385 (462)
55 KOG1847 mRNA splicing factor [ 87.0 0.46 1E-05 57.0 3.2 15 986-1000 800-814 (878)
56 PF03154 Atrophin-1: Atrophin- 86.9 51 0.0011 42.6 20.6 29 480-518 549-577 (982)
57 KOG2236 Uncharacterized conser 86.5 4.5 9.7E-05 47.7 10.6 9 148-156 473-481 (483)
58 KOG3582 Mlx interactors and re 85.9 14 0.00031 45.6 14.5 9 130-138 488-496 (856)
59 KOG4307 RNA binding protein RB 85.5 12 0.00026 46.1 13.7 7 240-246 327-333 (944)
60 PF03154 Atrophin-1: Atrophin- 85.0 1E+02 0.0022 40.0 21.9 9 633-641 759-767 (982)
61 KOG0608 Warts/lats-like serine 84.2 36 0.00078 42.3 16.7 10 27-36 166-175 (1034)
62 KOG1450 Predicted Rho GTPase-a 83.8 1.6 3.4E-05 53.7 5.6 113 184-302 230-358 (650)
63 KOG3209 WW domain-containing p 83.6 1.1 2.4E-05 54.7 4.2 37 269-305 222-258 (984)
64 KOG3702 Nuclear polyadenylated 83.4 1.4 3.1E-05 53.6 5.0 21 969-989 154-174 (681)
65 KOG1923 Rac1 GTPase effector F 82.7 4.5 9.8E-05 50.3 8.8 28 866-893 716-743 (830)
66 KOG3794 CBF1-interacting corep 82.5 1.5 3.3E-05 50.2 4.5 13 871-883 215-227 (453)
67 KOG1029 Endocytic adaptor prot 81.4 14 0.0003 46.0 12.1 18 700-717 259-276 (1118)
68 KOG0150 Spliceosomal protein F 81.4 0.77 1.7E-05 51.1 1.6 35 230-264 150-184 (336)
69 KOG1923 Rac1 GTPase effector F 81.4 6.2 0.00013 49.1 9.3 17 655-671 620-636 (830)
70 KOG2138 Predicted RNA binding 79.4 0.58 1.2E-05 56.9 -0.1 18 937-954 805-822 (883)
71 KOG4520 Predicted coiled-coil 77.6 1.1 2.5E-05 46.4 1.4 21 992-1015 213-233 (238)
72 KOG4672 Uncharacterized conser 76.1 14 0.0003 43.0 9.5 13 477-489 471-483 (487)
73 KOG1891 Proline binding protei 75.9 2.2 4.8E-05 45.6 2.9 34 268-301 92-125 (271)
74 KOG1960 Predicted RNA-binding 75.4 35 0.00076 39.7 12.3 19 18-36 324-342 (531)
75 KOG2138 Predicted RNA binding 74.9 2.6 5.7E-05 51.5 3.6 24 938-961 829-852 (883)
76 PF03999 MAP65_ASE1: Microtubu 74.4 24 0.00052 44.3 12.1 27 736-762 322-348 (619)
77 KOG4167 Predicted DNA-binding 71.4 19 0.00041 44.8 9.5 26 11-36 30-55 (907)
78 KOG0151 Predicted splicing reg 70.8 8.4 0.00018 47.5 6.5 19 485-503 323-341 (877)
79 PF07960 CBP4: CBP4; InterPro 70.4 48 0.001 33.1 10.5 48 523-585 34-81 (128)
80 KOG0144 RNA-binding protein CU 69.0 8.4 0.00018 45.1 5.7 33 229-261 451-483 (510)
81 KOG1920 IkappaB kinase complex 68.3 4.2E+02 0.009 35.7 24.9 76 529-605 873-953 (1265)
82 KOG4307 RNA binding protein RB 67.5 52 0.0011 40.9 12.0 19 135-153 260-278 (944)
83 KOG3895 Synaptic vesicle prote 65.3 37 0.00079 39.1 9.6 25 94-120 431-455 (488)
84 KOG4302 Microtubule-associated 64.2 3.9E+02 0.0085 33.9 21.0 108 734-852 97-214 (660)
85 PF12905 Glyco_hydro_101: Endo 64.1 2.8 6.1E-05 48.9 0.8 25 279-303 380-404 (425)
86 PF06705 SF-assemblin: SF-asse 62.5 2.5E+02 0.0054 31.0 16.9 23 651-673 29-51 (247)
87 KOG4264 Nucleo-cytoplasmic pro 61.1 2.9E+02 0.0062 33.7 16.0 12 240-251 652-663 (694)
88 KOG3771 Amphiphysin [Intracell 59.0 1.4E+02 0.003 35.9 13.3 51 712-762 2-52 (460)
89 KOG0163 Myosin class VI heavy 58.7 2.6E+02 0.0057 35.5 15.6 13 800-812 903-915 (1259)
90 KOG4786 Ubinuclein, nuclear pr 58.0 85 0.0018 39.2 11.4 13 175-187 1097-1109(1136)
91 KOG3753 Circadian clock protei 57.7 50 0.0011 42.1 9.7 16 193-208 892-907 (1114)
92 KOG4043 Uncharacterized conser 57.0 3.2 7E-05 42.2 -0.3 28 927-954 164-191 (214)
93 KOG3161 Predicted E3 ubiquitin 56.9 1.1E+02 0.0024 38.0 12.0 11 242-252 673-683 (861)
94 KOG3794 CBF1-interacting corep 56.4 37 0.00081 39.4 7.8 15 870-884 218-232 (453)
95 PTZ00436 60S ribosomal protein 54.8 3E+02 0.0064 31.4 14.0 66 824-899 99-168 (357)
96 KOG2072 Translation initiation 54.0 6.1E+02 0.013 32.9 37.6 43 652-699 659-701 (988)
97 KOG4302 Microtubule-associated 53.6 5.8E+02 0.012 32.5 29.6 119 477-607 118-244 (660)
98 KOG4590 Signal transduction pr 53.3 1.4E+02 0.003 35.6 12.0 8 252-259 296-303 (409)
99 KOG0162 Myosin class I heavy c 51.8 2.1E+02 0.0045 36.3 13.3 8 230-237 1083-1090(1106)
100 KOG1869 Splicing coactivator S 51.3 9.6 0.00021 44.0 2.2 22 940-961 208-229 (425)
101 KOG2888 Putative RNA binding p 50.5 9.8 0.00021 42.9 2.1 13 655-667 172-184 (453)
102 cd09235 V_Alix Middle V-domain 47.6 5.1E+02 0.011 30.1 25.1 214 656-876 87-325 (339)
103 KOG0144 RNA-binding protein CU 44.2 36 0.00077 40.1 5.3 36 270-305 451-486 (510)
104 KOG4822 Predicted nuclear memb 41.6 2.7E+02 0.0059 37.0 12.5 22 53-74 1708-1729(1906)
105 KOG2133 Transcriptional corepr 41.6 9.8E+02 0.021 31.7 17.8 8 201-208 672-679 (1229)
106 KOG2223 Uncharacterized conser 41.0 1.1E+02 0.0024 36.4 8.5 75 799-875 235-332 (586)
107 KOG3600 Thyroid hormone recept 38.6 1.1E+02 0.0024 40.5 8.7 15 494-508 1370-1384(2238)
108 KOG0162 Myosin class I heavy c 38.5 3.1E+02 0.0067 34.9 12.0 6 28-33 937-942 (1106)
109 KOG0940 Ubiquitin protein liga 37.6 32 0.0007 40.2 3.8 32 230-261 115-146 (358)
110 PF07946 DUF1682: Protein of u 37.4 83 0.0018 36.2 7.1 14 864-877 263-276 (321)
111 PF03999 MAP65_ASE1: Microtubu 36.8 50 0.0011 41.5 5.6 16 589-604 142-157 (619)
112 PF04625 DEC-1_N: DEC-1 protei 36.2 2.7E+02 0.0059 31.8 10.3 15 592-606 340-354 (407)
113 KOG4286 Dystrophin-like protei 35.8 13 0.00028 46.3 0.2 29 232-260 353-381 (966)
114 KOG3771 Amphiphysin [Intracell 35.7 3.7E+02 0.0081 32.4 11.9 60 635-699 2-65 (460)
115 KOG4334 Uncharacterized conser 35.5 31 0.00068 41.1 3.2 34 269-302 154-187 (650)
116 KOG1144 Translation initiation 34.2 94 0.002 39.4 7.0 7 996-1002 449-455 (1064)
117 KOG4520 Predicted coiled-coil 33.8 38 0.00082 35.6 3.1 7 958-964 210-216 (238)
118 PF11172 DUF2959: Protein of u 33.4 6.5E+02 0.014 27.2 12.4 57 734-810 18-74 (201)
119 KOG2357 Uncharacterized conser 31.5 1.3E+02 0.0028 35.6 7.2 38 862-899 369-406 (440)
120 KOG4246 Predicted DNA-binding 30.9 3.3E+02 0.0072 35.0 10.8 47 493-539 634-686 (1194)
121 cd07611 BAR_Amphiphysin_I_II T 30.8 7.4E+02 0.016 27.0 14.7 42 655-701 8-49 (211)
122 PF10278 Med19: Mediator of RN 30.2 25 0.00055 36.9 1.2 30 824-853 40-72 (178)
123 PF14643 DUF4455: Domain of un 29.9 1.1E+03 0.024 28.7 25.0 84 637-721 50-133 (473)
124 KOG4848 Extracellular matrix-a 29.9 4E+02 0.0088 28.4 9.7 13 733-745 83-95 (225)
125 KOG4334 Uncharacterized conser 29.7 41 0.00088 40.2 2.9 38 227-264 153-190 (650)
126 TIGR03300 assembly_YfgL outer 29.4 59 0.0013 37.6 4.2 63 237-299 285-347 (377)
127 PF05879 RHD3: Root hair defec 29.2 1.4E+03 0.03 29.7 28.5 31 855-885 610-640 (742)
128 KOG4594 Sequence-specific sing 28.8 9.1E+02 0.02 27.5 13.4 13 71-83 109-121 (354)
129 PRK10263 DNA translocase FtsK; 28.2 1.2E+02 0.0026 41.0 7.0 10 799-808 1292-1301(1355)
130 COG5178 PRP8 U5 snRNP spliceos 27.0 55 0.0012 42.8 3.5 10 271-280 265-274 (2365)
131 KOG0905 Phosphoinositide 3-kin 25.6 3.3E+02 0.0071 36.6 9.7 12 739-750 923-934 (1639)
132 cd08816 CARD_RIG-I_1 Caspase a 25.2 2.2E+02 0.0047 26.6 6.0 15 613-627 4-18 (89)
133 KOG2573 Ribosome biogenesis pr 24.5 57 0.0012 38.2 2.8 10 863-872 421-430 (498)
134 KOG1070 rRNA processing protei 24.4 1.4E+03 0.031 31.7 15.2 24 548-573 1443-1466(1710)
135 PRK10263 DNA translocase FtsK; 24.1 3.8E+02 0.0082 36.7 10.3 6 741-746 1294-1299(1355)
136 PF13025 DUF3886: Protein of u 24.1 2E+02 0.0044 25.8 5.5 20 681-700 41-63 (70)
137 smart00564 PQQ beta-propeller 24.0 71 0.0015 23.1 2.4 22 278-299 12-33 (33)
138 KOG1869 Splicing coactivator S 23.9 19 0.00042 41.7 -1.0 8 950-957 207-214 (425)
139 KOG2150 CCR4-NOT transcription 23.6 6.4E+02 0.014 31.3 11.3 150 514-664 12-206 (575)
140 KOG2932 E3 ubiquitin ligase in 23.4 1.2E+03 0.026 26.9 13.8 6 72-77 283-288 (389)
141 KOG3116 Predicted C3H1-type Zn 23.2 2.9E+02 0.0063 28.3 7.0 115 885-1012 55-176 (177)
142 KOG2072 Translation initiation 23.0 1.8E+03 0.039 28.9 25.9 32 734-765 660-691 (988)
143 KOG1151 Tousled-like protein k 22.6 7.3E+02 0.016 30.1 11.1 48 712-766 475-523 (775)
144 COG3857 AddB ATP-dependent nuc 22.3 2E+03 0.044 29.3 16.5 100 494-628 379-480 (1108)
145 KOG2147 Nucleolar protein invo 22.3 1.8E+03 0.038 28.6 16.6 33 768-806 389-421 (823)
146 PRK11138 outer membrane biogen 22.0 1.1E+02 0.0023 35.9 4.6 66 233-298 296-361 (394)
147 PHA03151 hypothetical protein; 21.9 76 0.0016 33.9 2.9 16 985-1000 224-240 (259)
148 PF15236 CCDC66: Coiled-coil d 21.6 3.6E+02 0.0077 28.1 7.6 36 865-900 52-87 (157)
149 KOG0977 Nuclear envelope prote 21.6 1.6E+03 0.035 27.9 23.9 14 689-702 238-251 (546)
150 PF13360 PQQ_2: PQQ-like domai 21.5 64 0.0014 34.1 2.4 65 233-298 38-102 (238)
151 KOG4286 Dystrophin-like protei 21.5 50 0.0011 41.5 1.7 38 270-307 350-387 (966)
152 KOG1925 Rac1 GTPase effector F 20.5 1.3E+02 0.0028 36.3 4.6 26 690-716 544-569 (817)
153 PTZ00436 60S ribosomal protein 20.2 2.3E+02 0.0051 32.2 6.3 48 694-753 102-149 (357)
154 KOG2223 Uncharacterized conser 20.1 3.8E+02 0.0082 32.2 8.2 42 511-552 220-264 (586)
155 KOG4217 Nuclear receptors of t 20.0 1.5E+03 0.032 27.7 12.9 11 480-490 408-418 (605)
156 PRK11138 outer membrane biogen 20.0 1.4E+02 0.003 34.9 5.0 68 232-300 121-188 (394)
No 1
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=100.00 E-value=5.9e-71 Score=601.03 Aligned_cols=528 Identities=25% Similarity=0.423 Sum_probs=424.2
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCccccccCCCcccchhhcccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHHH
Q 001687 227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR 306 (1029)
Q Consensus 227 ~~~~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~ 306 (1029)
..+.+.|++.+++|||+||||..|+.|+|++|.+++...|..+...+|+++.+.||++||||..|+||+|..|.+.+...
T Consensus 11 ~~~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~KkVe 90 (590)
T COG5104 11 GEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKKVE 90 (590)
T ss_pred ccHHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhccC
Confidence 34467899999999999999999999999999999888887778889999999999999999999999999999976422
Q ss_pred HHHHHhhhcCCCCCCCCCCCCccCCCCCcccCCCCccCCCccchhhccCCcccccccccccCCccccCCCCCCCcccccc
Q 001687 307 EQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSV 386 (1029)
Q Consensus 307 e~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 386 (1029)
.-++. . . +.+|- .+.++.-.+++
T Consensus 91 ~~~eQ----K-~--------~~~S~------------------i~~ngn~~ait-------------------------- 113 (590)
T COG5104 91 PIAEQ----K-H--------DERSM------------------IGGNGNDMAIT-------------------------- 113 (590)
T ss_pred cHHhh----h-h--------HHHHH------------------hccCCCccccc--------------------------
Confidence 11110 0 0 00000 00000000000
Q ss_pred ccccCCCCCcccccCccccccccccccccchhHHHhhhcccccccccccCCCCCCCCCchhhhhhhccccccccchhHHh
Q 001687 387 VANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEK 466 (1029)
Q Consensus 387 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~k~~~~~~~k~~~~~e~k 466 (1029)
++. ...| +.. .+.....|++.+ ++
T Consensus 114 ----~~e-----~~eP--------~~~--~~~~~sQy~~~s------------------------------t~------- 137 (590)
T COG5104 114 ----DHE-----TSEP--------KYL--LGRLMSQYGITS------------------------------TK------- 137 (590)
T ss_pred ----ccc-----cccc--------hhH--HHHHHHhhcchh------------------------------HH-------
Confidence 000 0000 000 000111111110 00
Q ss_pred hhhhhhhhccCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhhcCccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001687 467 TVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRT-LGERKTAFNEYLGQKKKQDAEERRLKL 545 (1029)
Q Consensus 467 ~~~~e~~~~~tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~-~~ERKqlFeeY~~~~~k~E~eekr~~~ 545 (1029)
..+-..|+|+|+.+|+.||++++|+++|+|.++++.+ -|||||.|.+ +.+||.+|++|+.+..+++++++..++
T Consensus 138 ----~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~ 212 (590)
T COG5104 138 ----DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQ 212 (590)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHH
Confidence 1122358999999999999999999999999999999 8999998875 579999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001687 546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE 625 (1029)
Q Consensus 546 kkare~F~~lLee~~~I~~~trW~~a~~~~~~Dprfkav~~e~eRe~lFeeyi~~L~kkEke~~~~~rkka~~ef~~lL~ 625 (1029)
.+.+++|.+||..+..|.+||.|.+|..+|.++|.|+++.++.+.+++|++|++.|-.-+++-.+..+..++.+|..+|.
T Consensus 213 ~k~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr 292 (590)
T COG5104 213 RKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLR 292 (590)
T ss_pred HHHHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999888889999999999999
Q ss_pred hcccccCCCcHHHHHHHhhhhhhhhc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001687 626 SCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLME 699 (1029)
Q Consensus 626 ~~~~I~~~T~W~ev~~~l~~D~r~~~------l~~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~ 699 (1029)
+++ -...++|.-.+-.|..++||.. |+..|.|--|.+|++.|+++.--.....+.+..+.+|++||+|+.||.
T Consensus 293 ~l~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr 371 (590)
T COG5104 293 SLG-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLR 371 (590)
T ss_pred hcC-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 986 4567899977777888888853 567788889999999999988766666677778999999999999999
Q ss_pred HHhhcCccccCCChHHHHHHHhcChhhhhhhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCHHH
Q 001687 700 ADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFED 779 (1029)
Q Consensus 700 e~~~~g~I~~~T~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Veel~~~~~e~K~~i~d~lk~~~i~v~~~wt~ee 779 (1029)
++.-.|+|+..++|+++||+|+|||||++|+ |++||+|||||+|+|-+|+..|...|+.+.+++..++|.++.+-..++
T Consensus 372 ~l~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~vde 450 (590)
T COG5104 372 KLYSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAVDE 450 (590)
T ss_pred HhhhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccchHH
Confidence 9999999999999999999999999999997 899999999999999999999999999999998889998887777777
Q ss_pred HHHHHh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHH-Hhhhc--c-CCCCCCcHHHHH
Q 001687 780 FKASVL-----EDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDE---FFD-LLCSV--K-EISATSTWENCR 847 (1029)
Q Consensus 780 f~~~l~-----ed~r~~~i~~~~lk~iFe~li~r~keKee~e~rk~~R~~~~---F~~-lL~~~--~-~I~~~stWee~k 847 (1029)
+.+.+. .+..+..|+.+++.+|.+.+|.+.-|+-.......||+.+. ++. ||..+ + .-...++|+-+-
T Consensus 451 i~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~t~~~t~k~k~st~D~~~ 530 (590)
T COG5104 451 IFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKPKPSTWDLAS 530 (590)
T ss_pred HHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCcchHHHHH
Confidence 666554 34557888999999999999876655544334444555443 334 44432 2 345679999999
Q ss_pred HHhcCcccccccCCh-hhHHHHHHHHHH
Q 001687 848 QLLEGSQEFSSIGDE-SICRGVFDEFVT 874 (1029)
Q Consensus 848 ~~i~~~~ey~~L~~e-~~r~~~F~e~i~ 874 (1029)
..|...-||++|++| ..|+.+|++|--
T Consensus 531 k~L~Es~E~k~~~DE~N~~Rq~fED~k~ 558 (590)
T COG5104 531 KELGESLEYKALGDEDNIRRQIFEDFKP 558 (590)
T ss_pred HHHhHhHHHHHhcchhHHHHHhhhcCCc
Confidence 999999999999987 567899999865
No 2
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=2.6e-52 Score=464.05 Aligned_cols=344 Identities=28% Similarity=0.522 Sum_probs=279.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001687 476 ANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKM 555 (1029)
Q Consensus 476 ~tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~~~ERKqlFeeY~~~~~k~E~eekr~~~kkare~F~~l 555 (1029)
-..||+...|++||+++||.++++|++.+.+|+.||||.+|.. .+|+++|+.||..+.+.++.+++.+.+.|+++|.+|
T Consensus 239 vplEer~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s-~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kL 317 (617)
T KOG0155|consen 239 VPLEERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNS-GERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKL 317 (617)
T ss_pred CCHHHHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999976 599999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCc
Q 001687 556 LEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQ 635 (1029)
Q Consensus 556 Lee~~~I~~~trW~~a~~~~~~Dprfkav~~e~eRe~lFeeyi~~L~kkEke~~~~~rkka~~ef~~lL~~~~~I~~~T~ 635 (1029)
|.++ .++..+.|+.|..+|.+|+||++|...+||+.+|++||..|+++++++.+..+++...+|..||.+.. |+..+.
T Consensus 318 L~e~-~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~S~ 395 (617)
T KOG0155|consen 318 LAEA-ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRKSK 395 (617)
T ss_pred HHhC-cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhhh
Confidence 9998 68888999999999999999999998899999999999999999999999999999999999999886 889999
Q ss_pred HHHHHHHhhhhhhhhcCCc-hhHHHHHHHHHHHHHHHH------HHHHH-------HHHHHH-------H----HHHH--
Q 001687 636 WRKVQDRLEADERCSRLDK-MDRLEIFQEYLNDLEKEE------EEQRK-------IQKEEL-------S----KTER-- 688 (1029)
Q Consensus 636 W~ev~~~l~~D~r~~~l~~-~DrlelFed~I~~Lekee------eE~kk-------~~k~~~-------r----R~eR-- 688 (1029)
|+++++.|.+++||.+|+. ++|..||.+||..|..+. +.+++ ++++.. + ..+.
T Consensus 396 ws~tk~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k 475 (617)
T KOG0155|consen 396 WSKTKDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQK 475 (617)
T ss_pred hhHHHHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 799999999999986321 10111 111100 0 0011
Q ss_pred --HhHHHHHHHHHHHhhcCccccCCChHHHHHHHhcChhhhhhhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001687 689 --KNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 766 (1029)
Q Consensus 689 --K~Rd~Fk~LL~e~~~~g~I~~~T~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Veel~~~~~e~K~~i~d~lk~ 766 (1029)
.+-+.|++||-++++.. ..+|.+..++|..|++|.+ |.-+......-||.|||..|.++-+++...|.|- .
T Consensus 476 ~~e~~~~y~all~d~irs~----e~sw~e~rrilrkd~r~as-~~~le~~~keklf~dhiksl~~k~re~f~qllde--~ 548 (617)
T KOG0155|consen 476 RGEAEDTYRALLIDLIRST----ENSWHEARRILRKDERYAS-CDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDE--H 548 (617)
T ss_pred HHHHHHHHHHHHHHHHhCc----ccchHHhHHHhhccccccc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 13388999999998754 4589999999999999865 4445667778999999999987777766555442 2
Q ss_pred cccccccCCCHHHHHHHHhhcCCCCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccCCCCCC
Q 001687 767 RKITLSSTWTFEDFKASVLEDATSPPISDVNL--KLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATS 841 (1029)
Q Consensus 767 ~~i~v~~~wt~eef~~~l~ed~r~~~i~~~~l--k~iFe~li~r~keKee~e~rk~~R~~~~F~~lL~~~~~I~~~s 841 (1029)
..|+.++.| -|.+.+|.++..|..|..... +.-|.++ +.+++.-+.+.|+.||++++-|++.+
T Consensus 549 ~~it~~~~w--~e~kkii~e~~t~~k~~ss~rk~~r~f~d~----------~~~~~~~~~d~fr~~l~etk~it~~s 613 (617)
T KOG0155|consen 549 EKITPMMRW--REAKKIIQEEETFVKIASSERKVERDFRDW----------QERRHDHLTDEFREMLSETKIITHKS 613 (617)
T ss_pred hhcchHHHH--HHhhHHHhhhHHHHHHHhhhhhhhccHHHH----------HHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence 357777788 478888877766544433111 1112222 23455667899999999988887654
No 3
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=100.00 E-value=6.9e-54 Score=494.63 Aligned_cols=415 Identities=39% Similarity=0.629 Sum_probs=388.6
Q ss_pred hhccCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001687 473 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDY 552 (1029)
Q Consensus 473 ~~~~tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~~~ERKqlFeeY~~~~~k~E~eekr~~~kkare~F 552 (1029)
+.|++|++|+.+|+.||++++|++.|+|+++++.|++|+||+++.++.+++|+|+.|..++.+.+.++.....++++++|
T Consensus 20 ~~~~~k~~a~~~f~~~lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~ 99 (463)
T KOG0152|consen 20 VRFKTKEEAKRAFKELLRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDF 99 (463)
T ss_pred HHhhccHHhHHHHHHHHhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 001687 553 KKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKA 632 (1029)
Q Consensus 553 ~~lLee~~~I~~~trW~~a~~~~~~Dprfkav~~e~eRe~lFeeyi~~L~kkEke~~~~~rkka~~ef~~lL~~~~~I~~ 632 (1029)
..||.++..+.+++.|.++..+|..+|+|.++... +++.+|++||..|.+++++++.+.+++++.+|..+|..+..+..
T Consensus 100 ~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~ 178 (463)
T KOG0152|consen 100 LQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGL 178 (463)
T ss_pred HHhHhhcccccccccccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccc
Confidence 99999999999999999999999999999998765 99999999999999999998888888999999999998877899
Q ss_pred CCcHHHHHHHhhhhhhhhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccccCC
Q 001687 633 NTQWRKVQDRLEADERCSR-LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKT 711 (1029)
Q Consensus 633 ~T~W~ev~~~l~~D~r~~~-l~~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g~I~~~T 711 (1029)
.++|+.++..+..|++|.. |++.|+|..|++||..+++++.+..+ .+...+|++|++||+|+.||+++++.|+|+++|
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~~~-~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T 257 (463)
T KOG0152|consen 179 DRDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEKEQ-ERKRNKRQERKNRDAFRSLLQELPATGKITSTT 257 (463)
T ss_pred cchHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhhcc-hhhhhhhhhhhhhhhhhhHHHhhcccccccccc
Confidence 9999999999999999998 99999999999999999998877633 336788999999999999999999999999999
Q ss_pred ChHHHHHHHhcChhhhhhhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCHHHHHHHHhhcCCCC
Q 001687 712 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSP 791 (1029)
Q Consensus 712 ~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Veel~~~~~e~K~~i~d~lk~~~i~v~~~wt~eef~~~l~ed~r~~ 791 (1029)
.|.++++.|++|++|..++ |.+||+|+|||+|+|+.|+..+.+.+.+|+++++..+|.+...+++.+|..+|..+..+.
T Consensus 258 ~w~~~~~~i~~~~r~~~~l-n~sgstp~dlf~d~ve~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
T KOG0152|consen 258 GWEDLFPSIKDDPRSANAL-NQSGSTPLDLFEDPVEPLEPRYYEYPPLIKDCLKERQIELSAQTSLQEFNSVLSKDKENE 336 (463)
T ss_pred CCccccchhcCCcchHhhc-CCCCCChhhcccccccccccccccchHHHHHHHHhhcccccchhhHHHhhhhhhhhhccc
Confidence 9999999999999998775 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHhhhccCCCCCCcHHHHHHHhcCcccccccCChhhHHH
Q 001687 792 PISDVNLKLIFDDLLIKVKEKEEKEA----KKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRG 867 (1029)
Q Consensus 792 ~i~~~~lk~iFe~li~r~keKee~e~----rk~~R~~~~F~~lL~~~~~I~~~stWee~k~~i~~~~ey~~L~~e~~r~~ 867 (1029)
.++..+++++|+.|+.+++++++++. ++.++...+|..+|+.+..|.+.++|+.+++++++.++|.+|++++.++.
T Consensus 337 ~~~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~~~~~~~~a~p~~~~s~~~~~~~~e~~~~~ 416 (463)
T KOG0152|consen 337 KVDAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIPKSSTWDSAKPLVEDSEEFSALGSEESRVP 416 (463)
T ss_pred cccHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCchhhccccccChhhhhcCCccccce
Confidence 99999999999999999988765544 46788899999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001687 868 VFDEFVTQLKEQAKDYERKRKEE 890 (1029)
Q Consensus 868 ~F~e~i~~Lkek~~e~er~r~~~ 890 (1029)
+|.+||..|.+.....++.+.++
T Consensus 417 ~~~~~~t~~~~~~~~~~~~~~~~ 439 (463)
T KOG0152|consen 417 GFPDYVTPLVSTQPGSESKRVKQ 439 (463)
T ss_pred eccccccchhhcccccccccccc
Confidence 99999999998877666655443
No 4
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=4.7e-36 Score=334.65 Aligned_cols=276 Identities=25% Similarity=0.422 Sum_probs=232.7
Q ss_pred ccccCCCCCCCCCchhhh--hhhccccccc-cchhHHhhhhhhhhhcc----------CHHHHHHHHHHHHHhCCCCCCC
Q 001687 432 SDLVGASDKVPPPVTEET--RKDAVRGEKV-SDALEEKTVEQEHFAYA----------NKLEAKNAFKALLESANVGSDW 498 (1029)
Q Consensus 432 ~~~~~~~~~~~~~~~ee~--k~~~~~~~k~-~~~~e~k~~~~e~~~~~----------tkeEAk~aFk~LL~e~~V~s~~ 498 (1029)
|..|+.+.|++++.+||. .+.+.+..+. ....+++++|++++.-. -..+|++.|.+||.++.++..+
T Consensus 248 FkEMLkERgVsafStWEkel~KivfDpR~~~l~s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~~~n~rs 327 (617)
T KOG0155|consen 248 FKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNSGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEAELNGRS 327 (617)
T ss_pred HHHHHHhcCCcccchHHHhhhhccCCcceeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCccc
Confidence 445778999999999965 4555555555 56669999999887521 1237999999999999999999
Q ss_pred cHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccc
Q 001687 499 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFEND 578 (1029)
Q Consensus 499 tWe~a~~~i~~DpRy~al~~~~ERKqlFeeY~~~~~k~E~eekr~~~kkare~F~~lLee~~~I~~~trW~~a~~~~~~D 578 (1029)
+|..+.+++.+|+||.+|....+|..+||+|+..+++.++++.+.+.++++.+|..||.+.. |+..+.|++++..+.++
T Consensus 328 ~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~S~ws~tk~~le~e 406 (617)
T KOG0155|consen 328 SYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRKSKWSKTKDTLEDE 406 (617)
T ss_pred chHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhhhhhHHHHHhccc
Confidence 99999999999999999998899999999999999999999999999999999999999974 99999999999999999
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHH--------------------HH---------------HHHHHHHHHHHHHHHHH
Q 001687 579 ERFKALERERDRKDMFDDHLDELKQK--------------------ER---------------AKAQEERKRNIIEYRKF 623 (1029)
Q Consensus 579 prfkav~~e~eRe~lFeeyi~~L~kk--------------------Ek---------------e~~~~~rkka~~ef~~l 623 (1029)
+||.+|.+.+.|+.||.+||..|... ++ +..+..+..+.+.|++|
T Consensus 407 ery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~al 486 (617)
T KOG0155|consen 407 ERYIALDSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRAL 486 (617)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998889999999999988532 00 11111233456789999
Q ss_pred HhhcccccCCCcHHHHHHHhhhhhhhhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001687 624 LESCDFIKANTQWRKVQDRLEADERCSRL---DKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEA 700 (1029)
Q Consensus 624 L~~~~~I~~~T~W~ev~~~l~~D~r~~~l---~~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~e 700 (1029)
|-.+. -.....|.+...+|..|+||.+. ++.+...||.|||..|++ |.|++|..||++
T Consensus 487 l~d~i-rs~e~sw~e~rrilrkd~r~as~~~le~~~keklf~dhiksl~~------------------k~re~f~qllde 547 (617)
T KOG0155|consen 487 LIDLI-RSTENSWHEARRILRKDERYASCDMLEKTRKEKLFDDHIKSLER------------------KRREAFFQLLDE 547 (617)
T ss_pred HHHHH-hCcccchHHhHHHhhcccccccCcccchHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHh
Confidence 97652 23567999999999999999764 455778899999988744 568999999999
Q ss_pred HhhcCccccCCChHHHHHHHhcChhhhhhh
Q 001687 701 DVALGTLTAKTNWRDYCIKVKDSPPYMAVA 730 (1029)
Q Consensus 701 ~~~~g~I~~~T~W~d~~~~ikdd~rf~~l~ 730 (1029)
+ ..|+++++|.|...+|..+++|+.++
T Consensus 548 ~---~~it~~~~w~e~kkii~e~~t~~k~~ 574 (617)
T KOG0155|consen 548 H---EKITPMMRWREAKKIIQEEETFVKIA 574 (617)
T ss_pred h---hhcchHHHHHHhhHHHhhhHHHHHHH
Confidence 7 47999999999999999999999886
No 5
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.91 E-value=9.5e-23 Score=224.32 Aligned_cols=196 Identities=16% Similarity=0.194 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhC-CCCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001687 481 AKNAFKALLESA-NVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEES 559 (1029)
Q Consensus 481 Ak~aFk~LL~e~-~V~s~~tWe~a~~~i~~DpRy~al~~~~ERKqlFeeY~~~~~k~E~eekr~~~kkare~F~~lLee~ 559 (1029)
-+.+|.+||..+ .|.+++.|-.+.+.|...|-|.++.+..+++|+|.+|+..+...|+.-++.+...|...|..+|...
T Consensus 215 ~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l 294 (590)
T COG5104 215 YINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSL 294 (590)
T ss_pred HHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhc
Confidence 578999999964 7999999999999999999999999999999999999999999999988888899999999999975
Q ss_pred hcCCCCCCHHHHHHHhccchhhhccC-----ChHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Q 001687 560 VELTSSTRWSKAVTMFENDERFKALE-----RERDRKDMFDDHLDELKQKER-------AKAQEERKRNIIEYRKFLESC 627 (1029)
Q Consensus 560 ~~I~~~trW~~a~~~~~~Dprfkav~-----~e~eRe~lFeeyi~~L~kkEk-------e~~~~~rkka~~ef~~lL~~~ 627 (1029)
...++++|.-+.-.|..++||.+.. +-.+.+-.|..|+..|+++-. .+.....+.++++|+.||+..
T Consensus 295 -~~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l 373 (590)
T COG5104 295 -GSETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKL 373 (590)
T ss_pred -CcccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 4667899998888899999998542 223444456666666655421 112223456899999999864
Q ss_pred ---ccccCCCcHHHHHHHhhhhhhhhcCC---chhHHHHHHHHHHHHHHHHHHHHH
Q 001687 628 ---DFIKANTQWRKVQDRLEADERCSRLD---KMDRLEIFQEYLNDLEKEEEEQRK 677 (1029)
Q Consensus 628 ---~~I~~~T~W~ev~~~l~~D~r~~~l~---~~DrlelFed~I~~LekeeeE~kk 677 (1029)
+.|+..+.|.+++.+|.+||||.+|. ++.+|+||.|+|.+|+.-+.+.++
T Consensus 374 ~~~~ki~~R~kwk~~yp~iKddprfLnlLGr~gsspldlf~D~ivDlenmy~~~r~ 429 (590)
T COG5104 374 YSEGKIYYRMKWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENMYGFARR 429 (590)
T ss_pred hhhhhhhhhhhhhhhcccccCCHHHHHHhccCCCChHHHHHHHHHhHHHHHHHHHH
Confidence 56888999999999999999999986 478999999999999987766544
No 6
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.70 E-value=3.2e-17 Score=190.80 Aligned_cols=352 Identities=19% Similarity=0.297 Sum_probs=263.2
Q ss_pred CCCCCCCCCchhhhhhhcccccc----ccchhHHhhhhhhhhhcc----------CHHHHHHHHHHHHHhC-CCCCCCcH
Q 001687 436 GASDKVPPPVTEETRKDAVRGEK----VSDALEEKTVEQEHFAYA----------NKLEAKNAFKALLESA-NVGSDWTW 500 (1029)
Q Consensus 436 ~~~~~~~~~~~ee~k~~~~~~~k----~~~~~e~k~~~~e~~~~~----------tkeEAk~aFk~LL~e~-~V~s~~tW 500 (1029)
+-+.++.+.++|+.-.......+ ...+.+.++.++.+.... ....++..|..||.++ .+.+...|
T Consensus 36 lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~~~l~e~~~~~~~~~~ 115 (463)
T KOG0152|consen 36 LRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFLQMLQEESKYKSSTEW 115 (463)
T ss_pred HhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhHhhcccccccccc
Confidence 34556677777765444444443 256677888887766541 1236899999999875 78999999
Q ss_pred HHHHHHhhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchh
Q 001687 501 DQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER 580 (1029)
Q Consensus 501 e~a~~~i~~DpRy~al~~~~ERKqlFeeY~~~~~k~E~eekr~~~kkare~F~~lLee~~~I~~~trW~~a~~~~~~Dpr 580 (1029)
.++...|..||+|.++... +++.+|+.|+.++.+.+++++...+++...+|..+|..+..+...++|..+...+..|++
T Consensus 116 ~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 194 (463)
T KOG0152|consen 116 KTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGLDRDWRRAQGRLTEDSG 194 (463)
T ss_pred cccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccccchHHHHhhhhhcccc
Confidence 9999999999999999764 899999999999999999888877788999999999988889999999999999999999
Q ss_pred hhc-cCChHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhcc---cccCCCcHHHHHHHhhhhhhhh
Q 001687 581 FKA-LERERDRKDMFDDHLDELKQKERAKAQE------ERKRNIIEYRKFLESCD---FIKANTQWRKVQDRLEADERCS 650 (1029)
Q Consensus 581 fka-v~~e~eRe~lFeeyi~~L~kkEke~~~~------~rkka~~ef~~lL~~~~---~I~~~T~W~ev~~~l~~D~r~~ 650 (1029)
|.. +.++ ++...|++||..+.+++-++.+. ..+++++.|+.||.++. .|++.|.|.+++..+..|++|.
T Consensus 195 ~~~~ldke-d~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T~w~~~~~~i~~~~r~~ 273 (463)
T KOG0152|consen 195 FSEDLDKE-DALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQELPATGKITSTTGWEDLFPSIKDDPRSA 273 (463)
T ss_pred cccccchH-HhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhhccccccccccCCccccchhcCCcchH
Confidence 998 7654 99999999999998775543222 23567888999999864 7999999999999999999998
Q ss_pred cCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccccCCChHHHHHHHhcChhhh
Q 001687 651 RLD---KMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYM 727 (1029)
Q Consensus 651 ~l~---~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g~I~~~T~W~d~~~~ikdd~rf~ 727 (1029)
++. ++.++++|++++..|+...-+...+.+ +.++.+. ..+.+.+...+|...|..+..|.
T Consensus 274 ~~ln~sgstp~dlf~d~ve~l~~~~~~~~~~i~-----------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
T KOG0152|consen 274 NALNQSGSTPLDLFEDPVEPLEPRYYEYPPLIK-----------DCLKERQ------IELSAQTSLQEFNSVLSKDKENE 336 (463)
T ss_pred hhcCCCCCChhhcccccccccccccccchHHHH-----------HHHHhhc------ccccchhhHHHhhhhhhhhhccc
Confidence 765 467899999999999875555443332 2222222 23455566677777777777665
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHhHHHHH-----------HHHHHHHhc-ccccccCCCHHHHHHHHhhcCCCCCCCh
Q 001687 728 AVASNTSGSTPKDLFEDVVEELQKQFQEDKT-----------RIKDAVKLR-KITLSSTWTFEDFKASVLEDATSPPISD 795 (1029)
Q Consensus 728 ~l~~g~~gStpldLF~D~Veel~~~~~e~K~-----------~i~d~lk~~-~i~v~~~wt~eef~~~l~ed~r~~~i~~ 795 (1029)
.+ +.-....+|..+++.......+.++ .+..+|+.. +|.+.++| +...+++.....|.+|..
T Consensus 337 ~~----~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~~~~~~--~~a~p~~~~s~~~~~~~~ 410 (463)
T KOG0152|consen 337 KV----DAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIPKSSTW--DSAKPLVEDSEEFSALGS 410 (463)
T ss_pred cc----cHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCc--hhhccccccChhhhhcCC
Confidence 43 3334455666666655433222221 234456554 47777787 789999999999988844
Q ss_pred -hhHHHHHHHHHHHHHHH
Q 001687 796 -VNLKLIFDDLLIKVKEK 812 (1029)
Q Consensus 796 -~~lk~iFe~li~r~keK 812 (1029)
+++..+|..++..+.+.
T Consensus 411 e~~~~~~~~~~~t~~~~~ 428 (463)
T KOG0152|consen 411 EESRVPGFPDYVTPLVST 428 (463)
T ss_pred ccccceeccccccchhhc
Confidence 67788899988877553
No 7
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.15 E-value=5.1e-11 Score=98.49 Aligned_cols=50 Identities=32% Similarity=0.616 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHhhcCcccccc-CChHHHHHHHHHH
Q 001687 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL-RTLGERKTAFNEY 529 (1029)
Q Consensus 480 EAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al-~~~~ERKqlFeeY 529 (1029)
+|+++|++||++++|+++++|+.+++.|.+||||.+| .+..+|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHKITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTTS-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999 8889999999998
No 8
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.03 E-value=3e-10 Score=95.31 Aligned_cols=52 Identities=42% Similarity=0.615 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCCCC-CCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHH
Q 001687 480 EAKNAFKALLESANVG-SDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLG 531 (1029)
Q Consensus 480 EAk~aFk~LL~e~~V~-s~~tWe~a~~~i~~DpRy~al~~~~ERKqlFeeY~~ 531 (1029)
+|+++|+.||++.++. ++++|+.+.++|.+||||.+|.+..+|+++|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 6889999999999876 999999999999999999999999999999999996
No 9
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=98.91 E-value=2.5e-09 Score=88.46 Aligned_cols=50 Identities=30% Similarity=0.688 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcc-CChHHHHHHHHHH
Q 001687 547 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL-ERERDRKDMFDDH 597 (1029)
Q Consensus 547 kare~F~~lLee~~~I~~~trW~~a~~~~~~Dprfkav-~~e~eRe~lFeey 597 (1029)
+|+++|++||.++. |+++|+|.++..+|.+||||.+| .+..+|++||++|
T Consensus 1 ~a~~~F~~lL~e~~-i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK-ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT-S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 58899999999986 99999999999999999999999 7889999999998
No 10
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=98.86 E-value=3.8e-09 Score=88.62 Aligned_cols=53 Identities=38% Similarity=0.756 Sum_probs=50.2
Q ss_pred HhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHH
Q 001687 547 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 599 (1029)
Q Consensus 547 kare~F~~lLee~~~I~~~trW~~a~~~~~~Dprfkav~~e~eRe~lFeeyi~ 599 (1029)
+++++|+.||.++..++++++|.++..+|.+||||.+|.+..+|++||++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 58899999999997788999999999999999999999999999999999996
No 11
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.52 E-value=5.6e-08 Score=72.13 Aligned_cols=28 Identities=43% Similarity=1.013 Sum_probs=26.2
Q ss_pred CCcEEEEcCC-CCeeeeccCccccccCCC
Q 001687 231 TDWKEHTSAD-GRRYYFNKRTRVSTWDKP 258 (1029)
Q Consensus 231 ~~W~e~~d~~-Gr~YYyN~~T~~stWe~P 258 (1029)
.+|+++.|++ |++||||..|++|+|++|
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 5699999986 999999999999999998
No 12
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.47 E-value=1.3e-07 Score=70.19 Aligned_cols=30 Identities=47% Similarity=1.080 Sum_probs=27.3
Q ss_pred CCCCcEEEECCC-CCeEEEeCCCCeeeccCC
Q 001687 270 ASTDWKEFTSPD-GRKYYYNKVTKQSKWSLP 299 (1029)
Q Consensus 270 ~~~~W~e~~~~~-Gr~YyyN~~T~es~We~P 299 (1029)
++.+|.++.|.+ |++||||..|++|+|+.|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 467899999875 999999999999999988
No 13
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.36 E-value=3.6e-07 Score=68.10 Aligned_cols=30 Identities=40% Similarity=1.004 Sum_probs=28.2
Q ss_pred CCCcEEEEcCCCCeeeeccCccccccCCCc
Q 001687 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (1029)
Q Consensus 230 ~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~ 259 (1029)
+.+|+++.|.+|++||||..|++|+|++|.
T Consensus 2 p~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 368999999999999999999999999996
No 14
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.35 E-value=3.7e-07 Score=67.33 Aligned_cols=29 Identities=38% Similarity=0.955 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCCeeeeccCccccccCCCc
Q 001687 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPF 259 (1029)
Q Consensus 231 ~~W~e~~d~~Gr~YYyN~~T~~stWe~P~ 259 (1029)
.+|+.+.|.+|++||||..|++|+|++|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 57999999999999999999999999996
No 15
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=98.29 E-value=8.3e-07 Score=92.22 Aligned_cols=69 Identities=28% Similarity=0.691 Sum_probs=61.3
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCccccccCCCcccchhhcccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001687 227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (1029)
Q Consensus 227 ~~~~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (1029)
.+.+.+|..-.+-.||.||.++.|..|.|.+|. |+..++.+|+.+++..--+||||..+|.++.+.|..
T Consensus 92 lPLPpgWav~~T~~grkYYIDHn~~tTHW~HPl------erEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~ 160 (271)
T KOG1891|consen 92 LPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPL------EREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCI 160 (271)
T ss_pred CCCCCCcceeeEecCceeEeecCCCcccccChh------hhccCCcchhhccccccceeeeecccchhhhcCCCC
Confidence 445678999999999999999999999999995 445688999999998888999999999999998854
No 16
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.25 E-value=1.1e-06 Score=65.44 Aligned_cols=31 Identities=45% Similarity=1.017 Sum_probs=28.9
Q ss_pred CCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001687 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (1029)
Q Consensus 270 ~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (1029)
++.+|.++.|.+|+.||||+.|++|+|+.|.
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 3679999999999999999999999999995
No 17
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.11 E-value=3.3e-06 Score=62.29 Aligned_cols=30 Identities=47% Similarity=0.988 Sum_probs=28.0
Q ss_pred CCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001687 271 STDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (1029)
Q Consensus 271 ~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (1029)
+.+|....|.+|++||||..|++|+|+.|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 368999999999999999999999999995
No 18
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.09 E-value=1.8e-05 Score=94.57 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=20.6
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 001687 579 ERFKALERERDRKDMFDDHLDELKQKERAKAQE-ERKRNIIEYRKFLES 626 (1029)
Q Consensus 579 prfkav~~e~eRe~lFeeyi~~L~kkEke~~~~-~rkka~~ef~~lL~~ 626 (1029)
||..+|. -+--|.|.|.+++-.--.-... +.-++-+.|..||+-
T Consensus 779 pRL~~il----FKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeL 823 (1102)
T KOG1924|consen 779 PRLSAIL----FKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLEL 823 (1102)
T ss_pred hhHHHHH----HHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4554442 3445777777765431110000 112344567777763
No 19
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=98.05 E-value=0.00015 Score=88.56 Aligned_cols=230 Identities=20% Similarity=0.354 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHhhcCccccccCCh-HHHH--HHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Q 001687 481 AKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTL-GERK--TAFNEYLGQKKKQDAEERRL-KLKKARDDYKKML 556 (1029)
Q Consensus 481 Ak~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~~-~ERK--qlFeeY~~~~~k~E~eekr~-~~kkare~F~~lL 556 (1029)
|+..|-.||... |.-.+.|.++..+|-..|.|.-.-++ +-|| .+|+.||.+++.+....++. -.-..-++|..||
T Consensus 54 ~k~~f~~lvs~~-v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~l 132 (1100)
T KOG4271|consen 54 AKDKFETLVSQA-VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVLL 132 (1100)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788898888643 33333499999999999999854332 4454 59999999998776655533 3445668888888
Q ss_pred HHhhcCCCCCCHHHHHHHhccchhhhc--c-------------------------CChHHHHHHHHHHHHHHHHHHHHHH
Q 001687 557 EESVELTSSTRWSKAVTMFENDERFKA--L-------------------------ERERDRKDMFDDHLDELKQKERAKA 609 (1029)
Q Consensus 557 ee~~~I~~~trW~~a~~~~~~Dprfka--v-------------------------~~e~eRe~lFeeyi~~L~kkEke~~ 609 (1029)
....+|. .-|.+++++.+..|.|.- | ...-+-.++|+.|+..|....
T Consensus 133 ~~ld~~e--~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r---- 206 (1100)
T KOG4271|consen 133 PNLDEIE--HLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNER---- 206 (1100)
T ss_pred ccHHHHH--HHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhh----
Confidence 7654454 456688887766665541 1 011244778888877776532
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcHHHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001687 610 QEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERK 689 (1029)
Q Consensus 610 ~~~rkka~~ef~~lL~~~~~I~~~T~W~ev~~~l~~D~r~~~l~~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK 689 (1029)
.+-..+.+|...|++..+|+..--|.++...|+++.-|+.+....-.++|-.|..+|-. |
T Consensus 207 --~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~~qklte~v~t~vy~r~qk~i~e------------------k 266 (1100)
T KOG4271|consen 207 --KRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDFYQKLTESVYTDVYGRHQKQIIE------------------K 266 (1100)
T ss_pred --hhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhHHHhcccceeeccchHHHHHHHH------------------H
Confidence 22345678999999999999999999999999999999999988877888766654422 5
Q ss_pred hHHHHHHHHHHHhhcCccccCCChHHHHHHHhcChhhhhhhcCCCCCChHHHHHHHHHHHHHHhHHHHH
Q 001687 690 NRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKT 758 (1029)
Q Consensus 690 ~Rd~Fk~LL~e~~~~g~I~~~T~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Veel~~~~~e~K~ 758 (1029)
++..|.++|.++ .+++..+..| +.+-+.+.+--.|+.++. .+|...+.
T Consensus 267 ak~~~qE~l~e~------------s~Lf~d~~~~--------a~~fsdKmeti~d~le~e-~rye~~~~ 314 (1100)
T KOG4271|consen 267 AKEEFQELLLEY------------SELFYDLELD--------AKPFSDKMETIQDVLEEE-ARYEAALK 314 (1100)
T ss_pred HHHHHHHHHHHH------------hhhhhhhhhc--------cccccchhHHHHHHHHhH-HHHHHHHH
Confidence 566788888763 3333333222 345566677777766643 35555443
No 20
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=97.98 E-value=0.00024 Score=86.96 Aligned_cols=190 Identities=19% Similarity=0.401 Sum_probs=133.5
Q ss_pred HhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhc---cCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001687 547 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKA---LERERDRKDMFDDHLDELKQKERAKAQEER-KRNIIEYRK 622 (1029)
Q Consensus 547 kare~F~~lLee~~~I~~~trW~~a~~~~~~Dprfka---v~~e~eRe~lFeeyi~~L~kkEke~~~~~r-kka~~ef~~ 622 (1029)
-|+..|..||... +...+.|..+...|.+.|.|.. |...+--.++|+-||.+|+.......++.- -+--..|..
T Consensus 53 ~~k~~f~~lvs~~--v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~ 130 (1100)
T KOG4271|consen 53 TAKDKFETLVSQA--VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQV 130 (1100)
T ss_pred hHHHHHHHHHHHH--hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999875 4455669999999999999873 444566788999999999987665443332 123467777
Q ss_pred HHhhcccccCCCcHHHHHHHhhhhhhhhc----------------------------CCchhHHHHHHHHHHHHHHHHHH
Q 001687 623 FLESCDFIKANTQWRKVQDRLEADERCSR----------------------------LDKMDRLEIFQEYLNDLEKEEEE 674 (1029)
Q Consensus 623 lL~~~~~I~~~T~W~ev~~~l~~D~r~~~----------------------------l~~~DrlelFed~I~~LekeeeE 674 (1029)
||-..+.| ..-|.++.++++..+.|.. |+-.....+|+.|+..|..+
T Consensus 131 ~l~~ld~~--e~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~--- 205 (1100)
T KOG4271|consen 131 LLPNLDEI--EHLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNE--- 205 (1100)
T ss_pred hcccHHHH--HHHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhh---
Confidence 87766544 4567788888776665521 11224567888877665432
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccccCCChHHHHHHHhcChhhhhhhcCCCCCChHHHH----HHHHHHHH
Q 001687 675 QRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLF----EDVVEELQ 750 (1029)
Q Consensus 675 ~kk~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g~I~~~T~W~d~~~~ikdd~rf~~l~~g~~gStpldLF----~D~Veel~ 750 (1029)
++++ ..|.+|+.+|++. .-|+.+-.|.+..+.|.++..|.-+ ..+.-.+.| .++++..+
T Consensus 206 r~~i----------~~~~~fke~l~e~---~~itpg~P~eea~~~~~n~d~~qkl----te~v~t~vy~r~qk~i~ekak 268 (1100)
T KOG4271|consen 206 RKRI----------EMRRAFKENLEES---PFITPGKPWEEARSFIMNEDFYQKL----TESVYTDVYGRHQKQIIEKAK 268 (1100)
T ss_pred hhhH----------HHHHHHHHhhhcC---CccCCCCCHHHhhchhhhhhHHHhc----ccceeeccchHHHHHHHHHHH
Confidence 2221 3578999999985 5899999999999999999888765 344555677 77777777
Q ss_pred HHhHHHHHHH
Q 001687 751 KQFQEDKTRI 760 (1029)
Q Consensus 751 ~~~~e~K~~i 760 (1029)
+++.+.+..+
T Consensus 269 ~~~qE~l~e~ 278 (1100)
T KOG4271|consen 269 EEFQELLLEY 278 (1100)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 21
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00025 Score=86.49 Aligned_cols=16 Identities=6% Similarity=0.445 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001687 867 GVFDEFVTQLKEQAKD 882 (1029)
Q Consensus 867 ~~F~e~i~~Lkek~~e 882 (1029)
.-|.+|+-.|+.+..+
T Consensus 989 ~sY~dyL~~~H~ki~~ 1004 (1007)
T KOG1984|consen 989 SSYVDYLCELHKKIQQ 1004 (1007)
T ss_pred cccchHHHHHHHHHHh
Confidence 4477888888777664
No 22
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.71 E-value=0.00015 Score=86.85 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=9.3
Q ss_pred CCCeeeccCChHHHHH
Q 001687 290 VTKQSKWSLPDELKLA 305 (1029)
Q Consensus 290 ~T~es~We~P~~~~~~ 305 (1029)
.++|-..+-++.|..+
T Consensus 647 kv~Edk~en~dlfakL 662 (1102)
T KOG1924|consen 647 KVNEDKLENDDLFAKL 662 (1102)
T ss_pred ecchhhccchHHHHHH
Confidence 3455566666666654
No 23
>PHA03247 large tegument protein UL36; Provisional
Probab=97.50 E-value=0.019 Score=77.29 Aligned_cols=11 Identities=0% Similarity=-0.475 Sum_probs=5.6
Q ss_pred CCCCCCcEEEE
Q 001687 227 EGVQTDWKEHT 237 (1029)
Q Consensus 227 ~~~~~~W~e~~ 237 (1029)
....++|.--.
T Consensus 2849 ~~~~~g~~~~~ 2859 (3151)
T PHA03247 2849 SLPLGGSVAPG 2859 (3151)
T ss_pred CCCCCCccCCC
Confidence 34456775433
No 24
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.017 Score=72.94 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=5.1
Q ss_pred CChHHHHHHH
Q 001687 298 LPDELKLARE 307 (1029)
Q Consensus 298 ~P~~~~~~~e 307 (1029)
.|+++..++.
T Consensus 944 ~P~~~~~i~~ 953 (1049)
T KOG0307|consen 944 IPEELQIIET 953 (1049)
T ss_pred CchHHHHHHH
Confidence 4555555443
No 25
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.011 Score=72.83 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 001687 587 ERDRKDMFDDHLDELKQK 604 (1029)
Q Consensus 587 e~eRe~lFeeyi~~L~kk 604 (1029)
+.|...|++|......++
T Consensus 640 ~~D~~rl~nDL~~~vtk~ 657 (1007)
T KOG1984|consen 640 LTDGPRLLNDLVRNVTKK 657 (1007)
T ss_pred cccHHHHHHHHHHhcccc
Confidence 456777777777766543
No 26
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00011 Score=72.44 Aligned_cols=33 Identities=36% Similarity=0.840 Sum_probs=29.7
Q ss_pred CCCCcEEEEcCC-CCeeeeccCccccccCCCccc
Q 001687 229 VQTDWKEHTSAD-GRRYYFNKRTRVSTWDKPFEL 261 (1029)
Q Consensus 229 ~~~~W~e~~d~~-Gr~YYyN~~T~~stWe~P~~~ 261 (1029)
.+.+|+..++-. ||+||||+.|++++||.|.+.
T Consensus 7 LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 7 LPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred CCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 357899999975 999999999999999999875
No 27
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0001 Score=72.56 Aligned_cols=33 Identities=33% Similarity=0.782 Sum_probs=30.2
Q ss_pred CCCCCcEEEEC-CCCCeEEEeCCCCeeeccCChH
Q 001687 269 DASTDWKEFTS-PDGRKYYYNKVTKQSKWSLPDE 301 (1029)
Q Consensus 269 ~~~~~W~e~~~-~~Gr~YyyN~~T~es~We~P~~ 301 (1029)
.++.+|+...+ ..||+||||+.|++|+||.|..
T Consensus 6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~ 39 (163)
T KOG3259|consen 6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSG 39 (163)
T ss_pred cCCchhheeccccCCCcceeccccchhhccCCCc
Confidence 47889999998 6999999999999999999965
No 28
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.24 E-value=0.0053 Score=68.17 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCC
Q 001687 134 SYPPGLGGLGRP 145 (1029)
Q Consensus 134 ~~~p~~g~~gp~ 145 (1029)
+.|||+|+|.|.
T Consensus 303 gppPga~pPaph 314 (498)
T KOG4849|consen 303 GPPPGAGPPAPH 314 (498)
T ss_pred CCCCCCCCCCcc
Confidence 444555554443
No 29
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.81 E-value=0.03 Score=62.44 Aligned_cols=6 Identities=50% Similarity=1.282 Sum_probs=3.0
Q ss_pred CCCCCC
Q 001687 140 GGLGRP 145 (1029)
Q Consensus 140 g~~gp~ 145 (1029)
|.-||+
T Consensus 326 ~s~Gpp 331 (498)
T KOG4849|consen 326 GSMGPP 331 (498)
T ss_pred CcCCCC
Confidence 444555
No 30
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=96.60 E-value=0.029 Score=59.56 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 001687 128 NVQALSSYPPGLGGLGRP 145 (1029)
Q Consensus 128 ~~~~p~~~~p~~g~~gp~ 145 (1029)
+.++|+-|||+.|.||+-
T Consensus 167 p~~~pgv~mp~~g~pg~~ 184 (341)
T KOG2893|consen 167 PAPAPGVYMPPPGMPGAY 184 (341)
T ss_pred CCCCCccccCCCCCCCCC
Confidence 344555566655555543
No 31
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.38 E-value=0.0035 Score=74.13 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhhh
Q 001687 871 EFVTQLKEQAKDYERKR--K-EEKAKREKEREERDRRKLKQ 908 (1029)
Q Consensus 871 e~i~~Lkek~~e~er~r--~-~~~~~~~~~~e~~~~~~~~~ 908 (1029)
+....-+++...+|++| . +++..|+-..|+...++++-
T Consensus 639 KLaqe~k~k~lq~e~~R~~~l~~et~K~~~~e~E~~s~~e~ 679 (878)
T KOG1847|consen 639 KLAQEGKSKRLQKENYRSRSLRDETGKMEQGEEEESSMDEV 679 (878)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhccccccchhhcccccc
Confidence 33334444444444443 2 33344444444444444433
No 32
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.0077 Score=64.37 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCcc
Q 001687 972 KNPHRHNSDRKKPRRLASTPESEN 995 (1029)
Q Consensus 972 k~~~~~~~~~k~~r~~~~~~~s~~ 995 (1029)
+++++.+++|+.+|.|+++++++.
T Consensus 247 ~~~~~~krrr~~r~~~~~~~~s~~ 270 (306)
T KOG2985|consen 247 RKSRKEKRRRRSRRNHSDDSDSES 270 (306)
T ss_pred hhhHhHHHhhhhccccCCcchhhh
Confidence 355666777777788888777766
No 33
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.0074 Score=64.48 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=18.1
Q ss_pred cCCCCcccccccccCCCCCCCChhhhccCC
Q 001687 943 RSGKDNDKKHRKRHQSAHDSLDENEKDRSK 972 (1029)
Q Consensus 943 ~~~k~~~~k~rkr~~s~~~~~~~~~~~~~k 972 (1029)
+.++-+++|+|+|..|.++|||.++.++.+
T Consensus 175 ~t~s~rKkkkRrrd~SdssSDS~~~~~r~r 204 (306)
T KOG2985|consen 175 KTSSVRKKKKRRRDESDSSSDSGDRKRRRR 204 (306)
T ss_pred cccchhhhhhhccccccccccccchhhhhh
Confidence 344445667777777777777755554443
No 34
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.35 Score=59.93 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 001687 863 SICRGVFDEFVTQLKEQA 880 (1029)
Q Consensus 863 ~~r~~~F~e~i~~Lkek~ 880 (1029)
.+.-.-|-+|+..||.+-
T Consensus 868 s~~~~SY~efLq~lk~qv 885 (887)
T KOG1985|consen 868 SENSPSYYEFLQHLKAQV 885 (887)
T ss_pred hcCcHHHHHHHHHHHHHh
Confidence 444455777888887653
No 35
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=1.8 Score=55.52 Aligned_cols=6 Identities=50% Similarity=0.473 Sum_probs=2.9
Q ss_pred CCCccc
Q 001687 256 DKPFEL 261 (1029)
Q Consensus 256 e~P~~~ 261 (1029)
..|.++
T Consensus 943 ~~P~~~ 948 (1049)
T KOG0307|consen 943 PIPEEL 948 (1049)
T ss_pred CCchHH
Confidence 355544
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.82 E-value=1.5 Score=55.63 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc-----------cccCCCcHHHHHHHhhh
Q 001687 609 AQEERKRNIIEYRKFLESCD-----------FIKANTQWRKVQDRLEA 645 (1029)
Q Consensus 609 ~~~~rkka~~ef~~lL~~~~-----------~I~~~T~W~ev~~~l~~ 645 (1029)
++....+|++-|.+.|+... .+-..-.|.++.+.|..
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 34455678888888887541 12345688877777643
No 37
>PHA03378 EBNA-3B; Provisional
Probab=94.40 E-value=1.9 Score=52.44 Aligned_cols=6 Identities=33% Similarity=0.539 Sum_probs=2.3
Q ss_pred CCCCCC
Q 001687 28 PRGFGP 33 (1029)
Q Consensus 28 pq~f~~ 33 (1029)
|-.|..
T Consensus 640 p~~f~~ 645 (991)
T PHA03378 640 PITFNV 645 (991)
T ss_pred cccccc
Confidence 334433
No 38
>PHA03378 EBNA-3B; Provisional
Probab=93.85 E-value=1.2 Score=54.01 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.7
Q ss_pred CCCCCC
Q 001687 182 ISAGGQ 187 (1029)
Q Consensus 182 ~~~~~~ 187 (1029)
+.+||+
T Consensus 813 ~~~gq~ 818 (991)
T PHA03378 813 AAPGQQ 818 (991)
T ss_pred CCcccc
Confidence 444444
No 39
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=93.75 E-value=0.15 Score=61.76 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=12.4
Q ss_pred CCCCCCcCCCCCCCcchhhhhccccc
Q 001687 980 DRKKPRRLASTPESENESRHKRHRRD 1005 (1029)
Q Consensus 980 ~~k~~r~~~~~~~s~~~~~~~r~~~~ 1005 (1029)
+-|+++.++++-++|...|-+-+.||
T Consensus 845 rdRsR~~k~ssr~rd~~drs~~RdRd 870 (877)
T KOG0151|consen 845 RDRSRSDKSSSRDRDRRDRSRERDRD 870 (877)
T ss_pred cccccccccccccccccccCcccchh
Confidence 33344445555566654444433344
No 40
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.17 Score=60.64 Aligned_cols=10 Identities=10% Similarity=0.580 Sum_probs=6.1
Q ss_pred cCCCCeeeec
Q 001687 238 SADGRRYYFN 247 (1029)
Q Consensus 238 d~~Gr~YYyN 247 (1029)
||-...|||-
T Consensus 298 dP~n~mFyyr 307 (728)
T KOG4592|consen 298 DPPNNMFYYR 307 (728)
T ss_pred CCCccchHHH
Confidence 4445677775
No 41
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.092 Score=60.69 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=59.4
Q ss_pred CCCcEEEEcCCC---CeeeeccCcc-ccccCCCcccchhh--------cccCCCCCcEEEECCCCCeEEEeCCCCeeecc
Q 001687 230 QTDWKEHTSADG---RRYYFNKRTR-VSTWDKPFELMTTI--------ERADASTDWKEFTSPDGRKYYYNKVTKQSKWS 297 (1029)
Q Consensus 230 ~~~W~e~~d~~G---r~YYyN~~T~-~stWe~P~~~~~~~--------e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We 297 (1029)
+.+|....+.+| ..||+|+.+. .|+|..|.....+. .+...-.+|....+++|..||||+..+.++|-
T Consensus 62 prewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g~r~F~~~i~~ktt~l 141 (358)
T KOG0940|consen 62 PREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTGQRPFYKHILKKTTTL 141 (358)
T ss_pred CcceeeeeccccCCcceeeeeecccccccccCCccCCCCCcccccccccccccccceeeEecCCCceehhhhhhcCcccc
Confidence 457999999998 9999999999 59999998774332 11122338999999999999999999999999
Q ss_pred CChHH
Q 001687 298 LPDEL 302 (1029)
Q Consensus 298 ~P~~~ 302 (1029)
.|.+.
T Consensus 142 dd~e~ 146 (358)
T KOG0940|consen 142 DDREA 146 (358)
T ss_pred Cchhh
Confidence 88663
No 42
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=1.7 Score=54.27 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=3.7
Q ss_pred hHHHHHH
Q 001687 656 DRLEIFQ 662 (1029)
Q Consensus 656 DrlelFe 662 (1029)
+..+||.
T Consensus 620 sl~evY~ 626 (887)
T KOG1985|consen 620 SLNEVYA 626 (887)
T ss_pred cHHHHHh
Confidence 4455664
No 43
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=92.53 E-value=0.058 Score=59.62 Aligned_cols=52 Identities=29% Similarity=0.386 Sum_probs=45.4
Q ss_pred cccccCCCcccchhhcccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHH
Q 001687 251 RVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (1029)
Q Consensus 251 ~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (1029)
...+|..|..+++..+.......|.+-..++|.+||||..|++|+|..|...
T Consensus 130 ~a~q~~~~~g~v~~~e~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~ 181 (336)
T KOG0150|consen 130 PALQEYIPTGLVTKDEANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRIS 181 (336)
T ss_pred ccchhhccccccchhhhhhhhhhcccccCCCCCCcceecCCCccccCCCCcc
Confidence 6788999998887766556677899999999999999999999999999843
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=92.41 E-value=2.7 Score=53.41 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=10.6
Q ss_pred CChHHHHHHHHHHHH
Q 001687 736 STPKDLFEDVVEELQ 750 (1029)
Q Consensus 736 StpldLF~D~Veel~ 750 (1029)
+.++|+|.-+.+...
T Consensus 663 ~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS 677 (1018)
T ss_pred hHHHHHHHHHHHHHh
Confidence 456788877777765
No 45
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=92.35 E-value=3.5 Score=50.43 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHH
Q 001687 655 MDRLEIFQEYLNDL 668 (1029)
Q Consensus 655 ~DrlelFed~I~~L 668 (1029)
+-++.||++.+...
T Consensus 720 LIrmgIFeE~LARF 733 (1034)
T KOG0608|consen 720 LIRMGIFEEDLARF 733 (1034)
T ss_pred HHHhccCHHHHHHH
Confidence 45778888766543
No 46
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=2.5 Score=51.30 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=4.3
Q ss_pred ccccCCCCCCC
Q 001687 191 SVSQSTVSSTP 201 (1029)
Q Consensus 191 ~~~~~~~~~~p 201 (1029)
+++|..++++|
T Consensus 590 ~atq~~~pP~p 600 (861)
T KOG3161|consen 590 VATQSPTPPSP 600 (861)
T ss_pred ccCCCCCCCCc
Confidence 33444444433
No 47
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=91.88 E-value=10 Score=44.11 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.3
Q ss_pred ccCccc
Q 001687 247 NKRTRV 252 (1029)
Q Consensus 247 N~~T~~ 252 (1029)
+-+.|.
T Consensus 323 dvidKv 328 (358)
T PF07223_consen 323 DVIDKV 328 (358)
T ss_pred HHHHHH
Confidence 333333
No 48
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.87 E-value=3.7 Score=48.60 Aligned_cols=6 Identities=33% Similarity=0.213 Sum_probs=2.5
Q ss_pred CCCccC
Q 001687 148 ASYTFA 153 (1029)
Q Consensus 148 ~~y~~~ 153 (1029)
++++.+
T Consensus 447 P~~~~~ 452 (569)
T KOG3671|consen 447 PSAPIA 452 (569)
T ss_pred CCccCC
Confidence 344433
No 49
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=90.34 E-value=9.3 Score=42.88 Aligned_cols=115 Identities=19% Similarity=0.256 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhhcCccccCCChHHHHHHHhcChhhhhhhcCCCCCChHHHHHHHHHHHHHHhHHHHHHH---HHHHHh
Q 001687 690 NRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRI---KDAVKL 766 (1029)
Q Consensus 690 ~Rd~Fk~LL~e~~~~g~I~~~T~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Veel~~~~~e~K~~i---~d~lk~ 766 (1029)
+..++...|.++ .+..+..|-+-..+....+-... ..|+..|+..|+. =|...-..+ ...|..
T Consensus 33 n~~~L~~kl~ei----~~~~~~pWiE~L~vts~~~~~~~---------~~d~~dD~~RE~a-Fy~qAl~av~~a~~~L~~ 98 (271)
T PF05890_consen 33 NKEALKQKLKEI----KLPKKLPWIETLDVTSPEPTDEQ---------IKDVNDDLKRELA-FYKQALEAVKEARPRLKK 98 (271)
T ss_pred CHHHHHHHHHHh----cccCCCCCeeEEeeecCccchhh---------hccccccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 445566666663 23446788765544332221111 1234455555442 222222222 335566
Q ss_pred cccccccCCCHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001687 767 RKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFF 828 (1029)
Q Consensus 767 ~~i~v~~~wt~eef~~~l~ed~r~~~i~~~~lk~iFe~li~r~keKee~e~rk~~R~~~~F~ 828 (1029)
.+|.+.--.+ -|...|.. ++.|..|-..|+......++.+.+++.|....|-
T Consensus 99 ~gip~~RP~D--YfAEMvKS--------D~HM~KVr~kLl~~~~~ie~~E~~rk~Re~KKfg 150 (271)
T PF05890_consen 99 LGIPFKRPDD--YFAEMVKS--------DEHMEKVRQKLLKEQKRIEASEEARKQRELKKFG 150 (271)
T ss_pred cCCCccCCCc--chHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665543 35566654 4577777777777665555554444444444443
No 50
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=89.57 E-value=0.1 Score=66.97 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 001687 481 AKNAFKALLE 490 (1029)
Q Consensus 481 Ak~aFk~LL~ 490 (1029)
.+..|..||+
T Consensus 517 iE~~y~~ll~ 526 (808)
T PF09770_consen 517 IEKLYSLLLE 526 (808)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3455555554
No 51
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=89.22 E-value=2.6 Score=50.39 Aligned_cols=7 Identities=43% Similarity=0.833 Sum_probs=3.0
Q ss_pred cHHHHHH
Q 001687 842 TWENCRQ 848 (1029)
Q Consensus 842 tWee~k~ 848 (1029)
+||+...
T Consensus 715 tWe~~V~ 721 (742)
T KOG4274|consen 715 TWEEQVN 721 (742)
T ss_pred HHHHHHH
Confidence 3444433
No 52
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=89.12 E-value=0.12 Score=66.49 Aligned_cols=9 Identities=11% Similarity=0.796 Sum_probs=2.5
Q ss_pred ChHHHHHHH
Q 001687 712 NWRDYCIKV 720 (1029)
Q Consensus 712 ~W~d~~~~i 720 (1029)
.|.++|..|
T Consensus 711 ~W~~~~~~l 719 (808)
T PF09770_consen 711 QWTEFYDQL 719 (808)
T ss_dssp HHHHH----
T ss_pred Hhhhhhhhc
Confidence 455554433
No 53
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=88.48 E-value=0.85 Score=55.65 Aligned_cols=72 Identities=17% Similarity=0.472 Sum_probs=59.9
Q ss_pred CCCcEEEEcCCCCeeeeccCccccccCCCcccch---hh--cccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001687 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT---TI--ERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (1029)
Q Consensus 230 ~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~---~~--e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (1029)
..-|+...+..|-+||.++.|+.|+|=+|+-.+. +. +...++-+|...-|+-=-+|||.+.+..|+++-|-.
T Consensus 224 p~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~enpvl 300 (984)
T KOG3209|consen 224 PHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVL 300 (984)
T ss_pred CccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhhccchh
Confidence 5679999999999999999999999999983322 22 223578899999887667899999999999999965
No 54
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=87.44 E-value=2.2 Score=49.19 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.3
Q ss_pred CCCCCC
Q 001687 28 PRGFGP 33 (1029)
Q Consensus 28 pq~f~~ 33 (1029)
|..|++
T Consensus 380 ~~~Y~~ 385 (462)
T KOG2199|consen 380 PALYPQ 385 (462)
T ss_pred cccCCC
Confidence 333433
No 55
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.04 E-value=0.46 Score=57.04 Aligned_cols=15 Identities=33% Similarity=0.497 Sum_probs=6.3
Q ss_pred cCCCCCCCcchhhhh
Q 001687 986 RLASTPESENESRHK 1000 (1029)
Q Consensus 986 ~~~~~~~s~~~~~~~ 1000 (1029)
+|.|+..++...|||
T Consensus 800 r~~d~~r~~~~~~~k 814 (878)
T KOG1847|consen 800 RHEDSSRVEHGHRHK 814 (878)
T ss_pred cccchhhhcccCccc
Confidence 333344444444444
No 56
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=86.92 E-value=51 Score=42.63 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHhhcCccccccCC
Q 001687 480 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRT 518 (1029)
Q Consensus 480 EAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~ 518 (1029)
-.-+.|.+-|..- .|+-+ -+|=.|.-|.+
T Consensus 549 SQSArF~kHldRG-~NSCa---------RTDL~F~Pl~g 577 (982)
T PF03154_consen 549 SQSARFNKHLDRG-YNSCA---------RTDLYFVPLPG 577 (982)
T ss_pred hHHHHHHHHhhcc-ccccc---------ccceeeeecCc
Confidence 3456788887532 33322 13556666664
No 57
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=4.5 Score=47.66 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=4.0
Q ss_pred CCCccCCCC
Q 001687 148 ASYTFAPSS 156 (1029)
Q Consensus 148 ~~y~~~~~s 156 (1029)
+.|+.|.+|
T Consensus 473 ~~~q~q~~~ 481 (483)
T KOG2236|consen 473 PMNQMQNPS 481 (483)
T ss_pred hhhcccCCC
Confidence 445444433
No 58
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=85.88 E-value=14 Score=45.57 Aligned_cols=9 Identities=22% Similarity=-0.012 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 001687 130 QALSSYPPG 138 (1029)
Q Consensus 130 ~~p~~~~p~ 138 (1029)
++|.+|+|+
T Consensus 488 ~qpqs~~p~ 496 (856)
T KOG3582|consen 488 FQPQSSMPR 496 (856)
T ss_pred cCccccccc
Confidence 444444443
No 59
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=85.49 E-value=12 Score=46.08 Aligned_cols=7 Identities=43% Similarity=1.194 Sum_probs=4.4
Q ss_pred CCCeeee
Q 001687 240 DGRRYYF 246 (1029)
Q Consensus 240 ~Gr~YYy 246 (1029)
|||.||.
T Consensus 327 d~rkfF~ 333 (944)
T KOG4307|consen 327 DGRKFFP 333 (944)
T ss_pred hhhhhcC
Confidence 5777754
No 60
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=85.04 E-value=1e+02 Score=40.01 Aligned_cols=9 Identities=0% Similarity=-0.451 Sum_probs=3.8
Q ss_pred CCcHHHHHH
Q 001687 633 NTQWRKVQD 641 (1029)
Q Consensus 633 ~T~W~ev~~ 641 (1029)
...|-++..
T Consensus 759 ~~~~~e~~~ 767 (982)
T PF03154_consen 759 VPNPLEHFR 767 (982)
T ss_pred CCccchhhh
Confidence 344544433
No 61
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=84.16 E-value=36 Score=42.26 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 001687 27 PPRGFGPPIP 36 (1029)
Q Consensus 27 ~pq~f~~p~~ 36 (1029)
....|..+.+
T Consensus 166 g~~~f~ayh~ 175 (1034)
T KOG0608|consen 166 GGHSFRAYHP 175 (1034)
T ss_pred CCCcccccCC
Confidence 4455554433
No 62
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=83.78 E-value=1.6 Score=53.71 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=79.2
Q ss_pred CCCCCCcccccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCcEEEEcC-CCCeeeeccCccccccCC---C-
Q 001687 184 AGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSA-DGRRYYFNKRTRVSTWDK---P- 258 (1029)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~W~e~~d~-~Gr~YYyN~~T~~stWe~---P- 258 (1029)
.-++.....+....+..++|++........+..- .. +-.....|..+++. .|+.|||+..|+.++|+. +
T Consensus 230 ~~~~~r~l~~e~d~~~~~~~~~~~~~~~~~~~g~--~~----~pl~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~ 303 (650)
T KOG1450|consen 230 TRKQSRALPAEIDDPPEPEYAGYTEQTEILSPGR--TA----RPLKSTVWETSTDALTGNPLYYYSDTGSTTWSGHHSPP 303 (650)
T ss_pred hhcccccccccccCccchhhhhhhhhhhhccccc--cc----ccCCCcccccchhhcccccceeecccCcccccCCCCcc
Confidence 3444455556777888889999888766333221 11 12235789999998 499999999999999995 2
Q ss_pred cccchhh--------c--ccCCCCCcEEEEC-CCCCeEEEeCCCCeeeccCChHH
Q 001687 259 FELMTTI--------E--RADASTDWKEFTS-PDGRKYYYNKVTKQSKWSLPDEL 302 (1029)
Q Consensus 259 ~~~~~~~--------e--~~~~~~~W~e~~~-~~Gr~YyyN~~T~es~We~P~~~ 302 (1029)
....... + .....+.|..+.. ..+...|||..+++|.|...-..
T Consensus 304 ~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~net~~~d~~~~ 358 (650)
T KOG1450|consen 304 EKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNETSFEDWSSN 358 (650)
T ss_pred ccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCCccccchhhc
Confidence 1111111 1 1246788998888 58999999999999999987554
No 63
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=83.59 E-value=1.1 Score=54.68 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=32.1
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHH
Q 001687 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (1029)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 305 (1029)
.++..|.-..++.|-+||.++.|+.++|-+|...+.+
T Consensus 222 plp~nwemayte~gevyfiDhntkttswLdprl~kka 258 (984)
T KOG3209|consen 222 PLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKA 258 (984)
T ss_pred CCCccceEeEeecCeeEeeecccccceecChhhhccc
Confidence 3678999999999999999999999999999854433
No 64
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=83.42 E-value=1.4 Score=53.56 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=15.1
Q ss_pred ccCCCCCCCCCCCCCCCcCCC
Q 001687 969 DRSKNPHRHNSDRKKPRRLAS 989 (1029)
Q Consensus 969 ~~~k~~~~~~~~~k~~r~~~~ 989 (1029)
.+||.+..|.+++|+.|.|+.
T Consensus 154 ~~~k~~~~~~kdh~~~r~~~~ 174 (681)
T KOG3702|consen 154 EVHKIHNYEKKDHKHRRNKRS 174 (681)
T ss_pred hhhccCCcccCcchhcccccc
Confidence 556777677888888877654
No 65
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=82.66 E-value=4.5 Score=50.26 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001687 866 RGVFDEFVTQLKEQAKDYERKRKEEKAK 893 (1029)
Q Consensus 866 ~~~F~e~i~~Lkek~~e~er~r~~~~~~ 893 (1029)
-.+|..|+.-++...-+.|-+.+-|+|.
T Consensus 716 f~~f~~F~~~~k~~~~ene~k~~le~A~ 743 (830)
T KOG1923|consen 716 FQLFVRFVRAYKMARQENEQKKKLEAAL 743 (830)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 3567777777766655555444444443
No 66
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=82.52 E-value=1.5 Score=50.17 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 001687 871 EFVTQLKEQAKDY 883 (1029)
Q Consensus 871 e~i~~Lkek~~e~ 883 (1029)
+|...|-++.+++
T Consensus 215 ~f~sS~tek~KeK 227 (453)
T KOG3794|consen 215 EFSSSLTEKQKEK 227 (453)
T ss_pred HhhhhhhHHHHHH
Confidence 3445554444433
No 67
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.44 E-value=14 Score=46.04 Aligned_cols=18 Identities=17% Similarity=-0.045 Sum_probs=8.0
Q ss_pred HHhhcCccccCCChHHHH
Q 001687 700 ADVALGTLTAKTNWRDYC 717 (1029)
Q Consensus 700 e~~~~g~I~~~T~W~d~~ 717 (1029)
++.+.|.--..+.=-+++
T Consensus 259 ema~sGq~lP~tlP~E~V 276 (1118)
T KOG1029|consen 259 EMAKSGQPLPKTLPPELV 276 (1118)
T ss_pred HHHhcCCCCCCCCChhhc
Confidence 334445444444444443
No 68
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=81.40 E-value=0.77 Score=51.12 Aligned_cols=35 Identities=37% Similarity=0.680 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCCCeeeeccCccccccCCCcccchh
Q 001687 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTT 264 (1029)
Q Consensus 230 ~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~~ 264 (1029)
...|.+-+.++|-.||||..|++|.|..|....+.
T Consensus 150 ~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ts 184 (336)
T KOG0150|consen 150 TKEWVEGKNESGPTYYSNKRTNESVWKPPRISFTS 184 (336)
T ss_pred hhhcccccCCCCCCcceecCCCccccCCCCccccc
Confidence 45799999999999999999999999999977654
No 69
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=81.38 E-value=6.2 Score=49.13 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 001687 655 MDRLEIFQEYLNDLEKE 671 (1029)
Q Consensus 655 ~DrlelFed~I~~Leke 671 (1029)
...+..|.+-|+-+++.
T Consensus 620 lp~l~~F~~el~~~eKa 636 (830)
T KOG1923|consen 620 LPALQLFFSELDFVEKA 636 (830)
T ss_pred hHHHHhhHHHhhccchh
Confidence 34556666666555543
No 70
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=79.41 E-value=0.58 Score=56.89 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=9.8
Q ss_pred cccccccCCCCccccccc
Q 001687 937 AENDSKRSGKDNDKKHRK 954 (1029)
Q Consensus 937 ~~~~~k~~~k~~~~k~rk 954 (1029)
.|+++|+++|+.+.|+++
T Consensus 805 kh~kkK~k~kk~kekr~k 822 (883)
T KOG2138|consen 805 KHKKKKDKHKKKKEKRRK 822 (883)
T ss_pred HhhhhhhhhHHHHHHHHh
Confidence 367777666544443333
No 71
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=77.64 E-value=1.1 Score=46.43 Aligned_cols=21 Identities=38% Similarity=0.745 Sum_probs=12.6
Q ss_pred CCcchhhhhccccccCCCCCCCCC
Q 001687 992 ESENESRHKRHRRDNRNGSRKNGD 1015 (1029)
Q Consensus 992 ~s~~~~~~~r~~~~~~~~~~~~~~ 1015 (1029)
||++ .|.|++|.|..+||.-+
T Consensus 213 ds~s---RkKHk~d~r~~~RR~Hd 233 (238)
T KOG4520|consen 213 DSHS---RKKHKRDDRYERRREHD 233 (238)
T ss_pred cccc---hhhhccccchhhhhccC
Confidence 5554 33477777767777443
No 72
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=76.12 E-value=14 Score=43.00 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHH
Q 001687 477 NKLEAKNAFKALL 489 (1029)
Q Consensus 477 tkeEAk~aFk~LL 489 (1029)
|+.+|-.+|++=+
T Consensus 471 tkDDaY~~FMkEM 483 (487)
T KOG4672|consen 471 TKDDAYNAFMKEM 483 (487)
T ss_pred cchHHHHHHHHHH
Confidence 4556666676543
No 73
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=75.89 E-value=2.2 Score=45.58 Aligned_cols=34 Identities=26% Similarity=0.602 Sum_probs=30.8
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001687 268 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (1029)
Q Consensus 268 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 301 (1029)
+.++.+|..-+|-.||+||.+++|..|-|..|-+
T Consensus 92 lPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle 125 (271)
T KOG1891|consen 92 LPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE 125 (271)
T ss_pred CCCCCCcceeeEecCceeEeecCCCcccccChhh
Confidence 4678999888888999999999999999999965
No 74
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=75.41 E-value=35 Score=39.73 Aligned_cols=19 Identities=16% Similarity=0.058 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 001687 18 QPPMVGSMDPPRGFGPPIP 36 (1029)
Q Consensus 18 ~~~~~~~~~~pq~f~~p~~ 36 (1029)
+++-++..+.+..|.-|++
T Consensus 324 ~~~~~~~~g~~s~~i~p~~ 342 (531)
T KOG1960|consen 324 TRTRVQIKGQGSAFIEPST 342 (531)
T ss_pred CCcceeccCccceeecCCC
Confidence 3344555666777765544
No 75
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=74.87 E-value=2.6 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=11.1
Q ss_pred ccccccCCCCcccccccccCCCCC
Q 001687 938 ENDSKRSGKDNDKKHRKRHQSAHD 961 (1029)
Q Consensus 938 ~~~~k~~~k~~~~k~rkr~~s~~~ 961 (1029)
|+|+++++|.+++||++.|.+.|.
T Consensus 829 hkkhkk~~~~k~rk~kkSss~~Ss 852 (883)
T KOG2138|consen 829 HKKHKKKGKQKNRKPKKSSSSESS 852 (883)
T ss_pred chhhcccchhhccCcccccccccc
Confidence 344444444445555554443333
No 76
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=74.38 E-value=24 Score=44.26 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=9.6
Q ss_pred CChHHHHHHHHHHHHHHhHHHHHHHHH
Q 001687 736 STPKDLFEDVVEELQKQFQEDKTRIKD 762 (1029)
Q Consensus 736 StpldLF~D~Veel~~~~~e~K~~i~d 762 (1029)
...|++++..|..|+..|...+.++..
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~~~k~Il~~ 348 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYESRKPILEL 348 (619)
T ss_dssp -------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999998777776665543
No 77
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=71.39 E-value=19 Score=44.80 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001687 11 SGAQVPHQPPMVGSMDPPRGFGPPIP 36 (1029)
Q Consensus 11 ~g~p~P~~~~~~~~~~~pq~f~~p~~ 36 (1029)
+|+|+++.+=+++++++|++|.++-.
T Consensus 30 Ppapa~pnp~qqpppQ~pP~y~~~~~ 55 (907)
T KOG4167|consen 30 PPAPAIPNPYQQPPPQPPPGYTGGLS 55 (907)
T ss_pred CCCCCCCCccCCCCCCCCCCcCcccc
Confidence 34443333333445556666666643
No 78
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=70.77 E-value=8.4 Score=47.52 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=8.2
Q ss_pred HHHHHHhCCCCCCCcHHHH
Q 001687 485 FKALLESANVGSDWTWDQA 503 (1029)
Q Consensus 485 Fk~LL~e~~V~s~~tWe~a 503 (1029)
.+..+...-|.-...|+.+
T Consensus 323 vidrM~~fV~~egp~fea~ 341 (877)
T KOG0151|consen 323 VIDRMAEFVVREGPMFEAM 341 (877)
T ss_pred HHHHHHHHHhccCccHHHH
Confidence 3344444444444444443
No 79
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=70.35 E-value=48 Score=33.10 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccC
Q 001687 523 KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALE 585 (1029)
Q Consensus 523 KqlFeeY~~~~~k~E~eekr~~~kkare~F~~lLee~~~I~~~trW~~a~~~~~~Dprfkav~ 585 (1029)
.+||+.|-=++.++-.+++..+++ --++|+..|++.. . .++|+|.+..
T Consensus 34 EeL~~r~sPELrkr~~~~r~~Rq~-e~~~~~~~lKe~s--k------------SdkPIW~~~~ 81 (128)
T PF07960_consen 34 EELFKRYSPELRKRYLENRELRQQ-EFDEFMKILKETS--K------------SDKPIWKTGK 81 (128)
T ss_pred HHHHHhcCHHHHHHHHHhHHHHHH-HHHHHHHHHHHHh--c------------cCCCceeeCC
Confidence 689999988888766555544433 3477888888752 1 4689999754
No 80
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=69.03 E-value=8.4 Score=45.05 Aligned_cols=33 Identities=6% Similarity=-0.142 Sum_probs=30.0
Q ss_pred CCCCcEEEEcCCCCeeeeccCccccccCCCccc
Q 001687 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (1029)
Q Consensus 229 ~~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~ 261 (1029)
..+.|..|.-.+|=.||||-+|.++.|+.+.+.
T Consensus 451 Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI 483 (510)
T KOG0144|consen 451 VLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAI 483 (510)
T ss_pred eeEEEEEEecccCHhhhcCcccccchhhhHHHH
Confidence 457899999999999999999999999999765
No 81
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.32 E-value=4.2e+02 Score=35.65 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhh-cc----CChHHHHHHHHHHHHHHHH
Q 001687 529 YLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK-AL----ERERDRKDMFDDHLDELKQ 603 (1029)
Q Consensus 529 Y~~~~~k~E~eekr~~~kkare~F~~lLee~~~I~~~trW~~a~~~~~~Dprfk-av----~~e~eRe~lFeeyi~~L~k 603 (1029)
|+.++++-+-..++=++......|..-|.....+. .+-|.+++.+|++..-|. ++ .+..-++.+++-|-+.|..
T Consensus 873 ~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~-~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~ 951 (1265)
T KOG1920|consen 873 FLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG-ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLRE 951 (1265)
T ss_pred HHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC-ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHH
Confidence 44455444444444444555666666666544444 678999999999999887 33 2445778899999888876
Q ss_pred HH
Q 001687 604 KE 605 (1029)
Q Consensus 604 kE 605 (1029)
..
T Consensus 952 ~~ 953 (1265)
T KOG1920|consen 952 EL 953 (1265)
T ss_pred hc
Confidence 53
No 82
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=67.45 E-value=52 Score=40.91 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCCCccC
Q 001687 135 YPPGLGGLGRPVAASYTFA 153 (1029)
Q Consensus 135 ~~p~~g~~gp~~~~~y~~~ 153 (1029)
.++++.+.|.|..++|.++
T Consensus 260 ~e~~~~gSgnp~~q~~~~~ 278 (944)
T KOG4307|consen 260 RENHIQGSGNPRVQGGDSW 278 (944)
T ss_pred CccccccCCChhhhCCchh
Confidence 3444455566656667554
No 83
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.27 E-value=37 Score=39.09 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001687 94 GPPAPSHVPPPPQVMSLPNAQPSNHIP 120 (1029)
Q Consensus 94 ~~~~p~~~~pp~q~~~~p~~q~~~~~~ 120 (1029)
+++.|+..|||.+ .|++.++++|+.
T Consensus 431 prPppqggppP~g--~~~~p~~~~hl~ 455 (488)
T KOG3895|consen 431 PRPPPQGGPPPRG--HMSDPVGSRHLD 455 (488)
T ss_pred CCCCCCCCCCCcc--ccCCccccccCC
Confidence 3334444444433 233334445544
No 84
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.17 E-value=3.9e+02 Score=33.88 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=56.1
Q ss_pred CCCChHHHHHHH---HHHHHHHhHHHHHHHHHHHHhcccccccCCCHHHHHHHHhhc---CCCCCCChhhHHHHH-HHHH
Q 001687 734 SGSTPKDLFEDV---VEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED---ATSPPISDVNLKLIF-DDLL 806 (1029)
Q Consensus 734 ~gStpldLF~D~---Veel~~~~~e~K~~i~d~lk~~~i~v~~~wt~eef~~~l~ed---~r~~~i~~~~lk~iF-e~li 806 (1029)
...+.++++..+ ++.|.+++.+.++.|.+++.. .+.+...|.+- ..+-.+|..++-+.+ ++|.
T Consensus 97 ~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q----------ie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr 166 (660)
T KOG4302|consen 97 IEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ----------IEKLCEELGGPEDLPSFLIADESDLSLEKLEELR 166 (660)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcCCccCCcccccCcccccHHHHHHHH
Confidence 444777777766 455667777777777776542 12333333332 233444555554332 5665
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhc-c--CCCCCCcHHHHHHHhcC
Q 001687 807 IKVKEKEEKEAKKRKRLEDEFFDLLCSV-K--EISATSTWENCRQLLEG 852 (1029)
Q Consensus 807 ~r~keKee~e~rk~~R~~~~F~~lL~~~-~--~I~~~stWee~k~~i~~ 852 (1029)
.+|.+=++ +...|.+....|+..|+.+ . .+...++=.+|-+.+.+
T Consensus 167 ~~L~~L~~-ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~ 214 (660)
T KOG4302|consen 167 EHLNELQK-EKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVD 214 (660)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhh
Confidence 55543222 2222223345566655553 2 45666556677776654
No 85
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=64.07 E-value=2.8 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=18.4
Q ss_pred CCCCCeEEEeCCCCeeeccCChHHH
Q 001687 279 SPDGRKYYYNKVTKQSKWSLPDELK 303 (1029)
Q Consensus 279 ~~~Gr~YyyN~~T~es~We~P~~~~ 303 (1029)
+...|.|+||...|+|+|++|..++
T Consensus 380 ~~~eKLYHyN~~GGtSTW~LP~~w~ 404 (425)
T PF12905_consen 380 DDEEKLYHYNPDGGTSTWTLPDSWA 404 (425)
T ss_dssp GGG-EEEEEESS-CEEEEE--HHHC
T ss_pred CCcceeEEEcCCCCeeeeeCCcccc
Confidence 3467999999999999999999885
No 86
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=62.48 E-value=2.5e+02 Score=30.99 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=13.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHH
Q 001687 651 RLDKMDRLEIFQEYLNDLEKEEE 673 (1029)
Q Consensus 651 ~l~~~DrlelFed~I~~Lekeee 673 (1029)
.....+++..+.+-|..|++...
T Consensus 29 r~~ee~r~~~i~e~i~~Le~~l~ 51 (247)
T PF06705_consen 29 REQEEQRFQDIKEQIQKLEKALE 51 (247)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666777777765443
No 87
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=61.07 E-value=2.9e+02 Score=33.72 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=6.7
Q ss_pred CCCeeeeccCcc
Q 001687 240 DGRRYYFNKRTR 251 (1029)
Q Consensus 240 ~Gr~YYyN~~T~ 251 (1029)
.|.|-|||+.-.
T Consensus 652 ~~~v~y~~P~qq 663 (694)
T KOG4264|consen 652 PTDVVYFDPQQQ 663 (694)
T ss_pred cCCceeeChHHh
Confidence 355667774433
No 88
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.02 E-value=1.4e+02 Score=35.85 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=32.7
Q ss_pred ChHHHHHHHhcChhhhhhhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 001687 712 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD 762 (1029)
Q Consensus 712 ~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Veel~~~~~e~K~~i~d 762 (1029)
.|+.|...|.-.+.=+-.-.|.-..|....|++....+.....+.+++-+|
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqkd 52 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQKD 52 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666433322222225677888899999999988777777665443
No 89
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=58.65 E-value=2.6e+02 Score=35.53 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q 001687 800 LIFDDLLIKVKEK 812 (1029)
Q Consensus 800 ~iFe~li~r~keK 812 (1029)
..|++|+.++.-|
T Consensus 903 ~~~e~~~~~l~sk 915 (1259)
T KOG0163|consen 903 KNYEKLVKRLDSK 915 (1259)
T ss_pred HHHHHHHHHhhhh
Confidence 4567777776443
No 90
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=58.01 E-value=85 Score=39.19 Aligned_cols=13 Identities=23% Similarity=0.038 Sum_probs=5.9
Q ss_pred cCCCCCCCCCCCC
Q 001687 175 SQMHVPSISAGGQ 187 (1029)
Q Consensus 175 ~q~~~p~~~~~~~ 187 (1029)
.+|+|+.++-.|+
T Consensus 1097 ~~~PPH~~~~PH~ 1109 (1136)
T KOG4786|consen 1097 PQMPPHQQQQPHQ 1109 (1136)
T ss_pred CCCCcccccCccc
Confidence 4555554443333
No 91
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=57.73 E-value=50 Score=42.12 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=11.6
Q ss_pred ccCCCCCCCCCCCccc
Q 001687 193 SQSTVSSTPVQPTDEQ 208 (1029)
Q Consensus 193 ~~~~~~~~p~~~~~~~ 208 (1029)
--++++++|++.|+-|
T Consensus 892 ~~tsr~ssplQlnllq 907 (1114)
T KOG3753|consen 892 LFTSRSSSPLQLNLLQ 907 (1114)
T ss_pred cccCCCCCHHHHHHHH
Confidence 3456778888888766
No 92
>KOG4043 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.99 E-value=3.2 Score=42.17 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=18.9
Q ss_pred CCCCCCcCcccccccccCCCCccccccc
Q 001687 927 DGADSDHDDSAENDSKRSGKDNDKKHRK 954 (1029)
Q Consensus 927 ~~~~~~~~~~~~~~~k~~~k~~~~k~rk 954 (1029)
|+.+.|.+...|+|.||+++|++||++|
T Consensus 164 d~a~~ET~e~~hKK~KkhedDKeRKK~K 191 (214)
T KOG4043|consen 164 DFADDETEEGFHKKHKKHEDDKERKKEK 191 (214)
T ss_pred ccccchhhhcchhhhhhhhhhHHHHHHH
Confidence 4433344445788888888887777776
No 93
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.87 E-value=1.1e+02 Score=37.95 Aligned_cols=11 Identities=9% Similarity=0.274 Sum_probs=6.1
Q ss_pred CeeeeccCccc
Q 001687 242 RRYYFNKRTRV 252 (1029)
Q Consensus 242 r~YYyN~~T~~ 252 (1029)
-+||-|..|.+
T Consensus 673 h~~~t~~~S~~ 683 (861)
T KOG3161|consen 673 HLFETQRRSKE 683 (861)
T ss_pred eeccccccchh
Confidence 35666665553
No 94
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=56.40 E-value=37 Score=39.44 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001687 870 DEFVTQLKEQAKDYE 884 (1029)
Q Consensus 870 ~e~i~~Lkek~~e~e 884 (1029)
.-.+..-+++..-+.
T Consensus 218 sS~tek~KeKl~kKl 232 (453)
T KOG3794|consen 218 SSLTEKQKEKLLKKL 232 (453)
T ss_pred hhhhHHHHHHHHHHH
Confidence 333344444444443
No 95
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=54.79 E-value=3e+02 Score=31.38 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcc---CCCCCCcHHHHHHHhcCcccccccCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001687 824 EDEFFDLLCSVK---EISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQ-AKDYERKRKEEKAKREKERE 899 (1029)
Q Consensus 824 ~~~F~~lL~~~~---~I~~~stWee~k~~i~~~~ey~~L~~e~~r~~~F~e~i~~Lkek-~~e~er~r~~~~~~~~~~~e 899 (1029)
+..++.||+.++ .|+.. +|-++.-...+ -.|+++ ....+||..++.. .++++ ..++-++++.|-++
T Consensus 99 IRaLRRlLKklRd~gKIDkh-~YR~LYrKAKG-n~FKNK-------~~L~e~I~k~KaE~~R~K~-L~dQ~eArR~k~~~ 168 (357)
T PTZ00436 99 LRILRRLLRKYREEKKIDRH-IYRELYVKAKG-NVFRNK-------RNLMEHIHKVKNEKKKERQ-LAEQLAAKRLKDEQ 168 (357)
T ss_pred HHHHHHHHHHHHhcCCCCHH-HHHHHHHHhcC-CccCcH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 344555666553 46543 45555554443 245543 3446677765532 22222 22334455444443
No 96
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=53.96 E-value=6.1e+02 Score=32.87 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=24.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001687 652 LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLME 699 (1029)
Q Consensus 652 l~~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~ 699 (1029)
+.++|...|-..-|.+|+|+..|...+-+ ..-|+-|.|.--+.
T Consensus 659 ~e~lD~d~i~~~q~eel~Ke~kElq~rL~-----~q~KkiDh~ERA~R 701 (988)
T KOG2072|consen 659 LEKLDADQIKARQIEELEKERKELQSRLQ-----YQEKKIDHLERAKR 701 (988)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHH
Confidence 44567777777778888776555332221 22245555554443
No 97
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.62 E-value=5.8e+02 Score=32.47 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhhcC----ccccccC--ChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001687 477 NKLEAKNAFKALLESANVGSDWTWDQALRAIIND----RRYGALR--TLG-ERKTAFNEYLGQKKKQDAEERRLKLKKAR 549 (1029)
Q Consensus 477 tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~D----pRy~al~--~~~-ERKqlFeeY~~~~~k~E~eekr~~~kkar 549 (1029)
-|.|.+..|++|+..- +-+..++.. +.|-.++ ++. ++-.-|..-|.++.+ |+..+..+.-..+
T Consensus 118 qk~eR~~ef~el~~qi---------e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~-ek~~Rlekv~~~~ 187 (660)
T KOG4302|consen 118 QKDERRAEFKELYHQI---------EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQK-EKSDRLEKVLELK 187 (660)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4678999999998642 011112222 3444443 233 566677777777653 3333333333344
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHh-ccchhhhccCChHHHHHHHHHHHHHHHHHHHH
Q 001687 550 DDYKKMLEESVELTSSTRWSKAVTMF-ENDERFKALERERDRKDMFDDHLDELKQKERA 607 (1029)
Q Consensus 550 e~F~~lLee~~~I~~~trW~~a~~~~-~~Dprfkav~~e~eRe~lFeeyi~~L~kkEke 607 (1029)
.+...+-... .+...+.-.++-..+ ..+-++....+ .++..-+..-+..|+...++
T Consensus 188 ~~I~~l~~~L-g~~~~~~vt~~~~sL~~~~~~~~~~is-~etl~~L~~~v~~l~~~k~q 244 (660)
T KOG4302|consen 188 EEIKSLCSVL-GLDFSMTVTDVEPSLVDHDGEQSRSIS-DETLDRLDKMVKKLKEEKKQ 244 (660)
T ss_pred HHHHHHHHHh-CCCcccchhhhhhhhhhccCcccccCC-HHHHHHHHHHHHHHHHHHHH
Confidence 4444443332 455554445555544 33333442223 47888888888877765433
No 98
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=53.25 E-value=1.4e+02 Score=35.62 Aligned_cols=8 Identities=13% Similarity=-0.271 Sum_probs=3.5
Q ss_pred ccccCCCc
Q 001687 252 VSTWDKPF 259 (1029)
Q Consensus 252 ~stWe~P~ 259 (1029)
+.+|+.+.
T Consensus 296 ~~t~~~~~ 303 (409)
T KOG4590|consen 296 SRTRPVYC 303 (409)
T ss_pred cccccccc
Confidence 34444443
No 99
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=51.75 E-value=2.1e+02 Score=36.27 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=4.6
Q ss_pred CCCcEEEE
Q 001687 230 QTDWKEHT 237 (1029)
Q Consensus 230 ~~~W~e~~ 237 (1029)
+++|-..+
T Consensus 1083 pSGWw~gk 1090 (1106)
T KOG0162|consen 1083 PSGWWLGK 1090 (1106)
T ss_pred CCcchhhc
Confidence 45666555
No 100
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=51.30 E-value=9.6 Score=44.04 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=11.9
Q ss_pred ccccCCCCcccccccccCCCCC
Q 001687 940 DSKRSGKDNDKKHRKRHQSAHD 961 (1029)
Q Consensus 940 ~~k~~~k~~~~k~rkr~~s~~~ 961 (1029)
+.+|+++++..+.|+||.+...
T Consensus 208 ~~~Krhkkkese~rrr~~~S~s 229 (425)
T KOG1869|consen 208 KHRKRHKKKESENRRRHYDSYS 229 (425)
T ss_pred HHHHHhhhhhhhhhhhhccccc
Confidence 4444555566666666654433
No 101
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=50.51 E-value=9.8 Score=42.95 Aligned_cols=13 Identities=31% Similarity=0.693 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHH
Q 001687 655 MDRLEIFQEYLND 667 (1029)
Q Consensus 655 ~DrlelFed~I~~ 667 (1029)
.|.-++|+.||++
T Consensus 172 ~dLw~WyEpyldD 184 (453)
T KOG2888|consen 172 ADLWDWYEPYLDD 184 (453)
T ss_pred hHHHHHhhhhccc
Confidence 4555566666643
No 102
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=47.61 E-value=5.1e+02 Score=30.07 Aligned_cols=214 Identities=14% Similarity=0.256 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHhhcCccccCCChHHHHHHH---h
Q 001687 656 DRLEIFQEYLNDLEKEEEEQRKIQKE-----------ELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKV---K 721 (1029)
Q Consensus 656 DrlelFed~I~~LekeeeE~kk~~k~-----------~~rR~eRK~Rd~Fk~LL~e~~~~g~I~~~T~W~d~~~~i---k 721 (1029)
....++.+....|..++.+..+.... ..-...|..-..|+.+|+.-.. +.-....+|.+..+.| .
T Consensus 87 ~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~-sD~~v~~k~~~~~~~l~lLs 165 (339)
T cd09235 87 RNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQ-ADKIVREKYESHREGIELLS 165 (339)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHc
Confidence 45567777777776665544332211 0111233444667777766432 2333344555544422 2
Q ss_pred cChhhh-hhh-cCCC-----CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCHHHHHHHHhhcCCC--CC
Q 001687 722 DSPPYM-AVA-SNTS-----GSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATS--PP 792 (1029)
Q Consensus 722 dd~rf~-~l~-~g~~-----gStpldLF~D~Veel~~~~~e~K~~i~d~lk~~~i~v~~~wt~eef~~~l~ed~r~--~~ 792 (1029)
...+=+ +.+ .+.. ++....-...+++++. ....+|..+...|+.....|+ ..|...+..+..+ ..
T Consensus 166 ~~~~~l~~~lPss~~~~~~~~~~~v~~Lr~~l~~l~-~lk~eR~~~~~~Lk~~~dDI~-----~~ll~~~~~~~~~~~e~ 239 (339)
T cd09235 166 KPEEELANAIPSASPAKTLQGSEAVQELRQLMEQVE-TIKAEREVIESELKSATFDMK-----SKFLSALAQDGAINEEA 239 (339)
T ss_pred CCHHHHHHhCCCCCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccH-----HHHHHHHHhcCCccHHH
Confidence 211111 111 0000 1112233344455543 344455555555555422221 2333333233322 34
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccCCCCCCcHHHHHHHhcC-cccccccCCh-hhHHHHHH
Q 001687 793 ISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEG-SQEFSSIGDE-SICRGVFD 870 (1029)
Q Consensus 793 i~~~~lk~iFe~li~r~keKee~e~rk~~R~~~~F~~lL~~~~~I~~~stWee~k~~i~~-~~ey~~L~~e-~~r~~~F~ 870 (1029)
|....|+..|+.++.++.+-..++..-...+...+..++.....-.....|+.+...|.. ...|..|..- ..-...|+
T Consensus 240 l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~ 319 (339)
T cd09235 240 ISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKFYN 319 (339)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455566667887777665433333333333333333333222221223467777766653 3345554321 23334555
Q ss_pred HHHHHH
Q 001687 871 EFVTQL 876 (1029)
Q Consensus 871 e~i~~L 876 (1029)
++...+
T Consensus 320 dL~~~~ 325 (339)
T cd09235 320 DLTEIL 325 (339)
T ss_pred HHHHHH
Confidence 555433
No 103
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=44.18 E-value=36 Score=40.14 Aligned_cols=36 Identities=6% Similarity=-0.056 Sum_probs=30.0
Q ss_pred CCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHH
Q 001687 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (1029)
Q Consensus 270 ~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 305 (1029)
--+-|..+.-.+|-.|||+=.+.++.|+.+..+...
T Consensus 451 Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~am 486 (510)
T KOG0144|consen 451 VLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAM 486 (510)
T ss_pred eeEEEEEEecccCHhhhcCcccccchhhhHHHHHHh
Confidence 345677666689999999999999999999887644
No 104
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=41.65 E-value=2.7e+02 Score=37.01 Aligned_cols=22 Identities=14% Similarity=-0.063 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCCccCCCCC
Q 001687 53 PMASQHFQPGGQGGLIMNAGFP 74 (1029)
Q Consensus 53 p~~~qq~~p~~~~~p~~~~g~P 74 (1029)
+.-|+++.|+++..+.-|+|.|
T Consensus 1708 sv~g~~~~pPP~~rg~~~f~~~ 1729 (1906)
T KOG4822|consen 1708 SVTGMTSYPPPNLRGSHNFSRP 1729 (1906)
T ss_pred cccccccCCCCCCCCCCCCCCC
Confidence 3344555554444444444444
No 105
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=41.56 E-value=9.8e+02 Score=31.66 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.4
Q ss_pred CCCCCccc
Q 001687 201 PVQPTDEQ 208 (1029)
Q Consensus 201 p~~~~~~~ 208 (1029)
|-++++++
T Consensus 672 Pgltpgq~ 679 (1229)
T KOG2133|consen 672 PGLTPGQT 679 (1229)
T ss_pred CCCCCccc
Confidence 44444443
No 106
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=41.00 E-value=1.1e+02 Score=36.43 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH-HHH------HHhhh-ccCCCCCCcHHHHHHH--------------hcCcccc
Q 001687 799 KLIFDDLLIKVKEKEEKEAKKRKRLED-EFF------DLLCS-VKEISATSTWENCRQL--------------LEGSQEF 856 (1029)
Q Consensus 799 k~iFe~li~r~keKee~e~rk~~R~~~-~F~------~lL~~-~~~I~~~stWee~k~~--------------i~~~~ey 856 (1029)
+..|+++++.++.++.++++++.+..+ .++ .+..- ...|- -+|++++.- +.+.-=+
T Consensus 235 rqeyeei~~qAkkre~k~~ker~k~~eer~r~ee~~~~~v~vW~~eIL--pnWe~m~~SrR~relWwQGiP~~VRGkvW~ 312 (586)
T KOG2223|consen 235 RQEYEEIVKQAKKRERKEAKERKKMVEERNRLEERIAYAVNVWENEIL--PNWEDMLKSRRVRELWWQGIPPSVRGKVWS 312 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--cchHHHHhhHHHHHHHHccCChhhcchhhH
Confidence 456888888888777766655544432 232 11111 12343 248877642 3444446
Q ss_pred cccCCh-hhHHHHHHHHHHH
Q 001687 857 SSIGDE-SICRGVFDEFVTQ 875 (1029)
Q Consensus 857 ~~L~~e-~~r~~~F~e~i~~ 875 (1029)
.+|+++ .+-.++|+-++.+
T Consensus 313 laIGNel~it~elfd~~la~ 332 (586)
T KOG2223|consen 313 LAIGNELNITYELFDIALAR 332 (586)
T ss_pred hhhCcccccCHHHHHHHHHH
Confidence 677765 5667788866553
No 107
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=38.57 E-value=1.1e+02 Score=40.52 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=10.9
Q ss_pred CCCCCcHHHHHHHhh
Q 001687 494 VGSDWTWDQALRAII 508 (1029)
Q Consensus 494 V~s~~tWe~a~~~i~ 508 (1029)
|..-.||.++.++-.
T Consensus 1370 vqGPlTWqQfhkmag 1384 (2238)
T KOG3600|consen 1370 VQGPLTWQQFHKMAG 1384 (2238)
T ss_pred ccCcccHHHHHHhhc
Confidence 666678998877653
No 108
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=38.52 E-value=3.1e+02 Score=34.88 Aligned_cols=6 Identities=17% Similarity=0.700 Sum_probs=2.6
Q ss_pred CCCCCC
Q 001687 28 PRGFGP 33 (1029)
Q Consensus 28 pq~f~~ 33 (1029)
+.+|++
T Consensus 937 ~tg~s~ 942 (1106)
T KOG0162|consen 937 ATGYSS 942 (1106)
T ss_pred CCCCCC
Confidence 344443
No 109
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=37.55 E-value=32 Score=40.19 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCCcEEEEcCCCCeeeeccCccccccCCCccc
Q 001687 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 261 (1029)
Q Consensus 230 ~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~ 261 (1029)
..+|+.+.+.+|.+||||++-+.++|-.|.+.
T Consensus 115 l~~~h~~~~~~g~r~F~~~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 115 LAGWHMRFTDTGQRPFYKHILKKTTTLDDREA 146 (358)
T ss_pred ccceeeEecCCCceehhhhhhcCccccCchhh
Confidence 34899999999999999999999999999876
No 110
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=37.43 E-value=83 Score=36.23 Aligned_cols=14 Identities=0% Similarity=-0.076 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHH
Q 001687 864 ICRGVFDEFVTQLK 877 (1029)
Q Consensus 864 ~r~~~F~e~i~~Lk 877 (1029)
.|.++-+++.+..+
T Consensus 263 ~R~~~~~~~~K~~~ 276 (321)
T PF07946_consen 263 NREEEEEKILKEAH 276 (321)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 111
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=36.82 E-value=50 Score=41.53 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001687 589 DRKDMFDDHLDELKQK 604 (1029)
Q Consensus 589 eRe~lFeeyi~~L~kk 604 (1029)
++.+.|..+|..|+++
T Consensus 142 ~~l~~l~~~l~~L~~e 157 (619)
T PF03999_consen 142 EELEELRQHLQRLQEE 157 (619)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888888888764
No 112
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=36.15 E-value=2.7e+02 Score=31.84 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 001687 592 DMFDDHLDELKQKER 606 (1029)
Q Consensus 592 ~lFeeyi~~L~kkEk 606 (1029)
.|=.|||+.|-.+|-
T Consensus 340 ALRDDYVRRLl~kEa 354 (407)
T PF04625_consen 340 ALRDDYVRRLLHKEA 354 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345578887776543
No 113
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=35.85 E-value=13 Score=46.29 Aligned_cols=29 Identities=31% Similarity=0.720 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCeeeeccCccccccCCCcc
Q 001687 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFE 260 (1029)
Q Consensus 232 ~W~e~~d~~Gr~YYyN~~T~~stWe~P~~ 260 (1029)
-|+...+++--+||.|+.|..|+|++|..
T Consensus 353 pw~rais~nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 353 PWERAISPNKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred cchhccCccccchhhcccchhhhccchHH
Confidence 39999999999999999999999999964
No 114
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.70 E-value=3.7e+02 Score=32.45 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=36.7
Q ss_pred cHHHHHHHhhhhhh--hhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001687 635 QWRKVQDRLEADER--CSRL--DKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLME 699 (1029)
Q Consensus 635 ~W~ev~~~l~~D~r--~~~l--~~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~ 699 (1029)
.|..|+..|-..+. .+.+ -..+...+|+++...+.+.+.+-++++++.. +=-++.+.||.
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqkd~k-----~y~~av~am~~ 65 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQKDLK-----NYLDAVRAMLA 65 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 36666665543322 2223 3456789999999999888888777776542 22344555554
No 115
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=35.48 E-value=31 Score=41.10 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHH
Q 001687 269 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 302 (1029)
Q Consensus 269 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 302 (1029)
.++.+|..+...+|-+.||+..|+..+|.+|=.|
T Consensus 154 pLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 154 PLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred cCCCceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 5899999999999999999999999999999766
No 116
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=34.16 E-value=94 Score=39.39 Aligned_cols=7 Identities=43% Similarity=0.620 Sum_probs=3.6
Q ss_pred hhhhhcc
Q 001687 996 ESRHKRH 1002 (1029)
Q Consensus 996 ~~~~~r~ 1002 (1029)
-.|++|+
T Consensus 449 ~t~~~~~ 455 (1064)
T KOG1144|consen 449 ATRTKRA 455 (1064)
T ss_pred hhhhhhc
Confidence 4455555
No 117
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.84 E-value=38 Score=35.65 Aligned_cols=7 Identities=43% Similarity=0.382 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 001687 958 SAHDSLD 964 (1029)
Q Consensus 958 s~~~~~~ 964 (1029)
|+.||.|
T Consensus 210 s~~ds~s 216 (238)
T KOG4520|consen 210 STTDSHS 216 (238)
T ss_pred ccccccc
Confidence 3334433
No 118
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.38 E-value=6.5e+02 Score=27.20 Aligned_cols=57 Identities=26% Similarity=0.375 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHH
Q 001687 734 SGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVK 810 (1029)
Q Consensus 734 ~gStpldLF~D~Veel~~~~~e~K~~i~d~lk~~~i~v~~~wt~eef~~~l~ed~r~~~i~~~~lk~iFe~li~r~k 810 (1029)
=|-...||.-|-|++...-..+.+..|..+| +.|..++ +++..+|...|+.|.....
T Consensus 18 vG~hKRdilvdrVe~Ardsq~eaqeQF~sAL-------------e~f~sl~-------~~~ggdLe~~Y~~ln~~ye 74 (201)
T PF11172_consen 18 VGVHKRDILVDRVEDARDSQQEAQEQFKSAL-------------EQFKSLV-------NFDGGDLEDKYNALNDEYE 74 (201)
T ss_pred hCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhh-------CCCCCcHHHHHHHHHHHHH
Confidence 4677889999999988777777777676655 5666666 3456788888888876553
No 119
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.46 E-value=1.3e+02 Score=35.62 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001687 862 ESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKERE 899 (1029)
Q Consensus 862 e~~r~~~F~e~i~~Lkek~~e~er~r~~~~~~~~~~~e 899 (1029)
+..|.+.-++|.+.+++..-|....|.+|+++.+|++=
T Consensus 369 ~~~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl 406 (440)
T KOG2357|consen 369 DKNRQRVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKL 406 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888887777776555555544344333
No 120
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=30.92 E-value=3.3e+02 Score=35.00 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=25.4
Q ss_pred CCCCCCcHHHHHHHhh--cCcc----ccccCChHHHHHHHHHHHHHHHHHHHH
Q 001687 493 NVGSDWTWDQALRAII--NDRR----YGALRTLGERKTAFNEYLGQKKKQDAE 539 (1029)
Q Consensus 493 ~V~s~~tWe~a~~~i~--~DpR----y~al~~~~ERKqlFeeY~~~~~k~E~e 539 (1029)
|+..-++|.+...+|+ .+-| -++|...+++-+|-+-....+.-++++
T Consensus 634 ~gqtPT~wSkldpK~mKv~~lR~elegral~~KG~Ks~l~~rl~~~l~te~~~ 686 (1194)
T KOG4246|consen 634 GGQTPTTWSKLDPKIMKVVVLRPELEGRALGMKGEKSDLPERLAIPLTTEPKE 686 (1194)
T ss_pred CCCCCCcccccCchhhhhhhhhhhhcccccccccchhhHHHHhhcccccchhh
Confidence 3445567777666654 2322 235666666666655555555444333
No 121
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=30.79 E-value=7.4e+02 Score=27.03 Aligned_cols=42 Identities=26% Similarity=0.475 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001687 655 MDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEAD 701 (1029)
Q Consensus 655 ~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~e~ 701 (1029)
.+.-.+|+++.+.+...+.+-+++.++. ++-.++.+.|+..-
T Consensus 8 ~T~D~~Fe~~errf~~lE~~~~kL~Ke~-----K~Y~dav~~m~~sq 49 (211)
T cd07611 8 ETKDEQFEEYVQNFKRQETEGTRLQREL-----RAYLAAIKGMQEAS 49 (211)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 3455789999988877777777766553 24456666666543
No 122
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.16 E-value=25 Score=36.90 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=14.5
Q ss_pred HHHHHHHhhhcc-CCC--CCCcHHHHHHHhcCc
Q 001687 824 EDEFFDLLCSVK-EIS--ATSTWENCRQLLEGS 853 (1029)
Q Consensus 824 ~~~F~~lL~~~~-~I~--~~stWee~k~~i~~~ 853 (1029)
.+.+-.+|-.+. .|. ..-.-..++.+|+.=
T Consensus 40 ke~lSsFLp~lpG~~~~~~~~d~ssLrslIekP 72 (178)
T PF10278_consen 40 KESLSSFLPHLPGNIDLPGSQDNSSLRSLIEKP 72 (178)
T ss_pred hhhHHHHccCCCCcccCCCCcCcchHHHHhhCC
Confidence 344445555542 232 222355567777653
No 123
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=29.94 E-value=1.1e+03 Score=28.73 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=47.9
Q ss_pred HHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCccccCCChHHH
Q 001687 637 RKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDY 716 (1029)
Q Consensus 637 ~ev~~~l~~D~r~~~l~~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g~I~~~T~W~d~ 716 (1029)
..+...|.+|..+..++..+.++|+..+.....+.....+.. .+.+...+..+++.++.+|..++..-.-++-..=.|+
T Consensus 50 ~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l-~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv 128 (473)
T PF14643_consen 50 EEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKEL-DEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDV 128 (473)
T ss_pred HHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 455666777777777777888888887776554433322221 2234445556667777777776543222233333555
Q ss_pred HHHHh
Q 001687 717 CIKVK 721 (1029)
Q Consensus 717 ~~~ik 721 (1029)
+.+|-
T Consensus 129 ~rli~ 133 (473)
T PF14643_consen 129 ERLIE 133 (473)
T ss_pred HHHHH
Confidence 55543
No 124
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=29.92 E-value=4e+02 Score=28.42 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=8.6
Q ss_pred CCCCChHHHHHHH
Q 001687 733 TSGSTPKDLFEDV 745 (1029)
Q Consensus 733 ~~gStpldLF~D~ 745 (1029)
.+|-.|..||--.
T Consensus 83 ~SgV~p~~lfpS~ 95 (225)
T KOG4848|consen 83 KSGVPPEELFPSA 95 (225)
T ss_pred ccCCChhhhCCCH
Confidence 5777777777543
No 125
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=29.68 E-value=41 Score=40.20 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=33.2
Q ss_pred CCCCCCcEEEEcCCCCeeeeccCccccccCCCcccchh
Q 001687 227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTT 264 (1029)
Q Consensus 227 ~~~~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~~ 264 (1029)
.+.+.+|....-.+|-.-||++.|+..||.+|.-+.+.
T Consensus 153 epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYflGtG 190 (650)
T KOG4334|consen 153 EPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFLGTG 190 (650)
T ss_pred CcCCCceEEEeecCCCceEEeeeeeeEeccCceeeccc
Confidence 44468999999999999999999999999999877554
No 126
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=29.37 E-value=59 Score=37.60 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=40.9
Q ss_pred EcCCCCeeeeccCccccccCCCcccchhhcccCCCCCcEEEECCCCCeEEEeCCCCeeeccCC
Q 001687 237 TSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 299 (1029)
Q Consensus 237 ~d~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P 299 (1029)
.+.+|++|-+|..|++..|+.........-......+-.-..+.+|..|.++..||+..|..+
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred ECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 456799999999999999987431100000001122323334579999999999999999854
No 127
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=29.24 E-value=1.4e+03 Score=29.70 Aligned_cols=31 Identities=23% Similarity=0.523 Sum_probs=21.8
Q ss_pred cccccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 001687 855 EFSSIGDESICRGVFDEFVTQLKEQAKDYER 885 (1029)
Q Consensus 855 ey~~L~~e~~r~~~F~e~i~~Lkek~~e~er 885 (1029)
++..|=++..++.|+..|.+...-..-+.+|
T Consensus 610 ~~~~lls~~~~~~i~~~Fk~~~~~~~~eAkr 640 (742)
T PF05879_consen 610 EFATLLSESQCKSIWRQFKREIDYTYVEAKR 640 (742)
T ss_pred cceEeccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445545788899999998877766666643
No 128
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=28.77 E-value=9.1e+02 Score=27.48 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCC
Q 001687 71 AGFPSQPLQPPFR 83 (1029)
Q Consensus 71 ~g~Pp~~~~~~~~ 83 (1029)
.|||.-+++|+||
T Consensus 109 dgMpgG~~~PGFF 121 (354)
T KOG4594|consen 109 DGMPGGPVPPGFF 121 (354)
T ss_pred CCCCCCCCCCccc
Confidence 3455545555566
No 129
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.20 E-value=1.2e+02 Score=41.02 Aligned_cols=10 Identities=20% Similarity=0.301 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 001687 799 KLIFDDLLIK 808 (1029)
Q Consensus 799 k~iFe~li~r 808 (1029)
..+|++.++-
T Consensus 1292 D~l~~~a~~~ 1301 (1355)
T PRK10263 1292 DPLFDQAVQF 1301 (1355)
T ss_pred cHHHHHHHHH
Confidence 3445544443
No 130
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=26.97 E-value=55 Score=42.80 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=6.2
Q ss_pred CCCcEEEECC
Q 001687 271 STDWKEFTSP 280 (1029)
Q Consensus 271 ~~~W~e~~~~ 280 (1029)
...|.++.|.
T Consensus 265 ~~l~~~ird~ 274 (2365)
T COG5178 265 PMLWESIRDV 274 (2365)
T ss_pred cccHHHhccc
Confidence 4567777664
No 131
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=25.58 E-value=3.3e+02 Score=36.61 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 001687 739 KDLFEDVVEELQ 750 (1029)
Q Consensus 739 ldLF~D~Veel~ 750 (1029)
+|+.=.+|..|+
T Consensus 923 ~d~LPQlVQALK 934 (1639)
T KOG0905|consen 923 LDYLPQLVQALK 934 (1639)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 132
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=25.24 E-value=2.2e+02 Score=26.58 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhc
Q 001687 613 RKRNIIEYRKFLESC 627 (1029)
Q Consensus 613 rkka~~ef~~lL~~~ 627 (1029)
.|+++..|+.||+.+
T Consensus 4 ~k~nL~af~~yi~kt 18 (89)
T cd08816 4 EKRNLQRFRDYIKKI 18 (89)
T ss_pred HHHHHHHHHHHHHHh
Confidence 467889999999864
No 133
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=24.53 E-value=57 Score=38.19 Aligned_cols=10 Identities=0% Similarity=0.471 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 001687 863 SICRGVFDEF 872 (1029)
Q Consensus 863 ~~r~~~F~e~ 872 (1029)
+..+++|+.|
T Consensus 421 ~vmkea~e~~ 430 (498)
T KOG2573|consen 421 DVMKEAMEAY 430 (498)
T ss_pred HHHHHHHHHh
Confidence 3444455443
No 134
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=24.44 E-value=1.4e+03 Score=31.72 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHH
Q 001687 548 ARDDYKKMLEESVELTSSTRWSKAVT 573 (1029)
Q Consensus 548 are~F~~lLee~~~I~~~trW~~a~~ 573 (1029)
.-++|..++..++ ++..-|...+.
T Consensus 1443 saeDferlvrssP--NSSi~WI~YMa 1466 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSP--NSSILWIRYMA 1466 (1710)
T ss_pred CHHHHHHHHhcCC--CcchHHHHHHH
Confidence 5688988888753 56677876554
No 135
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.15 E-value=3.8e+02 Score=36.66 Aligned_cols=6 Identities=50% Similarity=1.005 Sum_probs=2.3
Q ss_pred HHHHHH
Q 001687 741 LFEDVV 746 (1029)
Q Consensus 741 LF~D~V 746 (1029)
||.+.|
T Consensus 1294 l~~~a~ 1299 (1355)
T PRK10263 1294 LFDQAV 1299 (1355)
T ss_pred HHHHHH
Confidence 343333
No 136
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=24.15 E-value=2e+02 Score=25.85 Aligned_cols=20 Identities=30% Similarity=0.616 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHH---HHHHHHHH
Q 001687 681 EELSKTERKNRD---EFRKLMEA 700 (1029)
Q Consensus 681 ~~~rR~eRK~Rd---~Fk~LL~e 700 (1029)
...++.+|+.|+ .|-.||.+
T Consensus 41 ~~~~~~erk~rEKnksFeELL~e 63 (70)
T PF13025_consen 41 RARRREERKEREKNKSFEELLNE 63 (70)
T ss_pred HHHHHHHHHHHHhhcCHHHHHhc
Confidence 344555666664 59999986
No 137
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=24.00 E-value=71 Score=23.11 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.6
Q ss_pred ECCCCCeEEEeCCCCeeeccCC
Q 001687 278 TSPDGRKYYYNKVTKQSKWSLP 299 (1029)
Q Consensus 278 ~~~~Gr~YyyN~~T~es~We~P 299 (1029)
.+.+|..|-+|..||+..|..+
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEcC
Confidence 3468999999999999999753
No 138
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=23.93 E-value=19 Score=41.68 Aligned_cols=8 Identities=75% Similarity=1.223 Sum_probs=3.6
Q ss_pred cccccccC
Q 001687 950 KKHRKRHQ 957 (1029)
Q Consensus 950 ~k~rkr~~ 957 (1029)
.+|+|||+
T Consensus 207 ~~~~Krhk 214 (425)
T KOG1869|consen 207 SKHRKRHK 214 (425)
T ss_pred hHHHHHhh
Confidence 34444443
No 139
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=23.61 E-value=6.4e+02 Score=31.31 Aligned_cols=150 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred cccCChHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccc-hhh
Q 001687 514 GALRTLGERKTAFNEY-----------LGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFEND-ERF 581 (1029)
Q Consensus 514 ~al~~~~ERKqlFeeY-----------~~~~~k~E~eekr~~~kkare~F~~lLee~~~I~~~trW~~a~~~~~~D-prf 581 (1029)
++|+...|--.+|++| .++.-+.....+-.+.++.|+..+..+... +|.-.-.--+.+++|+.- +||
T Consensus 12 r~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~-dIKDK~~L~d~RrlIE~~MErf 90 (575)
T KOG2150|consen 12 RCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSS-DIKDKDSLLDNRRLIEQRMERF 90 (575)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHHHHHHHHHHH
Q ss_pred hccCCh------------------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 001687 582 KALERE------------------------RDRKDMFDDHLDELKQK----ERAKAQEERKRNIIEYRKFLESCDFIKAN 633 (1029)
Q Consensus 582 kav~~e------------------------~eRe~lFeeyi~~L~kk----Eke~~~~~rkka~~ef~~lL~~~~~I~~~ 633 (1029)
++|+++ +|-.+.....|++|+++ |-+...+...+.+-.-..|=--+..+...
T Consensus 91 K~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~ 170 (575)
T KOG2150|consen 91 KAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDND 170 (575)
T ss_pred HHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred CcHHHHHHHhhhhhhh-----hcCCchhHHHHHHHH
Q 001687 634 TQWRKVQDRLEADERC-----SRLDKMDRLEIFQEY 664 (1029)
Q Consensus 634 T~W~ev~~~l~~D~r~-----~~l~~~DrlelFed~ 664 (1029)
..=.+....+++|-+| +.-+.++.+.||.+.
T Consensus 171 E~~pe~v~~vqDdi~yyVe~nqdpdF~e~e~iYd~l 206 (575)
T KOG2150|consen 171 ELDPEAVNKVQDDITYYVESNQDPDFLEDETIYDDL 206 (575)
T ss_pred ccCHHHHhhhhHHHHHHHHhccCchhhhhhHHhhcc
No 140
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=23.37 E-value=1.2e+03 Score=26.95 Aligned_cols=6 Identities=50% Similarity=0.523 Sum_probs=2.4
Q ss_pred CCCCCC
Q 001687 72 GFPSQP 77 (1029)
Q Consensus 72 g~Pp~~ 77 (1029)
|-|+|.
T Consensus 283 ~ep~q~ 288 (389)
T KOG2932|consen 283 GEPQQF 288 (389)
T ss_pred CCCCCC
Confidence 334433
No 141
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=23.22 E-value=2.9e+02 Score=28.29 Aligned_cols=115 Identities=17% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhccccCCCCCCcCcccccccccCCCCcccccccccCCCCCCCC
Q 001687 885 RKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLD 964 (1029)
Q Consensus 885 r~r~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~k~rkr~~s~~~~~~ 964 (1029)
|..+-.++.+.|+-......-.-+.-+.-+.++.+++++..+-..++|.-+.+.+... .-+.+.+++
T Consensus 55 RT~qLkk~l~~Ke~d~~~~q~~g~~eVe~~~KK~rrK~~tS~SsSsS~ss~SDsSssS-------------sE~ssSS~S 121 (177)
T KOG3116|consen 55 RTQQLKKKLRTKEDDDEEEQTNGKAEVEKRSKKSRRKHRTSDSSSSSESSDSDSSSSS-------------SEYSSSSDS 121 (177)
T ss_pred HHHHHHHHHhhcccccHHHhhcchhHHHHhhhhhhhcccccccccccccccccccccc-------------ccccccccc
Q ss_pred hhhhccCCCCCCCCCCCCCCCcCCCCCCCcc-------hhhhhccccccCCCCCC
Q 001687 965 ENEKDRSKNPHRHNSDRKKPRRLASTPESEN-------ESRHKRHRRDNRNGSRK 1012 (1029)
Q Consensus 965 ~~~~~~~k~~~~~~~~~k~~r~~~~~~~s~~-------~~~~~r~~~~~~~~~~~ 1012 (1029)
|+.+.+..++.+..+.+.-....+..+||++ +.+.+|.+...+-.--+
T Consensus 122 eDs~~~~s~s~~se~~ss~sSsSssdSdS~s~s~s~s~~~~~~r~~~sp~~s~k~ 176 (177)
T KOG3116|consen 122 EDSRRRRSKSKKSERRSSYSSSSSSDSDSESASDSDSDEDRSRRKKKSPRHSNKR 176 (177)
T ss_pred cccccccccccccccccccccCCCCccccccccccCCccchhhhccCCCcccccc
No 142
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=23.03 E-value=1.8e+03 Score=28.95 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred CCCChHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001687 734 SGSTPKDLFEDVVEELQKQFQEDKTRIKDAVK 765 (1029)
Q Consensus 734 ~gStpldLF~D~Veel~~~~~e~K~~i~d~lk 765 (1029)
-.-++..|-...|+++.++-.+.-++++.+.|
T Consensus 660 e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~K 691 (988)
T KOG2072|consen 660 EKLDADQIKARQIEELEKERKELQSRLQYQEK 691 (988)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466667777788887776665555554443
No 143
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=22.56 E-value=7.3e+02 Score=30.15 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=27.6
Q ss_pred ChHHHHHHH-hcChhhhhhhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001687 712 NWRDYCIKV-KDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 766 (1029)
Q Consensus 712 ~W~d~~~~i-kdd~rf~~l~~g~~gStpldLF~D~Veel~~~~~e~K~~i~d~lk~ 766 (1029)
-|.++|..+ ..+-||.++- ...|=+++.++.+..|+.+--+-.+|.|+
T Consensus 475 GFSEVyKAFDl~EqRYvAvK-------IHqlNK~WrdEKKeNYhKHAcREyrIHKe 523 (775)
T KOG1151|consen 475 GFSEVYKAFDLTEQRYVAVK-------IHQLNKNWRDEKKENYHKHACREYRIHKE 523 (775)
T ss_pred cHHHHHHhcccchhheeeEe-------eehhccchhhHhhhhHHHHHHHHHhhhhc
Confidence 366666665 3555666642 23455677777777776654333445554
No 144
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=22.30 E-value=2e+03 Score=29.33 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=57.6
Q ss_pred CCCCCcHHHHHHHhhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHH-H-
Q 001687 494 VGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSK-A- 571 (1029)
Q Consensus 494 V~s~~tWe~a~~~i~~DpRy~al~~~~ERKqlFeeY~~~~~k~E~eekr~~~kkare~F~~lLee~~~I~~~trW~~-a- 571 (1029)
+-..|..+.+++.|-+|=-|.+..+ +--++|+.||... .|....+|.+ +
T Consensus 379 ~~~NW~~e~vl~llKt~~~f~~~~~--~~iD~lEnYvl~~---------------------------GI~G~~kw~k~f~ 429 (1108)
T COG3857 379 KRYNWRYEPVLNLLKTDVLFDSNES--EDIDLLENYVLAA---------------------------GIKGKKKWTKLFT 429 (1108)
T ss_pred HHhccchhHHHHHHHhcccccccch--HHHHHHHHHHHHh---------------------------ccccchhhhhHhh
Confidence 4567788888887777755554433 6677888888643 3666667766 2
Q ss_pred HHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001687 572 VTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCD 628 (1029)
Q Consensus 572 ~~~~~~Dprfkav~~e~eRe~lFeeyi~~L~kkEke~~~~~rkka~~ef~~lL~~~~ 628 (1029)
...|.+ +....-..+++.+++.-|..=++-..++.-+.-..+|..+|+...
T Consensus 430 ~~~~~~------~~~~~~lne~r~~il~pL~~l~~~sr~kt~~~~~~al~~~Le~~~ 480 (1108)
T COG3857 430 YEHFRK------IENLERLNETRLDILHPLETLLKMSRAKTVKELAQALYEFLEEGR 480 (1108)
T ss_pred HHHhhc------hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 223333 222333456677777776654441222223334556667776543
No 145
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.30 E-value=1.8e+03 Score=28.62 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=23.2
Q ss_pred ccccccCCCHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 001687 768 KITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL 806 (1029)
Q Consensus 768 ~i~v~~~wt~eef~~~l~ed~r~~~i~~~~lk~iFe~li 806 (1029)
.|++..-.++++|.++|... +-+++-+|.+.++
T Consensus 389 pfti~~Pk~yeef~~Ll~k~------s~ed~~lIVeRI~ 421 (823)
T KOG2147|consen 389 PFTIECPKNYEEFLALLEKL------SLEDMPLIVERIR 421 (823)
T ss_pred CeeecCCcCHHHHHHHHHcc------ChhhhHHHHHHHH
Confidence 37788888899999999654 3355556655554
No 146
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=21.95 E-value=1.1e+02 Score=35.93 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=41.3
Q ss_pred cEEEEcCCCCeeeeccCccccccCCCcccchhhcccCCCCCcEEEECCCCCeEEEeCCCCeeeccC
Q 001687 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSL 298 (1029)
Q Consensus 233 W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~ 298 (1029)
.--..+.+|++|=+|..|++..|..+..............+-.-+.+.+|..|.+|..||+..|..
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 333445578888888888888887654211000000112333444567899999999999999974
No 147
>PHA03151 hypothetical protein; Provisional
Probab=21.91 E-value=76 Score=33.89 Aligned_cols=16 Identities=44% Similarity=0.848 Sum_probs=8.6
Q ss_pred CcCCCCCCCcc-hhhhh
Q 001687 985 RRLASTPESEN-ESRHK 1000 (1029)
Q Consensus 985 r~~~~~~~s~~-~~~~~ 1000 (1029)
++-++|.+||+ +-|||
T Consensus 224 ~risSS~dSdde~Pr~k 240 (259)
T PHA03151 224 HRISSSTDSDDEEPRHK 240 (259)
T ss_pred ccccccccccccccccc
Confidence 44455666666 34443
No 148
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=21.62 E-value=3.6e+02 Score=28.07 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001687 865 CRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREE 900 (1029)
Q Consensus 865 r~~~F~e~i~~Lkek~~e~er~r~~~~~~~~~~~e~ 900 (1029)
++.-=.+|...+..+..+++|.+.+|+.+...+.++
T Consensus 52 rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~ 87 (157)
T PF15236_consen 52 RRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEE 87 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334445677778888888887777666554434433
No 149
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.55 E-value=1.6e+03 Score=27.93 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=10.2
Q ss_pred HhHHHHHHHHHHHh
Q 001687 689 KNRDEFRKLMEADV 702 (1029)
Q Consensus 689 K~Rd~Fk~LL~e~~ 702 (1029)
.+|+.|+.=|..-+
T Consensus 238 ~~r~~F~~eL~~Ai 251 (546)
T KOG0977|consen 238 DNREYFKNELALAI 251 (546)
T ss_pred cchHHHHHHHHHHH
Confidence 67888888776544
No 150
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=21.52 E-value=64 Score=34.12 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=44.3
Q ss_pred cEEEEcCCCCeeeeccCccccccCCCcccchhhcccCCCCCcEEEECCCCCeEEEeCCCCeeeccC
Q 001687 233 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSL 298 (1029)
Q Consensus 233 W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~ 298 (1029)
.--..+.+|.+|-||..||+..|........... .....+-.-+.+.+|..|.+|..||+..|..
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeecccccccccceeeeEecccCCcceeeee
Confidence 3333357899999999999999987652211110 1222333344557889999999999999994
No 151
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=21.51 E-value=50 Score=41.46 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=31.5
Q ss_pred CCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHHHH
Q 001687 270 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 307 (1029)
Q Consensus 270 ~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~e 307 (1029)
...+|...+..+--+||.|+.|..++|+.|.-..+...
T Consensus 350 vq~pw~rais~nkvpyyinh~~q~t~wdhp~~tel~q~ 387 (966)
T KOG4286|consen 350 VQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQS 387 (966)
T ss_pred CcccchhccCccccchhhcccchhhhccchHHHHHHHH
Confidence 34579999999889999999999999999976554433
No 152
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=20.52 E-value=1.3e+02 Score=36.25 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHhhcCccccCCChHHH
Q 001687 690 NRDEFRKLMEADVALGTLTAKTNWRDY 716 (1029)
Q Consensus 690 ~Rd~Fk~LL~e~~~~g~I~~~T~W~d~ 716 (1029)
+|-+|..|++.+.. -+-.+.++|+-+
T Consensus 544 AkVDf~qL~DNL~q-lErrCKaSWe~L 569 (817)
T KOG1925|consen 544 AKVDFEQLTDNLGQ-LERRCKASWESL 569 (817)
T ss_pred hhccHHHHHHHHHH-HHHHhhHHHHHH
Confidence 34445555555432 223344444433
No 153
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=20.18 E-value=2.3e+02 Score=32.16 Aligned_cols=48 Identities=10% Similarity=0.248 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCccccCCChHHHHHHHhcChhhhhhhcCCCCCChHHHHHHHHHHHHHHh
Q 001687 694 FRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQF 753 (1029)
Q Consensus 694 Fk~LL~e~~~~g~I~~~T~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Veel~~~~ 753 (1029)
++.||.++...|+|+ .++|.+||..++... |.++. ...+||.+++.+.
T Consensus 102 LRRlLKklRd~gKID-kh~YR~LYrKAKGn~-FKNK~----------~L~e~I~k~KaE~ 149 (357)
T PTZ00436 102 LRRLLRKYREEKKID-RHIYRELYVKAKGNV-FRNKR----------NLMEHIHKVKNEK 149 (357)
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHhcCCc-cCcHH----------HHHHHHHHHHHHH
Confidence 345777777778886 577899998888753 54442 2256666665443
No 154
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=20.13 E-value=3.8e+02 Score=32.16 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=28.1
Q ss_pred ccccccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001687 511 RRYGALRTL---GERKTAFNEYLGQKKKQDAEERRLKLKKARDDY 552 (1029)
Q Consensus 511 pRy~al~~~---~ERKqlFeeY~~~~~k~E~eekr~~~kkare~F 552 (1029)
|-+.--+.. ..-+|.|++-+.+.+|.|+.+++.+.+...+.+
T Consensus 220 PS~LPaKsaeEa~kHrqeyeei~~qAkkre~k~~ker~k~~eer~ 264 (586)
T KOG2223|consen 220 PSNLPAKSAEEAKKHRQEYEEIVKQAKKRERKEAKERKKMVEERN 264 (586)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433332 345689999999999888877766665555544
No 155
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=20.02 E-value=1.5e+03 Score=27.66 Aligned_cols=11 Identities=27% Similarity=0.235 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 001687 480 EAKNAFKALLE 490 (1029)
Q Consensus 480 EAk~aFk~LL~ 490 (1029)
+-...|.+||.
T Consensus 408 ~~vqqfy~lLt 418 (605)
T KOG4217|consen 408 LHVQQFYDLLT 418 (605)
T ss_pred HHHHHHHHHhh
Confidence 34567888885
No 156
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=20.00 E-value=1.4e+02 Score=34.94 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCeeeeccCccccccCCCcccchhhcccCCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001687 232 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (1029)
Q Consensus 232 ~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 300 (1029)
+.--..+.+|.+|=+|..||+..|..+...... .......+-.-+.+.+|..|-+|..||+..|..+.
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL-SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCcee-cCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 344445667999999999999999887532110 00011122233345689999999999999999864
Done!