Query 001688
Match_columns 1028
No_of_seqs 347 out of 1510
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:27:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001688.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_985-989//hhsearch_pdb/001688hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 1.0 1 1 748.3 30.5 383 626-1028 13-405 (405)
2 1zvd_A SMAD ubiquitination reg 1.0 1 1 738.7 31.1 370 638-1028 3-380 (380)
3 2oni_A E3 ubiquitin-protein li 1.0 1 1 735.8 24.6 375 627-1021 10-392 (392)
4 3olm_A E3 ubiquitin-protein li 1.0 1 1 727.9 29.9 370 635-1027 51-428 (429)
5 1nd7_A WW domain-containing pr 1.0 1 1 722.5 33.1 365 638-1023 3-374 (374)
6 1c4z_A E6AP, ubiquitin-protein 1.0 1 1 719.7 24.6 345 667-1028 7-358 (358)
7 3pt3_A E3 ubiquitin-protein li 1.0 1 1 261.2 7.8 108 911-1027 4-117 (118)
8 1n2d_C IQ2 and IQ3 motifs from 1.0 1 1 37.1 4.5 23 43-65 25-47 (48)
9 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 35.4 6.4 72 712-788 636-711 (1080)
10 3gn4_A Myosin-VI; unconvention 1.0 1 1 35.1 4.1 34 39-72 38-71 (148)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=1.00 E-value=1 Score=748.30 Aligned_cols=383 Identities=36% Similarity=0.639 Sum_probs=350.3
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 34663209932361011899999999999841999987551189808745899999864799000157279999833675
Q 001688 626 ANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 705 (1028)
Q Consensus 626 ~~~il~~~Pf~~pf~~rv~~f~~~i~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~g~ 705 (1028)
.+..|.+-|+ ++|+.|+++|++.+.+.+.... -...+++|||++|++|+++++...++.++|++++|+|+|
T Consensus 13 ~~~~~~~~~~-~~f~~k~~~F~~~l~~~~~~~~----~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g---- 83 (405)
T 3h1d_A 13 GLEVLFQGPH-MDFDVKRKYFRQELERLDEGLR----KEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG---- 83 (405)
T ss_dssp CCGGGGCSTT-SCHHHHHHHHHHHHHHHTTTCC----CCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT----
T ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHHHHHCCCC----CCCEEEEEECCHHHHHHHHHHHCCCHHHHHCCEEEEECC----
T ss_conf 5678614987-6889999999999986224788----986699994860799999999715988761666999789----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 334435788439999999999633358974335740--174299998861457679998745577787639702667719
Q 001688 706 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT 783 (1028)
Q Consensus 706 ~E~GiD~GG~~rEf~~~l~~~~f~p~~glF~~~~~~--~l~pnp~~~~~~~~~l~~f~fiG~llGkal~~g~~i~l~f~~ 783 (1028)
|+|+|+||++||||+++++++|+|++|||..+++. .++|||.+. ..++++++|+|+|+++|+|||+|.++|++|++
T Consensus 84 -E~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~ 161 (405)
T 3h1d_A 84 -EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTR 161 (405)
T ss_dssp -CCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC------CHHHHHHHHHHHHHHHHHHTCCCCCEECH
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf -8774787369999999999983986444022268832673077322-57557789998869999999389825877629
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC--CEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 899974168999896667896657888988601464333--201389980557850147435999542135111999999
Q 001688 784 FFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE--LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIH 861 (1028)
Q Consensus 784 ~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~l~~~~~dv~~--l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~ 861 (1028)
+|||+|+|++++++||+++||++|++|++|++++ +++ ++++|++..+.+|...++||+|||++++||++||.+||+
T Consensus 162 ~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~--~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~ 239 (405)
T 3h1d_A 162 SFYKHILGKSVRYTDMESEDYHFYQGLVYLLEND--VSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVH 239 (405)
T ss_dssp HHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSC--GGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC--HHHHCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 9999826998978989875499999986665098--55643414899985237862368605789777426676899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999983879999999999885833013320799999988214888877978873404407988898689999999995
Q 001688 862 LVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLK 941 (1028)
Q Consensus 862 ~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~ 941 (1028)
++++|+++++++.|++||++||++|+|.+|+++|+|+||+.++||.++ ||+++|++||.|. ||+++|++|+|||+|++
T Consensus 240 l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~ 317 (405)
T 3h1d_A 240 LVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEYH-KYQSNSIQIQWFWRALR 317 (405)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCCC-CCCCCCCHHHHHHHHHH
T ss_conf 999999987799999999999998702888757999999998488777-9999998308034-88988704744998997
Q ss_pred HCCHHHHHHHCEEECCCCCCCCCCCCCCCC-----CEEEECCCCCCCCCCCCCCCEEECCCCEECCCCCCCHHHHHHHHH
Q ss_conf 099999976220014767778898556788-----168851789989967999963205448121479999999999999
Q 001688 942 SFSLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLL 1016 (1028)
Q Consensus 942 ~~s~eer~~fL~FvTG~sr~P~~Gf~~l~p-----~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~ 1016 (1028)
+|++|+|++||+|||||+|+|++||+.|+| +|+|++.+. ++++||+||||||+|+||+|+|+++|++||+
T Consensus 318 ~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~-----~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~ 392 (405)
T 3h1d_A 318 SFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR-----STDRLPSAHTCFNQLDLPAYESFEKLRHMLL 392 (405)
T ss_dssp HSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECS-----CTTSCCEEEGGGTEEEEECCSSHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-----CCCCCCCCEECCCEEECCCCCCHHHHHHHHH
T ss_conf 49999999999997299988987510036667873079951799-----8877944000218757989999999999999
Q ss_pred HHHHCC-CCCCCC
Q ss_conf 999719-986689
Q 001688 1017 YAINAE-AGFDLS 1028 (1028)
Q Consensus 1017 ~AI~~~-~GF~Ls 1028 (1028)
+||+++ +||||.
T Consensus 393 ~AI~e~~~GFgla 405 (405)
T 3h1d_A 393 LAIQEASEGFGLA 405 (405)
T ss_dssp HHHHC--------
T ss_pred HHHHHCCCCCCCC
T ss_conf 9998077786879
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=738.71 Aligned_cols=370 Identities=32% Similarity=0.606 Sum_probs=344.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH
Q ss_conf 61011899999999999841999987551189808745899999864799000157279999833675334435788439
Q 001688 638 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 717 (1028)
Q Consensus 638 pf~~rv~~f~~~i~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~g~~E~GiD~GG~~r 717 (1028)
+|+.|+++|+..+.+.+. ... ..+++|||++|++|+++++...++.++|++++|+|.| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~l~~~~~----~~~--~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~r 71 (380)
T 1zvd_A 3 DLVQKLKILRQELSQQQP----QAG--HCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRG-----EEGLDYGGVAR 71 (380)
T ss_dssp SHHHHHHHHHHHHHHHSC----SSC--EEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----CCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC----CCC--CEEEEECCCCHHHHHHHHHHCCCHHHHCCCEEEEECC-----CCCCCCCCCHH
T ss_conf 759999999999874278----898--6699976677999999999745979846745999778-----76758885189
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC--EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 999999999633358974335740--174299998861457679998745577787639702667719899974168999
Q 001688 718 DFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 795 (1028)
Q Consensus 718 Ef~~~l~~~~f~p~~glF~~~~~~--~l~pnp~~~~~~~~~l~~f~fiG~llGkal~~g~~i~l~f~~~f~k~Llg~~~~ 795 (1028)
|||+++++++|+|++|||..++++ .++|||.+. ..++++++|+|+|+++|+|||+|.++|++|+++|||+|+|.+++
T Consensus 72 Eff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~ 150 (380)
T 1zvd_A 72 EWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSA-VNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSIT 150 (380)
T ss_dssp HHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCCCCEECCCCCCEEECCCCHHH-CCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCC
T ss_conf 99999999980876787003688871343583221-58678999998588887998179524775879999999579887
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCC-CEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 896667896657888988601464333-2013899805578501474359995421351119999999999998387999
Q 001688 796 LNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ 874 (1028)
Q Consensus 796 l~DL~~~Dp~l~~~L~~l~~~~~dv~~-l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~ 874 (1028)
++||+++||++|++|+++++ +|+++ ++++|++..+.+|...++||+|||++++||.+||.+||+++++|+++++++.
T Consensus 151 l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~ 228 (380)
T 1zvd_A 151 LDDMELVDPDLHNSLVWILE--NDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEA 228 (380)
T ss_dssp STTHHHHCHHHHHHHHHHHH--SCCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHCHHHHHHHHHHHH--CCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 78877768999999999870--8810002341688630379576785279997771440239999999999999876999
Q ss_pred HHHHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHCEE
Q ss_conf 99999998858330133207999999882148888779788734044079888986899999999950999999762200
Q 001688 875 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKF 954 (1028)
Q Consensus 875 q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~F 954 (1028)
|++||++||++|+|.+|+++|+|+||+.++||.++ ||++||++||.|. ||+++|++|+|||+|+++|++|+|++||+|
T Consensus 229 q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~F 306 (380)
T 1zvd_A 229 QFLALQKGFNEVIPQHLLKTFDEKELELIICGLGK-IDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQF 306 (380)
T ss_dssp HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSS-CCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHCCEEC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999975988758999857999999986489987-7743565331753-889876136269999972899999999999
Q ss_pred ECCCCCCCCCCCCCCCC-----CEEEECCCCCCCCCCCCCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 14767778898556788-----168851789989967999963205448121479999999999999999719986689
Q 001688 955 VTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 1028 (1028)
Q Consensus 955 vTG~sr~P~~Gf~~l~p-----~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~GF~Ls 1028 (1028)
||||+|+|++||+.|+| +|+|++.+. ++++||+||||||+|+||+|+|+++|++||++||++++||||.
T Consensus 307 vTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~-----~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l~ 380 (380)
T 1zvd_A 307 VTGSSRVPLQGFKALQGAAGPRLFTIHQIDA-----CTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380 (380)
T ss_dssp HHSCSSBCTTCGGGCEETTEECCEEEEECCC-----CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred HHCCCCCCCCCHHHCCCCCCCCCEEEEECCC-----CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8389988986410025667887659995589-----9998977862758878989899999999999999807886869
No 3
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=1.00 E-value=1 Score=735.80 Aligned_cols=375 Identities=33% Similarity=0.590 Sum_probs=345.6
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCC-CCCCCCEEEEEEECCCC
Q ss_conf 46632099323610118999999999998419999875511898087458999998647990-00157279999833675
Q 001688 627 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSE-EDLRGAIRVTFVNELGV 705 (1028)
Q Consensus 627 ~~il~~~Pf~~pf~~rv~~f~~~i~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~-~~lk~~l~V~F~~e~g~ 705 (1028)
..++..+|+.++|+.|+.+|+..+.+.+ ....+.+++|||++|++|+++++...+. ..+|++++|+|+|
T Consensus 10 ~~~~~~~p~~~~f~~k~~~f~~~l~~~~------~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~g---- 79 (392)
T 2oni_A 10 GRENLYFQGSREFKQKYDYFRKKLKKPA------DIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFES---- 79 (392)
T ss_dssp ----CCSTTHHHHHHHHHHHHHHCCCCS------SSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC-----
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCC------CCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHCCCEEEEECC----
T ss_conf 2103579862118999999999971254------789977999817866999999997659277627417999878----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 33443578843999999999963335897433574--0174299998861457679998745577787639702667719
Q 001688 706 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT 783 (1028)
Q Consensus 706 ~E~GiD~GG~~rEf~~~l~~~~f~p~~glF~~~~~--~~l~pnp~~~~~~~~~l~~f~fiG~llGkal~~g~~i~l~f~~ 783 (1028)
|+|+|+||++||||+++++++|+|++|||..+++ ..++|||.+....++++++|+|+|+++|+|||+|.++|++|++
T Consensus 80 -E~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~ 158 (392)
T 2oni_A 80 -EKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIR 158 (392)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCH
T ss_pred -CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCEECCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHH
T ss_conf -7662688438999999999973966687400389882230288635466778888873355430442379503764259
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89997416899989666789665788898860146433320138998055785014743599954213511199999999
Q 001688 784 FFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLV 863 (1028)
Q Consensus 784 ~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~l~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~ 863 (1028)
+|||+|+|++++++||+++||++|++|+++++ +|+++++|+|+++.+.+|...++||+|||++++||.+||.+||+++
T Consensus 159 ~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~--~d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~ 236 (392)
T 2oni_A 159 PFYKMMLGKQITLNDMESVDSEYYNSLKWILE--NDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLV 236 (392)
T ss_dssp HHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHH--SCCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHC--CCHHHCEEEEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999967988788987748999999888864--9965730468994103894468963799856734444299999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99998387999999999988583301332079999998821488887797887340440798889868999999999509
Q 001688 864 SNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 943 (1028)
Q Consensus 864 ~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~ 943 (1028)
++|+++.+++.|++||++||++|+|.+|+++|+|+||+.++||.++ ||++||++||.|.|||+++|++|+|||+|+++|
T Consensus 237 ~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~ 315 (392)
T 2oni_A 237 IQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLM 315 (392)
T ss_dssp HHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHCCEEECCCCCCCCCHHEEHHHHHHHC
T ss_conf 9998866677999999999998566876516999999886068988-789998401587788799873220099999849
Q ss_pred CHHHHHHHCEEECCCCCCCCCCCCCCC-----CCEEEECCCCCCCCCCCCCCCEEECCCCEECCCCCCCHHHHHHHHHHH
Q ss_conf 999997622001476777889855678-----816885178998996799996320544812147999999999999999
Q 001688 944 SLENQKKFLKFVTGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYA 1018 (1028)
Q Consensus 944 s~eer~~fL~FvTG~sr~P~~Gf~~l~-----p~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~A 1018 (1028)
++|+|++||+|||||+|+|++||+.|. ++|+|++.+ ++++||+||||||+|+||+|+|+|+|++||++|
T Consensus 316 s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~------~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~A 389 (392)
T 2oni_A 316 DAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWG------SPEKLPRAHTCFNRLDLPPYETFEDLREKLLMA 389 (392)
T ss_dssp CHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCCEEEECS------CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEEECC------CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999998718998898555440456788755997589------888696887256786898989999999999999
Q ss_pred HHC
Q ss_conf 971
Q 001688 1019 INA 1021 (1028)
Q Consensus 1019 I~~ 1021 (1028)
|++
T Consensus 390 I~n 392 (392)
T 2oni_A 390 VEN 392 (392)
T ss_dssp HC-
T ss_pred HHC
T ss_conf 739
No 4
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=727.90 Aligned_cols=370 Identities=32% Similarity=0.597 Sum_probs=342.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 32361011899999999999841999987551189808745899999864799000157279999833675334435788
Q 001688 635 FLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714 (1028)
Q Consensus 635 f~~pf~~rv~~f~~~i~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~g~~E~GiD~GG 714 (1028)
+--+|+.|..+|+..+.. .......+++|||++|++|+++++...++.++|++++|+|+| |+|+|+||
T Consensus 51 y~~~~~~k~~~f~~~~~~-------~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG 118 (429)
T 3olm_A 51 YKRDFRRKVIYFRSQPAL-------RILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDG-----EEGLDYGG 118 (429)
T ss_dssp HHHHHHHHHHHHHSSGGG-------SCCSSCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEET-----TC------
T ss_pred CCCCCHHHHHHHHHHHHH-------CCCCCCEEEEEECCHHHHHHHHHHHHCCHHHCCCCEEEEECC-----CCCCCCCH
T ss_conf 044414779999987751-------679985589995421189999999846857518636999799-----87437874
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCC--EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf 439999999999633358974335740--174299998861457679998745577787639702667719899974168
Q 001688 715 IFKDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQK 792 (1028)
Q Consensus 715 ~~rEf~~~l~~~~f~p~~glF~~~~~~--~l~pnp~~~~~~~~~l~~f~fiG~llGkal~~g~~i~l~f~~~f~k~Llg~ 792 (1028)
++||||+++++++|+|++|||..+++. .++|||.+. ..++++++|+|+|+++|+|||+|.++|++|+++|||+|+|.
T Consensus 119 ~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 119 VSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSG-INPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp --CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf 49999999999974966799435079981575688655-88778999999999999999669866877689999761399
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCC-CEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999896667896657888988601464333-2013899805578501474359995421351119999999999998387
Q 001688 793 YNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQ 871 (1028)
Q Consensus 793 ~~~l~DL~~~Dp~l~~~L~~l~~~~~dv~~-l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~ 871 (1028)
+++++||+++||++|++|.++++ +|+++ ++++|++..+.+|...++||+|||++++||.+||.+||+++++|+++++
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~ 275 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLE--NSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDR 275 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTT--SCCTTTCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH--CCHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99799999876999999999984--8987762374388740479634685467876666570468999999999999876
Q ss_pred HHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 99999999998858330133207999999882148888779788734044079888986899999999950999999762
Q 001688 872 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKF 951 (1028)
Q Consensus 872 i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~f 951 (1028)
++.|++||++||++|+|.+++++|+|+||+.++||.++ ||++||++||.|. ||+++|++|+|||+|+++|++|+|++|
T Consensus 276 v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~-id~~dl~~~t~y~-Gy~~~~~~I~~FW~vv~~~s~eer~~f 353 (429)
T 3olm_A 276 VQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQRARL 353 (429)
T ss_dssp THHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999997563279999845999999999569988-8999999746236-999886299999999986899999999
Q ss_pred CEEECCCCCCCCCCCCCCCC-----CEEEECCCCCCCCCCCCCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 20014767778898556788-----1688517899899679999632054481214799999999999999997199866
Q 001688 952 LKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFD 1026 (1028)
Q Consensus 952 L~FvTG~sr~P~~Gf~~l~p-----~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~GF~ 1026 (1028)
|+|||||+|+|++||+.|+| +|+|++.+ ++++||+||||||+|+||.|+|+++|++||++||++++|||
T Consensus 354 L~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~------~~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~~~GFg 427 (429)
T 3olm_A 354 LQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAG------EVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFG 427 (429)
T ss_dssp HHHHHSCSCBCTTCGGGCEETTEECCEEEECCS------CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHHTC---
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC------CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 958518998897530004676777218996289------87789722014377689798999999999999997279878
Q ss_pred C
Q ss_conf 8
Q 001688 1027 L 1027 (1028)
Q Consensus 1027 L 1027 (1028)
+
T Consensus 428 ~ 428 (429)
T 3olm_A 428 Q 428 (429)
T ss_dssp -
T ss_pred C
T ss_conf 7
No 5
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=1.00 E-value=1 Score=722.46 Aligned_cols=365 Identities=33% Similarity=0.592 Sum_probs=338.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH
Q ss_conf 61011899999999999841999987551189808745899999864799000157279999833675334435788439
Q 001688 638 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 717 (1028)
Q Consensus 638 pf~~rv~~f~~~i~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~g~~E~GiD~GG~~r 717 (1028)
+|+.|+.+|+..+.... .-...+++|||+++++|+++++...++.++|++++|+|+| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~~~~~~-------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~g-----E~G~D~GG~~r 70 (374)
T 1nd7_A 3 GFRWKLAHFRYLCQSNA-------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLAR 70 (374)
T ss_dssp THHHHHHHHHHHHHHTC-------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHHH
T ss_pred CHHHHHHHHHHHHHHCC-------CCCCEEEEECCCCHHHHHHHHHHHCCHHHCCCEEEEEECC-----CCCCCCCCCHH
T ss_conf 75899999999986247-------9997699987887799999999836987615548999888-----77757884289
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC--EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 999999999633358974335740--174299998861457679998745577787639702667719899974168999
Q 001688 718 DFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 795 (1028)
Q Consensus 718 Ef~~~l~~~~f~p~~glF~~~~~~--~l~pnp~~~~~~~~~l~~f~fiG~llGkal~~g~~i~l~f~~~f~k~Llg~~~~ 795 (1028)
|||+++++++|+|++|||..++++ .++|||.+. ..++++++|+|+|+++|+|||+|.++|++|+++|||+|+|.+++
T Consensus 71 Eff~ll~~el~~p~~~lF~~~~~~~~~~~~~p~s~-~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~ 149 (374)
T 1nd7_A 71 EWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLT 149 (374)
T ss_dssp HHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCC
T ss_conf 99999999973976465431588883220487445-78779999999899987998659743785879999999389887
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89666789665788898860146433320138998055785014743599954213511199999999999983879999
Q 001688 796 LNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQ 875 (1028)
Q Consensus 796 l~DL~~~Dp~l~~~L~~l~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q 875 (1028)
++||+++||++|++|.++++++.+..+++++|+++.+.+|...++||+|||++++||.+||.+||+++++|+++++++.|
T Consensus 150 l~Dl~~~Dp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q 229 (374)
T 1nd7_A 150 IKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQ 229 (374)
T ss_dssp HHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 88999961999986542135985253110158875114785004744789967452311099999999999970209999
Q ss_pred HHHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHCEEE
Q ss_conf 99999988583301332079999998821488887797887340440798889868999999999509999997622001
Q 001688 876 SSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFV 955 (1028)
Q Consensus 876 ~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~Fv 955 (1028)
++||++||++|+|.+|+++|+|+||+.+|||.++ ||+++|++||.|.| |+++|++|+|||+|+++|++|+|++||+||
T Consensus 230 ~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~Fv 307 (374)
T 1nd7_A 230 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFV 307 (374)
T ss_dssp HHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHEEECC-CCCCCCCEEEHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999986465089899846999999998569987-88898751069748-998984025499999865999999999998
Q ss_pred CCCCCCCCCCCCCCC-----CCEEEECCCCCCCCCCCCCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 476777889855678-----81688517899899679999632054481214799999999999999997199
Q 001688 956 TGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA 1023 (1028)
Q Consensus 956 TG~sr~P~~Gf~~l~-----p~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~ 1023 (1028)
|||+|+|++||+.|. ++|+|++.+ ++++||+||||||+|+||+|+|+++|++||++||++++
T Consensus 308 TGs~rlP~~Gf~~L~~~~gp~~f~I~~~~------~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e 374 (374)
T 1nd7_A 308 TGTCRLPLGGFAELMGSNGPQKFCIEKVG------KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp HSCSCCCTTCGGGCEETTEECCEEEECCS------CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred HCCCCCCCCCHHHCCCCCCCCCEEEEECC------CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 48998898433221566788765997589------89869778716598779898999999999999997149
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=1.00 E-value=1 Score=719.66 Aligned_cols=345 Identities=34% Similarity=0.618 Sum_probs=325.3
Q ss_pred EEEEECCCHHHHHHHHHC---CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CE
Q ss_conf 189808745899999864---79900015727999983367533443578843999999999963335897433574-01
Q 001688 667 RFRIRRDHILEDAYSQMS---TMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-HL 742 (1028)
Q Consensus 667 ~i~VrR~~i~eda~~~l~---~~~~~~lk~~l~V~F~~e~g~~E~GiD~GG~~rEf~~~l~~~~f~p~~glF~~~~~-~~ 742 (1028)
+++|||++|++|+++++. ..++.++|++++|+|+| |+|+|+|||+||||+++++++|+|++|||..+++ +.
T Consensus 7 ~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~~ 81 (358)
T 1c4z_A 7 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEG-----EQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKL 81 (358)
T ss_dssp CEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETT-----CCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTTE
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEECC-----CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCE
T ss_conf 99976875799999999987326979865746999778-----7674888639999999999971876795565289984
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-
Q ss_conf 7429999886145767999874557778763970266771989997416899989666789665788898860146433-
Q 001688 743 LYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADIS- 821 (1028)
Q Consensus 743 l~pnp~~~~~~~~~l~~f~fiG~llGkal~~g~~i~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~~L~~l~~~~~dv~- 821 (1028)
+||||.+.. ..++|+|+|+++|+|||+|.++|++|+++|||+|+|++++++||+++||++|++|++++++++|++
T Consensus 82 ~~~np~s~~----~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~~~ 157 (358)
T 1c4z_A 82 FWFNPSSFE----TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVED 157 (358)
T ss_dssp EEECTTCCS----CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHHH
T ss_pred EEECCCCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHCCCCHHH
T ss_conf 742773223----3577886999999999779976876889999999589998899998699999999999855776666
Q ss_pred CCEEEEEEEE-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC-CCCHHH
Q ss_conf 3201389980-55785014743599954213511199999999999983879999999999885833013320-799999
Q 001688 822 ELELYFVILN-NEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWID-MFNEHE 899 (1028)
Q Consensus 822 ~l~L~Ft~~~-~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~-~F~~~E 899 (1028)
+++++|++.. +.+|...++||+|||++++||.+||.+||+++++|+++++++.|++||++||++|+|..++. +|+|+|
T Consensus 158 ~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~E 237 (358)
T 1c4z_A 158 DMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEE 237 (358)
T ss_dssp HTCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHH
T ss_pred HCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHH
T ss_conf 50350787414568975346447798666544212999999999998621099999999988887369525334899999
Q ss_pred HHHHHCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHCEEECCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 98821488887797887340440798889868999999999509999997622001476777889855678816885178
Q 001688 900 LQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAA 979 (1028)
Q Consensus 900 L~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~Gf~~l~p~f~I~~~~ 979 (1028)
|+.++||.++ ||+++|++||+|.|||+++|++|+|||+|+++|++|+|++||+|||||+|+|++||+.| +|+|++.+
T Consensus 238 Le~li~G~~~-id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~~I~~~~ 314 (358)
T 1c4z_A 238 IELLICGSRN-LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNG 314 (358)
T ss_dssp HHHHHHCBCC-CCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEEEE
T ss_pred HHHHHHCCCC-CCHHHHHHHCEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC--EEEEECCC
T ss_conf 9998613567-88999998713178989776045369999973999999999989708997899885545--24620478
Q ss_pred CCCCCCCCCCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9989967999963205448121479999999999999999719986689
Q 001688 980 GSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 1028 (1028)
Q Consensus 980 ~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~GF~Ls 1028 (1028)
. ++++||+||||||+|+||+|+|+++|++||++||++++||||+
T Consensus 315 ~-----~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GFgl~ 358 (358)
T 1c4z_A 315 P-----DTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 358 (358)
T ss_dssp E-----SCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC------
T ss_pred C-----CCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9-----8888807873578868989899999999999999818997849
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=1.00 E-value=1 Score=261.23 Aligned_cols=108 Identities=26% Similarity=0.445 Sum_probs=102.4
Q ss_pred CCHHHHHHCCEECCCCCCCC----HHHHHHHHHHHHCCHHHHHHHCEEECCCCCCCC--CCCCCCCCCEEEECCCCCCCC
Q ss_conf 79788734044079888986----899999999950999999762200147677788--985567881688517899899
Q 001688 911 LDFDDLRQNTNYVGGYHSEH----YVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPL--LGFKYLEPLFCIQRAAGSASE 984 (1028)
Q Consensus 911 id~~dl~~~t~y~ggy~~~~----~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~--~Gf~~l~p~f~I~~~~~~~~~ 984 (1028)
||++||++||+|.|+|++++ ++|+|||+|+++|++|+|++||+|||||+|+|+ +||+.+ |+|+|+. +
T Consensus 4 ~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~~-~----- 76 (118)
T 3pt3_A 4 GSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRP-P----- 76 (118)
T ss_dssp --------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEES-C-----
T ss_pred CCHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCEEEEC-C-----
T ss_conf 38999983327718867775320569999999999799999999882743899888765675569-8479978-9-----
Q ss_pred CCCCCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6799996320544812147999999999999999971998668
Q 001688 985 EALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDL 1027 (1028)
Q Consensus 985 ~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~GF~L 1027 (1028)
++++||+||||||+|+||.|+|+++|++||++||++ +|||+
T Consensus 77 -~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf 117 (118)
T 3pt3_A 77 -DDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF 117 (118)
T ss_dssp -CTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred -CCCCCCCCEEHHCEEECCCCCCHHHHHHHHHHHHHH-CCCCC
T ss_conf -988793200021263797989999999999999984-79478
No 8
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=37.14 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99733459888788989999999
Q 001688 43 RRQNHAAIKIQKCFRGKKAMEIE 65 (1028)
Q Consensus 43 rr~~~aAi~IQ~~~Rg~~~r~~~ 65 (1028)
.+++.||++||++||||++|+..
T Consensus 25 ~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 25 EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98888899999999869999866
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=35.42 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC--CC-HHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHH
Q ss_conf 788439999999999633358974335740174299998--86-14576799987455777876-397026677198999
Q 001688 712 GGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSG--MI-HEQHLQFFHFLGILLAKAMF-EGILVDIPFATFFLS 787 (1028)
Q Consensus 712 ~GG~~rEf~~~l~~~~f~p~~glF~~~~~~~l~pnp~~~--~~-~~~~l~~f~fiG~llGkal~-~g~~i~l~f~~~f~k 787 (1028)
.|+-||+=+..++..+-..+ +-|.. ..-||.... .. .+.-+...+..|.+=+.-|. .|.+.-.+|..|+-+
T Consensus 636 v~~~fk~sL~~Lm~~L~~t~-phfVR----CIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~R 710 (1080)
T 2dfs_A 636 VGHQFRNSLHLLMETLNATT-PHYVR----CIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSR 710 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHSSE-EEEEE----EECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC-CEEEE----EECCCCCCCCHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 89999999999999997069-86688----75688878810067786287985266177775875387851148899999
Q ss_pred H
Q ss_conf 7
Q 001688 788 K 788 (1028)
Q Consensus 788 ~ 788 (1028)
+
T Consensus 711 Y 711 (1080)
T 2dfs_A 711 Y 711 (1080)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 10
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=1.00 E-value=1 Score=35.15 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997334598887889899999999999999
Q 001688 39 RLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQ 72 (1028)
Q Consensus 39 R~~~rr~~~aAi~IQ~~~Rg~~~r~~~~~~~r~e 72 (1028)
+.--.=|..++|+||+.+|||++|++.+..++.-
T Consensus 38 knKI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~ 71 (148)
T 3gn4_A 38 KNKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGL 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999998999999999999998653499999
Done!