BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001690
(1028 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43
PE=2 SV=1
Length = 811
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 218/776 (28%), Positives = 365/776 (47%), Gaps = 72/776 (9%)
Query: 250 PTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKN-----CPTCRQE 304
P +Y E+ +CPL ++M +PV + G +FER+AI++ FQ +N CP +E
Sbjct: 20 PGIDNIY--EAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKE 77
Query: 305 LLSLDLMPNLSLRSSIEEWKQREIDLRFQNAIIKINSDDQS-----RRKSALEEMKNIME 359
L DL P+++LR++IEEW+ R N +K++ QS + L +KN+ E
Sbjct: 78 LSITDLSPSIALRNTIEEWRAR-------NDALKLDIARQSLYLGNAETNILLALKNVRE 130
Query: 360 LPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKC-----LYFLAKYSDIHKEAIVEAGAV 414
+ + K + P+LV + D S+ ++C L + + + K + E V
Sbjct: 131 ICRNIRKIRQRVCNPQLVRLITDMLKSSSHEVRCKALQTLQVVVEGDEESKAIVAEGDTV 190
Query: 415 RRIVKQICK--GETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLS--Q 470
R IVK + + + A+ VL EL+K E L EKIG+ I ++V L + + N+S +
Sbjct: 191 RTIVKFLSQEPSKGREAAVSVLFELSKSEALCEKIGSIHGAIILLVGLTSSKSENVSTVE 250
Query: 471 KAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTL 530
KA L NL + +MA G QP +A GS ET+ MA L + L+ + +K +
Sbjct: 251 KADKTLTNLERSEENVRQMAINGRLQPLLAKLLEGSPETKVSMAFYLGVLALN-NDVKVI 309
Query: 531 KDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS 590
+ ++I ++ + + A L + + + K LL++ +P L+ + +V
Sbjct: 310 VAQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAK-LLINTGILPPLIKDLFYVGP 368
Query: 591 DP---HLKHEAAEILALMVG-GCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQ 646
+ LK +A ILA +V G + + Q L SE V LQL +NT E + +
Sbjct: 369 NQLPIRLKEVSATILANIVNIGYDFDKVPVGPHHQTLVSEEIVENLLQLTSNTGPEIQGK 428
Query: 647 FLHLLVKLCYKSEKVRNLIES--NNDAITQLFSSLD-SDQPVVRRWAMRLIHCIS----E 699
L +LV L V N++ + N+ AI L ++ + +R +++L+H IS E
Sbjct: 429 LLAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLASIKLLHNISPHMSE 488
Query: 700 GNPNGVPLPPSPGKETAINTVAAIFTCSPDV-EERSLAAGIISQLPKDDIYVDEVLCKSE 758
N L + G+ ++ V+ I +P + EE++ AAG++++LP+ D+ + L +
Sbjct: 489 ELANA--LRSTVGQLGSL--VSIISENTPTITEEQAAAAGLLAELPERDLVLTMRLLREG 544
Query: 759 AL-KAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEV-Y 816
A K I +++ G GIR + + LE ++ L T E + E
Sbjct: 545 AFEKIISKIVGIRQGEIRGIRF----ERTFLEGLVSILARITFALTKETDATLFCCEKNL 600
Query: 817 PSL-IRVLSTGSSLAKQRA-ASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLS 874
PSL + +L + S QRA A+AL +LS + + T +P +S
Sbjct: 601 PSLFLDLLQSNSQDNIQRASATALENLSLES------------KNLTKIPELPPPTYCVS 648
Query: 875 MSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALET 934
+ C S C +H CS RE+FCLV+ AV LV L+ V AL AL T
Sbjct: 649 IFSCLSKPPVVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAALST 708
Query: 935 LLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDL--FQMIQKHTRITD 988
LL D + + +I ++ G+ IL VL L +T+ L + M+++ RI +
Sbjct: 709 LLEDGLDVVQGVRLIDEADGITPILNVL----LENRTENLRIRAVWMVERILRIEE 760
>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44
PE=1 SV=1
Length = 801
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 206/769 (26%), Positives = 359/769 (46%), Gaps = 82/769 (10%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQR---GGK--NCPTCRQELLSLDLMPN 313
E+ +CPL E+M DPV + G +FER+AI++ F+ G+ +CP QEL S D+ +
Sbjct: 25 EAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLTSQELTSTDVSAS 84
Query: 314 LSLRSSIEEWKQR----EIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAK 369
++LR++IEEW+ R ++D+ Q+ + + ++ AL ++ I + +
Sbjct: 85 IALRNTIEEWRSRNDAAKLDIARQSLFL---GNAETDILQALMHVRQICRTIRSNRHGVR 141
Query: 370 -AGLIPKLVEFLKDT--RLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVK----QIC 422
+ LI +++ LK T R+ +A L+ L + + D K + E VR +VK +
Sbjct: 142 NSQLIHMIIDMLKSTSHRVRYKA-LQTLQVVVEGDDESKAIVAEGDTVRTLVKFLSHEPS 200
Query: 423 KGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLS--QKAHDVLQNLS 480
KG A+ +L EL+K E L EKIG+ + ++V L +N+ N+S +KA L+N+
Sbjct: 201 KGREA--AVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRTLENME 258
Query: 481 HNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVI 540
+ +MA G QP + GS ET+ MAS L + L+ + +K L + +++
Sbjct: 259 RSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLN-NDVKVLVAQTVGSSLV 317
Query: 541 QMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDP---HLKHE 597
++ S + A LK + + + K +L+ +P L+ + +V + LK
Sbjct: 318 DLMRSGDMPQREAALKALNKISSFEGSAK-VLISKGILPPLIKDLFYVGPNNLPIRLKEV 376
Query: 598 AAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKL--C 655
+A ILA +V L SE+ V L LI+NT + + L +LV L C
Sbjct: 377 SATILANIV------NIGYDFDKATLVSENRVENLLHLISNTGPAIQCKLLEVLVGLTSC 430
Query: 656 YKS-EKVRNLIESNNDAIT--QLFSSLDSDQPVVRRWAMRLIHCISEGNPNGV--PLPPS 710
K+ KV I+++ I+ Q ++D +R +++L+H +S + L +
Sbjct: 431 PKTVPKVVYAIKTSGAIISLVQFIEVRENDD--LRLASIKLLHNLSPFMSEELAKALCGT 488
Query: 711 PGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEAL-KAIHEVICS 769
G+ ++ VA I +P EE++ AAG++++LP D+ + + + + A K I +V
Sbjct: 489 AGQLGSL--VAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGI 546
Query: 770 MDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLE-VYPSLIRVLSTGSS 828
G G+R F +P L R + ++ V+ R ++
Sbjct: 547 RQGDIKGMR-------------------FVNPFLEGLVRILARITFVFNKEARAINF--- 584
Query: 829 LAKQRAASALADLSQS---------TSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCC 879
+ AS L QS +++++ N +L + + T MP S+ C
Sbjct: 585 CREHDVASLFLHLLQSNGQDNIQMVSAMALENLSLESIKL-TRMPDPPPVNYCGSIFSCV 643
Query: 880 SSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADH 939
C +H CS RETFCLV+ AV+ LV L+ V EAAL AL +LL D
Sbjct: 644 RKPHVVNGLCKIHQGICSLRETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDG 703
Query: 940 STLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITD 988
+ + ++ ++ G+ IL VL + T+ M+++ RI D
Sbjct: 704 LDVEKGVKILDEADGIRHILNVLRENRTERLTRR--AVWMVERILRIED 750
>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana
GN=PUB42 PE=2 SV=1
Length = 1033
Score = 144 bits (362), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 188/753 (24%), Positives = 346/753 (45%), Gaps = 82/753 (10%)
Query: 257 PIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGK----NCPTCRQELLSLDLMP 312
P ++ +CPL E+MEDPV G + ER+A+ E F G NCP Q+L + +L
Sbjct: 246 PYQAFICPLTKEIMEDPVTTETGVTCERQAVIEWFDSFGNSDEINCPVTGQKLTT-ELSA 304
Query: 313 NLSLRSSIEEWKQREIDLRFQNAIIKIN-SDDQSRRKSALEEMKNIMELPQYAE-KAAKA 370
N+ L++ I+EWK R R + A ++ +S AL +++ E +Y + + +A
Sbjct: 305 NVVLKTIIQEWKVRNEAARIKVAHAALSLGGSESMVIDALRDLQMTCEGKEYNKVQVREA 364
Query: 371 GLIPKLVEFL----KDTRLSTEAILKCLYFLA-KYSDIHKEAIVEAGAVRRIVKQICKGE 425
G+I L +L KD R +LK L LA + +D KE IV+ + ++K +
Sbjct: 365 GIIQLLDRYLTYRSKDVRFE---LLKFLRTLADEETDDGKEMIVKTITMSCVIKLLGSSH 421
Query: 426 --TMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNN--NPNLSQKAHDVLQNLSH 481
A +L EL+K + EKIG + I ++V+ +N + S+ + +L+NL
Sbjct: 422 QPVRHAAQALLLELSKSQHACEKIGTARGAILMLVTAKYNRELDSFASETSDQILRNLEK 481
Query: 482 NTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQ 541
+MAE+G +P + GS+ET+ MA+ L + + KT + +I
Sbjct: 482 CPENIKQMAESGLLEPLLGHLAEGSEETQVAMAAYLVEIDIGHEK-KTYVAEKACPALIG 540
Query: 542 MLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLG--LIQFVRSD-PHLKHEA 598
++ S + + A K + + + K +L++ I +++ + V SD + ++EA
Sbjct: 541 LVQSENIDARRAAFKALAHISLYHPNNK-ILVEVGIIKIMVEEMFTKRVFSDLMNSRNEA 599
Query: 599 AEILA-LMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERET-KIQFLHLLVKLCY 656
A ILA ++ G +H FE++ L S++ V + ++ N+ + I + +L+ L
Sbjct: 600 ATILANILESGLEHETFEVNTHGHTLGSDYFVYNIIHMLKNSSPDDLNIDLIRILLSLSK 659
Query: 657 KSEKVRNLIE--SNNDAITQLFSSLDSDQPVVRRWAMRLI--------HCISE------G 700
+ ++ DA + +++ + A++L+ H +SE G
Sbjct: 660 SPRAMATIVSVIKETDASFAMIELINNPHDELGVGALKLLIALTPYIGHTLSERLCKTRG 719
Query: 701 NPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCK---- 756
P + P + E+ +++A ++++LP ++ ++ L
Sbjct: 720 QPENLIQCPVEANQI--------------TEKHAVSAKLLAKLPHQNLTLNLALVNESIV 765
Query: 757 SEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFT----DPTKPELQRQVGK 812
SE L AIH + + +G RT LE + L+ FT +P L R
Sbjct: 766 SEILHAIHLI------QRSGARTSRYA-TDFLEGLVGILVRFTTTLYEPQMMYLARNHDL 818
Query: 813 LEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLL 872
V+ L+ + T S ++ +A+ L +LS ST++++S + TK M L
Sbjct: 819 TSVFVDLL--MKTSSDEVQRLSATGLENLS-STTMTLSRPP-QPRSTKF------MGSLS 868
Query: 873 LSMSWCCSSWGDHQSS-CSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTA 931
+ S+ S Q C++H CS + TFCLV+A+A+ L+ L + V E+AL A
Sbjct: 869 MPRSFSLRSSKKKQIEICAIHRGVCSAKNTFCLVEANAITKLLACLQSDKVEVVESALAA 928
Query: 932 LETLLADHSTLSHAIAVIVDSQGVLAILQVLEK 964
+ TLL D + +++++ + V IL +++
Sbjct: 929 ICTLLDDKVEVEKSLSMLSEMNAVQLILNAVKE 961
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 28/264 (10%)
Query: 239 ELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNC 298
++V + DE+ + P++ +CP+ ELM+DPV + G ++ER IQ G C
Sbjct: 224 KMVNKNTDESKKSDKLTIPVD-FLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTC 282
Query: 299 PTCRQELLSLDLMPNLSLRSSIEEW--------KQREIDLRFQNA---------IIKINS 341
P +Q+L + L PN LRS I W I+ R +N+ + +++S
Sbjct: 283 PKTQQKLENFTLTPNYVLRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSS 342
Query: 342 DDQSRRKSALEEMKNIMELPQYAE-KAAKAGLIPKLVEFLKDTRLST-EAILKCLYFLAK 399
R++A+ E++++ + A+AG IP LV L ++T E + C+ L+
Sbjct: 343 RSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSI 402
Query: 400 YSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEK----IGNTKDCIT 455
Y + +KE I+ AGAV IV Q+ + TM EA E + +L ++ IG + I
Sbjct: 403 YEN-NKELIMFAGAVTSIV-QVLRAGTM-EARENAAATLFSLSLADENKIIIGGS-GAIP 458
Query: 456 IMVSLLHNNNPNLSQKAHDVLQNL 479
+V LL N P + A L NL
Sbjct: 459 ALVDLLENGTPRGKKDAATALFNL 482
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 150/324 (46%), Gaps = 32/324 (9%)
Query: 209 LKQEKEELEAEKKQ--AEALQLTQLMQLLYSTELVRRPQ-DEAIPTYCQVYPIESLVCPL 265
L Q+K L E KQ E L + +Q L +T+++ +P ++AI + +CP+
Sbjct: 239 LIQDKGGLNIETKQHIIELLNKFKKLQGLEATDILYQPVINKAITKSTSLILPHEFLCPI 298
Query: 266 CNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQ 325
E+M DPV I G ++E+++IQ+ F G K CP RQEL L L PN +L++ I +W +
Sbjct: 299 TLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFALKNLIMQWCE 358
Query: 326 REIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKDTRL 385
+ F+ +++ D Q+ +K + LVE L ++L
Sbjct: 359 KN---NFKIPEKEVSPDSQNEQKDE----------------------VSLLVEALSSSQL 393
Query: 386 STEA-ILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGET--MPEAIEVLSELTKRET 442
+ +K + LA+ + ++ I AGA+ +V+ + ++ A+ L L+ E
Sbjct: 394 EEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDE- 452
Query: 443 LGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF 502
+ +K+ + + I ++ +L N N + + L +LS V + + P V
Sbjct: 453 VNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLL 512
Query: 503 NRGSQETRALMASALRNMRLDESS 526
G+ + +AL N+ L+ ++
Sbjct: 513 QHGTLRGKKDALTALFNLSLNSAN 536
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 42/403 (10%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRS 318
E +CP+ ELM+DP + G ++ER IQ G +CP +Q+L + L PN LRS
Sbjct: 245 EDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRS 304
Query: 319 SIEEWKQR---EIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPK 375
I +W + E + N K NSD R S + +A L+ K
Sbjct: 305 LISQWCTKHNIEQPGGYMNGRTK-NSDGSFRDLS--------------GDMSAIRALVCK 349
Query: 376 L-VEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAI 431
L + ++D R + I L+K S ++ I EAGA+ +VK + ET A+
Sbjct: 350 LSSQSIEDRRTAVSEIRS----LSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAV 405
Query: 432 EVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAE 491
+ L+ E E I +T +V +L + + A L +LS + +
Sbjct: 406 TCILNLSIYEHNKELI-MLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGA 464
Query: 492 AGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCK 551
+G V GS + A+AL N+ + + + + +++ML+ +S
Sbjct: 465 SGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERM 524
Query: 552 SACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALM------ 605
+ I +++A +++ K +L IP L+ +Q + P + AA IL +
Sbjct: 525 ADEALTILSVLASNQVAKTAILRANAIPPLIDCLQ--KDQPRNRENAAAILLCLCKRDTE 582
Query: 606 ----VG--GCQHPQFELHHGLQELQSEHNVNVFLQLIANTERE 642
+G G P EL E +++ N L+L+ + R+
Sbjct: 583 KLISIGRLGAVVPLMELSRDGTE-RAKRKANSLLELLRKSSRK 624
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 37/215 (17%)
Query: 237 STELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGK 296
+ +V R + IP Y + CP+ ELM+DPV + G ++ER +IQ+ G K
Sbjct: 236 GSRIVSRHRSPVIPEYFR--------CPISLELMKDPVIVSTGQTYERSSIQKWLDAGHK 287
Query: 297 NCPTCRQELLSLDLMPNLSLRSSIEEW--------KQREIDLRFQNAIIKINSD-DQSRR 347
CP ++ LL L PN L+S I W Q + R +SD D++
Sbjct: 288 TCPKSQETLLHAGLTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFV 347
Query: 348 KSALEEMKNIMELPQYAEKA----------------AKAGLIPKLVEFLK--DTRLSTEA 389
S LE++ N Q A A+AG IP LVE L D R +
Sbjct: 348 LSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHS 407
Query: 390 ILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG 424
+ L ++ +K AIV+AGA+ IV+ + G
Sbjct: 408 VTALLNL--SINEGNKGAIVDAGAITDIVEVLKNG 440
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 195/464 (42%), Gaps = 39/464 (8%)
Query: 77 ALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIA 136
AL ++ L A +++ S++ L+L+ + V+ + Q + + +S NLEI+
Sbjct: 64 ALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQALSIIPYENLEIS 123
Query: 137 LNLKAMTDQIVDSLRSMEFQSVA--AAEAIASEIERSALQNNKNRENALE--LLRKIAEA 192
LK + ++ LR +S+ + E+ + L R + +E ++R++AE
Sbjct: 124 DELKEQVELVLVQLR----RSLGKRGGDVYDDELYKDVLSLYSGRGSVMESDMVRRVAEK 179
Query: 193 VGASVNASLVQTELELLKQ-----EKEELEAEKKQAEALQLTQLMQLLYSTELVRRPQ-- 245
+ L Q L LL + E+ +K + L+ + Y+ L P
Sbjct: 180 LQLMTITDLTQESLALLDMVSSSGGDDPGESFEKMSMVLKKIKDFVQTYNPNLDDAPLRL 239
Query: 246 DEAIPTYCQ-----VYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPT 300
++P + P E CP+ ELM DPV + G ++ER+ I++ + G CP
Sbjct: 240 KSSLPKSRDDDRDMLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPK 299
Query: 301 CRQELLSLDLMPNLSLRSSIEEW-KQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIME 359
++ L S + PN LRS I +W + I+ + I + +S S + +E I E
Sbjct: 300 TQETLTSDIMTPNYVLRSLIAQWCESNGIEPPKRPNISQPSSKASSSSSAPDDEHNKIEE 359
Query: 360 LPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVK 419
L+ KL + R S ++ LAK ++ ++ AI +GA+ +V
Sbjct: 360 ------------LLLKLTSQQPEDRRSAAGEIR---LLAKQNNHNRVAIAASGAIPLLVN 404
Query: 420 QIC---KGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVL 476
+ T A+ + L+ + KI + + +V +L + + A L
Sbjct: 405 LLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATL 464
Query: 477 QNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNM 520
+LS V + AG P V + GSQ + A+AL N+
Sbjct: 465 FSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNL 508
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 149/377 (39%), Gaps = 74/377 (19%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ E+M DPV + G ++ER I++ + G CP +Q L S L PN LRS I +
Sbjct: 262 CPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQ 321
Query: 323 W---------------KQREIDL--------RFQNAIIKINSDDQSRRKSALEEMKNIME 359
W + R++ + ++ + ++ + ++SA E++ + +
Sbjct: 322 WCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAK 381
Query: 360 LPQYAEKA-AKAGLIPKLVEFLK--DTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRR 416
A A+AG IP LV L D+R+ ++ L + +K AIV AGA+
Sbjct: 382 RNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNL--SICENNKGAIVSAGAIPG 439
Query: 417 IVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVL 476
IV+ + KG + RE A L
Sbjct: 440 IVQVLKKG-----------SMEAREN-----------------------------AAATL 459
Query: 477 QNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFI 536
+LS V + G P V N G+Q + A+AL N+ + + + I
Sbjct: 460 FSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVI 519
Query: 537 HNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS-DPHLK 595
+ ++L+ L + L +H + K ++ +P L++F+R+ P +
Sbjct: 520 PTLTRLLTEPGSGMVDEALAILAILSSHPEG-KAIIGSSDAVP---SLVEFIRTGSPRNR 575
Query: 596 HEAAEILA-LMVGGCQH 611
AA +L L G QH
Sbjct: 576 ENAAAVLVHLCSGDPQH 592
>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18
PE=2 SV=1
Length = 697
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 156/352 (44%), Gaps = 47/352 (13%)
Query: 93 DDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRS 152
D + +RL +++ S+ V ++ L R I+ ++S+F + ++++ + + D +V R
Sbjct: 108 DCTRDGARLCMMMNSDQVSDHLRVLTRSISTSLSAFPVASVDLTTEVNELIDLVVRQARK 167
Query: 153 MEFQSVAAAEAIASEIERS-ALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQ 211
Q + S I R AL N+ + E+ R I + VG V+ E+ L +
Sbjct: 168 YGVQPETNDKRAVSSINRILALFVNRVVPDPDEINR-ILDHVGIRKWGDCVK-EINFLGE 225
Query: 212 E--KEELEAEKKQA--EALQLTQLMQLL------------------YSTELVRRPQDEAI 249
E E L+ +KK++ + L+ LM + + + +++ D
Sbjct: 226 EIDAERLDEKKKKSSDQVELLSSLMGFICYCRCIILGRIERDDHHNHHEDGIKKDHD--- 282
Query: 250 PTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLD 309
+ +E L+CP+ E+M DPV I GH+++R +I + F G CP + L S +
Sbjct: 283 --LIRGLKVEDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTE 340
Query: 310 LMPNLSLRSSIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAK 369
L+ N+S+R I + + N I+ SRR+ + +++ +P+
Sbjct: 341 LVDNVSVRQVIRKHCK-------TNGIVLAGI---SRRRKSHDDV-----VPESLAAKGA 385
Query: 370 AGLIPKLV--EFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVK 419
LI K + E + ++ + K S ++ +V+AGAV ++K
Sbjct: 386 GKLIAKFLTSELINGGEEMIYRAVREIRVQTKTSSFNRSCLVKAGAVTPLLK 437
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 118/279 (42%), Gaps = 24/279 (8%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ ELM+DPV + G ++ER IQ+ G K CP +Q L L PN L+S I +
Sbjct: 234 CPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQ 293
Query: 323 W-KQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLK 381
W + I+L K NS D+ KS+ + AGL+ +
Sbjct: 294 WCEANGIELPKN----KQNSRDKKAAKSSDYD---------------HAGLVSLMNRLRS 334
Query: 382 DTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGE--TMPEAIEVLSELTK 439
+ A + LAK + ++ I EAGA+ +V + + T A+ L L+
Sbjct: 335 GNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSI 394
Query: 440 RETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFV 499
E I ++ I +V +L + + A L +LS V + AG P +
Sbjct: 395 HENNKASIVDSH-AIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLI 453
Query: 500 ACFNRGSQETRALMASALRNMRLDESS-IKTLKDRQFIH 537
GS + A+A+ N+ + + + ++ +K IH
Sbjct: 454 NLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIH 492
>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16
PE=2 SV=1
Length = 674
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 92/400 (23%), Positives = 174/400 (43%), Gaps = 49/400 (12%)
Query: 37 VLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYK 96
+L ++SL R + L+++ L + + + V+ + E + ++ ++IDD
Sbjct: 53 ILRRNSLS-LIRKVKILASVFDELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKSLIDDCS 111
Query: 97 SRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALN----LKAMTDQIVDSLRS 152
S+L LLLQ + V L +++ + L + +++ + + +T Q DS++
Sbjct: 112 RVSKLWLLLQIDIVAFNFHELVTDLSTVLDILPLHDFDLSDDAQDLISLLTKQCSDSVQF 171
Query: 153 MEFQSVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQE 212
++ + VA + I Q + + L KI +G S +ASL E++ L+ E
Sbjct: 172 VDARDVALRRKVTDTIAGIKHQISPDHST----LIKIFNDLGLSDSASLTD-EIQRLEDE 226
Query: 213 KEELEAEKKQAEALQLTQLMQ----LLYSTEL----VRRPQ---DEAIPTYCQVYPIESL 261
++ ++ ++ A L L++ +LY RR Q D IP
Sbjct: 227 IQDQIDDRSKSAAASLIGLVRYSKCVLYGPSTPAPDFRRHQSLSDANIPA--------DF 278
Query: 262 VCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIE 321
CP+ ELM DPV + G +++R++I Q G CP Q L L+PN +L++ I
Sbjct: 279 RCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIV 338
Query: 322 EWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLK 381
W + D + + + + K A+E K ++ LI KL
Sbjct: 339 LWCR---DQKIPFELYGDGGGEPAPCKEAVEFTKMMVSF-----------LIEKL----- 379
Query: 382 DTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQI 421
+ + ++ L LAK + + I EAGA+ ++V+ +
Sbjct: 380 -SVADSNGVVFELRALAKSDTVARACIAEAGAIPKLVRYL 418
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 39/261 (14%)
Query: 79 ETLGAQLREAHNIIDDYKSR-SRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIAL 137
E L + + +A ++D+ + S+L + Q +L ++Q + EI+ I L
Sbjct: 67 EDLDSVVNQAREFLEDWSPKLSKLFGVFQCEVLLGKVQTCSLEIS-----------RILL 115
Query: 138 NLKAMTDQIVDSLRSME--FQSVAA--AEAIASEIERSALQNNKNRENALE--LLRKIAE 191
L + + + S++S+E Q + E E+ +AL+N K+ +L+ L I +
Sbjct: 116 QL-SQSSPVTSSVQSVERCVQETESFKQEGTLMELMENALRNQKDDITSLDNNHLESIIQ 174
Query: 192 AVGASVNASLVQTELELLKQEKEEL--EAEKKQAEALQLTQLMQL-------LYSTELVR 242
+G N L++ E + EKE + +A K + + Q QL++L + TE +
Sbjct: 175 MLGLISNQDLLK---ESITVEKERIRSQASKSEEDMEQTEQLIELVLCIREHMLKTEFLE 231
Query: 243 RPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCR 302
+ +IP Y + CPL ELM DPV + G +F+R +I++ G CP R
Sbjct: 232 VAKGISIPPYFR--------CPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTR 283
Query: 303 QELLSLDLMPNLSLRSSIEEW 323
Q L +L+PN ++++ I W
Sbjct: 284 QVLTHQELIPNYTVKAMIASW 304
>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2
PE=2 SV=1
Length = 707
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 113/468 (24%), Positives = 193/468 (41%), Gaps = 50/468 (10%)
Query: 153 MEFQSVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQE 212
+E + A + I+ I+++ K E+L KIAE+ G N ++ E +L
Sbjct: 138 IELVKLVARDEISYTIDQALKDQKKGVGPTSEVLVKIAESTGLRSNQEIL-VEGVVLTNM 196
Query: 213 KEELEAEKKQAEALQLTQLMQLLYSTELVRRPQD-EAIPTYCQVYPIESLVCPLCNELME 271
KE+ E EA L L+ L +T++ D + C V C L ELM
Sbjct: 197 KEDAELTDNDTEAEYLDGLISL--TTQMHEYLSDIKQAQLRCPVRVPSDFRCSLSLELMT 254
Query: 272 DPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREIDLR 331
DPV + G +FER IQ+ G CP RQ L L PN +R+ + W + ++
Sbjct: 255 DPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIVRAFLASWCETN-NVY 313
Query: 332 FQNAIIKINSDD------QSRRKSALE----EMKNIMELPQ-YAEKAAKAGLIPKLVEFL 380
+ + I+S + +S R S+ E E + EL Q ++ A+ G++ ++V
Sbjct: 314 PPDPLELIHSSEPFPLLVESVRASSSENGHSESLDAEELRQVFSRSASAPGIVSEVV--C 371
Query: 381 KDTRLSTEAILKCLYFL-----------AKYSDIHKEAIVEAGAVRRIVKQICK------ 423
K R + A + L ++ I + E G+ I ++ K
Sbjct: 372 KTKRNNNAAADRSLTRSNTPWKFPEERHWRHPGIIPATVRETGSSSSIETEVKKLIDDLK 431
Query: 424 ---GETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLS 480
+T EA + L + T + + I +VSLL++ + + A L NLS
Sbjct: 432 SSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLS 491
Query: 481 HNTHFAVKMAEAGYFQPFVACFNRGS-QETRALMASALRNMRLDESSIKTLKDRQFIHNV 539
N + +AE+G P + G +E +A A+ L ++ + E + + I +
Sbjct: 492 INDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPL 551
Query: 540 IQMLSSNSPVCKSACLKCI---------KTLIAHSKMVKHL--LLDPA 576
+ +L S S K + KT + + V++L L+DPA
Sbjct: 552 VDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPA 599
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 11/151 (7%)
Query: 362 QYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQI 421
+Y + +AG I LV+ L LS + F +K ++EAGAVR +V+ +
Sbjct: 537 EYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM 596
Query: 422 CKGETMPE-AIEVLSEL-TKRE---TLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVL 476
M E A+ VL+ L T RE +GE+ G I ++V ++ + + A L
Sbjct: 597 DPAFGMVEKAVVVLANLATVREGKIAIGEEGG-----IPVLVEVVELGSARGKENATAAL 651
Query: 477 QNL-SHNTHFAVKMAEAGYFQPFVACFNRGS 506
L +H+ F + G P VA G+
Sbjct: 652 LQLCTHSPKFCNNVIREGVIPPLVALTKSGT 682
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 120/593 (20%), Positives = 244/593 (41%), Gaps = 99/593 (16%)
Query: 91 IIDD-YKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDS 149
++DD + ++L +L+ S V + + L R I+ ++ +F + ++++ + + ++
Sbjct: 104 LLDDCTRDGAKLYMLMNSGQVSAHFRDLTRSISTSLDTFPVRSVDLPGEVNELIYLVMRQ 163
Query: 150 LRSMEFQ-SVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELEL 208
R E + AI S L N+ N+ E+LR + + +G V+ E++
Sbjct: 164 TRKSEARPDRDDKRAIDSVYWFFNLFENRINPNSDEILR-VLDHIGVRKWRDCVK-EIDF 221
Query: 209 LKQEKEELEAEKKQAEALQLTQLMQLL-YSTELVRRPQDEAIPT---------YCQVYPI 258
L++E +K E L+ LM + Y ++ R D + +
Sbjct: 222 LREEISV--GKKSNIEIELLSNLMGFICYCRCVILRGIDVDDEEKDKEEDDLMMVRSLNV 279
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRS 318
+ L CP+ E+M DPV + GH+++R +I + F G CP + L+S L+ N S++
Sbjct: 280 DDLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLVSTVLVDNFSVKQ 339
Query: 319 SIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVE 378
I+ + + QN ++ + ++K + E AE+A K E
Sbjct: 340 VIQSYSK-------QNGVVM---GQKGKKKVDVAE-------SLAAEEAGKL-----TAE 377
Query: 379 FLKD--TRLSTEAILKCLY---FLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEV 433
FL + E ++K L L K S ++ +VEAG V ++K
Sbjct: 378 FLAGELIKGDEEEMVKALVEIRILTKTSTFYRSCLVEAGVVESLMK-------------- 423
Query: 434 LSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMA--E 491
+L +++P + + A + NLS + ++ +
Sbjct: 424 --------------------------ILRSDDPRIQENAMAGIMNLSKDIAGKTRIVGED 457
Query: 492 AGYFQPFVACFNRGS-QETRALMASALRNM-RLDESSIKTLKDRQFIHNVIQMLSS--NS 547
G + V N G+ +E+R A+AL + L + S + I +++++ S
Sbjct: 458 GGGLRLIVEVLNDGARRESRQYAAAALFYLSSLGDYSRLIGEISDAIPGLVRIVKSCDYG 517
Query: 548 PVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVG 607
K L I++L+ + +L +P+LL L++ + ++ ILA M
Sbjct: 518 DSAKRNALIAIRSLLMNQPDNHWRILAAGIVPVLLDLVKSEEISDGVTADSMAILAKM-- 575
Query: 608 GCQHPQFELHHGLQELQSEHNVNVFLQLIANTERE--TKIQFLHLLVKLCYKS 658
++P G+ + + + ++++ ++E TK + LL+ LC+
Sbjct: 576 -AEYPD-----GMISVLRRGGLKLAVKILGSSEVSPATKQHCVALLLNLCHNG 622
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 242 RRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTC 301
+R ++EA T P + +CP+ +++MEDP G ++E +AI F+RG + P
Sbjct: 339 KREEEEA-STSNHREPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMI 397
Query: 302 RQELLSLDLMPNLSLRSSIEEWKQ 325
+ L L+PNL+LRS+I+EW Q
Sbjct: 398 NKRLPHTSLVPNLALRSAIQEWLQ 421
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 166/407 (40%), Gaps = 37/407 (9%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ +LM DPV G +++R +I + + G CP Q L L+PN +LRS I +
Sbjct: 303 CPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRALRSLISQ 362
Query: 323 W---KQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEF 379
W + D N + ++A+E K + LV
Sbjct: 363 WCGVYGLQYDSPESNEGMAECVAASCSSRAAMEANKATARI---------------LVRM 407
Query: 380 LKDTRLSTEAI-LKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPE--AIEVLSE 436
L+D + +A+ K + LAK ++ I + GA+ + + + + M + A+ L
Sbjct: 408 LEDGSENVKAVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLLSNDWMAQENAVTALLN 467
Query: 437 LTKRETLGEKIGNTKDCITIMVSLLHNN-NPNLSQKAHDVLQNLSHNTHF-AVKMAEAGY 494
L+ E +I + C+ ++V +L N + A L +LS +F + M E G
Sbjct: 468 LSIFEPNKGRIMEQEGCLRLIVGVLQNGWTTEAKENAAATLFSLSVVHNFKKLIMNEPGA 527
Query: 495 FQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSAC 554
+ + +G+ + AL N+ S + + + +IQ L N V + A
Sbjct: 528 VEELASMLTKGTSRGKKDAVMALFNLSTHPESSARMLESCAVVALIQSL-RNDTVSEEAA 586
Query: 555 LKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQF 614
+ L+ +V + I L+GL++ R P K A L + C+
Sbjct: 587 -GALALLMKQPSIVHLVGSSETVITSLVGLMR--RGTPKGKENAVSALYEI---CRRGGS 640
Query: 615 ELHHGLQELQSEHNVNVFLQLIA--NTERETKIQFLHLLVKLCYKSE 659
L +Q + +N +Q I T+R K L+VK+C +S+
Sbjct: 641 AL---VQRVAKIPGLNTVIQTITLNGTKRAKKKA--SLIVKMCQRSQ 682
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 22/260 (8%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ ELM+DPV + G ++ER I++ G CPT +Q++ + L PN LRS I +
Sbjct: 279 CPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQ 338
Query: 323 WKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD 382
W + N + +R + + +E+A L+ KL +
Sbjct: 339 W-------------CETNGMEPPKRST---QPNKPTPACSSSERANIDALLSKLCSPDTE 382
Query: 383 TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAV--RRIVKQICKGETMPEAIEVLSELTKR 440
+ S A L+ LAK + ++ I EAGA+ + T A+ L L+
Sbjct: 383 EQRSAAAELR---LLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIH 439
Query: 441 ETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVA 500
E I ++ +I V +L N + + A L +LS + V + G V
Sbjct: 440 EDNKASIISSGAVPSI-VHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVV 498
Query: 501 CFNRGSQETRALMASALRNM 520
GSQ + A+AL N+
Sbjct: 499 LLGEGSQRGKKDAAAALFNL 518
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 22/260 (8%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ ELM+DPV + G ++ER I++ G CPT +Q++ + L PN LRS I +
Sbjct: 279 CPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQ 338
Query: 323 WKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD 382
W + N + +R + + +E+A L+ KL +
Sbjct: 339 W-------------CETNGMEPPKRST---QPNKPTPACSSSERANIDALLSKLCSPDTE 382
Query: 383 TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAV--RRIVKQICKGETMPEAIEVLSELTKR 440
+ S A L+ LAK + ++ I EAGA+ + T A+ L L+
Sbjct: 383 EQRSAAAELR---LLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIH 439
Query: 441 ETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVA 500
E I ++ +I V +L N + + A L +LS + V + G V
Sbjct: 440 EDNKASIISSGAVPSI-VHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVV 498
Query: 501 CFNRGSQETRALMASALRNM 520
GSQ + A+AL N+
Sbjct: 499 LLGEGSQRGKKDAAAALFNL 518
>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6
PE=2 SV=2
Length = 771
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 157 SVAAAEAIASEIERSALQNNKNRENA----LELLRKIAEAVGASV---NASLVQTELELL 209
++A A+ I+R+ ++ +K +E+ L L+RK ++ + + N S T
Sbjct: 178 ALAERRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCSTPCSPT 237
Query: 210 KQEKEELEAEKKQAEALQLTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNEL 269
Q E ++ A QL++ + Y R+ IP E L CP+ +L
Sbjct: 238 GQGPNE---DRVNAFGRQLSKFGSINYKPMNSRKSGQMPIPP-------EELRCPISLQL 287
Query: 270 MEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEW 323
M DPV I G ++ER I++ F G +CP +Q+L L L PN ++ I W
Sbjct: 288 MYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASW 341
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4
PE=1 SV=3
Length = 826
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 184 ELLRKIAEAVGASVNASLVQTELELLKQEKEELEAEKKQAEALQLTQLMQLLYSTE---- 239
E+L KI E G N ++ E L+++KE E + AE L QL+ ++
Sbjct: 160 EILVKIGENTGLRSNQEIL-IEAVALERQKEMAEQSENNAEVEFLDQLIVIVNRMHERLL 218
Query: 240 LVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCP 299
L+++ Q ++ + CPL E+M DPV + G ++E+ I+ G K CP
Sbjct: 219 LIKQTQTSSVAILADFF------CPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCP 272
Query: 300 TCRQELLSLDLMPNLSLRSSIEEW 323
RQ L L+PN ++++ I W
Sbjct: 273 KTRQTLTHTTLIPNYTVKALIANW 296
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 447 IGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGS 506
IGN+ I ++V LL++ + + A L NLS N + +A+AG +P + GS
Sbjct: 579 IGNSG-AIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGS 637
Query: 507 QETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCI-------- 558
E + A+ L ++ + E + + I ++ +L + +P K +
Sbjct: 638 SEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQE 697
Query: 559 -KTLIAHSKMVKHL--LLDPA 576
K +I S V++L L+DPA
Sbjct: 698 NKAMIVQSGAVRYLIDLMDPA 718
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 24/212 (11%)
Query: 784 DASLLEIALAALLHFT--DPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADL 841
D++ E A+ ALL+ + D K + G +E LI VL GSS AK+ +A+ L L
Sbjct: 596 DSATQENAVTALLNLSINDNNKKAIA-DAGAIE---PLIHVLENGSSEAKENSAATLFSL 651
Query: 842 SQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRET 901
S + + Q+ + P+ D+ + G ++ ++ +
Sbjct: 652 S-----VIEENKIKIGQSGAIGPLVDLLG-------NGTPRGKKDAATALFNLSIHQENK 699
Query: 902 FCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQV 961
+V++ AV+ L+ +L D +G+ + A+ +LA+ +T+ I G+ +++V
Sbjct: 700 AMIVQSGAVRYLI-DLMDPAAGMVDKAV----AVLANLATIPEGRNAIGQEGGIPLLVEV 754
Query: 962 LEKGSLSAK-TKALDLFQMIQKHTRITDTLLQ 992
+E GS K A L Q+ R + +LQ
Sbjct: 755 VELGSARGKENAAAALLQLSTNSGRFCNMVLQ 786
>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula
GN=LIN PE=2 SV=1
Length = 1488
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 257 PIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP--NL 314
P + VCP+ ++ DPV + G ++ERKAIQE G CP RQ LS +++P N
Sbjct: 513 PPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQA-LSANILPKTNY 571
Query: 315 SLRSSIEEWKQREIDL--RFQNA 335
L+ I WK++ +L F N+
Sbjct: 572 VLKRLIVSWKEQNPELAQEFSNS 594
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRS 318
E CPL NELM DPV + G ++++ IQ+ G + CP +Q L L PNL +R
Sbjct: 76 EEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIRE 135
Query: 319 SIEEW-KQREIDLRFQNAIIKINSDDQSRR 347
I +W K+ ++ + Q +N D+ R
Sbjct: 136 MISKWCKKNGLETKSQYHPNLVNEDETVTR 165
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRS 318
E C L +M DPV I G++FER IQ+ F G +CP +++L L PN+ L+S
Sbjct: 221 EKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTLKPNVELKS 280
Query: 319 SIEEW 323
I EW
Sbjct: 281 QISEW 285
>sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus
GN=CERBERUS PE=2 SV=2
Length = 1485
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 257 PIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP--NL 314
P + VCP+ ++ DPV + G ++ERKAIQE + G CP RQ LS ++P N
Sbjct: 511 PPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQP-LSASILPKTNY 569
Query: 315 SLRSSIEEWKQREIDL 330
L+ I WK++ +L
Sbjct: 570 VLKRLITSWKEQNPEL 585
>sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus
GN=LIN PE=1 SV=1
Length = 1485
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 257 PIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP--NL 314
P + VCP+ ++ DPV + G ++ERKAIQE + G CP RQ LS ++P N
Sbjct: 511 PPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQP-LSASILPKTNY 569
Query: 315 SLRSSIEEWKQREIDL 330
L+ I WK++ +L
Sbjct: 570 VLKRLITSWKEQNPEL 585
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 108/273 (39%), Gaps = 33/273 (12%)
Query: 261 LVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSI 320
VCP+ +LM DPV I G +++R +I + G CP Q L+ ++PN +L++ I
Sbjct: 309 FVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLI 368
Query: 321 EEW-------KQREI----DLRFQNA----------------IIKINSDD-QSRRKSALE 352
+W + E + F +A +IK +D Q+ + A
Sbjct: 369 VQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGSQAAQTVAAR 428
Query: 353 EMKNIMELPQYAEKA-AKAGLIPKLVEFL-KDTRLSTEAILKCLYFLAKYSDIHKEAIVE 410
E++ + + + A+AG IP L L + ++ E + + L+ Y + E
Sbjct: 429 EIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIYEKNKSRIMEE 488
Query: 411 AGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPN 467
+ IV + G E A L L+ ++I C+ + LL N P
Sbjct: 489 GDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALALLLQNGTPR 548
Query: 468 LSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVA 500
+ A L NLS + +M E G V
Sbjct: 549 GKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVG 581
>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45
PE=1 SV=1
Length = 768
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 28/215 (13%)
Query: 168 IERSALQNNKNRENA----LELLRKIAEAVGASV---NASLVQTELELLKQEKEELEAEK 220
IER+ ++++K +E+ L L+RK ++ + + N S + L + ++
Sbjct: 189 IERARMEDDKRKESIVAYLLHLMRKYSKLFRSEIWDDNDSQGSSSLPCSPTIQGSIDDAH 248
Query: 221 KQAEALQLTQLMQLLY-STELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCG 279
+A QL++L + S RR ++P E L CP+ +LM DPV I G
Sbjct: 249 GRAFDRQLSKLSSFNFRSCNNNRRSSQMSVPP-------EELRCPISLQLMYDPVIIASG 301
Query: 280 HSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQRE-----------I 328
++ER I++ F G CP Q+L L L PN +++ I W ++ +
Sbjct: 302 QTYERICIEKWFSDGHNTCPKTHQQLSHLCLTPNYCVKALISSWCEQNGVQVPDGPPESL 361
Query: 329 DLRFQNAIIKI--NSDDQSRRKSALEEMKNIMELP 361
DL + + + ++D +S ++ ++K++ +P
Sbjct: 362 DLNYWRLALSVSESTDTRSAKRVGSCKLKDVKVVP 396
>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8
PE=2 SV=1
Length = 374
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 19/222 (8%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLD-LMPNLSLRSSIE 321
CP+ E+M DPV + GH+F+R +IQ+ G + CP + L L+PN +LRS I
Sbjct: 11 CPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPNHALRSLIL 70
Query: 322 EW------------KQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQ----YAE 365
+ Q+E A+I S S LE + ++ L +
Sbjct: 71 NFAHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNASKLESLTRLVRLTKRDSSIRR 130
Query: 366 KAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGE 425
K ++G + ++ + + L D +K +V G +RRIV + G
Sbjct: 131 KVTESGAVRAALDCVDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGVIRRIVTVLRVGS 190
Query: 426 TMPEAI--EVLSELTKRETLGEKIGNTKDCITIMVSLLHNNN 465
+AI +L+ L E IG+ D I+ +VSLL N
Sbjct: 191 PDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGN 232
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ ELM+DPV I G +++R+ I++ F+ G + CP L SL+ +PN ++R I+
Sbjct: 39 CPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQIPNHTIRRMIQG 98
Query: 323 W 323
W
Sbjct: 99 W 99
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34
PE=3 SV=1
Length = 801
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ E+ME+P G ++ERKAI ++ + P RQ+L L PN +LRS+I +
Sbjct: 731 CPILREIMEEPEIAADGFTYERKAILAWLEKHNIS-PVTRQKLDHFKLTPNHTLRSAIRD 789
Query: 323 WKQREIDLRFQNAII 337
WK R +RF N ++
Sbjct: 790 WKSR---VRFSNVVV 801
>sp|Q8GXQ7|PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56
PE=2 SV=1
Length = 365
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 149 SLRSMEFQSVAAAEAIASEIERSALQN---NKNRENALELLRKIAEAVGASVNASLVQTE 205
+L S E QS E + E +R L+ + +E ++ R EA+ +S + +
Sbjct: 159 ALSSSEEQSARGIEKMYYEEQRRRLEIEELKREKEQRDKMRRVREEALSSSSGVTKILYN 218
Query: 206 LELLKQEKEELEAEKKQAEA-------LQLTQLMQLLYSTELVRRPQDEAIPTY------ 252
E+++ + E+EAE +A+A +Q+ Q L+ + +DEAI T
Sbjct: 219 EEVMR--RREVEAELNRAKAEIEDMKRVQIELKEQHYADCRLLEKERDEAIKTTEELLRA 276
Query: 253 -------------CQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCP 299
+ P + +CP+ ++M++P G+++E + GG+ P
Sbjct: 277 LEKGESSIPLQWSVSIEPPQCFICPISKDIMQNPHVAADGYTYEADEFRRWLNHGGEKSP 336
Query: 300 TCRQELLSLDLMPNLSLRSSIEEWKQR 326
L + +L+PNL LRS+I++W Q+
Sbjct: 337 MTNLRLENRNLIPNLVLRSAIKDWLQQ 363
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRS 318
E + C +C + M +P++I CGH F ++ I E + GG +CP CRQ+ L +L PN + +
Sbjct: 16 EEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNLRPNRHIAN 75
Query: 319 SIEEWKQ 325
+E KQ
Sbjct: 76 MVENLKQ 82
>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7
PE=2 SV=1
Length = 782
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 257 PIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSL 316
P E L CP+ +LM DPV I G ++ER I++ F G CP +Q+L + L PN +
Sbjct: 272 PPEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTPNNCV 331
Query: 317 RSSIEEW 323
+ I W
Sbjct: 332 KGLIASW 338
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ +LM DPV I G +++R +I G CP R L L+PN +LR I+E
Sbjct: 20 CPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLIPNHTLRRLIQE 79
Query: 323 W 323
W
Sbjct: 80 W 80
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSL 316
E + CP+C + +PV+I CGHSF ++ I + + GG CP CRQ L +L PN L
Sbjct: 12 EEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLRPNRQL 69
>sp|Q9BVG3|TRI62_HUMAN Tripartite motif-containing protein 62 OS=Homo sapiens GN=TRIM62
PE=2 SV=1
Length = 475
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQR----GGKNCPTCRQELLSLDLMPNL 314
+ L+C +C + +DPV++ C H F R+ I EH+ R G ++CP CR+ L P+L
Sbjct: 7 DELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSL 66
Query: 315 SLRSSIEEWKQREID 329
L + +E + +D
Sbjct: 67 KLANIVERYSSFPLD 81
>sp|Q9C037|TRIM4_HUMAN Tripartite motif-containing protein 4 OS=Homo sapiens GN=TRIM4 PE=2
SV=2
Length = 500
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGK--NCPTCRQELLSLDLMPNLSL 316
E L CP+C + +DPV+I CGH+F R + ++ GG CP CR L PN +L
Sbjct: 8 EELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGGGPFPCPECRHPSAPAALRPNWAL 67
Query: 317 RSSIEEWKQREI 328
E+ ++R +
Sbjct: 68 ARLTEKTQRRRL 79
>sp|Q80V85|TRI62_MOUSE Tripartite motif-containing protein 62 OS=Mus musculus GN=Trim62
PE=2 SV=1
Length = 475
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQR----GGKNCPTCRQELLSLDLMPNL 314
+ L+C +C + +DPV++ C H F R+ I EH+ R G ++CP CR+ L P+L
Sbjct: 7 DELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSL 66
Query: 315 SLRSSIEEWKQREID 329
L + +E + +D
Sbjct: 67 KLANIVERYSAFPLD 81
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 261 LVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKN-CPTCRQELLSLDLMPNLSLRSS 319
+CP+ E+M+DPV + G +++R +I++ G KN CP +Q++ DL PN +LR
Sbjct: 16 FLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLTPNHTLRRL 75
Query: 320 IEEW 323
I+ W
Sbjct: 76 IQSW 79
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGK-NCPTCRQELLSLDLMPNLSLRSSIE 321
CP+ ELM+DPV + G +++R +I+ G CP R L L+PN +LR I+
Sbjct: 20 CPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNHTLRRLIQ 79
Query: 322 EW 323
EW
Sbjct: 80 EW 81
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 239 ELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNC 298
E+ R + P Y +CP+ E+M+DP G ++E +AI Q G +
Sbjct: 315 EVSRSDEHREAPQY--------FICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETS 366
Query: 299 PTCRQELLSLDLMPNLSLRSSIEEW 323
P +L L+PNL+LRS+I+EW
Sbjct: 367 PMTNTKLHHTKLVPNLALRSAIQEW 391
>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29
PE=1 SV=1
Length = 415
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ ++M PV++ G +++R +IQ G CP Q L + D +PNL+L+ I
Sbjct: 18 CPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNLTLQRLINI 77
Query: 323 WKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD 382
W I R N + + R EE+ ++E E + K+V F+KD
Sbjct: 78 WSD-SIGRR-HNGDSPVLNPPSGREVPTKEEVNVLLERLMSLEN------LMKIVRFVKD 129
Query: 383 TRLSTEAILKCLYFLAKYSDI 403
+ + E + K + F+ DI
Sbjct: 130 SDSNREFLSKKMEFVPMLVDI 150
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 245 QDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKN-CPTCRQ 303
Q+ IP++ +CP+ ++M+DPV + G +++R++I++ G KN CP +Q
Sbjct: 3 QEIEIPSF--------FLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQ 54
Query: 304 ELLSLDLMPNLSLRSSIEEW 323
+ DL PN +LR I+ W
Sbjct: 55 VITETDLTPNHTLRRLIQSW 74
>sp|Q9D0I6|WSDU1_MOUSE WD repeat, SAM and U-box domain-containing protein 1 OS=Mus
musculus GN=Wdsub1 PE=2 SV=1
Length = 474
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 207 ELLKQEKEELEAEKKQAEALQLTQLMQLLYSTELVRRPQDE---AIPTYCQVYPIESLVC 263
ELL KE L + K E+L L ++L S E +R D IP + +C
Sbjct: 360 ELLHLTKESLAGDLK-IESLGLRS--KVLRSIEELRAKMDSLSSGIP--------DEFIC 408
Query: 264 PLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEW 323
P+ ELM+DPV G+S+ER+A++ + + P L SL L PN +L+ +I W
Sbjct: 409 PITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTLKMAINRW 468
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322
CP+ +LM+DPV I G +++R +I+ G K CP L + D +PN ++R I+
Sbjct: 37 CPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIPNHTIRKMIQG 96
Query: 323 W 323
W
Sbjct: 97 W 97
>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30
PE=2 SV=1
Length = 448
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 261 LVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSI 320
+CP+ E M+DPV + G ++ER I + F G CPT QEL + PN +L I
Sbjct: 68 FICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVTPNKTLHHLI 127
Query: 321 EEW--------KQREIDLRFQNAIIKINSDDQSR---RKSALEEMKNIM 358
W K+R D++ + AI + + +++ R AL E+K I+
Sbjct: 128 YTWFSQKYVLMKKRSEDVQGR-AIEILGTLKKAKGQARVHALSELKQIV 175
>sp|Q5BN31|TRIM5_SAIBB Tripartite motif-containing protein 5 OS=Saimiri boliviensis
boliviensis GN=TRIM5 PE=2 SV=1
Length = 494
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAI-----QEHFQRGGKNCPTCRQELLSLDLMPN 313
E + CP+C EL+ +P+++ CGHSF + I + +G ++CP CR S +L PN
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCRLPYQSENLRPN 70
Query: 314 LSLRSSIEEWKQREIDLR 331
L S +E + RE+ LR
Sbjct: 71 RHLASIVE--RLREVMLR 86
>sp|Q5D7I0|TRIM5_SAISC Tripartite motif-containing protein 5 OS=Saimiri sciureus GN=TRIM5
PE=3 SV=1
Length = 494
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAI-----QEHFQRGGKNCPTCRQELLSLDLMPN 313
E + CP+C EL+ +P+++ CGHSF + I + +G ++CP CR S +L PN
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCRLPYQSENLRPN 70
Query: 314 LSLRSSIEEWKQREIDLR 331
L S +E + RE+ LR
Sbjct: 71 RHLASIVE--RLREVMLR 86
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPN 313
E + C +C + M +P++I CGHSF ++ I E + GG CP CR+ L +L PN
Sbjct: 12 EEVTCSICLDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHFLLQNLRPN 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,502,510
Number of Sequences: 539616
Number of extensions: 12637793
Number of successful extensions: 51162
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 483
Number of HSP's that attempted gapping in prelim test: 50084
Number of HSP's gapped (non-prelim): 1399
length of query: 1028
length of database: 191,569,459
effective HSP length: 128
effective length of query: 900
effective length of database: 122,498,611
effective search space: 110248749900
effective search space used: 110248749900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)