Query 001688
Match_columns 1028
No_of_seqs 381 out of 1510
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:57:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4427 E3 ubiquitin protein l 100.0 8E-186 2E-190 1558.0 60.4 978 18-1028 2-1096(1096)
2 KOG0942 E3 ubiquitin protein l 100.0 4E-161 9E-166 1394.8 68.0 942 17-1028 1-1001(1001)
3 KOG0941 E3 ubiquitin protein l 100.0 2E-88 4.3E-93 788.2 27.7 487 518-1027 336-849 (850)
4 COG5021 HUL4 Ubiquitin-protein 100.0 5.6E-87 1.2E-91 807.6 34.1 350 667-1028 516-872 (872)
5 cd00078 HECTc HECT domain; C-t 100.0 2.6E-81 5.7E-86 715.9 33.8 348 667-1026 2-352 (352)
6 smart00119 HECTc Domain Homolo 100.0 5.2E-78 1.1E-82 681.8 32.8 330 688-1028 4-336 (336)
7 KOG0939 E3 ubiquitin-protein l 100.0 2.4E-78 5.2E-83 690.9 29.3 381 627-1028 331-720 (720)
8 KOG0170 E3 ubiquitin protein l 100.0 3.5E-71 7.5E-76 609.6 27.0 393 623-1028 164-621 (621)
9 PF00632 HECT: HECT-domain (ub 100.0 3.5E-64 7.7E-69 568.3 23.1 304 721-1028 1-317 (317)
10 KOG0940 Ubiquitin protein liga 100.0 1.2E-50 2.6E-55 452.4 11.9 335 667-1020 18-358 (358)
11 KOG0943 Predicted ubiquitin-pr 100.0 5.9E-36 1.3E-40 347.8 23.6 262 754-1025 2739-3014(3015)
12 PF00612 IQ: IQ calmodulin-bin 97.5 8.7E-05 1.9E-09 49.1 3.1 21 46-66 1-21 (21)
13 smart00015 IQ Short calmodulin 96.9 0.00068 1.5E-08 47.4 2.4 22 45-66 2-23 (26)
14 KOG0377 Protein serine/threoni 77.9 2.3 5E-05 49.0 4.0 23 46-68 17-39 (631)
15 PTZ00014 myosin-A; Provisional 71.9 6.3 0.00014 50.6 6.2 32 38-69 769-800 (821)
16 KOG1419 Voltage-gated K+ chann 63.5 6.2 0.00013 47.1 3.4 35 28-62 322-356 (654)
17 PTZ00014 myosin-A; Provisional 61.5 11 0.00024 48.4 5.5 27 39-65 793-819 (821)
18 KOG0164 Myosin class I heavy c 55.7 19 0.0004 44.4 5.5 27 44-70 694-720 (1001)
19 PF08763 Ca_chan_IQ: Voltage g 49.2 17 0.00037 27.4 2.5 22 47-68 10-31 (35)
20 KOG0163 Myosin class VI heavy 43.3 18 0.0004 44.5 3.0 28 43-70 810-837 (1259)
21 KOG0160 Myosin class V heavy c 36.7 53 0.0012 42.1 5.7 36 28-63 678-713 (862)
22 KOG0160 Myosin class V heavy c 31.3 64 0.0014 41.5 5.2 30 45-74 717-746 (862)
23 KOG0164 Myosin class I heavy c 21.2 2.5E+02 0.0054 35.2 7.3 62 28-91 701-762 (1001)
No 1
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-186 Score=1558.01 Aligned_cols=978 Identities=30% Similarity=0.466 Sum_probs=837.3
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccCCChHH
Q 001688 18 RSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNR---QCFGPQSA 94 (1028)
Q Consensus 18 ~S~~e~~r~~lL~q~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~r~efd~~~~~~~~~~~~---~~~~~~~~ 94 (1028)
.+..+++|++||+|+++|||+|+.+|||++||++||++||||++|++++.+|+++||.+|..+..+.++ ....|...
T Consensus 2 ~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~ 81 (1096)
T KOG4427|consen 2 FSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLERVARPFLP 81 (1096)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHhhhHHH
Confidence 344558999999999999999999999999999999999999999999999999999999988865433 33345667
Q ss_pred hhhhheeeeccCCcccHHHHHHHHHHHHHHHhhcCCccccccccccccc-chhHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 001688 95 FFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSK-RALVDFRVKKFAFACIQAVHQNRKELKDQL 173 (1028)
Q Consensus 95 ~lr~llFf~~~~~~~D~~rL~~lc~~ll~s~~~~~~~~~~~~~~~~~~~-~~~W~~qiKkll~lC~~~l~~~~~~lk~~~ 173 (1028)
++|.+++.++.+ ..|.+||+++||+|+.+|++++|.+.+||++++++| ...|+.|||+++++|++.|.+ ++||.
T Consensus 82 var~ll~q~r~i-e~~~e~~~~iCr~il~smds~n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~e----ln~Er 156 (1096)
T KOG4427|consen 82 VARSLLVQHRKI-EAREERLEQICRKILLSMDSENDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTE----LNPER 156 (1096)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHHhhcCCCCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHh----cCHHH
Confidence 899999999877 234899999999999999999999999999999999 999999999999999988888 99999
Q ss_pred cCCCCCCCCcchhHHHHhhhcc--------------CCCchhHHHHHHHHHhcchHHHHHHHHHccCCCcccccccCCcc
Q 001688 174 FVTPEESNTPPTLLLEAVVFLI--------------DSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRIS 239 (1028)
Q Consensus 174 ~~~~~~~al~~l~~L~~ft~~~--------------~~~~~~~~~i~~~L~~~g~y~~Lr~ll~~~~~~~~~~~~~~~~~ 239 (1028)
..|+...++. +|+|++|||++ ++|+.+|++||||++|+|||+.+|.+|.+++.+.+.. + ...
T Consensus 157 ~ad~~~~all-l~~livfTdpksWkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~--l-~~~ 232 (1096)
T KOG4427|consen 157 IADSIVNALL-LHILIVFTDPKSWKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPR--L-VIT 232 (1096)
T ss_pred HHHHHHHHHH-HHeeeEEeCCcceeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcc--e-eee
Confidence 9999999999 99999999999 7788899999999999999999999999999776653 2 256
Q ss_pred hHHHHHHHHcccccCCCCCCCCCCchhhhhhhhcchhhhhhccchhhHHHhhhccchhhHHHHHHhhhcccccCCccccc
Q 001688 240 SLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSM 319 (1028)
Q Consensus 240 ~l~~l~tl~~r~~~~~~~~~~~~~~~~~f~~~IlsIP~L~~~~p~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (1028)
++++.+++.+||+.+. ++ ++++...|.+.|||||+|..|+|+..++.....-+..+.+++++++.........+.+.
T Consensus 233 Tl~a~~sl~~rpvk~~--nf-sd~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~~l~d~~~~ee~~tsm 309 (1096)
T KOG4427|consen 233 TLAATFSLRLRPVKQP--NF-SDNLVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILNILRDMENSEEQSTSM 309 (1096)
T ss_pred ehhhhhhhccccccCC--ch-HHHHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcCC
Confidence 8999999999999988 66 77889999999999999999999866654444444556667777777766666667789
Q ss_pred CcchHHHHHHHHHHhhhhccCCCCcccccchhHHHHHHHHHhhC-CCCCCC--CccC--------CCCCCCCCCCCCCcc
Q 001688 320 ELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAL-PPIKSS--RESS--------MVSDDDMTAGDEVME 388 (1028)
Q Consensus 320 ~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~~~v~~~lL~~l-~~~~~~--~~~~--------~~~~dd~~~~~~~~~ 388 (1028)
++|+.+|+||||+++|+. ++.+...++...++..|++.|.+| ++.++. +.+. |....-|...+..+.
T Consensus 310 e~~~~l~llgNiv~la~i--s~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~~s~~~ek~~n~~i~ 387 (1096)
T KOG4427|consen 310 EGPSVLWLLGNIVHLATI--SETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGWTSNETEKGNNVKIS 387 (1096)
T ss_pred cccHhHHHHhhhheeeec--CcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhccccCCCCCccchhHH
Confidence 999999999999999996 444444444456999999999999 665541 2221 222222111000000
Q ss_pred c--------------------------------c-ccchhhhh--hhhHHHHHHHHHH--HHHHHhhhccc-CCC-CCCC
Q 001688 389 P--------------------------------V-INRDLEKQ--ITSAIDSRFLLQL--TNVLFSGFHLL-RGP-HDEG 429 (1028)
Q Consensus 389 ~--------------------------------~-~~~~~~~~--~~~~~~~~~L~~~--v~~ll~~~~~~-~~~-~~~~ 429 (1028)
. . ..+..+++ ...+.++++++.. ++..+.++... ..+ +++.
T Consensus 388 ~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk~~~~~~~l~~v~ss~~~~~~~k~ 467 (1096)
T KOG4427|consen 388 LVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRKSCVMGPVLGPVPSSNMLSFCPKW 467 (1096)
T ss_pred HHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHHhcccCCccCCCccchhhhccccc
Confidence 0 0 00101100 0112222222221 12222222221 000 4567
Q ss_pred CCchhhhHHHHHHHHHHHHHhhchh--hHHHHHHhchhhHHHHHHHHHHHhhccCCCCC--C--C--------------C
Q 001688 430 PGDKEVAAVGAACAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKWPF--L--P--------------Y 489 (1028)
Q Consensus 430 ~~~~~~~~v~~~c~~~~~~l~~l~~--~~iL~~Laf~~~ll~~LW~~i~~~~~~~~~~~--l--s--------------~ 489 (1028)
.+++++..+..+|..|++.++|+.+ .+|+++|+|.+++++.+|.+|...++..+-.. . + .
T Consensus 468 ~s~~~v~lv~~iC~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~~~gs~~~~~~~k~~~ev~~~l~s 547 (1096)
T KOG4427|consen 468 NSSAEVLLVENICTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGPQPGSGQVNESTKDVLEVETLLGS 547 (1096)
T ss_pred cCcccceehhhhhhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCCCCCccccchhHHHHHhHHHHhCC
Confidence 7889999999999999999999988 89999999999999999999999998765211 1 0 1
Q ss_pred CCCCCCcchhhHHhHHHHHhhhhccccchhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCcccCCCCCCCC
Q 001688 490 LSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANK 569 (1028)
Q Consensus 490 ~~~~~~~~~~~L~lFc~l~s~~L~ildD~Ef~~~~~Pfsl~el~~ls~~L~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~ 569 (1028)
....+.+..++|.+||+||.|+++|+||+|||++|.||.++|+..++.+||.++|+++| .+.++++.
T Consensus 548 ~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~---------~g~v~eak---- 614 (1096)
T KOG4427|consen 548 PTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIW---------DGTVPEAK---- 614 (1096)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH---------cccchhhh----
Confidence 11456778899999999999999999999999999999999999999999999999999 45665542
Q ss_pred CChhHHHHhHHHHHHHHHHHHHhhccccCCCCCCCCcccccCChhh-hhhhhccccchhhhhhcCCccccccchHHHHHH
Q 001688 570 MLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFF-ISQATIDGTRANEILKQAPFLVPFTSRAKIFQS 648 (1028)
Q Consensus 570 ~~~~~~~~~~~~~~~~~ll~~l~~rd~r~~f~p~~~w~~~~~~~~~-~~~~~~~~~~~~~il~~~Pf~~pf~~Rv~~f~~ 648 (1028)
.....+|.+++++|..||+|||||+|+|++||+++++++.- ..+-+....++..++..+||+||+++||.+||.
T Consensus 615 -----~~t~~lF~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~a~lll~~mpHviP~edRv~lFR~ 689 (1096)
T KOG4427|consen 615 -----QLTTGLFDSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPTADLLLTKMPHVIPHEDRVLLFRE 689 (1096)
T ss_pred -----hHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhcccceeEeccCCcccChHHHHHHHHH
Confidence 23455999999999999999999999999999999998643 333333346677889999999999999999999
Q ss_pred HHHHHHHhcCCC-----CCCccceEEEeCCchHHHHHHHhcCCCcccccCcEEEEEEeccCcccccccCCCchHHHHHHH
Q 001688 649 QLASVRQRHGSH-----GVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENI 723 (1028)
Q Consensus 649 ~~~~~~~~~~~~-----~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l 723 (1028)
+++++|...+.. .+-.+..|+|||++|+||+|+|+++++...+|+.++|+|+||.|++|+|||.||++|||++++
T Consensus 690 fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLeei 769 (1096)
T KOG4427|consen 690 FVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEI 769 (1096)
T ss_pred HHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccCCcccccCccchHHHHHHHH
Confidence 999999776543 222234899999999999999999999889999999999999999999999999999999999
Q ss_pred HHHhhcccCCCccccC-cceEeeCCCCCCchhhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCC--CCCccc
Q 001688 724 TRAAFDVQYGLFKETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN--YLNDLP 800 (1028)
Q Consensus 724 ~~~~f~p~~~lF~~~~-~~~l~pnp~~~~~~~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~--~l~DL~ 800 (1028)
.|.+|||++|||..|+ |..+||+|+++ .+++|+++|+|+|||+|||+|+|+++|+||+++|+.+++|... .+|+|+
T Consensus 770 iKkvFdp~lnLFstTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs 848 (1096)
T KOG4427|consen 770 IKKVFDPELNLFSTTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELS 848 (1096)
T ss_pred HHHHhcccccccccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhcc
Confidence 9999999999999998 89999999998 7899999999999999999999999999999999999999987 899999
Q ss_pred CCChhhHHHHHHHhhcccccccceeeEEEEeccCCcceeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001688 801 SLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFL 880 (1028)
Q Consensus 801 ~~Dp~l~~~L~~L~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~ 880 (1028)
++|||+|+||.++|+|+||+.||+|+|++++|..|+..++||+|||+.++||++||.+|||.|++|+++++|++|+.||.
T Consensus 849 ~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA~~rmnrqi~eqt~Af~ 928 (1096)
T KOG4427|consen 849 SLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMAHFRMNRQIVEQTNAFY 928 (1096)
T ss_pred ccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhchhhhhcCCCHHHHHHhhcCCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHh-hCCHHHHHhhceeecCcC
Q 001688 881 RGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLK-SFSLENQKKFLKFVTGCS 959 (1028)
Q Consensus 881 ~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~-~~s~eer~~fL~FvTG~s 959 (1028)
+||.++|.|+||++|+|.|||.||+|...+||++||++||+|.|||+.+|++|+|||+|++ +|++|||+.||||||+||
T Consensus 929 rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTSCS 1008 (1096)
T KOG4427|consen 929 RGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTSCS 1008 (1096)
T ss_pred HHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred CCCCCCcccCCCceEEecCCCCC-------------------CCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHH
Q 001688 960 RGPLLGFKYLEPLFCIQRAAGSA-------------------SEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN 1020 (1028)
Q Consensus 960 r~P~~Gf~~L~p~f~I~~~~~~~-------------------~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~ 1020 (1028)
|+|+.||++|+|||.|+++..+. .+++.+||||||||||+||||+|+.+.+|||||+|||+
T Consensus 1009 rpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKLPnY~kkStlreKLrYAIs 1088 (1096)
T KOG4427|consen 1009 RPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKLPNYKKKSTLREKLRYAIS 1088 (1096)
T ss_pred CCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhCCCcchhHHHHHHHHHHhh
Confidence 99999999999999999654211 14688999999999999999999999999999999999
Q ss_pred cCCCccCC
Q 001688 1021 AEAGFDLS 1028 (1028)
Q Consensus 1021 ~~~GF~Ls 1028 (1028)
+|+|||||
T Consensus 1089 sntGFELS 1096 (1096)
T KOG4427|consen 1089 SNTGFELS 1096 (1096)
T ss_pred cCCCcccC
Confidence 99999998
No 2
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-161 Score=1394.77 Aligned_cols=942 Identities=39% Similarity=0.595 Sum_probs=782.8
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCChHHhh
Q 001688 17 GRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFF 96 (1028)
Q Consensus 17 G~S~~e~~r~~lL~q~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~r~efd~~~~~~~~~~~~~~~~~~~~~l 96 (1028)
|+|++ .+|+.+|.+|++||.+|+++|||+++|+++|++||||++|++++...|++||.+...+.++ ..+..++
T Consensus 1 g~~~~-~er~~~l~r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~fd~~~~~~~~~------e~~~~~~ 73 (1001)
T KOG0942|consen 1 GASSL-NERDNLLRRAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEFDAVSTRSRGG------EELTKLA 73 (1001)
T ss_pred CCcch-hhHHHHHHHHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------hhHHHHH
Confidence 77888 8999999999999999999999999999999999999999999999999999988766522 2277899
Q ss_pred hhheeeeccCCcccHHHHHHHHHHHHHHHhhcCCcccccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhhccccCC
Q 001688 97 RQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVT 176 (1028)
Q Consensus 97 r~llFf~~~~~~~D~~rL~~lc~~ll~s~~~~~~~~~~~~~~~~~~~~~~W~~qiKkll~lC~~~l~~~~~~lk~~~~~~ 176 (1028)
|+|+|||... +|.+||+|+|+.|++- ....+.. ....|..|.|+++..|+ -+.+|| .++
T Consensus 74 ~~L~~Fy~~~--~D~~rli~~~~nl~~~---~~~~i~~--------s~~~~~~~~k~l~~~c~-~~l~n~-------~~d 132 (1001)
T KOG0942|consen 74 RLLVFFYETN--KDSERLIMVLQNLLKQ---KTRLIEF--------SKRTRLTQLKLLLRKCQ-RLLQNR-------NDD 132 (1001)
T ss_pred HHHHHHhhcc--cccHHHHHHHHHHHHH---HHHhhhh--------hccchHHHHHHHHHHHH-HHHHhh-------hhh
Confidence 9999999888 9999999999988883 2223322 24889999999999888 777777 233
Q ss_pred CCCCCCcchhHHHHhhhcc-------C--CCchhHHHHHHHHHhcchHHHHHHHHHccCCCcccccccCCcchHHHHHHH
Q 001688 177 PEESNTPPTLLLEAVVFLI-------D--SRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTL 247 (1028)
Q Consensus 177 ~~~~al~~l~~L~~ft~~~-------~--~~~~~~~~i~~~L~~~g~y~~Lr~ll~~~~~~~~~~~~~~~~~~l~~l~tl 247 (1028)
.--.++| ++|++++|+.. + ...++++.|++|+.+++||..+|.+++.+.++....+.....+.+++++.+
T Consensus 133 ~l~~~~p-~~ll~~~~~~~~~~~~~~d~~~~~~~v~~i~ay~~k~~y~~~lr~l~~~~~~s~~~~s~~~n~~~~e~ll~l 211 (1001)
T KOG0942|consen 133 TLFQAIP-RRLLESFTSHSSLVRLLKDLGLFNQEVHLILAYLGKRTYYTSLRALLNSKKLSLLGRSFETNVLPLESLLSL 211 (1001)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhccccchhhHHHHhhhccccccccccCCCCChHHHHHHH
Confidence 3336788 99999999988 3 377899999999999999999999999999998877778889999999999
Q ss_pred HcccccCCCCCCCCCCchhhhhhhhcchhhhhhccch-hhHHHhhhccchhhHHHHHHhhhcccccCCcccccCcchHHH
Q 001688 248 IIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPY-IKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYAC 326 (1028)
Q Consensus 248 ~~r~~~~~~~~~~~~~~~~~f~~~IlsIP~L~~~~p~-~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~ 326 (1028)
+++|....+|+|+..+++++|...|++.|.+|..+|. ..+.+ ++. ..+..++.+.+
T Consensus 212 vl~~~~~~k~~c~~~d~~~sf~~~~la~d~~~~~~~~~~~~~~--------------------~~~---~~~~~~~~~~~ 268 (1001)
T KOG0942|consen 212 VLLPLRLAKTACTNGDLNFSFTILILAKDHISPIFCPFFLPLF--------------------AAM---KTSDPLELWEV 268 (1001)
T ss_pred hccccchhccccccccccccchHHHHhcccchhhccccchhHH--------------------hhh---hccccchHHHH
Confidence 9998888888999999999999999999999888733 11222 211 22356667788
Q ss_pred HHHHHHHhhhhccC---CCCcccccchhHHHHHHHHHhhC-CCCCCCCccC----CCCCCCCCCCCCCc--cccccchhh
Q 001688 327 LLGNILETAGVALS---QPDCSFEMGVDLAAITTFLLKAL-PPIKSSRESS----MVSDDDMTAGDEVM--EPVINRDLE 396 (1028)
Q Consensus 327 lL~Nl~~l~~~~l~---~~~~~~~~~~~~~~v~~~lL~~l-~~~~~~~~~~----~~~~dd~~~~~~~~--~~~~~~~~~ 396 (1028)
++++.+..+.-.-+ .+.+..-+....+..|.+++..+ +++. .++.. ..++||+...+... +..+-+ ..
T Consensus 269 ~~~~al~s~~~i~s~~~~~~l~~l~q~~~~~~y~~~l~~~L~pv~-~~s~~~r~~~~~dd~~es~d~~~~v~n~l~~-~~ 346 (1001)
T KOG0942|consen 269 ALESALESAGSIKSGVSQNVLVLLHQSYLLLQYFNFLAEFLPPVS-HESAIMRHLSVKDDDEESDDEDKSVPNHLKP-YC 346 (1001)
T ss_pred HHHHHHhhhcchhhcccchhhhhhhhhhHHHHHHHHHHHHcCCcC-CCCcchhhccccchhhhccccchhhhhhchH-HH
Confidence 88877755543221 23333333345666688888888 7333 22221 12222222112211 111101 11
Q ss_pred hhh-------hhHHHHHHH-HHHHHHHHhhhcccCCCCCCCCCchhhhHHHHHHHHHHHHH----hhchhhHHHHHHhch
Q 001688 397 KQI-------TSAIDSRFL-LQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAF----NTLPLECIMTVLAYR 464 (1028)
Q Consensus 397 ~~~-------~~~~~~~~L-~~~v~~ll~~~~~~~~~~~~~~~~~~~~~v~~~c~~~~~~l----~~l~~~~iL~~Laf~ 464 (1028)
.+. ..+|+...+ ++.|..+.+..+. ++.....+.++|++||+++ +..|..++++.+||.
T Consensus 347 ~~~~~~~~~r~~~cl~~~~~~~qv~~iis~~~~---------~~~~~~~i~~~~~~~~sl~~~~~~~~p~~rll~~laf~ 417 (1001)
T KOG0942|consen 347 EQMSASNSSRRAACLYANLEKRQVDEIISSTDY---------DKAFEDLIANLNTFCHSLYAQIAKLVPLGRLLYILAFS 417 (1001)
T ss_pred HhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHhhh
Confidence 121 223332212 5667777777665 6666889999999999987 344559999999999
Q ss_pred hhHHHHHHHH--HHHhhccCCCCC-CC--------CCC--CCCCcchhhHHhHHHHHhhhhccccchhhhccCCCCCHHH
Q 001688 465 TELVQLLWHY--MKRCHEIRKWPF-LP--------YLS--GDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKD 531 (1028)
Q Consensus 465 ~~ll~~LW~~--i~~~~~~~~~~~-ls--------~~~--~~~~~~~~~L~lFc~l~s~~L~ildD~Ef~~~~~Pfsl~e 531 (1028)
+.++..+|.. +.++......++ ++ ..+ ....+.++++.+||.+|+|+|.+++|.|||+..++.....
T Consensus 418 ~~~~~~~~f~~~~~~~s~~~~~~s~vp~L~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~L~s~~d~Ef~e~~~~~~~~~ 497 (1001)
T KOG0942|consen 418 PKLNAELWFTNCLARRSESMADGSSVPQLIFISFGVTPEFLLDDRIIPLLLLFSTMFRRMLYSGHDKEFMEDPKTLWKPV 497 (1001)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhHHhhccCCchhhccccchhhHHHHHHHHHHhhhhcccHHHHhcCccccchhh
Confidence 9999999955 888877654333 22 111 4456788999999999999999999999999886655553
Q ss_pred HH-HHHHHHHHHHHHHhhcCCCCCCcc-CcccCCCCCCCCCCh--hHHHHhHHHHHHHHHHHHHhhccccCCCCCCC---
Q 001688 532 IR-HLIVILREALWHLLWLNPTSHPNV-GKSVSSPPPANKMLP--AEAIQHRVSTVASEVLSQLQDWNNRREFVPPS--- 604 (1028)
Q Consensus 532 l~-~ls~~L~~~l~~l~~~~p~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~l~~rd~r~~f~p~~--- 604 (1028)
+. .++..++.+.|.++|..|..+++. .+.++... .+..+ ....++...+++.+++.++++||.|+.|||+.
T Consensus 498 ~m~e~i~~lk~l~d~~l~~~~la~~~t~~~~~g~~~--~r~~~~~~~~~~n~~~~v~~e~l~~~~~rd~r~~f~~~~e~~ 575 (1001)
T KOG0942|consen 498 MMPELILLLKYLKDILLWLVPLAFPNTREKVVGITE--SRRMPLRQRRRWNGRLQVVRELLTELSERDNRKEFCPSKERP 575 (1001)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccccCcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Confidence 33 556666777788889888877776 33333332 12222 12223457889999999999999999999981
Q ss_pred CcccccCChhhhhhhhccccchhhhhhcCCccccccchHHHHHHHHHHHHHhcCCCCCCccc---eEEEeCCchHHHHHH
Q 001688 605 DFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRS---RFRIRRDHILEDAYS 681 (1028)
Q Consensus 605 ~w~~~~~~~~~~~~~~~~~~~~~~il~~~Pf~~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~---~i~VrR~~i~eda~~ 681 (1028)
..-++..+..|.........|++.||.++||++||+.||++|+++++.+|++.+++++|.++ .++|||++|+||||+
T Consensus 576 dl~sd~~~e~~~~l~~~lr~R~l~IL~e~PF~vPF~~RVklfq~lla~dKq~~~~~~~F~~g~s~~~tIRRd~iyeDAfd 655 (1001)
T KOG0942|consen 576 DLKSDDENELFNPLPSFLRFRALCILKEIPFFVPFEERVKLFQRLLALDKQRHGGDGPFGMGFSPSATIRRDHIYEDAFD 655 (1001)
T ss_pred cccccchHHhhcchHhhhhhHHHHHHHcCCeeechHHHHHHHHHHHHHHHHhhcCCCCccCCCCccEEEehhhhHHHHHH
Confidence 22222222222222233447899999999999999999999999999999999999889887 899999999999999
Q ss_pred HhcCCCcccccCcEEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCCCccccCcceEeeCCCCCCchhh-HhHHH
Q 001688 682 QMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQ-HLQFF 760 (1028)
Q Consensus 682 ~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~~~f~p~~~lF~~~~~~~l~pnp~~~~~~~~-~l~~f 760 (1028)
++++.+..++|..+||+|+||.|++|+||||||++|||++++++++|||++|+|+.|+++.+||||++..+.+. ++++|
T Consensus 656 ~f~p~~e~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~~lLYPNp~~~~l~~~~~lkhy 735 (1001)
T KOG0942|consen 656 AFSPKGEPDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETEDHLLYPNPTAAMLLDVDCLKHY 735 (1001)
T ss_pred hcCccCCcccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeecccceecCCCCchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887766 99999
Q ss_pred HHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCC--CCCcccCCChhhHHHHHHHhhccc-ccccceeeEEEEeccCCcc
Q 001688 761 HFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEA-DISELELYFVILNNEYGEQ 837 (1028)
Q Consensus 761 ~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~--~l~DL~~~Dp~l~~~L~~L~~~~~-dv~~l~L~Ft~~~~~~g~~ 837 (1028)
+|+|+++|||||+|+++++|||.||++||+|.+. +++||.++||++|++|.+||+|+| |+++|+|+|||..+++|+.
T Consensus 736 ~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~ 815 (1001)
T KOG0942|consen 736 YFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGER 815 (1001)
T ss_pred HHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEeccccccc
Confidence 9999999999999999999999999999999998 999999999999999999999988 7899999999999999999
Q ss_pred eeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhchhhhhcCCCHHHHHHhhcCCCCCCCHHHHh
Q 001688 838 TEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLR 917 (1028)
Q Consensus 838 ~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~dl~ 917 (1028)
++|||+|||++++||++|+.+|||+|++|+||.+|+.|+.||++||..|||++|++||++.|||.||+|.+++||++|||
T Consensus 816 ~vVeLkPnGs~i~VTneNvi~YihLVsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr 895 (1001)
T KOG0942|consen 816 QVVELKPNGSKIRVTNENVIEYIHLVSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLR 895 (1001)
T ss_pred eeEEeccCCccceeechhhhhhhHHhhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceeCCCCCCCcHHHHHHHHHHhhCCHHHHHhhceeecCcCCCCCCCcccCCCceEEecCCCCCCCcCCCCCceeeccc
Q 001688 918 QNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCM 997 (1028)
Q Consensus 918 ~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~Gf~~L~p~f~I~~~~~~~~~~~~~~LPtA~TCf 997 (1028)
+||+|.|||+++||+|.+||||+++|+.|+|++||||||||||+|+.|||+|.|+|||+++|. +++|||||+||+
T Consensus 896 ~~teY~Ggy~~~hp~Iv~FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~P~FcI~n~gs-----d~~RLPTASTCm 970 (1001)
T KOG0942|consen 896 KNTEYAGGYSPDHPTIVMFWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALDPAFCIRNAGS-----DDDRLPTASTCM 970 (1001)
T ss_pred hhccccCCCCCCCCchhHHHHHHHhcchHHHHHHHHHHhcCCCcccccchhcCccceeeeCCC-----ccccCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999996 889999999999
Q ss_pred CeeccCCCCCHHHHHHHHHHHHHcCCCccCC
Q 001688 998 NLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 1028 (1028)
Q Consensus 998 n~L~LP~Y~s~e~l~ekL~~AI~~~~GF~Ls 1028 (1028)
|+||||+|++++.||+||+|||++|+|||||
T Consensus 971 NLLKLP~y~~kt~LreKLlYAI~sgAGFeLS 1001 (1001)
T KOG0942|consen 971 NLLKLPPYSNKTLLREKLLYAINSGAGFELS 1001 (1001)
T ss_pred HHhcCCCcccHHHHHHHHHHHHhcccCCCCC
Confidence 9999999999999999999999999999998
No 3
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-88 Score=788.19 Aligned_cols=487 Identities=32% Similarity=0.528 Sum_probs=412.6
Q ss_pred hhhhccC-CCCCHHHHHHHHHHHHHHH---HHHhhcCCCCCCccCcccCCCC--C-CCCCChhHHHHhHHHHHHHHHHHH
Q 001688 518 EEFYEQE-KPLSLKDIRHLIVILREAL---WHLLWLNPTSHPNVGKSVSSPP--P-ANKMLPAEAIQHRVSTVASEVLSQ 590 (1028)
Q Consensus 518 ~Ef~~~~-~Pfsl~el~~ls~~L~~~l---~~l~~~~p~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~ll~~ 590 (1028)
...|... .||.-+ +..++.-.+..+ |..+. |......++++.+.. + ..+.. .......++++..++..
T Consensus 336 s~~~~s~~vp~~~~-i~~~~~~~~~~l~~~~~~~~--~k~~~~~v~~f~~~V~~~l~~~~~--~~~e~~~i~~~l~~~~l 410 (850)
T KOG0941|consen 336 SNEYNSLNVPFADA-ICIVAENKRLKLVEYWNQLS--PKYFRKLVSMFKEAVTEILKFSKE--LAEENKGIRSALKLLEL 410 (850)
T ss_pred HHHHHhccCcHHHH-HHHhhcchHHHHHHHHHHhc--hhhcchhhhchhhHHHHhhhccch--hhhhccchhhHHHHHHH
Confidence 3334433 578644 666666666666 55544 555555455554331 0 00111 11124467888999999
Q ss_pred HhhccccCCCCCCCCcccccCChhhhhhhhccc----cchhhhhhcCCccccccchHHHHHHHHHHHHHhcC--------
Q 001688 591 LQDWNNRREFVPPSDFHADGVNDFFISQATIDG----TRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHG-------- 658 (1028)
Q Consensus 591 l~~rd~r~~f~p~~~w~~~~~~~~~~~~~~~~~----~~~~~il~~~Pf~~pf~~Rv~~f~~~~~~~~~~~~-------- 658 (1028)
||..|+|++.+|.+.||+++++..+..+.|... ...-..+++|||+++-.+|.++++... ..+|...
T Consensus 411 ly~vN~~~~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc~ypFIL~~~aK~~lL~yD~-rlrM~~~~~~a~~~s 489 (850)
T KOG0941|consen 411 LYKVNCRKGLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFCNYPFILNAVAKIELLQYDA-RLRMESERRKAFLSS 489 (850)
T ss_pred HHHHhccCCCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceeecCCeecccHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999887764433333221 111467899999999999999997421 1111111
Q ss_pred ---CCCCCccc--eEEEeCCchHHHHHHHhcCCCcccccCcEEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCC
Q 001688 659 ---SHGVFTRS--RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYG 733 (1028)
Q Consensus 659 ---~~~~~~~~--~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~~~f~p~~~ 733 (1028)
..+...+. .++|||++|++||+++++..+..|+||+|+|+|+| |+|+|+|||+||||.++.+++|+|.||
T Consensus 490 ~~~~~~~~~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~g-----E~g~DaGGv~kEfF~ll~~ei~~p~~G 564 (850)
T KOG0941|consen 490 LFQGLQLLVSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVG-----EEGVDAGGVRKEFFQLLVEEIFNPEYG 564 (850)
T ss_pred HHhhccCCCCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECC-----CcccccCchHHHHHHHHHHHHcCcccc
Confidence 11100111 89999999999999999999999999999999999 899999999999999999999999999
Q ss_pred CccccCcc-eEeeCCCCCCchhhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCCCCCcccCCChhhHHHHHH
Q 001688 734 LFKETSDH-LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIF 812 (1028)
Q Consensus 734 lF~~~~~~-~l~pnp~~~~~~~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~ 812 (1028)
||.+.++. .+|.+|.... ...+|+++|++||+||||...+++|||.++||||++++++++||.++.|.+|++|+.
T Consensus 565 mF~~~e~s~~~WF~~~~~~----~~~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~ 640 (850)
T KOG0941|consen 565 MFTYDEESSLLWFNPSPFE----EEKQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKE 640 (850)
T ss_pred CeecccccceeeecCCCCC----ccceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHH
Confidence 99998764 5666666532 124899999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccc-cccc-ceeeEEEEeccCCcceeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhchhh
Q 001688 813 LKHYEA-DISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKD 890 (1028)
Q Consensus 813 L~~~~~-dv~~-l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vip~~ 890 (1028)
|++|+| |++| ++++|++..+.+|...++||+|||.+|+||++||+|||.+|++|.+|++|++|++||++||++|+..+
T Consensus 641 lL~y~gdd~ed~f~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~ 720 (850)
T KOG0941|consen 641 LLDYEGDDVEDVFDLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDEN 720 (850)
T ss_pred HHhccccchhhheeeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchh
Confidence 999987 7754 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHhhcCCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHhhCCHHHHHhhceeecCcCCCCCCCcccCC
Q 001688 891 WIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLE 970 (1028)
Q Consensus 891 ~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~Gf~~L~ 970 (1028)
.+.+|.|+||+.+|||+++ +||+.|+++|+|+|||+++||+|+|||+++++|+.++|++||+|+||++|+|++|.+.+
T Consensus 721 ~l~lf~peEl~~li~G~~~-~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l- 798 (850)
T KOG0941|consen 721 LLRLFQPEELEKLICGSED-YDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL- 798 (850)
T ss_pred hhhhcCHHHHHHHHhCCCc-cCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhc-
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999999988
Q ss_pred CceEEecCCCCCCCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHHcCCCccC
Q 001688 971 PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDL 1027 (1028)
Q Consensus 971 p~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~GF~L 1027 (1028)
++.|++.|+ ++++||+||||||.|.||+|+|+|.|++||+.||++++||+|
T Consensus 799 -~~~i~~~~~-----~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~~~GF~l 849 (850)
T KOG0941|consen 799 -KLVIQKNGP-----DEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINNTEGFGL 849 (850)
T ss_pred -eEEEecCCC-----CcccCcchhhhhhhhhccccCcHHHHHHHHHHHHHhccCcCC
Confidence 699999986 689999999999999999999999999999999999999987
No 4
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-87 Score=807.56 Aligned_cols=350 Identities=41% Similarity=0.742 Sum_probs=338.7
Q ss_pred eEEEeCCchHHHHHHHhcCCCcccccCcEEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCCCccccCcc--eEe
Q 001688 667 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH--LLY 744 (1028)
Q Consensus 667 ~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~~~f~p~~~lF~~~~~~--~l~ 744 (1028)
+|+|||+++++|+++++...++.++|+.|+|+|+| |+|||+||++||||..+++++|+|++++|.++.+. .++
T Consensus 516 ~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~-----EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~~~ 590 (872)
T COG5021 516 HIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVG-----EEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYTLP 590 (872)
T ss_pred EEEEecccchHHHHHHHHHhchhhhcceEEEEecC-----cccccCCccchHHHHHHhHHhcCCcccceeeecccccccC
Confidence 89999999999999999999988888899999999 89999999999999999999999999999987654 467
Q ss_pred eCCCCCCchhhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCCCCCcccCCChhhHHHHHHHhhcccccccce
Q 001688 745 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELE 824 (1028)
Q Consensus 745 pnp~~~~~~~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~L~~~~~dv~~l~ 824 (1028)
|||.+. ++++|+++|+|+|++||+||||++.+|++|+.+|||+|||++++++|+.++||++|++|+||++++.|...++
T Consensus 591 ~n~~s~-~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~l~ 669 (872)
T COG5021 591 INPLSS-INPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDETILD 669 (872)
T ss_pred cCcccc-CCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcceee
Confidence 888886 7899999999999999999999999999999999999999999999999999999999999999988877899
Q ss_pred eeEEEEeccCCcceeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhchhhhhcCCCHHHHHHhh
Q 001688 825 LYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLI 904 (1028)
Q Consensus 825 L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li 904 (1028)
++|++..+.+|+.++|||||||++|+||++||.+||++|++|+++++|++|++||..||.+|||++|+.||+++||+.||
T Consensus 670 l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI 749 (872)
T COG5021 670 LTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLI 749 (872)
T ss_pred eeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHhhCCHHHHHhhceeecCcCCCCCCCcccCCC-----ceEEecCC
Q 001688 905 SGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAA 979 (1028)
Q Consensus 905 ~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~Gf~~L~p-----~f~I~~~~ 979 (1028)
||.+++||++|||+||.|. ||++++++|.|||+++++|+.|+|++|||||||++|+|+.||+.|+| +|+|++++
T Consensus 750 ~G~~e~iDidd~K~~T~Y~-GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~g 828 (872)
T COG5021 750 GGIPEDIDIDDWKSNTAYH-GYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKGG 828 (872)
T ss_pred CCCCccccHHHHhhccccc-ccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeecCC
Confidence 9999889999999999996 79999999999999999999999999999999999999999999999 89999998
Q ss_pred CCCCCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHHcCCCccCC
Q 001688 980 GSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 1028 (1028)
Q Consensus 980 ~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~GF~Ls 1028 (1028)
. +++|||+||||||+|+||+|+|||+||+||.+||++|+||+++
T Consensus 829 ~-----~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~Eg~GFg~~ 872 (872)
T COG5021 829 T-----DDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAGFGLL 872 (872)
T ss_pred C-----ccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHhccCcCcC
Confidence 6 8889999999999999999999999999999999999999984
No 5
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=2.6e-81 Score=715.93 Aligned_cols=348 Identities=49% Similarity=0.825 Sum_probs=334.3
Q ss_pred eEEEeCCchHHHHHHHhcCCCcccccCcEEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCCCccccCc--ceEe
Q 001688 667 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLY 744 (1028)
Q Consensus 667 ~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~~~f~p~~~lF~~~~~--~~l~ 744 (1028)
+|+|||++|++|+++++...++.+++++++|+|+| |+|+|+|||+||||+++++++++|+++||..+++ +.+|
T Consensus 2 ~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~ 76 (352)
T cd00078 2 KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVG-----EEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLY 76 (352)
T ss_pred eEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECC-----CCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEE
Confidence 68999999999999999998878899999999998 8999999999999999999999999999999887 7899
Q ss_pred eCCCCCCchhhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCCCCCcccCCChhhHHHHHHHhhcccccccce
Q 001688 745 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELE 824 (1028)
Q Consensus 745 pnp~~~~~~~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~L~~~~~dv~~l~ 824 (1028)
|||.+.. .++++++|+++|+++|+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|+++++++++++
T Consensus 77 ~~p~~~~-~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~ 155 (352)
T cd00078 77 PNPSSFA-DEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLE 155 (352)
T ss_pred eCCCccc-chhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhc
Confidence 9999863 356789999999999999999999999999999999999999999999999999999999999887788999
Q ss_pred eeEEEEecc-CCcceeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhchhhhhcCCCHHHHHHh
Q 001688 825 LYFVILNNE-YGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 903 (1028)
Q Consensus 825 L~Ft~~~~~-~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~l 903 (1028)
|+|++..+. .|...++||+|||++++||.+||++||+++++|+++++++.|++||++||++|+|.+++++|+|+||+.+
T Consensus 156 l~F~~~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~l 235 (352)
T cd00078 156 LTFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235 (352)
T ss_pred ceeEEEEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHH
Confidence 999998776 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHhhCCHHHHHhhceeecCcCCCCCCCcccCCCceEEecCCCCCC
Q 001688 904 ISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSAS 983 (1028)
Q Consensus 904 i~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~Gf~~L~p~f~I~~~~~~~~ 983 (1028)
+||.++ ||+++|++|++|.|||+.++++|+|||+++++||+|||++||+|+|||+|+|++||+.++|+|+|++.+.
T Consensus 236 vcG~~~-id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~--- 311 (352)
T cd00078 236 ICGSED-IDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGS--- 311 (352)
T ss_pred hCCCCC-CCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCC---
Confidence 999976 9999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 001688 984 EEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFD 1026 (1028)
Q Consensus 984 ~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~GF~ 1026 (1028)
++++||+||||||.|+||.|+|+|+|++||++||++++|||
T Consensus 312 --~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~~~gF~ 352 (352)
T cd00078 312 --PDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352 (352)
T ss_pred --CCCCCCcchhhhccccCCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 68999999999999999999999999999999999999997
No 6
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=5.2e-78 Score=681.79 Aligned_cols=330 Identities=45% Similarity=0.783 Sum_probs=310.4
Q ss_pred cccccCc-EEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCCCccccCcc-eEeeCCCCCCchhhHhHHHHHHhh
Q 001688 688 EEDLRGA-IRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH-LLYPNPGSGMIHEQHLQFFHFLGI 765 (1028)
Q Consensus 688 ~~~lk~~-l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~~~f~p~~~lF~~~~~~-~l~pnp~~~~~~~~~l~~f~fiG~ 765 (1028)
..++|++ ++|+|+| |+|+|+|||+||||+++++++++|++|||..++++ .+||||.+....++++++|+++|+
T Consensus 4 ~~~~~~~~l~V~F~g-----E~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~~~~~~p~~~~~~~~~l~~f~~~G~ 78 (336)
T smart00119 4 DEDLKKSVLEIEFEG-----EEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRAFFANPEHLAYFRFIGR 78 (336)
T ss_pred hHHhCCCeEEEEECC-----CCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCCeEEeCCCccccchHHHHHHHHHHH
Confidence 4678888 9999998 89999999999999999999999999999988765 799999886555778999999999
Q ss_pred hHHHHHhcCCccccCCcHHHHHHhhcCCCCCCcccCCChhhHHHHHHHhhcccccccceeeEEEE-eccCCcceeEeccC
Q 001688 766 LLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVIL-NNEYGEQTEEELLP 844 (1028)
Q Consensus 766 llG~al~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~L~~~~~dv~~l~L~Ft~~-~~~~g~~~~~eL~p 844 (1028)
++|+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|+...+..++++++|++. ...+|...++||+|
T Consensus 79 lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~~~~~l~F~~~~~~~~g~~~~~eL~~ 158 (336)
T smart00119 79 VLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTSEELDLTFSIVLTSEFGQVKVVELKP 158 (336)
T ss_pred HHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCcccccceEEEEeeecCCCcceEecCC
Confidence 99999999999999999999999999999999999999999999999953222345689999854 34578889999999
Q ss_pred CCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhchhhhhcCCCHHHHHHhhcCCCCCCCHHHHhhcceeCC
Q 001688 845 GGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVG 924 (1028)
Q Consensus 845 ~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~g 924 (1028)
||++++||.+||++||+++++|+++.+++.|++||++||++|+|.+++++|+|+||+.++||.++ ||+++|++||+|.+
T Consensus 159 ~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~~~ 237 (336)
T smart00119 159 GGSNIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEYKG 237 (336)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred CCCCCcHHHHHHHHHHhhCCHHHHHhhceeecCcCCCCCCCcccCCCceEEecCCCCCCCcCCCCCceeecccCeeccCC
Q 001688 925 GYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPP 1004 (1028)
Q Consensus 925 gy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~Gf~~L~p~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~ 1004 (1028)
||++++++|+|||+++++||+|+|++||+|+||++|+|++||+.++|+|+|++.+. ++++||+||||||.|+||.
T Consensus 238 g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~~~~i~~~~~-----~~~~LP~a~TCfn~L~LP~ 312 (336)
T smart00119 238 GYSENSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGS-----DDDRLPTAHTCFNRLKLPP 312 (336)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcCCceEEEECCC-----CCCCCCccccccCcCcCCC
Confidence 99999999999999999999999999999999999999999999999999998864 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCccCC
Q 001688 1005 YRSKEQMSTKLLYAINAEAGFDLS 1028 (1028)
Q Consensus 1005 Y~s~e~l~ekL~~AI~~~~GF~Ls 1028 (1028)
|+|+|+|++||++||++++||+||
T Consensus 313 Yss~e~l~~kL~~AI~~~~gF~l~ 336 (336)
T smart00119 313 YSSKEILREKLLLAINEGKGFGLS 336 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999997
No 7
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=2.4e-78 Score=690.87 Aligned_cols=381 Identities=38% Similarity=0.676 Sum_probs=359.3
Q ss_pred hhhhhcCCccccccchHHHHHHHHHHHHHhcCCCCCCccceEEEeCCchHHHHHHHhcCCCcccccCcEEEEEEeccCcc
Q 001688 627 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE 706 (1028)
Q Consensus 627 ~~il~~~Pf~~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~ 706 (1028)
..++.++|.++.|+.|.++|++.+.+..++ +. .-.|.|+|+.+++|+++++...+++++|.++.|+|.|
T Consensus 331 f~ll~~~~~ll~F~~Kr~yf~r~L~~~~~~---~~---~~~v~v~R~~v~~~S~~~~~~~s~~e~~~rl~I~f~g----- 399 (720)
T KOG0939|consen 331 FSLLLKNPMLLDFDNKRKYFKRELRKEHAS---SE---KLAVLVRRALVLEDSFRALLYKSPEELKTRLEVTFQG----- 399 (720)
T ss_pred hhhheecCcceecccHHHHHHHHHHHhhcc---CC---cceEEEeHHHHHHHHHHHHHhCCHHHHhcceEEEEec-----
Confidence 578889999999999999999988776554 11 1179999999999999999999999999999999998
Q ss_pred cccccCCCchHHHHHHHHHHhhcccCCCccccCcc--eEeeCCCCCCchhhHhHHHHHHhhhHHHHHhcCCccccCCcHH
Q 001688 707 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784 (1028)
Q Consensus 707 E~GiD~GG~~rEf~~~l~~~~f~p~~~lF~~~~~~--~l~pnp~~~~~~~~~l~~f~fiG~llG~al~~~~~l~l~f~~~ 784 (1028)
|+|+|+||+.||||..+++++|||+++||....+. .+.|||+++ .+++||.+|+|+||++|||+++|.+++..|.+.
T Consensus 400 EEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~-~np~hLs~fkf~GriigKal~d~ql~~c~ftrs 478 (720)
T KOG0939|consen 400 EEGSDAGGVTREWLQLLSREIFNPRYALFTTVGSDQTTFHPNPNSY-VNPEHLSYFKFVGRIIGKALFDGQLLECYFTRS 478 (720)
T ss_pred ccccccchHHHHHHHHHHHHHcCCCcceEEEcCCCceEEeeCCccc-CChhhhhHHHhhHHHHHHHHhcchhhhheeeHH
Confidence 89999999999999999999999999999987765 577999987 678999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCcccCCChhhHHHHHHHhhccccccc-ceeeEEEEeccCCcceeEeccCCCcccccchhhHHHHHHHH
Q 001688 785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLV 863 (1028)
Q Consensus 785 f~k~Llg~~~~l~DL~~~Dp~l~~~L~~L~~~~~dv~~-l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~ 863 (1028)
|||+++|.+++..|+++.||+.|+++.||.+ +|+.+ ++++|+...+++|..+++||+|||++|.||++||.+||+++
T Consensus 479 fyk~ilG~~v~~~d~es~DP~y~k~l~~il~--ndis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~yv~lv 556 (720)
T KOG0939|consen 479 FYKHILGLPVTYHDMESADPEYYKSLVWILK--NDISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEYVQLV 556 (720)
T ss_pred HHhhccCCceeeeehhhcChHHhhceeehhc--CCcccceeEEEEEeeccccccceeecccCCCceeeccccHHHHHHHH
Confidence 9999999999999999999999999999975 55543 99999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHhchhhhhcCCCHHHHHHhhcCCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHhhC
Q 001688 864 SNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 943 (1028)
Q Consensus 864 ~~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~ 943 (1028)
++|||..+|++|++||.+||+++||...+++|+++||+.||||.++ ||++||+.||+|. ||...+++|+|||++|++|
T Consensus 557 ~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpe-idvdd~k~nt~y~-~~~~~~~~i~wFWrav~sf 634 (720)
T KOG0939|consen 557 TQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPE-IDVDDLKANTEYL-GYTKASSVIQWFWRAVRSF 634 (720)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCc-ccHHHHHhhhhhh-cccccchHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998 9999999999997 7888899999999999999
Q ss_pred CHHHHHhhceeecCcCCCCCCCcccCCC-----ceEEecCCCCCCCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHH
Q 001688 944 SLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYA 1018 (1028)
Q Consensus 944 s~eer~~fL~FvTG~sr~P~~Gf~~L~p-----~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~A 1018 (1028)
+.|+|.+||+||||+|++|++||+.|.+ +|.|+.... ..++||+||||||.|+||.|.|||.++++|+.|
T Consensus 635 ~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~-----s~d~LP~ahTCfnqL~LP~Y~Sye~l~~~LllA 709 (720)
T KOG0939|consen 635 DQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPG-----STDRLPTAHTCFNQLFLPHYASYEQLRESLLLA 709 (720)
T ss_pred cHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCC-----CCCCCcchhhhhhhhcCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999999987 899998875 789999999999999999999999999999999
Q ss_pred HHcCC-CccCC
Q 001688 1019 INAEA-GFDLS 1028 (1028)
Q Consensus 1019 I~~~~-GF~Ls 1028 (1028)
|++|. ||++.
T Consensus 710 i~E~segfg~a 720 (720)
T KOG0939|consen 710 INEGSEGFGMA 720 (720)
T ss_pred HHhhhhccCcC
Confidence 99996 99873
No 8
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-71 Score=609.63 Aligned_cols=393 Identities=31% Similarity=0.522 Sum_probs=348.7
Q ss_pred ccchhhhhhcCCccccccchHHHHHHH-------HHHHHHhcCCC------------CCCccceEEEeCCchHHHHHHHh
Q 001688 623 GTRANEILKQAPFLVPFTSRAKIFQSQ-------LASVRQRHGSH------------GVFTRSRFRIRRDHILEDAYSQM 683 (1028)
Q Consensus 623 ~~~~~~il~~~Pf~~pf~~Rv~~f~~~-------~~~~~~~~~~~------------~~~~~~~i~VrR~~i~eda~~~l 683 (1028)
..|...+...+||++||++|..+|+.. ++..++..++. ....|.+++|.|++|++.|...|
T Consensus 164 p~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm 243 (621)
T KOG0170|consen 164 PDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSKDGSNDEALQQLGRLTRKKLRISRKTILASALKVM 243 (621)
T ss_pred ChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCCCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHH
Confidence 367788999999999999999999853 33333332211 12234489999999999999999
Q ss_pred cCCCcccccCcEEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCCCcccc----------Cc-------ceEeeC
Q 001688 684 STMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKET----------SD-------HLLYPN 746 (1028)
Q Consensus 684 ~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~~~f~p~~~lF~~~----------~~-------~~l~pn 746 (1028)
...+ .-+..++|+|.+|+|. |-||+-||++.+++++..++.|||+.. ++ .++||.
T Consensus 244 ~~yg--ss~~vLEIEY~~EvGT------GLGPTLEFYtlVSk~fq~~sLgmWR~~s~s~~~~k~~~~t~~v~~~sgLFp~ 315 (621)
T KOG0170|consen 244 EKYG--SSKAVLEIEYEEEVGT------GLGPTLEFYTLVSKEFQRASLGMWRCNSVSYRSGKPQENTKDVYITSGLFPR 315 (621)
T ss_pred HHhc--CCcceEEEEecccccc------CCCcceeeHHHHHHHHhhccccccccCceeeccCCCCCCcchhhhccccCCC
Confidence 8865 4578999999996664 679999999999999999999999974 11 358998
Q ss_pred CCCCCch----hhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCCCCCcccCCChhhHHHHHHHhh------c
Q 001688 747 PGSGMIH----EQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKH------Y 816 (1028)
Q Consensus 747 p~~~~~~----~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~L~~------~ 816 (1028)
|.....+ +...++|.++|+++||||++|.++|+||+++|||.++|++.+..|+..+||++.++|..|.. .
T Consensus 316 P~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~ 395 (621)
T KOG0170|consen 316 PWPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKK 395 (621)
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhh
Confidence 8764322 23578999999999999999999999999999999999999999999999999999987742 1
Q ss_pred ----cc--------------ccccceeeEEEEeccCCcceeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHH
Q 001688 817 ----EA--------------DISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSH 878 (1028)
Q Consensus 817 ----~~--------------dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~a 878 (1028)
.| .+|||+|+||++.. ..+||+|||.+++||..|.+|||+.|+++.++++|.+|++|
T Consensus 396 ~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~-----p~ieL~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleA 470 (621)
T KOG0170|consen 396 LEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGF-----PDIELIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEA 470 (621)
T ss_pred hhhhcccccccccceeecCcchhhceeeEecCCC-----CCeeeccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 11 24889999999753 57899999999999999999999999999999999999999
Q ss_pred HHHHHhHhchhhhhcCCCHHHHHHhhcCCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHhhCCHHHHHhhceeecCc
Q 001688 879 FLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGC 958 (1028)
Q Consensus 879 f~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~ 958 (1028)
|+.||.+|+|.+-|++|+|+||..++||..+.|+.+.|.+|.+.+|||+.++|+|+.+.+++..|+.||||.||+||||+
T Consensus 471 Fr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGS 550 (621)
T KOG0170|consen 471 FRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGS 550 (621)
T ss_pred HHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCceEEecCCCCCCCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHHcCCC-ccCC
Q 001688 959 SRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAG-FDLS 1028 (1028)
Q Consensus 959 sr~P~~Gf~~L~p~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~G-F~Ls 1028 (1028)
+|+|+|||+.|+||++|.+.....++.+++.||+.+||.|+||||+|+|+|+|++||.|||++|+| |+||
T Consensus 551 prLPiGGfasLNPklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 551 PRLPIGGFASLNPKLTIVRKHAEDSETPDDYLPSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred CCCCCCcccccCCCeEEEeccCCCCCCcccccchHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence 999999999999999999877555666899999999999999999999999999999999999997 9998
No 9
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=3.5e-64 Score=568.27 Aligned_cols=304 Identities=44% Similarity=0.730 Sum_probs=257.6
Q ss_pred HHHHHHhhcccCCCccccCc-ceEeeCCCCC------CchhhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhh-cC
Q 001688 721 ENITRAAFDVQYGLFKETSD-HLLYPNPGSG------MIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLK-QK 792 (1028)
Q Consensus 721 ~~l~~~~f~p~~~lF~~~~~-~~l~pnp~~~------~~~~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Ll-g~ 792 (1028)
+++++++|+|++|||..+++ +.++|||... ...+.++++|+++|+++|+||++|.+++++|+++|||+|+ |.
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g~ 80 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNGLFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSGE 80 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTCEEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T-
T ss_pred CHHHHHhcCccCCCceEcCCCCEEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcCC
Confidence 57999999999999976654 5577887621 1234677899999999999999999999999999999999 99
Q ss_pred CCCCCcccCCChhhHHHHHHHhhccc---ccccceeeEEEEecc-CCcceeEeccCCCcccccchhhHHHHHHHHHHHHH
Q 001688 793 YNYLNDLPSLDPELYRHLIFLKHYEA---DISELELYFVILNNE-YGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRL 868 (1028)
Q Consensus 793 ~~~l~DL~~~Dp~l~~~L~~L~~~~~---dv~~l~L~Ft~~~~~-~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l 868 (1028)
+++++|++++||+++++|++|++++. ++++++++|++..+. .|...++||+|||++++||.+||.+||+++++|++
T Consensus 81 ~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l 160 (317)
T PF00632_consen 81 PLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRL 160 (317)
T ss_dssp ---HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHH
T ss_pred CCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhc
Confidence 99999999999999999999997743 367899999987543 56667899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhHhchhhhhcCCCHHHHHHhhcCCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHhhCCHHHH
Q 001688 869 NFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQ 948 (1028)
Q Consensus 869 ~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer 948 (1028)
+++++.|++||++||.+|+|..++++|+++||+.++||.++.||+++|+++++|.+||++++++|+|||+++++||+++|
T Consensus 161 ~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~ 240 (317)
T PF00632_consen 161 NESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEER 240 (317)
T ss_dssp TTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHH
T ss_pred ccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHh
Confidence 99999999999999999999999999999999999999986699999999999999999999999999999999999999
Q ss_pred HhhceeecCcCCCCCCCcccCCCceEEecCCCCCCCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHHcC-CCccC
Q 001688 949 KKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAE-AGFDL 1027 (1028)
Q Consensus 949 ~~fL~FvTG~sr~P~~Gf~~L~p~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~-~GF~L 1027 (1028)
++||+|+||++|+|++||+.++|+|+|+..+.. ++++||+||||||.|+||.|+|+|+||+||++||+++ +||+|
T Consensus 241 ~~fL~F~TG~~~lP~~G~~~l~~~i~i~~~~~~----~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~~~~gF~~ 316 (317)
T PF00632_consen 241 RKFLRFVTGSSRLPPGGFSNLNPKITIQFSDDS----PDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIENGQEGFGL 316 (317)
T ss_dssp HHHHHHHHSSSSB-TTGGGGGE-EEEEEEESC-----STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHHT------
T ss_pred heeEEEecCCCCCCccccccccceeEEeecCCC----ccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHcCCCCcCc
Confidence 999999999999999999999999999988731 3789999999999999999999999999999999999 89999
Q ss_pred C
Q 001688 1028 S 1028 (1028)
Q Consensus 1028 s 1028 (1028)
|
T Consensus 317 s 317 (317)
T PF00632_consen 317 S 317 (317)
T ss_dssp -
T ss_pred C
Confidence 8
No 10
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=452.45 Aligned_cols=335 Identities=36% Similarity=0.649 Sum_probs=319.4
Q ss_pred eEEEeCCchHHHHHHHhcCCCcccccCcEEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCCCccccCcc-eEee
Q 001688 667 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH-LLYP 745 (1028)
Q Consensus 667 ~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l~~~~f~p~~~lF~~~~~~-~l~p 745 (1028)
+++|+|++++||+|+++...++.++|+.+.+.|.+ |+|.|.||+.|||+..+++++|+|.+++|..+.+. .++.
T Consensus 18 ~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~-----ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~ 92 (358)
T KOG0940|consen 18 HHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKG-----EEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWL 92 (358)
T ss_pred EEEechhhhHHHHHHHHhCCCchhhhhcceeeccc-----ccccccCCCCcceeeeeccccCCcceeeeeeccccccccc
Confidence 89999999999999999999999999999999998 89999999999999999999999999999999885 8899
Q ss_pred CCCCCCchhhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCCCCCcccCCChhhHHHHHHHhhccccccccee
Q 001688 746 NPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELEL 825 (1028)
Q Consensus 746 np~~~~~~~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~L~~~~~dv~~l~L 825 (1028)
+|.++ .+++|+.+|.|+|+.+|+|++++..++.- -.+|||.|++++.+++|.+++|++.|+++.+++++ |+.. ++
T Consensus 93 ~P~sg-~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en--~~~~-~~ 167 (358)
T KOG0940|consen 93 NPRSG-VNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIREN--DPTN-DL 167 (358)
T ss_pred CCccC-CCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCccccccccccccC--Cccc-ch
Confidence 99998 88999999999999999999999998887 88999999999999999999999999999999864 4444 99
Q ss_pred eEEEEeccCCcceeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhchhhhhcCCCHHHHHHhhc
Q 001688 826 YFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLIS 905 (1028)
Q Consensus 826 ~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~ 905 (1028)
+|.++...+|+....+|+|||.++.||.+|+++||.++.+ ++...+..|..+|.+||..++|..++++|.+.|++.++|
T Consensus 168 ~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~ 246 (358)
T KOG0940|consen 168 TFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELELALS 246 (358)
T ss_pred hhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHHHhc
Confidence 9999999999999999999999999999999999999999 888999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHhhCCHHHHHhhceeecCcCCCCCCCcccCCC-----ceEEecCCC
Q 001688 906 GSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAG 980 (1028)
Q Consensus 906 G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~Gf~~L~p-----~f~I~~~~~ 980 (1028)
|..+ +|++||++++.|. +|+.+|++|.|||+.+..+++++|.+.++|+||++++|..||+.+.. .|+|...+
T Consensus 247 ~~~~-~~~~d~~~~t~~~-~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~~~- 323 (358)
T KOG0940|consen 247 GDPE-IDVNDWKQNTEYR-GYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEKWG- 323 (358)
T ss_pred CCcc-cchhHHhhhcccc-cccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecCcc-
Confidence 9997 9999999999998 89999999999999999999999999999999999999999998874 79998855
Q ss_pred CCCCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHH
Q 001688 981 SASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN 1020 (1028)
Q Consensus 981 ~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~ 1020 (1028)
+.+++|.+|||||.|++|.|.+++.|++|+..||+
T Consensus 324 -----~~~~~p~~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 324 -----KSTQLPRSHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred -----cccccchhcccccccccccccchhHHHHHHHHhcC
Confidence 88999999999999999999999999999999984
No 11
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-36 Score=347.78 Aligned_cols=262 Identities=25% Similarity=0.422 Sum_probs=220.5
Q ss_pred hhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCCCCCcccCCChhhHHHHHHHhhc------ccccccceeeE
Q 001688 754 EQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHY------EADISELELYF 827 (1028)
Q Consensus 754 ~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~L~~~------~~dv~~l~L~F 827 (1028)
+..+..|+-+|||+|.|+..|-+.++.|++.+||.|+|.++.+.|+.-+||.+|++|..|-.. +.|...+++.|
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsSd~DadFS~md~aa 2818 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSSDADADFSAMDLAA 2818 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCcccccchhhHHHHhh
Confidence 346788999999999999999999999999999999999999999999999999999988532 12223344444
Q ss_pred EEEe-ccCCcceeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhchhhhhcCCCHHHHHHhhcC
Q 001688 828 VILN-NEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISG 906 (1028)
Q Consensus 828 t~~~-~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G 906 (1028)
..+- .+- ...+|+|+|||.+|+||.+|+.|||..|++++|...-...++|+|+|+-.|||.+.|.-++++++..+|||
T Consensus 2819 ~gdlckee-~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG 2897 (3015)
T KOG0943|consen 2819 AGDLCKEE-GAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICG 2897 (3015)
T ss_pred ccchhhhc-CceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeec
Confidence 4321 111 34579999999999999999999999999999987667789999999999999999999999999999999
Q ss_pred CCCCCCHHHHhhcceeCCCCCCCc----HHHHHHHHHHhhCCHHHHHhhceeecCcCCCCCCC--cccCCCceEEecCCC
Q 001688 907 SLDSLDFDDLRQNTNYVGGYHSEH----YVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLG--FKYLEPLFCIQRAAG 980 (1028)
Q Consensus 907 ~~~~id~~dl~~~t~y~ggy~~~~----~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~G--f~~L~p~f~I~~~~~ 980 (1028)
..+ +++..|.++|-|-..--++. +.-+|||+|++.|+..||..+..|+||++.+|..| |... +.+.|+..
T Consensus 2898 ~ee-VniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~e~~p~~-aSimiRP~-- 2973 (3015)
T KOG0943|consen 2898 CEE-VNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAEEGFPPM-ASIMIRPP-- 2973 (3015)
T ss_pred ccc-eehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccccCCCCC-CceeecCc--
Confidence 997 99999999997652222222 25689999999999999999999999999999865 5322 34555433
Q ss_pred CCCCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHHcCC-Cc
Q 001688 981 SASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA-GF 1025 (1028)
Q Consensus 981 ~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~-GF 1025 (1028)
++..||||.||...|..|.|+||.+||.||+.||..-. ||
T Consensus 2974 -----dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKaKNFGF 3014 (3015)
T KOG0943|consen 2974 -----DDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKAKNFGF 3014 (3015)
T ss_pred -----ccccCCcccchhhheeeechhhHHHHHHHHHHhhhcccccc
Confidence 67899999999999999999999999999999998643 55
No 12
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.53 E-value=8.7e-05 Score=49.10 Aligned_cols=21 Identities=38% Similarity=0.351 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 001688 46 NHAAIKIQKCFRGKKAMEIEH 66 (1028)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~ 66 (1028)
.+||++||++||||++|++.+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 369999999999999999864
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.91 E-value=0.00068 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 001688 45 QNHAAIKIQKCFRGKKAMEIEH 66 (1028)
Q Consensus 45 r~~aAi~IQ~~~Rg~~~r~~~~ 66 (1028)
.+.+|++||++||||++|++.+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999874
No 14
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=77.92 E-value=2.3 Score=48.97 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 001688 46 NHAAIKIQKCFRGKKAMEIEHSK 68 (1028)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~~~ 68 (1028)
-+||+.||+|.|||.||..+|+.
T Consensus 17 ikaAilIQkWYRr~~ARle~rrr 39 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARRR 39 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999888764
No 15
>PTZ00014 myosin-A; Provisional
Probab=71.87 E-value=6.3 Score=50.60 Aligned_cols=32 Identities=9% Similarity=-0.027 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001688 38 RRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (1028)
Q Consensus 38 ~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (1028)
+|+...+-...|..||++||||++|++.++..
T Consensus 769 ~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~ 800 (821)
T PTZ00014 769 QREKLAAWEPLVSVLEALILKIKKKRKVRKNI 800 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444567889999999999999877763
No 16
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=63.52 E-value=6.2 Score=47.07 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001688 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAM 62 (1028)
Q Consensus 28 lL~q~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r 62 (1028)
|=-+++|+-.+.+-.|||+.||-.||++||-|.+-
T Consensus 322 fALKVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa~ 356 (654)
T KOG1419|consen 322 FALKVQEQHRQKHFNRRRNPAASLIQCAWRYYAAE 356 (654)
T ss_pred hhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcc
Confidence 44578888888899999999999999999988763
No 17
>PTZ00014 myosin-A; Provisional
Probab=61.47 E-value=11 Score=48.39 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001688 39 RLYLRRQNHAAIKIQKCFRGKKAMEIE 65 (1028)
Q Consensus 39 R~~~rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (1028)
|..-+++..|++.||++||||+++++.
T Consensus 793 r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 793 KRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444445577999999999999999764
No 18
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=55.70 E-value=19 Score=44.38 Aligned_cols=27 Identities=22% Similarity=0.134 Sum_probs=20.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001688 44 RQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (1028)
Q Consensus 44 rr~~aAi~IQ~~~Rg~~~r~~~~~~~r 70 (1028)
+...-|..||+.||||++|.+.++-.+
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka 720 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKA 720 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999988776443
No 19
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=49.23 E-value=17 Score=27.38 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 001688 47 HAAIKIQKCFRGKKAMEIEHSK 68 (1028)
Q Consensus 47 ~aAi~IQ~~~Rg~~~r~~~~~~ 68 (1028)
-||..||-+||.|..|+.....
T Consensus 10 YAt~lI~dyfr~~K~rk~~~~~ 31 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKEQEQQ 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999875443
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=43.28 E-value=18 Score=44.54 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001688 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (1028)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~~~~~r 70 (1028)
.=|.++.+++|++.|||++|++.+..+.
T Consensus 810 ~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 810 IYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 4467889999999999999999887653
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=36.74 E-value=53 Score=42.14 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001688 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAME 63 (1028)
Q Consensus 28 lL~q~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~ 63 (1028)
++++.=.-+.-|..--+..++++.||+++||+++|+
T Consensus 678 ~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 678 LIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 455555555555555555566666666666666665
No 22
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=31.28 E-value=64 Score=41.46 Aligned_cols=30 Identities=23% Similarity=0.118 Sum_probs=21.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001688 45 QNHAAIKIQKCFRGKKAMEIEHSKVREQFF 74 (1028)
Q Consensus 45 r~~aAi~IQ~~~Rg~~~r~~~~~~~r~efd 74 (1028)
+..|||.||+.||++.+|++.+..+...+-
T Consensus 717 ~~~aai~~q~~~r~~~~r~~y~~~~~~~~~ 746 (862)
T KOG0160|consen 717 REAAAIGIQKECRSYLNRRRYRALIPASIT 746 (862)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777766666554
No 23
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=21.25 E-value=2.5e+02 Score=35.22 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC
Q 001688 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGP 91 (1028)
Q Consensus 28 lL~q~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~r~efd~~~~~~~~~~~~~~~~~ 91 (1028)
|||++=.-=..|..-||-.+|+++|+ |||.|..+..++... ..|-..-.-.+.+.+-.|..|
T Consensus 701 llQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks~v~el~-~~~rg~k~~r~ygk~~~WP~p 762 (1001)
T KOG0164|consen 701 LLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKSYVQELQ-RRFRGAKQMRDYGKSIRWPAP 762 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhhhhccccCCCCCCCCC
Confidence 34444333345777777778888888 999888777665444 344432222222333345533
Done!