Query 001687
Match_columns 1029
No_of_seqs 408 out of 1140
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 16:07:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001687.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_985-989//hhsearch_pdb/001687hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hfh_A Transcription elongatio 1.0 1 1 315.2 12.2 187 477-666 3-190 (190)
2 3hfh_A Transcription elongatio 1.0 1 1 215.7 10.9 184 547-747 6-190 (190)
3 2l5f_A PRE-mRNA-processing fac 1.0 1 1 149.3 8.3 77 229-305 12-88 (92)
4 2jxw_A WW domain-binding prote 1.0 1 1 145.8 6.6 73 229-301 3-75 (75)
5 2dod_A Transcription elongatio 1.0 1 1 138.7 6.1 69 474-543 12-80 (82)
6 1uzc_A Hypothetical protein FL 1.0 1 1 137.1 6.3 65 471-535 7-71 (71)
7 1o6w_A PRP40, PRE-mRNA process 1.0 1 1 135.3 4.2 71 231-301 2-72 (75)
8 2b7e_A PRE-mRNA processing pro 1.0 1 1 128.5 4.3 56 478-533 2-59 (59)
9 2kxq_A E3 ubiquitin-protein li 1.0 1 1 127.4 8.1 73 229-301 10-87 (90)
10 1tk7_A CG4244-PB; WW domain, n 1.0 1 1 125.4 6.4 71 230-300 14-87 (88)
No 1
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=1.00 E-value=1 Score=315.19 Aligned_cols=187 Identities=22% Similarity=0.459 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999997289999885999999863584433568937999999999999988789999999888699999999
Q 001687 477 NKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKML 556 (1029)
Q Consensus 477 tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~~~ERKq~FeeYi~~~~k~E~eekr~~~kkare~F~~lL 556 (1029)
|+++|+.+|++||++++|+++|+|+++|+.|++||||++| +.++||++|++||.++.++++++++.+.++++++|.+||
T Consensus 3 s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL 81 (190)
T 3hfh_A 3 LGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMM 81 (190)
T ss_dssp CSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999876939999001044441168203317-868888899999999999999999988888999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 87105899877899999730363433147768999999999999999999999999999899999998531034678858
Q 001687 557 EESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQW 636 (1029)
Q Consensus 557 ~e~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lFeeyi~~Lkkkeke~~k~~rkka~~~f~~lL~~~~~I~~~T~W 636 (1029)
+++ .|+++++|.+|..+|.+||||+++.++.+|+.+|++||..|+++++++.+..+++++.+|.+||.++ .|++.|+|
T Consensus 82 ~e~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~W 159 (190)
T 3hfh_A 82 EEA-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRW 159 (190)
T ss_dssp --------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCCH
T ss_pred HHC-CCCCCCCHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCH
T ss_conf 974-7899998999999927884154074636799999999999888788999999876799999999767-99988889
Q ss_pred HHHHHHHHHHHHHHCCCCH-HHHHHHHHHHH
Q ss_conf 9999986341662149910-09999999999
Q 001687 637 RKVQDRLEADERCSRLDKM-DRLEIFQEYLN 666 (1029)
Q Consensus 637 ~ev~~~l~~D~r~~~l~~~-drleiFed~I~ 666 (1029)
.+|+..|.+|++|.+|... ++++||++||.
T Consensus 160 ~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 160 SXVXDXVESDPRYXAVDSSSMREDLFXQYIE 190 (190)
T ss_dssp HHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCHHHHCCCCHHHHHHHHHHHHC
T ss_conf 9999987109276618988899999999859
No 2
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=1.00 E-value=1 Score=215.74 Aligned_cols=184 Identities=20% Similarity=0.396 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86999999998710589987789999973036343314776899999999999999999999999999989999999853
Q 001687 547 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLES 626 (1029)
Q Consensus 547 kare~F~~lL~e~~~i~~~trW~~a~~~~~~Dprfkav~~e~eRe~lFeeyi~~Lkkkeke~~k~~rkka~~~f~~lL~~ 626 (1029)
.+..+|+.||.++ +|+++++|.++...|.+||||.+| +..+|+++|++|+..+.+.++++.+...+.++++|..||.+
T Consensus 6 e~~~~F~~lL~~~-~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e 83 (190)
T 3hfh_A 6 ARMXQFXDMLLER-GVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEE 83 (190)
T ss_dssp HHHHHHHHHHHHT-TCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCCCCHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999876-939999001044441168203317-86888889999999999999999998888899999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1034678858999998634166214991-009999999999999999999999999977998786899999999976348
Q 001687 627 CDFIKANTQWRKVQDRLEADERCSRLDK-MDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALG 705 (1029)
Q Consensus 627 ~~~I~~~T~W~ev~~~l~~D~r~~~l~~-~drleiFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g 705 (1029)
.. |++.++|.++...|.+|+||.++.. .++..+|++||..|.+.+.+.++. .-++++++|..||.++
T Consensus 84 ~~-i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~-------~r~~~~~~f~~lL~~~---- 151 (190)
T 3hfh_A 84 AX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXT-------RGEXIXSDFFELLSNH---- 151 (190)
T ss_dssp ------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHH-------THHHHHHHHHHHHHTS----
T ss_pred CC-CCCCCCHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC----
T ss_conf 47-89999899999992788415407463679999999999988878899999-------9876799999999767----
Q ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 656677768999897069034652128999996799999999
Q 001687 706 TLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 747 (1029)
Q Consensus 706 ~I~~~T~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Ve 747 (1029)
.|+..|+|.++...|.+|++|.++. +.+..++||++||+
T Consensus 152 ~l~~~t~W~~~~~~l~~D~ry~~v~---~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 152 HLDSQSRWSXVXDXVESDPRYXAVD---SSSMREDLFXQYIE 190 (190)
T ss_dssp CCCTTCCHHHHHHHHSSSHHHHTSC---CHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHCHHHHCCC---CHHHHHHHHHHHHC
T ss_conf 9998888999999871092766189---88899999999859
No 3
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=149.29 Aligned_cols=77 Identities=45% Similarity=0.894 Sum_probs=71.2
Q ss_pred CCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEECCCCEEECCCCHHHHHH
Q ss_conf 99995799858998132116766534579854200000037999948987799983777289980324588688999
Q 001687 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 305 (1029)
Q Consensus 229 ~~~~W~e~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~~~~~~ 305 (1029)
...+|+++++++||+||||+.|++|+|++|.++..+.+++.++++|+++.+.+||+||||+.|++|+|++|..+..+
T Consensus 12 lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~~ 88 (92)
T 2l5f_A 12 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDL 88 (92)
T ss_dssp TTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHHHTS
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCHHHHHH
T ss_conf 99883898869999899989977240035744455322333466628888799988999897998665495667565
No 4
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=145.81 Aligned_cols=73 Identities=33% Similarity=0.708 Sum_probs=68.1
Q ss_pred CCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEECCCCEEECCCCHH
Q ss_conf 9999579985899813211676653457985420000003799994898779998377728998032458868
Q 001687 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (1029)
Q Consensus 229 ~~~~W~e~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~~ 301 (1029)
+.++|+++++++||+||||+.|++|+|++|.+++...++..+..+|.++.+.+||+||||+.|++|+|++|++
T Consensus 3 ~~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCCCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCC
T ss_conf 7887689897999989898977878615887545344456788647988999999899989699982569598
No 5
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=1.00 E-value=1 Score=138.74 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=64.4
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1048999999999999728999988599999986358443356893799999999999998878999999
Q 001687 474 AYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRL 543 (1029)
Q Consensus 474 ~~~tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~~~ERKq~FeeYi~~~~k~E~eekr~ 543 (1029)
.+.+++||+.+|++||++++|+++|||+++|++|++||||++|+ +.+||++|++||.++.++|++++|.
T Consensus 12 ~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eereekr~ 80 (82)
T 2dod_A 12 AIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRSGPS 80 (82)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSSCSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54999999999999998749598998999999871697620479-8899999999999999999999874
No 6
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=1.00 E-value=1 Score=137.09 Aligned_cols=65 Identities=48% Similarity=0.744 Sum_probs=61.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 54310489999999999997289999885999999863584433568937999999999999988
Q 001687 471 EHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKK 535 (1029)
Q Consensus 471 e~~~~~tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~~~ERKq~FeeYi~~~~k 535 (1029)
+++.|+|++||+++|++||++++|+++|+|+++|++|++||||++|+++++||++|++||.++.|
T Consensus 7 ~~~~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r~k 71 (71)
T 1uzc_A 7 KTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEK 71 (71)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 88788999999999999998759598997999999872595501159888999999999998639
No 7
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=1.00 E-value=1 Score=135.32 Aligned_cols=71 Identities=41% Similarity=0.830 Sum_probs=65.9
Q ss_pred CCCEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEECCCCEEECCCCHH
Q ss_conf 99579985899813211676653457985420000003799994898779998377728998032458868
Q 001687 231 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (1029)
Q Consensus 231 ~~W~e~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~~ 301 (1029)
++|+++++++||+||||+.|++|+|++|.++....+...++.+|+++.+.+|++||||+.|++|+|+.|..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCEEEECCCCCEEEEECCCCCEEEECCHHHCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEECCCCCC
T ss_conf 98759898999969998999978852552101111135788758987989999899989899887779897
No 8
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=1.00 E-value=1 Score=128.52 Aligned_cols=56 Identities=25% Similarity=0.523 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HCCCCCCCCCC-HHHHHHHHHHHHHHH
Q ss_conf 999999999999728999988599999986-35844335689-379999999999999
Q 001687 478 KLEAKNAFKALLESANVGSDWTWDQALRAI-INDRRYGALRT-LGERKTAFNEYLGQK 533 (1029)
Q Consensus 478 keEAk~aFk~LL~e~~V~s~~tWe~a~~~i-~~DpRy~al~~-~~ERKq~FeeYi~~~ 533 (1029)
++||+++|++||++++|+|+|||+++|+.| ++||||++|+| +.+||++|++|+.+|
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~r 59 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 59 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 1689999999999859899983999999861689761005688899999999987449
No 9
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=1.00 E-value=1 Score=127.43 Aligned_cols=73 Identities=21% Similarity=0.475 Sum_probs=64.0
Q ss_pred CCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCH-----HHCCCCCCCCCEEEECCCCCEEEEECCCCEEECCCCHH
Q ss_conf 99995799858998132116766534579854200-----00003799994898779998377728998032458868
Q 001687 229 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT-----TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 301 (1029)
Q Consensus 229 ~~~~W~e~~~~~Gr~YYyN~~T~~stWe~P~~~~~-----~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~~ 301 (1029)
...+|+++++.+||+||||+.|++|+|++|..... ..+...++.+|+++.|.+|++||||+.|++|+|+.|..
T Consensus 10 LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 10 LPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCEECCCCCC
T ss_conf 997938989899989989799981862446441111355753233457885599889999999989999581679886
No 10
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=1.00 E-value=1 Score=125.43 Aligned_cols=71 Identities=17% Similarity=0.547 Sum_probs=62.9
Q ss_pred CCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCHHH---CCCCCCCCCEEEECCCCCEEEEECCCCEEECCCCH
Q ss_conf 999579985899813211676653457985420000---00379999489877999837772899803245886
Q 001687 230 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTI---ERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 300 (1029)
Q Consensus 230 ~~~W~e~~~~~Gr~YYyN~~T~~stWe~P~~~~~~~---e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~ 300 (1029)
..+|+++++++||+||||+.|++|+|++|....... ....++.+|+++.|.+|++||||+.|++|+|+.|.
T Consensus 14 P~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 14 PDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCC
T ss_conf 97838989799988999899997675513244554322112466786289988999999998999828688897
Done!