Query 001690
Match_columns 1028
No_of_seqs 628 out of 4161
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 5.3E-56 1.2E-60 559.2 58.8 658 331-1027 14-818 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.1E-47 2.5E-52 484.1 58.7 611 332-1021 60-861 (2102)
3 COG5064 SRP1 Karyopherin (impo 100.0 4.4E-42 9.6E-47 351.0 27.6 420 452-988 71-502 (526)
4 KOG0166 Karyopherin (importin) 100.0 2.2E-41 4.7E-46 376.6 34.4 415 454-987 68-491 (514)
5 KOG4224 Armadillo repeat prote 100.0 5.2E-34 1.1E-38 294.4 23.9 465 425-988 62-528 (550)
6 KOG4224 Armadillo repeat prote 100.0 2.2E-32 4.8E-37 282.4 25.6 378 372-769 86-475 (550)
7 KOG0166 Karyopherin (importin) 100.0 5.7E-28 1.2E-32 269.6 33.4 399 536-1016 68-482 (514)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.3E-27 2.8E-32 245.2 26.1 400 535-1015 72-491 (526)
9 PF05804 KAP: Kinesin-associat 100.0 7.9E-25 1.7E-29 258.6 42.6 481 372-942 124-654 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.3E-22 2.8E-27 239.8 42.7 387 425-847 264-653 (708)
11 KOG1048 Neural adherens juncti 99.9 1E-20 2.2E-25 217.7 25.8 441 452-1002 233-706 (717)
12 KOG1048 Neural adherens juncti 99.8 7.8E-19 1.7E-23 202.3 24.9 349 413-769 234-665 (717)
13 PF04564 U-box: U-box domain; 99.7 1.3E-18 2.9E-23 147.3 4.6 72 257-328 1-72 (73)
14 KOG2122 Beta-catenin-binding p 99.7 2.5E-15 5.4E-20 178.7 24.5 355 467-845 209-603 (2195)
15 KOG2122 Beta-catenin-binding p 99.7 4.5E-15 9.8E-20 176.5 24.3 349 349-703 213-605 (2195)
16 KOG1222 Kinesin associated pro 99.6 1.9E-13 4.2E-18 147.2 25.6 388 466-942 277-668 (791)
17 KOG4199 Uncharacterized conser 99.6 6E-13 1.3E-17 138.1 27.2 335 349-698 81-443 (461)
18 KOG4199 Uncharacterized conser 99.6 1.2E-12 2.7E-17 135.8 27.2 304 341-658 118-446 (461)
19 KOG4500 Rho/Rac GTPase guanine 99.6 2.1E-12 4.5E-17 138.0 28.4 400 331-742 88-516 (604)
20 smart00504 Ubox Modified RING 99.6 2.2E-15 4.7E-20 125.0 4.3 63 260-323 1-63 (63)
21 KOG1222 Kinesin associated pro 99.5 3.8E-11 8.3E-16 129.8 29.4 384 426-846 279-666 (791)
22 PF10508 Proteasom_PSMB: Prote 99.5 2.6E-10 5.6E-15 134.8 37.3 374 375-764 42-439 (503)
23 PF04826 Arm_2: Armadillo-like 99.4 3.7E-12 8.1E-17 134.9 18.9 193 409-608 9-206 (254)
24 PF04826 Arm_2: Armadillo-like 99.4 5.2E-12 1.1E-16 133.9 19.1 195 490-699 9-205 (254)
25 PF10508 Proteasom_PSMB: Prote 99.4 1.7E-10 3.8E-15 136.3 33.5 362 334-698 81-464 (503)
26 KOG4500 Rho/Rac GTPase guanine 99.4 7.3E-11 1.6E-15 126.4 26.9 387 368-769 84-501 (604)
27 KOG1293 Proteins containing ar 99.4 5.4E-10 1.2E-14 126.6 29.5 486 459-1018 16-531 (678)
28 PRK09687 putative lyase; Provi 99.3 2.3E-10 4.9E-15 124.4 23.6 255 494-840 24-279 (280)
29 KOG2171 Karyopherin (importin) 99.3 1E-08 2.3E-13 123.5 39.3 466 332-847 6-508 (1075)
30 KOG1293 Proteins containing ar 99.3 4.1E-09 8.8E-14 119.6 29.1 485 336-847 15-537 (678)
31 PRK09687 putative lyase; Provi 99.2 5.9E-10 1.3E-14 121.1 21.1 253 412-741 23-278 (280)
32 PF15227 zf-C3HC4_4: zinc fing 99.2 4.6E-12 9.9E-17 94.0 3.0 39 263-301 1-42 (42)
33 PRK13800 putative oxidoreducta 99.2 1.7E-09 3.7E-14 137.1 27.7 273 370-741 620-895 (897)
34 PRK13800 putative oxidoreducta 99.2 4.2E-09 9E-14 133.6 30.2 277 451-840 620-896 (897)
35 KOG4642 Chaperone-dependent E3 99.2 1.7E-10 3.7E-15 115.3 13.1 219 73-328 47-279 (284)
36 PLN03208 E3 ubiquitin-protein 99.2 1.7E-11 3.6E-16 120.5 4.8 60 256-315 14-88 (193)
37 PF01602 Adaptin_N: Adaptin N 99.1 5.4E-09 1.2E-13 126.4 25.8 433 333-841 82-522 (526)
38 PF01602 Adaptin_N: Adaptin N 99.1 2.1E-08 4.5E-13 121.4 30.6 471 412-1019 42-523 (526)
39 cd00020 ARM Armadillo/beta-cat 99.1 1.1E-09 2.4E-14 103.6 13.7 117 488-607 2-120 (120)
40 cd00020 ARM Armadillo/beta-cat 99.1 9.1E-10 2E-14 104.3 12.6 113 451-563 6-120 (120)
41 TIGR00599 rad18 DNA repair pro 99.1 1E-10 2.2E-15 129.5 5.3 71 256-327 22-92 (397)
42 PTZ00429 beta-adaptin; Provisi 99.0 1E-05 2.2E-10 98.6 44.9 504 370-1021 31-547 (746)
43 KOG2171 Karyopherin (importin) 99.0 6E-07 1.3E-11 108.7 33.6 459 341-842 48-545 (1075)
44 cd00256 VATPase_H VATPase_H, r 99.0 3.2E-07 6.9E-12 103.7 27.9 324 371-698 53-424 (429)
45 PF13923 zf-C3HC4_2: Zinc fing 98.9 4.7E-10 1E-14 82.5 2.8 38 263-301 1-39 (39)
46 KOG0168 Putative ubiquitin fus 98.9 1.7E-07 3.6E-12 108.8 24.2 359 332-698 169-628 (1051)
47 KOG0823 Predicted E3 ubiquitin 98.9 6.4E-10 1.4E-14 111.0 2.7 59 257-315 44-104 (230)
48 KOG0168 Putative ubiquitin fus 98.9 3.6E-07 7.7E-12 106.2 25.1 249 506-770 181-438 (1051)
49 KOG0287 Postreplication repair 98.9 7.7E-10 1.7E-14 114.4 2.5 70 257-327 20-89 (442)
50 PF14835 zf-RING_6: zf-RING of 98.8 7.3E-10 1.6E-14 87.0 0.5 59 259-320 6-65 (65)
51 KOG0946 ER-Golgi vesicle-tethe 98.8 4.7E-05 1E-09 88.5 37.7 334 341-684 34-421 (970)
52 PTZ00429 beta-adaptin; Provisi 98.8 1.1E-05 2.5E-10 98.2 34.2 436 411-983 31-472 (746)
53 PF13445 zf-RING_UBOX: RING-ty 98.8 3.1E-09 6.8E-14 78.6 2.0 36 263-299 1-43 (43)
54 PF00097 zf-C3HC4: Zinc finger 98.7 6.1E-09 1.3E-13 77.7 3.1 39 263-301 1-41 (41)
55 KOG2023 Nuclear transport rece 98.7 8.9E-07 1.9E-11 100.4 19.5 465 412-989 10-556 (885)
56 PF13920 zf-C3HC4_3: Zinc fing 98.7 1.3E-08 2.8E-13 79.5 3.2 47 259-306 1-48 (50)
57 KOG2160 Armadillo/beta-catenin 98.7 6.8E-07 1.5E-11 96.3 17.3 186 463-656 94-282 (342)
58 KOG0320 Predicted E3 ubiquitin 98.7 1.6E-08 3.4E-13 96.4 4.3 55 257-312 128-184 (187)
59 COG5432 RAD18 RING-finger-cont 98.7 1.1E-08 2.3E-13 103.8 3.2 68 258-326 23-90 (391)
60 KOG0317 Predicted E3 ubiquitin 98.7 1.4E-08 2.9E-13 104.6 3.8 56 254-310 233-288 (293)
61 KOG0946 ER-Golgi vesicle-tethe 98.7 5.5E-06 1.2E-10 96.0 24.8 332 411-754 21-408 (970)
62 PHA02929 N1R/p28-like protein; 98.6 2.4E-08 5.3E-13 103.3 4.9 47 259-306 173-227 (238)
63 PF03224 V-ATPase_H_N: V-ATPas 98.6 7.5E-07 1.6E-11 99.4 17.2 224 372-597 56-304 (312)
64 cd00256 VATPase_H VATPase_H, r 98.6 6.1E-06 1.3E-10 93.5 23.8 333 627-983 53-426 (429)
65 PF13639 zf-RING_2: Ring finge 98.6 1.8E-08 4E-13 76.3 1.7 40 262-302 2-44 (44)
66 KOG2759 Vacuolar H+-ATPase V1 98.5 2.8E-05 6.1E-10 84.9 25.2 323 372-698 66-437 (442)
67 KOG2023 Nuclear transport rece 98.5 2.9E-05 6.3E-10 88.5 25.6 434 452-981 10-504 (885)
68 PF03224 V-ATPase_H_N: V-ATPas 98.5 2.2E-06 4.8E-11 95.7 16.3 230 452-691 55-306 (312)
69 PF11789 zf-Nse: Zinc-finger o 98.5 4.7E-08 1E-12 77.5 1.9 44 259-302 10-55 (57)
70 cd00162 RING RING-finger (Real 98.5 1E-07 2.2E-12 72.7 3.5 43 262-304 1-44 (45)
71 KOG1062 Vesicle coat complex A 98.5 0.00046 9.9E-09 81.0 33.7 285 413-745 104-414 (866)
72 KOG0978 E3 ubiquitin ligase in 98.4 3.4E-06 7.4E-11 98.9 16.0 54 259-312 642-695 (698)
73 KOG1241 Karyopherin (importin) 98.4 0.0029 6.4E-08 74.0 38.1 341 377-745 96-477 (859)
74 smart00184 RING Ring finger. E 98.4 2.6E-07 5.7E-12 67.9 3.6 39 263-301 1-39 (39)
75 KOG1241 Karyopherin (importin) 98.4 0.00027 5.9E-09 82.3 28.2 490 414-1022 4-532 (859)
76 PHA02926 zinc finger-like prot 98.3 3E-07 6.6E-12 91.1 3.6 49 258-306 168-230 (242)
77 KOG2177 Predicted E3 ubiquitin 98.3 2.6E-07 5.6E-12 105.0 3.3 68 258-328 11-78 (386)
78 KOG2160 Armadillo/beta-catenin 98.3 4.2E-05 9E-10 82.7 19.6 180 340-520 93-280 (342)
79 PF14634 zf-RING_5: zinc-RING 98.3 4.9E-07 1.1E-11 68.3 3.2 41 262-303 1-44 (44)
80 KOG1059 Vesicle coat complex A 98.3 0.00027 5.9E-09 81.7 25.8 215 454-698 146-364 (877)
81 KOG4413 26S proteasome regulat 98.3 0.0011 2.3E-08 70.0 27.8 298 430-745 63-377 (524)
82 PF05536 Neurochondrin: Neuroc 98.3 0.00073 1.6E-08 80.5 30.1 240 451-698 4-260 (543)
83 KOG0311 Predicted E3 ubiquitin 98.3 2.4E-07 5.3E-12 97.7 0.8 68 257-324 40-109 (381)
84 COG5574 PEX10 RING-finger-cont 98.2 5.6E-07 1.2E-11 91.7 3.0 56 254-309 209-265 (271)
85 KOG2164 Predicted E3 ubiquitin 98.2 5.8E-07 1.3E-11 100.0 3.1 56 260-315 186-245 (513)
86 TIGR00570 cdk7 CDK-activating 98.2 1.2E-06 2.5E-11 93.4 5.0 54 259-312 2-60 (309)
87 KOG1824 TATA-binding protein-i 98.2 0.004 8.8E-08 74.3 34.0 412 377-847 574-1040(1233)
88 KOG4413 26S proteasome regulat 98.2 0.0011 2.4E-08 69.9 25.9 324 367-695 124-480 (524)
89 TIGR02270 conserved hypothetic 98.2 0.0002 4.4E-09 81.8 22.4 239 371-699 54-296 (410)
90 KOG0213 Splicing factor 3b, su 98.2 0.004 8.7E-08 72.3 31.9 508 369-981 505-1064(1172)
91 KOG2759 Vacuolar H+-ATPase V1 98.2 0.0022 4.7E-08 70.6 28.4 312 628-983 115-439 (442)
92 KOG2973 Uncharacterized conser 98.2 0.00037 8.1E-09 73.3 21.6 290 374-699 6-315 (353)
93 KOG3678 SARM protein (with ste 98.1 0.00023 5E-09 77.9 20.1 272 404-702 172-455 (832)
94 KOG1789 Endocytosis protein RM 98.1 0.0011 2.4E-08 79.0 26.3 334 468-825 1741-2141(2235)
95 TIGR02270 conserved hypothetic 98.1 0.0004 8.7E-09 79.4 22.5 241 411-745 53-296 (410)
96 KOG0213 Splicing factor 3b, su 98.1 0.0024 5.2E-08 74.0 27.9 261 536-847 801-1069(1172)
97 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0023 4.9E-08 72.5 27.1 329 352-698 5-363 (371)
98 KOG1062 Vesicle coat complex A 98.0 0.0039 8.6E-08 73.5 29.1 406 334-845 111-546 (866)
99 KOG4646 Uncharacterized conser 98.0 7.3E-05 1.6E-09 68.7 11.4 123 451-573 15-139 (173)
100 PF00514 Arm: Armadillo/beta-c 98.0 1.1E-05 2.3E-10 60.1 4.7 41 523-563 1-41 (41)
101 KOG1060 Vesicle coat complex A 97.9 0.0021 4.6E-08 75.2 24.2 419 416-982 39-496 (968)
102 PF05536 Neurochondrin: Neuroc 97.9 0.0079 1.7E-07 71.8 29.8 229 331-563 6-261 (543)
103 PF00514 Arm: Armadillo/beta-c 97.9 2.2E-05 4.7E-10 58.5 4.7 41 803-843 1-41 (41)
104 KOG2660 Locus-specific chromos 97.9 6.8E-06 1.5E-10 86.8 2.5 65 258-323 13-82 (331)
105 KOG2973 Uncharacterized conser 97.9 0.00071 1.5E-08 71.2 17.1 257 454-728 5-297 (353)
106 PF12678 zf-rbx1: RING-H2 zinc 97.8 1.3E-05 2.7E-10 67.9 3.0 40 262-302 21-73 (73)
107 KOG4646 Uncharacterized conser 97.8 0.00017 3.6E-09 66.4 10.1 127 412-543 16-146 (173)
108 KOG3678 SARM protein (with ste 97.8 0.00037 8.1E-09 76.4 14.6 275 663-980 174-450 (832)
109 COG5181 HSH155 U2 snRNP splice 97.8 0.028 6.1E-07 64.3 29.3 161 576-744 543-716 (975)
110 KOG0212 Uncharacterized conser 97.7 0.0016 3.5E-08 73.6 18.8 334 370-728 83-428 (675)
111 COG5215 KAP95 Karyopherin (imp 97.7 0.15 3.2E-06 58.2 38.6 339 376-746 99-480 (858)
112 KOG1789 Endocytosis protein RM 97.7 0.0014 3.1E-08 78.1 18.6 360 346-728 1741-2143(2235)
113 KOG4159 Predicted E3 ubiquitin 97.7 2.4E-05 5.3E-10 87.4 3.0 71 256-327 80-155 (398)
114 KOG0297 TNF receptor-associate 97.6 2.3E-05 4.9E-10 89.3 2.5 67 257-324 18-86 (391)
115 PF14664 RICTOR_N: Rapamycin-i 97.6 0.011 2.4E-07 67.0 23.7 278 629-983 27-365 (371)
116 PF10165 Ric8: Guanine nucleot 97.6 0.0045 9.8E-08 72.3 21.0 267 430-698 1-336 (446)
117 COG1413 FOG: HEAT repeat [Ener 97.6 0.006 1.3E-07 69.1 21.6 165 627-844 43-210 (335)
118 COG5215 KAP95 Karyopherin (imp 97.6 0.14 3E-06 58.5 30.3 436 421-985 15-482 (858)
119 COG5222 Uncharacterized conser 97.5 7.5E-05 1.6E-09 76.6 4.0 67 261-327 275-343 (427)
120 COG1413 FOG: HEAT repeat [Ener 97.5 0.0051 1.1E-07 69.7 19.4 205 452-729 43-258 (335)
121 KOG1242 Protein containing ada 97.5 0.039 8.5E-07 64.0 25.9 249 452-728 96-346 (569)
122 KOG1060 Vesicle coat complex A 97.4 0.2 4.3E-06 59.5 30.7 207 454-698 37-245 (968)
123 PF12861 zf-Apc11: Anaphase-pr 97.4 0.00014 3.1E-09 61.8 3.9 48 260-307 32-83 (85)
124 KOG1059 Vesicle coat complex A 97.4 0.069 1.5E-06 62.6 26.3 214 415-658 147-367 (877)
125 KOG0212 Uncharacterized conser 97.4 0.0077 1.7E-07 68.3 18.2 267 369-656 165-444 (675)
126 KOG0211 Protein phosphatase 2A 97.4 0.15 3.2E-06 62.5 30.0 528 372-1019 122-663 (759)
127 KOG0824 Predicted E3 ubiquitin 97.4 7.7E-05 1.7E-09 77.6 1.8 49 260-308 7-55 (324)
128 PF13646 HEAT_2: HEAT repeats; 97.3 0.00057 1.2E-08 60.5 7.1 86 454-559 1-88 (88)
129 KOG1813 Predicted E3 ubiquitin 97.3 7.5E-05 1.6E-09 77.5 1.3 57 260-318 241-297 (313)
130 KOG1242 Protein containing ada 97.3 0.1 2.3E-06 60.6 26.5 314 372-728 135-466 (569)
131 PF05659 RPW8: Arabidopsis bro 97.3 0.004 8.7E-08 60.4 12.9 109 13-132 13-122 (147)
132 PF13646 HEAT_2: HEAT repeats; 97.3 0.00053 1.1E-08 60.7 6.2 87 495-603 1-88 (88)
133 PF10165 Ric8: Guanine nucleot 97.2 0.011 2.4E-07 69.0 18.0 281 350-658 1-339 (446)
134 KOG0802 E3 ubiquitin ligase [P 97.2 0.00017 3.7E-09 86.4 3.0 48 259-307 290-342 (543)
135 KOG4628 Predicted E3 ubiquitin 97.2 0.00019 4.1E-09 78.1 2.5 47 261-307 230-279 (348)
136 COG5152 Uncharacterized conser 97.1 0.00016 3.4E-09 70.0 1.3 45 260-305 196-240 (259)
137 KOG0211 Protein phosphatase 2A 97.1 0.92 2E-05 55.7 33.0 502 373-986 161-668 (759)
138 KOG1061 Vesicle coat complex A 97.1 0.061 1.3E-06 63.9 22.0 346 451-847 48-419 (734)
139 smart00185 ARM Armadillo/beta- 97.1 0.0011 2.4E-08 49.1 5.1 40 524-563 2-41 (41)
140 KOG2734 Uncharacterized conser 97.1 0.15 3.3E-06 56.6 23.0 231 353-586 107-371 (536)
141 KOG1824 TATA-binding protein-i 97.0 1.4 3.1E-05 53.6 54.3 297 425-769 585-902 (1233)
142 KOG1002 Nucleotide excision re 97.0 0.0016 3.4E-08 72.3 7.1 53 256-308 532-588 (791)
143 COG5540 RING-finger-containing 96.9 0.00044 9.5E-09 71.7 2.3 46 261-306 324-372 (374)
144 KOG2042 Ubiquitin fusion degra 96.9 0.001 2.2E-08 80.9 5.0 72 255-327 865-937 (943)
145 COG5240 SEC21 Vesicle coat com 96.8 1.1 2.4E-05 51.5 27.9 241 376-658 70-334 (898)
146 KOG2879 Predicted E3 ubiquitin 96.8 0.0007 1.5E-08 69.6 2.7 48 259-306 238-287 (298)
147 smart00185 ARM Armadillo/beta- 96.8 0.0024 5.2E-08 47.2 5.0 37 806-842 4-40 (41)
148 COG5240 SEC21 Vesicle coat com 96.8 1.5 3.2E-05 50.5 30.7 453 454-1019 67-554 (898)
149 COG5243 HRD1 HRD ubiquitin lig 96.8 0.00083 1.8E-08 71.5 3.0 47 259-306 286-345 (491)
150 COG5113 UFD2 Ubiquitin fusion 96.7 0.0019 4.1E-08 73.4 5.4 98 226-326 822-920 (929)
151 KOG2259 Uncharacterized conser 96.6 0.015 3.2E-07 67.2 11.7 267 628-979 199-472 (823)
152 PF12348 CLASP_N: CLASP N term 96.6 0.032 7E-07 59.3 13.9 176 383-564 20-207 (228)
153 COG5369 Uncharacterized conser 96.6 0.049 1.1E-06 61.6 14.9 194 471-667 408-605 (743)
154 KOG2734 Uncharacterized conser 96.5 1.7 3.6E-05 48.8 25.6 232 394-636 108-370 (536)
155 KOG0804 Cytoplasmic Zn-finger 96.4 0.0014 3.1E-08 72.0 2.0 47 257-306 172-222 (493)
156 PF12460 MMS19_C: RNAPII trans 96.4 0.45 9.7E-06 55.5 22.9 370 536-984 1-396 (415)
157 PF12348 CLASP_N: CLASP N term 96.4 0.022 4.8E-07 60.6 11.2 179 503-698 17-205 (228)
158 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0053 1.2E-07 48.9 4.7 55 507-561 1-55 (55)
159 KOG1517 Guanine nucleotide bin 96.4 0.041 9E-07 66.7 13.9 229 686-981 486-731 (1387)
160 PF05004 IFRD: Interferon-rela 96.4 0.19 4.1E-06 55.8 18.3 192 497-698 47-256 (309)
161 COG5231 VMA13 Vacuolar H+-ATPa 96.4 0.17 3.8E-06 53.8 16.6 238 459-698 156-427 (432)
162 KOG1077 Vesicle coat complex A 96.4 1.9 4.1E-05 51.0 26.2 340 376-759 116-501 (938)
163 KOG1943 Beta-tubulin folding c 96.3 3 6.5E-05 51.9 28.8 346 451-844 340-706 (1133)
164 KOG2259 Uncharacterized conser 96.3 0.16 3.5E-06 59.1 17.0 268 452-749 198-479 (823)
165 KOG4172 Predicted E3 ubiquitin 96.2 0.0011 2.5E-08 50.0 0.0 47 260-306 7-54 (62)
166 KOG3036 Protein involved in ce 96.2 1.9 4.1E-05 44.7 22.5 241 414-698 28-290 (293)
167 KOG0567 HEAT repeat-containing 96.2 0.34 7.4E-06 50.6 17.4 225 451-740 35-275 (289)
168 PF04641 Rtf2: Rtf2 RING-finge 96.2 0.0043 9.4E-08 66.9 4.1 54 258-313 111-168 (260)
169 KOG1943 Beta-tubulin folding c 96.1 3 6.6E-05 51.8 27.7 472 333-844 344-882 (1133)
170 KOG3039 Uncharacterized conser 96.1 0.0036 7.8E-08 63.1 2.7 53 259-312 220-276 (303)
171 COG5231 VMA13 Vacuolar H+-ATPa 96.1 0.53 1.1E-05 50.3 18.4 255 377-655 155-427 (432)
172 PF13513 HEAT_EZ: HEAT-like re 96.0 0.018 4E-07 45.8 6.1 55 641-697 1-55 (55)
173 KOG1061 Vesicle coat complex A 96.0 0.37 8.1E-06 57.5 18.9 327 372-745 122-453 (734)
174 PF04078 Rcd1: Cell differenti 96.0 0.69 1.5E-05 48.8 18.8 211 441-698 27-261 (262)
175 KOG0915 Uncharacterized conser 96.0 3.4 7.4E-05 53.2 27.7 426 375-845 822-1308(1702)
176 KOG4367 Predicted Zn-finger pr 96.0 0.003 6.6E-08 68.4 1.5 34 259-292 3-36 (699)
177 COG5181 HSH155 U2 snRNP splice 95.8 0.58 1.3E-05 54.1 18.7 294 372-698 605-945 (975)
178 KOG0826 Predicted E3 ubiquitin 95.8 0.0079 1.7E-07 63.7 3.6 52 254-306 294-346 (357)
179 KOG1517 Guanine nucleotide bin 95.7 0.25 5.5E-06 60.3 16.2 208 361-570 502-739 (1387)
180 KOG1240 Protein kinase contain 95.7 0.29 6.4E-06 60.8 16.6 301 630-990 425-733 (1431)
181 KOG1077 Vesicle coat complex A 95.7 6.7 0.00015 46.7 29.0 282 334-649 115-426 (938)
182 PF09759 Atx10homo_assoc: Spin 95.6 0.051 1.1E-06 48.9 7.5 66 509-574 2-70 (102)
183 KOG4535 HEAT and armadillo rep 95.6 0.47 1E-05 53.3 16.4 106 920-1025 496-608 (728)
184 KOG1078 Vesicle coat complex C 95.6 7.8 0.00017 46.8 29.2 285 628-981 246-531 (865)
185 KOG1058 Vesicle coat complex C 95.6 1 2.2E-05 53.5 19.7 398 371-844 134-567 (948)
186 PF11841 DUF3361: Domain of un 95.6 0.16 3.4E-06 49.6 11.3 122 529-658 6-133 (160)
187 KOG3800 Predicted E3 ubiquitin 95.5 0.011 2.4E-07 61.8 3.6 50 262-311 2-56 (300)
188 KOG4692 Predicted E3 ubiquitin 95.5 0.016 3.5E-07 61.5 4.8 48 258-306 420-467 (489)
189 KOG0828 Predicted E3 ubiquitin 95.5 0.0067 1.5E-07 67.2 1.9 50 257-306 568-634 (636)
190 PF11841 DUF3361: Domain of un 95.4 0.34 7.4E-06 47.3 12.9 120 569-698 5-130 (160)
191 PF09759 Atx10homo_assoc: Spin 95.3 0.085 1.8E-06 47.5 8.0 63 348-410 4-70 (102)
192 KOG1645 RING-finger-containing 95.3 0.0086 1.9E-07 65.1 1.9 61 259-319 3-69 (463)
193 PF13764 E3_UbLigase_R4: E3 ub 95.2 2 4.3E-05 53.3 21.9 243 451-698 116-405 (802)
194 PF04063 DUF383: Domain of unk 95.2 0.098 2.1E-06 53.3 9.2 123 464-586 7-157 (192)
195 KOG0827 Predicted E3 ubiquitin 95.2 0.15 3.3E-06 55.4 10.7 53 259-311 3-61 (465)
196 KOG4535 HEAT and armadillo rep 95.1 4.4 9.6E-05 45.9 21.9 225 731-1021 406-654 (728)
197 COG5369 Uncharacterized conser 95.1 0.43 9.3E-06 54.4 14.2 133 431-564 410-546 (743)
198 KOG1058 Vesicle coat complex C 95.0 1.2 2.7E-05 52.8 18.2 297 461-828 108-410 (948)
199 PF11793 FANCL_C: FANCL C-term 94.9 0.0074 1.6E-07 50.6 0.2 48 260-307 2-67 (70)
200 KOG1734 Predicted RING-contain 94.8 0.011 2.5E-07 60.5 1.1 55 259-313 223-288 (328)
201 smart00744 RINGv The RING-vari 94.8 0.032 7E-07 43.0 3.3 41 262-302 1-49 (49)
202 KOG2114 Vacuolar assembly/sort 94.7 0.3 6.5E-06 58.6 12.5 41 259-303 839-880 (933)
203 PF11698 V-ATPase_H_C: V-ATPas 94.7 0.063 1.4E-06 49.6 5.6 73 908-983 43-116 (119)
204 KOG1078 Vesicle coat complex C 94.7 8.3 0.00018 46.5 23.9 125 383-523 185-312 (865)
205 KOG1785 Tyrosine kinase negati 94.6 0.018 3.9E-07 62.1 1.9 49 261-309 370-419 (563)
206 PF08569 Mo25: Mo25-like; Int 94.6 8.8 0.00019 43.0 23.1 209 451-667 75-297 (335)
207 KOG1788 Uncharacterized conser 94.4 9.7 0.00021 47.0 23.5 477 453-984 467-984 (2799)
208 KOG1039 Predicted E3 ubiquitin 94.4 0.022 4.9E-07 62.7 2.2 50 258-307 159-222 (344)
209 PF12460 MMS19_C: RNAPII trans 94.3 13 0.00029 43.3 25.2 192 494-699 190-394 (415)
210 KOG0289 mRNA splicing factor [ 94.3 0.026 5.7E-07 62.0 2.5 51 261-312 1-52 (506)
211 KOG0567 HEAT repeat-containing 94.2 8.7 0.00019 40.6 20.3 239 495-843 38-280 (289)
212 KOG3039 Uncharacterized conser 94.1 0.032 6.9E-07 56.5 2.5 37 256-292 39-75 (303)
213 COG5194 APC11 Component of SCF 94.1 0.051 1.1E-06 45.0 3.1 45 261-306 32-81 (88)
214 KOG4265 Predicted E3 ubiquitin 94.0 0.03 6.5E-07 60.7 2.2 47 260-307 290-337 (349)
215 PF14570 zf-RING_4: RING/Ubox 93.9 0.045 9.7E-07 41.5 2.4 43 263-305 1-47 (48)
216 KOG0825 PHD Zn-finger protein 93.9 0.014 3.1E-07 68.0 -0.4 50 258-308 121-173 (1134)
217 KOG1001 Helicase-like transcri 93.9 0.022 4.8E-07 69.1 1.1 51 261-312 455-506 (674)
218 PF08569 Mo25: Mo25-like; Int 93.8 3 6.5E-05 46.7 17.4 198 367-565 72-285 (335)
219 KOG1248 Uncharacterized conser 93.7 25 0.00055 44.7 26.3 220 463-698 665-897 (1176)
220 KOG0915 Uncharacterized conser 93.7 28 0.0006 45.5 26.9 174 373-550 1000-1188(1702)
221 PF02891 zf-MIZ: MIZ/SP-RING z 93.7 0.064 1.4E-06 41.6 2.9 45 260-304 2-50 (50)
222 KOG3036 Protein involved in ce 93.7 1 2.2E-05 46.6 12.2 144 427-572 96-256 (293)
223 KOG1493 Anaphase-promoting com 93.5 0.036 7.9E-07 45.4 1.4 48 259-306 30-81 (84)
224 KOG1240 Protein kinase contain 93.5 1.7 3.6E-05 54.5 15.6 253 425-699 438-725 (1431)
225 PF02985 HEAT: HEAT repeat; I 93.3 0.11 2.3E-06 35.9 3.3 28 816-843 2-29 (31)
226 COG5175 MOT2 Transcriptional r 93.3 0.054 1.2E-06 57.3 2.5 51 259-310 14-68 (480)
227 PF14447 Prok-RING_4: Prokaryo 93.1 0.038 8.1E-07 42.8 0.9 48 259-309 6-53 (55)
228 PF12755 Vac14_Fab1_bd: Vacuol 93.1 0.27 5.9E-06 44.2 6.4 68 909-982 28-96 (97)
229 PF04078 Rcd1: Cell differenti 93.0 2.2 4.8E-05 45.1 13.9 190 383-573 8-228 (262)
230 KOG1571 Predicted E3 ubiquitin 92.8 0.11 2.4E-06 56.5 4.2 47 256-306 301-347 (355)
231 COG5219 Uncharacterized conser 92.7 0.045 9.8E-07 65.3 1.1 49 258-306 1467-1523(1525)
232 KOG2817 Predicted E3 ubiquitin 92.6 0.08 1.7E-06 58.2 2.8 46 259-304 333-383 (394)
233 COG5096 Vesicle coat complex, 92.6 1.9 4.1E-05 52.7 14.4 168 461-657 28-196 (757)
234 KOG4185 Predicted E3 ubiquitin 92.1 0.095 2.1E-06 58.1 2.8 64 260-323 3-77 (296)
235 KOG4275 Predicted E3 ubiquitin 91.9 0.027 5.8E-07 58.6 -1.7 42 260-306 300-342 (350)
236 PF10367 Vps39_2: Vacuolar sor 91.6 0.29 6.3E-06 45.1 5.0 33 256-288 74-108 (109)
237 PF05004 IFRD: Interferon-rela 91.6 6.3 0.00014 43.8 16.3 202 629-844 45-258 (309)
238 KOG4151 Myosin assembly protei 91.4 0.8 1.7E-05 55.1 9.4 254 490-766 466-720 (748)
239 KOG2999 Regulator of Rac1, req 91.4 4.2 9.1E-05 46.9 14.4 153 536-699 85-242 (713)
240 KOG4151 Myosin assembly protei 91.4 2.8 6.1E-05 50.6 13.9 241 440-695 493-737 (748)
241 KOG3113 Uncharacterized conser 91.2 0.22 4.7E-06 51.0 3.9 52 258-312 109-164 (293)
242 PF08045 CDC14: Cell division 91.1 2.3 5E-05 45.2 11.5 99 510-608 108-208 (257)
243 PF12755 Vac14_Fab1_bd: Vacuol 91.0 0.73 1.6E-05 41.4 6.7 88 470-560 4-93 (97)
244 KOG2274 Predicted importin 9 [ 91.0 17 0.00038 44.7 19.7 221 463-698 461-688 (1005)
245 PF02985 HEAT: HEAT repeat; I 90.9 0.41 8.8E-06 32.9 3.9 29 536-564 2-30 (31)
246 COG5096 Vesicle coat complex, 90.8 4.9 0.00011 49.3 15.3 167 502-699 28-195 (757)
247 PF04063 DUF383: Domain of unk 90.8 1.3 2.8E-05 45.3 9.1 116 386-502 11-156 (192)
248 PF08045 CDC14: Cell division 90.7 1.7 3.8E-05 46.2 10.2 93 343-435 104-203 (257)
249 PF11698 V-ATPase_H_C: V-ATPas 90.4 0.54 1.2E-05 43.6 5.3 70 628-698 44-114 (119)
250 KOG1967 DNA repair/transcripti 90.3 3.9 8.4E-05 50.1 13.6 246 468-739 749-1018(1030)
251 KOG4464 Signaling protein RIC- 90.0 14 0.0003 41.4 16.2 151 414-565 47-233 (532)
252 KOG2611 Neurochondrin/leucine- 89.8 22 0.00048 40.6 17.9 183 457-656 16-225 (698)
253 KOG0414 Chromosome condensatio 89.7 71 0.0015 40.9 27.9 126 784-980 936-1062(1251)
254 PF13764 E3_UbLigase_R4: E3 ub 89.6 9.8 0.00021 47.5 16.9 138 529-667 112-269 (802)
255 COG5220 TFB3 Cdk activating ki 89.6 0.18 3.8E-06 51.0 1.6 51 259-309 9-67 (314)
256 KOG3161 Predicted E3 ubiquitin 89.6 0.16 3.5E-06 58.5 1.5 38 259-299 10-51 (861)
257 KOG2979 Protein involved in DN 89.3 0.18 3.9E-06 52.2 1.5 46 259-304 175-222 (262)
258 KOG2999 Regulator of Rac1, req 89.3 5.5 0.00012 46.0 13.1 154 496-657 86-243 (713)
259 KOG2274 Predicted importin 9 [ 89.1 29 0.00063 42.9 19.4 194 454-658 492-691 (1005)
260 KOG1248 Uncharacterized conser 88.5 13 0.00029 47.1 16.7 209 383-607 667-898 (1176)
261 PF05290 Baculo_IE-1: Baculovi 88.4 0.41 8.9E-06 44.3 3.0 50 259-308 79-134 (140)
262 PF12717 Cnd1: non-SMC mitotic 88.0 1.7 3.7E-05 44.1 7.6 66 910-983 27-93 (178)
263 PF11701 UNC45-central: Myosin 87.9 0.92 2E-05 44.9 5.5 144 454-604 5-156 (157)
264 PF11701 UNC45-central: Myosin 87.9 6.6 0.00014 38.9 11.5 132 383-520 18-157 (157)
265 PF12719 Cnd3: Nuclear condens 86.8 14 0.00031 40.9 14.7 169 412-589 26-210 (298)
266 PF06371 Drf_GBD: Diaphanous G 86.3 2.1 4.6E-05 43.6 7.4 79 484-562 98-186 (187)
267 KOG0298 DEAD box-containing he 85.9 0.24 5.2E-06 62.1 0.1 45 258-303 1151-1196(1394)
268 PF14668 RICTOR_V: Rapamycin-i 85.9 3 6.5E-05 35.2 6.6 64 511-574 5-69 (73)
269 KOG2034 Vacuolar sorting prote 85.7 5.6 0.00012 48.7 11.1 35 258-292 815-851 (911)
270 PF12717 Cnd1: non-SMC mitotic 85.2 3.5 7.5E-05 41.8 8.2 93 465-564 1-93 (178)
271 PF06371 Drf_GBD: Diaphanous G 85.1 5.8 0.00013 40.4 10.0 78 403-480 98-186 (187)
272 KOG1967 DNA repair/transcripti 84.7 6.9 0.00015 48.0 11.2 184 374-558 815-1019(1030)
273 KOG3665 ZYG-1-like serine/thre 83.9 85 0.0018 39.1 20.6 190 475-694 494-692 (699)
274 KOG3002 Zn finger protein [Gen 83.4 0.81 1.8E-05 49.9 2.7 60 257-323 45-105 (299)
275 KOG1814 Predicted E3 ubiquitin 83.2 0.98 2.1E-05 50.0 3.2 60 259-322 183-252 (445)
276 KOG1941 Acetylcholine receptor 82.7 0.62 1.4E-05 50.7 1.5 45 259-303 364-413 (518)
277 COG5109 Uncharacterized conser 82.5 0.85 1.8E-05 48.3 2.3 45 259-303 335-384 (396)
278 KOG4739 Uncharacterized protei 81.6 0.62 1.3E-05 48.2 1.0 58 261-323 4-63 (233)
279 PF07814 WAPL: Wings apart-lik 81.6 39 0.00084 38.6 15.6 92 453-544 22-116 (361)
280 KOG2062 26S proteasome regulat 81.6 1.1E+02 0.0023 37.4 18.8 133 669-841 518-651 (929)
281 PF14668 RICTOR_V: Rapamycin-i 81.1 4.4 9.5E-05 34.2 5.7 66 469-534 4-70 (73)
282 KOG1812 Predicted E3 ubiquitin 80.8 1.4 3E-05 50.4 3.5 69 259-328 145-224 (384)
283 KOG2930 SCF ubiquitin ligase, 80.7 1.1 2.4E-05 39.4 2.0 27 277-304 80-106 (114)
284 KOG1832 HIV-1 Vpr-binding prot 80.5 34 0.00073 42.0 14.5 314 383-700 366-774 (1516)
285 KOG4464 Signaling protein RIC- 80.5 1.1E+02 0.0023 34.7 17.6 83 342-424 109-199 (532)
286 PF12719 Cnd3: Nuclear condens 80.5 61 0.0013 35.9 16.4 108 452-563 26-143 (298)
287 PRK14707 hypothetical protein; 80.5 2.5E+02 0.0054 38.8 42.4 389 355-768 190-593 (2710)
288 PF06025 DUF913: Domain of Unk 80.4 26 0.00056 40.2 13.6 134 453-588 107-256 (379)
289 COG5209 RCD1 Uncharacterized p 80.3 6.5 0.00014 40.2 7.5 142 428-571 118-276 (315)
290 KOG2025 Chromosome condensatio 79.8 64 0.0014 39.0 16.2 106 628-743 86-191 (892)
291 KOG2025 Chromosome condensatio 79.7 46 0.00099 40.1 15.1 103 534-651 85-188 (892)
292 KOG3665 ZYG-1-like serine/thre 79.6 1.7E+02 0.0038 36.5 23.1 181 557-768 494-677 (699)
293 KOG2611 Neurochondrin/leucine- 79.5 76 0.0017 36.5 16.1 131 498-639 16-164 (698)
294 KOG1940 Zn-finger protein [Gen 79.0 1.3 2.8E-05 47.4 2.3 44 259-303 157-204 (276)
295 PF12530 DUF3730: Protein of u 78.9 94 0.002 33.0 16.8 175 495-698 2-188 (234)
296 KOG0414 Chromosome condensatio 78.6 27 0.00059 44.4 13.5 161 535-728 920-1084(1251)
297 PF08324 PUL: PUL domain; Int 78.0 43 0.00093 36.3 14.1 175 425-600 78-267 (268)
298 COG5627 MMS21 DNA repair prote 76.8 1.4 3E-05 44.9 1.7 52 260-311 189-244 (275)
299 PF05605 zf-Di19: Drought indu 76.7 1.3 2.9E-05 34.9 1.3 38 259-303 1-39 (54)
300 PF01347 Vitellogenin_N: Lipop 76.7 60 0.0013 40.1 16.5 234 453-734 348-611 (618)
301 KOG2062 26S proteasome regulat 76.6 95 0.0021 37.8 16.5 157 537-729 521-679 (929)
302 KOG4362 Transcriptional regula 76.4 1.1 2.4E-05 53.4 1.1 63 259-321 20-84 (684)
303 COG5209 RCD1 Uncharacterized p 76.0 36 0.00078 35.0 11.3 103 467-569 115-224 (315)
304 PF14569 zf-UDP: Zinc-binding 76.0 2.9 6.2E-05 35.0 3.0 48 259-306 8-62 (80)
305 PF12031 DUF3518: Domain of un 75.9 5.1 0.00011 41.7 5.5 80 427-506 141-229 (257)
306 smart00638 LPD_N Lipoprotein N 75.5 1.3E+02 0.0028 36.8 18.8 232 451-733 310-566 (574)
307 KOG1832 HIV-1 Vpr-binding prot 75.1 1.1E+02 0.0023 38.0 16.4 396 388-816 327-787 (1516)
308 PF06025 DUF913: Domain of Unk 74.8 60 0.0013 37.2 14.4 102 715-827 106-209 (379)
309 PF14500 MMS19_N: Dos2-interac 74.8 97 0.0021 33.5 15.3 216 335-563 4-237 (262)
310 PRK14707 hypothetical protein; 74.7 3.5E+02 0.0077 37.5 41.5 340 369-729 245-597 (2710)
311 COG3813 Uncharacterized protei 73.7 2.5 5.5E-05 34.4 2.1 42 272-316 21-62 (84)
312 PF05918 API5: Apoptosis inhib 73.4 23 0.00049 42.3 10.7 121 504-652 33-158 (556)
313 KOG4653 Uncharacterized conser 73.4 40 0.00088 41.5 12.7 187 499-705 733-923 (982)
314 PF10363 DUF2435: Protein of u 72.8 9 0.00019 34.1 5.6 85 629-727 5-89 (92)
315 COG5236 Uncharacterized conser 72.0 4.3 9.3E-05 43.7 3.9 101 258-366 59-163 (493)
316 PHA03096 p28-like protein; Pro 71.6 2.4 5.1E-05 46.0 2.0 44 261-304 179-232 (284)
317 PF05918 API5: Apoptosis inhib 71.5 39 0.00085 40.3 12.1 120 785-978 36-158 (556)
318 PF08746 zf-RING-like: RING-li 71.4 4.8 0.0001 30.1 3.0 39 263-301 1-43 (43)
319 KOG1020 Sister chromatid cohes 71.1 3.6E+02 0.0078 36.0 32.4 136 371-520 816-958 (1692)
320 KOG0825 PHD Zn-finger protein 70.9 3.8 8.3E-05 48.8 3.6 50 256-305 92-153 (1134)
321 PF10272 Tmpp129: Putative tra 69.9 8.6 0.00019 43.0 5.9 34 277-310 305-355 (358)
322 PHA02825 LAP/PHD finger-like p 69.6 5.3 0.00011 38.7 3.6 48 259-307 7-60 (162)
323 KOG2032 Uncharacterized conser 69.5 49 0.0011 38.2 11.7 128 383-511 271-405 (533)
324 KOG0301 Phospholipase A2-activ 69.0 1.1E+02 0.0023 36.9 14.5 135 453-593 590-733 (745)
325 KOG3970 Predicted E3 ubiquitin 68.6 7.1 0.00015 39.5 4.4 45 261-305 51-104 (299)
326 KOG3899 Uncharacterized conser 68.2 3 6.5E-05 43.8 1.8 32 278-309 325-368 (381)
327 PF07814 WAPL: Wings apart-lik 68.2 1.3E+02 0.0028 34.3 15.3 89 497-586 25-116 (361)
328 KOG0883 Cyclophilin type, U bo 68.0 3 6.6E-05 45.6 1.9 59 259-318 39-97 (518)
329 PF12031 DUF3518: Domain of un 67.6 16 0.00036 38.1 6.9 81 508-588 139-228 (257)
330 PF08324 PUL: PUL domain; Int 64.7 74 0.0016 34.4 12.1 186 498-690 68-265 (268)
331 cd03569 VHS_Hrs_Vps27p VHS dom 64.3 25 0.00054 34.1 7.3 69 331-399 42-114 (142)
332 PF12906 RINGv: RING-variant d 64.1 3.8 8.2E-05 31.3 1.2 39 263-301 1-47 (47)
333 smart00288 VHS Domain present 63.4 25 0.00055 33.6 7.1 70 330-399 37-111 (133)
334 KOG2956 CLIP-associating prote 63.0 2.1E+02 0.0045 33.2 14.9 143 535-698 330-476 (516)
335 KOG4653 Uncharacterized conser 62.5 1.5E+02 0.0032 37.0 14.3 172 425-609 742-920 (982)
336 COG5098 Chromosome condensatio 62.4 47 0.001 39.8 10.0 130 505-658 908-1039(1128)
337 smart00638 LPD_N Lipoprotein N 62.1 2.4E+02 0.0053 34.4 17.3 169 451-653 356-542 (574)
338 PF03854 zf-P11: P-11 zinc fin 61.5 3.6 7.7E-05 30.9 0.6 32 275-307 15-47 (50)
339 PF01347 Vitellogenin_N: Lipop 61.3 97 0.0021 38.3 13.7 166 411-600 394-582 (618)
340 PF05883 Baculo_RING: Baculovi 61.3 6.8 0.00015 37.0 2.6 51 260-311 26-85 (134)
341 PF12530 DUF3730: Protein of u 61.3 2.2E+02 0.0049 30.1 18.0 137 454-607 2-151 (234)
342 PF12252 SidE: Dot/Icm substra 61.2 1.2E+02 0.0027 38.2 13.5 142 82-238 1014-1172(1439)
343 KOG1566 Conserved protein Mo25 61.1 2.6E+02 0.0056 30.8 16.7 201 407-610 74-289 (342)
344 PF07800 DUF1644: Protein of u 60.8 3.3 7.2E-05 40.0 0.5 21 259-279 1-21 (162)
345 cd03568 VHS_STAM VHS domain fa 60.5 33 0.00071 33.4 7.3 69 331-399 38-110 (144)
346 KOG1991 Nuclear transport rece 60.4 4.6E+02 0.0099 33.4 26.1 157 425-587 387-558 (1010)
347 COG5218 YCG1 Chromosome conden 59.3 30 0.00066 40.6 7.7 105 451-565 90-198 (885)
348 PF14446 Prok-RING_1: Prokaryo 59.3 7.7 0.00017 30.4 2.1 31 259-289 4-38 (54)
349 COG5218 YCG1 Chromosome conden 58.8 63 0.0014 38.1 10.1 105 628-742 92-196 (885)
350 PF14225 MOR2-PAG1_C: Cell mor 58.8 2.7E+02 0.0058 30.2 17.5 153 509-684 78-242 (262)
351 KOG1820 Microtubule-associated 57.5 2E+02 0.0043 36.4 15.0 181 497-698 257-442 (815)
352 PHA02862 5L protein; Provision 57.2 8.9 0.00019 36.4 2.6 56 262-324 4-65 (156)
353 PF14353 CpXC: CpXC protein 56.7 7.2 0.00016 37.1 2.1 47 260-307 1-50 (128)
354 PF08167 RIX1: rRNA processing 56.1 60 0.0013 32.4 8.6 107 452-561 25-141 (165)
355 COG1579 Zn-ribbon protein, pos 56.0 2.8E+02 0.006 29.5 14.5 40 256-306 193-232 (239)
356 cd03567 VHS_GGA VHS domain fam 55.8 47 0.001 32.1 7.4 69 331-399 39-116 (139)
357 PRK06266 transcription initiat 55.4 20 0.00043 36.2 5.1 34 259-308 116-149 (178)
358 PF07191 zinc-ribbons_6: zinc- 54.9 1.4 3.1E-05 36.4 -2.6 42 260-307 1-42 (70)
359 PF11707 Npa1: Ribosome 60S bi 54.6 3.5E+02 0.0077 30.3 18.4 158 495-658 58-239 (330)
360 PF11707 Npa1: Ribosome 60S bi 54.0 3.6E+02 0.0079 30.2 19.3 202 536-744 58-302 (330)
361 PF06906 DUF1272: Protein of u 52.6 16 0.00034 28.7 2.8 32 274-308 23-54 (57)
362 TIGR00634 recN DNA repair prot 51.9 5.2E+02 0.011 31.5 19.4 77 40-124 181-263 (563)
363 COG5116 RPN2 26S proteasome re 51.7 93 0.002 36.6 9.9 132 673-843 519-650 (926)
364 PLN02189 cellulose synthase 51.5 9.3 0.0002 48.3 2.3 48 259-306 33-87 (1040)
365 KOG2137 Protein kinase [Signal 51.1 99 0.0021 37.6 10.5 132 451-588 388-520 (700)
366 KOG0396 Uncharacterized conser 50.6 11 0.00024 41.5 2.5 48 260-307 330-380 (389)
367 PF11791 Aconitase_B_N: Aconit 50.3 30 0.00065 33.5 5.0 26 536-561 96-121 (154)
368 KOG3268 Predicted E3 ubiquitin 50.0 12 0.00026 36.4 2.3 32 276-307 188-229 (234)
369 KOG1820 Microtubule-associated 49.9 2.5E+02 0.0054 35.5 14.2 186 537-743 256-441 (815)
370 KOG2032 Uncharacterized conser 49.8 4.9E+02 0.011 30.5 15.3 150 411-565 253-417 (533)
371 cd03572 ENTH_epsin_related ENT 49.6 68 0.0015 30.2 7.2 71 628-698 39-118 (122)
372 PF06844 DUF1244: Protein of u 48.8 10 0.00022 30.7 1.4 12 281-292 11-22 (68)
373 PF14225 MOR2-PAG1_C: Cell mor 48.5 3.8E+02 0.0083 28.9 14.7 174 576-769 60-239 (262)
374 KOG1815 Predicted E3 ubiquitin 48.3 14 0.00031 43.4 3.2 36 258-293 68-104 (444)
375 KOG4718 Non-SMC (structural ma 48.3 11 0.00023 38.2 1.7 48 259-307 180-228 (235)
376 PRK12495 hypothetical protein; 48.2 29 0.00062 35.7 4.7 45 203-269 7-51 (226)
377 PLN02436 cellulose synthase A 48.2 11 0.00024 47.7 2.2 48 259-306 35-89 (1094)
378 PLN02195 cellulose synthase A 47.6 12 0.00027 46.9 2.5 46 261-306 7-59 (977)
379 COG0497 RecN ATPase involved i 47.5 5.8E+02 0.013 30.7 19.6 76 39-122 176-255 (557)
380 PF14500 MMS19_N: Dos2-interac 47.4 4E+02 0.0087 28.8 13.8 129 508-656 97-237 (262)
381 COG5656 SXM1 Importin, protein 47.4 6.4E+02 0.014 31.2 17.0 276 451-745 407-711 (970)
382 KOG1991 Nuclear transport rece 47.1 7.3E+02 0.016 31.8 20.0 116 576-699 410-532 (1010)
383 KOG1428 Inhibitor of type V ad 46.6 23 0.00049 45.5 4.4 61 259-325 3485-3557(3738)
384 PF11864 DUF3384: Domain of un 46.5 5.6E+02 0.012 30.3 16.4 256 547-842 42-329 (464)
385 KOG2956 CLIP-associating prote 46.3 4.9E+02 0.011 30.3 14.3 173 643-844 303-478 (516)
386 cd03568 VHS_STAM VHS domain fa 46.2 61 0.0013 31.5 6.6 73 908-982 37-110 (144)
387 PF10497 zf-4CXXC_R1: Zinc-fin 45.5 19 0.0004 32.9 2.8 25 279-303 37-69 (105)
388 PF00790 VHS: VHS domain; Int 45.2 59 0.0013 31.4 6.4 69 331-399 43-118 (140)
389 PF11864 DUF3384: Domain of un 44.3 4.6E+02 0.0099 31.1 15.0 73 425-503 44-117 (464)
390 cd03561 VHS VHS domain family; 44.0 94 0.002 29.7 7.5 70 330-399 37-112 (133)
391 COG5116 RPN2 26S proteasome re 43.7 2.8E+02 0.006 32.9 12.0 152 499-684 522-676 (926)
392 cd03569 VHS_Hrs_Vps27p VHS dom 43.2 73 0.0016 30.9 6.7 74 908-983 41-115 (142)
393 cd03567 VHS_GGA VHS domain fam 42.8 77 0.0017 30.6 6.7 73 908-982 38-116 (139)
394 PF13251 DUF4042: Domain of un 42.7 3.8E+02 0.0082 27.2 13.9 130 535-698 40-173 (182)
395 PLN02638 cellulose synthase A 42.5 15 0.00033 46.6 2.3 48 259-306 16-70 (1079)
396 PF14726 RTTN_N: Rotatin, an a 41.9 1.1E+02 0.0024 27.5 7.0 67 491-557 28-94 (98)
397 PF10571 UPF0547: Uncharacteri 39.9 15 0.00032 24.2 0.9 8 262-269 2-9 (26)
398 COG2176 PolC DNA polymerase II 39.9 23 0.00049 45.2 3.1 41 256-308 910-952 (1444)
399 PLN02915 cellulose synthase A 39.4 18 0.00039 45.8 2.2 48 259-306 14-68 (1044)
400 PF08216 CTNNBL: Catenin-beta- 39.2 27 0.00058 31.9 2.7 43 469-511 63-105 (108)
401 PF10363 DUF2435: Protein of u 38.7 87 0.0019 27.8 5.9 68 497-565 7-74 (92)
402 COG5098 Chromosome condensatio 37.9 1.2E+02 0.0025 36.7 8.1 105 453-562 300-414 (1128)
403 PF08506 Cse1: Cse1; InterPro 37.6 6.8E+02 0.015 28.6 18.2 128 425-558 226-370 (370)
404 KOG3579 Predicted E3 ubiquitin 37.5 16 0.00035 38.5 1.2 37 257-293 265-305 (352)
405 KOG1020 Sister chromatid cohes 37.3 4.6E+02 0.0099 35.2 13.7 163 427-607 794-960 (1692)
406 cd03561 VHS VHS domain family; 37.1 1.6E+02 0.0034 28.1 7.9 73 535-608 38-113 (133)
407 KOG1100 Predicted E3 ubiquitin 37.0 17 0.00037 37.7 1.3 38 263-305 161-199 (207)
408 PF11791 Aconitase_B_N: Aconit 36.6 62 0.0013 31.4 4.8 30 991-1020 92-123 (154)
409 KOG0301 Phospholipase A2-activ 36.0 6.5E+02 0.014 30.7 13.8 155 343-503 557-726 (745)
410 KOG4231 Intracellular membrane 35.9 60 0.0013 37.5 5.3 61 543-605 337-397 (763)
411 KOG1243 Protein kinase [Genera 35.3 2.1E+02 0.0046 34.9 9.9 187 490-698 327-514 (690)
412 KOG1848 Uncharacterized conser 35.3 1E+03 0.022 31.8 16.1 96 494-590 929-1030(1610)
413 KOG2137 Protein kinase [Signal 35.2 1.9E+02 0.0041 35.4 9.5 132 533-684 388-522 (700)
414 PF08506 Cse1: Cse1; InterPro 34.8 3.1E+02 0.0068 31.3 11.1 140 547-694 224-370 (370)
415 PF06676 DUF1178: Protein of u 34.5 16 0.00034 35.5 0.5 33 277-314 9-52 (148)
416 KOG1788 Uncharacterized conser 34.1 1.2E+03 0.025 30.3 22.4 78 620-698 901-981 (2799)
417 cd00350 rubredoxin_like Rubred 33.8 27 0.00058 24.4 1.5 11 294-304 16-26 (33)
418 KOG2932 E3 ubiquitin ligase in 33.1 18 0.00039 38.6 0.7 43 260-305 90-133 (389)
419 PF12830 Nipped-B_C: Sister ch 33.0 71 0.0015 32.6 5.1 65 910-982 10-74 (187)
420 KOG4445 Uncharacterized conser 32.5 16 0.00034 39.0 0.2 49 259-307 114-187 (368)
421 smart00288 VHS Domain present 32.2 1.8E+02 0.0039 27.8 7.4 72 535-607 38-111 (133)
422 KOG2933 Uncharacterized conser 32.2 1.9E+02 0.0041 31.7 8.0 137 497-652 92-230 (334)
423 PF14726 RTTN_N: Rotatin, an a 32.1 2.6E+02 0.0056 25.2 7.7 67 451-517 29-95 (98)
424 KOG3799 Rab3 effector RIM1 and 31.9 1.1E+02 0.0023 28.7 5.3 39 257-307 62-101 (169)
425 PF04216 FdhE: Protein involve 31.8 9 0.0002 42.2 -1.8 46 258-304 170-220 (290)
426 PF10235 Cript: Microtubule-as 31.8 27 0.00058 30.7 1.5 38 260-307 44-81 (90)
427 PLN02400 cellulose synthase 31.8 22 0.00047 45.3 1.2 48 259-306 35-89 (1085)
428 PF08167 RIX1: rRNA processing 31.7 3.2E+02 0.0069 27.2 9.4 105 372-480 26-142 (165)
429 TIGR00373 conserved hypothetic 31.2 69 0.0015 31.7 4.5 34 259-308 108-141 (158)
430 cd03565 VHS_Tom1 VHS domain fa 31.1 1.9E+02 0.004 28.0 7.3 69 331-399 39-115 (141)
431 PF13240 zinc_ribbon_2: zinc-r 31.0 7 0.00015 24.9 -1.7 10 295-304 13-22 (23)
432 PF11865 DUF3385: Domain of un 30.6 2.8E+02 0.006 27.5 8.7 144 451-605 9-155 (160)
433 COG0068 HypF Hydrogenase matur 30.5 24 0.00052 42.6 1.2 53 255-307 96-185 (750)
434 PF00790 VHS: VHS domain; Int 30.3 1.5E+02 0.0033 28.5 6.6 75 908-984 42-120 (140)
435 PF13251 DUF4042: Domain of un 29.6 3.9E+02 0.0085 27.1 9.6 109 453-564 41-175 (182)
436 PF14357 DUF4404: Domain of un 29.5 2.2E+02 0.0048 24.9 6.8 71 117-191 5-78 (85)
437 PRK04023 DNA polymerase II lar 28.5 47 0.001 41.8 3.3 61 258-322 624-689 (1121)
438 KOG1243 Protein kinase [Genera 28.0 3.9E+02 0.0084 32.7 10.4 172 531-728 327-499 (690)
439 COG3492 Uncharacterized protei 27.4 34 0.00075 29.5 1.3 13 281-293 42-54 (104)
440 PF08216 CTNNBL: Catenin-beta- 27.3 62 0.0013 29.6 3.0 40 512-551 65-104 (108)
441 KOG1992 Nuclear export recepto 27.1 1.4E+03 0.029 28.9 20.9 159 670-843 498-668 (960)
442 PF09538 FYDLN_acid: Protein o 26.7 41 0.00089 30.9 1.8 15 294-308 25-39 (108)
443 KOG2462 C2H2-type Zn-finger pr 26.7 35 0.00075 36.4 1.5 47 258-308 159-228 (279)
444 PF06012 DUF908: Domain of Unk 26.7 2.3E+02 0.0051 31.8 8.3 64 509-572 238-306 (329)
445 PF09324 DUF1981: Domain of un 26.4 2.1E+02 0.0046 25.0 6.2 66 906-979 15-85 (86)
446 PF06685 DUF1186: Protein of u 26.2 8.3E+02 0.018 26.2 13.6 131 535-697 32-181 (249)
447 PF11865 DUF3385: Domain of un 26.1 2.3E+02 0.0051 28.0 7.2 138 413-561 11-155 (160)
448 PF12074 DUF3554: Domain of un 25.5 9E+02 0.02 27.1 12.9 215 469-698 4-234 (339)
449 PF12773 DZR: Double zinc ribb 25.4 45 0.00098 25.6 1.6 11 295-305 29-39 (50)
450 PF03130 HEAT_PBS: PBS lyase H 25.3 60 0.0013 21.4 2.0 13 924-936 1-13 (27)
451 KOG0827 Predicted E3 ubiquitin 25.2 72 0.0016 35.5 3.6 47 261-308 197-247 (465)
452 PF06416 DUF1076: Protein of u 25.2 55 0.0012 29.7 2.3 51 257-308 37-93 (113)
453 TIGR01562 FdhE formate dehydro 25.1 19 0.00042 39.6 -0.7 45 259-304 183-233 (305)
454 PF09723 Zn-ribbon_8: Zinc rib 24.9 14 0.00029 27.5 -1.3 25 277-303 10-34 (42)
455 PF14663 RasGEF_N_2: Rapamycin 24.8 1.7E+02 0.0037 27.1 5.7 40 535-574 9-48 (115)
456 PF14663 RasGEF_N_2: Rapamycin 24.7 2.5E+02 0.0055 26.0 6.7 39 453-491 9-47 (115)
457 smart00531 TFIIE Transcription 24.4 45 0.00097 32.6 1.8 38 259-308 98-136 (147)
458 PF10274 ParcG: Parkin co-regu 24.4 5.7E+02 0.012 26.0 9.5 72 494-566 39-112 (183)
459 TIGR01834 PHA_synth_III_E poly 24.3 1E+03 0.022 26.5 13.2 34 94-127 190-223 (320)
460 cd00729 rubredoxin_SM Rubredox 24.1 30 0.00064 24.4 0.3 10 295-304 18-27 (34)
461 PF04641 Rtf2: Rtf2 RING-finge 24.1 78 0.0017 34.2 3.7 37 259-295 33-70 (260)
462 PF07923 N1221: N1221-like pro 24.0 1.2E+02 0.0026 33.4 5.3 58 906-963 58-126 (293)
463 PF12830 Nipped-B_C: Sister ch 23.7 1.7E+02 0.0036 29.8 5.9 67 628-700 9-75 (187)
464 PRK11088 rrmA 23S rRNA methylt 23.4 41 0.0009 36.6 1.5 25 260-284 2-29 (272)
465 PF14631 FancD2: Fanconi anaem 23.3 2.1E+03 0.045 29.8 21.1 146 534-698 431-586 (1426)
466 KOG0972 Huntingtin interacting 23.3 4.6E+02 0.0099 28.3 8.7 21 73-93 199-219 (384)
467 COG1592 Rubrerythrin [Energy p 23.3 48 0.001 32.9 1.7 11 294-304 148-158 (166)
468 KOG2169 Zn-finger transcriptio 23.2 51 0.0011 40.6 2.3 61 259-321 305-371 (636)
469 COG4098 comFA Superfamily II D 23.0 31 0.00067 38.0 0.4 30 259-288 38-68 (441)
470 PRK00420 hypothetical protein; 22.9 42 0.00092 30.9 1.2 29 260-306 23-51 (112)
471 KOG4185 Predicted E3 ubiquitin 22.8 23 0.00051 39.1 -0.6 45 260-304 207-265 (296)
472 COG2888 Predicted Zn-ribbon RN 22.8 50 0.0011 26.4 1.3 33 259-303 26-58 (61)
473 PF15254 CCDC14: Coiled-coil d 22.1 6.2E+02 0.013 31.4 10.6 33 113-147 357-389 (861)
474 KOG0314 Predicted E3 ubiquitin 22.1 38 0.00082 39.0 0.8 65 254-320 213-281 (448)
475 PRK14892 putative transcriptio 21.6 88 0.0019 28.2 2.8 56 256-326 17-72 (99)
476 PRK03564 formate dehydrogenase 21.6 34 0.00073 37.7 0.3 44 259-303 186-234 (309)
477 KOG4713 Cyclin-dependent kinas 21.5 1.3E+02 0.0029 29.6 4.2 46 48-96 135-180 (189)
478 PF08427 DUF1741: Domain of un 21.5 9.9E+02 0.022 25.4 12.5 82 14-96 58-139 (237)
479 KOG3053 Uncharacterized conser 21.4 51 0.0011 34.6 1.5 48 258-305 18-81 (293)
480 PF13834 DUF4193: Domain of un 21.1 26 0.00056 31.2 -0.6 29 258-286 68-98 (99)
481 KOG2676 Uncharacterized conser 21.1 80 0.0017 34.9 2.9 60 351-410 377-440 (478)
482 COG5183 SSM4 Protein involved 21.0 71 0.0015 39.0 2.7 50 259-308 11-68 (1175)
483 KOG2068 MOT2 transcription fac 21.0 76 0.0016 34.9 2.8 45 261-306 250-298 (327)
484 COG1675 TFA1 Transcription ini 20.8 1.2E+02 0.0026 30.5 3.9 36 258-309 111-146 (176)
485 PF10521 DUF2454: Protein of u 20.8 6.5E+02 0.014 27.5 10.2 73 535-607 120-203 (282)
486 KOG1952 Transcription factor N 20.6 63 0.0014 39.8 2.3 46 259-304 190-245 (950)
487 PF13248 zf-ribbon_3: zinc-rib 20.6 19 0.00042 23.6 -1.1 10 295-304 16-25 (26)
488 COG3364 Zn-ribbon containing p 20.6 45 0.00097 29.7 0.8 24 276-304 6-29 (112)
489 PF01726 LexA_DNA_bind: LexA D 20.6 4.3E+02 0.0094 21.7 6.5 47 159-211 6-52 (65)
490 PF09986 DUF2225: Uncharacteri 20.3 30 0.00066 36.1 -0.4 52 259-310 4-63 (214)
491 KOG0006 E3 ubiquitin-protein l 20.2 61 0.0013 34.8 1.8 14 277-290 341-354 (446)
492 PF13811 DUF4186: Domain of un 20.1 55 0.0012 29.8 1.2 20 272-292 64-86 (111)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.3e-56 Score=559.18 Aligned_cols=658 Identities=18% Similarity=0.222 Sum_probs=508.2
Q ss_pred hHHHHHhhhcCC--ChHHHHHHHHHHHHhc-CChhhhHHHHh-hccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHH
Q 001690 331 RFQNAIIKINSD--DQSRRKSALEEMKNIM-ELPQYAEKAAK-AGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHK 405 (1028)
Q Consensus 331 ~i~~~~~~L~s~--~~~~~~~al~~L~~l~-~~~~~r~~i~~-~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k 405 (1028)
.+..++++|.++ +.+.+..++..|+.++ .++++|..+.+ .|++|.|+.+|++ +..+|++|+.+|.+++.++ ++|
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e-~nk 92 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLR 92 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-HHH
Confidence 456677788765 7788999999999999 99999999986 8999999999999 9999999999999999997 899
Q ss_pred HHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhc---hhhhhhhhcccchHHHHHHHhhcCC---hhhHHHHHHHHh
Q 001690 406 EAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKR---ETLGEKIGNTKDCITIMVSLLHNNN---PNLSQKAHDVLQ 477 (1028)
Q Consensus 406 ~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~---~~~~~~i~~~~g~I~~Lv~lL~~~~---~~~~~~a~~~L~ 477 (1028)
..|+..|+|++++.+|+++ +.+++|+.+|++|+.+ +.++..|+...|+||.|+.++++++ ..++..|+.+|+
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999886 5566676656899999999999874 235567789999
Q ss_pred ccccCchhHHH-HHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc-CcchHHHHhhCCcHHHHHHHhcCC-CHHHHHHH
Q 001690 478 NLSHNTHFAVK-MAEAGYFQPFVACFNRGSQETRALMASALRNMRL-DESSIKTLKDRQFIHNVIQMLSSN-SPVCKSAC 554 (1028)
Q Consensus 478 nL~~~~~n~~~-i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A 554 (1028)
||+.+++|+.. ++++|+||.|+.+|+++++..|.+|+++|.+++. +++.+..+++.|+||+|+++|+++ ++.+|++|
T Consensus 173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~A 252 (2102)
T PLN03200 173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEA 252 (2102)
T ss_pred HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHH
Confidence 99999999865 5799999999999999999999999999998865 477999999999999999999875 46899999
Q ss_pred HHHHHHHhcCC-HhHHHHHhCCCcHHHHHHHHhccCC-------ChhHHHHHHHHHHHHHcCCCC-----------C---
Q 001690 555 LKCIKTLIAHS-KMVKHLLLDPATIPLLLGLIQFVRS-------DPHLKHEAAEILALMVGGCQH-----------P--- 612 (1028)
Q Consensus 555 ~~aL~nL~~~~-~~~~~lv~~~g~v~~L~~lL~~~~~-------~~~l~~~a~~~L~nL~~~~~~-----------~--- 612 (1028)
+++|+|||.+. +++..+++. |++|+|++++..++. ...++++|+|+|.|+|.+... .
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~a-GgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADA-GGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchH
Confidence 99999999875 667777776 999999999985431 245789999999999985211 0
Q ss_pred c-----------------------cccc----------------c-------------------cchhhcccccHHHHHH
Q 001690 613 Q-----------------------FELH----------------H-------------------GLQELQSEHNVNVFLQ 634 (1028)
Q Consensus 613 ~-----------------------~~~~----------------~-------------------~~~~l~~~g~v~~Lv~ 634 (1028)
. .... + ..+.+.+.++++.|++
T Consensus 332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~ 411 (2102)
T PLN03200 332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG 411 (2102)
T ss_pred HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh
Confidence 0 0000 0 0112345677888999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 001690 635 LIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKE 714 (1028)
Q Consensus 635 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~ 714 (1028)
||..++.+.|..++++|.+||.++.+.+..|.. .|+++.|+++|.+++..+++.|+++|++|+. ......... .+.
T Consensus 412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~-~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~-~ndenr~aI--iea 487 (2102)
T PLN03200 412 LITMATADVQEELIRALSSLCCGKGGLWEALGG-REGVQLLISLLGLSSEQQQEYAVALLAILTD-EVDESKWAI--TAA 487 (2102)
T ss_pred hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHHHHHHH--HHC
Confidence 999999999999999999999998888888888 8999999999999999999999999999994 222222222 467
Q ss_pred ccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 001690 715 TAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAA 794 (1028)
Q Consensus 715 ~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~a 794 (1028)
|++++|+++|.+++. ..+..|+++|+|++.++.+.+..+.+.|++++|+++|.+. ....++.++++
T Consensus 488 GaIP~LV~LL~s~~~-~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-------------d~~~q~~Aa~A 553 (2102)
T PLN03200 488 GGIPPLVQLLETGSQ-KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-------------GPKGQEIAAKT 553 (2102)
T ss_pred CCHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-------------CHHHHHHHHHH
Confidence 999999999998764 8899999999999998778877788999999999999862 24556667777
Q ss_pred HHHhcCCCChH------------------------------------HHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHH
Q 001690 795 LLHFTDPTKPE------------------------------------LQRQVGKLEVYPSLIRVLSTGSSLAKQRAASAL 838 (1028)
Q Consensus 795 L~~l~~~~~~~------------------------------------~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL 838 (1028)
|.+++...+.+ .+..+...|++|.|++||+++++.+|+.|+|+|
T Consensus 554 L~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 554 LTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred HHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 77664211111 011112356677777777777777777777655
Q ss_pred ---Hhhhhcccc-cccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccc--cCCcccchhhhhcCcchh
Q 001690 839 ---ADLSQSTSV-SVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGA--ACSPRETFCLVKADAVKP 912 (1028)
Q Consensus 839 ---~~ls~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~--~~~~~~~~~l~~~gai~~ 912 (1028)
+.-.....+ .+.. -+.++++.+|...-. ....+....+-.- .....+...++++|+|+|
T Consensus 634 snL~a~~~d~~~avv~a-----------gaIpPLV~LLss~~~----~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~p 698 (2102)
T PLN03200 634 ADIFSSRQDLCESLATD-----------EIINPCIKLLTNNTE----AVATQSARALAALSRSIKENRKVSYAAEDAIKP 698 (2102)
T ss_pred HHHhcCChHHHHHHHHc-----------CCHHHHHHHHhcCCh----HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHH
Confidence 122111111 0000 011122222222100 0000000000000 001123346789999999
Q ss_pred HHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhhhhhc
Q 001690 913 LVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQ 992 (1028)
Q Consensus 913 Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~ 992 (1028)
|+++|++.|.++++.|+.||++|+.+++. ...+...|+|++|+++++.|++..|+.|.|+|.++++.....+.+..
T Consensus 699 L~~LL~~~d~~v~e~Al~ALanLl~~~e~----~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~ 774 (2102)
T PLN03200 699 LIKLAKSSSIEVAEQAVCALANLLSDPEV----AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD 774 (2102)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHcCchH----HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 99999999999999999999999998753 45667889999999999999999999999999999999988876633
Q ss_pred cc-----chHHHhhccc----cchHHHHHHHHHHhccCCCCCCC
Q 001690 993 RS-----ERILIQLLDD----DALKKKVALVLMQMNIIPHQSSY 1027 (1028)
Q Consensus 993 ~~-----~~~Lv~~l~~----~~~~~~aa~~L~~l~~~~~~s~~ 1027 (1028)
.. ..||+++|.+ ......|..+|+.|.+.-+.+.|
T Consensus 775 ~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~ 818 (2102)
T PLN03200 775 SVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANF 818 (2102)
T ss_pred HHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCC
Confidence 33 2599999999 33344599999999997666554
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=484.07 Aligned_cols=611 Identities=17% Similarity=0.209 Sum_probs=507.6
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhcCChhhhHHHHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhccc--HHHHHHH
Q 001690 332 FQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYS--DIHKEAI 408 (1028)
Q Consensus 332 i~~~~~~L~s~~~~~~~~al~~L~~l~~~~~~r~~i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~--~~~k~~i 408 (1028)
++.++..|.+++...+..++..|.+++..++++..+...|++|+|+.+|++ +...|+.|+.+|++|+.+. ++++..|
T Consensus 60 IP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I 139 (2102)
T PLN03200 60 MPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKI 139 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhh
Confidence 567888888899999999999999999778999999999999999999999 9999999999999999875 4566554
Q ss_pred -HHhchhHHHHHhhccC-----CchhHHHHHHHHhhhchhhhh-hhhcccchHHHHHHHhhcCChhhHHHHHHHHhcccc
Q 001690 409 -VEAGAVRRIVKQICKG-----ETMPEAIEVLSELTKRETLGE-KIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSH 481 (1028)
Q Consensus 409 -~~~g~i~~lv~~L~~~-----e~~~~A~~~L~~Ls~~~~~~~-~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~ 481 (1028)
+..|+|+.|+.+|+++ -.++.++.+|++|+..++++. .+.+ .|++|.|+.+|+++++..+..|+.+|.+++.
T Consensus 140 ~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIe-aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Las 218 (2102)
T PLN03200 140 FSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE-AGGVDILVKLLSSGNSDAQANAASLLARLMM 218 (2102)
T ss_pred hhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 4699999999999987 245667899999999887664 4455 7999999999999999999999999988876
Q ss_pred C-chhHHHHHHcCCchhHHHhhcCC-CHHHHHHHHHHHHHhhc-CcchHHHHhhCCcHHHHHHHhcCCCH---------H
Q 001690 482 N-THFAVKMAEAGYFQPFVACFNRG-SQETRALMASALRNMRL-DESSIKTLKDRQFIHNVIQMLSSNSP---------V 549 (1028)
Q Consensus 482 ~-~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~s~~~---------~ 549 (1028)
+ ++.+..++++|+||+|+++|.++ ++.+|++|+++|.+|+. +++++..+++.|+||+|++++.+++. .
T Consensus 219 s~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~ 298 (2102)
T PLN03200 219 AFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQA 298 (2102)
T ss_pred CChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchH
Confidence 6 56889999999999999999765 56899999999999976 57899999999999999999986553 3
Q ss_pred HHHHHHHHHHHHhcC--------------C--------------------------------------------------
Q 001690 550 CKSACLKCIKTLIAH--------------S-------------------------------------------------- 565 (1028)
Q Consensus 550 ~~~~A~~aL~nL~~~--------------~-------------------------------------------------- 565 (1028)
.+++|+|+|.|||.+ +
T Consensus 299 Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~ 378 (2102)
T PLN03200 299 LQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKL 378 (2102)
T ss_pred HHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCch
Confidence 488888888887763 0
Q ss_pred ----------------------------------------------------------HhHHHHHhCCCcHHHHHHHHhc
Q 001690 566 ----------------------------------------------------------KMVKHLLLDPATIPLLLGLIQF 587 (1028)
Q Consensus 566 ----------------------------------------------------------~~~~~lv~~~g~v~~L~~lL~~ 587 (1028)
+.++.++.. |++|.|+++|.+
T Consensus 379 vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~-ggIp~LV~LL~s 457 (2102)
T PLN03200 379 VQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR-EGVQLLISLLGL 457 (2102)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc-CcHHHHHHHHcC
Confidence 000111222 589999999987
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHh
Q 001690 588 VRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIES 667 (1028)
Q Consensus 588 ~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~ 667 (1028)
++ ...++.|+++|.|++.+..+ +...+.+.|+||+|+.+|.++++.++++|+++|.|++.++++++..+.+
T Consensus 458 ~s--~~iQ~~A~~~L~nLa~~nde-------nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~ 528 (2102)
T PLN03200 458 SS--EQQQEYAVALLAILTDEVDE-------SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVES 528 (2102)
T ss_pred CC--HHHHHHHHHHHHHHHcCCHH-------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 64 57889999999999975432 3467899999999999999999999999999999999998899998987
Q ss_pred hhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCC----------------------------------CCCCCCCCC
Q 001690 668 NNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNG----------------------------------VPLPPSPGK 713 (1028)
Q Consensus 668 ~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~----------------------------------~i~~~~~~~ 713 (1028)
.|++++|+.+|++++.+++..|+++|.+|....+.. +........
T Consensus 529 -aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~ 607 (2102)
T PLN03200 529 -AGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAA 607 (2102)
T ss_pred -CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhc
Confidence 899999999999999999999999999996322111 000000024
Q ss_pred cccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 001690 714 ETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALA 793 (1028)
Q Consensus 714 ~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~ 793 (1028)
.|+++.|+++|.+++. ..+..|+++|+|++.++.++...+...|+|++++.+|.+ + .....+.+++
T Consensus 608 ~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss------~-------~~~v~keAA~ 673 (2102)
T PLN03200 608 NDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN------N-------TEAVATQSAR 673 (2102)
T ss_pred cccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc------C-------ChHHHHHHHH
Confidence 5899999999999875 888999999999999999999999999999999999996 2 3678889999
Q ss_pred HHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhh
Q 001690 794 ALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLL 873 (1028)
Q Consensus 794 aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 873 (1028)
+|.+++...+...+..+.+.|++|+|+++|++.+.+++..|+.+|.|+......
T Consensus 674 AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~-------------------------- 727 (2102)
T PLN03200 674 ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV-------------------------- 727 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--------------------------
Confidence 999999766666666778999999999999999999999999999999876433
Q ss_pred hcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhcc
Q 001690 874 SMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQ 953 (1028)
Q Consensus 874 ~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~ 953 (1028)
...+...|+|++|+++|+++++++++.|++||.+|......-+.....+...|
T Consensus 728 ---------------------------~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g 780 (2102)
T PLN03200 728 ---------------------------AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG 780 (2102)
T ss_pred ---------------------------HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence 01244678999999999999999999999999999865432121335678899
Q ss_pred chHHHHHHHhcCChhHHHH--HHHHHHHHHhhhhhhh-------hhhccc--chHHHhhccc--cchHHHHHHHHHHhcc
Q 001690 954 GVLAILQVLEKGSLSAKTK--ALDLFQMIQKHTRITD-------TLLQRS--ERILIQLLDD--DALKKKVALVLMQMNI 1020 (1028)
Q Consensus 954 ~i~~l~~ll~~~~~~~~~~--A~~~l~~~~~~~~~~~-------~~~~~~--~~~Lv~~l~~--~~~~~~aa~~L~~l~~ 1020 (1028)
.+.+|++++...|.+.-.. |+.+|..+.+.+.... .+.+.. -.|||+.+.+ +.+..+|-.+|.+|-+
T Consensus 781 ~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 781 TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 9999999999877777766 9999999998755432 122211 2499998877 9999999999999876
Q ss_pred C
Q 001690 1021 I 1021 (1028)
Q Consensus 1021 ~ 1021 (1028)
.
T Consensus 861 ~ 861 (2102)
T PLN03200 861 D 861 (2102)
T ss_pred c
Confidence 5
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.4e-42 Score=351.04 Aligned_cols=420 Identities=18% Similarity=0.165 Sum_probs=358.4
Q ss_pred chHHHHHHHhhcCChhhHHHHHHHHhccccCc--hhHHHHHHcCCchhHHHhh-cCCCHHHHHHHHHHHHHhhcC-cchH
Q 001690 452 DCITIMVSLLHNNNPNLSQKAHDVLQNLSHNT--HFAVKMAEAGYFQPFVACF-NRGSQETRALMASALRNMRLD-ESSI 527 (1028)
Q Consensus 452 g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~--~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~-~~~~ 527 (1028)
.-+|.|..-|.++|.+.+..|+.-++.+.+.+ .-...++++|+||.++++| ......++.+|+|+|.|+++. ....
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 35688999899999999998988777765544 4578889999999999999 556667899999999999654 4555
Q ss_pred HHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHc
Q 001690 528 KTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVG 607 (1028)
Q Consensus 528 ~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~ 607 (1028)
..++++|++|.+++||.+++..++++|+|+|+|++.+.+..+..+-.+|++.+++.++.+...+..+.+++.|+|.|||+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 55689999999999999999999999999999999998766666655599999999999877667889999999999999
Q ss_pred CCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHH
Q 001690 608 GCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVR 687 (1028)
Q Consensus 608 ~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~ 687 (1028)
+...+.. ...| ..++|.|..|+.+.++++.
T Consensus 231 GknP~P~-----------------------------------------------w~~i---sqalpiL~KLiys~D~evl 260 (526)
T COG5064 231 GKNPPPD-----------------------------------------------WSNI---SQALPILAKLIYSRDPEVL 260 (526)
T ss_pred CCCCCCc-----------------------------------------------hHHH---HHHHHHHHHHHhhcCHHHH
Confidence 7643332 2223 3589999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHH
Q 001690 688 RWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVI 767 (1028)
Q Consensus 688 ~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL 767 (1028)
..|+|++++|+ +++.+.+... ++.|..+.||.+|.+++. .++.+|+..++|+..+++..++.+++.|+++.+..+|
T Consensus 261 vDA~WAiSYls-Dg~~E~i~av--ld~g~~~RLvElLs~~sa-~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lL 336 (526)
T COG5064 261 VDACWAISYLS-DGPNEKIQAV--LDVGIPGRLVELLSHESA-KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLL 336 (526)
T ss_pred HHHHHHHHHhc-cCcHHHHHHH--HhcCCcHHHHHHhcCccc-cccCHHHHhhcCeeecCccceehheecccHHHHHHHh
Confidence 99999999999 5666666655 678999999999999775 7889999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccc
Q 001690 768 CSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSV 847 (1028)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~ 847 (1028)
.+.+ ..+.+.++|.+.++|+ .+.+..+++.+.+.+|+|+.+|.+.+..+|++|+||+.|.+.+..+
T Consensus 337 s~~k-------------e~irKEaCWTiSNITA-Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 337 SSPK-------------ENIRKEACWTISNITA-GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred cChh-------------hhhhhhhheeeccccc-CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 8642 4567788999999997 5778888999999999999999999999999999999998865444
Q ss_pred cccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHH
Q 001690 848 SVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEA 927 (1028)
Q Consensus 848 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~ 927 (1028)
++ ....+|++.|+|+||+.+|+-.|.++.+.
T Consensus 403 --------~P-----------------------------------------D~iryLv~qG~IkpLc~~L~~~dNkiiev 433 (526)
T COG5064 403 --------RP-----------------------------------------DIIRYLVSQGFIKPLCDLLDVVDNKIIEV 433 (526)
T ss_pred --------Cc-----------------------------------------hHHHHHHHccchhHHHHHHhccCccchhh
Confidence 21 12357899999999999999999999999
Q ss_pred HHHHHHHhhhcccc--------hhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhh
Q 001690 928 ALTALETLLADHST--------LSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITD 988 (1028)
Q Consensus 928 A~~aL~~L~~d~~~--------~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~~ 988 (1028)
++.|+.+++.-++. ...+...+.++||++.|..++.+++..+++||..++++||..++--+
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd 502 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVD 502 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhh
Confidence 99999999977662 33446678889999999999999999999999999999996665443
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-41 Score=376.61 Aligned_cols=415 Identities=17% Similarity=0.167 Sum_probs=358.9
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhccccCch--hHHHHHHcCCchhHHHhhc-CCCHHHHHHHHHHHHHhh-cCcchHHH
Q 001690 454 ITIMVSLLHNNNPNLSQKAHDVLQNLSHNTH--FAVKMAEAGYFQPFVACFN-RGSQETRALMASALRNMR-LDESSIKT 529 (1028)
Q Consensus 454 I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~--n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~La-~~~~~~~~ 529 (1028)
.+.++..+.++++..+..+...++.|...+. ....++..|+||.||..|. +.++.++.+|+|+|.|++ ++.+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 6778888889999999999999998876554 4667777899999999996 566999999999999995 56788888
Q ss_pred HhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCC
Q 001690 530 LKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGC 609 (1028)
Q Consensus 530 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~ 609 (1028)
++++|++|.++.++.+++..+++.|+|+|+|++.++...+..+-.+|++++|+.++..... ..+.++++|+|.|||++.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGK 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999986655555555999999999987654 467899999999999976
Q ss_pred CCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHH
Q 001690 610 QHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRW 689 (1028)
Q Consensus 610 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~ 689 (1028)
..... . ..+ ..++|.|..++.+.|+++...
T Consensus 227 ~P~P~----------------------------~-------------------~~v---~~iLp~L~~ll~~~D~~Vl~D 256 (514)
T KOG0166|consen 227 NPSPP----------------------------F-------------------DVV---APILPALLRLLHSTDEEVLTD 256 (514)
T ss_pred CCCCc----------------------------H-------------------HHH---HHHHHHHHHHHhcCCHHHHHH
Confidence 32111 0 112 468999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHh
Q 001690 690 AMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICS 769 (1028)
Q Consensus 690 A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~ 769 (1028)
|+|+|++|+ +++.+.+... ++.|.++.||.+|.+++. .++.+|+.+++|++.+++.+++.+++.|++|.|..++..
T Consensus 257 a~WAlsyLs-dg~ne~iq~v--i~~gvv~~LV~lL~~~~~-~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 257 ACWALSYLT-DGSNEKIQMV--IDAGVVPRLVDLLGHSSP-KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred HHHHHHHHh-cCChHHHHHH--HHccchHHHHHHHcCCCc-ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence 999999999 5666566555 678999999999999886 778999999999999999999999999999999999994
Q ss_pred hcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccc
Q 001690 770 MDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSV 849 (1028)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~ 849 (1028)
. ......+.++|++.|+|+ ++++..+++.+.|++|.|+.+|++++.++|++||||++|++.+...
T Consensus 333 s------------~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~-- 397 (514)
T KOG0166|consen 333 S------------PKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP-- 397 (514)
T ss_pred C------------cchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH--
Confidence 2 124577889999999998 6888889999999999999999999999999999999999865322
Q ss_pred cccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHH
Q 001690 850 SNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAAL 929 (1028)
Q Consensus 850 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~ 929 (1028)
++.++|++.|+|+||+++|...|.++..+++
T Consensus 398 -------------------------------------------------~qi~yLv~~giI~plcdlL~~~D~~ii~v~L 428 (514)
T KOG0166|consen 398 -------------------------------------------------EQIKYLVEQGIIKPLCDLLTCPDVKIILVAL 428 (514)
T ss_pred -------------------------------------------------HHHHHHHHcCCchhhhhcccCCChHHHHHHH
Confidence 2346899999999999999999999999999
Q ss_pred HHHHHhhhcccch-----hhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhh
Q 001690 930 TALETLLADHSTL-----SHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRIT 987 (1028)
Q Consensus 930 ~aL~~L~~d~~~~-----~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~ 987 (1028)
.+|++++.-++.. ......|.++||+++|..|+.|++.+++++|..++++||..++..
T Consensus 429 d~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~ 491 (514)
T KOG0166|consen 429 DGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDE 491 (514)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccc
Confidence 9999999776643 345778999999999999999999999999999999999876444
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-34 Score=294.44 Aligned_cols=465 Identities=15% Similarity=0.142 Sum_probs=386.6
Q ss_pred CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcC
Q 001690 425 ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNR 504 (1028)
Q Consensus 425 e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~ 504 (1028)
..+..|+-+....... .-..+. ...+.+...++++.++..+..|..++.|++.+.+|+..+++.+++.+|+.-+.+
T Consensus 62 nlqrsaalafAeitek--~vr~Vs--res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt 137 (550)
T KOG4224|consen 62 NLQRSAALAFAEITEK--GVRRVS--RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT 137 (550)
T ss_pred ccchHHHHHHHHHHHH--HHHHhh--hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC
Confidence 5555555555554331 122222 357788888999999999999999999999999999999999999999998888
Q ss_pred CCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHH
Q 001690 505 GSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGL 584 (1028)
Q Consensus 505 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~l 584 (1028)
+..++|..++.++++|+..+++|..|...|++.+|.++-++.+..+|.+|.++|.|+....++++.++.+ |++|.|+++
T Consensus 138 d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~a-G~lpvLVsl 216 (550)
T KOG4224|consen 138 DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHA-GGLPVLVSL 216 (550)
T ss_pred CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhcc-CCchhhhhh
Confidence 8889999999999999999999999999999999999888999999999999999999999999999999 999999999
Q ss_pred HhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccc--cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHH
Q 001690 585 IQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEH--NVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVR 662 (1028)
Q Consensus 585 L~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g--~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 662 (1028)
+++++ ..+++.|..++.|++-... .++.+.+.+ .|+.|++++.++++.+|..|.-+|.+|++..+..+
T Consensus 217 l~s~d--~dvqyycttaisnIaVd~~--------~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 217 LKSGD--LDVQYYCTTAISNIAVDRR--------ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred hccCC--hhHHHHHHHHhhhhhhhHH--------HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 99876 5788999999999997443 356677777 99999999999999999999999999999887777
Q ss_pred HHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhc
Q 001690 663 NLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQ 742 (1028)
Q Consensus 663 ~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~n 742 (1028)
.++. +|++|.+++|++++........+.+++|++ -++.++..- .++|++.+||++|..+++++.+..|..+|.|
T Consensus 287 eiv~--ag~lP~lv~Llqs~~~plilasVaCIrnis-ihplNe~lI---~dagfl~pLVrlL~~~dnEeiqchAvstLrn 360 (550)
T KOG4224|consen 287 EIVE--AGSLPLLVELLQSPMGPLILASVACIRNIS-IHPLNEVLI---ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRN 360 (550)
T ss_pred HHHh--cCCchHHHHHHhCcchhHHHHHHHHHhhcc-cccCcccce---ecccchhHHHHHHhcCCchhhhhhHHHHHHH
Confidence 6655 699999999999998888888899999999 566554322 5789999999999999998899999999999
Q ss_pred CCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHH
Q 001690 743 LPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRV 822 (1028)
Q Consensus 743 L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~l 822 (1028)
|+......+..+.+.|++|.+..++.. + ...+++...+++..++- +...+..+.+.|++|.|+.+
T Consensus 361 LAasse~n~~~i~esgAi~kl~eL~lD------~-------pvsvqseisac~a~Lal--~d~~k~~lld~gi~~iLIp~ 425 (550)
T KOG4224|consen 361 LAASSEHNVSVIRESGAIPKLIELLLD------G-------PVSVQSEISACIAQLAL--NDNDKEALLDSGIIPILIPW 425 (550)
T ss_pred HhhhhhhhhHHHhhcCchHHHHHHHhc------C-------ChhHHHHHHHHHHHHHh--ccccHHHHhhcCCcceeecc
Confidence 999888899999999999999999995 2 36778888888888873 44555668999999999999
Q ss_pred hhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccch
Q 001690 823 LSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETF 902 (1028)
Q Consensus 823 L~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~ 902 (1028)
+.+.+.+++-.||.||.|++....+ ..+. .+. |-. |
T Consensus 426 t~s~s~Ev~gNaAaAL~Nlss~v~~------Yarv---------------iEa-wd~---P------------------- 461 (550)
T KOG4224|consen 426 TGSESEEVRGNAAAALINLSSDVEH------YARV---------------IEA-WDH---P------------------- 461 (550)
T ss_pred cCccchhhcccHHHHHHhhhhhhHH------HHHH---------------HHH-hcC---c-------------------
Confidence 9999999999999999999987666 3222 111 100 0
Q ss_pred hhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHh
Q 001690 903 CLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQK 982 (1028)
Q Consensus 903 ~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~ 982 (1028)
..|.=..|++++.+.+.-++..|.|.+-.|+.|+. +++..++++. +++-+.+-.++++...
T Consensus 462 ---~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~---------------~~~~~~i~~~-ddii~~~~~~~~r~~~ 522 (550)
T KOG4224|consen 462 ---VQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD---------------LPLTAFIQSS-DDIIELLNDIVARDAN 522 (550)
T ss_pred ---chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC---------------ccHHHHHhCc-hhHHHHHHHHHHHhcc
Confidence 13344678999999999999999999999996643 4555666555 4555777777777766
Q ss_pred hhhhhh
Q 001690 983 HTRITD 988 (1028)
Q Consensus 983 ~~~~~~ 988 (1028)
..++.+
T Consensus 523 ~g~~~~ 528 (550)
T KOG4224|consen 523 NGEYED 528 (550)
T ss_pred CCcccC
Confidence 665554
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-32 Score=282.43 Aligned_cols=378 Identities=16% Similarity=0.164 Sum_probs=325.9
Q ss_pred cHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhchhhhhhhh
Q 001690 372 LIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEKIG 448 (1028)
Q Consensus 372 ~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i~ 448 (1028)
..++..-++.+ ++.+|..+..++.|++.+. +||..|++.+++..++..+... +++.+++.++++|+..++++..|.
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhh
Confidence 45667778888 9999999999999999999 8999999988888777665554 999999999999999999999999
Q ss_pred cccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHH
Q 001690 449 NTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIK 528 (1028)
Q Consensus 449 ~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~ 528 (1028)
. .|++.+|.++-++.+..+|.+|..+|.|+....+|+..++.+|++|.|+.++++++.++|..+..++.+++.+..+|+
T Consensus 165 ~-sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 165 R-SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred h-ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 9 799999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC--cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001690 529 TLKDRQ--FIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMV 606 (1028)
Q Consensus 529 ~i~~~g--~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~ 606 (1028)
.+++.| .||.||++++++++++|-.|..+|.||+.+.+....++++ |++|.++++|+++.. .+.-..+..+.|++
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a-g~lP~lv~Llqs~~~--plilasVaCIrnis 320 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA-GSLPLLVELLQSPMG--PLILASVACIRNIS 320 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc-CCchHHHHHHhCcch--hHHHHHHHHHhhcc
Confidence 999988 8999999999999999999999999999999999999999 999999999986543 33455666788898
Q ss_pred cCCCCCcccccccchhhcccccHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChh
Q 001690 607 GGCQHPQFELHHGLQELQSEHNVNVFLQLIANTE-RETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPV 685 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~-~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~ 685 (1028)
-.+.+ -..+.+.|.+.+|+.+|..++ .++|.+|..+|.+|+.+++..++.|++ .|+++.|+.|+..+.-.
T Consensus 321 ihplN--------e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvs 391 (550)
T KOG4224|consen 321 IHPLN--------EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVS 391 (550)
T ss_pred cccCc--------ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChh
Confidence 86643 346889999999999999665 559999999999999999889999999 99999999999988888
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHh------ccc
Q 001690 686 VRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCK------SEA 759 (1028)
Q Consensus 686 v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~------~g~ 759 (1028)
++..-..++..|+ ..+. ..... .+.|.++.|+.+..+.+. +++..|+.+|.|++.+-... ..+++ .|.
T Consensus 392 vqseisac~a~La-l~d~-~k~~l--ld~gi~~iLIp~t~s~s~-Ev~gNaAaAL~Nlss~v~~Y-arviEawd~P~~gi 465 (550)
T KOG4224|consen 392 VQSEISACIAQLA-LNDN-DKEAL--LDSGIIPILIPWTGSESE-EVRGNAAAALINLSSDVEHY-ARVIEAWDHPVQGI 465 (550)
T ss_pred HHHHHHHHHHHHH-hccc-cHHHH--hhcCCcceeecccCccch-hhcccHHHHHHhhhhhhHHH-HHHHHHhcCcchhH
Confidence 8888888888887 2222 21222 467899999999888765 89999999999999844443 33333 233
Q ss_pred hHHHHHHHHh
Q 001690 760 LKAIHEVICS 769 (1028)
Q Consensus 760 v~~L~~lL~~ 769 (1028)
-..|+.++.+
T Consensus 466 ~g~L~Rfl~S 475 (550)
T KOG4224|consen 466 QGRLARFLAS 475 (550)
T ss_pred HHHHHHHHhh
Confidence 3356666664
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.7e-28 Score=269.62 Aligned_cols=399 Identities=16% Similarity=0.216 Sum_probs=330.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCc
Q 001690 536 IHNVIQMLSSNSPVCKSACLKCIKTLIAHS--KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQ 613 (1028)
Q Consensus 536 i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~--~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~ 613 (1028)
.+.++..+.+.++..+..+...+..|-+.. +....++.. |+||.++..|..+.. +.++..|+|+|.|++.+...+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~-~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDN-PTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCC-hhHHHHHHHHHHHHhcCchhhc
Confidence 678888889999888888888888875443 556777888 999999999986543 6889999999999999876543
Q ss_pred ccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCCh-hHHHHHHH
Q 001690 614 FELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQP-VVRRWAMR 692 (1028)
Q Consensus 614 ~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~-~v~~~A~~ 692 (1028)
+.+.+.|++|.|+.++.+++.++++.|+++|.|++.+++.+|..+.. .|++++|+.++...+. ...+++.|
T Consensus 146 -------~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~-~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 146 -------KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLS-CGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred -------cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHh-hcchHHHHHHhccccchHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999 9999999999988887 78999999
Q ss_pred HHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcC
Q 001690 693 LIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDG 772 (1028)
Q Consensus 693 ~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~ 772 (1028)
+|+||++... ....+..-...++.|..+|.+.+. ++...|+++|++|+.+..+..+.+++.|++|.|+.+|.+.
T Consensus 218 ~LsNlcrgk~---P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-- 291 (514)
T KOG0166|consen 218 TLSNLCRGKN---PSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-- 291 (514)
T ss_pred HHHHHHcCCC---CCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--
Confidence 9999995432 112211224678888898888765 8889999999999999999999999999999999999962
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhh-cCCHHHHHHHHHHHHhhhhcccccccc
Q 001690 773 RHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLS-TGSSLAKQRAASALADLSQSTSVSVSN 851 (1028)
Q Consensus 773 ~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~vk~~Aa~aL~~ls~~~~~~~~~ 851 (1028)
...+.-.+..++.+++. ++....+.+.+.|++|.|..+|. +....+|++|+|.|.|++.+...
T Consensus 292 -----------~~~v~~PaLRaiGNIvt-G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~---- 355 (514)
T KOG0166|consen 292 -----------SPKVVTPALRAIGNIVT-GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE---- 355 (514)
T ss_pred -----------CcccccHHHhhccceee-ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH----
Confidence 23455667788888775 45555677899999999999999 55666999999999999875433
Q ss_pred cccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHH
Q 001690 852 ATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTA 931 (1028)
Q Consensus 852 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~a 931 (1028)
+..+++.+|.+++|+.+|.+.+-+++..|+||
T Consensus 356 ------------------------------------------------qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 356 ------------------------------------------------QIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred ------------------------------------------------HHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 11356789999999999999999999999999
Q ss_pred HHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhhh---------hhcccchHHHhhc
Q 001690 932 LETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDT---------LLQRSERILIQLL 1002 (1028)
Q Consensus 932 L~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~~~---------~~~~~~~~Lv~~l 1002 (1028)
++|+...+. .+-...+.+.|.|+++..+|.-.|..+-..++.+|+.++++.+.... +...++.-.|+.|
T Consensus 388 IsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L 465 (514)
T KOG0166|consen 388 ISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL 465 (514)
T ss_pred HHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence 999997765 34467899999999999999988999999999999999998876643 2333346788888
Q ss_pred cc---cchHHHHHHHHH
Q 001690 1003 DD---DALKKKVALVLM 1016 (1028)
Q Consensus 1003 ~~---~~~~~~aa~~L~ 1016 (1028)
|+ ..+.+.|-.++-
T Consensus 466 Q~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 466 QSHENEEIYKKAYKIID 482 (514)
T ss_pred hccccHHHHHHHHHHHH
Confidence 88 456666655554
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.3e-27 Score=245.23 Aligned_cols=400 Identities=16% Similarity=0.148 Sum_probs=324.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHH-hcC-CHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCC
Q 001690 535 FIHNVIQMLSSNSPVCKSACLKCIKTL-IAH-SKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHP 612 (1028)
Q Consensus 535 ~i~~Lv~lL~s~~~~~~~~A~~aL~nL-~~~-~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~ 612 (1028)
-+|.|.+-|.|.+.+.+..|+.-...+ +.. .+..+.++.. |++|.+++++.+... .-++-.|+|+|.|++.+..++
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIda-GvVpRfvefm~~~q~-~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDA-GVVPRFVEFMDEIQR-DMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhc-cccHHHHHHHHhcch-hHHHHHHHHHHhhhccCcccc
Confidence 358888888888888888887777665 433 3567778888 999999999975443 457789999999999988765
Q ss_pred cccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCCh--hHHHHH
Q 001690 613 QFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQP--VVRRWA 690 (1028)
Q Consensus 613 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~--~v~~~A 690 (1028)
. +.+++.|+||.++.+|.++..++++++.++|.|++-+++.+|..+.+ .|++++|+.++.+... .+.+++
T Consensus 150 T-------kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~-~galeplL~ll~ss~~~ismlRn~ 221 (526)
T COG5064 150 T-------KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQ-CGALEPLLGLLLSSAIHISMLRNA 221 (526)
T ss_pred e-------EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHh-cCchHHHHHHHHhccchHHHHHHh
Confidence 5 47889999999999999999999999999999999999999999999 9999999999887766 788999
Q ss_pred HHHHHHhcCCCC-CCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHh
Q 001690 691 MRLIHCISEGNP-NGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICS 769 (1028)
Q Consensus 691 ~~~L~~Ls~~~~-~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~ 769 (1028)
.|+|+||++... ...+.. -..+++.|.+++.+.+. ++...|+++|+.|+.+..+..+.+++.|..+.|+++|.+
T Consensus 222 TWtLSNlcRGknP~P~w~~----isqalpiL~KLiys~D~-evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~ 296 (526)
T COG5064 222 TWTLSNLCRGKNPPPDWSN----ISQALPILAKLIYSRDP-EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH 296 (526)
T ss_pred HHHHHHhhCCCCCCCchHH----HHHHHHHHHHHHhhcCH-HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC
Confidence 999999995322 122222 13578889999888765 888999999999999888888999999999999999996
Q ss_pred hcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccc
Q 001690 770 MDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSV 849 (1028)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~ 849 (1028)
. +..++..+...+.++..+++.+. +.+++.|+++.|-.+|++....++++|+|.+.|++.+...
T Consensus 297 ~-------------sa~iqtPalR~vGNIVTG~D~QT-qviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnte-- 360 (526)
T COG5064 297 E-------------SAKIQTPALRSVGNIVTGSDDQT-QVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTE-- 360 (526)
T ss_pred c-------------cccccCHHHHhhcCeeecCccce-ehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHH--
Confidence 3 23445566677777765544443 5678999999999999999889999999999998764322
Q ss_pred cccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHH
Q 001690 850 SNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAAL 929 (1028)
Q Consensus 850 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~ 929 (1028)
+..++++++.|+|||.+|.+.+-.++..|.
T Consensus 361 --------------------------------------------------qiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 361 --------------------------------------------------QIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred --------------------------------------------------HHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 123577899999999999999999999999
Q ss_pred HHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhh-----------hhhhccc-chH
Q 001690 930 TALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRIT-----------DTLLQRS-ERI 997 (1028)
Q Consensus 930 ~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~-----------~~~~~~~-~~~ 997 (1028)
||++|....+.+.....+.+.+.|.|+||..++.-.+..+-+.++.+++++++.++.. ..|...+ ++-
T Consensus 391 WAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd 470 (526)
T COG5064 391 WAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMD 470 (526)
T ss_pred HHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHH
Confidence 9999999877766666889999999999999999887889999999999999987754 2333323 466
Q ss_pred HHhhccc---cchHHHHHHHH
Q 001690 998 LIQLLDD---DALKKKVALVL 1015 (1028)
Q Consensus 998 Lv~~l~~---~~~~~~aa~~L 1015 (1028)
.|.=+|+ ..+-..|=.++
T Consensus 471 ~I~~~Q~s~n~~iy~KAYsII 491 (526)
T COG5064 471 AIHGLQDSVNRTIYDKAYSII 491 (526)
T ss_pred HHHHhhhccccHHHHHHHHHH
Confidence 6766666 44444444443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=7.9e-25 Score=258.56 Aligned_cols=481 Identities=15% Similarity=0.219 Sum_probs=373.0
Q ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHhcccHHHHHHHHH-hchhHHHHHhhccC-----CchhHHHHHHHHhhhchhhhh
Q 001690 372 LIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVE-AGAVRRIVKQICKG-----ETMPEAIEVLSELTKRETLGE 445 (1028)
Q Consensus 372 ~ip~Lv~lL~s~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-~g~i~~lv~~L~~~-----e~~~~A~~~L~~Ls~~~~~~~ 445 (1028)
-+...+++|..+...+..+...+..|+.+. +|-+.+.+ .-.+..+.++|+.. +...+-+..++.+|...++..
T Consensus 124 ~~d~yiE~lYe~~~ek~~~~~~il~La~~~-~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~ 202 (708)
T PF05804_consen 124 DLDEYIELLYEDIPEKIRGTSLILQLARNP-ENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHP 202 (708)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCc-chHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 345567777765455777889999999999 77777766 66788888998765 555666667777776555444
Q ss_pred hhhcc-cch----------------------------------------HHHHHHHhhcCChhhHHHHHHHHhccccCch
Q 001690 446 KIGNT-KDC----------------------------------------ITIMVSLLHNNNPNLSQKAHDVLQNLSHNTH 484 (1028)
Q Consensus 446 ~i~~~-~g~----------------------------------------I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~ 484 (1028)
.+... -|+ ...+-.+++ ........+...|.||+.+..
T Consensus 203 ~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~-kQeqLlrv~~~lLlNLAed~~ 281 (708)
T PF05804_consen 203 ILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIR-KQEQLLRVAFYLLLNLAEDPR 281 (708)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChH
Confidence 44321 000 011111111 123344567778999999999
Q ss_pred hHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 001690 485 FAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAH 564 (1028)
Q Consensus 485 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~ 564 (1028)
+...|++.|+|+.|+.+|..++.++...++..|.+|+...+|+..+.+.|+|++|++++.+++...+..++++|.|||.+
T Consensus 282 ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd 361 (708)
T PF05804_consen 282 VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD 361 (708)
T ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc-CCCHHH
Q 001690 565 SKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA-NTERET 643 (1028)
Q Consensus 565 ~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~ 643 (1028)
+..+..+++. |++|+|+.+|..+ ..+..+..+|.|++.... +...+...++++.++.++. .+.+.+
T Consensus 362 ~~~R~~mV~~-GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~--------~r~~f~~TdcIp~L~~~Ll~~~~~~v 428 (708)
T PF05804_consen 362 PELRSQMVSL-GLIPKLVELLKDP----NFREVALKILYNLSMDDE--------ARSMFAYTDCIPQLMQMLLENSEEEV 428 (708)
T ss_pred HHHHHHHHHC-CCcHHHHHHhCCC----chHHHHHHHHHHhccCHh--------hHHHHhhcchHHHHHHHHHhCCCccc
Confidence 9999999999 9999999999854 345789999999998543 2456777889999999866 566778
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHh
Q 001690 644 KIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAI 723 (1028)
Q Consensus 644 ~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~l 723 (1028)
...++.++.||+.+...+. .+.+ .+|++.|+...-...+.+ ..++++|+| .+++. .... -.+.+.+|+.+
T Consensus 429 ~~eliaL~iNLa~~~rnaq-lm~~-g~gL~~L~~ra~~~~D~l---LlKlIRNiS-~h~~~-~k~~---f~~~i~~L~~~ 498 (708)
T PF05804_consen 429 QLELIALLINLALNKRNAQ-LMCE-GNGLQSLMKRALKTRDPL---LLKLIRNIS-QHDGP-LKEL---FVDFIGDLAKI 498 (708)
T ss_pred cHHHHHHHHHHhcCHHHHH-HHHh-cCcHHHHHHHHHhcccHH---HHHHHHHHH-hcCch-HHHH---HHHHHHHHHHH
Confidence 8889999999999887664 5556 699999998655444322 347999999 45532 2222 23689999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCC
Q 001690 724 FTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTK 803 (1028)
Q Consensus 724 L~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~ 803 (1028)
+..+++.+....++|+|+||+..+.+..+.+.+.+.+|.|.++|.. |. ...+++-.++-.+..++ .+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~------g~-----~~dDl~LE~Vi~~gtla--~d 565 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP------GA-----SEDDLLLEVVILLGTLA--SD 565 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC------CC-----CChHHHHHHHHHHHHHH--CC
Confidence 9998888889999999999998888888888899999999999984 21 12345555555555555 68
Q ss_pred hHHHHHHhhcCCHHHHHHHhhcC--CHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCC
Q 001690 804 PELQRQVGKLEVYPSLIRVLSTG--SSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSS 881 (1028)
Q Consensus 804 ~~~~~~i~~~~~i~~Lv~lL~s~--~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 881 (1028)
+.....+.+.|.++.|+++|++. +.+..-..+.++.++...... + .
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------r------------------~------- 613 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------R------------------E------- 613 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------H------------------H-------
Confidence 88888899999999999999964 567777788888887654222 0 0
Q ss_pred CCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccch
Q 001690 882 WGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTL 942 (1028)
Q Consensus 882 ~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~ 942 (1028)
+-+-+.+++.-|+.++.+.|..++..|-.+|.-+..-++.|
T Consensus 614 --------------------~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 614 --------------------VLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred --------------------HHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 11335778999999999999999999999998887544433
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=1.3e-22 Score=239.83 Aligned_cols=387 Identities=14% Similarity=0.157 Sum_probs=317.8
Q ss_pred CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcC
Q 001690 425 ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNR 504 (1028)
Q Consensus 425 e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~ 504 (1028)
.....+...|.||+.+..+...+.+ .|.|+.|+++|.+++.+....++.+|.+||...+|+..|.+.|+|++|++++.+
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~-~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVN-KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 3345677789999999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHH
Q 001690 505 GSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGL 584 (1028)
Q Consensus 505 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~l 584 (1028)
++.+++..++.+|.||+.+++.|..+++.|++|+|+.+|.++ ..+..|..+|++||.+++.+..+... +++|.++.+
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~ 419 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQM 419 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHH
Confidence 999999999999999999999999999999999999999854 46678999999999999888877776 999999999
Q ss_pred HhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHH
Q 001690 585 IQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNL 664 (1028)
Q Consensus 585 L~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 664 (1028)
+..++. ..+...+.+++.||+.... +.+.+.+.++++.|+...-..... -.++.+.|++.+++..+..
T Consensus 420 Ll~~~~-~~v~~eliaL~iNLa~~~r--------naqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~ 487 (708)
T PF05804_consen 420 LLENSE-EEVQLELIALLINLALNKR--------NAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKEL 487 (708)
T ss_pred HHhCCC-ccccHHHHHHHHHHhcCHH--------HHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHH
Confidence 877543 4445677888999998553 356788889999999986543322 2457899999998666666
Q ss_pred HHhhhchHHHHHhhhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC-CHHHHHHHHHHHhc
Q 001690 665 IESNNDAITQLFSSLDSDQ-PVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP-DVEERSLAAGIISQ 742 (1028)
Q Consensus 665 i~~~~g~v~~Lv~Ll~~~~-~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~~a~~~L~n 742 (1028)
+. +.+.+|+.++..++ ++....+..+|+||+- ++-.+...+ ...+.+|.|.++|..+. .++....++.+++.
T Consensus 488 f~---~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~--~~ld~~~ll-~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gt 561 (708)
T PF05804_consen 488 FV---DFIGDLAKIVSSGDSEEFVVECLGILANLTI--PDLDWAQLL-QEYNLLPWLKDLLKPGASEDDLLLEVVILLGT 561 (708)
T ss_pred HH---HHHHHHHHHhhcCCcHHHHHHHHHHHHhccc--CCcCHHHHH-HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 53 57888888887754 5899999999999983 232333332 23578999999998764 34667778888888
Q ss_pred CCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHh-hcCCHHHHHH
Q 001690 743 LPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVG-KLEVYPSLIR 821 (1028)
Q Consensus 743 L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~-~~~~i~~Lv~ 821 (1028)
++. ++.....+.+.|.++.|+++|.+.++ +.++.-..+-++.+|. .+++.+..+. +.+++..|++
T Consensus 562 la~-d~~~A~lL~~sgli~~Li~LL~~kqe-----------DdE~VlQil~~f~~ll--~h~~tr~~ll~~~~~~~ylid 627 (708)
T PF05804_consen 562 LAS-DPECAPLLAKSGLIPTLIELLNAKQE-----------DDEIVLQILYVFYQLL--FHEETREVLLKETEIPAYLID 627 (708)
T ss_pred HHC-CHHHHHHHHhCChHHHHHHHHHhhCc-----------hHHHHHHHHHHHHHHH--cChHHHHHHHhccchHHHHHH
Confidence 876 88888999999999999999996322 4677777888888887 3556666654 4677779999
Q ss_pred HhhcCCHHHHHHHHHHHHhhhhcccc
Q 001690 822 VLSTGSSLAKQRAASALADLSQSTSV 847 (1028)
Q Consensus 822 lL~s~~~~vk~~Aa~aL~~ls~~~~~ 847 (1028)
++++.++++++.|-.+|--++.....
T Consensus 628 L~~d~N~~ir~~~d~~Ldii~e~d~~ 653 (708)
T PF05804_consen 628 LMHDKNAEIRKVCDNALDIIAEYDEE 653 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999888765433
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=1e-20 Score=217.74 Aligned_cols=441 Identities=15% Similarity=0.152 Sum_probs=319.1
Q ss_pred chHHHHHHHhhcCChhhHHHHHHHHhccccCch-hHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh---cCcchH
Q 001690 452 DCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTH-FAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR---LDESSI 527 (1028)
Q Consensus 452 g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La---~~~~~~ 527 (1028)
-.+|.-+.+|.+.++..|-+|+..+..+|..+. .+.++.+-|+|+.||.+|.+.+.+++..|+++|.||. .+++++
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 367889999999999999999999999998765 5666667899999999999999999999999999994 345699
Q ss_pred HHHhhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001690 528 KTLKDRQFIHNVIQMLSS-NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMV 606 (1028)
Q Consensus 528 ~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~ 606 (1028)
.+|.+.++|+.++++|+. .+.++++...++||||++++..+..++.+ ++..|..-+-.+.+. | .
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~--al~tLt~~vI~P~Sg--------w-----~ 377 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS--ALSTLTDNVIIPHSG--------W-----E 377 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH--HHHHHHHhhcccccc--------c-----C
Confidence 999999999999999995 89999999999999999998777777775 666666555433210 0 0
Q ss_pred cCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcC-----
Q 001690 607 GGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDS----- 681 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~----- 681 (1028)
..+. + ....+.++-.++.++|.|+++.....|+.++++.|.|..|+.++++
T Consensus 378 ~~~~-------------------~-----~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 378 EEPA-------------------P-----RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred CCCc-------------------c-----cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 0000 0 1223456677999999999999999999999988999999988873
Q ss_pred -CChhHHHHHHHHHHHhcCCCCCCCCCCCCC---------CCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHH
Q 001690 682 -DQPVVRRWAMRLIHCISEGNPNGVPLPPSP---------GKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVD 751 (1028)
Q Consensus 682 -~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~---------~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~ 751 (1028)
.+..-.++++++|+||+ ++-..++..... ...+.....+..+.......-...-...+-.-.. ++.--
T Consensus 434 ~~d~K~VENcvCilRNLS-Yrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~-~pkG~ 511 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLS-YRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT-APKGS 511 (717)
T ss_pred cccchhHHHHHHHHhhcC-chhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc-CCCCc
Confidence 34578899999999999 655444322100 0000000011111111000000000000000011 22223
Q ss_pred HHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCC---ChHHHHHH-hhcCCHHHHHHHhhcCC
Q 001690 752 EVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPT---KPELQRQV-GKLEVYPSLIRVLSTGS 827 (1028)
Q Consensus 752 ~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~---~~~~~~~i-~~~~~i~~Lv~lL~s~~ 827 (1028)
.++++..+|.+.+.+|...+ ...++|+++|+|.++|+.. ....+..+ .++.+.|++++||+.++
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~------------n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~ 579 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSK------------NDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDD 579 (717)
T ss_pred eeeecHHHHHHHHHHHHHhc------------chHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCC
Confidence 56888889999999998531 4789999999999999753 34444445 88999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhc
Q 001690 828 SLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKA 907 (1028)
Q Consensus 828 ~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~ 907 (1028)
+.|.+.+|.+|.||+.+..+ + .++.-
T Consensus 580 ~~vv~s~a~~LrNls~d~rn------------k------------------------------------------~ligk 605 (717)
T KOG1048|consen 580 SDVVRSAAGALRNLSRDIRN------------K------------------------------------------ELIGK 605 (717)
T ss_pred chHHHHHHHHHhhhccCchh------------h------------------------------------------hhhhc
Confidence 99999999999999987655 1 12335
Q ss_pred CcchhHHhhhcCCC------ccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhc-CChhHHHHHHHHHHHH
Q 001690 908 DAVKPLVRNLNDME------SGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEK-GSLSAKTKALDLFQMI 980 (1028)
Q Consensus 908 gai~~Lv~lL~~~d------~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~~~~~A~~~l~~~ 980 (1028)
++++.||+.|.... .++..+++..|.++..... .+.+-+.+.+|++.|+-+..+ .++..-+.|.-.|..+
T Consensus 606 ~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~---~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 606 YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV---LNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH---HHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 67888888888533 5788889999999986532 345678899999999988874 4557778888888888
Q ss_pred Hhhhhhhhhhhccc--chHHHhhc
Q 001690 981 QKHTRITDTLLQRS--ERILIQLL 1002 (1028)
Q Consensus 981 ~~~~~~~~~~~~~~--~~~Lv~~l 1002 (1028)
....+.+..|...+ +.-++..+
T Consensus 683 W~y~eLh~~~kk~g~~q~~F~~~~ 706 (717)
T KOG1048|consen 683 WQYKELHFKLKKKGFKQQDFYDAL 706 (717)
T ss_pred HHHHHHhhhHhhhhhHHHHHHhHH
Confidence 88888887777666 33444433
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=7.8e-19 Score=202.33 Aligned_cols=349 Identities=15% Similarity=0.146 Sum_probs=281.3
Q ss_pred hhHHHHHhhccC--CchhHHHHHHHHhhhch-hhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCc---hhH
Q 001690 413 AVRRIVKQICKG--ETMPEAIEVLSELTKRE-TLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNT---HFA 486 (1028)
Q Consensus 413 ~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~---~n~ 486 (1028)
.++..+.+|... ..+-+|+..+..++..+ +.+..+-+ -|+|+.||.+|.+.+.+++..|+++|+||.... +|+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 467778888876 77888888899998754 67777777 699999999999999999999999999998653 589
Q ss_pred HHHHHcCCchhHHHhhc-CCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCC--------------CHHHH
Q 001690 487 VKMAEAGYFQPFVACFN-RGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSN--------------SPVCK 551 (1028)
Q Consensus 487 ~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~--------------~~~~~ 551 (1028)
..|.+.|+|+.++++|+ .++.++++..+.+|+||++++..+..|+.. ++..|..-+-.+ +..+-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence 99999999999999996 489999999999999999998888888775 567776644311 13456
Q ss_pred HHHHHHHHHHhc-CCHhHHHHHhCCCcHHHHHHHHhc----cCCChhHHHHHHHHHHHHHcCCC----------------
Q 001690 552 SACLKCIKTLIA-HSKMVKHLLLDPATIPLLLGLIQF----VRSDPHLKHEAAEILALMVGGCQ---------------- 610 (1028)
Q Consensus 552 ~~A~~aL~nL~~-~~~~~~~lv~~~g~v~~L~~lL~~----~~~~~~l~~~a~~~L~nL~~~~~---------------- 610 (1028)
.+++++|.|+++ ..+.++++-+..|.|..|+..++. ...+....++|..+|.||+..-.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 799999999988 458889999888999999999873 22235667999999999987311
Q ss_pred ------------------------------CCcccccccchhhcccccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCC-
Q 001690 611 ------------------------------HPQFELHHGLQELQSEHNVNVFLQLIA-NTERETKIQFLHLLVKLCYKS- 658 (1028)
Q Consensus 611 ------------------------------~~~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~- 658 (1028)
......+.+...+....+|..-+.+|. +..+.+.+.++++|.||+...
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 000001223334566667777677776 778899999999999999866
Q ss_pred ---HHHHHHH-HhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCC-----
Q 001690 659 ---EKVRNLI-ESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPD----- 729 (1028)
Q Consensus 659 ---~~~~~~i-~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~----- 729 (1028)
..++..+ ++ +.|+++|++|++.+++.+...++.+|+||+.+...+ +. +..++++.||+.|..+..
T Consensus 552 ~~~~~~~~~v~~k-ekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk---~l--igk~a~~~lv~~Lp~~~~~~~~s 625 (717)
T KOG1048|consen 552 TWSEYMRGAVFRK-EKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK---EL--IGKYAIPDLVRCLPGSGPSTSLS 625 (717)
T ss_pred cchhHHHhhhhhh-ccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh---hh--hhcchHHHHHHhCcCCCCCcCch
Confidence 4445544 77 899999999999999999999999999999543333 33 335789999999998765
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHh
Q 001690 730 VEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICS 769 (1028)
Q Consensus 730 ~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~ 769 (1028)
++...+++.+|.|+...+..+.+.+.+.++++.|+.+..+
T Consensus 626 edtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 626 EDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence 6777899999999998899999999999999999999885
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.74 E-value=1.3e-18 Score=147.33 Aligned_cols=72 Identities=40% Similarity=0.742 Sum_probs=62.7
Q ss_pred CCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHHHHhhh
Q 001690 257 PIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREI 328 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 328 (1028)
+|++|.||||+++|.|||+++|||||||.||++|+..++.+||.|++++...++.||..|++.|++|+..|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 478999999999999999999999999999999999878999999999999999999999999999998873
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.69 E-value=2.5e-15 Score=178.65 Aligned_cols=355 Identities=13% Similarity=0.157 Sum_probs=279.2
Q ss_pred hhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhc---CCCHHHHHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHHH
Q 001690 467 NLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFN---RGSQETRALMASALRNMR-LDESSIKTLKDRQFIHNVIQM 542 (1028)
Q Consensus 467 ~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~---~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~l 542 (1028)
..++.....+..++.+++.+..|...|.+|.|+++|. .++.+.+..|-.+|.||. +.++.+..-.+..+++.|=++
T Consensus 209 ~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQI 288 (2195)
T KOG2122|consen 209 DDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQI 288 (2195)
T ss_pred CCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999999994 335678888999999994 445544443443444443322
Q ss_pred ----------hcCCC--------HHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCC----------ChhH
Q 001690 543 ----------LSSNS--------PVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS----------DPHL 594 (1028)
Q Consensus 543 ----------L~s~~--------~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~----------~~~l 594 (1028)
+..+. ..-.-.|+.+|..++.+.+.+..|-+- |++..+-+|+..+.. ...+
T Consensus 289 raYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~EL-G~LqAIaeLl~vDh~mhgp~tnd~~~~aL 367 (2195)
T KOG2122|consen 289 RAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDHEMHGPETNDGECNAL 367 (2195)
T ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHh-hhHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 11111 112337788888888888888888888 999999999874311 1468
Q ss_pred HHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHH
Q 001690 595 KHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS-EKVRNLIESNNDAIT 673 (1028)
Q Consensus 595 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~ 673 (1028)
++++..+|.||..+....+. ......|++..+|..|.+...++....+.+|.||+... .+.++++++ .|-+.
T Consensus 368 RrYa~MALTNLTFGDv~NKa------~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE-~GsVt 440 (2195)
T KOG2122|consen 368 RRYAGMALTNLTFGDVANKA------TLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE-TGSVT 440 (2195)
T ss_pred HHHHHHHhhccccccccchh------hhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh-hhhHH
Confidence 89999999999998876543 45566799999999999999999999999999999866 566777888 89999
Q ss_pred HHHh-hhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC---CHHHHHHHHHHHhcCCC---C
Q 001690 674 QLFS-SLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP---DVEERSLAAGIISQLPK---D 746 (1028)
Q Consensus 674 ~Lv~-Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~---~~~~~~~a~~~L~nL~~---~ 746 (1028)
.|+. .++...+-.....+.+||||+ .|.. +....||...|++..||.+|.-.. ...+...|.|||.|... .
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLS-AHct-eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt 518 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLS-AHCT-ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIAT 518 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhh-hccc-ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhc
Confidence 9987 466666667778889999999 4433 333445666899999999998763 23455788899988754 4
Q ss_pred ChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcC
Q 001690 747 DIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTG 826 (1028)
Q Consensus 747 ~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~ 826 (1028)
....++.+.+.+.+..|+..|++. .-.+..|++|+|+|+.+ .+++-|+.+.+.|.++.|..|+++.
T Consensus 519 ~E~yRQILR~~NCLq~LLQ~LKS~-------------SLTiVSNaCGTLWNLSA-R~p~DQq~LwD~gAv~mLrnLIhSK 584 (2195)
T KOG2122|consen 519 CEDYRQILRRHNCLQTLLQHLKSH-------------SLTIVSNACGTLWNLSA-RSPEDQQMLWDDGAVPMLRNLIHSK 584 (2195)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhc-------------ceEEeecchhhhhhhhc-CCHHHHHHHHhcccHHHHHHHHhhh
Confidence 677889999999999999999972 36677899999999986 6888899999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhhcc
Q 001690 827 SSLAKQRAASALADLSQST 845 (1028)
Q Consensus 827 ~~~vk~~Aa~aL~~ls~~~ 845 (1028)
+..+-+-+|.||.||....
T Consensus 585 hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 585 HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhHHHHHHHHhcCC
Confidence 9999999999999997765
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=4.5e-15 Score=176.50 Aligned_cols=349 Identities=16% Similarity=0.174 Sum_probs=276.6
Q ss_pred HHHHHHHHhcCChhhhHHHHhhccHHHHHHHHhc----CHHHHHHHHHHHHHHhcccHHHHHHHHH---hchhHHHHHhh
Q 001690 349 SALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD----TRLSTEAILKCLYFLAKYSDIHKEAIVE---AGAVRRIVKQI 421 (1028)
Q Consensus 349 ~al~~L~~l~~~~~~r~~i~~~g~ip~Lv~lL~s----~~~~~~~A~~~L~~Ls~~~~~~k~~i~~---~g~i~~lv~~L 421 (1028)
.-.+.+..+..+++.-..+...|.+|.|+++|-- +...+..|-.+|.|+.....+.+..-.+ ...++.|....
T Consensus 213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC 292 (2195)
T KOG2122|consen 213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYC 292 (2195)
T ss_pred HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 3445566666777777778889999999999965 4678889999999997765443332222 22233222221
Q ss_pred -------cc-C--------Cchh-HHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhc-----C-------ChhhHHHH
Q 001690 422 -------CK-G--------ETMP-EAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHN-----N-------NPNLSQKA 472 (1028)
Q Consensus 422 -------~~-~--------e~~~-~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~-----~-------~~~~~~~a 472 (1028)
.. + +-+- .|+.+|..+|-++++|..+.. -|++.++-+|+.- + ...++..|
T Consensus 293 ~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa 371 (2195)
T KOG2122|consen 293 ETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYA 371 (2195)
T ss_pred HHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 11 1 2333 677888899999999999998 5988888888762 2 23578899
Q ss_pred HHHHhccccCc-hhHHHHH-HcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc--CcchHHHHhhCCcHHHHHHH-hcCCC
Q 001690 473 HDVLQNLSHNT-HFAVKMA-EAGYFQPFVACFNRGSQETRALMASALRNMRL--DESSIKTLKDRQFIHNVIQM-LSSNS 547 (1028)
Q Consensus 473 ~~~L~nL~~~~-~n~~~i~-~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~l-L~s~~ 547 (1028)
..+|-||...+ .||..++ ..|.+..+|..|.+..+++..-.+.+|.||+- +...++.+.+.|-+..|+.. |+...
T Consensus 372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 99999999887 5788887 55999999999999998999999999999974 33456666778888888874 55666
Q ss_pred HHHHHHHHHHHHHHhcCC-HhHHHHHhCCCcHHHHHHHHhccC--CChhHHHHHHHHHHHHHcCCCCCcccccccchhhc
Q 001690 548 PVCKSACLKCIKTLIAHS-KMVKHLLLDPATIPLLLGLIQFVR--SDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQ 624 (1028)
Q Consensus 548 ~~~~~~A~~aL~nL~~~~-~~~~~lv~~~g~v~~L~~lL~~~~--~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~ 624 (1028)
....+..+.|||||+.+. +|+..+..-.|++..|+.+|.... .-..+.+.+-.||.|.+..-...+. +++.+.
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~----yRQILR 527 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED----YRQILR 527 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch----HHHHHH
Confidence 678889999999998875 899999888899999999998652 2256678899999998874322222 567899
Q ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCC
Q 001690 625 SEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPN 703 (1028)
Q Consensus 625 ~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~ 703 (1028)
+.+++..|+.+|++.+-.+..+++++|+||...++.-+.++++ .|+++.|..|+.+.+..+-+-++.+|.||-..++.
T Consensus 528 ~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 528 RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999865543
No 16
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.9e-13 Score=147.21 Aligned_cols=388 Identities=13% Similarity=0.186 Sum_probs=285.7
Q ss_pred hhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcC
Q 001690 466 PNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSS 545 (1028)
Q Consensus 466 ~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s 545 (1028)
+.....|+..|.||+.+-..-.+|.+.++|..||+.|...+.++.......|..|+...+|+..+.+.|.|..|+++...
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 34556788899999998888888999999999999998888888888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcc
Q 001690 546 NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQS 625 (1028)
Q Consensus 546 ~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~ 625 (1028)
.++..+...+..|.|++-+...+.+++.. |.+|.|..++.+.+. +..|..+|.+++.... . ...+.-
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~-GllP~l~~ll~~d~~----~~iA~~~lYh~S~dD~---~-----K~Mfay 423 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNG-GLLPHLASLLDSDTK----HGIALNMLYHLSCDDD---A-----KAMFAY 423 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhc-cchHHHHHHhCCccc----chhhhhhhhhhccCcH---H-----HHHHHH
Confidence 99999999999999999999999999999 999999999987643 3678889999987542 1 234556
Q ss_pred cccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhh-hcCCChhHHHHHHHHHHHhcCCCCC
Q 001690 626 EHNVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSS-LDSDQPVVRRWAMRLIHCISEGNPN 703 (1028)
Q Consensus 626 ~g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~L-l~~~~~~v~~~A~~~L~~Ls~~~~~ 703 (1028)
..+|+.+...+- ..+.++-...+..-.|||.+..++ ..+.+ ..|+..|+.. +++.+.-+ .++++++| .|.+
T Consensus 424 Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNa-Qlvce-GqgL~~LM~ra~k~~D~lL----mK~vRniS-qHeg 496 (791)
T KOG1222|consen 424 TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNA-QLVCE-GQGLDLLMERAIKSRDLLL----MKVVRNIS-QHEG 496 (791)
T ss_pred HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccc-eEEec-CcchHHHHHHHhcccchHH----HHHHHHhh-hccc
Confidence 678888888755 445555555555556888766443 34555 6788888864 45555432 46889999 4554
Q ss_pred CCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcc
Q 001690 704 GVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQ 783 (1028)
Q Consensus 704 ~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~ 783 (1028)
..-... -..++.|..++...+++.....++|+++||+..+-+....+.+...||++-..|.. |..
T Consensus 497 ~tqn~F----idyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~p------ga~----- 561 (791)
T KOG1222|consen 497 ATQNMF----IDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQP------GAD----- 561 (791)
T ss_pred hHHHHH----HHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcC------Ccc-----
Confidence 221111 14577888999888877777999999999999899999999999999999999985 321
Q ss_pred hhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcC--CHHHHHHHHHHHHhhhhcccccccccccccccccc
Q 001690 784 DASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTG--SSLAKQRAASALADLSQSTSVSVSNATLTAKQTKT 861 (1028)
Q Consensus 784 ~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~--~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~ 861 (1028)
..++.-..+-++..++ .+......+..+|+|+.|++||+.. +.+...........+.... +++.
T Consensus 562 eddLvL~~vi~~GT~a--~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--------~tr~---- 627 (791)
T KOG1222|consen 562 EDDLVLQIVIACGTMA--RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--------LTRR---- 627 (791)
T ss_pred chhhhhHHHHHhhhhh--hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--------HHHH----
Confidence 1223333333333333 4566666678899999999999853 3333322333333332220 0000
Q ss_pred cCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccc
Q 001690 862 LMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHST 941 (1028)
Q Consensus 862 ~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~ 941 (1028)
.-+-+...=.-|+.+..+.|.++++.+-.+|--++.-++.
T Consensus 628 ----------------------------------------~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 628 ----------------------------------------LMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred ----------------------------------------HHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 0011233345789999999999999999999888765554
Q ss_pred h
Q 001690 942 L 942 (1028)
Q Consensus 942 ~ 942 (1028)
|
T Consensus 668 W 668 (791)
T KOG1222|consen 668 W 668 (791)
T ss_pred H
Confidence 4
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=6e-13 Score=138.11 Aligned_cols=335 Identities=12% Similarity=0.205 Sum_probs=262.3
Q ss_pred HHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc----CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhcc
Q 001690 349 SALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD----TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICK 423 (1028)
Q Consensus 349 ~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s----~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~ 423 (1028)
.-++.++.-| .+..+|..-...|+.|.++.++.. +..+..+++.+|..+.... ..+....+...++..|..
T Consensus 81 ~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q----pdl~da~g~~vvv~lL~~ 156 (461)
T KOG4199|consen 81 ELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ----PDLFDAEAMAVVLKLLAL 156 (461)
T ss_pred HHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC----cchhccccHHHHHHHHhc
Confidence 3344455455 556667767778888888766644 6667777888877776554 455667788888999887
Q ss_pred C-CchhHHHHHHHHh---h-hchhhhhhhhcccchHHHHHHHhh-cCChhhHHHHHHHHhccccCch----------hHH
Q 001690 424 G-ETMPEAIEVLSEL---T-KRETLGEKIGNTKDCITIMVSLLH-NNNPNLSQKAHDVLQNLSHNTH----------FAV 487 (1028)
Q Consensus 424 ~-e~~~~A~~~L~~L---s-~~~~~~~~i~~~~g~I~~Lv~lL~-~~~~~~~~~a~~~L~nL~~~~~----------n~~ 487 (1028)
. +..+--...+..+ + .++.+|..+.+ .+.+|.+...|. .+..++.+.+.++++-|...++ ...
T Consensus 157 ~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr 235 (461)
T KOG4199|consen 157 KVESEEVTLLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHAR 235 (461)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHH
Confidence 6 4444333334333 3 36778888888 589998886665 4555788889999998876653 345
Q ss_pred HHHHcCCchhHHHhhcCC-CHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCC-HH---HHHHHHHHHHHHh
Q 001690 488 KMAEAGYFQPFVACFNRG-SQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNS-PV---CKSACLKCIKTLI 562 (1028)
Q Consensus 488 ~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~---~~~~A~~aL~nL~ 562 (1028)
.++..|+...|++.|..+ +|++......+|..|+..++-.+.|.+.|++..|++++.+.+ .. .-+.++..|..|+
T Consensus 236 ~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA 315 (461)
T KOG4199|consen 236 TIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA 315 (461)
T ss_pred HHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh
Confidence 566788999999999543 467778888999999999999999999999999999998633 33 3467888899999
Q ss_pred cCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcC-C-C
Q 001690 563 AHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIAN-T-E 640 (1028)
Q Consensus 563 ~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~-~-~ 640 (1028)
.+++++..+++. |+.+.++.++....+++.+-+.+..++.-||-..++.. ..+.+.|+-...++-++. + .
T Consensus 316 G~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhs-------a~~ie~G~a~~avqAmkahP~~ 387 (461)
T KOG4199|consen 316 GSDSVKSTIVEK-GGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHS-------AKAIEAGAADLAVQAMKAHPVA 387 (461)
T ss_pred CCCchHHHHHHh-cChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchH-------HHHHhcchHHHHHHHHHhCcHH
Confidence 999999999999 99999999998887778888888888999998766543 467788888888888873 3 3
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 641 RETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 641 ~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
..+|.++..++.|+...+.+.++.+.. .|++.|+......++.....|-.+|+-|-
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~--~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLA--NGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHh--ccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 468999999999999999888888886 89999999999999999999999999886
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.2e-12 Score=135.82 Aligned_cols=304 Identities=14% Similarity=0.208 Sum_probs=242.1
Q ss_pred CCChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc---CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHH
Q 001690 341 SDDQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD---TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRR 416 (1028)
Q Consensus 341 s~~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s---~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~ 416 (1028)
+++.....+++..|-.+. ..|+- .++.+...++++|.. +.++-...+..+..-+...+.||..+++.+.++.
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L 193 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL 193 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 445556667777777766 44443 345677778888864 6667777777777777777789999999999999
Q ss_pred HHHhhccC---CchhHHHHHHHHhhhchh----------hhhhhhcccchHHHHHHHhhcC-ChhhHHHHHHHHhccccC
Q 001690 417 IVKQICKG---ETMPEAIEVLSELTKRET----------LGEKIGNTKDCITIMVSLLHNN-NPNLSQKAHDVLQNLSHN 482 (1028)
Q Consensus 417 lv~~L~~~---e~~~~A~~~L~~Ls~~~~----------~~~~i~~~~g~I~~Lv~lL~~~-~~~~~~~a~~~L~nL~~~ 482 (1028)
+...|... ...+.+.++++-|...++ +.+.|.. .|.+..|++.++-+ +|.....+..+|..|+..
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99888765 467778888888855443 4556666 57899999999853 688899999999999999
Q ss_pred chhHHHHHHcCCchhHHHhhcC-CCHH---HHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhc--CCCHHHHHHHHH
Q 001690 483 THFAVKMAEAGYFQPFVACFNR-GSQE---TRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLS--SNSPVCKSACLK 556 (1028)
Q Consensus 483 ~~n~~~i~~~G~v~~Lv~lL~~-~~~~---~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~ 556 (1028)
++.+..+++.|++..|++++.+ +... +...++..|..|+++++++..|++.|+.+.++.++. +.+|.+.+.+..
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999999966 3333 446677888999999999999999999999999875 678999999999
Q ss_pred HHHHHhcC-CHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHH
Q 001690 557 CIKTLIAH-SKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQL 635 (1028)
Q Consensus 557 aL~nL~~~-~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~l 635 (1028)
++.-||.. +++...+++. |+-...++.++.......+++++.+.+.|++..+..+. .+.-..++..|+..
T Consensus 353 ~i~~l~LR~pdhsa~~ie~-G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~--------~~~l~~GiE~Li~~ 423 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEA-GAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR--------TILLANGIEKLIRT 423 (461)
T ss_pred HHHHHHhcCcchHHHHHhc-chHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc--------chHHhccHHHHHHH
Confidence 99999976 5667777777 99999999999876668899999999999998665433 34455678888888
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCC
Q 001690 636 IANTERETKIQFLHLLVKLCYKS 658 (1028)
Q Consensus 636 L~~~~~~~~~~a~~aL~~L~~~~ 658 (1028)
-...++.....+-.+|.-|..+.
T Consensus 424 A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 424 AKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHhcCccHHHHHHHHHHhcCcch
Confidence 88888888877777887776544
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-12 Score=138.05 Aligned_cols=400 Identities=11% Similarity=0.082 Sum_probs=297.7
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc----CH----HHHHHHHHHHHHHhccc
Q 001690 331 RFQNAIIKINSDDQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD----TR----LSTEAILKCLYFLAKYS 401 (1028)
Q Consensus 331 ~i~~~~~~L~s~~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s----~~----~~~~~A~~~L~~Ls~~~ 401 (1028)
.++.+++.++|.+.+...++.+.|.++| .+.++|..+.+.|+-..++..|+. +. ..-.-+...|.|...++
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~ 167 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDS 167 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCc
Confidence 3556677778888889999999999999 999999999999997777777765 21 33344567899999999
Q ss_pred HHHHHHHHHhchhHHHHHhhccC----CchhHHHHHHHHhhhc--hhhhhhhhcccchHHHHHHHhhc-CChhhHHHHHH
Q 001690 402 DIHKEAIVEAGAVRRIVKQICKG----ETMPEAIEVLSELTKR--ETLGEKIGNTKDCITIMVSLLHN-NNPNLSQKAHD 474 (1028)
Q Consensus 402 ~~~k~~i~~~g~i~~lv~~L~~~----e~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~I~~Lv~lL~~-~~~~~~~~a~~ 474 (1028)
++.+...++.|.++.++..+--+ +..+......++|... +.......+ ......|++++.+ -.++..+-..+
T Consensus 168 ~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d-~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 168 RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKD-CSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhcc-chHHHHHHHHHHHhhccchhhHHHH
Confidence 88999999999999999888655 3445555555666432 223333344 5677788888874 45677777889
Q ss_pred HHhccccCchhHHHHHHcCCchhHHHhhcC-CCH----H---HHHHHHHHHHHhhcCcchHHHHhhCC-cHHHHHHHhcC
Q 001690 475 VLQNLSHNTHFAVKMAEAGYFQPFVACFNR-GSQ----E---TRALMASALRNMRLDESSIKTLKDRQ-FIHNVIQMLSS 545 (1028)
Q Consensus 475 ~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~----~---~~~~a~~~L~~La~~~~~~~~i~~~g-~i~~Lv~lL~s 545 (1028)
.|...+.++..+..++++|.+..++.++.. .+. + .-..++....-|...+++...+...+ .+..++.-++|
T Consensus 247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S 326 (604)
T KOG4500|consen 247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS 326 (604)
T ss_pred HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC
Confidence 999999999999999999999999998854 211 1 12223333444456677777777666 78888999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccC---CChhHHHHHHHHHHHHHcCCCCCcccccccchh
Q 001690 546 NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVR---SDPHLKHEAAEILALMVGGCQHPQFELHHGLQE 622 (1028)
Q Consensus 546 ~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~---~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 622 (1028)
.+......+.-+++|+++.+.++..+++. |.+..|++++.... .+...+..+.++|+|+.--.. +...
T Consensus 327 ~d~~l~t~g~LaigNfaR~D~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--------nka~ 397 (604)
T KOG4500|consen 327 DDSNLITMGSLAIGNFARRDDICIQLVQK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS--------NKAH 397 (604)
T ss_pred CchhHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC--------chhh
Confidence 99999999999999999999999999999 99999999997522 225667788899999987443 3457
Q ss_pred hcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCCh-hHHHHHHHHHHHhcCCC
Q 001690 623 LQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQP-VVRRWAMRLIHCISEGN 701 (1028)
Q Consensus 623 l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~-~v~~~A~~~L~~Ls~~~ 701 (1028)
+...|+++.++..++..+|.++...++.+..+-..-+.+...+..+...+..|+.+.++++- .+--.+-+++..|-+..
T Consensus 398 ~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs 477 (604)
T KOG4500|consen 398 FAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHS 477 (604)
T ss_pred ccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhh
Confidence 89999999999999999999999999988877665554444444436778889999988876 36666666666665332
Q ss_pred CCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhc
Q 001690 702 PNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQ 742 (1028)
Q Consensus 702 ~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~n 742 (1028)
-..++...+ ...|+++.+|.++....- ..+..|+-++..
T Consensus 478 ~~kdv~~tv-pksg~ik~~Vsm~t~~hi-~mqnEalVal~~ 516 (604)
T KOG4500|consen 478 KYKDVILTV-PKSGGIKEKVSMFTKNHI-NMQNEALVALLS 516 (604)
T ss_pred HhhhhHhhc-cccccHHHHHHHHHHhhH-HHhHHHHHHHHH
Confidence 223444443 345789999999887764 334444444443
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.56 E-value=2.2e-15 Score=124.97 Aligned_cols=63 Identities=40% Similarity=0.783 Sum_probs=60.0
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHH
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEW 323 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 323 (1028)
+|.||||+++|+|||+++|||+||+.||.+|++. +.+||.|++++...+++||..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5889999999999999999999999999999986 77899999999999999999999999988
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.8e-11 Score=129.78 Aligned_cols=384 Identities=12% Similarity=0.138 Sum_probs=280.4
Q ss_pred chhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCC
Q 001690 426 TMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRG 505 (1028)
Q Consensus 426 ~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~ 505 (1028)
..+.|.-.|.+|+.+-..-.++.. ...+..||+.|...+.+........|..|+...+|+..|.+.|+|..|++++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrr-kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRR-KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 345677888899887777777777 5889999999998888899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHH
Q 001690 506 SQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLI 585 (1028)
Q Consensus 506 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL 585 (1028)
.++++......|.|++.+...+..+++.|.+|.|+.+|.+.+. +.-|+..|+.++.++..+..+... .+|+.++..+
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayT-dci~~lmk~v 434 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYT-DCIKLLMKDV 434 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999986543 456889999999988777766665 8999999988
Q ss_pred hccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCHHHHHH
Q 001690 586 QFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQL-IANTERETKIQFLHLLVKLCYKSEKVRNL 664 (1028)
Q Consensus 586 ~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 664 (1028)
..++.. .+--...+...|||-... +.+.+.+-.++..|+.. +++.++- ..+.+.+++.+....+.+
T Consensus 435 ~~~~~~-~vdl~lia~ciNl~lnkR--------NaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~ 501 (791)
T KOG1222|consen 435 LSGTGS-EVDLALIALCINLCLNKR--------NAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNM 501 (791)
T ss_pred HhcCCc-eecHHHHHHHHHHHhccc--------cceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHH
Confidence 877642 322333344467776433 34567777778888776 3344442 345677888877655555
Q ss_pred HHhhhchHHHHHhhhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCC-HHHHHHHHHHHhc
Q 001690 665 IESNNDAITQLFSSLDSDQP-VVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPD-VEERSLAAGIISQ 742 (1028)
Q Consensus 665 i~~~~g~v~~Lv~Ll~~~~~-~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~-~~~~~~a~~~L~n 742 (1028)
+.. -+..|...++.+++ .....+...|.+|.- ++-.+...+ .....+|.+-..|..+-+ ++.....+-+++.
T Consensus 502 Fid---yvgdLa~i~~nd~~E~F~~EClGtlanL~v--~dldw~~il-q~~~LvPw~k~~L~pga~eddLvL~~vi~~GT 575 (791)
T KOG1222|consen 502 FID---YVGDLAGIAKNDNSESFGLECLGTLANLKV--TDLDWAKIL-QSENLVPWMKTQLQPGADEDDLVLQIVIACGT 575 (791)
T ss_pred HHH---HHHHHHHHhhcCchHHHHHHHHHHHhhccc--CCCCHHHHH-hhccccHHHHHhhcCCccchhhhhHHHHHhhh
Confidence 543 56667777777665 566677888888872 232333322 235667777777776643 2333444445555
Q ss_pred CCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHH-HHHH
Q 001690 743 LPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYP-SLIR 821 (1028)
Q Consensus 743 L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~-~Lv~ 821 (1028)
++. +......+..+|.++.++.+|+.-++ +.++....+-+...+.. +...+..+++....+ .+++
T Consensus 576 ~a~-d~~cA~Lla~a~~i~tlieLL~a~Qe-----------DDEfV~QiiyVF~Q~l~--He~tr~~miket~~~AylID 641 (791)
T KOG1222|consen 576 MAR-DLDCARLLAPAKLIDTLIELLQACQE-----------DDEFVVQIIYVFLQFLK--HELTRRLMIKETALGAYLID 641 (791)
T ss_pred hhh-hhHHHHHhCccccHHHHHHHHHhhcc-----------cchHHHHHHHHHHHHHH--HHHHHHHHHhhccchHHHHH
Confidence 554 67777889999999999999996322 24444444444444431 233444444444444 7899
Q ss_pred HhhcCCHHHHHHHHHHHHhhhhccc
Q 001690 822 VLSTGSSLAKQRAASALADLSQSTS 846 (1028)
Q Consensus 822 lL~s~~~~vk~~Aa~aL~~ls~~~~ 846 (1028)
|+...+.++++-+-.+|-.++....
T Consensus 642 LMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 642 LMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhhH
Confidence 9999999999988888888776543
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.45 E-value=2.6e-10 Score=134.85 Aligned_cols=374 Identities=11% Similarity=0.123 Sum_probs=271.2
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhchhhhhhhhccc
Q 001690 375 KLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEKIGNTK 451 (1028)
Q Consensus 375 ~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i~~~~ 451 (1028)
.+...|.+ +.+.-..++.+|..+-... ..... ..+..+.+...|.+. .++..++..|..+..+++....+....
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 36677777 6666677777777776544 22222 345566777777777 889999999999887666555555558
Q ss_pred chHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh-cCcchHHHH
Q 001690 452 DCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR-LDESSIKTL 530 (1028)
Q Consensus 452 g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i 530 (1028)
+.++.++.++.+++..+...|+.+|.+++.++.....++..+.++.|..++...++.++.++..++.+++ .+++....+
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999988888889999999999998888899999999999996 467777888
Q ss_pred hhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhH----HHHHHHHHHHHH
Q 001690 531 KDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHL----KHEAAEILALMV 606 (1028)
Q Consensus 531 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l----~~~a~~~L~nL~ 606 (1028)
.+.|.++.++..|.+.|.-+|.+|+.+|..|+..+.+.+.+.+. |+++.|..++.....++.+ --.......+++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~-gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQ-GIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhC-CHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 88999999999999999999999999999999988999999998 9999999999876544311 112223455566
Q ss_pred cCCCCCcccccccchhhc-ccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhch----HHHHHhhhcC
Q 001690 607 GGCQHPQFELHHGLQELQ-SEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDA----ITQLFSSLDS 681 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~-~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~----v~~Lv~Ll~~ 681 (1028)
...+ .. .+. -...+..+.+++.+.++..+..|+.++..+++..+....+.....+. +........+
T Consensus 278 ~~~~--~~-------v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~ 348 (503)
T PF10508_consen 278 RVSP--QE-------VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS 348 (503)
T ss_pred hcCh--HH-------HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC
Confidence 5311 11 110 02345567777889999999999999999998775544441221334 4444455667
Q ss_pred CChhHHHHHHHHHHHhcCCCCC---CCC-------CCCCCCCcccHH-HHHHhccCCCCHHHHHHHHHHHhcCCCCChHH
Q 001690 682 DQPVVRRWAMRLIHCISEGNPN---GVP-------LPPSPGKETAIN-TVAAIFTCSPDVEERSLAAGIISQLPKDDIYV 750 (1028)
Q Consensus 682 ~~~~v~~~A~~~L~~Ls~~~~~---~~i-------~~~~~~~~~~i~-~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~ 750 (1028)
+..++|..+..+|.++-..... +++ ... ...+... .++.++..+ =.+.+.++..+|..++.+.=.+
T Consensus 349 ~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~--~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~~Wg~ 425 (503)
T PF10508_consen 349 GSTELKLRALHALASILTSGTDRQDNDILSITESWYES--LSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQPWGQ 425 (503)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH--hcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcCHHHH
Confidence 7779999999999999422221 111 111 1122333 556666554 2489999999999999865555
Q ss_pred HHHHHhccchHHHH
Q 001690 751 DEVLCKSEALKAIH 764 (1028)
Q Consensus 751 ~~~l~~~g~v~~L~ 764 (1028)
+......|.+..++
T Consensus 426 ~~i~~~~gfie~ll 439 (503)
T PF10508_consen 426 REICSSPGFIEYLL 439 (503)
T ss_pred HHHHhCccHHhhhc
Confidence 44444455444444
No 23
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.44 E-value=3.7e-12 Score=134.93 Aligned_cols=193 Identities=20% Similarity=0.221 Sum_probs=169.0
Q ss_pred HHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchh
Q 001690 409 VEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHF 485 (1028)
Q Consensus 409 ~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n 485 (1028)
.+.+.++.++.+|... ..++.+..++.+.+..+.++..|.+ .|+++.+..+|.++++.++..|+.+|.|++.+.+|
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4577889999999865 6899999999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHcCCchhHHHhhcC--CCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 001690 486 AVKMAEAGYFQPFVACFNR--GSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIA 563 (1028)
Q Consensus 486 ~~~i~~~G~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~ 563 (1028)
...+-. .++.+.+...+ -+.++|..++.+|.+|+..+++...+.. .+|.++.+|.+|+...|.+++++|.|||.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 987743 57777776543 3678999999999999988888777764 69999999999999999999999999999
Q ss_pred CCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcC
Q 001690 564 HSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGG 608 (1028)
Q Consensus 564 ~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~ 608 (1028)
++...+.++.. +++..++.++....+ ..+...+...+.|+..+
T Consensus 164 np~~~~~Ll~~-q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NPDMTRELLSA-QVLSSFLSLFNSSES-KENLLRVLTFFENINEN 206 (254)
T ss_pred CHHHHHHHHhc-cchhHHHHHHccCCc-cHHHHHHHHHHHHHHHh
Confidence 99999999999 899999999987654 45557778889999764
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.43 E-value=5.2e-12 Score=133.88 Aligned_cols=195 Identities=16% Similarity=0.185 Sum_probs=168.4
Q ss_pred HHcCCchhHHHhhc-CCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhH
Q 001690 490 AEAGYFQPFVACFN-RGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMV 568 (1028)
Q Consensus 490 ~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~ 568 (1028)
.+++-++.|+.+|. +.+|.+++.+..+|++.+..+.++..|.+.|+++.+..+|.++++.+|+.|+++|.|++.+.++.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 56677899999996 66899999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHH
Q 001690 569 KHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFL 648 (1028)
Q Consensus 569 ~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~ 648 (1028)
..+ +. .++.+.+.+.+...+..++..+..+|.||+..... ...+ .+.++.++.+|.+++..+|.+++
T Consensus 89 ~~I-k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--------~~~l--~~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 89 EQI-KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--------HHML--ANYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred HHH-HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--------hhhH--HhhHHHHHHHHHcCChHHHHHHH
Confidence 865 43 68888887776655567888889999999764322 2233 34799999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCC-ChhHHHHHHHHHHHhcC
Q 001690 649 HLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSD-QPVVRRWAMRLIHCISE 699 (1028)
Q Consensus 649 ~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~-~~~v~~~A~~~L~~Ls~ 699 (1028)
++|.+|+.++...+.++.. +++..++.|+..+ +.++...+...+.||.+
T Consensus 156 k~L~nLS~np~~~~~Ll~~--q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 156 KVLVNLSENPDMTRELLSA--QVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHhccCHHHHHHHHhc--cchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9999999999888888876 8999999999887 45889999999999974
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.43 E-value=1.7e-10 Score=136.30 Aligned_cols=362 Identities=15% Similarity=0.149 Sum_probs=265.9
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHh
Q 001690 334 NAIIKINSDDQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEA 411 (1028)
Q Consensus 334 ~~~~~L~s~~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~ 411 (1028)
.+...|..+++..+..++..|+.+. .+......+.+.+.++.++..|.+ +..+...|..+|.+++... ..-+.+...
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~ 159 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDS 159 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCc
Confidence 4556677788888888999999988 555556667788999999999999 9999999999999999988 556667777
Q ss_pred chhHHHHHhhccC--CchhHHHHHHHHhhhc-hhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHH
Q 001690 412 GAVRRIVKQICKG--ETMPEAIEVLSELTKR-ETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVK 488 (1028)
Q Consensus 412 g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~ 488 (1028)
+.+..+..++... ..|-.+..++.+++.. ++....+.. .|.++.++..|.++|.-++.+++..|..|+..+.+...
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~y 238 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQY 238 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHH
Confidence 7789999999884 6788888899999764 566666666 79999999999999999999999999999999999999
Q ss_pred HHHcCCchhHHHhhcCCCHH-----HHH-HHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 001690 489 MAEAGYFQPFVACFNRGSQE-----TRA-LMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLI 562 (1028)
Q Consensus 489 i~~~G~v~~Lv~lL~~~~~~-----~~~-~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~ 562 (1028)
+.+.|+++.|+.++.+...+ +.. ......++++........-.-...+..|.+++.+.++..+..|..+++.++
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 99999999999999533221 111 122455666553221111111335566677788999999999999999999
Q ss_pred cCCHhHHHH-HhCCCcHHHHHHHHhccC--CChhHHHHHHHHHHHHHcCCCCCcc--ccc--ccchhhcccccHH-HHHH
Q 001690 563 AHSKMVKHL-LLDPATIPLLLGLIQFVR--SDPHLKHEAAEILALMVGGCQHPQF--ELH--HGLQELQSEHNVN-VFLQ 634 (1028)
Q Consensus 563 ~~~~~~~~l-v~~~g~v~~L~~lL~~~~--~~~~l~~~a~~~L~nL~~~~~~~~~--~~~--~~~~~l~~~g~v~-~Lv~ 634 (1028)
+..+.+..+ ....+.++..+....... ....++..+..+|.++.....+... +.. +..-.....+... .+++
T Consensus 319 st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~ 398 (503)
T PF10508_consen 319 STVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMS 398 (503)
T ss_pred CCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 998888888 555356666666554322 2256889999999999765443221 000 0000122233344 7888
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhH---HHHHHHHHHHhc
Q 001690 635 LIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVV---RRWAMRLIHCIS 698 (1028)
Q Consensus 635 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v---~~~A~~~L~~Ls 698 (1028)
+++.+=|+++..+.+.|..|+..+-..+.++.. .|.+..|+.=-...+.+. |-..+++|....
T Consensus 399 ~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~-~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 399 LLKQPFPELRCAAYRLLQALAAQPWGQREICSS-PGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred HhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhC-ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 888888999999999999999999888887777 787777765444444444 444444444333
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.42 E-value=7.3e-11 Score=126.44 Aligned_cols=387 Identities=11% Similarity=0.075 Sum_probs=281.2
Q ss_pred HhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---------CchhHHHHHHHHh
Q 001690 368 AKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---------ETMPEAIEVLSEL 437 (1028)
Q Consensus 368 ~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---------e~~~~A~~~L~~L 437 (1028)
+.+|+++.|.+..+| +..+-.+..++|.|++.+++++|..+.+.|+-.-++..|+.. +.-.-+...|.|-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 457899999999999 899999999999999999999999999988877778887764 1223344555554
Q ss_pred h-hchhhhhhhhcccchHHHHHHHhhc--CChhhHHHHHHHHhccccCc-hhH-HHHHHcCCchhHHHhhc-CCCHHHHH
Q 001690 438 T-KRETLGEKIGNTKDCITIMVSLLHN--NNPNLSQKAHDVLQNLSHNT-HFA-VKMAEAGYFQPFVACFN-RGSQETRA 511 (1028)
Q Consensus 438 s-~~~~~~~~i~~~~g~I~~Lv~lL~~--~~~~~~~~a~~~L~nL~~~~-~n~-~~i~~~G~v~~Lv~lL~-~~~~~~~~ 511 (1028)
. .+++++....+ .|.++.|+..+-- .+....+......+||.+.. ++. ....+...+.-++++|. .-+++..+
T Consensus 164 ~l~~~~l~aq~~~-~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 164 ILDSRELRAQVAD-AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hCCcHHHHHHHHh-cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 3 36688888888 7999999998863 34455566666667765432 332 33345567777888883 34556777
Q ss_pred HHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcC-CCHHHHHHHH-------HHHHHHhcCCHhHHHHHhCCCcHHHHHH
Q 001690 512 LMASALRNMRLDESSIKTLKDRQFIHNVIQMLSS-NSPVCKSACL-------KCIKTLIAHSKMVKHLLLDPATIPLLLG 583 (1028)
Q Consensus 512 ~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~-------~aL~nL~~~~~~~~~lv~~~g~v~~L~~ 583 (1028)
-+..+|+..+.++..+-.+++.|.+..++++++. .+..-++.+. ....-|...++.-+.+...+..+..+..
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 7788999999999999999999999999999985 3322233332 2223334455666677776237888888
Q ss_pred HHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcCC
Q 001690 584 LIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIAN-----TERETKIQFLHLLVKLCYKS 658 (1028)
Q Consensus 584 lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~ 658 (1028)
.+.+.+ ..+.-.++-++.|+++.+. ....+.+.+.+..|+++|.. ++.+.+..++.+|.|+..--
T Consensus 323 w~~S~d--~~l~t~g~LaigNfaR~D~--------~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 323 WFRSDD--SNLITMGSLAIGNFARRDD--------ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred HhcCCc--hhHHHHHHHHHHhhhccch--------HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 888654 4666788888999998653 35678899999999999863 45678889999999998755
Q ss_pred HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHH
Q 001690 659 EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAG 738 (1028)
Q Consensus 659 ~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~ 738 (1028)
++ +..+.. +|..+.++..++...|.+.-.-...++-+.. ... .++..+.-....+..||..-.+++-..+.....+
T Consensus 393 ~n-ka~~~~-aGvteaIL~~lk~~~ppv~fkllgTlrM~~d-~qe-~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnR 468 (604)
T KOG4500|consen 393 SN-KAHFAP-AGVTEAILLQLKLASPPVTFKLLGTLRMIRD-SQE-YIACELAKNPELFEKLVDWSKSPDFAGVAGESNR 468 (604)
T ss_pred Cc-hhhccc-cchHHHHHHHHHhcCCcchHHHHHHHHHHHh-chH-HHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhH
Confidence 43 445566 7999999999999998887766667776662 221 2333332334567788888777775556666677
Q ss_pred HHhcCCCC--ChHHHHHHHhccchHHHHHHHHh
Q 001690 739 IISQLPKD--DIYVDEVLCKSEALKAIHEVICS 769 (1028)
Q Consensus 739 ~L~nL~~~--~~~~~~~l~~~g~v~~L~~lL~~ 769 (1028)
.++.+.++ .+++...+.+.|+|...+..+..
T Consensus 469 ll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~ 501 (604)
T KOG4500|consen 469 LLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTK 501 (604)
T ss_pred HHHHHHHhhHhhhhHhhccccccHHHHHHHHHH
Confidence 77777665 44556778899999999999985
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.35 E-value=5.4e-10 Score=126.56 Aligned_cols=486 Identities=14% Similarity=0.106 Sum_probs=298.5
Q ss_pred HHhhcCChhhHHHHHHHHhccccC-chhHHHHHHcCCchhHHHhh--cCCCHHHHHHHHHHHHHhh-cCcchHHHHhhCC
Q 001690 459 SLLHNNNPNLSQKAHDVLQNLSHN-THFAVKMAEAGYFQPFVACF--NRGSQETRALMASALRNMR-LDESSIKTLKDRQ 534 (1028)
Q Consensus 459 ~lL~~~~~~~~~~a~~~L~nL~~~-~~n~~~i~~~G~v~~Lv~lL--~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g 534 (1028)
.-+.+.+|+....|..-..|+... ++++..+++.|+++.|..++ .++.++.+...+.++..+. ........+.+.+
T Consensus 16 ~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~ 95 (678)
T KOG1293|consen 16 YRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRII 95 (678)
T ss_pred HhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHh
Confidence 334456777778888888888654 56777899999999999998 4566778877777777774 5667788899999
Q ss_pred cHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHh---HHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCC
Q 001690 535 FIHNVIQMLSSNS-PVCKSACLKCIKTLIAHSKM---VKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQ 610 (1028)
Q Consensus 535 ~i~~Lv~lL~s~~-~~~~~~A~~aL~nL~~~~~~---~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~ 610 (1028)
.++.|..+|.+.+ ..+++..++++.++-...+. ....... .+++.+..++.... ....+.-+...++++...
T Consensus 96 ~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~-sIi~~~s~l~s~~l--k~~~~l~~~~~a~~s~~~- 171 (678)
T KOG1293|consen 96 ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLK-SIIVKFSLLYSIEL--KYISRLDVSRAAHLSSTK- 171 (678)
T ss_pred hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHH-HHHHHHHHHHhhhh--hhhhhhhhhhhccccccc-
Confidence 9999999999888 88899999999999554322 2222222 35555555554122 112233333344444433
Q ss_pred CCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHH---HhhcCC----HHHHHHHHhhhchHH--HHHhhhcC
Q 001690 611 HPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLV---KLCYKS----EKVRNLIESNNDAIT--QLFSSLDS 681 (1028)
Q Consensus 611 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~---~L~~~~----~~~~~~i~~~~g~v~--~Lv~Ll~~ 681 (1028)
++ +..+...|+.+.+.-++...+...+..|+..+. ++..++ -........ .|..+ ..-+++++
T Consensus 172 ~h-------q~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d-~~v~~r~~v~rL~k~ 243 (678)
T KOG1293|consen 172 DH-------QLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKD-KGVNIRCVVTRLLKD 243 (678)
T ss_pred hh-------hheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhc-cccchhhhhhhhhhC
Confidence 22 346788888999888888888999999999998 776666 333344454 45444 45568888
Q ss_pred CChhHHHHHHHHHHHhcC-CCCCCCCCCCCCCCcccHHHH-----HHhccCCC--CHHHHHHHHHHHhcCCCCChHHHHH
Q 001690 682 DQPVVRRWAMRLIHCISE-GNPNGVPLPPSPGKETAINTV-----AAIFTCSP--DVEERSLAAGIISQLPKDDIYVDEV 753 (1028)
Q Consensus 682 ~~~~v~~~A~~~L~~Ls~-~~~~~~i~~~~~~~~~~i~~L-----v~lL~~~~--~~~~~~~a~~~L~nL~~~~~~~~~~ 753 (1028)
++...+..++..+-++-+ .++.....-.....+.+-..+ +.++..+. ..+.....-+.++.+.. .++..
T Consensus 244 ~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~s---klq~~ 320 (678)
T KOG1293|consen 244 PDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFAS---KLQLP 320 (678)
T ss_pred CCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHH---hhhhH
Confidence 887666666655554432 111111100000111111111 11222221 11222222223333322 33445
Q ss_pred HHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHH
Q 001690 754 LCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQR 833 (1028)
Q Consensus 754 l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~ 833 (1028)
-.+....+.+.+++....+ -.. .....--+.-+-.....++........++.+.+.-....+..+....+.+..++
T Consensus 321 ~~e~~~~~~~~ellf~~~s---l~a-~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aa 396 (678)
T KOG1293|consen 321 QHEEATLKTTTELLFICAS---LAA-SDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAA 396 (678)
T ss_pred HhhhhhhhhHHHHHHHHHH---Hhh-cchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHH
Confidence 5566677777777764210 000 000000011111111222222222334444544444445555555667777777
Q ss_pred HHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhH
Q 001690 834 AASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPL 913 (1028)
Q Consensus 834 Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~L 913 (1028)
|...+.+++++... |+ .+ +-...++.||
T Consensus 397 a~l~~~s~srsV~a------L~------------------tg----------------------------~~~~dv~~pl 424 (678)
T KOG1293|consen 397 ALLCLKSFSRSVSA------LR------------------TG----------------------------LKRNDVAQPL 424 (678)
T ss_pred HHHHHHHHHHHHHH------HH------------------cC----------------------------CccchhHHHH
Confidence 77777777766444 22 11 1235678999
Q ss_pred HhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhhhhhcc
Q 001690 914 VRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQR 993 (1028)
Q Consensus 914 v~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 993 (1028)
|++|..++..|...+++||+||..+-.+.+ .-+.+.|||+.+++.+...+.+.+.++.|+|.+..-..+...++...
T Consensus 425 vqll~dp~~~i~~~~lgai~NlVmefs~~k---skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~ 501 (678)
T KOG1293|consen 425 VQLLMDPEIMIMGITLGAICNLVMEFSNLK---SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL 501 (678)
T ss_pred HHHhhCcchhHHHHHHHHHHHHHhhcccHH---HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999998865544 45668899999999999999999999999999998766666544444
Q ss_pred c--ch-HHHhhccc--cchHHHHHHHHHHh
Q 001690 994 S--ER-ILIQLLDD--DALKKKVALVLMQM 1018 (1028)
Q Consensus 994 ~--~~-~Lv~~l~~--~~~~~~aa~~L~~l 1018 (1028)
+ .+ -|+++-.+ ..+...+-.+|++|
T Consensus 502 ~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 502 AKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4 23 55566666 77888888888876
No 28
>PRK09687 putative lyase; Provisional
Probab=99.32 E-value=2.3e-10 Score=124.35 Aligned_cols=255 Identities=14% Similarity=0.099 Sum_probs=197.9
Q ss_pred CchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHh
Q 001690 494 YFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLL 573 (1028)
Q Consensus 494 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~ 573 (1028)
-++.|+.+|.+.+..++..++.+|..+. ...+++.+..++.++++.+|..|+++|+.|...... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 5788999999999999999999998664 345678889999999999999999999998654322 1
Q ss_pred CCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001690 574 DPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVK 653 (1028)
Q Consensus 574 ~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~ 653 (1028)
. .+++.|..++.... +..++..|+.+|.+++..... ....++..+...+...++.++..++.+|..
T Consensus 89 ~-~a~~~L~~l~~~D~-d~~VR~~A~~aLG~~~~~~~~------------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 89 D-NVFNILNNLALEDK-SACVRASAINATGHRCKKNPL------------YSPKIVEQSQITAFDKSTNVRFAVAFALSV 154 (280)
T ss_pred H-HHHHHHHHHHhcCC-CHHHHHHHHHHHhcccccccc------------cchHHHHHHHHHhhCCCHHHHHHHHHHHhc
Confidence 1 36788887755433 368889999999998653321 122356777788888899999999999976
Q ss_pred hhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHH
Q 001690 654 LCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEER 733 (1028)
Q Consensus 654 L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~ 733 (1028)
+. . ..+++.|+.+++++++.+|..|+.+|..+. .. ++..++.|+..|.+.+. .++
T Consensus 155 ~~-----------~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~-----------~~~~~~~L~~~L~D~~~-~VR 209 (280)
T PRK09687 155 IN-----------D-EAAIPLLINLLKDPNGDVRNWAAFALNSNK-YD-----------NPDIREAFVAMLQDKNE-EIR 209 (280)
T ss_pred cC-----------C-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CC-----------CHHHHHHHHHHhcCCCh-HHH
Confidence 53 2 478999999999999999999999999884 21 23568899999987765 899
Q ss_pred HHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhc
Q 001690 734 SLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKL 813 (1028)
Q Consensus 734 ~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~ 813 (1028)
..|+..|+++.. ..++|.|+..|.+ + .+...++.+|..+-. .
T Consensus 210 ~~A~~aLg~~~~-----------~~av~~Li~~L~~------~---------~~~~~a~~ALg~ig~------------~ 251 (280)
T PRK09687 210 IEAIIGLALRKD-----------KRVLSVLIKELKK------G---------TVGDLIIEAAGELGD------------K 251 (280)
T ss_pred HHHHHHHHccCC-----------hhHHHHHHHHHcC------C---------chHHHHHHHHHhcCC------------H
Confidence 999999998643 2578999999984 1 133456666666642 2
Q ss_pred CCHHHHHHHhh-cCCHHHHHHHHHHHHh
Q 001690 814 EVYPSLIRVLS-TGSSLAKQRAASALAD 840 (1028)
Q Consensus 814 ~~i~~Lv~lL~-s~~~~vk~~Aa~aL~~ 840 (1028)
..+|.|.+++. +.++.++..|.++|..
T Consensus 252 ~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 45899999997 7899999999988854
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1e-08 Score=123.47 Aligned_cols=466 Identities=16% Similarity=0.176 Sum_probs=303.3
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc--CHHHHHHHHHHHHHHhcc-----cHH
Q 001690 332 FQNAIIKINSDDQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD--TRLSTEAILKCLYFLAKY-----SDI 403 (1028)
Q Consensus 332 i~~~~~~L~s~~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~-----~~~ 403 (1028)
+..++..+.+.+.+.+.+|.+.+..+. ..+ ..|.|..++.+ ++.+|.-|.-.++.+... +.+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 445677788888888888888888765 322 77888888887 999998888777777543 123
Q ss_pred HHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccc
Q 001690 404 HKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLS 480 (1028)
Q Consensus 404 ~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~ 480 (1028)
.|..|. ..+...+.+. .+|..-+.++.+++++.--. .-++.++.|++..+|+++..++-|..+|+.+.
T Consensus 76 ~~~sik-----s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 76 VQQSIK-----SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhh
Confidence 444432 2344444443 66777788888887743111 33788899999999999999999999999987
Q ss_pred cCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcC-cchHHHHhh-CCcHHHHHHHhc----CCCHHHHHHH
Q 001690 481 HNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLD-ESSIKTLKD-RQFIHNVIQMLS----SNSPVCKSAC 554 (1028)
Q Consensus 481 ~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~-~g~i~~Lv~lL~----s~~~~~~~~A 554 (1028)
..-.|...=.-....+.|.+.+.+++..++..|+.++...+.. +.++...-. ...+|.++..+. .++...-..+
T Consensus 147 ~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~ 226 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA 226 (1075)
T ss_pred hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH
Confidence 5543322100001233444555666666999999999998543 333443333 235676766654 5667777888
Q ss_pred HHHHHHHhcC-CHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHH
Q 001690 555 LKCIKTLIAH-SKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFL 633 (1028)
Q Consensus 555 ~~aL~nL~~~-~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv 633 (1028)
..+|-.|... +......+.. ++..-+.+..+..-+..++..|...|..++......-. .....-...++.++
T Consensus 227 l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k-----~~~~~~~~lv~~~l 299 (1075)
T KOG2171|consen 227 LEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK-----KLALLGHTLVPVLL 299 (1075)
T ss_pred HHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh-----hchhhhccHHHHHH
Confidence 8888888755 4555555553 77777888877766778889999999888875221000 01112233455566
Q ss_pred HHhcCC--C--------------HHHHHHHHHHHHHhhcCC--HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHH
Q 001690 634 QLIANT--E--------------RETKIQFLHLLVKLCYKS--EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIH 695 (1028)
Q Consensus 634 ~lL~~~--~--------------~~~~~~a~~aL~~L~~~~--~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~ 695 (1028)
.++... + ......|.++|-.++.+- ..+. .-..+.+-.++++.+..-|.+|..+|+
T Consensus 300 ~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~------p~~~~~l~~~l~S~~w~~R~AaL~Als 373 (1075)
T KOG2171|consen 300 AMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL------PPLFEALEAMLQSTEWKERHAALLALS 373 (1075)
T ss_pred HhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 655421 1 112345666776666543 2211 133455667889999999999999999
Q ss_pred HhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCC
Q 001690 696 CISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHN 775 (1028)
Q Consensus 696 ~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~ 775 (1028)
.+++ +..+.+...+ ...++..+..|.+++. .+|.+|+-+|+.++.+-..-.+.-...-.++.|+..+.+.+
T Consensus 374 ~i~E-Gc~~~m~~~l---~~Il~~Vl~~l~Dphp-rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~---- 444 (1075)
T KOG2171|consen 374 VIAE-GCSDVMIGNL---PKILPIVLNGLNDPHP-RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ---- 444 (1075)
T ss_pred HHHc-ccHHHHHHHH---HHHHHHHHhhcCCCCH-HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC----
Confidence 9994 4433333321 2445556677777664 89999999999998854444455556667778888888631
Q ss_pred CCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHH-HHHHHhhcCCHHHHHHHHHHHHhhhhcccc
Q 001690 776 GIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYP-SLIRVLSTGSSLAKQRAASALADLSQSTSV 847 (1028)
Q Consensus 776 ~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~-~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~ 847 (1028)
...+...++.++.+|+.........-..+ +.+. .|..|+.++++.+|..++.+|+..+.....
T Consensus 445 --------~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 445 --------NVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred --------chHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 36778889999999986544443222221 2222 334455688999999999999998865444
No 30
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.25 E-value=4.1e-09 Score=119.61 Aligned_cols=485 Identities=12% Similarity=0.097 Sum_probs=305.6
Q ss_pred HhhhcCCChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc-CH--HHHHHHHHHHHHHhcccHHHHHHHHHh
Q 001690 336 IIKINSDDQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD-TR--LSTEAILKCLYFLAKYSDIHKEAIVEA 411 (1028)
Q Consensus 336 ~~~L~s~~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s-~~--~~~~~A~~~L~~Ls~~~~~~k~~i~~~ 411 (1028)
...+...+++...++....++.. .++.++..+.+.|++|.|..++.. +. ..+......+..+...+.+....+...
T Consensus 15 l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~ 94 (678)
T KOG1293|consen 15 LYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRI 94 (678)
T ss_pred HHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHH
Confidence 34455667888899999999999 889999999999999999999987 43 444445555555665555667778889
Q ss_pred chhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhc-ccchHHHHHHHhhc-CChhhHHHHHHHHhccccCchhH
Q 001690 412 GAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGN-TKDCITIMVSLLHN-NNPNLSQKAHDVLQNLSHNTHFA 486 (1028)
Q Consensus 412 g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~-~~g~I~~Lv~lL~~-~~~~~~~~a~~~L~nL~~~~~n~ 486 (1028)
+.++.+..+|.+. ...+..++.+..+-....+...... ....|-..+.++.+ +.......-+....++|....++
T Consensus 95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq 174 (678)
T KOG1293|consen 95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQ 174 (678)
T ss_pred hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhh
Confidence 9999999999887 5677788888887443322222211 12233333444444 55566666677778888888888
Q ss_pred HHHHHcCCchhHHHhhcCCCHHHHHHHHHHHH---Hh-hcCcchHHHH----hhCCcHH--HHHHHhcCCCHHHHHHHHH
Q 001690 487 VKMAEAGYFQPFVACFNRGSQETRALMASALR---NM-RLDESSIKTL----KDRQFIH--NVIQMLSSNSPVCKSACLK 556 (1028)
Q Consensus 487 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~---~L-a~~~~~~~~i----~~~g~i~--~Lv~lL~s~~~~~~~~A~~ 556 (1028)
..+.++|+.+.+.-++...+..++..|...+. ++ ..++.+.... .+.|+.+ .+.+++++++...+-.++.
T Consensus 175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 88899999988888777767778888888888 65 3455554443 3355555 4567788888888888888
Q ss_pred HHHHHhcCCHhHHHHHh-----CCCc-HHH---HHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccc
Q 001690 557 CIKTLIAHSKMVKHLLL-----DPAT-IPL---LLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEH 627 (1028)
Q Consensus 557 aL~nL~~~~~~~~~lv~-----~~g~-v~~---L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g 627 (1028)
+|.++.....+...... ..|- .-. .+.++..+. ...-..+..+.+-+++-.. ..+..-.+..
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~--~s~l~~~~~l~c~~a~~~s-------klq~~~~e~~ 325 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPG--LSTLDHTNVLFCILARFAS-------KLQLPQHEEA 325 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCc--eeehhhhhhhHHHHHHHHH-------hhhhHHhhhh
Confidence 88888655422222211 1010 001 111111111 1111122222222221000 0112223344
Q ss_pred cHHHHHHHhc------CCCHHHHHHHHH---HHHHhhcCC-HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHh
Q 001690 628 NVNVFLQLIA------NTERETKIQFLH---LLVKLCYKS-EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCI 697 (1028)
Q Consensus 628 ~v~~Lv~lL~------~~~~~~~~~a~~---aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~L 697 (1028)
.++...+++. ...+..+.-++. .+...+.+. -..++.+.+ -.....+..+.-..+...+.+|+-.+.++
T Consensus 326 ~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~-~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 326 TLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILE-TTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHH-HHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 4555555543 333433332222 222223222 233344444 33444455555566777777777777776
Q ss_pred cCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCC
Q 001690 698 SEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGI 777 (1028)
Q Consensus 698 s~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~ 777 (1028)
++.-. .....+ .+..+..+||++|..++. .++..+.|+|+|+...-...+..+.+.|+|..+.+++.+.
T Consensus 405 srsV~--aL~tg~-~~~dv~~plvqll~dp~~-~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~------- 473 (678)
T KOG1293|consen 405 SRSVS--ALRTGL-KRNDVAQPLVQLLMDPEI-MIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP------- 473 (678)
T ss_pred HHHHH--HHHcCC-ccchhHHHHHHHhhCcch-hHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-------
Confidence 63110 000001 234679999999976654 7889999999999998888899999999999999999863
Q ss_pred CCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccc
Q 001690 778 RTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSV 847 (1028)
Q Consensus 778 ~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~ 847 (1028)
+.....+..|+|.++.-..+...+.+...-=....++.+.++.++.||+.+-..|.||..+...
T Consensus 474 ------~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 474 ------DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred ------CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 3667788999999987555555544433333344566667788999999999999999877555
No 31
>PRK09687 putative lyase; Provisional
Probab=99.24 E-value=5.9e-10 Score=121.13 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=189.2
Q ss_pred chhHHHHHhhccC--CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHH
Q 001690 412 GAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKM 489 (1028)
Q Consensus 412 g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i 489 (1028)
-.++.++..|.+. .++..|+..|..+.. ..+++.+..+++++++..+..|+.+|..|-..+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 3467788888776 778888888887753 57888899999999999999999999998543321
Q ss_pred HHcCCchhHHHh-hcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhH
Q 001690 490 AEAGYFQPFVAC-FNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMV 568 (1028)
Q Consensus 490 ~~~G~v~~Lv~l-L~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~ 568 (1028)
..-+++.|..+ +.+.++.++..++.+|+++....... ...++..+...+.++++.+|..|+++|..+...
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~---- 158 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE---- 158 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH----
Confidence 12356777777 57888899999999999884322100 122456677778888999999999999765322
Q ss_pred HHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHH
Q 001690 569 KHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFL 648 (1028)
Q Consensus 569 ~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~ 648 (1028)
.+++.|+.++.+.+ ..++..|+.+|..+.... ..+++.|+.++...++.++..|+
T Consensus 159 -------~ai~~L~~~L~d~~--~~VR~~A~~aLg~~~~~~----------------~~~~~~L~~~L~D~~~~VR~~A~ 213 (280)
T PRK09687 159 -------AAIPLLINLLKDPN--GDVRNWAAFALNSNKYDN----------------PDIREAFVAMLQDKNEEIRIEAI 213 (280)
T ss_pred -------HHHHHHHHHhcCCC--HHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHhcCCChHHHHHHH
Confidence 57899999998554 478888888888873211 23788899999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 649 HLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 649 ~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
.+|..+- . ..++++|+..+++++ ++..|+.+|..+.. ..+++.|.+++....
T Consensus 214 ~aLg~~~-----------~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--------------~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 214 IGLALRK-----------D-KRVLSVLIKELKKGT--VGDLIIEAAGELGD--------------KTLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHccC-----------C-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--------------HhHHHHHHHHHhhCC
Confidence 9997752 2 478999999998866 67778888888772 246899999998555
Q ss_pred CHHHHHHHHHHHh
Q 001690 729 DVEERSLAAGIIS 741 (1028)
Q Consensus 729 ~~~~~~~a~~~L~ 741 (1028)
+..++..|..+|.
T Consensus 266 d~~v~~~a~~a~~ 278 (280)
T PRK09687 266 DNEIITKAIDKLK 278 (280)
T ss_pred ChhHHHHHHHHHh
Confidence 6577777766664
No 32
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.23 E-value=4.6e-12 Score=93.96 Aligned_cols=39 Identities=41% Similarity=1.099 Sum_probs=31.5
Q ss_pred CcCccccccCceEccCcccchHHHHHHHHhcCC---CCCCCc
Q 001690 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGG---KNCPTC 301 (1028)
Q Consensus 263 Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~---~~CP~~ 301 (1028)
||||+++|+|||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998543 469987
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.23 E-value=1.7e-09 Score=137.05 Aligned_cols=273 Identities=19% Similarity=0.151 Sum_probs=215.2
Q ss_pred hccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhchhhhhh
Q 001690 370 AGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEK 446 (1028)
Q Consensus 370 ~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~ 446 (1028)
...++.|+..|.+ ++.+|..|+..|..+.. .+.++.|+..|.+. .++..|+..|..+...
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 4577899999999 99999999999987642 34678889999877 8888899998877431
Q ss_pred hhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcch
Q 001690 447 IGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESS 526 (1028)
Q Consensus 447 i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 526 (1028)
....+.|...|+++++.++..|+.+|..+.. +-...|+..|.+.++.++..|+.+|..+.
T Consensus 683 ----~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~----- 742 (897)
T PRK13800 683 ----LPPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD----- 742 (897)
T ss_pred ----cCchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc-----
Confidence 1234678889999999999999999988642 22456788899999999999999988752
Q ss_pred HHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001690 527 IKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMV 606 (1028)
Q Consensus 527 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~ 606 (1028)
..+.|..++.++++.+|..++.+|..+..... +.++.|..++.+.+ +.++..|+.+|.++.
T Consensus 743 --------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d--~~VR~aA~~aLg~~g 803 (897)
T PRK13800 743 --------DVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPD--PLVRAAALAALAELG 803 (897)
T ss_pred --------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCC--HHHHHHHHHHHHhcC
Confidence 23567788999999999999999999865421 35788888887553 678888888887774
Q ss_pred cCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhH
Q 001690 607 GGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVV 686 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v 686 (1028)
... ..+..++..|.++++.++..|+.+|..+.. ..+++.|+.+|++++..|
T Consensus 804 ~~~-----------------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~V 854 (897)
T PRK13800 804 CPP-----------------DDVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDV 854 (897)
T ss_pred Ccc-----------------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHH
Confidence 311 134678889999999999999999987642 467899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHh
Q 001690 687 RRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIIS 741 (1028)
Q Consensus 687 ~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~ 741 (1028)
|..|+++|..+. .+....+.|...+.+++ ..++..|..+|.
T Consensus 855 R~~A~~aL~~~~-------------~~~~a~~~L~~al~D~d-~~Vr~~A~~aL~ 895 (897)
T PRK13800 855 RKAAVLALTRWP-------------GDPAARDALTTALTDSD-ADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHhccC-------------CCHHHHHHHHHHHhCCC-HHHHHHHHHHHh
Confidence 999999999873 12346788888888765 488888888775
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.21 E-value=4.2e-09 Score=133.59 Aligned_cols=277 Identities=20% Similarity=0.228 Sum_probs=215.9
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTL 530 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i 530 (1028)
...++.|+..|.++++.++..|+.+|..+. ..++++.|+..|.++++.++..|+.+|..+....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 578899999999999999999999999774 2457899999999999999999999998774211
Q ss_pred hhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCC
Q 001690 531 KDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQ 610 (1028)
Q Consensus 531 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~ 610 (1028)
...+.|...|.++++.+|..|+.+|..+.. +....|+..|.+. +..++..|+.+|..+-
T Consensus 684 ---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~--d~~VR~~Av~aL~~~~---- 742 (897)
T PRK13800 684 ---PPAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDP--DHRVRIEAVRALVSVD---- 742 (897)
T ss_pred ---CchHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCC--CHHHHHHHHHHHhccc----
Confidence 123678888999999999999999988642 3345667777644 3677788887776541
Q ss_pred CCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHH
Q 001690 611 HPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWA 690 (1028)
Q Consensus 611 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A 690 (1028)
..+.|..++..+++.++..++.+|..+.... ..+++.|..+++++++.+|..|
T Consensus 743 -----------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~----------~~~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 743 -----------------DVESVAGAATDENREVRIAVAKGLATLGAGG----------APAGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred -----------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc----------chhHHHHHHHhcCCCHHHHHHH
Confidence 1245778899999999999999999885432 3457889999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhh
Q 001690 691 MRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSM 770 (1028)
Q Consensus 691 ~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~ 770 (1028)
+.+|..+... ...+..++..|.+++ ..++..|+.+|+.+.. ...++.|+.+|.+.
T Consensus 796 ~~aLg~~g~~-------------~~~~~~l~~aL~d~d-~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~ 850 (897)
T PRK13800 796 LAALAELGCP-------------PDDVAAATAALRASA-WQVRQGAARALAGAAA-----------DVAVPALVEALTDP 850 (897)
T ss_pred HHHHHhcCCc-------------chhHHHHHHHhcCCC-hHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC
Confidence 9999988621 123466888887765 5899999999998754 23468899999852
Q ss_pred cCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHh
Q 001690 771 DGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALAD 840 (1028)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ 840 (1028)
+..+...++.+|.++. .++.. .+.|...|++.++.|++.|+.+|..
T Consensus 851 -------------~~~VR~~A~~aL~~~~--~~~~a---------~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 851 -------------HLDVRKAAVLALTRWP--GDPAA---------RDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred -------------CHHHHHHHHHHHhccC--CCHHH---------HHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 3678888999998763 23333 5678899999999999999999864
No 35
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.7e-10 Score=115.28 Aligned_cols=219 Identities=20% Similarity=0.226 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchh--------hhHHHHhhhhHHHHHHHHHHHHHHHHhhcccccchhhcHHHHHHHH
Q 001690 73 FTKAALETLGAQLREAHNIIDDYKSR--------SRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTD 144 (1028)
Q Consensus 73 ~~~~~l~~L~~~l~~ak~Ll~~c~~~--------Sklyll~~~~~~~~~~~~~~~~l~~~L~~~p~~~l~~~~~~~~~~~ 144 (1028)
-...+++-|. ++.-....++|... =+-|++.++......|.+.+..|.++++....+.+...+++-.++.
T Consensus 47 ~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 47 YTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALR 124 (284)
T ss_pred hhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 4577777776 66666666666531 3569999999999999999999999999987777877877777666
Q ss_pred HHHHHHhhcccccchHHHH------HHHHHHHHHhhhcCCchhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Q 001690 145 QIVDSLRSMEFQSVAAAEA------IASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQEKEELEA 218 (1028)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~------~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~e~~~l~~~~~~~~~ 218 (1028)
.++.+-+ .. .+++. +.+-+..++...+. .+ +-..+ .-| -+ .+.+ ......++
T Consensus 125 ~ak~~~w----~v-~e~~Ri~Q~~El~~yl~slie~~~~-~~----~s~~~--~N~-~s-de~~----k~~q~~~~---- 182 (284)
T KOG4642|consen 125 DAKKKRW----EV-SEEKRIRQELELHSYLESLIEGDRE-RE----LSEWQ--ENG-ES-DEHL----KTMQVPIE---- 182 (284)
T ss_pred HHHhCcc----ch-hHHHHHHHHhhHHHHHHHHhccchh-hH----HHHHH--HcC-CC-hHHH----hhhcchhH----
Confidence 5554422 11 12222 22222222221110 00 00000 001 01 1111 11111111
Q ss_pred HHhHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCC
Q 001690 219 EKKQAEALQLTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNC 298 (1028)
Q Consensus 219 ~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~C 298 (1028)
..-...+..+.+++++++....+. ++|+.++|.|++++|++||++|+|-||.|.-|.++++.-++..
T Consensus 183 ---~~~d~~~kel~elf~~v~e~rk~r----------Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfd 249 (284)
T KOG4642|consen 183 ---QDHDHTTKELSELFSKVDEKRKKR----------EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFD 249 (284)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhccc----------cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCC
Confidence 111235677778888777655543 5679999999999999999999999999999999999888999
Q ss_pred CCccccccccCCcCccchhhhHHHHHHhhh
Q 001690 299 PTCRQELLSLDLMPNLSLRSSIEEWKQREI 328 (1028)
Q Consensus 299 P~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 328 (1028)
|+||.++...+++||+.|+..|+.|...|.
T Consensus 250 pvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 250 PVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred chhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 999999999999999999999999998875
No 36
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.18 E-value=1.7e-11 Score=120.49 Aligned_cols=60 Identities=25% Similarity=0.572 Sum_probs=52.0
Q ss_pred CCCCcccCcCccccccCceEccCcccchHHHHHHHHhc---------------CCCCCCCccccccccCCcCccc
Q 001690 256 YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQR---------------GGKNCPTCRQELLSLDLMPNLS 315 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~---------------~~~~CP~~~~~l~~~~l~~n~~ 315 (1028)
...+++.||||++.++|||+++|||.||+.||.+|+.. +...||.|+..+...+++|.+.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 34478999999999999999999999999999999852 2358999999999888888754
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.15 E-value=5.4e-09 Score=126.42 Aligned_cols=433 Identities=16% Similarity=0.217 Sum_probs=294.0
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhcCChhhhHHHHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHh
Q 001690 333 QNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEA 411 (1028)
Q Consensus 333 ~~~~~~L~s~~~~~~~~al~~L~~l~~~~~~r~~i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~ 411 (1028)
..+...+.++++..+.-|++.+..++. ++-. .-.+|.+.+++.+ ++.+|..|+.++..+....++ .+...
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~-~~~~-----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~ 152 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRT-PEMA-----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE 152 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-S-HHHH-----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhcc-cchh-----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH
Confidence 445567788888888889999988762 2211 2257788899999 999999999999999876522 22122
Q ss_pred chhHHHHHhhccC--CchhHHHHHHHHh-hhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHH
Q 001690 412 GAVRRIVKQICKG--ETMPEAIEVLSEL-TKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVK 488 (1028)
Q Consensus 412 g~i~~lv~~L~~~--e~~~~A~~~L~~L-s~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~ 488 (1028)
.++.+..+|.+. .+...|+.++..+ ...+.+. .+. +..+..|.+++...+|..+..++..|..++........
T Consensus 153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~--~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~ 228 (526)
T PF01602_consen 153 -LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLI--PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD 228 (526)
T ss_dssp -HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THH--HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH
T ss_pred -HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-hhH--HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh
Confidence 578888888776 7888888889888 2222222 222 35667777777889999999999999999876543331
Q ss_pred HHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhH
Q 001690 489 MAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMV 568 (1028)
Q Consensus 489 i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~ 568 (1028)
- ...++.+..+|.+.++.+..+++.++..+...+. .-..++++|+.+|.++++.++..++..|..++...
T Consensus 229 ~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--- 298 (526)
T PF01602_consen 229 K--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--- 298 (526)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---
T ss_pred H--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---
Confidence 1 4567888999988889999999999998876655 22346899999999999999999999999998776
Q ss_pred HHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHh-cCCCHHHHHHH
Q 001690 569 KHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLI-ANTERETKIQF 647 (1028)
Q Consensus 569 ~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~~~~~a 647 (1028)
...+.. ....+..+.. +++..++..+..+|.+++.... . ..+++.|...+ ..++++.+..+
T Consensus 299 ~~~v~~---~~~~~~~l~~-~~d~~Ir~~~l~lL~~l~~~~n---------~-----~~Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 299 PPAVFN---QSLILFFLLY-DDDPSIRKKALDLLYKLANESN---------V-----KEILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp HHHHGT---HHHHHHHHHC-SSSHHHHHHHHHHHHHH--HHH---------H-----HHHHHHHHHHHHHC--HHHHHHH
T ss_pred chhhhh---hhhhhheecC-CCChhHHHHHHHHHhhcccccc---------h-----hhHHHHHHHHHHhccchhhhhhH
Confidence 222222 2222334442 2347889999999999997321 1 12688888899 46688999999
Q ss_pred HHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCC
Q 001690 648 LHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCS 727 (1028)
Q Consensus 648 ~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~ 727 (1028)
+..+..++...+... ...++.++.++....+.+...+...+..+....++ .....+..|+..+.+-
T Consensus 361 i~~I~~la~~~~~~~------~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--------~~~~~l~~L~~~l~~~ 426 (526)
T PF01602_consen 361 IKAIGDLAEKFPPDA------EWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--------LREKILKKLIELLEDI 426 (526)
T ss_dssp HHHHHHHHHHHGSSH------HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--------THHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhccCchH------HHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--------hhHHHHHHHHHHHHHh
Confidence 999999875432111 35677899999988787788788778777632221 1235688999999987
Q ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCC-hHH
Q 001690 728 PDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTK-PEL 806 (1028)
Q Consensus 728 ~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~-~~~ 806 (1028)
.....+..++++++......++ .+..+.++..+... .......++..+..++..+..... .+.
T Consensus 427 ~~~~~~~~~~wilGEy~~~~~~-------~~~~~~~~~~l~~~---------~~~~~~~vk~~ilt~~~Kl~~~~~~~~~ 490 (526)
T PF01602_consen 427 SSPEALAAAIWILGEYGELIEN-------TESAPDILRSLIEN---------FIEESPEVKLQILTALAKLFKRNPENEV 490 (526)
T ss_dssp SSHHHHHHHHHHHHHHCHHHTT-------TTHHHHHHHHHHHH---------HTTSHHHHHHHHHHHHHHHHHHSCSTTH
T ss_pred hHHHHHHHHHhhhcccCCcccc-------cccHHHHHHHHHHh---------hccccHHHHHHHHHHHHHHHhhCCchhh
Confidence 7778889999999986542111 12344444444421 001135566667777776653211 122
Q ss_pred HHHHhhcCCHHHHHHHhh--cCCHHHHHHHHHHHHhh
Q 001690 807 QRQVGKLEVYPSLIRVLS--TGSSLAKQRAASALADL 841 (1028)
Q Consensus 807 ~~~i~~~~~i~~Lv~lL~--s~~~~vk~~Aa~aL~~l 841 (1028)
++ .++..+.++.+ +.+++||..|..-+.-+
T Consensus 491 ~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 491 QN-----EILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 22 22455666666 67999999998766544
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.14 E-value=2.1e-08 Score=121.35 Aligned_cols=471 Identities=18% Similarity=0.204 Sum_probs=310.4
Q ss_pred chhHHHHHhhccC--CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHH
Q 001690 412 GAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKM 489 (1028)
Q Consensus 412 g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i 489 (1028)
.+...+++.+.+. +.++-+--.+..+...+.- .+ .=++..+.+=|.++++..+..|+.+|.+++ .++ +
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~---~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~----~ 111 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LL---ILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPE----M 111 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HH---HHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHH----H
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HH---HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccc----h
Confidence 4566677777755 5555555555555443221 11 125667777788899999999999999987 222 2
Q ss_pred HHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhH
Q 001690 490 AEAGYFQPFVACFNRGSQETRALMASALRNMR-LDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMV 568 (1028)
Q Consensus 490 ~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~ 568 (1028)
++. .++.+.+++.++++.+|..|+.++.++. .+++ .+... .++.+..+|.+.++.++.+|+.++..+ ..++..
T Consensus 112 ~~~-l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~ 185 (526)
T PF01602_consen 112 AEP-LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS 185 (526)
T ss_dssp HHH-HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH
T ss_pred hhH-HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch
Confidence 222 5778899999999999999999999985 3444 22223 689999999999999999999999999 222211
Q ss_pred -HHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHH
Q 001690 569 -KHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQF 647 (1028)
Q Consensus 569 -~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a 647 (1028)
..++. ..+..|..++.. .++-++..+..+|..++....... .....++.+..++.+.++.+...+
T Consensus 186 ~~~~~~--~~~~~L~~~l~~--~~~~~q~~il~~l~~~~~~~~~~~----------~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 186 YKSLIP--KLIRILCQLLSD--PDPWLQIKILRLLRRYAPMEPEDA----------DKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp HTTHHH--HHHHHHHHHHTC--CSHHHHHHHHHHHTTSTSSSHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHH--HHHHHhhhcccc--cchHHHHHHHHHHHhcccCChhhh----------hHHHHHHHHHHHhhccccHHHHHH
Confidence 12222 244455555433 335556666666666554321100 004688999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCC
Q 001690 648 LHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCS 727 (1028)
Q Consensus 648 ~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~ 727 (1028)
++++..+..... +. ..++++|+.++.++++.++..+...|..++... ...+ . .....+..+..+
T Consensus 252 ~~~i~~l~~~~~-----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v------~--~~~~~~~~l~~~ 315 (526)
T PF01602_consen 252 IRLIIKLSPSPE-----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV------F--NQSLILFFLLYD 315 (526)
T ss_dssp HHHHHHHSSSHH-----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH------G--THHHHHHHHHCS
T ss_pred HHHHHHhhcchH-----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh------h--hhhhhhheecCC
Confidence 999999877654 22 368899999999999999999999999999422 1111 1 233344556655
Q ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCC--CChH
Q 001690 728 PDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDP--TKPE 805 (1028)
Q Consensus 728 ~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~--~~~~ 805 (1028)
++..++..++.+|.+++. ..+. .. +++.|...+.+. + +..+.+.++..+..++.. .+.+
T Consensus 316 ~d~~Ir~~~l~lL~~l~~-~~n~-~~-----Il~eL~~~l~~~-----~-------d~~~~~~~i~~I~~la~~~~~~~~ 376 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKLAN-ESNV-KE-----ILDELLKYLSEL-----S-------DPDFRRELIKAIGDLAEKFPPDAE 376 (526)
T ss_dssp SSHHHHHHHHHHHHHH---HHHH-HH-----HHHHHHHHHHHC--------------HHHHHHHHHHHHHHHHHHGSSHH
T ss_pred CChhHHHHHHHHHhhccc-ccch-hh-----HHHHHHHHHHhc-----c-------chhhhhhHHHHHHHHHhccCchHH
Confidence 566899999999999875 2332 22 466777777431 1 255777777777776631 2222
Q ss_pred HHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCC
Q 001690 806 LQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDH 885 (1028)
Q Consensus 806 ~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 885 (1028)
+ .+..+++++..+++.+...+...+.++....+. .
T Consensus 377 ~--------~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~------~------------------------------- 411 (526)
T PF01602_consen 377 W--------YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE------L------------------------------- 411 (526)
T ss_dssp H--------HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT------T-------------------------------
T ss_pred H--------HHHHHHHhhhhccccccchHHHHHHHHhhcChh------h-------------------------------
Confidence 2 367899999988788888888888888754333 1
Q ss_pred CCCCccccccCCcccchhhhhcCcchhHHhhhcC-CCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhc
Q 001690 886 QSSCSVHGAACSPRETFCLVKADAVKPLVRNLND-MESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEK 964 (1028)
Q Consensus 886 ~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~-~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~ 964 (1028)
...++..|++.+.+ .+++++.+++|.++......++.. ... .-+..+...+..
T Consensus 412 --------------------~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~-----~~~~~l~~~~~~ 465 (526)
T PF01602_consen 412 --------------------REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAP-----DILRSLIENFIE 465 (526)
T ss_dssp --------------------HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHH-----HHHHHHHHHHTT
T ss_pred --------------------hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHH-----HHHHHHHHhhcc
Confidence 12247788888885 677889999999998874332200 011 123344555556
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhhhhhcccchHHHhhcc--c--cchHHHHHHHHHHhc
Q 001690 965 GSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLD--D--DALKKKVALVLMQMN 1019 (1028)
Q Consensus 965 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~Lv~~l~--~--~~~~~~aa~~L~~l~ 1019 (1028)
.++.+|...+.++.+++...+...... .....+..+.. | +.+|++|-..++-|+
T Consensus 466 ~~~~vk~~ilt~~~Kl~~~~~~~~~~~-~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 466 ESPEVKLQILTALAKLFKRNPENEVQN-EILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCSTTHHH-HHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCchhhHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 778899999999999996544322211 11234555555 4 889999998887664
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.10 E-value=1.1e-09 Score=103.61 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=104.6
Q ss_pred HHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcC-cchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH
Q 001690 488 KMAEAGYFQPFVACFNRGSQETRALMASALRNMRLD-ESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSK 566 (1028)
Q Consensus 488 ~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~ 566 (1028)
.+++.|+++.|+.+|.++++.++..++.+|++++.. ++....+.+.|+++.++++|.++++.++..|+++|+||+.+++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467889999999999999999999999999999776 8888899999999999999999999999999999999998874
Q ss_pred -hHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHc
Q 001690 567 -MVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVG 607 (1028)
Q Consensus 567 -~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~ 607 (1028)
....++.. |+++.|++++...+ ..+++.+.++|.||+.
T Consensus 82 ~~~~~~~~~-g~l~~l~~~l~~~~--~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEA-GGVPKLVNLLDSSN--EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHC-CChHHHHHHHhcCC--HHHHHHHHHHHHHhhC
Confidence 45556666 99999999998653 6888999999999873
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.10 E-value=9.1e-10 Score=104.27 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=104.6
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccC-chhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCc-chHH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHN-THFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDE-SSIK 528 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~ 528 (1028)
.|.++.|+.+++++++..+..++.+|.+++.+ ++.+..+++.|++|.|+.+|.++++.++..++++|++|+.++ ....
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 69999999999999999999999999999988 678888889999999999999999999999999999997665 5667
Q ss_pred HHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 001690 529 TLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIA 563 (1028)
Q Consensus 529 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~ 563 (1028)
.+.+.|+++.|+++|.+++..+++.|+++|.||+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 77889999999999999999999999999999873
No 41
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=1e-10 Score=129.52 Aligned_cols=71 Identities=27% Similarity=0.514 Sum_probs=64.1
Q ss_pred CCCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHHHHhh
Q 001690 256 YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQRE 327 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 327 (1028)
.+...+.||||+++|.+||+++|||+||..||.+|+.. ...||.|+..+....+.+|..|.++|+.|....
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 34578999999999999999999999999999999974 458999999998888999999999999998654
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=99.00 E-value=1e-05 Score=98.60 Aligned_cols=504 Identities=11% Similarity=0.063 Sum_probs=300.8
Q ss_pred hccHHHHHHHHhc-CHHHHHHHHH-HHHHHhcccHHHHHHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhh-chhhh
Q 001690 370 AGLIPKLVEFLKD-TRLSTEAILK-CLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTK-RETLG 444 (1028)
Q Consensus 370 ~g~ip~Lv~lL~s-~~~~~~~A~~-~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~-~~~~~ 444 (1028)
.|-+..|.+.|.+ +...+..++. .+.+++.+. +. ....+.+++.+.+. +.++-.--.|.+.+. .++..
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH
Confidence 3455667777777 6655555554 555555554 22 12344556666655 666666666666655 22221
Q ss_pred hhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc-C
Q 001690 445 EKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRL-D 523 (1028)
Q Consensus 445 ~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~ 523 (1028)
--++..|.+=+++.++.++-.|+++|.++-.. .+++. .++++.+.|.+.++-++..|+-++.++.. +
T Consensus 104 ------lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 104 ------LLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred ------HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 13566778888889999999999999987432 22222 45677888899999999999999999854 3
Q ss_pred cchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHH
Q 001690 524 ESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILA 603 (1028)
Q Consensus 524 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~ 603 (1028)
++ .+.+.|.++.|.++|.+.++.+..+|+.+|..++......-.+.. +.+..|+..+..-+ .-.+-....+|
T Consensus 172 pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~--~~~~~Ll~~L~e~~--EW~Qi~IL~lL- 243 (746)
T PTZ00429 172 MQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSN--EWVNRLVYHLPECN--EWGQLYILELL- 243 (746)
T ss_pred cc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHH--HHHHHHHHHhhcCC--hHHHHHHHHHH-
Confidence 32 445678899999999999999999999999999765433322222 45666666665432 22223333333
Q ss_pred HHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHHHHHhhhcCC
Q 001690 604 LMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS-EKVRNLIESNNDAITQLFSSLDSD 682 (1028)
Q Consensus 604 nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~Ll~~~ 682 (1028)
+...+..+. .....+..+...|.+.++.+...+++++.++.... +.....+.. ....+|+.|+ ++
T Consensus 244 --~~y~P~~~~---------e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~--rl~~pLv~L~-ss 309 (746)
T PTZ00429 244 --AAQRPSDKE---------SAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV--RVNTALLTLS-RR 309 (746)
T ss_pred --HhcCCCCcH---------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH--HHHHHHHHhh-CC
Confidence 332211111 11357788888899999999999999999998653 333222221 3446778774 56
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHH
Q 001690 683 QPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKA 762 (1028)
Q Consensus 683 ~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~ 762 (1028)
+++++-.+...+..+...++ .+. ...+..+.-... +...++...+.+|..++. ..+.... +.-
T Consensus 310 ~~eiqyvaLr~I~~i~~~~P--~lf------~~~~~~Ff~~~~--Dp~yIK~~KLeIL~~Lan-e~Nv~~I------L~E 372 (746)
T PTZ00429 310 DAETQYIVCKNIHALLVIFP--NLL------RTNLDSFYVRYS--DPPFVKLEKLRLLLKLVT-PSVAPEI------LKE 372 (746)
T ss_pred CccHHHHHHHHHHHHHHHCH--HHH------HHHHHhhhcccC--CcHHHHHHHHHHHHHHcC-cccHHHH------HHH
Confidence 67899999888887773222 110 111222222222 334678899999998875 3333222 234
Q ss_pred HHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhh
Q 001690 763 IHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLS 842 (1028)
Q Consensus 763 L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls 842 (1028)
|.....+ .+..+...++.++.+++... +.. ....+..|+++++.+.. +...+..++.++.
T Consensus 373 L~eYa~d-------------~D~ef~r~aIrAIg~lA~k~-~~~-----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Il 432 (746)
T PTZ00429 373 LAEYASG-------------VDMVFVVEVVRAIASLAIKV-DSV-----APDCANLLLQIVDRRPE-LLPQVVTAAKDIV 432 (746)
T ss_pred HHHHhhc-------------CCHHHHHHHHHHHHHHHHhC-hHH-----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHH
Confidence 4444442 14678888888888887421 221 22457788899876544 4456778888875
Q ss_pred hcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhh---cC
Q 001690 843 QSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNL---ND 919 (1028)
Q Consensus 843 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL---~~ 919 (1028)
+..++ . -.+..|+..+ .-
T Consensus 433 rkyP~------~-----------------------------------------------------~il~~L~~~~~~~~i 453 (746)
T PTZ00429 433 RKYPE------L-----------------------------------------------------LMLDTLVTDYGADEV 453 (746)
T ss_pred HHCcc------H-----------------------------------------------------HHHHHHHHhhccccc
Confidence 43222 0 0133344322 23
Q ss_pred CCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhhhhhcccchHHH
Q 001690 920 MESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILI 999 (1028)
Q Consensus 920 ~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~Lv 999 (1028)
.+++.+.+..|.|+.+... ++++- ..+..++.-+...++.+|-..+.+.-++|....... ...-+..|-
T Consensus 454 ~e~~AKaaiiWILGEy~~~---I~~a~------~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~--~~~l~~vL~ 522 (746)
T PTZ00429 454 VEEEAKVSLLWMLGEYCDF---IENGK------DIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM--EPQLNRVLE 522 (746)
T ss_pred ccHHHHHHHHHHHHhhHhh---HhhHH------HHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHH
Confidence 5667777778888877521 11111 122222233335667788888888888876543211 000011221
Q ss_pred hhcc-c--cchHHHHHHHHHHhccC
Q 001690 1000 QLLD-D--DALKKKVALVLMQMNII 1021 (1028)
Q Consensus 1000 ~~l~-~--~~~~~~aa~~L~~l~~~ 1021 (1028)
.++. + +++|.+|-...+-|+..
T Consensus 523 ~~t~~~~d~DVRDRA~~Y~rLLs~~ 547 (746)
T PTZ00429 523 TVTTHSDDPDVRDRAFAYWRLLSKG 547 (746)
T ss_pred HHHhcCCChhHHHHHHHHHHHHcCC
Confidence 2222 2 67888887777666543
No 43
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=6e-07 Score=108.70 Aligned_cols=459 Identities=12% Similarity=0.092 Sum_probs=271.0
Q ss_pred CCChHHHHHHHHHHHHhc-CChhhhHHHHh---hccHHHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHHHHHHhchh
Q 001690 341 SDDQSRRKSALEEMKNIM-ELPQYAEKAAK---AGLIPKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAV 414 (1028)
Q Consensus 341 s~~~~~~~~al~~L~~l~-~~~~~r~~i~~---~g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i 414 (1028)
+.+++.+.-|+-.+|.++ . ++..+.. ......|+...-+ .+.+|..-..+...++.+.-+. ...+.+
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~---~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell 120 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTK---HWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELL 120 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHH
Confidence 445666666777788877 4 2222221 1222333433333 6777877777777777654111 124556
Q ss_pred HHHHHhhccC--CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhh----cCChhhHHHHHHHHhccccCch-hHH
Q 001690 415 RRIVKQICKG--ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLH----NNNPNLSQKAHDVLQNLSHNTH-FAV 487 (1028)
Q Consensus 415 ~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~----~~~~~~~~~a~~~L~nL~~~~~-n~~ 487 (1028)
+.+++..++. ..|+.|...|+.+...-.+. ..+.++.+..++. +++..++..|++++...+...+ |+.
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 6666666666 88999999999986522111 1234555555554 4555588899999888765543 333
Q ss_pred HHHHc-CCchhHHHhh----cCCCHHHHHHHHHHHHHhhcC-cch-HHHHhhCCcHHHHHHHhcC--CCHHHHHHHHHHH
Q 001690 488 KMAEA-GYFQPFVACF----NRGSQETRALMASALRNMRLD-ESS-IKTLKDRQFIHNVIQMLSS--NSPVCKSACLKCI 558 (1028)
Q Consensus 488 ~i~~~-G~v~~Lv~lL----~~~~~~~~~~a~~~L~~La~~-~~~-~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL 558 (1028)
..-.. ..+|.++..+ ..++.+....+..+|..+... +.. +..+. .+|..-.++.++ -+..+|..|+..|
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33222 3566666665 567777777778888877543 322 22221 133444445443 3578899999999
Q ss_pred HHHhcCCHhHHHHHhC--CCcHHHHHHHHhccCCC--------------hhHHHHHHHHHHHHHcCCCCCcccccccchh
Q 001690 559 KTLIAHSKMVKHLLLD--PATIPLLLGLIQFVRSD--------------PHLKHEAAEILALMVGGCQHPQFELHHGLQE 622 (1028)
Q Consensus 559 ~nL~~~~~~~~~lv~~--~g~v~~L~~lL~~~~~~--------------~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 622 (1028)
..++.......+.... .-.++.++..+.....+ ..-...|..+|-.++.+=.. +.
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g-~~-------- 344 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG-KQ-------- 344 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-hh--------
Confidence 9988763211111111 03566666666543222 11234555556566552111 11
Q ss_pred hcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCC
Q 001690 623 LQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNP 702 (1028)
Q Consensus 623 l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~ 702 (1028)
.---..+.+-.++.+++..-+..++.+|..++.+..+....... ..++..+..+++++++||-+|+.++..++. .-
T Consensus 345 -v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~--~Il~~Vl~~l~DphprVr~AA~naigQ~st-dl 420 (1075)
T KOG2171|consen 345 -VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP--KILPIVLNGLNDPHPRVRYAALNAIGQMST-DL 420 (1075)
T ss_pred -ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHhhcCCCCHHHHHHHHHHHHhhhh-hh
Confidence 01113344455567888888889999999999887554444333 677788889999999999999999999994 22
Q ss_pred CCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCc
Q 001690 703 NGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPAC 782 (1028)
Q Consensus 703 ~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~ 782 (1028)
..++... ..+..++.|+..+.+.....++..|+.++-|+......-.-.=+=.+.+.+.+..|... +
T Consensus 421 ~p~iqk~--~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~-----~------ 487 (1075)
T KOG2171|consen 421 QPEIQKK--HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS-----S------ 487 (1075)
T ss_pred cHHHHHH--HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC-----C------
Confidence 3333333 23455677899999988778888888888887654332111111123444333344321 2
Q ss_pred chhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCC-HHHHHHHHHHHHhhh
Q 001690 783 QDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGS-SLAKQRAASALADLS 842 (1028)
Q Consensus 783 ~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~-~~vk~~Aa~aL~~ls 842 (1028)
...++|.++.++...+........... ...+|.|...|.+.+ .+.+...+..+.+++
T Consensus 488 -~~~v~e~vvtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 488 -KPYVQEQAVTAIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred -chhHHHHHHHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 478899999999988853333333322 245888999998765 455554444444443
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.96 E-value=3.2e-07 Score=103.73 Aligned_cols=324 Identities=11% Similarity=0.117 Sum_probs=222.3
Q ss_pred ccHHHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHHHHHH-----hchhHHHHHhhccC--CchhHHHHHHHHhhhc-
Q 001690 371 GLIPKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKEAIVE-----AGAVRRIVKQICKG--ETMPEAIEVLSELTKR- 440 (1028)
Q Consensus 371 g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-----~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~- 440 (1028)
.++..++.+|+. ..++.+..+..+..+-..++.--..+.+ .....+++.+|... -....|...|..+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 467778888877 7778888888888887766322223333 24567888888766 5677777777777432
Q ss_pred hhhhhhhhcccchHHHHHHHhhcC-ChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCC--CHHHHHHHHHHH
Q 001690 441 ETLGEKIGNTKDCITIMVSLLHNN-NPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRG--SQETRALMASAL 517 (1028)
Q Consensus 441 ~~~~~~i~~~~g~I~~Lv~lL~~~-~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L 517 (1028)
....... ...-.+.-|...++++ +...+.-|+.+|..|...++.+..+.+.+++++|+.+|+.. +..++..++-++
T Consensus 133 ~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 1110000 0011233445555543 46788888999999999999999999999999999999653 457889999999
Q ss_pred HHhhcCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCC-------HhHHHHHhCCCcHHHHHHHHhccC
Q 001690 518 RNMRLDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHS-------KMVKHLLLDPATIPLLLGLIQFVR 589 (1028)
Q Consensus 518 ~~La~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~-------~~~~~lv~~~g~v~~L~~lL~~~~ 589 (1028)
+-|+.+++......+.+.|+.|+++++ +...++-+.++.+|.||...+ .....++.. |+ ++++..|....
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l-~~~l~~L~~rk 289 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KV-LKTLQSLEQRK 289 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-Ch-HHHHHHHhcCC
Confidence 999998887777778899999999998 456788999999999997743 234556665 54 55555555432
Q ss_pred -CChhHHHHHHHH-------HHHHHc--------------CCCCCcc--cccccchhhcccc--cHHHHHHHhc-CCCHH
Q 001690 590 -SDPHLKHEAAEI-------LALMVG--------------GCQHPQF--ELHHGLQELQSEH--NVNVFLQLIA-NTERE 642 (1028)
Q Consensus 590 -~~~~l~~~a~~~-------L~nL~~--------------~~~~~~~--~~~~~~~~l~~~g--~v~~Lv~lL~-~~~~~ 642 (1028)
.++++.+..... +..+++ .++.+.. .=.++...+.+.+ .+..|+++|. +.+|.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 334443332221 122221 0111110 0011222233222 5678999995 66788
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 643 TKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 643 ~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
+..-|+.=+..++.+.+.-+..+.. -|+=..+++|+.+++++|+..|..++..|.
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~-lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQ-LGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8777777788888888888888888 899899999999999999999999998775
No 45
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.94 E-value=4.7e-10 Score=82.46 Aligned_cols=38 Identities=39% Similarity=1.086 Sum_probs=33.3
Q ss_pred CcCccccccCc-eEccCcccchHHHHHHHHhcCCCCCCCc
Q 001690 263 CPLCNELMEDP-VAIVCGHSFERKAIQEHFQRGGKNCPTC 301 (1028)
Q Consensus 263 Cpic~~~~~dP-v~~~cght~c~~ci~~~~~~~~~~CP~~ 301 (1028)
||||++.+.+| ++++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 46899999999999999997 7899987
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.7e-07 Score=108.84 Aligned_cols=359 Identities=13% Similarity=0.178 Sum_probs=250.9
Q ss_pred HHHHHhhhcCC-ChHHHHHHHHHHHHhc--CChhhhHHHHhhccHHHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHH
Q 001690 332 FQNAIIKINSD-DQSRRKSALEEMKNIM--ELPQYAEKAAKAGLIPKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKE 406 (1028)
Q Consensus 332 i~~~~~~L~s~-~~~~~~~al~~L~~l~--~~~~~r~~i~~~g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~ 406 (1028)
+..+.+.|... ++..|.+++.+||.+- .+.+.-.-+...-.+|.|+.+|+. +.++...|+++|.+|..--+....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44455666544 8888999999999855 666655555566789999999998 999999999999999887667788
Q ss_pred HHHHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccC-
Q 001690 407 AIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHN- 482 (1028)
Q Consensus 407 ~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~- 482 (1028)
.++..++||.+++.|..- ++.++++.+|..+|+. .-..|.+ .|+|...+.+|.==+..+|+.|+.+..|.|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888999999999988765 8899999999999883 3455666 69999999998765667899999999999865
Q ss_pred -chhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh---c-CcchHHHHhhCCcHHHHHHHhcCCC----HHHHHH
Q 001690 483 -THFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR---L-DESSIKTLKDRQFIHNVIQMLSSNS----PVCKSA 553 (1028)
Q Consensus 483 -~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La---~-~~~~~~~i~~~g~i~~Lv~lL~s~~----~~~~~~ 553 (1028)
.+.-..+++ ++|.|..+|...+....+.++-++..++ . .++--..+...|.|....+||.-.. ......
T Consensus 326 ~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 326 RSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred CCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 333444444 5999999998888888888888888883 2 3444556788999999988887332 233455
Q ss_pred HHHHHHHHhcC-CHhHHHHHhCCCcHHHHHHHHhccCCC-------------hhHHHHHHHHHHHHHcC-CCC-------
Q 001690 554 CLKCIKTLIAH-SKMVKHLLLDPATIPLLLGLIQFVRSD-------------PHLKHEAAEILALMVGG-CQH------- 611 (1028)
Q Consensus 554 A~~aL~nL~~~-~~~~~~lv~~~g~v~~L~~lL~~~~~~-------------~~l~~~a~~~L~nL~~~-~~~------- 611 (1028)
.++.|..+|.+ +-....+.+. ++...|..+|...... ..+-+ ....+..|--. +.+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~-~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e-~~sl~~eLlp~~p~e~i~~~~~ 481 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKL-DIADTLKRILQGYSKSANASLHELLSRSPNELYE-LTSLIIELLPCLPVEGIFAVDC 481 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHh-hHHHHHHHHHhccCcCcccccccccccCcHHHHH-HHHHHheeecCCcccceeehhh
Confidence 66777777776 4556666666 7888887777642210 00000 00000000000 000
Q ss_pred -----------------Cc------------------------------ccc--cccchhhccc---------ccHHHHH
Q 001690 612 -----------------PQ------------------------------FEL--HHGLQELQSE---------HNVNVFL 633 (1028)
Q Consensus 612 -----------------~~------------------------------~~~--~~~~~~l~~~---------g~v~~Lv 633 (1028)
++ ... +.....|.+. ..+|.|+
T Consensus 482 ~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLv 561 (1051)
T KOG0168|consen 482 SLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLV 561 (1051)
T ss_pred hhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 00 000 0011112222 2456777
Q ss_pred HHhc-CCCHHHHHHHHHHHHHhhcCC--HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 634 QLIA-NTERETKIQFLHLLVKLCYKS--EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 634 ~lL~-~~~~~~~~~a~~aL~~L~~~~--~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
+... +.++.++..++++|..|.... +.++.++.. ...-..+...+.+.+..+...|..+.-.|.
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~-~~vSS~lAG~lsskD~~vlVgALQvAEiLm 628 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKN-TNVSSHLAGMLSSKDLTVLVGALQVAEILM 628 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhc-chHHHHHHhhhhcCCCeeEeehHHHHHHHH
Confidence 7776 678999999999999886644 778888887 666667778898888877777776666655
No 47
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.4e-10 Score=111.05 Aligned_cols=59 Identities=29% Similarity=0.620 Sum_probs=52.1
Q ss_pred CCCcccCcCccccccCceEccCcccchHHHHHHHHhcC--CCCCCCccccccccCCcCccc
Q 001690 257 PIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRG--GKNCPTCRQELLSLDLMPNLS 315 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~--~~~CP~~~~~l~~~~l~~n~~ 315 (1028)
+-..|.|.||++.-+|||++.|||-||+.||.+|+... ...||+|+..+....++|-+-
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 34689999999999999999999999999999999743 367999999999988888655
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.6e-07 Score=106.16 Aligned_cols=249 Identities=10% Similarity=0.117 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHHh--hcCcchHHHHhhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC-CHhHHHHHhCCCcHHHH
Q 001690 506 SQETRALMASALRNM--RLDESSIKTLKDRQFIHNVIQMLSS-NSPVCKSACLKCIKTLIAH-SKMVKHLLLDPATIPLL 581 (1028)
Q Consensus 506 ~~~~~~~a~~~L~~L--a~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nL~~~-~~~~~~lv~~~g~v~~L 581 (1028)
++..|.+++.=|+.+ .++++.-..+--.-++|.||.+|+. .+.++.-.|++||.+||.- |.....+|.+ ++||.|
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~-~aIPvl 259 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDE-HAIPVL 259 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecc-cchHHH
Confidence 555666666555554 2344433333334579999999985 5699999999999999965 6677777777 999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-HH
Q 001690 582 LGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS-EK 660 (1028)
Q Consensus 582 ~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~ 660 (1028)
++-|..-.- .++-+++..+|-.|++... .++...|++-..+.+|..-+...|..|+.+..|+|.+- ++
T Consensus 260 ~~kL~~Iey-iDvAEQ~LqALE~iSR~H~----------~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 260 LEKLLTIEY-IDVAEQSLQALEKISRRHP----------KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred HHhhhhhhh-hHHHHHHHHHHHHHHhhcc----------HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 998875432 6778999999999988442 57899999999999999888999999999999999854 22
Q ss_pred HHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCC-CCCCCCCCCCCCcccHHHHHHhccCCCC---HHHHHHH
Q 001690 661 VRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGN-PNGVPLPPSPGKETAINTVAAIFTCSPD---VEERSLA 736 (1028)
Q Consensus 661 ~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~-~~~~i~~~~~~~~~~i~~Lv~lL~~~~~---~~~~~~a 736 (1028)
--..+. .++|.|-.+|+..+....+.++-++..+.+.. .+.+..+.+ ...+.|....++|.-... .......
T Consensus 329 ~f~~v~---ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql-~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 329 EFHFVM---EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQL-CSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred cchHHH---HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHH-hchhHHHHHHHHHhcCcccccccchhHH
Confidence 222332 58999999999999988888888888887321 122222222 234677777777766542 2455778
Q ss_pred HHHHhcCCCCChHHHHHHHhccchHHHHHHHHhh
Q 001690 737 AGIISQLPKDDIYVDEVLCKSEALKAIHEVICSM 770 (1028)
Q Consensus 737 ~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~ 770 (1028)
++++.-++.+.+-..+.+.+.++...|..+|...
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 8899999998898899999999999999999853
No 49
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.87 E-value=7.7e-10 Score=114.39 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=64.1
Q ss_pred CCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHHHHhh
Q 001690 257 PIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQRE 327 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 327 (1028)
+.+-++|-||+++|+-|+++|||||||.-||..++. .++.||.|..++....++.|+.+..+|+.+.-..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 446799999999999999999999999999999987 6788999999999999999999999999987654
No 50
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.83 E-value=7.3e-10 Score=87.05 Aligned_cols=59 Identities=31% Similarity=0.618 Sum_probs=34.4
Q ss_pred CcccCcCccccccCceE-ccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhH
Q 001690 259 ESLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSI 320 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i 320 (1028)
+-++|++|.++|++||. ..|.|.||+.||.+.+. ..||+|..+....++.-|..|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 46899999999999996 58999999999987654 3499999999999999999998876
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=4.7e-05 Score=88.51 Aligned_cols=334 Identities=15% Similarity=0.189 Sum_probs=233.9
Q ss_pred CCChHHHHHHHHHHHHhcCChhhhHHHHhhccHHHHHHHHhc---CHHHHHHHHHHHHHHhcccH------HHH------
Q 001690 341 SDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD---TRLSTEAILKCLYFLAKYSD------IHK------ 405 (1028)
Q Consensus 341 s~~~~~~~~al~~L~~l~~~~~~r~~i~~~g~ip~Lv~lL~s---~~~~~~~A~~~L~~Ls~~~~------~~k------ 405 (1028)
|+-.+.++.|+..|..++ ..+|..+... ++++|+..|.. |+++-..++.+++++...++ +.+
T Consensus 34 sTL~eDRR~A~rgLKa~s--rkYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 34 STLLEDRRDAVRGLKAFS--RKYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred ccchhhHHHHHHHHHHHH--HHHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 455677888888888774 4566666654 56777777765 89999999999999977663 111
Q ss_pred ----HHHHH-hchhHHHHHhhccC--CchhHHHHHHHHh--hhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHH
Q 001690 406 ----EAIVE-AGAVRRIVKQICKG--ETMPEAIEVLSEL--TKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVL 476 (1028)
Q Consensus 406 ----~~i~~-~g~i~~lv~~L~~~--e~~~~A~~~L~~L--s~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L 476 (1028)
+.+.+ .+-|..++..+..+ .+|..++..|..+ ++..+.+..+...+-+|..|+.+|.+.-+.++..|+-.|
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 22233 67788888888887 8999999999998 345688999988899999999999998889999999999
Q ss_pred hccccCchhHHHHHHc-CCchhHHHhhcC-C---CHHHHHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHHHhc---CCC
Q 001690 477 QNLSHNTHFAVKMAEA-GYFQPFVACFNR-G---SQETRALMASALRNMR-LDESSIKTLKDRQFIHNVIQMLS---SNS 547 (1028)
Q Consensus 477 ~nL~~~~~n~~~i~~~-G~v~~Lv~lL~~-~---~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~---s~~ 547 (1028)
..|.....+..+++.- +++..|+.++.+ | ..-+...|...|-||- .+..|+..+.+.+.||.|.++|. .++
T Consensus 191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d 270 (970)
T KOG0946|consen 191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGD 270 (970)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccC
Confidence 9999999888888754 799999999943 2 2247788999999984 56678888888889999999887 233
Q ss_pred HH----------HHHHHHHHHHHHhcC-------CHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCC
Q 001690 548 PV----------CKSACLKCIKTLIAH-------SKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQ 610 (1028)
Q Consensus 548 ~~----------~~~~A~~aL~nL~~~-------~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~ 610 (1028)
.+ ....++.++..|..- +.+...+... +++..|..++.+...+..++-.+.-++++..++..
T Consensus 271 ~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss-~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~ 349 (970)
T KOG0946|consen 271 GEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSS-HLLDVLCTILMHPGVPADILTESIITVAEVVRGNA 349 (970)
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc-chHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhch
Confidence 11 123344555555322 1233445555 99999999998765557788888889999998754
Q ss_pred CCccccc-ccchhhc--ccccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCCh
Q 001690 611 HPQFELH-HGLQELQ--SEHNVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQP 684 (1028)
Q Consensus 611 ~~~~~~~-~~~~~l~--~~g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~ 684 (1028)
....... -.....- ....+-.++.+.. ...+..+..+++++......+.+-.. ..+..|+....++..
T Consensus 350 ~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~------~~l~tllp~~~nst~ 421 (970)
T KOG0946|consen 350 RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQR------KFLKTLLPSSTNSTS 421 (970)
T ss_pred HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHH------HHHHHHhhhhccccc
Confidence 3222110 0000000 1123334455554 45567888999999888887754333 233446655554444
No 52
>PTZ00429 beta-adaptin; Provisional
Probab=98.77 E-value=1.1e-05 Score=98.21 Aligned_cols=436 Identities=12% Similarity=0.087 Sum_probs=274.7
Q ss_pred hchhHHHHHhhccC--CchhHHHHH-HHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHH
Q 001690 411 AGAVRRIVKQICKG--ETMPEAIEV-LSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAV 487 (1028)
Q Consensus 411 ~g~i~~lv~~L~~~--e~~~~A~~~-L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~ 487 (1028)
.|-+..+-..|.+. ..+..++.. +..++... +.....+..++++.+.+...++-..-.|.+.+..+....
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-------DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-------DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-------CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH
Confidence 44555556666655 344555543 33344432 224577788889999999999999999998877555443
Q ss_pred HHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHh
Q 001690 488 KMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKM 567 (1028)
Q Consensus 488 ~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~ 567 (1028)
.+ ++..|.+-+.+.++.+|..|+.+|+++-.. .+.+. .++++.+.|.+.++-+|+.|+-++..+-...+.
T Consensus 104 lL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 104 LL----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 33 356778888999999999999999887442 22221 467788888999999999999999998664432
Q ss_pred HHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHH
Q 001690 568 VKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQF 647 (1028)
Q Consensus 568 ~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a 647 (1028)
++...|.++.|.++|...+ +.+..+|..+|..+.....+ . .-...+.+..|+..+...++-.|...
T Consensus 174 ---lv~~~~~~~~L~~LL~D~d--p~Vv~nAl~aL~eI~~~~~~--~-------l~l~~~~~~~Ll~~L~e~~EW~Qi~I 239 (746)
T PTZ00429 174 ---LFYQQDFKKDLVELLNDNN--PVVASNAAAIVCEVNDYGSE--K-------IESSNEWVNRLVYHLPECNEWGQLYI 239 (746)
T ss_pred ---cccccchHHHHHHHhcCCC--ccHHHHHHHHHHHHHHhCch--h-------hHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 3333388999999887543 57789999999999864321 1 11234456778888887788889888
Q ss_pred HHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCC
Q 001690 648 LHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCS 727 (1028)
Q Consensus 648 ~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~ 727 (1028)
+.+|......+..-. ...+..+...+++.++-|...|++++.+++... ..+.... .....-.+|+.++.+
T Consensus 240 L~lL~~y~P~~~~e~------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~--~~~rl~~pLv~L~ss- 309 (746)
T PTZ00429 240 LELLAAQRPSDKESA------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIER--CTVRVNTALLTLSRR- 309 (746)
T ss_pred HHHHHhcCCCCcHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHH--HHHHHHHHHHHhhCC-
Confidence 888866432221111 245666788899999999999999999998321 1111111 001123566777433
Q ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHH
Q 001690 728 PDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQ 807 (1028)
Q Consensus 728 ~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~ 807 (1028)
+ .+.+..++..|.-+....+. .+..-++...- +.++ ...+......+|..++...|...
T Consensus 310 ~-~eiqyvaLr~I~~i~~~~P~---------lf~~~~~~Ff~---~~~D-------p~yIK~~KLeIL~~Lane~Nv~~- 368 (746)
T PTZ00429 310 D-AETQYIVCKNIHALLVIFPN---------LLRTNLDSFYV---RYSD-------PPFVKLEKLRLLLKLVTPSVAPE- 368 (746)
T ss_pred C-ccHHHHHHHHHHHHHHHCHH---------HHHHHHHhhhc---ccCC-------cHHHHHHHHHHHHHHcCcccHHH-
Confidence 3 36776777665444432221 22222222210 0001 24466667888888885544332
Q ss_pred HHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCC
Q 001690 808 RQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQS 887 (1028)
Q Consensus 808 ~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 887 (1028)
+ +.-|.+...+.+.+.++.+..++++++..-.. .
T Consensus 369 --I-----L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~---------~------------------------------ 402 (746)
T PTZ00429 369 --I-----LKELAEYASGVDMVFVVEVVRAIASLAIKVDS---------V------------------------------ 402 (746)
T ss_pred --H-----HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH---------H------------------------------
Confidence 2 35566666677889999999999999854222 0
Q ss_pred CCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHH---hc
Q 001690 888 SCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVL---EK 964 (1028)
Q Consensus 888 ~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll---~~ 964 (1028)
...+|..|+++++.... +...++.++.++++.-.+ . . .+..|+.-+ .-
T Consensus 403 ------------------a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~--~--~------il~~L~~~~~~~~i 453 (746)
T PTZ00429 403 ------------------APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPE--L--L------MLDTLVTDYGADEV 453 (746)
T ss_pred ------------------HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCcc--H--H------HHHHHHHhhccccc
Confidence 12346788888876444 343467888888753211 0 0 122333222 23
Q ss_pred CChhHHHHHHHHHHHHHhh
Q 001690 965 GSLSAKTKALDLFQMIQKH 983 (1028)
Q Consensus 965 ~~~~~~~~A~~~l~~~~~~ 983 (1028)
.++..+....|+|-.|...
T Consensus 454 ~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 454 VEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred ccHHHHHHHHHHHHhhHhh
Confidence 5677888888888887743
No 53
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.76 E-value=3.1e-09 Score=78.58 Aligned_cols=36 Identities=33% Similarity=0.952 Sum_probs=23.3
Q ss_pred CcCccccccC----ceEccCcccchHHHHHHHHhcC---CCCCC
Q 001690 263 CPLCNELMED----PVAIVCGHSFERKAIQEHFQRG---GKNCP 299 (1028)
Q Consensus 263 Cpic~~~~~d----Pv~~~cght~c~~ci~~~~~~~---~~~CP 299 (1028)
||||++ |.+ |++++|||+||+.|+++|++.+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 898 9999999999999999999854 35677
No 54
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.74 E-value=6.1e-09 Score=77.74 Aligned_cols=39 Identities=46% Similarity=1.127 Sum_probs=36.2
Q ss_pred CcCccccccCce-EccCcccchHHHHHHHHh-cCCCCCCCc
Q 001690 263 CPLCNELMEDPV-AIVCGHSFERKAIQEHFQ-RGGKNCPTC 301 (1028)
Q Consensus 263 Cpic~~~~~dPv-~~~cght~c~~ci~~~~~-~~~~~CP~~ 301 (1028)
||||++.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999998 566789987
No 55
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=8.9e-07 Score=100.39 Aligned_cols=465 Identities=14% Similarity=0.139 Sum_probs=261.6
Q ss_pred chhHHHHHhhccC-----CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccC--c-
Q 001690 412 GAVRRIVKQICKG-----ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHN--T- 483 (1028)
Q Consensus 412 g~i~~lv~~L~~~-----e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~--~- 483 (1028)
.++..+..+|++. +.+.++...|.++-..++....+.- .|+ -+++.+...+..|--.|.|=... .
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~------IL~-~~~~~d~~~Rs~aGLlLKNnvr~~~~~ 82 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIY------ILI-RAKSEDVPTRSLAGLLLKNNVRGHYNS 82 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeE------EEe-cccccchhHHHHhhhhHhccccccccC
Confidence 4556666677654 6777778888777666554433321 111 12344555555555556553221 1
Q ss_pred --hhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001690 484 --HFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTL 561 (1028)
Q Consensus 484 --~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL 561 (1028)
......++.. +++-+.+.++-++.-.--++..+++...-... ..++|.|..+|.+++....+-|.+||..+
T Consensus 83 ~~~~~~~yiKs~----~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w---pelLp~L~~~L~s~d~n~~EgA~~AL~KI 155 (885)
T KOG2023|consen 83 IPSEVLDYIKSE----CLHGLGDASPLIRATVGIVITTIASTGGLQHW---PELLPQLCELLDSPDYNTCEGAFGALQKI 155 (885)
T ss_pred CChHHHHHHHHH----HHhhccCchHHHHhhhhheeeeeecccccccc---hhHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 1112222221 33444444443333222223333332221111 45789999999999999999999999999
Q ss_pred hcCCHhH-H-----HHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHH
Q 001690 562 IAHSKMV-K-----HLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQL 635 (1028)
Q Consensus 562 ~~~~~~~-~-----~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~l 635 (1028)
|.+.... + +-+. -.+|.++++.++.+ +.++..|...+-...-... + .-...-...+..+..+
T Consensus 156 cEDsa~~lds~~~~rpl~--~mipkfl~f~~h~s--pkiRs~A~~cvNq~i~~~~--q------al~~~iD~Fle~lFal 223 (885)
T KOG2023|consen 156 CEDSAQFLDSDVLTRPLN--IMIPKFLQFFKHPS--PKIRSHAVGCVNQFIIIQT--Q------ALYVHIDKFLEILFAL 223 (885)
T ss_pred HhhhHHHHhhhcccCchH--HhHHHHHHHHhCCC--hhHHHHHHhhhhheeecCc--H------HHHHHHHHHHHHHHHH
Confidence 9875322 1 1222 36899999998764 5766776663333222110 0 0011223467778888
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 001690 636 IANTERETKIQFLHLLVKLCYKS-EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKE 714 (1028)
Q Consensus 636 L~~~~~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~ 714 (1028)
-...+|+++.+..++|.-|..-. +.....+ .+.++..+...+..++.|...|+..+..+++...-.++... .-.
T Consensus 224 anD~~~eVRk~vC~alv~Llevr~dkl~phl---~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p--~l~ 298 (885)
T KOG2023|consen 224 ANDEDPEVRKNVCRALVFLLEVRPDKLVPHL---DNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQP--YLD 298 (885)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcHHhcccch---HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHH--HHH
Confidence 88899999999999998887644 3333333 35777788888888889999999988888843222121111 011
Q ss_pred ccHHHHHH----------hccCCCC---------------------------------------------HHHH---HHH
Q 001690 715 TAINTVAA----------IFTCSPD---------------------------------------------VEER---SLA 736 (1028)
Q Consensus 715 ~~i~~Lv~----------lL~~~~~---------------------------------------------~~~~---~~a 736 (1028)
..+|.|++ +|.+.++ ...| ++|
T Consensus 299 kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAa 378 (885)
T KOG2023|consen 299 KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAA 378 (885)
T ss_pred HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHH
Confidence 33344432 2220000 0111 233
Q ss_pred HHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhh-HHHHHHHHHHHhcCCCChHHHHHHhhc--
Q 001690 737 AGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDAS-LLEIALAALLHFTDPTKPELQRQVGKL-- 813 (1028)
Q Consensus 737 ~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~-~~e~~~~aL~~l~~~~~~~~~~~i~~~-- 813 (1028)
+.+|+| +.....++.++-+|+..- ....| +.|..+.++..++.+.... +..+
T Consensus 379 LDVLan-----------vf~~elL~~l~PlLk~~L----------~~~~W~vrEagvLAlGAIAEGcM~g----~~p~Lp 433 (885)
T KOG2023|consen 379 LDVLAN-----------VFGDELLPILLPLLKEHL----------SSEEWKVREAGVLALGAIAEGCMQG----FVPHLP 433 (885)
T ss_pred HHHHHH-----------hhHHHHHHHHHHHHHHHc----------CcchhhhhhhhHHHHHHHHHHHhhh----cccchH
Confidence 333443 334456677777777421 01234 3455556666666432211 2222
Q ss_pred CCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCcccc
Q 001690 814 EVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHG 893 (1028)
Q Consensus 814 ~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~ 893 (1028)
..||.|+++|.+..+.||.-++|.|...+..... +. +. ++|.
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~--------~~-~~---------~~f~-------------------- 475 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ--------DS-RD---------EYFK-------------------- 475 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc--------CC-hH---------hhhH--------------------
Confidence 3588999999999999999999999998875433 00 00 0000
Q ss_pred ccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccc-hhhHHHHHHhccchHHHHHHHh---cCChhH
Q 001690 894 AACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHST-LSHAIAVIVDSQGVLAILQVLE---KGSLSA 969 (1028)
Q Consensus 894 ~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~-~~~~~~~i~~~~~i~~l~~ll~---~~~~~~ 969 (1028)
-.+.+|++.+-+.|.+|+|+|..|.++|-.+... ...+...|. +.++..+. +.|--+
T Consensus 476 --------------pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL-----~~l~~af~kYQ~KNLlI 536 (885)
T KOG2023|consen 476 --------------PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYIL-----DQLVFAFGKYQKKNLLI 536 (885)
T ss_pred --------------HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHH-----HHHHHHHHHHhhcceeh
Confidence 1245667777788999999999999999755332 122222222 23333332 556666
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 001690 970 KTKALDLFQMIQKHTRITDT 989 (1028)
Q Consensus 970 ~~~A~~~l~~~~~~~~~~~~ 989 (1028)
---|...|...+.+.-+...
T Consensus 537 LYDAIgtlAdsvg~~Ln~~~ 556 (885)
T KOG2023|consen 537 LYDAIGTLADSVGHALNKPA 556 (885)
T ss_pred HHHHHHHHHHHHHHhcCcHH
Confidence 66677766666654444433
No 56
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.68 E-value=1.3e-08 Score=79.51 Aligned_cols=47 Identities=36% Similarity=0.739 Sum_probs=41.2
Q ss_pred CcccCcCccccccCceEccCccc-chHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHS-FERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght-~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
+++.|+||++.+.++++++|||. ||..|+.+|++ ....||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 36889999999999999999999 99999999998 7788999999874
No 57
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.8e-07 Score=96.27 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=157.7
Q ss_pred cCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHH
Q 001690 463 NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR-LDESSIKTLKDRQFIHNVIQ 541 (1028)
Q Consensus 463 ~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~ 541 (1028)
+.+.+-++.|..-|..++.+-+|...++..|+.++++..+.+++..+|..|+++|+..+ .+|..+..+.+.|+.+.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999995 57899999999999999999
Q ss_pred HhcC-CCHHHHHHHHHHHHHHhcCC-HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCccccccc
Q 001690 542 MLSS-NSPVCKSACLKCIKTLIAHS-KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHG 619 (1028)
Q Consensus 542 lL~s-~~~~~~~~A~~aL~nL~~~~-~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~ 619 (1028)
+|.+ ++..++..|+.|+.+|-.+. .....+... ++...|...+.+++....++++++..+..+........
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~-~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~------ 246 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL-NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE------ 246 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc-CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh------
Confidence 9985 45667899999999998876 556666666 78999999999876678999999999999988543222
Q ss_pred chhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 001690 620 LQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCY 656 (1028)
Q Consensus 620 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 656 (1028)
..+...+....++.+....+.++.+.++.++..+..
T Consensus 247 -d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 247 -DIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred -hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 245566777888888888888899888888776654
No 58
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.6e-08 Score=96.36 Aligned_cols=55 Identities=27% Similarity=0.740 Sum_probs=46.4
Q ss_pred CCCcccCcCccccccC--ceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcC
Q 001690 257 PIESLVCPLCNELMED--PVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP 312 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~d--Pv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 312 (1028)
...-|.||||++-+.. ||.+.|||.||+.||++-++ ....||.|++++.++.+++
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhhee
Confidence 3456999999998875 55689999999999999987 5567999999998887765
No 59
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.67 E-value=1.1e-08 Score=103.77 Aligned_cols=68 Identities=25% Similarity=0.471 Sum_probs=60.3
Q ss_pred CCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHHHHh
Q 001690 258 IESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQR 326 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 326 (1028)
..-++|-||.+.++-|+.++||||||.-||.+++. .+..||.|+.......++.+..++..++.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 35689999999999999999999999999999997 678999999998888888888888888777653
No 60
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.4e-08 Score=104.63 Aligned_cols=56 Identities=30% Similarity=0.601 Sum_probs=48.2
Q ss_pred CCCCCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCC
Q 001690 254 QVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDL 310 (1028)
Q Consensus 254 ~~~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l 310 (1028)
+..++..+.|.+|++-+.+|--+||||-||..||.+|..+ ...||.||+++.+..+
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 3455678999999999999999999999999999999973 4459999999876654
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=5.5e-06 Score=95.95 Aligned_cols=332 Identities=12% Similarity=0.167 Sum_probs=234.7
Q ss_pred hchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhc--CChhhHHHHHHHHhccccCch-
Q 001690 411 AGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHN--NNPNLSQKAHDVLQNLSHNTH- 484 (1028)
Q Consensus 411 ~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~--~~~~~~~~a~~~L~nL~~~~~- 484 (1028)
...|+.++.-+.+. +.|+.|+..|..+|+ .+|..++. .++++|+..|+. .|++....++.++.++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 34578888887776 899999999999998 78888885 789999999985 478999999999999977653
Q ss_pred -----h-----------HHHHH-HcCCchhHHHhhcCCCHHHHHHHHHHHHHh-h-cCcchHHHHh-hCCcHHHHHHHhc
Q 001690 485 -----F-----------AVKMA-EAGYFQPFVACFNRGSQETRALMASALRNM-R-LDESSIKTLK-DRQFIHNVIQMLS 544 (1028)
Q Consensus 485 -----n-----------~~~i~-~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L-a-~~~~~~~~i~-~~g~i~~Lv~lL~ 544 (1028)
+ ...++ ..+-|..|+..+...+-.+|..++..|.++ + ...+.+..+. -.-+|..|+.+|+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 1 23344 347889999999888888999999999998 3 4567777764 4678999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccC-CC-hhHHHHHHHHHHHHHcCCCCCcccccccchh
Q 001690 545 SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVR-SD-PHLKHEAAEILALMVGGCQHPQFELHHGLQE 622 (1028)
Q Consensus 545 s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~-~~-~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 622 (1028)
+....+|-.|+-.|..|..+....++++.-.++...|..++.... .+ ..+.+.|...|-||-..... ++..
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S-------NQ~~ 249 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS-------NQNF 249 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc-------hhhH
Confidence 988999999999999999998888887765589999999998643 33 46778999999999985442 3567
Q ss_pred hcccccHHHHHHHhc---CCCH------HHHH----HHHHHHHHhhcCC------HHHHHHHHhhhchHHHHHhhhcCCC
Q 001690 623 LQSEHNVNVFLQLIA---NTER------ETKI----QFLHLLVKLCYKS------EKVRNLIESNNDAITQLFSSLDSDQ 683 (1028)
Q Consensus 623 l~~~g~v~~Lv~lL~---~~~~------~~~~----~a~~aL~~L~~~~------~~~~~~i~~~~g~v~~Lv~Ll~~~~ 683 (1028)
+.+.+.||+|.++|. .++. ..+. .++.++..+.+-. ..+++.+.. .+++..|..++-++.
T Consensus 250 FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 250 FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS-SHLLDVLCTILMHPG 328 (970)
T ss_pred HhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cchHHHHHHHHcCCC
Confidence 888899999998876 2331 1121 4555555554422 445567777 899999999887773
Q ss_pred -h-hHHHHHHHHHHHhcCCC--CCCCCC----CCCCCCcccHHH-HHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHH
Q 001690 684 -P-VVRRWAMRLIHCISEGN--PNGVPL----PPSPGKETAINT-VAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVL 754 (1028)
Q Consensus 684 -~-~v~~~A~~~L~~Ls~~~--~~~~i~----~~~~~~~~~i~~-Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l 754 (1028)
+ +++..+.-++++.-+.. ...+.. ..++.-...|-. ++.+..+......|.++..++-.+...|.+.++.+
T Consensus 329 vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~ 408 (970)
T KOG0946|consen 329 VPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKF 408 (970)
T ss_pred CcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence 3 77777777776654211 111111 110000011222 23344444444666677666666666566555443
No 62
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.64 E-value=2.4e-08 Score=103.29 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=40.4
Q ss_pred CcccCcCccccccCc--------eEccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNELMEDP--------VAIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dP--------v~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
++..||||++.+.+| ++++|||+||+.||.+|++ ...+||.||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 578999999987663 4568999999999999987 5779999999875
No 63
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.64 E-value=7.5e-07 Score=99.43 Aligned_cols=224 Identities=15% Similarity=0.168 Sum_probs=155.4
Q ss_pred cHHHHHHHHhc---CHHHHHHHHHHHHHHhcccHHHHHHHHH-h-----chhHHHHHhhccC--CchhHHHHHHHHhhhc
Q 001690 372 LIPKLVEFLKD---TRLSTEAILKCLYFLAKYSDIHKEAIVE-A-----GAVRRIVKQICKG--ETMPEAIEVLSELTKR 440 (1028)
Q Consensus 372 ~ip~Lv~lL~s---~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-~-----g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~ 440 (1028)
+...++.+|+. +.++....+..+..+..+++.....+.. . ....++++.+.++ .....|+..|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 45555666654 7788888888888887777444444444 1 2477888877776 6788888888888654
Q ss_pred hhhhhhhhcccchHHHHHHHhhc----CChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhh-----c--CCCHHH
Q 001690 441 ETLGEKIGNTKDCITIMVSLLHN----NNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF-----N--RGSQET 509 (1028)
Q Consensus 441 ~~~~~~i~~~~g~I~~Lv~lL~~----~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL-----~--~~~~~~ 509 (1028)
......... .+.++.++..+++ ++...+..|+.+|.+|...++.+..+.+.|+++.|+.+| . ..+..+
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 433333322 4678888888774 455667899999999999999999999999999999999 2 334568
Q ss_pred HHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCH--hHHHHHhCCCcHHHHHHHHh
Q 001690 510 RALMASALRNMRLDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHSK--MVKHLLLDPATIPLLLGLIQ 586 (1028)
Q Consensus 510 ~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~--~~~~lv~~~g~v~~L~~lL~ 586 (1028)
+..++-+++.|+.+++....+.+.+.|+.|+++++ +...++.+.++.+|.||...+. ....++.. |+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~-~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC-GLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH--HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc-cHHHHHHHHhc
Confidence 88999999999999999999999999999999998 5678999999999999988765 88888886 55555544444
Q ss_pred ccCCChhHHHH
Q 001690 587 FVRSDPHLKHE 597 (1028)
Q Consensus 587 ~~~~~~~l~~~ 597 (1028)
..-+|+++.+.
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 33334555443
No 64
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.62 E-value=6.1e-06 Score=93.48 Aligned_cols=333 Identities=11% Similarity=0.101 Sum_probs=216.2
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhh----hchHHHHHhhhcCCChhHHHHHHHHHHHhcCCC
Q 001690 627 HNVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEKVRNLIESN----NDAITQLFSSLDSDQPVVRRWAMRLIHCISEGN 701 (1028)
Q Consensus 627 g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~----~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~ 701 (1028)
..+..++.++. .+.+++...++..+..|....+.....+.+. .+...+++.++..++.-+...|..+|..|...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 46677777777 4567788888888888888876666666551 246788889999998899999999999998433
Q ss_pred CCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCC
Q 001690 702 PNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPA 781 (1028)
Q Consensus 702 ~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~ 781 (1028)
... .... ........|...|.++++...+..|+..++.+.. .+..+..+.+.++++.|+.+|+...
T Consensus 133 ~~~-~~~~--~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~---------- 198 (429)
T cd00256 133 LAK-MEGS--DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNAT---------- 198 (429)
T ss_pred ccc-cchh--HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhcc----------
Confidence 321 1100 0011223455666655444556667788888877 6778888999999999999998520
Q ss_pred cchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcC-CHHHHHHHHHHHHhhhhccccccc-ccccccccc
Q 001690 782 CQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTG-SSLAKQRAASALADLSQSTSVSVS-NATLTAKQT 859 (1028)
Q Consensus 782 ~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-~~~vk~~Aa~aL~~ls~~~~~~~~-~~~l~~~~~ 859 (1028)
.....+=.++-.++-++ -+++........+.||.|+++++.. .+.|-|-+..+|.|+...... .. .++.....-
T Consensus 199 -~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~-~~~~~~~~~~mv 274 (429)
T cd00256 199 -LGFQLQYQSIFCIWLLT--FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD-REVKKTAALQMV 274 (429)
T ss_pred -ccHHHHHHHHHHHHHHh--ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc-cchhhhHHHHHH
Confidence 12344444555555555 3444545567789999999999965 567888899999999875422 00 000000000
Q ss_pred cccCchhhHhhhhhh---------------------c---ccccCC-----CCCCCCCCccccc--cCCcccchhhh--h
Q 001690 860 KTLMPMFDMTKLLLS---------------------M---SWCCSS-----WGDHQSSCSVHGA--ACSPRETFCLV--K 906 (1028)
Q Consensus 860 ~~~~~~~~~~~~l~~---------------------~---~~~~~~-----~~~~~~~c~~h~~--~~~~~~~~~l~--~ 906 (1028)
+-...+++..|.. . +..+.. ...+-...|+|.. +.. +|...+- +
T Consensus 275 --~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~-EN~~kf~~~~ 351 (429)
T cd00256 275 --QCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR-ENADRLNEKN 351 (429)
T ss_pred --HcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH-HHHHHHHhcc
Confidence 0000111111111 1 111110 1122245788854 222 1111122 2
Q ss_pred cCcchhHHhhhc-CCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhh
Q 001690 907 ADAVKPLVRNLN-DMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKH 983 (1028)
Q Consensus 907 ~gai~~Lv~lL~-~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~ 983 (1028)
...++.|+++|+ +.|+.+...|+.=++.+.+.. ..|...+.+.||=..+.+++.|+|++++..|+-++++++.+
T Consensus 352 ~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~---P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 352 YELLKILIHLLETSVDPIILAVACHDIGEYVRHY---PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC---ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 346789999996 778888888888889888542 45778889999999999999999999999999999998743
No 65
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.59 E-value=1.8e-08 Score=76.32 Aligned_cols=40 Identities=45% Similarity=1.056 Sum_probs=33.5
Q ss_pred cCcCcccccc---CceEccCcccchHHHHHHHHhcCCCCCCCcc
Q 001690 262 VCPLCNELME---DPVAIVCGHSFERKAIQEHFQRGGKNCPTCR 302 (1028)
Q Consensus 262 ~Cpic~~~~~---dPv~~~cght~c~~ci~~~~~~~~~~CP~~~ 302 (1028)
.||||++.|. .++.++|||.|+..||.+|++. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999884 4556899999999999999985 56999996
No 66
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.55 E-value=2.8e-05 Score=84.89 Aligned_cols=323 Identities=10% Similarity=0.121 Sum_probs=215.5
Q ss_pred cHHHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHHHHHH-------hchhHHHHHhhccC--CchhHHHHHHHHhhhc
Q 001690 372 LIPKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKEAIVE-------AGAVRRIVKQICKG--ETMPEAIEVLSELTKR 440 (1028)
Q Consensus 372 ~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-------~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~ 440 (1028)
++-.++.+++. ..+...-++..+..+-..+ ..+..+.+ .-..+..+.+|..+ -........+..++..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d-~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED-RSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 56667788876 4455555555555554433 33444332 12367788888877 3334466667666553
Q ss_pred hhhhhhhhcccchHHHHHHHhhc-CChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhc--CCCHHHHHHHHHHH
Q 001690 441 ETLGEKIGNTKDCITIMVSLLHN-NNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFN--RGSQETRALMASAL 517 (1028)
Q Consensus 441 ~~~~~~i~~~~g~I~~Lv~lL~~-~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L 517 (1028)
-..+...+...=....|-..+++ .+++...-|+.+|..+...++.+..++.+.++..++..+. ..+-.+|..+.-++
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 22221111111133444555555 6778888999999999999999999999999999999983 34567889999999
Q ss_pred HHhhcCcchHHHHhhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCC-------HhHHHHHhCCCcHHHHHHHHhc-c
Q 001690 518 RNMRLDESSIKTLKDRQFIHNVIQMLSSN-SPVCKSACLKCIKTLIAHS-------KMVKHLLLDPATIPLLLGLIQF-V 588 (1028)
Q Consensus 518 ~~La~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nL~~~~-------~~~~~lv~~~g~v~~L~~lL~~-~ 588 (1028)
+.|..++...+.+...+.|+.|++++++. ..++-+-++.++.|+...+ .....++.. ++ ++-++.|.. .
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v-~k~l~~L~~rk 302 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KV-LKTLQSLEERK 302 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-Cc-hHHHHHHHhcC
Confidence 99999988888887889999999999854 4778889999999998766 334566664 44 444555543 3
Q ss_pred CCChhHHHHHHHHH-------HHHHcC--------------CCCCccc--ccccchhhccc--ccHHHHHHHhcCC-CHH
Q 001690 589 RSDPHLKHEAAEIL-------ALMVGG--------------CQHPQFE--LHHGLQELQSE--HNVNVFLQLIANT-ERE 642 (1028)
Q Consensus 589 ~~~~~l~~~a~~~L-------~nL~~~--------------~~~~~~~--~~~~~~~l~~~--g~v~~Lv~lL~~~-~~~ 642 (1028)
-++..+......+- ..|+.- ++.++.. =.++...+-+. ..+..|+++|... +|.
T Consensus 303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI 382 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence 33344333222211 122210 1111110 01122222222 2577899999954 588
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 643 TKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 643 ~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
+..-|+.=+...-...+..+..+.+ -||=..+++|+.+++++||-.|..++..|.
T Consensus 383 iL~VAc~DIge~Vr~yP~gk~vv~k-~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPEGKAVVEK-YGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred eeehhhhhHHHHHHhCchHhHHHHH-hchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 8777777777777777888888988 899999999999999999999999988775
No 67
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.9e-05 Score=88.52 Aligned_cols=434 Identities=15% Similarity=0.133 Sum_probs=237.7
Q ss_pred chHHHHHHHhh---cCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHH-h-hcCcch
Q 001690 452 DCITIMVSLLH---NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRN-M-RLDESS 526 (1028)
Q Consensus 452 g~I~~Lv~lL~---~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~-L-a~~~~~ 526 (1028)
.++..+..+|+ |+++.++.++...+.++-..++....+ --++--+++.+..+|..|--.|.| + +.....
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL------~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYL------IYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhcee------eEEEecccccchhHHHHhhhhHhccccccccCC
Confidence 56677777876 578888999888888876555422111 111111234444444444333433 2 222221
Q ss_pred HHHHhhCCcHH-HHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001690 527 IKTLKDRQFIH-NVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALM 605 (1028)
Q Consensus 527 ~~~i~~~g~i~-~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL 605 (1028)
...+. +.|. ..+.-+...++-+|...--++..+.+...... -+.++|.|.++|.+.+. ...+-|..+|..+
T Consensus 84 ~~~~~--~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~----wpelLp~L~~~L~s~d~--n~~EgA~~AL~KI 155 (885)
T KOG2023|consen 84 PSEVL--DYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQH----WPELLPQLCELLDSPDY--NTCEGAFGALQKI 155 (885)
T ss_pred ChHHH--HHHHHHHHhhccCchHHHHhhhhheeeeeeccccccc----chhHHHHHHHHhcCCcc--cccchhHHHHHHH
Confidence 11111 1111 12233333444322222112222222211100 02579999999987653 4568999999999
Q ss_pred HcCCCCCcccccccchhh--cccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHH-HHHHHhhhchHHHHHhhhcCC
Q 001690 606 VGGCQHPQFELHHGLQEL--QSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKV-RNLIESNNDAITQLFSSLDSD 682 (1028)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l--~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~-~~~i~~~~g~v~~Lv~Ll~~~ 682 (1028)
|..+.+.-. .... --.-.+|+++.+.++++|.++..|+.++...-...... -..+ ..-++.|..+....
T Consensus 156 cEDsa~~ld-----s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i---D~Fle~lFalanD~ 227 (885)
T KOG2023|consen 156 CEDSAQFLD-----SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI---DKFLEILFALANDE 227 (885)
T ss_pred HhhhHHHHh-----hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH---HHHHHHHHHHccCC
Confidence 985431100 0000 01236899999999999999999999887765544221 1112 24667788888888
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHh--ccch
Q 001690 683 QPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCK--SEAL 760 (1028)
Q Consensus 683 ~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~--~g~v 760 (1028)
+++||.+.+.+|..|.+-+++ .+..++ .+.++-.+..-.+.+ +++...|+..+..++... ..+..+.. ...+
T Consensus 228 ~~eVRk~vC~alv~Llevr~d-kl~phl---~~IveyML~~tqd~d-E~VALEACEFwla~aeqp-i~~~~L~p~l~kli 301 (885)
T KOG2023|consen 228 DPEVRKNVCRALVFLLEVRPD-KLVPHL---DNIVEYMLQRTQDVD-ENVALEACEFWLALAEQP-ICKEVLQPYLDKLI 301 (885)
T ss_pred CHHHHHHHHHHHHHHHHhcHH-hcccch---HHHHHHHHHHccCcc-hhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHH
Confidence 999999999999999966654 444442 244444444444444 467778888877777633 32222222 2345
Q ss_pred HHHHHHHHhhc----------C------------------CCCCCC--------------CCCcchhhHHHH----HHHH
Q 001690 761 KAIHEVICSMD----------G------------------RHNGIR--------------TPACQDASLLEI----ALAA 794 (1028)
Q Consensus 761 ~~L~~lL~~~~----------~------------------~~~~~~--------------~~~~~~~~~~e~----~~~a 794 (1028)
|.|++-+.-.+ + +..|.. ..+....|-+.. +..+
T Consensus 302 PvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDV 381 (885)
T KOG2023|consen 302 PVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDV 381 (885)
T ss_pred HHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHH
Confidence 55554332110 0 000000 000001122221 2222
Q ss_pred HHHhcCCCChHHHHHHhhcCC----HHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhh
Q 001690 795 LLHFTDPTKPELQRQVGKLEV----YPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTK 870 (1028)
Q Consensus 795 L~~l~~~~~~~~~~~i~~~~~----i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 870 (1028)
|++ +..+.. +|.|-+.|.+....+|+.+..||+.++.+.-+ | ++.
T Consensus 382 Lan------------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~----g---------------~~p 430 (885)
T KOG2023|consen 382 LAN------------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ----G---------------FVP 430 (885)
T ss_pred HHH------------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh----h---------------ccc
Confidence 222 222333 45555566677888999999999999876444 0 000
Q ss_pred hhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHH
Q 001690 871 LLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIV 950 (1028)
Q Consensus 871 ~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~ 950 (1028)
.|+ ..|+-|+.+|.+.-+-||..+.|.|+++..=-.. +..-+.+.
T Consensus 431 ~Lp----------------------------------eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~-~~~~~~f~ 475 (885)
T KOG2023|consen 431 HLP----------------------------------ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ-DSRDEYFK 475 (885)
T ss_pred chH----------------------------------HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc-CChHhhhH
Confidence 111 1378899999999999999999999988621000 00001111
Q ss_pred hccchHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001690 951 DSQGVLAILQVLEKGSLSAKTKALDLFQMIQ 981 (1028)
Q Consensus 951 ~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~ 981 (1028)
..+..|++-+-.++..+||.|.-++..+-
T Consensus 476 --pvL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 476 --PVLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 12334444444889999999999987665
No 68
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.51 E-value=2.2e-06 Score=95.67 Aligned_cols=230 Identities=14% Similarity=0.155 Sum_probs=155.2
Q ss_pred chHHHHHHHhhc--CChhhHHHHHHHHhccccCchhH-HHHHH------cCCchhHHHhhcCCCHHHHHHHHHHHHHhhc
Q 001690 452 DCITIMVSLLHN--NNPNLSQKAHDVLQNLSHNTHFA-VKMAE------AGYFQPFVACFNRGSQETRALMASALRNMRL 522 (1028)
Q Consensus 452 g~I~~Lv~lL~~--~~~~~~~~a~~~L~nL~~~~~n~-~~i~~------~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~ 522 (1028)
+....++.+|+. .++++.+..+..+..+...+..+ ..+.. .....++++++..++.-++..|+..|+.|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467777777773 58889999999999987666443 33333 1267889999999999999999999999955
Q ss_pred CcchHHHHhhCCcHHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHH-----hccCCChh
Q 001690 523 DESSIKTLKDRQFIHNVIQMLSS----NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLI-----QFVRSDPH 593 (1028)
Q Consensus 523 ~~~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL-----~~~~~~~~ 593 (1028)
....+..-...+.++.++..|.+ .+...+..|+.+|.+|...++.|..+.+. |+++.|..++ ..+.....
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~-~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS-NGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH-HHHHHHHHHHH---------HHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc-CcHHHHHHHHHhhcccCCCCchh
Confidence 44433333225677888888874 34456799999999999999999999997 9999999999 33444578
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHH-HHHHHHhhhch
Q 001690 594 LKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEK-VRNLIESNNDA 671 (1028)
Q Consensus 594 l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~-~~~~i~~~~g~ 671 (1028)
++.++.-++|.|+..+. ....+...+.|+.|+.+++ +....+..-++.+|.|+...+.. +...|.. .|+
T Consensus 214 l~Y~~ll~lWlLSF~~~--------~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~ 284 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPE--------IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGL 284 (312)
T ss_dssp HHHHHHHHHHHHTTSHH--------HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-H
T ss_pred HHHHHHHHHHHHhcCHH--------HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccH
Confidence 89999999999998542 3567888889999999999 56677888999999999988752 4555555 455
Q ss_pred HHHHHhhhcC--CChhHHHHHH
Q 001690 672 ITQLFSSLDS--DQPVVRRWAM 691 (1028)
Q Consensus 672 v~~Lv~Ll~~--~~~~v~~~A~ 691 (1028)
++.+-.|... +|+++.+.-.
T Consensus 285 l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 285 LKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHH
Confidence 5555444433 3556665443
No 69
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.50 E-value=4.7e-08 Score=77.54 Aligned_cols=44 Identities=45% Similarity=0.862 Sum_probs=31.5
Q ss_pred CcccCcCccccccCceE-ccCcccchHHHHHHHHh-cCCCCCCCcc
Q 001690 259 ESLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQ-RGGKNCPTCR 302 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~-~~~~~CP~~~ 302 (1028)
-.+.|||++..|.|||. ..|||+|++.+|.+|+. .+...||+.+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 47999999999999998 58999999999999994 3456899943
No 70
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.48 E-value=1e-07 Score=72.73 Aligned_cols=43 Identities=40% Similarity=1.015 Sum_probs=38.5
Q ss_pred cCcCccccccCceEcc-CcccchHHHHHHHHhcCCCCCCCcccc
Q 001690 262 VCPLCNELMEDPVAIV-CGHSFERKAIQEHFQRGGKNCPTCRQE 304 (1028)
Q Consensus 262 ~Cpic~~~~~dPv~~~-cght~c~~ci~~~~~~~~~~CP~~~~~ 304 (1028)
.|+||++.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888765 999999999999998767889999875
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00046 Score=81.01 Aligned_cols=285 Identities=12% Similarity=0.173 Sum_probs=173.0
Q ss_pred hhHHHHHhhccC------CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhH
Q 001690 413 AVRRIVKQICKG------ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFA 486 (1028)
Q Consensus 413 ~i~~lv~~L~~~------e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~ 486 (1028)
.+-.+++.|+++ -+.-.|+.+|.+++.-+.. ....|...+++++.++-+++.|+.++..+-....+-
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~Ema-------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMA-------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHh-------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 344555565554 5667788888888664332 356778888999999999999998888775554433
Q ss_pred HHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc-CcchHHHHhhCCcHHHHHHHhc----C-----------CCHHH
Q 001690 487 VKMAEAGYFQPFVACFNRGSQETRALMASALRNMRL-DESSIKTLKDRQFIHNVIQMLS----S-----------NSPVC 550 (1028)
Q Consensus 487 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~----s-----------~~~~~ 550 (1028)
..+ .+++...+|.+.+..+-...+..+..++. +++.-....+ .++.||..|+ + ++|..
T Consensus 177 ~e~----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 177 VEH----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred HHH----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 322 45666777776666666666666666643 4444444443 5667776665 1 24667
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCC----ChhHHHHHHHHHHHHHcCCCCCcccccccchhhccc
Q 001690 551 KSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS----DPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSE 626 (1028)
Q Consensus 551 ~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~----~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~ 626 (1028)
+-..++.|.-|..++......+.+ .|-+...+.++ ...+-..++.++..+-.... ...
T Consensus 251 Qi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~-------------Lrv 312 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG-------------LRV 312 (866)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCCch-------------HHH
Confidence 778888888777776555544442 12222222111 01112222222222221111 111
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 001690 627 HNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVP 706 (1028)
Q Consensus 627 g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i 706 (1028)
-++..|-.+|.+.+..+|+-++..|..+-..++.+...- -..+++-|++++.-+|+.|..++..|.+. . .+
T Consensus 313 lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH------r~tIleCL~DpD~SIkrralELs~~lvn~-~--Nv 383 (866)
T KOG1062|consen 313 LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH------RSTILECLKDPDVSIKRRALELSYALVNE-S--NV 383 (866)
T ss_pred HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH------HHHHHHHhcCCcHHHHHHHHHHHHHHhcc-c--cH
Confidence 245666667777778888888888877776665443322 23467778899999999999999999832 1 22
Q ss_pred CCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCC
Q 001690 707 LPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPK 745 (1028)
Q Consensus 707 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~ 745 (1028)
...++.|+..|.+.+ ++.+...++-+..++.
T Consensus 384 -------~~mv~eLl~fL~~~d-~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 384 -------RVMVKELLEFLESSD-EDFKADIASKIAELAE 414 (866)
T ss_pred -------HHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHH
Confidence 235777888888884 4777666665555544
No 72
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.4e-06 Score=98.89 Aligned_cols=54 Identities=30% Similarity=0.682 Sum_probs=50.1
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcC
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP 312 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 312 (1028)
.-+.||.|..-++|-|++.|||.||..|++..+....+.||.|+..|...++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 458999999999999999999999999999999999999999999998877765
No 73
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0029 Score=74.00 Aligned_cols=341 Identities=12% Similarity=0.081 Sum_probs=203.6
Q ss_pred HHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhc----cC---CchhHHHHHHHHhhhchhhhhhhh
Q 001690 377 VEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQIC----KG---ETMPEAIEVLSELTKRETLGEKIG 448 (1028)
Q Consensus 377 v~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~----~~---e~~~~A~~~L~~Ls~~~~~~~~i~ 448 (1028)
.+-|++ .+.....|..++..++.-+- -.+.+|.++..|. +. ..++..+.+|..+|.+-+......
T Consensus 96 l~tL~~~ep~~~s~Aaq~va~IA~~El-------P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~ 168 (859)
T KOG1241|consen 96 LRTLGSPEPRRPSSAAQCVAAIACIEL-------PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQ 168 (859)
T ss_pred HHHcCCCCCCccchHHHHHHHHHHhhC-------chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHH
Confidence 344444 44445555555555443220 0344455554444 33 367889999999988544445555
Q ss_pred cccchHHHHHHHhhc--CChhhHHHHHHHHhccccCc-hhHHHHHHcC-CchhHHHhhcCCCHHHHHHHHHHHHHhh-cC
Q 001690 449 NTKDCITIMVSLLHN--NNPNLSQKAHDVLQNLSHNT-HFAVKMAEAG-YFQPFVACFNRGSQETRALMASALRNMR-LD 523 (1028)
Q Consensus 449 ~~~g~I~~Lv~lL~~--~~~~~~~~a~~~L~nL~~~~-~n~~~i~~~G-~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~ 523 (1028)
..+..+..++.-.+. ++..++..|..+|.|-.... .|-..=.+.+ +++...+.-..++.+++..|..+|.++. ..
T Consensus 169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 556778888877763 46688889999999854322 1222222222 3445555557788889999999999884 33
Q ss_pred cchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHh----HHHHHhC--------------CCcHHHHHHHH
Q 001690 524 ESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKM----VKHLLLD--------------PATIPLLLGLI 585 (1028)
Q Consensus 524 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~----~~~lv~~--------------~g~v~~L~~lL 585 (1028)
-+....-........-+.-+++.++++.-.|+..=.++|...-. ....+.. .+++|.|+++|
T Consensus 249 Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L 328 (859)
T KOG1241|consen 249 YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELL 328 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHH
Confidence 33333333333455557778899999999998887777764211 1111111 15788899999
Q ss_pred hccCCC---h--hHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc----CCCHHHHHHHHHHHHHhhc
Q 001690 586 QFVRSD---P--HLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA----NTERETKIQFLHLLVKLCY 656 (1028)
Q Consensus 586 ~~~~~~---~--~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~----~~~~~~~~~a~~aL~~L~~ 656 (1028)
...+++ . .....|...|.-++.. .....+++.+.+++ +++=.-++.++.++.++-.
T Consensus 329 ~kqde~~d~DdWnp~kAAg~CL~l~A~~---------------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 329 TKQDEDDDDDDWNPAKAAGVCLMLFAQC---------------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred HhCCCCcccccCcHHHHHHHHHHHHHHH---------------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 763221 0 0112222223333332 22235555555554 5555566788889998888
Q ss_pred CC-HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHH
Q 001690 657 KS-EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSL 735 (1028)
Q Consensus 657 ~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~ 735 (1028)
.+ +....-+.. +++|.++.++..++--++..++|.|..+++.-+...+... .-...+..++.-|.+.+ -+..+
T Consensus 394 gp~~~~Lt~iV~--qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~--~l~~~l~~l~~gL~DeP--rva~N 467 (859)
T KOG1241|consen 394 GPEPDKLTPIVI--QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQE--LLQSKLSALLEGLNDEP--RVASN 467 (859)
T ss_pred CCchhhhhHHHh--hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHh--hhhHHHHHHHHHhhhCc--hHHHH
Confidence 87 444444554 8999999999977778999999999999954332222221 11234444555554443 45577
Q ss_pred HHHHHhcCCC
Q 001690 736 AAGIISQLPK 745 (1028)
Q Consensus 736 a~~~L~nL~~ 745 (1028)
+++++-+|+.
T Consensus 468 ~CWAf~~Lae 477 (859)
T KOG1241|consen 468 VCWAFISLAE 477 (859)
T ss_pred HHHHHHHHHH
Confidence 8888877763
No 74
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.39 E-value=2.6e-07 Score=67.90 Aligned_cols=39 Identities=44% Similarity=1.147 Sum_probs=36.1
Q ss_pred CcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCc
Q 001690 263 CPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTC 301 (1028)
Q Consensus 263 Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~ 301 (1028)
||||++...+|++++|||.||..|+.+|++.+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789987
No 75
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00027 Score=82.30 Aligned_cols=490 Identities=11% Similarity=0.082 Sum_probs=277.9
Q ss_pred hHHHHHhhccC-CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcC--ChhhHHHHHHHHhc-cccCchhHHHH
Q 001690 414 VRRIVKQICKG-ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNN--NPNLSQKAHDVLQN-LSHNTHFAVKM 489 (1028)
Q Consensus 414 i~~lv~~L~~~-e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~--~~~~~~~a~~~L~n-L~~~~~n~~~i 489 (1028)
+..+.+.++.+ ..+..|-.-|.+++..+ .++.+..|...|.+. ....+..|--.|.| |..+++.+..-
T Consensus 4 ~~~le~tlSpD~n~~~~Ae~~l~~~~~~n--------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~ 75 (859)
T KOG1241|consen 4 LELLEKTLSPDQNVRKRAEKQLEQAQSQN--------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQ 75 (859)
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHH
Confidence 34445555555 67777777777776532 245566666666543 45667777777887 44443322211
Q ss_pred -HHc-CCch---------hHHHhhcCCCHHHHHHHHHHHHHhhc--CcchHHHHhhCCcHHHHHHHhcCCCH-HHHHHHH
Q 001690 490 -AEA-GYFQ---------PFVACFNRGSQETRALMASALRNMRL--DESSIKTLKDRQFIHNVIQMLSSNSP-VCKSACL 555 (1028)
Q Consensus 490 -~~~-G~v~---------~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~~~~A~ 555 (1028)
.+. =.++ -+.+-|.+..|.....|+.+++.++. -|.++. .+.++.|+.....+.+ .+|+.++
T Consensus 76 ~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~sl 151 (859)
T KOG1241|consen 76 YQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESSL 151 (859)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHHH
Confidence 111 0111 12333444444445555566665542 222222 2456666666655444 4899999
Q ss_pred HHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCC-CCcccccccchhhcccccHHHHHH
Q 001690 556 KCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQ-HPQFELHHGLQELQSEHNVNVFLQ 634 (1028)
Q Consensus 556 ~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~-~~~~~~~~~~~~l~~~g~v~~Lv~ 634 (1028)
.+|+.+|.+-......-+...++..++.-+....+...++-.|..+|.|--.-.. +.. ...-.....+..++
T Consensus 152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~-------~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN-------NEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc-------cHhhhceeeeeeee
Confidence 9999999874222111122246666666666555556778888888888765221 111 12223334555556
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 001690 635 LIANTERETKIQFLHLLVKLCYKS-EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGK 713 (1028)
Q Consensus 635 lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~ 713 (1028)
.-.+++.+++..|..+|..+.+-. .....-|.+ .....-+.-+++++++|...+....+++++... ++...
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~--alfaitl~amks~~deValQaiEFWsticeEEi--D~~~e---- 296 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ--ALFAITLAAMKSDNDEVALQAIEFWSTICEEEI--DLAIE---- 296 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH--HHHHH----
Confidence 667888899999999999887654 333333433 233334456779999999999999998883211 11000
Q ss_pred cccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 001690 714 ETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALA 793 (1028)
Q Consensus 714 ~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~ 793 (1028)
.-.....+..+.-..-|-++ -.+++|.|+++|...++ ....+.|....+++
T Consensus 297 ------~~e~~d~~~~p~~~~fa~~a----------------~~~v~P~Ll~~L~kqde-------~~d~DdWnp~kAAg 347 (859)
T KOG1241|consen 297 ------YGEAVDQGLPPSSKYFARQA----------------LQDVVPVLLELLTKQDE-------DDDDDDWNPAKAAG 347 (859)
T ss_pred ------HHHHhhcCCCchhhHHHHHH----------------HhHhhHHHHHHHHhCCC-------CcccccCcHHHHHH
Confidence 00000000000001111111 13578999999985322 22335677777777
Q ss_pred HHHHhcCCCChHHHHHHhhcCCHHHHHH----HhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHh
Q 001690 794 ALLHFTDPTKPELQRQVGKLEVYPSLIR----VLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMT 869 (1028)
Q Consensus 794 aL~~l~~~~~~~~~~~i~~~~~i~~Lv~----lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~ 869 (1028)
++..+.+ ......++|..+. -+++++..-+..|+.|++.+-.+... .+..
T Consensus 348 ~CL~l~A--------~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~------~~Lt------------ 401 (859)
T KOG1241|consen 348 VCLMLFA--------QCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP------DKLT------------ 401 (859)
T ss_pred HHHHHHH--------HHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch------hhhh------------
Confidence 7766552 1233344554444 45577888888999999887654333 1100
Q ss_pred hhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHH
Q 001690 870 KLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVI 949 (1028)
Q Consensus 870 ~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i 949 (1028)
-...++++.++.+..++..-|+..+.|+|+.++ |... +..-...
T Consensus 402 ----------------------------------~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~-d~l~-e~~~n~~ 445 (859)
T KOG1241|consen 402 ----------------------------------PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA-DFLP-EAIINQE 445 (859)
T ss_pred ----------------------------------HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH-hhch-hhcccHh
Confidence 012467899999999888899999999999998 4321 1111122
Q ss_pred HhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhh--hh--------hhcccchHHHhhccc-----cchHHHHHHH
Q 001690 950 VDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRIT--DT--------LLQRSERILIQLLDD-----DALKKKVALV 1014 (1028)
Q Consensus 950 ~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~--~~--------~~~~~~~~Lv~~l~~-----~~~~~~aa~~ 1014 (1028)
...+-+..+++-+ +..|.+-.++.|++..+...-... .. |-+.....|+...+. .+.|..|=.+
T Consensus 446 ~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 446 LLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred hhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 2334444444444 556999999999999988433322 11 111111245554444 6677777777
Q ss_pred HHHhccCC
Q 001690 1015 LMQMNIIP 1022 (1028)
Q Consensus 1015 L~~l~~~~ 1022 (1028)
|..|=+..
T Consensus 525 LmElIk~s 532 (859)
T KOG1241|consen 525 LMELIKNS 532 (859)
T ss_pred HHHHHHcC
Confidence 77665543
No 76
>PHA02926 zinc finger-like protein; Provisional
Probab=98.34 E-value=3e-07 Score=91.11 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=39.8
Q ss_pred CCcccCcCccccccC---------ceEccCcccchHHHHHHHHhcC-----CCCCCCcccccc
Q 001690 258 IESLVCPLCNELMED---------PVAIVCGHSFERKAIQEHFQRG-----GKNCPTCRQELL 306 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~d---------Pv~~~cght~c~~ci~~~~~~~-----~~~CP~~~~~l~ 306 (1028)
..+..|+||++...+ ++..+|+|+||..||.+|.+.. ...||.||+.+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 367999999997643 3556999999999999999742 357999999875
No 77
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.6e-07 Score=104.98 Aligned_cols=68 Identities=37% Similarity=0.807 Sum_probs=59.5
Q ss_pred CCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHHHHhhh
Q 001690 258 IESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREI 328 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 328 (1028)
.+++.||||++.|++|++++|||+||+.|+..++. ....||.|+. . ...+.+|..+.++++.+...+.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCC
Confidence 47899999999999998899999999999999998 6788999996 3 3377799999999998887653
No 78
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.2e-05 Score=82.73 Aligned_cols=180 Identities=16% Similarity=0.216 Sum_probs=150.1
Q ss_pred cCCChHHHHHHHHHHHHhcCChhhhHHHHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHH
Q 001690 340 NSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIV 418 (1028)
Q Consensus 340 ~s~~~~~~~~al~~L~~l~~~~~~r~~i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv 418 (1028)
++.+.+.+..|++.|..++++-+|-..+...|+.++++..|.+ +..+|+.|+.++...+.+++..++.+.+.|+++.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3557788888999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HhhccC---CchhHHHHHHHHhhhch-hhhhhhhcccchHHHHHHHhhc--CChhhHHHHHHHHhccccCchhHHHHH-H
Q 001690 419 KQICKG---ETMPEAIEVLSELTKRE-TLGEKIGNTKDCITIMVSLLHN--NNPNLSQKAHDVLQNLSHNTHFAVKMA-E 491 (1028)
Q Consensus 419 ~~L~~~---e~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~I~~Lv~lL~~--~~~~~~~~a~~~L~nL~~~~~n~~~i~-~ 491 (1028)
..|... +++.+|+.++..|-++. .....+... ++...|...+++ .+...+..++..+.+|...+.....++ .
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~-~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL-NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc-CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999976 77889999999887654 455555664 559999999998 567888999999999876654333344 4
Q ss_pred cCCchhHHHhhcCCCHHHHHHHHHHHHHh
Q 001690 492 AGYFQPFVACFNRGSQETRALMASALRNM 520 (1028)
Q Consensus 492 ~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L 520 (1028)
.|....++.+....+.++++.+..++..+
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHH
Confidence 57777777777888888888888766655
No 79
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.30 E-value=4.9e-07 Score=68.29 Aligned_cols=41 Identities=32% Similarity=0.718 Sum_probs=35.1
Q ss_pred cCcCccccc---cCceEccCcccchHHHHHHHHhcCCCCCCCccc
Q 001690 262 VCPLCNELM---EDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQ 303 (1028)
Q Consensus 262 ~Cpic~~~~---~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~ 303 (1028)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 357789999999999999998 46678999975
No 80
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00027 Score=81.68 Aligned_cols=215 Identities=15% Similarity=0.117 Sum_probs=154.6
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc-CcchHHHHhh
Q 001690 454 ITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRL-DESSIKTLKD 532 (1028)
Q Consensus 454 I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~ 532 (1028)
-+-++.||++.-+-+++.|+.+|+.+........ ...+|.|+.-|.++++.++..|+.+++.|+. +|.+--.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--- 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--- 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc---
Confidence 3467889999999999999999998764332211 1368999999999999999999999999974 6665443
Q ss_pred CCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHH--HcCC
Q 001690 533 RQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALM--VGGC 609 (1028)
Q Consensus 533 ~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL--~~~~ 609 (1028)
.-|.+.++|. +.+-++.-.-++..++|+--.+ ++.+ ..+++|.+++.+.. .+.+...+..++... ..+.
T Consensus 219 --LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK--KLieplt~li~sT~-AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 219 --LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK--KLIEPITELMESTV-AMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred --ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh--hhhhHHHHHHHhhH-HHHHHHHHHHHheeehhccCC
Confidence 3477888886 5667777777777777775543 2333 48899999998643 245555555443322 2221
Q ss_pred CCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHH
Q 001690 610 QHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRW 689 (1028)
Q Consensus 610 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~ 689 (1028)
.+... .-.=+++.|=.++..+++.+++-.+-++..++...+.....- -+.+++.|...++.+|..
T Consensus 291 ~d~~a---------siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~------kdlIlrcL~DkD~SIRlr 355 (877)
T KOG1059|consen 291 SDHSA---------SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH------KDLILRCLDDKDESIRLR 355 (877)
T ss_pred CCcHH---------HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh------HHHHHHHhccCCchhHHH
Confidence 11111 112267888889999999999999999999987765544332 345677888999999999
Q ss_pred HHHHHHHhc
Q 001690 690 AMRLIHCIS 698 (1028)
Q Consensus 690 A~~~L~~Ls 698 (1028)
|.-+|..+-
T Consensus 356 ALdLl~gmV 364 (877)
T KOG1059|consen 356 ALDLLYGMV 364 (877)
T ss_pred HHHHHHHHh
Confidence 999999888
No 81
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.0011 Score=70.02 Aligned_cols=298 Identities=11% Similarity=0.139 Sum_probs=191.5
Q ss_pred HHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccC-ch----hHHHHHHcCCchhHHHhhcC
Q 001690 430 AIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHN-TH----FAVKMAEAGYFQPFVACFNR 504 (1028)
Q Consensus 430 A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~-~~----n~~~i~~~G~v~~Lv~lL~~ 504 (1028)
++.+|..|-+..+....+ +...|.|-.=|..++..++..++..+..+..+ +. ....++.+|+.+.++..+..
T Consensus 63 cVscLERLfkakegahla---pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLA---PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhhc---hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 556666653322211111 23444554445566777777777666655433 32 35566789999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHH--HHHhcCCCHHHHHHHHHHHHHHhc-CCHhHHHHHhCCCcHHHH
Q 001690 505 GSQETRALMASALRNMRLDESSIKTLKDRQFIHNV--IQMLSSNSPVCKSACLKCIKTLIA-HSKMVKHLLLDPATIPLL 581 (1028)
Q Consensus 505 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~L--v~lL~s~~~~~~~~A~~aL~nL~~-~~~~~~~lv~~~g~v~~L 581 (1028)
.+.++...|...+..++..+..-..|+.+....++ +.+-...+.-+|-.....+..+.+ +++.....-+. |.+..|
T Consensus 140 eddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkS-GLldlL 218 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKS-GLLDLL 218 (524)
T ss_pred CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhh-hHHHHH
Confidence 99999999999999999999999999998776655 333334455566667777777754 44555555555 888888
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCC-
Q 001690 582 LGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA--NTERETKIQFLHLLVKLCYKS- 658 (1028)
Q Consensus 582 ~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~--~~~~~~~~~a~~aL~~L~~~~- 658 (1028)
..-|+. +.+.-+..++......|+... |+.+.+.++|.|..+..++. +++|--+..++..+..+-.+.
T Consensus 219 eaElkG-teDtLVianciElvteLaete--------HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkea 289 (524)
T KOG4413|consen 219 EAELKG-TEDTLVIANCIELVTELAETE--------HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHhcC-CcceeehhhHHHHHHHHHHHh--------hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchH
Confidence 888764 344455677777777787743 24677899999999999998 556766666666555544332
Q ss_pred ------HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHH
Q 001690 659 ------EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEE 732 (1028)
Q Consensus 659 ------~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~ 732 (1028)
+.+.+.+. -++..-.++.+..+++....|.-++..|-....+.++... -......+++.-..+.+...-
T Consensus 290 imdvseeaiceali---iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllk--Tgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 290 IMDVSEEAICEALI---IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLK--TGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred HhhcCHHHHHHHHH---HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhc--cCChHHHHHHHHHhcccccch
Confidence 22222221 2445556677888999999999999999855555444333 122234444433333332244
Q ss_pred HHHHHHHHhcCCC
Q 001690 733 RSLAAGIISQLPK 745 (1028)
Q Consensus 733 ~~~a~~~L~nL~~ 745 (1028)
+.++..+|.+++.
T Consensus 365 qeaaihaLaaIag 377 (524)
T KOG4413|consen 365 QEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhc
Confidence 5566666666654
No 82
>PF05536 Neurochondrin: Neurochondrin
Probab=98.25 E-value=0.00073 Score=80.47 Aligned_cols=240 Identities=18% Similarity=0.135 Sum_probs=162.5
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCch----hHHHHHHcCCchhHHHhhcC-------CCHHHHHHHHHHHHH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTH----FAVKMAEAGYFQPFVACFNR-------GSQETRALMASALRN 519 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~----n~~~i~~~G~v~~Lv~lL~~-------~~~~~~~~a~~~L~~ 519 (1028)
+..+...+.+|++.+..-+-.++..+.++....+ ++..+.++=+.+-|-++|.+ +....+..++.+|+.
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3567788899998886666677788888877654 34567788667778888876 345678888899999
Q ss_pred hhcCcchHHHHhhCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHH
Q 001690 520 MRLDESSIKTLKDRQFIHNVIQMLSSNSP-VCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEA 598 (1028)
Q Consensus 520 La~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a 598 (1028)
++..++....----+-||.|++++.+++. .....|..+|..++.++++++.+++. |+++.|.+.+.++ +...+.|
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~-g~v~~L~ei~~~~---~~~~E~A 159 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLES-GAVPALCEIIPNQ---SFQMEIA 159 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhc-CCHHHHHHHHHhC---cchHHHH
Confidence 98876643221112469999999987776 99999999999999999999999999 9999999999874 3557999
Q ss_pred HHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHH-HHHHHh---hhchHHH
Q 001690 599 AEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKV-RNLIES---NNDAITQ 674 (1028)
Q Consensus 599 ~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~-~~~i~~---~~g~v~~ 674 (1028)
..+|.+++.... .+.... ..+.+ ...++.+-..+.......+..++..|..+-...+.. ...... .......
T Consensus 160 l~lL~~Lls~~~-~~~~~~-~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 160 LNLLLNLLSRLG-QKSWAE-DSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHhcc-hhhhhh-hHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 999999987432 111000 00000 124455666666666666777777777665544210 000000 0123334
Q ss_pred HHhhhcCC-ChhHHHHHHHHHHHhc
Q 001690 675 LFSSLDSD-QPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 675 Lv~Ll~~~-~~~v~~~A~~~L~~Ls 698 (1028)
|..++++. .+..|..|..+.+.|.
T Consensus 236 l~~iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 236 LRDILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55566655 3477778888888777
No 83
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.4e-07 Score=97.67 Aligned_cols=68 Identities=26% Similarity=0.548 Sum_probs=58.6
Q ss_pred CCCcccCcCccccccCceEc-cCcccchHHHHHHHHhcCCCCCCCccccccc-cCCcCccchhhhHHHHH
Q 001690 257 PIESLVCPLCNELMEDPVAI-VCGHSFERKAIQEHFQRGGKNCPTCRQELLS-LDLMPNLSLRSSIEEWK 324 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv~~-~cght~c~~ci~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~i~~~~ 324 (1028)
+..++.||||+++++...++ .|+|.||+.||..-++.++..||.||+.+.. ..|.++..+..+|.+.-
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 34689999999999988876 6999999999999999999999999999965 57888877777877654
No 84
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.6e-07 Score=91.69 Aligned_cols=56 Identities=27% Similarity=0.507 Sum_probs=48.3
Q ss_pred CCCCCCcccCcCccccccCceEccCcccchHHHHHH-HHhcCCCCCCCccccccccC
Q 001690 254 QVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQE-HFQRGGKNCPTCRQELLSLD 309 (1028)
Q Consensus 254 ~~~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~-~~~~~~~~CP~~~~~l~~~~ 309 (1028)
+..|..+|.|+||++.+.+|+.++|||.||..||-. |-.+....||.||+......
T Consensus 209 pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 209 PFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred CcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 444568999999999999999999999999999999 87766778999999875443
No 85
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.8e-07 Score=99.96 Aligned_cols=56 Identities=32% Similarity=0.665 Sum_probs=49.5
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcC----CCCCCCccccccccCCcCccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRG----GKNCPTCRQELLSLDLMPNLS 315 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~----~~~CP~~~~~l~~~~l~~n~~ 315 (1028)
+..||||++...-|+.+.|||.||..||-++|..+ ...||.|+..+..+++.|-+.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 89999999999999999999999999999999744 468999999998888776543
No 86
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=1.2e-06 Score=93.36 Aligned_cols=54 Identities=28% Similarity=0.687 Sum_probs=43.4
Q ss_pred CcccCcCccc-cccCce---Ec-cCcccchHHHHHHHHhcCCCCCCCccccccccCCcC
Q 001690 259 ESLVCPLCNE-LMEDPV---AI-VCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP 312 (1028)
Q Consensus 259 ~~~~Cpic~~-~~~dPv---~~-~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 312 (1028)
++..||+|+. ....|- .+ +|||+||+.|+.++|..+...||.|+.++...++.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 4678999987 234453 23 699999999999999878889999999998877554
No 87
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.22 E-value=0.004 Score=74.29 Aligned_cols=412 Identities=12% Similarity=0.113 Sum_probs=208.0
Q ss_pred HHHHhc---CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccCCchhHHHHHHHHhhhchhhhhhhhcccch
Q 001690 377 VEFLKD---TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDC 453 (1028)
Q Consensus 377 v~lL~s---~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~ 453 (1028)
.+.|++ |.++++.|..+...+-..-.+ .....-...++.+++.|.+.-.+-.|+.+|.-++..+-.-.........
T Consensus 574 l~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~i 652 (1233)
T KOG1824|consen 574 LQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEI 652 (1233)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHH
Confidence 445554 889999999888776543211 1111115667788888888777888899998887655333323233468
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhccccCc--hhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHh
Q 001690 454 ITIMVSLLHNNNPNLSQKAHDVLQNLSHNT--HFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLK 531 (1028)
Q Consensus 454 I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~--~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~ 531 (1028)
++.|...++......+.....++-.|..+. ..-..+++. ++.-+-.++...+..+...|...|..+...+.....-.
T Consensus 653 l~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~ 731 (1233)
T KOG1824|consen 653 LPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKI 731 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 899999888655555555555555554322 111222222 22233344455566677788888888876655544445
Q ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHh--CCCc-HHHHHHHHhccCCChhH----------HHHH
Q 001690 532 DRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLL--DPAT-IPLLLGLIQFVRSDPHL----------KHEA 598 (1028)
Q Consensus 532 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~--~~g~-v~~L~~lL~~~~~~~~l----------~~~a 598 (1028)
..-.++.++.+++|+-.. -.|..++.++ .+.++. ..+. ...|+.++..+-.+... -..+
T Consensus 732 ~~~iL~~ii~ll~Spllq--g~al~~~l~~------f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~c 803 (1233)
T KOG1824|consen 732 SNPILDEIIRLLRSPLLQ--GGALSALLLF------FQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKC 803 (1233)
T ss_pred hhhhHHHHHHHhhCcccc--chHHHHHHHH------HHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHH
Confidence 556788888888876433 2333333222 000110 0011 22333333321111000 1122
Q ss_pred HHHHHHHHc-------------------------------CCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHH
Q 001690 599 AEILALMVG-------------------------------GCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQF 647 (1028)
Q Consensus 599 ~~~L~nL~~-------------------------------~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a 647 (1028)
+++|...|. +..++. .......+.-..+++-+.+++.+++..|
T Consensus 804 vA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~------~~~s~~~e~~~~iieaf~sp~edvksAA 877 (1233)
T KOG1824|consen 804 VAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRR------KDLSPQNELKDTIIEAFNSPSEDVKSAA 877 (1233)
T ss_pred HHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccC------CCCCcchhhHHHHHHHcCCChHHHHHHH
Confidence 222222221 111110 1111222333455566667777777777
Q ss_pred HHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCCh--hHHHHHHH-HHHHhcCCCCCCCCCCCCCCCcccHHHHHHhc
Q 001690 648 LHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQP--VVRRWAMR-LIHCISEGNPNGVPLPPSPGKETAINTVAAIF 724 (1028)
Q Consensus 648 ~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~--~v~~~A~~-~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL 724 (1028)
..||.+++.++- ..-+|-+.....+... .+...+.+ .+...+- + .. -..++.++.+|
T Consensus 878 s~ALGsl~vgnl---------~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv---d--~~------~~~v~~IW~lL 937 (1233)
T KOG1824|consen 878 SYALGSLAVGNL---------PKYLPFILEQIESQPKRQYLLLHSLKEVIVSASV---D--GL------KPYVEKIWALL 937 (1233)
T ss_pred HHHhhhhhcCch---------HhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc---c--hh------hhhHHHHHHHH
Confidence 777777776441 1222222222222211 12111111 1111110 0 00 01223333332
Q ss_pred cCC---CCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCC
Q 001690 725 TCS---PDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDP 801 (1028)
Q Consensus 725 ~~~---~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~ 801 (1028)
-.. ..+..|.-.+.+|+.|+..+++- .+|.|-..+.+. .......+-...+|+-+
T Consensus 938 ~k~cE~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~--------------a~~~rs~vvsavKfsis 995 (1233)
T KOG1824|consen 938 FKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSE--------------ASNTRSSVVSAVKFSIS 995 (1233)
T ss_pred HHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCC--------------Ccchhhhhhheeeeeec
Confidence 221 11244556666777777666653 577777777752 12222223333455543
Q ss_pred CChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccc
Q 001690 802 TKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSV 847 (1028)
Q Consensus 802 ~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~ 847 (1028)
.++.-.+... ...|.-+..++++++.+|++.|-.++...+++.++
T Consensus 996 d~p~~id~~l-k~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 996 DQPQPIDPLL-KQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred CCCCccCHHH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 4443333222 23466788999999999999999999888887666
No 88
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.0011 Score=69.91 Aligned_cols=324 Identities=11% Similarity=0.139 Sum_probs=201.6
Q ss_pred HHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHH--HHhhcc-C-CchhHHHHHHHHhhh-c
Q 001690 367 AAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRI--VKQICK-G-ETMPEAIEVLSELTK-R 440 (1028)
Q Consensus 367 i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~l--v~~L~~-~-e~~~~A~~~L~~Ls~-~ 440 (1028)
++++|..|.++..... |..+-..|.+.+..++... ..-+.|.+......+ +++-.. . -.|-.....+-+++. +
T Consensus 124 vvNaeilklildcIggeddeVAkAAiesikrialfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS 202 (524)
T KOG4413|consen 124 VVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS 202 (524)
T ss_pred HhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 5678999999998888 8899999999999999887 555555543332221 111111 1 334444555555543 4
Q ss_pred hhhhhhhhcccchHHHHHHHhhc-CChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhc--CCCHHHHHHHHHH-
Q 001690 441 ETLGEKIGNTKDCITIMVSLLHN-NNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFN--RGSQETRALMASA- 516 (1028)
Q Consensus 441 ~~~~~~i~~~~g~I~~Lv~lL~~-~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~--~~~~~~~~~a~~~- 516 (1028)
++....... .|.+..|..-|+. .|.-+..++.+....|+..+..+..+.+.|.|+.+...+. +.+|--+..+.-.
T Consensus 203 pesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgf 281 (524)
T KOG4413|consen 203 PESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGF 281 (524)
T ss_pred HHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH
Confidence 444444444 6888888777774 6777788899999999998889999999999999988883 2333333333333
Q ss_pred ---HHHhhcCcchHHHHhhC--CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCC--cHHHHHHHHhccC
Q 001690 517 ---LRNMRLDESSIKTLKDR--QFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPA--TIPLLLGLIQFVR 589 (1028)
Q Consensus 517 ---L~~La~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g--~v~~L~~lL~~~~ 589 (1028)
+++.+..+-.-+++.+. -+|....+++...++..++.|+.+++.|.++.+..+.+.+. | +...++.-....+
T Consensus 282 gkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkT-gppaaehllarafdqn 360 (524)
T KOG4413|consen 282 GKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKT-GPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhcc-CChHHHHHHHHHhccc
Confidence 33333222222333331 23555667888899999999999999999998888887775 4 3444444444333
Q ss_pred CChhHHHHHHHHHHHHHcCCCCCc-cccc----ccch-----hh---cccccHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 001690 590 SDPHLKHEAAEILALMVGGCQHPQ-FELH----HGLQ-----EL---QSEHNVNVFLQLIANTERETKIQFLHLLVKLCY 656 (1028)
Q Consensus 590 ~~~~l~~~a~~~L~nL~~~~~~~~-~~~~----~~~~-----~l---~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 656 (1028)
.+.. ++.+..+|.+++.-...+. .+.+ .... .. ....-...+...+..+.|+++..+++++..++.
T Consensus 361 ahak-qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 361 AHAK-QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred ccch-HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 3322 4677778888886321110 0000 0000 00 011234567777888899999999999999998
Q ss_pred CCHHHHHHHHhhhchHHHHHhhhcCCC---hhHHHHHHHHHH
Q 001690 657 KSEKVRNLIESNNDAITQLFSSLDSDQ---PVVRRWAMRLIH 695 (1028)
Q Consensus 657 ~~~~~~~~i~~~~g~v~~Lv~Ll~~~~---~~v~~~A~~~L~ 695 (1028)
.+--...++.. .+.+.....-..... .+.+...++++.
T Consensus 440 qPWalkeifak-eefieiVtDastEhaKaakdAkYeccKAia 480 (524)
T KOG4413|consen 440 QPWALKEIFAK-EEFIEIVTDASTEHAKAAKDAKYECCKAIA 480 (524)
T ss_pred CcHHHHHHhcC-ccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence 88666666666 554444433221111 144555555554
No 89
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.18 E-value=0.0002 Score=81.79 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=169.6
Q ss_pred ccHHHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhchhhhhh
Q 001690 371 GLIPKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEK 446 (1028)
Q Consensus 371 g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~ 446 (1028)
.+++.++..|+. +..++..++.++ ...+. ..++..++..|.+. .++..++..|..+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al--~~~~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALAL--LAQED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHH--hccCC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 467888888854 555554433333 23332 12378888888877 478888888876533
Q ss_pred hhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcch
Q 001690 447 IGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESS 526 (1028)
Q Consensus 447 i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 526 (1028)
.++.+.|+.+|++.++.++..++.++... .....++|+.+|++.++.++..|+.+|+.+.
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----- 175 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP----- 175 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc-----
Confidence 68899999999999999998888777652 1234678999999999999999999999653
Q ss_pred HHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001690 527 IKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMV 606 (1028)
Q Consensus 527 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~ 606 (1028)
....++.|...+.+.++.+|..|+.+|..+... +++.++..+...... .....+..++...
T Consensus 176 -----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-----------~A~~~l~~~~~~~g~--~~~~~l~~~lal~- 236 (410)
T TIGR02270 176 -----RRLSESTLRLYLRDSDPEVRFAALEAGLLAGSR-----------LAWGVCRRFQVLEGG--PHRQRLLVLLAVA- 236 (410)
T ss_pred -----cccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHhccCc--cHHHHHHHHHHhC-
Confidence 445788899999999999999999999776432 456666664433222 1112223323222
Q ss_pred cCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhH
Q 001690 607 GGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVV 686 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v 686 (1028)
.. ..+++.|..++..+. ++..++.++..+- . ..+++.|+..+..+. +
T Consensus 237 ~~-----------------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg-----------~-p~av~~L~~~l~d~~--~ 283 (410)
T TIGR02270 237 GG-----------------PDAQAWLRELLQAAA--TRREALRAVGLVG-----------D-VEAAPWCLEAMREPP--W 283 (410)
T ss_pred Cc-----------------hhHHHHHHHHhcChh--hHHHHHHHHHHcC-----------C-cchHHHHHHHhcCcH--H
Confidence 21 136788888888744 8888888887653 2 578899999886554 9
Q ss_pred HHHHHHHHHHhcC
Q 001690 687 RRWAMRLIHCISE 699 (1028)
Q Consensus 687 ~~~A~~~L~~Ls~ 699 (1028)
+..|..++..++.
T Consensus 284 aR~A~eA~~~ItG 296 (410)
T TIGR02270 284 ARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999994
No 90
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.17 E-value=0.004 Score=72.28 Aligned_cols=508 Identities=13% Similarity=0.129 Sum_probs=246.6
Q ss_pred hhccHHHHHHHHhc------CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC------CchhHHHHHHHH
Q 001690 369 KAGLIPKLVEFLKD------TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG------ETMPEAIEVLSE 436 (1028)
Q Consensus 369 ~~g~ip~Lv~lL~s------~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~------e~~~~A~~~L~~ 436 (1028)
++=++|.|..+|++ ....|...+.+...++.-. .+..+- -+..+++.+..+ .++..++.+|..
T Consensus 505 salgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~--Gcsvlp---hl~~lv~ii~~gl~De~qkVR~itAlalsa 579 (1172)
T KOG0213|consen 505 SALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILS--GCSVLP---HLKPLVKIIEHGLKDEQQKVRTITALALSA 579 (1172)
T ss_pred HHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHh--cchhhh---hhHHHHHHHHHhhcccchhhhhHHHHHHHH
Confidence 34466777666654 1223333344443333322 122222 233445555444 455555555555
Q ss_pred hhhch-hhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCc-hhHHHHHHcCCchhHHHhhcCCCHHHHHHHH
Q 001690 437 LTKRE-TLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNT-HFAVKMAEAGYFQPFVACFNRGSQETRALMA 514 (1028)
Q Consensus 437 Ls~~~-~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~ 514 (1028)
|+... -+. |......+.+|.+=.++.-......-+.++..|+-.- ..-.......++-.+++-..+++++++.-.+
T Consensus 580 laeaa~Pyg--ie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivL 657 (1172)
T KOG0213|consen 580 LAEAATPYG--IEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVL 657 (1172)
T ss_pred HHHhcCCcc--hHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHH
Confidence 54421 111 1111234555555554332222222223333333221 1111111222344566666788889999888
Q ss_pred HHHHHhhcCcchHHHHhhCCcHHHHHHHhcC-------CCHHH-HHHH-------------HHHHHHHhcCCHhHHHHHh
Q 001690 515 SALRNMRLDESSIKTLKDRQFIHNVIQMLSS-------NSPVC-KSAC-------------LKCIKTLIAHSKMVKHLLL 573 (1028)
Q Consensus 515 ~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s-------~~~~~-~~~A-------------~~aL~nL~~~~~~~~~lv~ 573 (1028)
.++..++..+..-........+|.+..-... .+.+. .+.+ -+.+..+-..++..++++.
T Consensus 658 KVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~ 737 (1172)
T KOG0213|consen 658 KVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVA 737 (1172)
T ss_pred HHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHH
Confidence 8888887766655666666677776654321 11111 1111 1122222222333333333
Q ss_pred CCCcHHHHHHHHhccCCChhHHHHHH-HHHHHHHcCCCCCccccccc---chhhc------ccccHHHHHHHhcCCCHHH
Q 001690 574 DPATIPLLLGLIQFVRSDPHLKHEAA-EILALMVGGCQHPQFELHHG---LQELQ------SEHNVNVFLQLIANTERET 643 (1028)
Q Consensus 574 ~~g~v~~L~~lL~~~~~~~~l~~~a~-~~L~nL~~~~~~~~~~~~~~---~~~l~------~~g~v~~Lv~lL~~~~~~~ 643 (1028)
+.+..++..+-..+.+..+.+.-. .+|..+...+.......+-. ...+. -...+...+..|++.++.+
T Consensus 738 --etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~v 815 (1172)
T KOG0213|consen 738 --ETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKV 815 (1172)
T ss_pred --HHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhH
Confidence 356666666654444444333322 23333333221111000000 00111 1123455667789999999
Q ss_pred HHHHHHHHHHhhcCCHHH--HHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHH
Q 001690 644 KIQFLHLLVKLCYKSEKV--RNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVA 721 (1028)
Q Consensus 644 ~~~a~~aL~~L~~~~~~~--~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv 721 (1028)
+.+++..+..++.--..+ -+++.. .| -.|.+.|....+++.-....+++.+.+...-..+... ..+.+|.|.
T Consensus 816 Rqqaadlis~la~Vlktc~ee~~m~~-lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP---i~dllPrlt 889 (1172)
T KOG0213|consen 816 RQQAADLISSLAKVLKTCGEEKLMGH-LG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP---IKDLLPRLT 889 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHH-hh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC---hhhhcccch
Confidence 999999988876432222 112322 22 3467788888898877777777776632211223333 246788888
Q ss_pred HhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCC
Q 001690 722 AIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDP 801 (1028)
Q Consensus 722 ~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~ 801 (1028)
-+|.+... .++..+...++.++...++. .
T Consensus 890 PILknrhe-KVqen~IdLvg~IadrgpE~----------------------------------v---------------- 918 (1172)
T KOG0213|consen 890 PILKNRHE-KVQENCIDLVGTIADRGPEY----------------------------------V---------------- 918 (1172)
T ss_pred HhhhhhHH-HHHHHHHHHHHHHHhcCccc----------------------------------C----------------
Confidence 88887653 56666666665554432221 0
Q ss_pred CChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCC
Q 001690 802 TKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSS 881 (1028)
Q Consensus 802 ~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 881 (1028)
...++.... --|+++|.+.+..+++.|...++.++.-... ..++..|...+...
T Consensus 919 ~aREWMRIc------feLlelLkahkK~iRRaa~nTfG~IakaIGP------------------qdVLatLlnnLkvq-- 972 (1172)
T KOG0213|consen 919 SAREWMRIC------FELLELLKAHKKEIRRAAVNTFGYIAKAIGP------------------QDVLATLLNNLKVQ-- 972 (1172)
T ss_pred CHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------------------HHHHHHHHhcchHH--
Confidence 111221111 1255666666666666666666666542111 01111111111000
Q ss_pred CCCCCCCC-----ccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchH
Q 001690 882 WGDHQSSC-----SVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVL 956 (1028)
Q Consensus 882 ~~~~~~~c-----~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~ 956 (1028)
..+...| .+-.-.|.+ -.+++.|+.=-+.++..|+...+.||+.++.- .-+.+.. +=.-..+
T Consensus 973 -eRq~RvcTtvaIaIVaE~c~p--------FtVLPalmneYrtPe~nVQnGVLkalsf~Fey--igemskd--Yiyav~P 1039 (1172)
T KOG0213|consen 973 -ERQNRVCTTVAIAIVAETCGP--------FTVLPALMNEYRTPEANVQNGVLKALSFMFEY--IGEMSKD--YIYAVTP 1039 (1172)
T ss_pred -HHHhchhhhhhhhhhhhhcCc--------hhhhHHHHhhccCchhHHHHhHHHHHHHHHHH--HHHHhhh--HHHHhhH
Confidence 0000111 111111221 12567777777788888888888888888731 1111111 1134566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHH
Q 001690 957 AILQVLEKGSLSAKTKALDLFQMIQ 981 (1028)
Q Consensus 957 ~l~~ll~~~~~~~~~~A~~~l~~~~ 981 (1028)
.|...+...|..-|+.|..++.++.
T Consensus 1040 lleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1040 LLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHh
Confidence 6677777888888888888888876
No 91
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.16 E-value=0.0022 Score=70.55 Aligned_cols=312 Identities=14% Similarity=0.083 Sum_probs=194.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcC-CChhHHHHHHHHHHHhcCCCCCCCC
Q 001690 628 NVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDS-DQPVVRRWAMRLIHCISEGNPNGVP 706 (1028)
Q Consensus 628 ~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~-~~~~v~~~A~~~L~~Ls~~~~~~~i 706 (1028)
.-..++.++...+.-+.....+++..++...........- .=-...|...+++ .+++-...|+++|..+.. .+ +.
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~-~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~--ey 190 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSEL-DVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VD--EY 190 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Cc--ch
Confidence 3567889999999998888888888887655211110000 0011234445555 455777778888887773 22 22
Q ss_pred CCCCCCCcccHHHHHHhcc-CCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchh
Q 001690 707 LPPSPGKETAINTVAAIFT-CSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDA 785 (1028)
Q Consensus 707 ~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~ 785 (1028)
...+ ..+.++..++..+. +......+-...-++.-|+. ++...+.+...+.++.|..++++. ...
T Consensus 191 R~~~-v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~------------~KE 256 (442)
T KOG2759|consen 191 RYAF-VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKES------------TKE 256 (442)
T ss_pred hhee-eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHH------------HHH
Confidence 2222 34577888998884 33344555667777777777 677778888999999999999962 135
Q ss_pred hHHHHHHHHHHHhcCCC-Ch----HHHHHHhhcCCHHHHHHHhhc--CCHHHHHHHHHHHHhhhhccccccccccccccc
Q 001690 786 SLLEIALAALLHFTDPT-KP----ELQRQVGKLEVYPSLIRVLST--GSSLAKQRAASALADLSQSTSVSVSNATLTAKQ 858 (1028)
Q Consensus 786 ~~~e~~~~aL~~l~~~~-~~----~~~~~i~~~~~i~~Lv~lL~s--~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~ 858 (1028)
.+..-+++++.|+.... +. +....++..++.+.+-.|.+- +++++...--.--..|-.+... |+..+
T Consensus 257 KV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~------LsSFD 330 (442)
T KOG2759|consen 257 KVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQD------LSSFD 330 (442)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh------hccHH
Confidence 67777888888888643 22 333345556655555444432 3555554433333333333333 22111
Q ss_pred ccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCC-cccchhhhhc--CcchhHHhhhc-CCCccHHHHHHHHHHH
Q 001690 859 TKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACS-PRETFCLVKA--DAVKPLVRNLN-DMESGVAEAALTALET 934 (1028)
Q Consensus 859 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~-~~~~~~l~~~--gai~~Lv~lL~-~~d~~v~~~A~~aL~~ 934 (1028)
- . ..-+.++. -...|+|....- .+|..++.+. ..++.|+.+|+ +.|+.+...|+.=++.
T Consensus 331 e------Y--~sEl~sG~---------L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge 393 (442)
T KOG2759|consen 331 E------Y--KSELRSGR---------LEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGE 393 (442)
T ss_pred H------H--HHHHHhCC---------cCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHH
Confidence 0 0 00011111 112344443221 1222334332 46789999999 5668888889988988
Q ss_pred hhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhh
Q 001690 935 LLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKH 983 (1028)
Q Consensus 935 L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~ 983 (1028)
+.+- ..+|..++.+.||-..+.+++.|+|++++-.|+-+++++..+
T Consensus 394 ~Vr~---yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 394 YVRH---YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHh---CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 8843 346788999999999999999999999999999999998743
No 92
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00037 Score=73.26 Aligned_cols=290 Identities=16% Similarity=0.228 Sum_probs=191.2
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHH-hchhHHHHHhhccCCchhHHHHHHHHhhhchhhhhhhhccc
Q 001690 374 PKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVE-AGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTK 451 (1028)
Q Consensus 374 p~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-~g~i~~lv~~L~~~e~~~~A~~~L~~Ls~~~~~~~~i~~~~ 451 (1028)
-.++.+|.+ ++.+|..|+..+..++... .+..... ...++.+.+++...+-.+.|+.+|.|++..+..+..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~ll~~- 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKLLQD- 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHHHHH-
Confidence 357899999 9999999999999998762 2333222 4557778888877744788999999999999999999873
Q ss_pred chHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHc------CCchhHHHhh-c-CCCHHHH-HHHHHHHHHhhc
Q 001690 452 DCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEA------GYFQPFVACF-N-RGSQETR-ALMASALRNMRL 522 (1028)
Q Consensus 452 g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~------G~v~~Lv~lL-~-~~~~~~~-~~a~~~L~~La~ 522 (1028)
.+..++.++.++....-..++..|.||+..++....+... .++..++..+ . +.+.... ..-+.++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 8888888888776777788899999999988765544321 2344444443 2 2221111 234567889999
Q ss_pred CcchHHHHhhCCcHHHH-HHHhcCCCHHH-HHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHH
Q 001690 523 DESSIKTLKDRQFIHNV-IQMLSSNSPVC-KSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAE 600 (1028)
Q Consensus 523 ~~~~~~~i~~~g~i~~L-v~lL~s~~~~~-~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~ 600 (1028)
.+.+|..+.+...+|.= +.-+.+.+..+ |...+++|.|.|-+...+..++.. .+..|-.+|..-.....+-+.=.
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e--~~~lLp~iLlPlagpee~sEEdm- 238 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDE--SINLLPAILLPLAGPEELSEEDM- 238 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcc--hHHHHHHHHhhcCCccccCHHHH-
Confidence 99999998876643221 11123434444 567899999999998888888774 33333333331110000000000
Q ss_pred HHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc-----CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHH
Q 001690 601 ILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA-----NTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQL 675 (1028)
Q Consensus 601 ~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~-----~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~L 675 (1028)
..+|.=++++. .++|+++...+.+|+-||.... -|..++. .++.++
T Consensus 239 --------------------------~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~--kgvYpi 289 (353)
T KOG2973|consen 239 --------------------------AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRS--KGVYPI 289 (353)
T ss_pred --------------------------hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHh--cCchHH
Confidence 01111123332 5789999999999999997654 4777887 566666
Q ss_pred HhhhcC--CChhHHHHHHHHHHHhcC
Q 001690 676 FSSLDS--DQPVVRRWAMRLIHCISE 699 (1028)
Q Consensus 676 v~Ll~~--~~~~v~~~A~~~L~~Ls~ 699 (1028)
++.+.. +++++++.+-.+...|-+
T Consensus 290 lRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 290 LRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 665543 456888877777777764
No 93
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.13 E-value=0.00023 Score=77.94 Aligned_cols=272 Identities=14% Similarity=0.206 Sum_probs=187.7
Q ss_pred HHHHHHHhchhHHHHHhhccC----CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhh-cCChhhHHHHHHHHhc
Q 001690 404 HKEAIVEAGAVRRIVKQICKG----ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLH-NNNPNLSQKAHDVLQN 478 (1028)
Q Consensus 404 ~k~~i~~~g~i~~lv~~L~~~----e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~-~~~~~~~~~a~~~L~n 478 (1028)
.+..|...|++..+++++... .++..|+..|..+.. .++++.+... | +..++.+-+ ...++.+...+..|.|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 456777789999999999987 457888888877633 3556666653 3 444444444 3567888888999999
Q ss_pred cccC-chhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc--CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHH
Q 001690 479 LSHN-THFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRL--DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACL 555 (1028)
Q Consensus 479 L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~ 555 (1028)
+-.+ ++.+..++++|+++.++-..+..+|.+...++-+|+|++. ..+.+..|++..+-.-|.-+-.+.+.-.+-+|+
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9766 4689999999999999988888889999999999999854 567888888888777787777788888899999
Q ss_pred HHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHH
Q 001690 556 KCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQL 635 (1028)
Q Consensus 556 ~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~l 635 (1028)
-+..-|+.+.+.-..+-+. |.+...-.++.+.++ ...-+.+.. -+.+ ....-++.|+-+
T Consensus 329 lAV~vlat~KE~E~~VrkS-~TlaLVEPlva~~DP-~~FARD~hd----~aQG---------------~~~d~LqRLvPl 387 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKS-GTLALVEPLVASLDP-GRFARDAHD----YAQG---------------RGPDDLQRLVPL 387 (832)
T ss_pred HHHhhhhhhhhhhHHHhhc-cchhhhhhhhhccCc-chhhhhhhh----hhcc---------------CChHHHHHhhhh
Confidence 9999999887665555555 765444444444332 121111111 0110 112357788888
Q ss_pred hcCCCHHHHHHHHHHHHHhhc---CC-HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCC
Q 001690 636 IANTERETKIQFLHLLVKLCY---KS-EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNP 702 (1028)
Q Consensus 636 L~~~~~~~~~~a~~aL~~L~~---~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~ 702 (1028)
|.+.--+.+. +.+++-.+. .+ ..--+.+.+ -|+++.|-++..+++.....-|..+|..+-+..+
T Consensus 388 LdS~R~EAq~--i~AF~l~~EAaIKs~Q~K~kVFse-IGAIQaLKevaSS~d~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 388 LDSNRLEAQC--IGAFYLCAEAAIKSLQGKTKVFSE-IGAIQALKEVASSPDEVAAKFASEALTVIGEEVP 455 (832)
T ss_pred hhcchhhhhh--hHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence 8865544444 333332211 11 222345556 8999999999998888777788888888875433
No 94
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.0011 Score=78.99 Aligned_cols=334 Identities=13% Similarity=0.188 Sum_probs=209.7
Q ss_pred hHHHHHHHHhccccCchhHHHHH-----HcCCchhHHHhh-cCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHH
Q 001690 468 LSQKAHDVLQNLSHNTHFAVKMA-----EAGYFQPFVACF-NRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQ 541 (1028)
Q Consensus 468 ~~~~a~~~L~nL~~~~~n~~~i~-----~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ 541 (1028)
-..-++++|.|+.........+. =-|.++.++.+| ..+.+.++..|+.++..+..+.++...++..|++..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45578899999876554332222 127788888887 466788999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCccc------
Q 001690 542 MLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFE------ 615 (1028)
Q Consensus 542 lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~------ 615 (1028)
+|.| -|..|+.++.+|+.|+++++......+. |++..+..++-..+. ...+..++..|+.+...+..-...
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~h-g~l~yil~~~c~~~~-~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEH-GGLMYILSILCLTNS-DQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhc-CchhhhhHHHhccCc-HHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 9874 4778999999999999999999888888 999999988876554 566788899999998754211110
Q ss_pred -ccccchhhcccccHHHHHHHhcCC--CHH------HHHHHHHHHHHhhcCC----------------------------
Q 001690 616 -LHHGLQELQSEHNVNVFLQLIANT--ERE------TKIQFLHLLVKLCYKS---------------------------- 658 (1028)
Q Consensus 616 -~~~~~~~l~~~g~v~~Lv~lL~~~--~~~------~~~~a~~aL~~L~~~~---------------------------- 658 (1028)
......-...+|- ...+++++.+ +|+ .+......+..+...-
T Consensus 1898 FLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred hchHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence 0000001112222 4556666533 232 3333333333333110
Q ss_pred ----HHHHHHHHhh-----------hchHHHHHhhhcCCChh---HHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHH
Q 001690 659 ----EKVRNLIESN-----------NDAITQLFSSLDSDQPV---VRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTV 720 (1028)
Q Consensus 659 ----~~~~~~i~~~-----------~g~v~~Lv~Ll~~~~~~---v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~L 720 (1028)
...|..+.+. .+.++.+..++...+++ .-.-.....+.++ .++ .+++++ ..-|.+|.+
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r-~hP--~LADqi-p~LGylPK~ 2052 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVR-HHP--NLADQL-PSLGYLPKF 2052 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHH-hCc--chhhhC-CCccchHHH
Confidence 0011111100 24455566666655542 1122222333333 333 344443 234788988
Q ss_pred HHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcC
Q 001690 721 AAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTD 800 (1028)
Q Consensus 721 v~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~ 800 (1028)
+.-+...++ ..-..|..+|-.|+. |.-..+++.....+..++..+... ...+--++-++-++..
T Consensus 2053 ~~Am~~~n~-s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~--------------~~~~GLA~EalkR~~~ 2116 (2235)
T KOG1789|consen 2053 CTAMCLQNT-SAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ--------------PSLMGLAAEALKRLMK 2116 (2235)
T ss_pred HHHHHhcCC-cCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc--------------chHHHHHHHHHHHHHH
Confidence 887666554 333568888888877 666678888888888888888741 3333344555555543
Q ss_pred CCChHHHHHHhhcCCHHHHHHHhhc
Q 001690 801 PTKPELQRQVGKLEVYPSLIRVLST 825 (1028)
Q Consensus 801 ~~~~~~~~~i~~~~~i~~Lv~lL~s 825 (1028)
-...+.-.+..+.|.+|.|.+||..
T Consensus 2117 r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2117 RNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HhHHHHHHHHhccCcHHHHHHHhcc
Confidence 2233444456789999999999974
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.09 E-value=0.0004 Score=79.41 Aligned_cols=241 Identities=16% Similarity=0.099 Sum_probs=164.2
Q ss_pred hchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHH
Q 001690 411 AGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAV 487 (1028)
Q Consensus 411 ~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~ 487 (1028)
..+++.++..|... +....++..|..... ..++..|+..|.+.++.++..++.+|..+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------
Confidence 34577778888543 333333333322211 234889999999888889999999998652
Q ss_pred HHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHh
Q 001690 488 KMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKM 567 (1028)
Q Consensus 488 ~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~ 567 (1028)
..+..+.|+.+|++.++.++..++.+++. ......+.|+.+|++.++.++..|+++|+.|...
T Consensus 115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ---chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 23567889999999999998888777665 1223467899999999999999999999987544
Q ss_pred HHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHH
Q 001690 568 VKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQF 647 (1028)
Q Consensus 568 ~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a 647 (1028)
.+++.|...+.+.+ +.++..|.+.+..+-. ..++..+..+....++.....+
T Consensus 178 --------~a~~~L~~al~d~~--~~VR~aA~~al~~lG~------------------~~A~~~l~~~~~~~g~~~~~~l 229 (410)
T TIGR02270 178 --------LSESTLRLYLRDSD--PEVRFAALEAGLLAGS------------------RLAWGVCRRFQVLEGGPHRQRL 229 (410)
T ss_pred --------cchHHHHHHHcCCC--HHHHHHHHHHHHHcCC------------------HhHHHHHHHHHhccCccHHHHH
Confidence 57777887776543 6788888887755522 2355666665554444444333
Q ss_pred HHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCC
Q 001690 648 LHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCS 727 (1028)
Q Consensus 648 ~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~ 727 (1028)
..++... .. ..+++.|..+++.+. ++..++.+|..+-. ...++.|+..+.+.
T Consensus 230 ~~~lal~-----------~~-~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------------p~av~~L~~~l~d~ 281 (410)
T TIGR02270 230 LVLLAVA-----------GG-PDAQAWLRELLQAAA--TRREALRAVGLVGD--------------VEAAPWCLEAMREP 281 (410)
T ss_pred HHHHHhC-----------Cc-hhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------------cchHHHHHHHhcCc
Confidence 3333222 11 357778888888765 89999999997772 35799999988765
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 001690 728 PDVEERSLAAGIISQLPK 745 (1028)
Q Consensus 728 ~~~~~~~~a~~~L~nL~~ 745 (1028)
. .+..|..++..++.
T Consensus 282 ~---~aR~A~eA~~~ItG 296 (410)
T TIGR02270 282 P---WARLAGEAFSLITG 296 (410)
T ss_pred H---HHHHHHHHHHHhhC
Confidence 3 55666667776665
No 96
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.08 E-value=0.0024 Score=74.03 Aligned_cols=261 Identities=13% Similarity=0.159 Sum_probs=155.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhH--HHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCc
Q 001690 536 IHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMV--KHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQ 613 (1028)
Q Consensus 536 i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~--~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~ 613 (1028)
+...+..|++.++.+|.+|+..+..|+.--..+ .+++...|+| |.+.|.... +.+.-....+|..+++.-.-.+
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeey--pEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEY--PEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCccc--HHHHHHHHHHHHHHHHhccccc
Confidence 445566788999999999999999886532222 2233332543 555554332 3333333344444443210000
Q ss_pred ccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHH---HHHHHHhhhchHHHHHhhhcCCChhHHHHH
Q 001690 614 FELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEK---VRNLIESNNDAITQLFSSLDSDQPVVRRWA 690 (1028)
Q Consensus 614 ~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~---~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A 690 (1028)
- .---.+.+|.|.-+|++....++++++..+..+|...++ .|+-|+- ---|+.+|++.+.++|++|
T Consensus 877 m-------~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI----cfeLlelLkahkK~iRRaa 945 (1172)
T KOG0213|consen 877 M-------TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI----CFELLELLKAHKKEIRRAA 945 (1172)
T ss_pred c-------CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 0 001246889999999999999999999999999987733 3444443 2347888899999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHH---HHHHHHHhcCCCCChHHHHHHHhccchHHHHHHH
Q 001690 691 MRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEER---SLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVI 767 (1028)
Q Consensus 691 ~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~---~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL 767 (1028)
...+.+++.. +- -...+..|++-|...+. ..+ ..|.++++. -.|-+..|-.++
T Consensus 946 ~nTfG~Iaka-----IG-----PqdVLatLlnnLkvqeR-q~RvcTtvaIaIVaE-------------~c~pFtVLPalm 1001 (1172)
T KOG0213|consen 946 VNTFGYIAKA-----IG-----PQDVLATLLNNLKVQER-QNRVCTTVAIAIVAE-------------TCGPFTVLPALM 1001 (1172)
T ss_pred HhhhhHHHHh-----cC-----HHHHHHHHHhcchHHHH-Hhchhhhhhhhhhhh-------------hcCchhhhHHHH
Confidence 9999999932 11 11233334333332221 111 112222222 123344444555
Q ss_pred HhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccc
Q 001690 768 CSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSV 847 (1028)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~ 847 (1028)
.+.. .....++.++..+++.+..-......+.| +-+.|.|-+-|...++.-++-|+.++.+++.+...
T Consensus 1002 neYr----------tPe~nVQnGVLkalsf~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g 1069 (1172)
T KOG0213|consen 1002 NEYR----------TPEANVQNGVLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG 1069 (1172)
T ss_pred hhcc----------CchhHHHHhHHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC
Confidence 5421 12467788888888877632111221222 35678888888888999999999999999876433
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.04 E-value=0.0023 Score=72.49 Aligned_cols=329 Identities=12% Similarity=0.121 Sum_probs=209.0
Q ss_pred HHHHHhc-CChhhhHHHHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC----C
Q 001690 352 EEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG----E 425 (1028)
Q Consensus 352 ~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~----e 425 (1028)
..|..+. ..+.-|....-....+.+..++-+ +..+|..+..+++.+..+. +.-..+.+.+.---++..|... .
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChH
Confidence 3455544 556555555555566666654544 8899999999999999988 5666666655545566666655 6
Q ss_pred chhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCC
Q 001690 426 TMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRG 505 (1028)
Q Consensus 426 ~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~ 505 (1028)
+|++|....+.+-..+.....+. .|.+..+|.+..+.++..+..|.++|..++..+. ..++++||+.+|++.+.++
T Consensus 84 ER~QALkliR~~l~~~~~~~~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhc
Confidence 78899999998877655444554 4899999999999999999999999999987543 4567899999999999888
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCC-------CH--HHHHHHHHHHHHHhcCCHhHHHHHhC-C
Q 001690 506 SQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSN-------SP--VCKSACLKCIKTLIAHSKMVKHLLLD-P 575 (1028)
Q Consensus 506 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~-------~~--~~~~~A~~aL~nL~~~~~~~~~lv~~-~ 575 (1028)
..++....+.++..+-.+|..|..+...--+..++.-+.+. +. +.-..+..++..+-.+=.+.-.+... .
T Consensus 160 ~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~ 239 (371)
T PF14664_consen 160 SFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF 239 (371)
T ss_pred cHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc
Confidence 77777888888888888998888776533355554443322 22 23345555555543332222222222 1
Q ss_pred CcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHh----------c---CCCHH
Q 001690 576 ATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLI----------A---NTERE 642 (1028)
Q Consensus 576 g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL----------~---~~~~~ 642 (1028)
.++..|+..|..+. ..+++....+|..+-+-+...-.........+..-|-...--.+- . ...++
T Consensus 240 ~~lksLv~~L~~p~--~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~ 317 (371)
T PF14664_consen 240 RGLKSLVDSLRLPN--PEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPN 317 (371)
T ss_pred hHHHHHHHHHcCCC--HHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccccc
Confidence 47888999998654 467888888888887743211000000011111122110001111 0 01122
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCC-ChhHHHHHHHHHHHhc
Q 001690 643 TKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSD-QPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 643 ~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~-~~~v~~~A~~~L~~Ls 698 (1028)
...+-...+ ...+.+ +|.++.|+++.... ++.+...|.-+|..+-
T Consensus 318 l~~~y~aLl----------l~ili~-~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 318 LVNHYLALL----------LAILIE-AGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHHH----------HHHHHH-cChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 222222222 223445 79999999999887 7788999998888664
No 98
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0039 Score=73.47 Aligned_cols=406 Identities=16% Similarity=0.183 Sum_probs=225.1
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhcCChhhhHHHHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Q 001690 334 NAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAG 412 (1028)
Q Consensus 334 ~~~~~L~s~~~~~~~~al~~L~~l~~~~~~r~~i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g 412 (1028)
.+...|.+++.-++.-|+..++.+|...-.|+ ..|.+.++|++ ++.+|++|+.+...+-...++.-+.+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f---- 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF---- 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh----
Confidence 45567888888888888888888874333333 45677889999 99999999998888776664444443
Q ss_pred hhHHHHHhhccC--CchhHHHHHHHHhhhc-hhhhhhhhcccchHHHHHHHhhc----C-----------ChhhHHHHHH
Q 001690 413 AVRRIVKQICKG--ETMPEAIEVLSELTKR-ETLGEKIGNTKDCITIMVSLLHN----N-----------NPNLSQKAHD 474 (1028)
Q Consensus 413 ~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~I~~Lv~lL~~----~-----------~~~~~~~a~~ 474 (1028)
++.....|.+. .+.-..+..+.++++. ++.-... ...++.||..|++ + +|-.|...+
T Consensus 181 -~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f---r~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL- 255 (866)
T KOG1062|consen 181 -VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF---RDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL- 255 (866)
T ss_pred -hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH-
Confidence 33444555544 4555566666777653 2222222 2356666666652 1 111222111
Q ss_pred HHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHH
Q 001690 475 VLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSA 553 (1028)
Q Consensus 475 ~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~ 553 (1028)
.++++|..++++....+-.+|+.++.+.+...-++++=.-..+--++. .++...+..
T Consensus 256 ----------------------rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvl 313 (866)
T KOG1062|consen 256 ----------------------RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVL 313 (866)
T ss_pred ----------------------HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHH
Confidence 244556677788888888888888665444333333211222222222 355667888
Q ss_pred HHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHH
Q 001690 554 CLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFL 633 (1028)
Q Consensus 554 A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv 633 (1028)
|+.+|+..-.+.++.-+ . =++..|...++... ..++++= ..++
T Consensus 314 ainiLgkFL~n~d~Nir---Y-vaLn~L~r~V~~d~--~avqrHr-------------------------------~tIl 356 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIR---Y-VALNMLLRVVQQDP--TAVQRHR-------------------------------STIL 356 (866)
T ss_pred HHHHHHHHhcCCcccee---e-eehhhHHhhhcCCc--HHHHHHH-------------------------------HHHH
Confidence 88888776555432221 1 34555666665432 1111211 1356
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCC-CCCCCCCCCCC
Q 001690 634 QLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGN-PNGVPLPPSPG 712 (1028)
Q Consensus 634 ~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~-~~~~i~~~~~~ 712 (1028)
+.|+.+++.+|..|+..++.|... .+++.++.+ |+.+|.+.+++.+...+.-+..+++.. +++.
T Consensus 357 eCL~DpD~SIkrralELs~~lvn~-~Nv~~mv~e-------Ll~fL~~~d~~~k~~~as~I~~laEkfaP~k~------- 421 (866)
T KOG1062|consen 357 ECLKDPDVSIKRRALELSYALVNE-SNVRVMVKE-------LLEFLESSDEDFKADIASKIAELAEKFAPDKR------- 421 (866)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcc-ccHHHHHHH-------HHHHHHhccHHHHHHHHHHHHHHHHhcCCcch-------
Confidence 677788899999999999988744 466666665 888888888888888887777777322 2211
Q ss_pred CcccHHHHHHhccCCCC---HHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHH
Q 001690 713 KETAINTVAAIFTCSPD---VEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLE 789 (1028)
Q Consensus 713 ~~~~i~~Lv~lL~~~~~---~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e 789 (1028)
=.|..+.+.|....+ +++..+-..+|+|-.....+. .+..+..-+... + ........++.
T Consensus 422 --W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y--------~~~rLy~a~~~~-----~--~~~is~e~l~q 484 (866)
T KOG1062|consen 422 --WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY--------AVLRLYLALSED-----T--LLDISQEPLLQ 484 (866)
T ss_pred --hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH--------HHHHHHHHHhhh-----h--hhhhhhhhHHH
Confidence 134555555555432 233344444444431111110 011111111100 0 00000123344
Q ss_pred HHHHHHHHhc----CCCChHHHHHHhhcCCHHHHHHHhhc--CCHHHHHHHHHHHHhhhhcc
Q 001690 790 IALAALLHFT----DPTKPELQRQVGKLEVYPSLIRVLST--GSSLAKQRAASALADLSQST 845 (1028)
Q Consensus 790 ~~~~aL~~l~----~~~~~~~~~~i~~~~~i~~Lv~lL~s--~~~~vk~~Aa~aL~~ls~~~ 845 (1028)
-++|++..+. .+.+.+--..+.+..++..+-.++.+ .+..+|..|-.||..|+..-
T Consensus 485 Va~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 485 VASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred HHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 4445544433 11111111124556667777777774 35779999999999887643
No 99
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.00 E-value=7.3e-05 Score=68.71 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=109.9
Q ss_pred cchHHHHHHHhhc-CChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHH
Q 001690 451 KDCITIMVSLLHN-NNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKT 529 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~-~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 529 (1028)
-+.+..||.-.+. .+.+.++....-|.|.+.++-|-..+.+..+++.++..|.+.+..+.+-..+.|+|++-++.+.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3677888877764 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HhHHHHHh
Q 001690 530 LKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHS-KMVKHLLL 573 (1028)
Q Consensus 530 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~-~~~~~lv~ 573 (1028)
|.+.+++|..+..+.++.......|+.+|..|+-.. ..+..+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 999999999999999999999999999999998775 34444443
No 100
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.97 E-value=1.1e-05 Score=60.12 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=38.4
Q ss_pred CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 001690 523 DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIA 563 (1028)
Q Consensus 523 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~ 563 (1028)
+++++..+++.|++|+|+++|+++++.+++.|+++|+|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999974
No 101
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0021 Score=75.23 Aligned_cols=419 Identities=11% Similarity=0.133 Sum_probs=233.0
Q ss_pred HHHHhhccC--CchhHHHHHHHHh-hhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHc
Q 001690 416 RIVKQICKG--ETMPEAIEVLSEL-TKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEA 492 (1028)
Q Consensus 416 ~lv~~L~~~--e~~~~A~~~L~~L-s~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~ 492 (1028)
.+..+|.+. ..+..|..-+..+ ++..+ ....+|..|+-.-+.+.++++...-.|..-+..+.+-..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 455555554 3444454444443 33322 1456788888888888888887777776666555543322
Q ss_pred CCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HhHHHH
Q 001690 493 GYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHS-KMVKHL 571 (1028)
Q Consensus 493 G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~-~~~~~l 571 (1028)
-|..+-+-|+++|+.++..|+.+|..+-.. ++..=++-.+-+...+.++-+|..|+-|+-.|-+-+ +.+.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 245566778999999999888888765221 111111122233456788999999999999985544 444433
Q ss_pred HhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHH
Q 001690 572 LLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLL 651 (1028)
Q Consensus 572 v~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL 651 (1028)
++ .+-.||...+ +.+.-.|+.++-.+|-... . .+ .+-...|..+|..-+.--|.-++..|
T Consensus 182 ~e------~I~~LLaD~s--plVvgsAv~AF~evCPerl---d-------LI--HknyrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 182 EE------VIKKLLADRS--PLVVGSAVMAFEEVCPERL---D-------LI--HKNYRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HH------HHHHHhcCCC--CcchhHHHHHHHHhchhHH---H-------Hh--hHHHHHHHhhccchhhhhHHHHHHHH
Confidence 32 2334554433 3445666666666665221 1 11 12334555565555555555555555
Q ss_pred HHhhcCC----------------------------------HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHh
Q 001690 652 VKLCYKS----------------------------------EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCI 697 (1028)
Q Consensus 652 ~~L~~~~----------------------------------~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~L 697 (1028)
..-|... ++.+-.+ +..-.|+.+.++.+..+++.+++.+
T Consensus 242 ~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL-------~stkpLl~S~n~sVVmA~aql~y~l 314 (968)
T KOG1060|consen 242 TRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLL-------QSTKPLLQSRNPSVVMAVAQLFYHL 314 (968)
T ss_pred HHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHH-------HhccHHHhcCCcHHHHHHHhHHHhh
Confidence 5444321 1122111 2233467788889999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCC
Q 001690 698 SEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGI 777 (1028)
Q Consensus 698 s~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~ 777 (1028)
+. .. + ..+.+++||++|.++. +.+.-.+..|+-++.. ..+.+.+.++-..- + ..
T Consensus 315 AP-~~--~-------~~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~---------~~~lF~P~lKsFfv---~--ss 368 (968)
T KOG1060|consen 315 AP-KN--Q-------VTKIAKALVRLLRSNR--EVQYVVLQNIATISIK---------RPTLFEPHLKSFFV---R--SS 368 (968)
T ss_pred CC-HH--H-------HHHHHHHHHHHHhcCC--cchhhhHHHHHHHHhc---------chhhhhhhhhceEe---e--cC
Confidence 92 11 1 1356889999988876 3444444444433332 22333333322210 0 00
Q ss_pred CCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccc
Q 001690 778 RTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAK 857 (1028)
Q Consensus 778 ~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~ 857 (1028)
....+.-.-.-+|.+++...|... +++-|-...++.+..+-..|..||+.++..... .
T Consensus 369 -----Dp~~vk~lKleiLs~La~esni~~--------ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s------v--- 426 (968)
T KOG1060|consen 369 -----DPTQVKILKLEILSNLANESNISE--------ILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS------V--- 426 (968)
T ss_pred -----CHHHHHHHHHHHHHHHhhhccHHH--------HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc------h---
Confidence 012333334455666653333221 244555566666666666666777776654222 0
Q ss_pred cccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhh
Q 001690 858 QTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLA 937 (1028)
Q Consensus 858 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~ 937 (1028)
...++..||.+|++.|..|+..|+..+-+|+.
T Consensus 427 ------------------------------------------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 427 ------------------------------------------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred ------------------------------------------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 11246789999999999999999999999986
Q ss_pred cccchhhHHHHHHhccchHHHHHHHh-cCChhHHHHHHHHHHHHHh
Q 001690 938 DHSTLSHAIAVIVDSQGVLAILQVLE-KGSLSAKTKALDLFQMIQK 982 (1028)
Q Consensus 938 d~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~~~~~A~~~l~~~~~ 982 (1028)
.+.. .+.+ -+..|.+++. -.-+..|.--+|++..++.
T Consensus 459 ~~p~--~h~~------ii~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 459 KDPA--EHLE------ILFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred hChH--HHHH------HHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 5321 1111 2334445554 2234455555666665553
No 102
>PF05536 Neurochondrin: Neurochondrin
Probab=97.91 E-value=0.0079 Score=71.79 Aligned_cols=229 Identities=11% Similarity=0.123 Sum_probs=154.8
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhc-CChh---hhHHHHhhccHHHHHHHHhc-C-------HHHHHHHHHHHHHHh
Q 001690 331 RFQNAIIKINSDDQSRRKSALEEMKNIM-ELPQ---YAEKAAKAGLIPKLVEFLKD-T-------RLSTEAILKCLYFLA 398 (1028)
Q Consensus 331 ~i~~~~~~L~s~~~~~~~~al~~L~~l~-~~~~---~r~~i~~~g~ip~Lv~lL~s-~-------~~~~~~A~~~L~~Ls 398 (1028)
.+......|+..+++.+.-++--+..++ .++. .++.+.++=+.+.+-+||++ . ...+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3455667788888677777888888888 5443 34457777667888999987 2 345677889999999
Q ss_pred cccHHHHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHH
Q 001690 399 KYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDV 475 (1028)
Q Consensus 399 ~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~ 475 (1028)
.++ +....=.-.+.||.+++.+.+. +....|..+|..++.+++.+..+.+ .|+|+.|+..+.+ .+...+.|..+
T Consensus 86 ~~~-~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDP-ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CCh-hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHHHH
Confidence 866 4332211267899999999877 6788999999999999999999999 7999999999987 66778899999
Q ss_pred HhccccCchhH-----HHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh-cCcch-HHHHhhCC----cHHHHHHHhc
Q 001690 476 LQNLSHNTHFA-----VKMAEAGYFQPFVACFNRGSQETRALMASALRNMR-LDESS-IKTLKDRQ----FIHNVIQMLS 544 (1028)
Q Consensus 476 L~nL~~~~~n~-----~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~-~~~i~~~g----~i~~Lv~lL~ 544 (1028)
|.++....... .... ..+++.+-..+.......+...+..|..+- ..+.. ....-... ....+-.+|+
T Consensus 163 L~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 99987654311 1111 123455555555555566777888888872 22210 11111222 3334455666
Q ss_pred C-CCHHHHHHHHHHHHHHhc
Q 001690 545 S-NSPVCKSACLKCIKTLIA 563 (1028)
Q Consensus 545 s-~~~~~~~~A~~aL~nL~~ 563 (1028)
+ ..+..|..|+.....|..
T Consensus 242 sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 5 456667666666666543
No 103
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.87 E-value=2.2e-05 Score=58.46 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=37.4
Q ss_pred ChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001690 803 KPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQ 843 (1028)
Q Consensus 803 ~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~ 843 (1028)
+++.++.+.+.|++|.|+++|+++++.+++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35677889999999999999999999999999999999973
No 104
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.86 E-value=6.8e-06 Score=86.77 Aligned_cols=65 Identities=23% Similarity=0.521 Sum_probs=53.7
Q ss_pred CCcccCcCccccccCceEc-cCcccchHHHHHHHHhcCCCCCCCcccccccc----CCcCccchhhhHHHH
Q 001690 258 IESLVCPLCNELMEDPVAI-VCGHSFERKAIQEHFQRGGKNCPTCRQELLSL----DLMPNLSLRSSIEEW 323 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~-~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~i~~~ 323 (1028)
-....|++|..+|.|+-++ .|=||||++||-+++.. ..+||.|...+... ++.++..|+.++.++
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 3689999999999999875 79999999999999986 88999998877554 466666677666654
No 105
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00071 Score=71.23 Aligned_cols=257 Identities=13% Similarity=0.153 Sum_probs=161.4
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhC
Q 001690 454 ITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDR 533 (1028)
Q Consensus 454 I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~ 533 (1028)
.-.+|.++.+.+|.+++.|+..+.+++........--+.-.++.+.+++....+ ...|+.+|.|++..+.-+..+.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 457899999999999999999999998772222222234567889999977665 567889999999999988888877
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhC------CCcHHHHHHHHhccCC-ChhHHHHHHHHHHHHH
Q 001690 534 QFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLD------PATIPLLLGLIQFVRS-DPHLKHEAAEILALMV 606 (1028)
Q Consensus 534 g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~------~g~v~~L~~lL~~~~~-~~~l~~~a~~~L~nL~ 606 (1028)
.+..++.++.++....-...+..|.||+..+.....+... .|.+.....+...+-. ... -...+.+++||+
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~-f~ylA~vf~nls 160 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE-FHYLAPVFANLS 160 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc-hhHHHHHHHHHh
Confidence 8888888888876666778889999999987654443321 1334433344333221 122 256677899999
Q ss_pred cCCCCCcccccccchhhcccccH--HHHHHHhcCCCHHHH-HHHHHHHHHhhcCCHHHHHHHHhhhchHHHHH-------
Q 001690 607 GGCQHPQFELHHGLQELQSEHNV--NVFLQLIANTERETK-IQFLHLLVKLCYKSEKVRNLIESNNDAITQLF------- 676 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~~g~v--~~Lv~lL~~~~~~~~-~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv------- 676 (1028)
.....+. .+.....+ +.++. +.+.+..++ ...+++|.|.|.........+.+....++.|+
T Consensus 161 ~~~~gR~--------l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpe 231 (353)
T KOG2973|consen 161 QFEAGRK--------LLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPE 231 (353)
T ss_pred hhhhhhh--------HhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCcc
Confidence 8654332 33333311 22222 223334444 37888888988877554444433123333332
Q ss_pred --------------hhhc-----CCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 677 --------------SSLD-----SDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 677 --------------~Ll~-----~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
+++- .+++.++..-..+|..|+..+.+++..+. .++.++++-+....
T Consensus 232 e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~-----kgvYpilRElhk~e 297 (353)
T KOG2973|consen 232 ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS-----KGVYPILRELHKWE 297 (353)
T ss_pred ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh-----cCchHHHHHHhcCC
Confidence 2221 13457777777788777755555554332 44566666665544
No 106
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.82 E-value=1.3e-05 Score=67.90 Aligned_cols=40 Identities=38% Similarity=0.902 Sum_probs=31.8
Q ss_pred cCcCccccccCc------------e-EccCcccchHHHHHHHHhcCCCCCCCcc
Q 001690 262 VCPLCNELMEDP------------V-AIVCGHSFERKAIQEHFQRGGKNCPTCR 302 (1028)
Q Consensus 262 ~Cpic~~~~~dP------------v-~~~cght~c~~ci~~~~~~~~~~CP~~~ 302 (1028)
.|+||++.|.+| + ..+|||.|...||.+|++ .+.+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 399999988433 3 348999999999999997 455999996
No 107
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.80 E-value=0.00017 Score=66.42 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=105.7
Q ss_pred chhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHH
Q 001690 412 GAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVK 488 (1028)
Q Consensus 412 g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~ 488 (1028)
+-+..+|.-.... +.++...+-|.|.+.+|.+...+.+ ..++...|.-|...++..++.+...|.|+|.++.|+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3345556555554 8889999999999999999999988 69999999999999999999999999999999999999
Q ss_pred HHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCc-chHHHHhhCCcHHHHHHHh
Q 001690 489 MAEAGYFQPFVACFNRGSQETRALMASALRNMRLDE-SSIKTLKDRQFIHNVIQML 543 (1028)
Q Consensus 489 i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~i~~Lv~lL 543 (1028)
|.+++++|..+..++++...+...++.+|..|+... ..+..+.. |++++.+
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 999999999999999999998888989998886543 34445543 4455544
No 108
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.80 E-value=0.00037 Score=76.36 Aligned_cols=275 Identities=17% Similarity=0.095 Sum_probs=175.0
Q ss_pred HHHHhhhchHHHHHhhhcCCCh--hHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHH
Q 001690 663 NLIESNNDAITQLFSSLDSDQP--VVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGII 740 (1028)
Q Consensus 663 ~~i~~~~g~v~~Lv~Ll~~~~~--~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L 740 (1028)
..|+. .|++..|++++.+++. .+|..|.++|-.+....+.+.+.. .+++.++.+-......+.....+++|
T Consensus 174 D~iR~-~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~------~~~~~Il~lAK~~e~~e~aR~~~~il 246 (832)
T KOG3678|consen 174 DAIRL-DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVAR------IGLGVILNLAKEREPVELARSVAGIL 246 (832)
T ss_pred hHhhc-cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhh------ccchhhhhhhhhcCcHHHHHHHHHHH
Confidence 45666 7999999999999986 569999999988763222222222 12455555444444557778899999
Q ss_pred hcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHH
Q 001690 741 SQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLI 820 (1028)
Q Consensus 741 ~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv 820 (1028)
.++-+++.+..+.++++|++..++-..+. .++.++..++.+|.|++--.....++.+++-.+-.-|.
T Consensus 247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rR-------------t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF 313 (832)
T KOG3678|consen 247 EHMFKHSEETCQRLVAAGGLDAVLYWCRR-------------TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF 313 (832)
T ss_pred HHHhhhhHHHHHHHHhhcccchheeeccc-------------CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh
Confidence 99999999999999999999988766652 24888899999999998767778888888888777788
Q ss_pred HHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCccc
Q 001690 821 RVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRE 900 (1028)
Q Consensus 821 ~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~ 900 (1028)
-|-.+.++..+-+|+.|.+-++.+..- .+...+ ..-+++....+.... |.+- ..-.|.-.
T Consensus 314 ~LA~skDel~R~~AClAV~vlat~KE~-------E~~Vrk-----S~TlaLVEPlva~~D--P~~F-ARD~hd~a----- 373 (832)
T KOG3678|consen 314 PLAFSKDELLRLHACLAVAVLATNKEV-------EREVRK-----SGTLALVEPLVASLD--PGRF-ARDAHDYA----- 373 (832)
T ss_pred hhhcchHHHHHHHHHHHHhhhhhhhhh-------hHHHhh-----ccchhhhhhhhhccC--cchh-hhhhhhhh-----
Confidence 777778888999999999998765332 100000 000011111111110 0000 00000000
Q ss_pred chhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHH
Q 001690 901 TFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMI 980 (1028)
Q Consensus 901 ~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~ 980 (1028)
-=..-.-+..||-+|.+.--+.+..++.-++.=+.- ...+.-.+++.+-|+|+.|-++..+.|+..-.-|-.+|.-|
T Consensus 374 --QG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaI-Ks~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 374 --QGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAI-KSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred --ccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHH-HHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 000112467888888876655555444333211110 01223356888999999999999887776666666666544
No 109
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.79 E-value=0.028 Score=64.32 Aligned_cols=161 Identities=13% Similarity=0.115 Sum_probs=89.8
Q ss_pred CcHHHHHHHHhccCCChhHHHHHHHH-HHHHHcCCCCCccccccc-chhhcc---------cccHHHHHHHhcCCCHHHH
Q 001690 576 ATIPLLLGLIQFVRSDPHLKHEAAEI-LALMVGGCQHPQFELHHG-LQELQS---------EHNVNVFLQLIANTERETK 644 (1028)
Q Consensus 576 g~v~~L~~lL~~~~~~~~l~~~a~~~-L~nL~~~~~~~~~~~~~~-~~~l~~---------~g~v~~Lv~lL~~~~~~~~ 644 (1028)
|.+...+..|.....+..+.+.-... |-.+...+. ..++.-++ ...+.+ ...|...+.+|++..|+++
T Consensus 543 ~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~-t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR 621 (975)
T COG5181 543 GLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT-TVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVR 621 (975)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc-cccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHH
Confidence 67777777776554444444443333 333333221 11111000 011111 2356677888999999999
Q ss_pred HHHHHHHHHhhcCCHHH--HHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHH
Q 001690 645 IQFLHLLVKLCYKSEKV--RNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAA 722 (1028)
Q Consensus 645 ~~a~~aL~~L~~~~~~~--~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~ 722 (1028)
.+++.....|+.--..+ -+.+.. .| -.|.+-+....+++.-...++++.+...+.-..+... ..+.+|.|.-
T Consensus 622 ~~aadl~~sl~~vlk~c~e~~~l~k-lg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP---i~~ilP~ltP 695 (975)
T COG5181 622 IRAADLMGSLAKVLKACGETKELAK-LG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP---ISGILPSLTP 695 (975)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHH-Hh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc---hhhccccccH
Confidence 99999887775321111 112222 22 2456677888888888888888887643333344444 2477888888
Q ss_pred hccCCCCHHHHHHHHHHHhcCC
Q 001690 723 IFTCSPDVEERSLAAGIISQLP 744 (1028)
Q Consensus 723 lL~~~~~~~~~~~a~~~L~nL~ 744 (1028)
+|.+... .+.......++.++
T Consensus 696 ILrnkh~-Kv~~nti~lvg~I~ 716 (975)
T COG5181 696 ILRNKHQ-KVVANTIALVGTIC 716 (975)
T ss_pred hhhhhhH-HHhhhHHHHHHHHH
Confidence 8887654 44444444444333
No 110
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0016 Score=73.58 Aligned_cols=334 Identities=16% Similarity=0.197 Sum_probs=205.4
Q ss_pred hccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHH-hchhHHHHHhhc-cC-CchhHHHHHHHHhhhchh-hh
Q 001690 370 AGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVE-AGAVRRIVKQIC-KG-ETMPEAIEVLSELTKRET-LG 444 (1028)
Q Consensus 370 ~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-~g~i~~lv~~L~-~~-e~~~~A~~~L~~Ls~~~~-~~ 444 (1028)
++.+|+.+.-++. +..+|.-|++.|+|+++-. |..+.. -+.|......+. .. ...+.++..|-.|-+.-- -+
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~---k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA---KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHh---ccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 4567777777777 8899999999999998855 333222 222222222232 23 455666666666633211 01
Q ss_pred hhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHH----h
Q 001690 445 EKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRN----M 520 (1028)
Q Consensus 445 ~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~----L 520 (1028)
..-...++.||.|-.-+..-++..+...+.-|..|-..++..-.=.-....+-|+.+|.+.+++++..+-.+|.+ +
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 101223566777776666778888888888887775554321111112456778889999999998766655554 4
Q ss_pred hcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHH
Q 001690 521 RLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAE 600 (1028)
Q Consensus 521 a~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~ 600 (1028)
.+.|..- --...++.++.-+.++.+..+..|+.-+.....-+...--..-. |++..++.++.+... ...++.+..
T Consensus 240 ~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s-~il~~iLpc~s~~e~-~~i~~~a~~ 314 (675)
T KOG0212|consen 240 RSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLS-GILTAILPCLSDTEE-MSIKEYAQM 314 (675)
T ss_pred hcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhh-hhhhhcccCCCCCcc-ccHHHHHHH
Confidence 4444432 12346788899999999999999988888775543222222222 677777777765432 344444443
Q ss_pred H---HHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHh
Q 001690 601 I---LALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFS 677 (1028)
Q Consensus 601 ~---L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~ 677 (1028)
+ |..++...... +.+.=...+..|...+.+...+++..++..+..|-...+.-.-... ....+.|..
T Consensus 315 ~n~~l~~l~s~~~~~--------~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~--~~if~tLL~ 384 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLK--------EEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN--DSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHhhhhhc--------cccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc--cHHHHHHHH
Confidence 2 34444422211 1111223567778888899999999999988887665543222222 467778888
Q ss_pred hhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 678 SLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 678 Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
-|...++++...+..++.+++.++..... -.++..|..+....+
T Consensus 385 tLsd~sd~vvl~~L~lla~i~~s~~~~~~-------~~fl~sLL~~f~e~~ 428 (675)
T KOG0212|consen 385 TLSDRSDEVVLLALSLLASICSSSNSPNL-------RKFLLSLLEMFKEDT 428 (675)
T ss_pred hhcCchhHHHHHHHHHHHHHhcCcccccH-------HHHHHHHHHHHhhhh
Confidence 88888889999999999999954332111 134566666665543
No 111
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.15 Score=58.24 Aligned_cols=339 Identities=10% Similarity=0.028 Sum_probs=197.3
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhcc----C---CchhHHHHHHHHhhhchhhhhhh
Q 001690 376 LVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICK----G---ETMPEAIEVLSELTKRETLGEKI 447 (1028)
Q Consensus 376 Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~----~---e~~~~A~~~L~~Ls~~~~~~~~i 447 (1028)
..+-|++ .+..-..|...+..++..+- ..+.+|.+...+.. + ..+..++.++.+.+........+
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~El-------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li 171 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARMEL-------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI 171 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhC-------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence 3456666 77777777777776665431 13455555544433 3 56788889999987765544444
Q ss_pred hcccchHHHHHHHh-hc-CChhhHHHHHHHHhc-cccCchhHHHHHHcC-CchhHHHhhcCCCHHHHHHHHHHHHHhh-c
Q 001690 448 GNTKDCITIMVSLL-HN-NNPNLSQKAHDVLQN-LSHNTHFAVKMAEAG-YFQPFVACFNRGSQETRALMASALRNMR-L 522 (1028)
Q Consensus 448 ~~~~g~I~~Lv~lL-~~-~~~~~~~~a~~~L~n-L~~~~~n~~~i~~~G-~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~ 522 (1028)
...+..+-.+|.-- ++ .+..++..|+.+|.+ |-.-.+|-..--+.+ .++.....-..++.+++..+-.+|.++. .
T Consensus 172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 44334444454433 33 345677788888887 322222211111112 2333444446677889999989998883 3
Q ss_pred CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHH------------------HHHhCCCcHHHHHHH
Q 001690 523 DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVK------------------HLLLDPATIPLLLGL 584 (1028)
Q Consensus 523 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~------------------~lv~~~g~v~~L~~l 584 (1028)
.-.....+.+.-........+++.+.++.-.|+..-..+|...-... ..+. .++|.|++|
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~--dvlP~lL~L 329 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVA--DVLPELLSL 329 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHH--HHHHHHHHH
Confidence 33333344443334445677889999998888876666665421111 1122 378999999
Q ss_pred HhccCCC-----hhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc----CCCHHHHHHHHHHHHHhh
Q 001690 585 IQFVRSD-----PHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA----NTERETKIQFLHLLVKLC 655 (1028)
Q Consensus 585 L~~~~~~-----~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~----~~~~~~~~~a~~aL~~L~ 655 (1028)
|...+++ =...-.|...|.-.+... ....+.+.+.+++ +++-..++.++.++..+.
T Consensus 330 L~~q~ed~~~DdWn~smaA~sCLqlfaq~~---------------gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm 394 (858)
T COG5215 330 LEKQGEDYYGDDWNPSMAASSCLQLFAQLK---------------GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVM 394 (858)
T ss_pred HHhcCCCccccccchhhhHHHHHHHHHHHh---------------hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence 9873322 111223333344443321 2234556666654 566667888999999998
Q ss_pred cCC-HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhc--cCCCCHHH
Q 001690 656 YKS-EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIF--TCSPDVEE 732 (1028)
Q Consensus 656 ~~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL--~~~~~~~~ 732 (1028)
..+ ..++..+.. .++|.+..+...+.--++..++|++..+++ +-...+.. .+.++..+.-. .-.+..-.
T Consensus 395 ~gp~~~~lT~~V~--qalp~i~n~m~D~~l~vk~ttAwc~g~iad-~va~~i~p-----~~Hl~~~vsa~liGl~D~p~~ 466 (858)
T COG5215 395 HGPCEDCLTKIVP--QALPGIENEMSDSCLWVKSTTAWCFGAIAD-HVAMIISP-----CGHLVLEVSASLIGLMDCPFR 466 (858)
T ss_pred cCccHHHHHhhHH--hhhHHHHHhcccceeehhhHHHHHHHHHHH-HHHHhcCc-----cccccHHHHHHHhhhhccchH
Confidence 887 566666664 899999998887777999999999999993 32222221 23444433211 11122234
Q ss_pred HHHHHHHHhcCCCC
Q 001690 733 RSLAAGIISQLPKD 746 (1028)
Q Consensus 733 ~~~a~~~L~nL~~~ 746 (1028)
..++.+..-|+..+
T Consensus 467 ~~ncsw~~~nlv~h 480 (858)
T COG5215 467 SINCSWRKENLVDH 480 (858)
T ss_pred HhhhHHHHHhHHHh
Confidence 45666676676553
No 112
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0014 Score=78.07 Aligned_cols=360 Identities=12% Similarity=0.162 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHhc-CChhhhHHHHh----hccHHHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHH
Q 001690 346 RRKSALEEMKNIM-ELPQYAEKAAK----AGLIPKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIV 418 (1028)
Q Consensus 346 ~~~~al~~L~~l~-~~~~~r~~i~~----~g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv 418 (1028)
.+.-++.+|+++. .+|+-...+.. .|..|.+..+|.. ++.++..|+..+..+..+. +.-+.+++.|.+..+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHH
Confidence 4455889999988 77765443322 4677888888887 8889999999999998888 7788888999999999
Q ss_pred HhhccC-CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhh-cCChhhHHHHHHHHhccccCch--hHHHHHHcCC
Q 001690 419 KQICKG-ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLH-NNNPNLSQKAHDVLQNLSHNTH--FAVKMAEAGY 494 (1028)
Q Consensus 419 ~~L~~~-e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~-~~~~~~~~~a~~~L~nL~~~~~--n~~~i~~~G~ 494 (1028)
.+|.+. ..++.++.+|+.|+.+.+....-.. .|++.-+..++. +..++.+..|+..|..|...+- -+..|-=-..
T Consensus 1820 ~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHSQPSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHhcChHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 999998 9999999999999998876666666 588888877776 4556777788888888865431 1111100001
Q ss_pred ch-hHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhh-------CCcHHHHHHHh-c--CCCHHH-------------
Q 001690 495 FQ-PFVACFNRGSQETRALMASALRNMRLDESSIKTLKD-------RQFIHNVIQML-S--SNSPVC------------- 550 (1028)
Q Consensus 495 v~-~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~-------~g~i~~Lv~lL-~--s~~~~~------------- 550 (1028)
+| .++..+.++ |+ .++.++ ..+.++-+.|.. +|.|..++.-+ + ..++.+
T Consensus 1899 LP~~f~d~~RD~-PE---AaVH~f---E~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1899 LPEIFADSLRDS-PE---AAVHMF---ESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred chHHHHHHHhcC-HH---HHHHHH---hccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence 11 123333332 21 222222 222222222222 12233332211 1 111111
Q ss_pred --HHHHHHHHH--HHhcCC----HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchh
Q 001690 551 --KSACLKCIK--TLIAHS----KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQE 622 (1028)
Q Consensus 551 --~~~A~~aL~--nL~~~~----~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~ 622 (1028)
.|.+++-.. ..-..+ .+-+.+.. |.+..+.+++...+++...-+....++..|.+..+.. ...
T Consensus 1972 a~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~--~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~L-------ADq 2042 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVVGPGFNLRHPKLFLT--ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNL-------ADQ 2042 (2235)
T ss_pred hccCcccchhhhHHHhhCCCCcccCHHHHHH--HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcch-------hhh
Confidence 112222111 111111 11222222 5688888888877766555556666666666654432 235
Q ss_pred hcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCC
Q 001690 623 LQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNP 702 (1028)
Q Consensus 623 l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~ 702 (1028)
+-..|-+|+++.-+...+..+-..|+++|..|+.+. .+...|.. -..+.+++..+...-.-+- -|+.+|..+-....
T Consensus 2043 ip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~-l~~i~~~m~~mkK~~~~~G-LA~EalkR~~~r~~ 2119 (2235)
T KOG1789|consen 2043 LPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQ-LPCIDGIMKSMKKQPSLMG-LAAEALKRLMKRNT 2119 (2235)
T ss_pred CCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhc-cccchhhHHHHHhcchHHH-HHHHHHHHHHHHhH
Confidence 778899999999988666556688999999998654 56666666 6777778887765443332 67777777763222
Q ss_pred CCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 703 NGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 703 ~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
++-+++. ...|.++.|+++|+...
T Consensus 2120 ~eLVAQ~--LK~gLvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2120 GELVAQM--LKCGLVPYLLQLLDSST 2143 (2235)
T ss_pred HHHHHHH--hccCcHHHHHHHhcccc
Confidence 2334444 46788999999997754
No 113
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.4e-05 Score=87.37 Aligned_cols=71 Identities=28% Similarity=0.533 Sum_probs=56.2
Q ss_pred CCCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccC-----CcCccchhhhHHHHHHhh
Q 001690 256 YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLD-----LMPNLSLRSSIEEWKQRE 327 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~-----l~~n~~l~~~i~~~~~~~ 327 (1028)
.+..+|.|-+|...+.+||+++|||+||..||.+..+ ....||.|+..+.... ..+|..+..+|..|+...
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4468999999999999999999999999999999777 5678999999887521 223555556666666543
No 114
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.64 E-value=2.3e-05 Score=89.28 Aligned_cols=67 Identities=34% Similarity=0.748 Sum_probs=54.8
Q ss_pred CCCcccCcCccccccCceE-ccCcccchHHHHHHHHhcCCCCCCCccccccccCCcC-ccchhhhHHHHH
Q 001690 257 PIESLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP-NLSLRSSIEEWK 324 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~-n~~l~~~i~~~~ 324 (1028)
+.+++.||+|..++.||+. +.|||.||+.|+..|... +..||.|++.+......| ....++++..|.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 5678999999999999999 599999999999999985 889999998887655554 344556665553
No 115
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.63 E-value=0.011 Score=66.98 Aligned_cols=278 Identities=18% Similarity=0.198 Sum_probs=183.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCC--ChhHHHHHHHHHHHhcCCCCCCCC
Q 001690 629 VNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSD--QPVVRRWAMRLIHCISEGNPNGVP 706 (1028)
Q Consensus 629 v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~--~~~v~~~A~~~L~~Ls~~~~~~~i 706 (1028)
.+.+..++-+++.+++..+.+++..+..+....+....- +.--.++.-+..+ +..-|+.|.++++.+.+...+..
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l--~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~- 103 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKL--HIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK- 103 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHc--CCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc-
Confidence 334444555556999999999999998887766665543 4333444444433 34678899999999984322211
Q ss_pred CCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhh
Q 001690 707 LPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDAS 786 (1028)
Q Consensus 707 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~ 786 (1028)
. ...+.+..+|.+..+.++ ..+..|..+|+.++-.+++ .+.++||+..|++.+.+ | ...
T Consensus 104 --~--~~~~vvralvaiae~~~D-~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d------~-------~~~ 162 (371)
T PF14664_consen 104 --E--IPRGVVRALVAIAEHEDD-RLRRICLETLCELALLNPE---LVAECGGIRVLLRALID------G-------SFS 162 (371)
T ss_pred --c--CCHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh------c-------cHh
Confidence 1 345788999999888665 7889999999999987775 58899999999999985 2 134
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcC-------CH--HHHHHHHHHHHhhhhcccccccccccccc
Q 001690 787 LLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTG-------SS--LAKQRAASALADLSQSTSVSVSNATLTAK 857 (1028)
Q Consensus 787 ~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-------~~--~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~ 857 (1028)
..+.++.++.++- ++|..++.+...--+..++.-..+. +. +.-+.++.++..+-++...
T Consensus 163 ~~~~l~~~lL~lL--d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G---------- 230 (371)
T PF14664_consen 163 ISESLLDTLLYLL--DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG---------- 230 (371)
T ss_pred HHHHHHHHHHHHh--CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc----------
Confidence 7778888888887 5677777666544444444433322 11 2333444455444433222
Q ss_pred cccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhh
Q 001690 858 QTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLA 937 (1028)
Q Consensus 858 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~ 937 (1028)
.++ ||.-...+++-||+.|..+++++++..+..+..++.
T Consensus 231 -----------------Ll~------------------------l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 231 -----------------LLY------------------------LSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred -----------------eee------------------------eecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 111 112223578899999999999999999998877764
Q ss_pred cccc-----------------h----------------------------hhH----HHHHHhccchHHHHHHHhcC-Ch
Q 001690 938 DHST-----------------L----------------------------SHA----IAVIVDSQGVLAILQVLEKG-SL 967 (1028)
Q Consensus 938 d~~~-----------------~----------------------------~~~----~~~i~~~~~i~~l~~ll~~~-~~ 967 (1028)
-+.. . .++ ..++.++|-++.|+++.... |+
T Consensus 270 ik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~ 349 (371)
T PF14664_consen 270 IKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDS 349 (371)
T ss_pred CCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCc
Confidence 3220 0 000 23566778888888888755 77
Q ss_pred hHHHHHHHHHHHHHhh
Q 001690 968 SAKTKALDLFQMIQKH 983 (1028)
Q Consensus 968 ~~~~~A~~~l~~~~~~ 983 (1028)
.+..||.-+|..++..
T Consensus 350 ~l~~KAtlLL~elL~l 365 (371)
T PF14664_consen 350 SLSRKATLLLGELLHL 365 (371)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7888888877777654
No 116
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.61 E-value=0.0045 Score=72.27 Aligned_cols=267 Identities=15% Similarity=0.190 Sum_probs=166.5
Q ss_pred HHHHHHHhhhchhhhhhhhcccchHHHHHHHh----------hcCChhhHHHHHHHHhccccCc-hhHHHHHHcCCchhH
Q 001690 430 AIEVLSELTKRETLGEKIGNTKDCITIMVSLL----------HNNNPNLSQKAHDVLQNLSHNT-HFAVKMAEAGYFQPF 498 (1028)
Q Consensus 430 A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL----------~~~~~~~~~~a~~~L~nL~~~~-~n~~~i~~~G~v~~L 498 (1028)
|+.+|+-|++++.+...+.. ..++..|.++- ...++.+...|..+|.|+.... .-+...++.|+.+.+
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 35677888888888888877 57777777776 2457789999999999987665 456666788999999
Q ss_pred HHhhcCC-----CHHHHHHHHHHHHHh-hcCcchHHHHhh-CCcHHHHHHHhc----C----C---------CHHHHHHH
Q 001690 499 VACFNRG-----SQETRALMASALRNM-RLDESSIKTLKD-RQFIHNVIQMLS----S----N---------SPVCKSAC 554 (1028)
Q Consensus 499 v~lL~~~-----~~~~~~~a~~~L~~L-a~~~~~~~~i~~-~g~i~~Lv~lL~----s----~---------~~~~~~~A 554 (1028)
+..|+.. +.++..-....|.-+ +..++.+..+++ .+++..++..|. . . +......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999776 788888888998888 567777777765 577888777664 1 0 22335677
Q ss_pred HHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhcc---C----CChhHHHHHHHHHHHHHcCCCCC----cccccccchhh
Q 001690 555 LKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFV---R----SDPHLKHEAAEILALMVGGCQHP----QFELHHGLQEL 623 (1028)
Q Consensus 555 ~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~---~----~~~~l~~~a~~~L~nL~~~~~~~----~~~~~~~~~~l 623 (1028)
++++.|+..+......-... +.+++|+.++..- . +-......+..+|.|+--..... ....+.....-
T Consensus 160 LKllFNit~~~~~~~~~~~~-~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFS-PSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHhhhccCcccchhhh-HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 89999997664332221111 4666666665532 1 11344566677777662211000 00000000112
Q ss_pred cccccHHHHHHHhcCC--------CHHHHHHHHHHHHHhhcCCHHHHHHHHhh---------------hchHHHHHhhhc
Q 001690 624 QSEHNVNVFLQLIANT--------ERETKIQFLHLLVKLCYKSEKVRNLIESN---------------NDAITQLFSSLD 680 (1028)
Q Consensus 624 ~~~g~v~~Lv~lL~~~--------~~~~~~~a~~aL~~L~~~~~~~~~~i~~~---------------~g~v~~Lv~Ll~ 680 (1028)
.....+..|+.+|... -.+...-.+.+|..++..+..+|+.++.- ...-..|++|+.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 3344677777776521 12344456667777777766666666641 122335666666
Q ss_pred CCChhHHHHHHHHHHHhc
Q 001690 681 SDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 681 ~~~~~v~~~A~~~L~~Ls 698 (1028)
+..+.++..++.+|+.|+
T Consensus 319 ~~~~~~k~~vaellf~Lc 336 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLC 336 (446)
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 666666666666666666
No 117
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.60 E-value=0.006 Score=69.10 Aligned_cols=165 Identities=22% Similarity=0.280 Sum_probs=116.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 001690 627 HNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVP 706 (1028)
Q Consensus 627 g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i 706 (1028)
..++.++.++.+.++.++..++..+..+. . ..+++.|..++.+.++.+|..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~-~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------S-EEAVPLLRELLSDEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------h-HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence 47888999999999999999888865542 2 578999999999999999999999777665
Q ss_pred CCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCC---Ccc
Q 001690 707 LPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTP---ACQ 783 (1028)
Q Consensus 707 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~---~~~ 783 (1028)
.+..++.|+..|..+.+..++..|+.+|+.+-. ..++.+++..+..... +. .. ...
T Consensus 103 ------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~---~~-a~~~~~~~ 161 (335)
T COG1413 103 ------DPEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDS---GS-AAAALDAA 161 (335)
T ss_pred ------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchh---hh-hhhhccch
Confidence 134689999999975556899999999998644 2337778888874210 00 00 000
Q ss_pred hhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhc
Q 001690 784 DASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQS 844 (1028)
Q Consensus 784 ~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~ 844 (1028)
...+...++.++.. +.+...++.+...+.+.+..++..|+.+|+.+...
T Consensus 162 ~~~~r~~a~~~l~~------------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 162 LLDVRAAAAEALGE------------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHHHHH------------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 00112222222222 33456688899999999999999999999987643
No 118
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.14 Score=58.53 Aligned_cols=436 Identities=12% Similarity=0.048 Sum_probs=239.2
Q ss_pred hccC-CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhc--CChhhHHHHHHHHhcc-ccCchhHHHHHHc---C
Q 001690 421 ICKG-ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHN--NNPNLSQKAHDVLQNL-SHNTHFAVKMAEA---G 493 (1028)
Q Consensus 421 L~~~-e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~--~~~~~~~~a~~~L~nL-~~~~~n~~~i~~~---G 493 (1028)
|+.+ ..+..|-.-|.+++..+- ...+..|++.|-+ ..+..+..|.-+|.|- ..+++.+.+=... |
T Consensus 15 LspD~n~rl~aE~ql~~l~~~dF--------~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~ 86 (858)
T COG5215 15 LSPDPNARLRAEAQLLELQSGDF--------EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLG 86 (858)
T ss_pred CCCCCCccccHHHHHHHhccccH--------HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc
Confidence 4444 677777777888866431 2345566666654 3566777777788874 3333222111111 1
Q ss_pred -------Cch-hHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHH----HHHhcCCC-HHHHHHHHHHHHH
Q 001690 494 -------YFQ-PFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNV----IQMLSSNS-PVCKSACLKCIKT 560 (1028)
Q Consensus 494 -------~v~-~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~L----v~lL~s~~-~~~~~~A~~aL~n 560 (1028)
.|. ...+-|.+..|..-..|+..++.++..+ + -.|.-|-| +.....+. ..++.+++.++++
T Consensus 87 ~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E-----l-p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 87 MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME-----L-PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----C-ccccchHHHHHHHHhccccCchHhHHHHHHHHHH
Confidence 111 1234456666777777777777664321 1 12333444 44444433 4578999999999
Q ss_pred HhcCCHhHHHHHhCC-CcHHHHHH-HHhccCCChhHHHHHHHHHHHHHc---CCCCCcccccccchhhcccccHHHHHHH
Q 001690 561 LIAHSKMVKHLLLDP-ATIPLLLG-LIQFVRSDPHLKHEAAEILALMVG---GCQHPQFELHHGLQELQSEHNVNVFLQL 635 (1028)
Q Consensus 561 L~~~~~~~~~lv~~~-g~v~~L~~-lL~~~~~~~~l~~~a~~~L~nL~~---~~~~~~~~~~~~~~~l~~~g~v~~Lv~l 635 (1028)
.|..... +.++... .++-.++. -+++++ ...++-.|..+|.+=+. +....+. -.....+..++.
T Consensus 161 ~ces~~P-e~li~~sN~il~aiv~ga~k~et-~~avRLaaL~aL~dsl~fv~~nf~~E~---------erNy~mqvvcea 229 (858)
T COG5215 161 HCESEAP-EDLIQMSNVILFAIVMGALKNET-TSAVRLAALKALMDSLMFVQGNFCYEE---------ERNYFMQVVCEA 229 (858)
T ss_pred HhhccCH-HHHHHHhhHHHHHHHHhhcccCc-hHHHHHHHHHHHHHHHHHHHHhhcchh---------hhchhheeeehh
Confidence 9876533 2233221 23333333 233333 35566677777776222 1111111 112234445555
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcc
Q 001690 636 IANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKET 715 (1028)
Q Consensus 636 L~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~ 715 (1028)
-.+++.+++..+..+|..+..-.-+...-..+ .-.-....+.++++++++...|+...+.+++. ++.-.
T Consensus 230 tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWsticeE----eid~~------ 298 (858)
T COG5215 230 TQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEE----EIDGE------ 298 (858)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH----HhhhH------
Confidence 66788899999999998887655333334444 23334456789999999999999999888832 11110
Q ss_pred cHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHH
Q 001690 716 AINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAAL 795 (1028)
Q Consensus 716 ~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL 795 (1028)
--.+.+...+ ..|.... .-.-++++|.|++||....+ ....+.|-...+++++
T Consensus 299 ---~e~~~~pe~p----------------~qn~~fa-~aav~dvlP~lL~LL~~q~e-------d~~~DdWn~smaA~sC 351 (858)
T COG5215 299 ---MEDKYLPEVP----------------AQNHGFA-RAAVADVLPELLSLLEKQGE-------DYYGDDWNPSMAASSC 351 (858)
T ss_pred ---HHHhhcccCc----------------hhhcchH-HHHHHHHHHHHHHHHHhcCC-------CccccccchhhhHHHH
Confidence 0111111111 0111110 11123578999999995211 2223456666666555
Q ss_pred HHhcCCCChHHHHHHhhcCCHHHHHHH----hhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhh
Q 001690 796 LHFTDPTKPELQRQVGKLEVYPSLIRV----LSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKL 871 (1028)
Q Consensus 796 ~~l~~~~~~~~~~~i~~~~~i~~Lv~l----L~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 871 (1028)
..+-. + +....++.+.+.. +++.+..-+..|+.|++.+-.+... -+
T Consensus 352 Lqlfa----q----~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~------~~---------------- 401 (858)
T COG5215 352 LQLFA----Q----LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE------DC---------------- 401 (858)
T ss_pred HHHHH----H----HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH------HH----------------
Confidence 54431 1 1222223333333 5567777888888888876554333 00
Q ss_pred hhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHh
Q 001690 872 LLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVD 951 (1028)
Q Consensus 872 l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~ 951 (1028)
. | .++ ..+++.+..+..++--.|.+.++|+++.|. |.. ...|.-
T Consensus 402 -------l---------------------T-~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~ia-d~v-----a~~i~p 445 (858)
T COG5215 402 -------L---------------------T-KIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIA-DHV-----AMIISP 445 (858)
T ss_pred -------H---------------------H-hhH-HhhhHHHHHhcccceeehhhHHHHHHHHHH-HHH-----HHhcCc
Confidence 0 0 011 236778888877777889999999999998 322 234555
Q ss_pred ccchHHHHHHHh---cCChhHHHHHHHHHHHHHhhhh
Q 001690 952 SQGVLAILQVLE---KGSLSAKTKALDLFQMIQKHTR 985 (1028)
Q Consensus 952 ~~~i~~l~~ll~---~~~~~~~~~A~~~l~~~~~~~~ 985 (1028)
.|-+++.++..- ..++..-.+..|.++++..+-.
T Consensus 446 ~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 446 CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 555555444333 3557777888888888876544
No 119
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.52 E-value=7.5e-05 Score=76.60 Aligned_cols=67 Identities=28% Similarity=0.700 Sum_probs=57.1
Q ss_pred ccCcCccccccCceEc-cCcccchHHHHHHHHhcCCCCCCCcccc-ccccCCcCccchhhhHHHHHHhh
Q 001690 261 LVCPLCNELMEDPVAI-VCGHSFERKAIQEHFQRGGKNCPTCRQE-LLSLDLMPNLSLRSSIEEWKQRE 327 (1028)
Q Consensus 261 ~~Cpic~~~~~dPv~~-~cght~c~~ci~~~~~~~~~~CP~~~~~-l~~~~l~~n~~l~~~i~~~~~~~ 327 (1028)
+.||.|..+++.|+-+ .|||+||..||+.-+-.....||.|... +....+.|++..+.-|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999988 7999999999998887677899999664 33467889998888888877644
No 120
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.51 E-value=0.0051 Score=69.65 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=152.0
Q ss_pred chHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHh
Q 001690 452 DCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLK 531 (1028)
Q Consensus 452 g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~ 531 (1028)
..++.++.++.+.+..++..|+..+..+. ..-++|.|..+|.+.++.++..++.+|+.+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 57889999999988899999988866553 234789999999999999999999877754 3
Q ss_pred hCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCC---------C-hhHHHHHHH
Q 001690 532 DRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS---------D-PHLKHEAAE 600 (1028)
Q Consensus 532 ~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~---------~-~~l~~~a~~ 600 (1028)
....+++|+.+|. +++..++..|+++|..+-.. .++.+|+..+..... . ...+..+..
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 3457899999999 58999999999999986443 457777777775431 0 112223333
Q ss_pred HHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhc
Q 001690 601 ILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLD 680 (1028)
Q Consensus 601 ~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~ 680 (1028)
.|.. +.....++.+..++......++..++.+|..+...+ ....+.+...+.
T Consensus 172 ~l~~------------------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~ 223 (335)
T COG1413 172 ALGE------------------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALS 223 (335)
T ss_pred HHHH------------------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhc
Confidence 2222 233447888999999999999999999998876554 145677888888
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCC
Q 001690 681 SDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPD 729 (1028)
Q Consensus 681 ~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~ 729 (1028)
.++..++..++.+|..+-. ......++..+.+.+.
T Consensus 224 ~~~~~vr~~~~~~l~~~~~--------------~~~~~~l~~~l~~~~~ 258 (335)
T COG1413 224 DESLEVRKAALLALGEIGD--------------EEAVDALAKALEDEDV 258 (335)
T ss_pred CCCHHHHHHHHHHhcccCc--------------chhHHHHHHHHhccch
Confidence 8899999988888876651 2356777777777664
No 121
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.039 Score=64.04 Aligned_cols=249 Identities=16% Similarity=0.138 Sum_probs=150.6
Q ss_pred chHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHh
Q 001690 452 DCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLK 531 (1028)
Q Consensus 452 g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~ 531 (1028)
-.+..|..-+..+.+.+|.....+|..+....+... ..-..+-+.+++..++-.-+..++..++.+..+. .-..+.
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~ 171 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLK 171 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhh
Confidence 345566666667777788777777766643322110 0113455677777777777788888888776543 234455
Q ss_pred hCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhcc-CCChhHHHHHHHHHHHHHcCC
Q 001690 532 DRQFIHNVIQMLSSNSP-VCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFV-RSDPHLKHEAAEILALMVGGC 609 (1028)
Q Consensus 532 ~~g~i~~Lv~lL~s~~~-~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~-~~~~~l~~~a~~~L~nL~~~~ 609 (1028)
+.+.+..|-+.+.+... ..++.+.-+.-..+.+-. . -.+++.++.+-.++.+- +....+++.|..+...+...-
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~-~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~ 247 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---P-PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL 247 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---C-CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc
Confidence 67788888888875443 334423222222222110 1 12336777777777654 333566777766666655421
Q ss_pred CCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHH
Q 001690 610 QHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRW 689 (1028)
Q Consensus 610 ~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~ 689 (1028)
... .-.-.+++++.=+....=..+..++..+..++...+........ ..+|.|.+.|.+..+++|..
T Consensus 248 ~~~-----------aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp--~iiP~lsevl~DT~~evr~a 314 (569)
T KOG1242|consen 248 SAY-----------AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP--DLIPVLSEVLWDTKPEVRKA 314 (569)
T ss_pred Ccc-----------hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh--HhhHHHHHHHccCCHHHHHH
Confidence 110 01113344444444334456678888999998888776666554 89999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 690 AMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 690 A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
+..+|-.+..--.+.+|. ..+|.|+.-+.+++
T Consensus 315 ~~~~l~~~~svidN~dI~-------~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 315 GIETLLKFGSVIDNPDIQ-------KIIPTLLDALADPS 346 (569)
T ss_pred HHHHHHHHHHhhccHHHH-------HHHHHHHHHhcCcc
Confidence 999999998433333322 34666777666655
No 122
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.2 Score=59.47 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=133.8
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhC
Q 001690 454 ITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDR 533 (1028)
Q Consensus 454 I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~ 533 (1028)
-.-|..||.+.....+..|+.-+.++-....+. ...+|..|+...+.+.+++...--.|..-+....+-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 346888999988888988987666654444442 235788888888999999887665555555433322211
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhc--cCCChhHHHHHHHHHHHHHcCCCC
Q 001690 534 QFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQF--VRSDPHLKHEAAEILALMVGGCQH 611 (1028)
Q Consensus 534 g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~--~~~~~~l~~~a~~~L~nL~~~~~~ 611 (1028)
-|..+-+-|+++++.+|-.|+++|..+=.. -+.|.++-.++. .+..+.++..|+-++-.|-.-..+
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsIRvp-----------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSIRVP-----------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhcchh-----------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 367788889999999999999999875222 122222222221 122367888888888888775543
Q ss_pred CcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHH
Q 001690 612 PQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAM 691 (1028)
Q Consensus 612 ~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~ 691 (1028)
++. ..+..+-.||...+|-+...|+.|+-.+|.+. -.+| .+-...|.+++-.-++=-+....
T Consensus 177 ~k~------------qL~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI---HknyrklC~ll~dvdeWgQvvlI 238 (968)
T KOG1060|consen 177 QKD------------QLEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI---HKNYRKLCRLLPDVDEWGQVVLI 238 (968)
T ss_pred hHH------------HHHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh---hHHHHHHHhhccchhhhhHHHHH
Confidence 332 24555666778889999999999999998654 2233 24556677777655554444445
Q ss_pred HHHHHhc
Q 001690 692 RLIHCIS 698 (1028)
Q Consensus 692 ~~L~~Ls 698 (1028)
.+|-.-+
T Consensus 239 ~mL~RYA 245 (968)
T KOG1060|consen 239 NMLTRYA 245 (968)
T ss_pred HHHHHHH
Confidence 4444334
No 123
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.43 E-value=0.00014 Score=61.79 Aligned_cols=48 Identities=29% Similarity=0.600 Sum_probs=36.7
Q ss_pred cccCcCccccccC-ceEc-cCcccchHHHHHHHHhcC--CCCCCCccccccc
Q 001690 260 SLVCPLCNELMED-PVAI-VCGHSFERKAIQEHFQRG--GKNCPTCRQELLS 307 (1028)
Q Consensus 260 ~~~Cpic~~~~~d-Pv~~-~cght~c~~ci~~~~~~~--~~~CP~~~~~l~~ 307 (1028)
+-.||.|...-.| |++. .|||.|...||.+|++.. +..||.||++...
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3456666665445 6654 799999999999999853 5799999998643
No 124
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.069 Score=62.59 Aligned_cols=214 Identities=13% Similarity=0.177 Sum_probs=146.3
Q ss_pred HHHHHhhccC--CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccC-chhHHHHHH
Q 001690 415 RRIVKQICKG--ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHN-THFAVKMAE 491 (1028)
Q Consensus 415 ~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~-~~n~~~i~~ 491 (1028)
+.++.+|.+. ..|+.|+.+|+.+.. .+.+.+ .-++|.|+.-|.++||.++..|+.+++.|+.. +.|...+
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFL--kYPeAl---r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-- 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFL--KYPEAL---RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-- 219 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHH--hhhHhH---hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc--
Confidence 4567777777 788999999988754 233333 36899999999999999999999999999865 4565443
Q ss_pred cCCchhHHHhhcC-CCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCC-HHHHHHHHHHHH--HHhcCCHh
Q 001690 492 AGYFQPFVACFNR-GSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNS-PVCKSACLKCIK--TLIAHSKM 567 (1028)
Q Consensus 492 ~G~v~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~--nL~~~~~~ 567 (1028)
-|.+.++|.+ .|.=+-.......++|+--+. .++. ..+++|..++.+-+ ......|+.++. |++...++
T Consensus 220 ---AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK-KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 220 ---APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK-KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ---cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh-hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 4778888843 333344555566666653221 2222 36899999998654 344455555442 44544455
Q ss_pred HHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHH
Q 001690 568 VKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQF 647 (1028)
Q Consensus 568 ~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a 647 (1028)
....++. .+..|-.++... ++.++..+.-++..+..... .. +. .--..++..|...++.++-.|
T Consensus 293 ~~asiqL--CvqKLr~fieds--DqNLKYlgLlam~KI~ktHp--~~--------Vq--a~kdlIlrcL~DkD~SIRlrA 356 (877)
T KOG1059|consen 293 HSASIQL--CVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHP--KA--------VQ--AHKDLILRCLDDKDESIRLRA 356 (877)
T ss_pred cHHHHHH--HHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCH--HH--------HH--HhHHHHHHHhccCCchhHHHH
Confidence 5666664 778888888744 46888888888888887432 11 11 123456788899999999999
Q ss_pred HHHHHHhhcCC
Q 001690 648 LHLLVKLCYKS 658 (1028)
Q Consensus 648 ~~aL~~L~~~~ 658 (1028)
+..|+.+.+..
T Consensus 357 LdLl~gmVskk 367 (877)
T KOG1059|consen 357 LDLLYGMVSKK 367 (877)
T ss_pred HHHHHHHhhhh
Confidence 99999987543
No 125
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0077 Score=68.33 Aligned_cols=267 Identities=16% Similarity=0.205 Sum_probs=177.0
Q ss_pred hhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHH-hchhHHHHHhhccC--CchhHHHHHHHHh----hhc
Q 001690 369 KAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVE-AGAVRRIVKQICKG--ETMPEAIEVLSEL----TKR 440 (1028)
Q Consensus 369 ~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-~g~i~~lv~~L~~~--e~~~~A~~~L~~L----s~~ 440 (1028)
-.+.||.|-.-+.. ++..|.-.+..|..|-.-.+ .+.+.- ..-++.++.+|.+. +++..+-.+|.+. ...
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 34677777777777 99999999998888866552 444444 66778889999888 6665555544443 322
Q ss_pred hhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHH-HHHHHHH---H
Q 001690 441 ETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQE-TRALMAS---A 516 (1028)
Q Consensus 441 ~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~-~~~~a~~---~ 516 (1028)
|.. .+....++.||.-++++++..+..|..-+.....-..+.....-+|++..++.++.+..+. .+..+.. -
T Consensus 243 P~s----~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 243 PSS----MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred ccc----cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 221 1446789999999999999999999988888766665555555567777777777655442 3333332 2
Q ss_pred HHHhhcCcchHHHHhhCC-cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHH
Q 001690 517 LRNMRLDESSIKTLKDRQ-FIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLK 595 (1028)
Q Consensus 517 L~~La~~~~~~~~i~~~g-~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~ 595 (1028)
|..+.+.+..+.. ++.| .+..|.+.+.+...+.|-.++.-+..|-....+.--.... ...+.|+.-|.+.+ ..+.
T Consensus 319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~-~if~tLL~tLsd~s--d~vv 394 (675)
T KOG0212|consen 319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHND-SIFLTLLKTLSDRS--DEVV 394 (675)
T ss_pred HHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhcc-HHHHHHHHhhcCch--hHHH
Confidence 3444444444433 4433 4778888888999999999999998886665554444444 78999999988665 3667
Q ss_pred HHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 001690 596 HEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCY 656 (1028)
Q Consensus 596 ~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 656 (1028)
..+...++++|.++.++.. -..+..|+.+......-....+.-++..||.
T Consensus 395 l~~L~lla~i~~s~~~~~~-----------~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 395 LLALSLLASICSSSNSPNL-----------RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHHHHHhcCcccccH-----------HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 8999999999997654311 1133344444444333344455555555553
No 126
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.37 E-value=0.15 Score=62.49 Aligned_cols=528 Identities=13% Similarity=0.055 Sum_probs=273.5
Q ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhhh-chhhhhhh
Q 001690 372 LIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTK-RETLGEKI 447 (1028)
Q Consensus 372 ~ip~Lv~lL~s~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~-~~~~~~~i 447 (1028)
.+|.+-+...++-.++..+..-+.++..+. ..++. .+.+......+... .++++++..|...+. .+.-..
T Consensus 122 lipf~~e~~~~~dev~~~~a~~~~~~~~~v-~~~~~---~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~-- 195 (759)
T KOG0211|consen 122 LIPFLTEAEDDEDEVLLDLAEQLGTFLPDV-GGPEY---AHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL-- 195 (759)
T ss_pred hhhHHHHhccchhHHHHHHHHHhcccchhc-cchhH---HHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH--
Confidence 566666666334555555555555554443 22221 12222222222222 557777777776644 221111
Q ss_pred hcccchHHHHHHHhhcCC-hhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcch
Q 001690 448 GNTKDCITIMVSLLHNNN-PNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESS 526 (1028)
Q Consensus 448 ~~~~g~I~~Lv~lL~~~~-~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 526 (1028)
. .-+-+|+..+..++ -..+..++.++..+...-.+ ..++...-+..-++-.+.++.++..++.-+++++..-..
T Consensus 196 -~--~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~ 270 (759)
T KOG0211|consen 196 -R--EHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES 270 (759)
T ss_pred -H--HHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH
Confidence 0 12223333333332 22334455555544433221 222332333334444677888888888888888654332
Q ss_pred HHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001690 527 IKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMV 606 (1028)
Q Consensus 527 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~ 606 (1028)
.....+.++.++++.......+++.|...+.++...-..-..... -..+.++.....++ ..+........+.+.
T Consensus 271 --~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~--~~~~~l~~~~~d~~--~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 271 --EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVK--SLTESLVQAVEDGS--WRVSYMVADKFSELS 344 (759)
T ss_pred --HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhh--hhhHHHHHHhcChh--HHHHHHHhhhhhhHH
Confidence 667788999999999998899999999999888543211113333 36677777776554 345556666566665
Q ss_pred cCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHHHHHhhhcCCChh
Q 001690 607 GGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS-EKVRNLIESNNDAITQLFSSLDSDQPV 685 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~~~ 685 (1028)
..=.. ......-+++...+++....+.+..++.-...++..- .....-+.. ...++.+-.+....+..
T Consensus 345 ~~~~~----------~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~-~~ilp~~~~lv~d~~~~ 413 (759)
T KOG0211|consen 345 SAVGP----------SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD-SSILPEVQVLVLDNALH 413 (759)
T ss_pred HHhcc----------ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch-hhhhHHHHHHHhcccch
Confidence 42110 1222335677777777766666665555444444322 112222333 45678888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHH
Q 001690 686 VRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHE 765 (1028)
Q Consensus 686 v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~ 765 (1028)
++.+.+.....++.-.+- +. .....++.++..+.+... .++.+....++.+-..++...........+|.+..
T Consensus 414 vr~a~a~~~~~~~p~~~k----~~--ti~~llp~~~~~l~de~~-~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e 486 (759)
T KOG0211|consen 414 VRSALASVITGLSPILPK----ER--TISELLPLLIGNLKDEDP-IVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE 486 (759)
T ss_pred HHHHHhccccccCccCCc----Cc--CccccChhhhhhcchhhH-HHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh
Confidence 988877777666621111 10 112234444545544432 55555554444443333333333334444444444
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhh----cCCHHHHHHHHHHHHhh
Q 001690 766 VICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLS----TGSSLAKQRAASALADL 841 (1028)
Q Consensus 766 lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~----s~~~~vk~~Aa~aL~~l 841 (1028)
+-... ..+....++ ..+..++.... ..+. .+.+..++. +....+++.|+..+.-+
T Consensus 487 l~~d~---------~wRvr~ail----~~ip~la~q~~----~~~~----~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l 545 (759)
T KOG0211|consen 487 LAEDL---------LWRVRLAIL----EYIPQLALQLG----VEFF----DEKLAELLRTWLPDHVYSIREAAARNLPAL 545 (759)
T ss_pred hccch---------hHHHHHHHH----HHHHHHHHhhh----hHHh----hHHHHHHHHhhhhhhHHHHHHHHHHHhHHH
Confidence 43310 011111111 11111110000 0111 122333333 33456788887777666
Q ss_pred hhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCC
Q 001690 842 SQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDME 921 (1028)
Q Consensus 842 s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d 921 (1028)
+..-.. -|+ ...-|+.+......++
T Consensus 546 ~~~~G~----------------------------~w~---------------------------~~~~i~k~L~~~~q~~ 570 (759)
T KOG0211|consen 546 VETFGS----------------------------EWA---------------------------RLEEIPKLLAMDLQDN 570 (759)
T ss_pred HHHhCc----------------------------chh---------------------------HHHhhHHHHHHhcCcc
Confidence 542111 011 0123556666666667
Q ss_pred ccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhh--hhhhcccchHHH
Q 001690 922 SGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRIT--DTLLQRSERILI 999 (1028)
Q Consensus 922 ~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~Lv 999 (1028)
-..|...+.++..|+.-- ...+....-++.+.++..++.+++|-+++..|.++.+.-... +.+- ...|+
T Consensus 571 y~~R~t~l~si~~la~v~------g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v---~pll~ 641 (759)
T KOG0211|consen 571 YLVRMTTLFSIHELAEVL------GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEV---LPLLE 641 (759)
T ss_pred cchhhHHHHHHHHHHHHh------ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHH---HHHHH
Confidence 778888888887665221 123444456677777777888889999999888888533321 1111 12445
Q ss_pred hhccc--cchHHHHHHHHHHhc
Q 001690 1000 QLLDD--DALKKKVALVLMQMN 1019 (1028)
Q Consensus 1000 ~~l~~--~~~~~~aa~~L~~l~ 1019 (1028)
.+.++ .++|-.|..++..+.
T Consensus 642 ~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 642 TLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HhccCcccchhHHHHHHHHHHH
Confidence 55555 666666666665443
No 127
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=7.7e-05 Score=77.56 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=44.2
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCcccccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSL 308 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~ 308 (1028)
.-.|+||+.-+.-||.++|+|.||.-||+--...+..+||+||++++++
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 4579999999999999999999999999987777778999999999764
No 128
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.35 E-value=0.00057 Score=60.52 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=71.1
Q ss_pred HHHHHHHh-hcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhh
Q 001690 454 ITIMVSLL-HNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKD 532 (1028)
Q Consensus 454 I~~Lv~lL-~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 532 (1028)
||.|++.| +++++.++..|+.+|.++.. ..++|.|+.+++++++.++..++.+|+.+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 68899999 78899999999999996621 135899999999999999999999999873 3
Q ss_pred CCcHHHHHHHhcCC-CHHHHHHHHHHHH
Q 001690 533 RQFIHNVIQMLSSN-SPVCKSACLKCIK 559 (1028)
Q Consensus 533 ~g~i~~Lv~lL~s~-~~~~~~~A~~aL~ 559 (1028)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 44889999999865 5666999998874
No 129
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=7.5e-05 Score=77.50 Aligned_cols=57 Identities=25% Similarity=0.500 Sum_probs=45.1
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhh
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRS 318 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~ 318 (1028)
.|.|-||.+.|.+||++.|||+||..|-.+.++ ....|++|.+.. +..+.+...|..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t-~g~~~~akeL~~ 297 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQT-HGSFNVAKELLV 297 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccc-cCCcceeccccc-ccccchHHHHHH
Confidence 488999999999999999999999999988887 446799998875 334444443433
No 130
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.1 Score=60.63 Aligned_cols=314 Identities=14% Similarity=0.126 Sum_probs=190.2
Q ss_pred cHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhh
Q 001690 372 LIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKI 447 (1028)
Q Consensus 372 ~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i 447 (1028)
..+.+.+++++ ....|..+...+..+..+. .-+.+.+.+.+..+.....+. ..++.+.-+....+.+ -..-
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~---Lg~~ 209 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGN---LGPP 209 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh---cCCC
Confidence 45667777877 7777888888888877765 234455567777777777665 2333222222222211 0111
Q ss_pred hcccchHHHHHHHhh---cCChhhHHHHHHHHhccccCchhHHHHHHcC----CchhHHHhhcCCCHHHHHHHHHHHHHh
Q 001690 448 GNTKDCITIMVSLLH---NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAG----YFQPFVACFNRGSQETRALMASALRNM 520 (1028)
Q Consensus 448 ~~~~g~I~~Lv~lL~---~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G----~v~~Lv~lL~~~~~~~~~~a~~~L~~L 520 (1028)
.+ ++.+|.+..+|. +..+.++..|..+...+-.. +... .+|+++.-+.+..-..+..++..|+.+
T Consensus 210 ~E-Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~-------~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FE-PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC-------LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAM 281 (569)
T ss_pred CC-chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh-------cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 22 566777766665 44566666666555544211 1122 345555555444556677888899988
Q ss_pred hcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHH
Q 001690 521 RLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAE 600 (1028)
Q Consensus 521 a~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~ 600 (1028)
+....-+-...-...||.|.+.|.+..+++|+.+..+|..++.--+|.. +. -.+|.|++.+..++. . ...+..
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d--I~--~~ip~Lld~l~dp~~--~-~~e~~~ 354 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD--IQ--KIIPTLLDALADPSC--Y-TPECLD 354 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH--HH--HHHHHHHHHhcCccc--c-hHHHHH
Confidence 7776666666677899999999999999999999999999987655544 33 378889988876541 1 122222
Q ss_pred HHHHHHcCCCCCcccccccchhhcccccHHHHHHH----hcCCCHHHHHHHHHHHHHhhcCC--H-HHHHHHHhhhchHH
Q 001690 601 ILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQL----IANTERETKIQFLHLLVKLCYKS--E-KVRNLIESNNDAIT 673 (1028)
Q Consensus 601 ~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~l----L~~~~~~~~~~a~~aL~~L~~~~--~-~~~~~i~~~~g~v~ 673 (1028)
.|..... + .-+..-.+..++.+ +...+..++..++.++.|+|.-- + .....+- ..+|
T Consensus 355 ---~L~~ttF---------V-~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~---~Llp 418 (569)
T KOG1242|consen 355 ---SLGATTF---------V-AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP---SLLP 418 (569)
T ss_pred ---hhcceee---------e-eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH---HHhh
Confidence 2322111 1 11122333344444 44567788899999999998744 2 2222221 3555
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 674 QLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 674 ~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
.|-.-+....|++|.-++++|+.+-+ +.++.-. .+.++.+...+....
T Consensus 419 ~lk~~~~d~~PEvR~vaarAL~~l~e-~~g~~~f------~d~~p~l~e~~~~~k 466 (569)
T KOG1242|consen 419 GLKENLDDAVPEVRAVAARALGALLE-RLGEVSF------DDLIPELSETLTSEK 466 (569)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHH-HHHhhcc------cccccHHHHhhccch
Confidence 55555666678999999999987763 2322211 244666666665544
No 131
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.31 E-value=0.004 Score=60.38 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHHhhccCccccccccHHHHHHHHhhhHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHH
Q 001690 13 AVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNII 92 (1028)
Q Consensus 13 ~~~~~l~~~l~~~~~~i~~~~~~~~~~k~~~~~l~r~i~~l~~lleel~~~~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll 92 (1028)
++++||+..+++.+..... + |..+.++...++.|.|+++||...+...+. +-..-++.|...|++++.|+
T Consensus 13 ~~~~eLlk~v~~~~~k~~~------f-k~~l~~L~sTl~~i~P~i~eI~~~~~eld~---~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 13 AVFGELLKAVIDASKKSLS------F-KSILKRLESTLESIIPIIKEIDKLNVELDR---PRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHh------h-hhHHHHHHHHHHHhhhHHHHHHHHhhhcCC---chhHHHHHHHHHHHHHHHHH
Confidence 4567777776666664422 2 556788999999999999999887655554 44889999999999999999
Q ss_pred HHhchhhhHHHHhhhhHHHHHHHHHHHHHHHHhhc-ccccc
Q 001690 93 DDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISS-FQLVN 132 (1028)
Q Consensus 93 ~~c~~~Sklyll~~~~~~~~~~~~~~~~l~~~L~~-~p~~~ 132 (1028)
+.|++.+ -|=++....+..+++++-.+|.+.++. +|...
T Consensus 83 ~k~sk~~-r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~ 122 (147)
T PF05659_consen 83 EKCSKVR-RWNLYKKPRYARKIEELEESLRRFIQVDLQLHQ 122 (147)
T ss_pred HHhcccc-HHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHH
Confidence 9999875 456668888999999999999999884 56443
No 132
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.29 E-value=0.00053 Score=60.72 Aligned_cols=87 Identities=24% Similarity=0.361 Sum_probs=70.1
Q ss_pred chhHHHhh-cCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHh
Q 001690 495 FQPFVACF-NRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLL 573 (1028)
Q Consensus 495 v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~ 573 (1028)
||.|++.| +++++.++..++.+|+.+. ...+++.|+++++++++.+|..|+.+|..+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD---------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 57899999 8999999999999999542 22469999999999999999999999998742
Q ss_pred CCCcHHHHHHHHhccCCChhHHHHHHHHHH
Q 001690 574 DPATIPLLLGLIQFVRSDPHLKHEAAEILA 603 (1028)
Q Consensus 574 ~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~ 603 (1028)
. .+++.|.+++.++.+ ..++..|..+|.
T Consensus 61 ~-~~~~~L~~~l~~~~~-~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 P-EAIPALIKLLQDDDD-EVVREAAAEALG 88 (88)
T ss_dssp H-HTHHHHHHHHTC-SS-HHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCc-HHHHHHHHhhcC
Confidence 1 589999999987543 566777877663
No 133
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.23 E-value=0.011 Score=68.99 Aligned_cols=281 Identities=15% Similarity=0.139 Sum_probs=165.2
Q ss_pred HHHHHHHhcCChhhhHHHHhhccHHHHHHHH---------h-c-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHH
Q 001690 350 ALEEMKNIMELPQYAEKAAKAGLIPKLVEFL---------K-D-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIV 418 (1028)
Q Consensus 350 al~~L~~l~~~~~~r~~i~~~g~ip~Lv~lL---------~-s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv 418 (1028)
|+..|+.+.+++.+-+.+....++..|.++- . . +..+...|+.+|+|+-..+...|..+.+.|..+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 5677888888888888887777777777755 2 2 788999999999999999988898888999999999
Q ss_pred HhhccC-------CchhHHHHHHHHhhh-chhhhhhhhcccchHHHHHHHhhc-----------------CChhhHHHHH
Q 001690 419 KQICKG-------ETMPEAIEVLSELTK-RETLGEKIGNTKDCITIMVSLLHN-----------------NNPNLSQKAH 473 (1028)
Q Consensus 419 ~~L~~~-------e~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~I~~Lv~lL~~-----------------~~~~~~~~a~ 473 (1028)
+.|+.. +..-.....|+-++. ..+.+..+....+++..++..|.. .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 334445566666643 556676776656788888776641 1234456778
Q ss_pred HHHhccccCchhHHHHHHcCCchhHHHhhc---------CCCHHHHHHHHHHHHHhh-cCcch-------HHHH----hh
Q 001690 474 DVLQNLSHNTHFAVKMAEAGYFQPFVACFN---------RGSQETRALMASALRNMR-LDESS-------IKTL----KD 532 (1028)
Q Consensus 474 ~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~---------~~~~~~~~~a~~~L~~La-~~~~~-------~~~i----~~ 532 (1028)
..++|+..+......-...+.++.++.+|. .+.......++.+|.++- ..... ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 889999765433322223345555555542 223456677778888771 11111 1111 11
Q ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCC
Q 001690 533 RQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHP 612 (1028)
Q Consensus 533 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~ 612 (1028)
...+..|+.+|...- ....... . + ..+.|++.+|..-... .+.+-..|....- +.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l--------------~~~~~~~---l-~-~~l~PlL~lL~~~~~~---~~~~Rk~lr~~lL-P~~~ 297 (446)
T PF10165_consen 241 MDVVERLLDFLDKRL--------------DKYEALK---L-D-ELLTPLLTLLTRLARA---AREVRKYLRARLL-PPDK 297 (446)
T ss_pred hHHHHHHHHHHHHHH--------------HhcCccc---c-h-hhHhhHHHHHHHHHHh---cHHHHHHHHHHhC-CChh
Confidence 223555555554110 0000000 1 1 2444444444432110 0111111211111 1111
Q ss_pred cccccccchhh-cccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 001690 613 QFELHHGLQEL-QSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS 658 (1028)
Q Consensus 613 ~~~~~~~~~~l-~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 658 (1028)
+. ...+ .....-..|+.++.+..+.++..+...|+.||..+
T Consensus 298 Dr-----~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 298 DR-----KKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hc-----ccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 10 0011 12335568999999999999999999999998665
No 134
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00017 Score=86.44 Aligned_cols=48 Identities=33% Similarity=0.827 Sum_probs=42.6
Q ss_pred CcccCcCccccccC-----ceEccCcccchHHHHHHHHhcCCCCCCCccccccc
Q 001690 259 ESLVCPLCNELMED-----PVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 259 ~~~~Cpic~~~~~d-----Pv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
.+-.|+||.|.|.. |-.++|||.|+..|+.+|++. ..+||.||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhc
Confidence 57899999999998 788999999999999999984 7789999995544
No 135
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00019 Score=78.12 Aligned_cols=47 Identities=26% Similarity=0.670 Sum_probs=40.2
Q ss_pred ccCcCcccccc--Cce-EccCcccchHHHHHHHHhcCCCCCCCccccccc
Q 001690 261 LVCPLCNELME--DPV-AIVCGHSFERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 261 ~~Cpic~~~~~--dPv-~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
+.|-||+|-+. |-+ ++||+|.|-..||..|+.+...+||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 79999999886 444 589999999999999998776789999987644
No 136
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.14 E-value=0.00016 Score=69.98 Aligned_cols=45 Identities=31% Similarity=0.748 Sum_probs=39.4
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQEL 305 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l 305 (1028)
.|.|-||.+-+..||++.|||.||..|.-+-++ ....|-+|+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhh
Confidence 499999999999999999999999999887766 456799998754
No 137
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.12 E-value=0.92 Score=55.75 Aligned_cols=502 Identities=13% Similarity=0.122 Sum_probs=271.9
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhh
Q 001690 373 IPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIG 448 (1028)
Q Consensus 373 ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~ 448 (1028)
.|.+-.+... ...+++++++.+...+......+. ..-.-+++..+..+ ..+..+......+...-.. ..+.
T Consensus 161 l~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~----~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~-~~vk 235 (759)
T KOG0211|consen 161 LPPLELLATVEETGVREKAVESLLKVAVGLPKEKL----REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD-DAVK 235 (759)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh-HHHH
Confidence 3444444444 566788899888887664422221 11123334444443 4455555555555331110 1111
Q ss_pred cccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc--Ccch
Q 001690 449 NTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRL--DESS 526 (1028)
Q Consensus 449 ~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~ 526 (1028)
...-+..-++.++.++.++..++.-+.+++..-.+ ..+..+.++.++++..+..+.++..|...+.++.. +.+.
T Consensus 236 --~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 236 --RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred --HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 12333444555677788888888888888766544 66778899999999988888899999988888743 2221
Q ss_pred HHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 001690 527 IKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMV 606 (1028)
Q Consensus 527 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~ 606 (1028)
...+ -..+.++....+++..++.......+.|+..=.. ....- --+++...++..... ..+...+.-...++
T Consensus 312 --d~~~-~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~-~~~~~~~~l~~~~~~--e~r~a~a~~~~~l~ 383 (759)
T KOG0211|consen 312 --DVVK-SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRT-QLVPPVSNLLKDEEW--EVRYAIAKKVQKLA 383 (759)
T ss_pred --hhhh-hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcc-cchhhHHHHhcchhh--hhhHHhhcchHHHh
Confidence 2222 3568899999999999888888887777544111 11111 345666666654321 21222222222222
Q ss_pred cCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhH
Q 001690 607 GGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVV 686 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v 686 (1028)
..-.. .+...+.....++.+-.++...++.++...+....++..-.+.-+. + ..-.+.++..++..++.+
T Consensus 384 ~~l~~------~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~t-i---~~llp~~~~~l~de~~~V 453 (759)
T KOG0211|consen 384 CYLNA------SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERT-I---SELLPLLIGNLKDEDPIV 453 (759)
T ss_pred hhcCc------ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcC-c---cccChhhhhhcchhhHHH
Confidence 21100 0122344445577788888888888877666666555432221000 1 234455666777788899
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHH
Q 001690 687 RRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEV 766 (1028)
Q Consensus 687 ~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~l 766 (1028)
+.+-.+.+..+-. .++-.-... .....++.++.+-... ....+.+....+.-++.... ..+.+ +.+..+
T Consensus 454 ~lnli~~ls~~~~-v~~v~g~~~--~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~----~~~~~l 522 (759)
T KOG0211|consen 454 RLNLIDKLSLLEE-VNDVIGIST--VSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFD----EKLAEL 522 (759)
T ss_pred HHhhHHHHHHHHh-ccCcccchh--hhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhh----HHHHHH
Confidence 9988876655441 111010011 2233455555443332 22333333333333322100 11111 112222
Q ss_pred HHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhccc
Q 001690 767 ICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTS 846 (1028)
Q Consensus 767 L~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~ 846 (1028)
+..-- . ...-.+.++++..+..++.....++ ..+..+|.+......++...+...+.++.-++.--.
T Consensus 523 ~~~~l--------~-d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 523 LRTWL--------P-DHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred HHhhh--------h-hhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 22100 0 0113445555555555543211222 122346666666655567788877777775553211
Q ss_pred ccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHH
Q 001690 847 VSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAE 926 (1028)
Q Consensus 847 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~ 926 (1028)
. .+....-++++.++..+++++|+-
T Consensus 590 ~-------------------------------------------------------ei~~~~Llp~~~~l~~D~vanVR~ 614 (759)
T KOG0211|consen 590 Q-------------------------------------------------------EITCEDLLPVFLDLVKDPVANVRI 614 (759)
T ss_pred c-------------------------------------------------------HHHHHHHhHHHHHhccCCchhhhh
Confidence 1 011233467888899999999999
Q ss_pred HHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhh
Q 001690 927 AALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRI 986 (1028)
Q Consensus 927 ~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~ 986 (1028)
.++..|..+..--. ....+....+.+..+....+.+++-.|.-++.-+-...-+
T Consensus 615 nvak~L~~i~~~L~------~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~ 668 (759)
T KOG0211|consen 615 NVAKHLPKILKLLD------ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLE 668 (759)
T ss_pred hHHHHHHHHHhhcc------hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 99999988863211 1233444556666666688888998888887777654433
No 138
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.061 Score=63.91 Aligned_cols=346 Identities=14% Similarity=0.145 Sum_probs=201.9
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTL 530 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i 530 (1028)
.+..|.++......|-+.++-.-..|.|-+........ +++..++.=..+.++.++..|...++.+-.. .+
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i 118 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI----LAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KI 118 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----hhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HH
Confidence 46778888888888888888888888887766543322 4566777777888998888887776655321 12
Q ss_pred hhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCC
Q 001690 531 KDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQ 610 (1028)
Q Consensus 531 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~ 610 (1028)
.+ -...+|.+.+++.++.+|..|+-...++-..+ .+ ++...|.++.|..++... ++.+..+|.++|..+.....
T Consensus 119 ~e-y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--~~-~~~~~gl~~~L~~ll~D~--~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 119 TE-YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID--PD-LVEDSGLVDALKDLLSDS--NPMVVANALAALSEIHESHP 192 (734)
T ss_pred HH-HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC--hh-hccccchhHHHHHHhcCC--CchHHHHHHHHHHHHHHhCC
Confidence 22 24689999999999999999988888875443 23 334449999999999843 35777899999999988664
Q ss_pred CCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCH-HHHHHHHhhhchHHHHHhhhcCCChhHHHH
Q 001690 611 HPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSE-KVRNLIESNNDAITQLFSSLDSDQPVVRRW 689 (1028)
Q Consensus 611 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~ 689 (1028)
+... .......+..++..+..-+.--|...+.++..-...++ +.. ..+..+...+++.++.+...
T Consensus 193 ~~~~-------~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-------~i~~r~~p~Lqh~n~avvls 258 (734)
T KOG1061|consen 193 SVNL-------LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-------DICERLTPRLQHANSAVVLS 258 (734)
T ss_pred CCCc-------ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-------HHHHHhhhhhccCCcceEee
Confidence 3111 11222344455555554444445555555554433332 222 33445667788888888888
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHH----HHhcCCC------------CChHHH--
Q 001690 690 AMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAG----IISQLPK------------DDIYVD-- 751 (1028)
Q Consensus 690 A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~----~L~nL~~------------~~~~~~-- 751 (1028)
+.+++.++...... +... .-.+.-++|+.++.+.+ +.+..|+. ++-..+. .|+.+.
T Consensus 259 avKv~l~~~~~~~~--~~~~--~~~K~~~pl~tlls~~~--e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK 332 (734)
T KOG1061|consen 259 AVKVILQLVKYLKQ--VNEL--LFKKVAPPLVTLLSSES--EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVK 332 (734)
T ss_pred hHHHHHHHHHHHHH--HHHH--HHHHhcccceeeecccc--hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhH
Confidence 88888887743332 1111 11233455666666554 22222211 2211111 111100
Q ss_pred -------HHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhh
Q 001690 752 -------EVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLS 824 (1028)
Q Consensus 752 -------~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~ 824 (1028)
..+....-++.++.=+... ....+......++.++.+++.- .+ -.++.++.|.++++
T Consensus 333 ~eKleil~~la~~~nl~qvl~El~eY---------atevD~~fvrkaIraig~~aik--~e-----~~~~cv~~lLell~ 396 (734)
T KOG1061|consen 333 LEKLEILIELANDANLAQVLAELKEY---------ATEVDVDFVRKAVRAIGRLAIK--AE-----QSNDCVSILLELLE 396 (734)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHh---------hhhhCHHHHHHHHHHhhhhhhh--hh-----hhhhhHHHHHHHHh
Confidence 1111111112222222211 1123466667777777776621 11 11577888888888
Q ss_pred cCCHHHHHHHHHHHHhhhhcccc
Q 001690 825 TGSSLAKQRAASALADLSQSTSV 847 (1028)
Q Consensus 825 s~~~~vk~~Aa~aL~~ls~~~~~ 847 (1028)
..-..+..++...+.++.+.-++
T Consensus 397 ~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 397 TKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred hcccceeeehhHHHHhhhhcCCC
Confidence 77666666777777777665444
No 139
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.07 E-value=0.0011 Score=49.06 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=36.6
Q ss_pred cchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 001690 524 ESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIA 563 (1028)
Q Consensus 524 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~ 563 (1028)
++++..+.+.|++++|+++|.++++.+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578889999999999999999999999999999999973
No 140
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.15 Score=56.62 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=164.1
Q ss_pred HHHHhcCChhhhHHHHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhccc-----H----HHHHHHHHhchhHHHHHhhc
Q 001690 353 EMKNIMELPQYAEKAAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYS-----D----IHKEAIVEAGAVRRIVKQIC 422 (1028)
Q Consensus 353 ~L~~l~~~~~~r~~i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~-----~----~~k~~i~~~g~i~~lv~~L~ 422 (1028)
.+..+++-|+--..+++.++++.|+.+|.+ |.++-...+..|..|.-.+ + ..-+.+++.+.++.+|+-+.
T Consensus 107 ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve 186 (536)
T KOG2734|consen 107 EMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE 186 (536)
T ss_pred HHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence 444455666666667888999999999999 9999999999999886433 1 12344556788888888776
Q ss_pred cC--------CchhHHHHHHHHhhh-chhhhhhhhcccchHHHHHHHhhc--CChhhHHHHHHHHhccccCc-hhHHHHH
Q 001690 423 KG--------ETMPEAIEVLSELTK-RETLGEKIGNTKDCITIMVSLLHN--NNPNLSQKAHDVLQNLSHNT-HFAVKMA 490 (1028)
Q Consensus 423 ~~--------e~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~I~~Lv~lL~~--~~~~~~~~a~~~L~nL~~~~-~n~~~i~ 490 (1028)
+- ....+....+.|+.. .+++...+.+ .|.+.-|..-+.. .-..-+..|.++|.-+-.+. +|+....
T Consensus 187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~ 265 (536)
T KOG2734|consen 187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG 265 (536)
T ss_pred HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc
Confidence 54 234556666777754 4577777777 5777776665543 23355678888888776654 4888888
Q ss_pred HcCCchhHHHhhc----CC-----CHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001690 491 EAGYFQPFVACFN----RG-----SQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTL 561 (1028)
Q Consensus 491 ~~G~v~~Lv~lL~----~~-----~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL 561 (1028)
.-.+|..+++-+. .+ ..+.-++--.+|+.+-..+.++.......++....-+++. ....+-.|+++|-.+
T Consensus 266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~a 344 (536)
T KOG2734|consen 266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHA 344 (536)
T ss_pred CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHH
Confidence 8899999998872 21 2234455556666667789999999998888777767765 445577889999888
Q ss_pred hcCC---HhHHHHHhCCCcHHHHHHHHh
Q 001690 562 IAHS---KMVKHLLLDPATIPLLLGLIQ 586 (1028)
Q Consensus 562 ~~~~---~~~~~lv~~~g~v~~L~~lL~ 586 (1028)
..++ +++.+.++. +++..+..+.-
T Consensus 345 m~g~~gt~~C~kfVe~-lGLrtiF~~FM 371 (536)
T KOG2734|consen 345 MFGPEGTPNCNKFVEI-LGLRTIFPLFM 371 (536)
T ss_pred HhCCCchHHHHHHHHH-HhHHHHHHHHh
Confidence 7664 688888888 77777766654
No 141
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.02 E-value=1.4 Score=53.62 Aligned_cols=297 Identities=14% Similarity=0.140 Sum_probs=168.7
Q ss_pred CchhHHHHHHHHh-hhc-hhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHH-HHcCCchhHHHh
Q 001690 425 ETMPEAIEVLSEL-TKR-ETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKM-AEAGYFQPFVAC 501 (1028)
Q Consensus 425 e~~~~A~~~L~~L-s~~-~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i-~~~G~v~~Lv~l 501 (1028)
++++.|+.++..+ +.. +..+.. .+.+++.|+.-|+ ++-.+..|+.++..++..+-..... +-..+++.+...
T Consensus 585 eVkeraIscmgq~i~~fgD~l~~e---L~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~f 659 (1233)
T KOG1824|consen 585 EVKERAISCMGQIIANFGDFLGNE---LPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASF 659 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHH
Confidence 7888888887766 222 222222 2467788887776 4556777888888877655322211 122367788888
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC--cchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHH
Q 001690 502 FNRGSQETRALMASALRNMRLD--ESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIP 579 (1028)
Q Consensus 502 L~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~ 579 (1028)
++.....++.....++-.|..+ ........+. ++..+-.++...+..+-+.|+..|..+.......-..+.. -+++
T Consensus 660 lrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~-~iL~ 737 (1233)
T KOG1824|consen 660 LRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISN-PILD 737 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhh-hhHH
Confidence 8766666777777666666321 1222222221 2333444555667788899999999998887665555665 7899
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHc----CCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHH---------H
Q 001690 580 LLLGLIQFVRSDPHLKHEAAEILALMVG----GCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKI---------Q 646 (1028)
Q Consensus 580 ~L~~lL~~~~~~~~l~~~a~~~L~nL~~----~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~---------~ 646 (1028)
.++.+++++. ++..|..++.++-. ... -+.+ ...++.++..+.++... .
T Consensus 738 ~ii~ll~Spl----lqg~al~~~l~~f~alV~t~~-------------~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~s 799 (1233)
T KOG1824|consen 738 EIIRLLRSPL----LQGGALSALLLFFQALVITKE-------------PDLD-YISLLSLLTAPVYEQVTDGLHKQAYYS 799 (1233)
T ss_pred HHHHHhhCcc----ccchHHHHHHHHHHHHHhcCC-------------CCcc-HHHHHHHHcCCcccccccchhHHHHHH
Confidence 9999999764 33444444444332 111 1112 66788888766543222 2
Q ss_pred HHHHHHHhhcCC-HHHHHHHHhhhchHHHHHh-hhcC-CChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHh
Q 001690 647 FLHLLVKLCYKS-EKVRNLIESNNDAITQLFS-SLDS-DQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAI 723 (1028)
Q Consensus 647 a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~-Ll~~-~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~l 723 (1028)
.+.+...|+..- ...+. ....|+. +... .+..++.-|.-.|+.+-. +-. .. ...+.-..++.-
T Consensus 800 iA~cvA~Lt~~~~~~s~s-------~a~kl~~~~~s~~s~~~ikvfa~LslGElgr-~~~--~s----~~~e~~~~iiea 865 (1233)
T KOG1824|consen 800 IAKCVAALTCACPQKSKS-------LATKLIQDLQSPKSSDSIKVFALLSLGELGR-RKD--LS----PQNELKDTIIEA 865 (1233)
T ss_pred HHHHHHHHHHhccccchh-------HHHHHHHHHhCCCCchhHHHHHHhhhhhhcc-CCC--CC----cchhhHHHHHHH
Confidence 222333332211 11111 1222433 3332 233666666666666652 211 11 112333456677
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHh
Q 001690 724 FTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICS 769 (1028)
Q Consensus 724 L~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~ 769 (1028)
+.+++. +++.+|..+|++++.++-+. .+|-++..+.+
T Consensus 866 f~sp~e-dvksAAs~ALGsl~vgnl~~--------yLpfil~qi~s 902 (1233)
T KOG1824|consen 866 FNSPSE-DVKSAASYALGSLAVGNLPK--------YLPFILEQIES 902 (1233)
T ss_pred cCCChH-HHHHHHHHHhhhhhcCchHh--------HHHHHHHHHhc
Confidence 777764 99999999999999976643 35555555553
No 142
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.97 E-value=0.0016 Score=72.33 Aligned_cols=53 Identities=28% Similarity=0.516 Sum_probs=45.0
Q ss_pred CCCCcccCcCccccccCceEccCcccchHHHHHHHHh----cCCCCCCCcccccccc
Q 001690 256 YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQ----RGGKNCPTCRQELLSL 308 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~----~~~~~CP~~~~~l~~~ 308 (1028)
+-..+..|.+|.+.-.||+...|.|+|||-||.++.. ..+.+||.|...+...
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3346789999999999999999999999999998875 2347999998887654
No 143
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00044 Score=71.70 Aligned_cols=46 Identities=22% Similarity=0.627 Sum_probs=38.3
Q ss_pred ccCcCcccccc--Cce-EccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 261 LVCPLCNELME--DPV-AIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 261 ~~Cpic~~~~~--dPv-~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
..|-||++-+. |-+ ++||.|.|.+.|+++|+..-...||+||.+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 57999998664 444 57999999999999999855678999998875
No 144
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.001 Score=80.94 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=66.5
Q ss_pred CCCCCcccCcCccccccCceEcc-CcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHHHHhh
Q 001690 255 VYPIESLVCPLCNELMEDPVAIV-CGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQRE 327 (1028)
Q Consensus 255 ~~~~~~~~Cpic~~~~~dPv~~~-cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 327 (1028)
.+.|++|.-|+...+|+|||++| +|++-||.-|++++- ...+-|.||.+|+...+.||..+|.-|+.|....
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL-s~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL-SDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHh-cCCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999998 999999999999997 5667999999999999999999999999998764
No 145
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.84 E-value=1.1 Score=51.52 Aligned_cols=241 Identities=14% Similarity=0.131 Sum_probs=122.3
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhccc
Q 001690 376 LVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTK 451 (1028)
Q Consensus 376 Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~ 451 (1028)
+.++..+ |..+|...-.++..|+.-.++.- -+...+.+-+..+ ..+-.|+..|...-. .
T Consensus 70 i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl------m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid-----------~ 132 (898)
T COG5240 70 ILKLFQHKDLYLRQCVYSAIKELSKLTEDVL------MGTSSIMKDLNGGVPDDVKPMAIRSLFSVID-----------G 132 (898)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhhcchhhh------HHHHHHHHhhccCCccccccHHHHHHHHhcC-----------c
Confidence 4456667 88888887778877777653321 1233444555555 466777777766533 2
Q ss_pred chHHHHHHHhhc----CChhhHHHHHHHHhccccCchhH-HHHHHc--CCchhHHHhh---------cCCCHHHHHHHHH
Q 001690 452 DCITIMVSLLHN----NNPNLSQKAHDVLQNLSHNTHFA-VKMAEA--GYFQPFVACF---------NRGSQETRALMAS 515 (1028)
Q Consensus 452 g~I~~Lv~lL~~----~~~~~~~~a~~~L~nL~~~~~n~-~~i~~~--G~v~~Lv~lL---------~~~~~~~~~~a~~ 515 (1028)
..++..-++|++ ..+.....|+..-++|--...+. .+.... .+|--|-+.= -++++-.|..|++
T Consensus 133 ~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalG 212 (898)
T COG5240 133 ETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALG 212 (898)
T ss_pred chhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHH
Confidence 334444444543 33444444554444544333221 111110 1222221111 1456778888988
Q ss_pred HHHHhhcCcchHHHHhhCCcHHHHHHHhcCCC-HHHHHHH---HHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCC
Q 001690 516 ALRNMRLDESSIKTLKDRQFIHNVIQMLSSNS-PVCKSAC---LKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSD 591 (1028)
Q Consensus 516 ~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A---~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~ 591 (1028)
.|+.+-.++. + +.-.|++.++++. ...+.+. +++...|-.. +-+... -..|.|-..+++.-
T Consensus 213 lLyq~kr~dk----m----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~--n~q~~~---q~rpfL~~wls~k~-- 277 (898)
T COG5240 213 LLYQSKRTDK----M----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE--NSQALL---QLRPFLNSWLSDKF-- 277 (898)
T ss_pred HHHHHhcccH----H----HHHHHHHHhhcccccccchhheehHHHHHHHHHh--ChHHHH---HHHHHHHHHhcCcc--
Confidence 8887755432 1 2335566665433 1111111 1222222111 111111 12344444444321
Q ss_pred hhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 001690 592 PHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS 658 (1028)
Q Consensus 592 ~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 658 (1028)
..+.-.++..+..++......+. -...|..|-.+|+++....+..|+++|..|+...
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~----------~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQF----------VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHH----------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 34455666667666653321111 1235777788888999999999999999998644
No 146
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0007 Score=69.64 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=40.4
Q ss_pred CcccCcCccccccCceEc-cCcccchHHHHHHHHhc-CCCCCCCcccccc
Q 001690 259 ESLVCPLCNELMEDPVAI-VCGHSFERKAIQEHFQR-GGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~-~cght~c~~ci~~~~~~-~~~~CP~~~~~l~ 306 (1028)
.+..||+|.+.-.-|.++ +|||.||..||..-+.. ...+||.|+....
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 688999999999999887 59999999999886542 3479999987654
No 147
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.81 E-value=0.0024 Score=47.20 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=33.9
Q ss_pred HHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhh
Q 001690 806 LQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLS 842 (1028)
Q Consensus 806 ~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls 842 (1028)
....+.+.|++|.|+++|+++++.+++.|+++|.|++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4566889999999999999999999999999999986
No 148
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.81 E-value=1.5 Score=50.51 Aligned_cols=453 Identities=19% Similarity=0.174 Sum_probs=215.6
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCH-HHHHHHHHHHHHhhcCcchHHHHhh
Q 001690 454 ITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQ-ETRALMASALRNMRLDESSIKTLKD 532 (1028)
Q Consensus 454 I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~i~~ 532 (1028)
.-.+.++.++.|+..+...-.++..|+.-.+.... +...+++-+..|.+ .++-.|...|... ++
T Consensus 67 ff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm-----~tssiMkD~~~g~~~~~kp~AiRsL~~V----------id 131 (898)
T COG5240 67 FFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLM-----GTSSIMKDLNGGVPDDVKPMAIRSLFSV----------ID 131 (898)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhH-----HHHHHHHhhccCCccccccHHHHHHHHh----------cC
Confidence 33455677788888888777888888765443322 12334555555555 4566666666543 23
Q ss_pred CCcHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCHh-HHHHHhCCCcHHHHHHHHhcc----------CCChhHHHH
Q 001690 533 RQFIHNVIQMLS----SNSPVCKSACLKCIKTLIAHSKM-VKHLLLDPATIPLLLGLIQFV----------RSDPHLKHE 597 (1028)
Q Consensus 533 ~g~i~~Lv~lL~----s~~~~~~~~A~~aL~nL~~~~~~-~~~lv~~~g~v~~L~~lL~~~----------~~~~~l~~~ 597 (1028)
...++..=++|. +.++..+..|+-.-+.|--...+ ..+... ..-.+...+-+.+ +..+..+.+
T Consensus 132 ~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~n--e~qeav~~l~q~p~~~~n~gy~Pn~~~isqYH 209 (898)
T COG5240 132 GETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLN--ETQEAVLDLKQFPNQHGNEGYEPNGNPISQYH 209 (898)
T ss_pred cchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHH--HHHHHHhhHhhCcCccCCcccCCCCChHHHHH
Confidence 333333333443 44555666665555555333222 222221 1222222222211 112445677
Q ss_pred HHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHH-----HHHHHHHHhhcCCHHHHHHHHhhhchH
Q 001690 598 AAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKI-----QFLHLLVKLCYKSEKVRNLIESNNDAI 672 (1028)
Q Consensus 598 a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~-----~a~~aL~~L~~~~~~~~~~i~~~~g~v 672 (1028)
|...|..+-+.+. -+.-.++.++.... .++. ...++...+...++..+..+ .
T Consensus 210 alGlLyq~kr~dk----------------ma~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~------r 266 (898)
T COG5240 210 ALGLLYQSKRTDK----------------MAQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQL------R 266 (898)
T ss_pred HHHHHHHHhcccH----------------HHHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHHHH------H
Confidence 7777776655321 13345555555433 2222 23334444443333332222 2
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHH
Q 001690 673 TQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDE 752 (1028)
Q Consensus 673 ~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 752 (1028)
|.|-..+.+.-+-+...++++++.++... +... .-...+..|-.+|.+... ..+..|+.+|..|+...++. -
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~--~~~~~vs~L~~fL~s~rv-~~rFsA~Riln~lam~~P~k-v 338 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQ--FVDQTVSSLRTFLKSTRV-VLRFSAMRILNQLAMKYPQK-V 338 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHH--HHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHhhCCce-e
Confidence 33444566666788888999999888322 1111 112345556666666654 77889999999987643321 0
Q ss_pred HHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHH
Q 001690 753 VLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQ 832 (1028)
Q Consensus 753 ~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~ 832 (1028)
.++. +-+-.|+.+. +..+--.++..|. .+++.+....+. +.||.++.=+ +..-|.
T Consensus 339 ~vcN----~evEsLIsd~-------------Nr~IstyAITtLL---KTGt~e~idrLv--~~I~sfvhD~---SD~FKi 393 (898)
T COG5240 339 SVCN----KEVESLISDE-------------NRTISTYAITTLL---KTGTEETIDRLV--NLIPSFVHDM---SDGFKI 393 (898)
T ss_pred eecC----hhHHHHhhcc-------------cccchHHHHHHHH---HcCchhhHHHHH--HHHHHHHHhh---ccCceE
Confidence 0010 1122233321 0111111222222 223333322222 2234333322 333333
Q ss_pred HHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchh
Q 001690 833 RAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKP 912 (1028)
Q Consensus 833 ~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~ 912 (1028)
-+.-|+..|+..-+. + ...++.+|...+. - .+|. -| +.-+|..
T Consensus 394 I~ida~rsLsl~Fp~------------k----~~s~l~FL~~~L~-~------------eGg~-----eF---K~~~Vda 436 (898)
T COG5240 394 IAIDALRSLSLLFPS------------K----KLSYLDFLGSSLL-Q------------EGGL-----EF---KKYMVDA 436 (898)
T ss_pred EeHHHHHHHHhhCcH------------H----HHHHHHHHHHHHH-h------------cccc-----hH---HHHHHHH
Confidence 344444444432111 0 0122333333210 0 0000 01 0112334
Q ss_pred HHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhcc-----------chHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001690 913 LVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQ-----------GVLAILQVLEKGSLSAKTKALDLFQMIQ 981 (1028)
Q Consensus 913 Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~-----------~i~~l~~ll~~~~~~~~~~A~~~l~~~~ 981 (1028)
+.+..+ .+++-+|.|++.|+++..|.+..+-.++.+.=.| =|..+.+=+--+|.-+|..|..+|.++.
T Consensus 437 isd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ 515 (898)
T COG5240 437 ISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFA 515 (898)
T ss_pred HHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444443 3778899999999999988775443333222111 1223333333455666667777776665
Q ss_pred hhhhhhhhhhccc-chHHHhhccc--cchHHHHHHHHHHhc
Q 001690 982 KHTRITDTLLQRS-ERILIQLLDD--DALKKKVALVLMQMN 1019 (1028)
Q Consensus 982 ~~~~~~~~~~~~~-~~~Lv~~l~~--~~~~~~aa~~L~~l~ 1019 (1028)
...+ +.+.... ...|-.-+.+ ..+|..|+-.|+.|.
T Consensus 516 ln~~--d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 516 LNIS--DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCcc--ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 4322 2222222 2356666666 888888988888775
No 149
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00083 Score=71.49 Aligned_cols=47 Identities=23% Similarity=0.740 Sum_probs=40.0
Q ss_pred CcccCcCccccc-cC------------ceEccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNELM-ED------------PVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~~-~d------------Pv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
++-.|-||++-| .. |-.+||||.+.-.|+..|.+ +.-+||.||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 688999999864 33 36799999999999999998 5678999999853
No 150
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0019 Score=73.40 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCcccCcCccccccCceEcc-CcccchHHHHHHHHhcCCCCCCCcccc
Q 001690 226 LQLTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIV-CGHSFERKAIQEHFQRGGKNCPTCRQE 304 (1028)
Q Consensus 226 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Cpic~~~~~dPv~~~-cght~c~~ci~~~~~~~~~~CP~~~~~ 304 (1028)
.+++.+..+..+.+.....+..+.+ ..+++|++|..|....+|+|||++| +|-+.+|+-|.-++- ...+.|.-|.|
T Consensus 822 ~~IE~l~~f~nr~E~~r~~ea~EeE--D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahll-sd~tDPFNRmP 898 (929)
T COG5113 822 SQIEELRSFINRLEKVRVIEAVEEE--DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLL-SDGTDPFNRMP 898 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHh-cCCCCccccCC
Confidence 4567777776666543211111111 1367889999999999999999985 889999999999987 56789999999
Q ss_pred ccccCCcCccchhhhHHHHHHh
Q 001690 305 LLSLDLMPNLSLRSSIEEWKQR 326 (1028)
Q Consensus 305 l~~~~l~~n~~l~~~i~~~~~~ 326 (1028)
++..+++||..|+.-|..|...
T Consensus 899 LtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 899 LTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred CchhhcCCCHHHHHHHHHHHhc
Confidence 9999999999999999888654
No 151
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.015 Score=67.24 Aligned_cols=267 Identities=15% Similarity=0.124 Sum_probs=157.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCC
Q 001690 628 NVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPL 707 (1028)
Q Consensus 628 ~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~ 707 (1028)
+...|..+....++.++.+|+.+|..|.....- - .-.....+.++..++..||..|+++++...+-++...-.
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~------~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL-S------KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccc-c------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 444466666777888999999999988753311 1 123455778888899999999999988877433221111
Q ss_pred C--CCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchh
Q 001690 708 P--PSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDA 785 (1028)
Q Consensus 708 ~--~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~ 785 (1028)
+ ..+....+...+-..+.+.+ ..++..|+.+|+.+..-+.++-....+..+.. -++.-++ . ..+...
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~s-l~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRRkr~---a---hkrpk~ 340 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRS-LSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRRKRT---A---HKRPKA 340 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCc-eeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhhhhh---c---ccchHH
Confidence 1 10111233444555555544 36777788888776554444433333332222 1211000 0 000000
Q ss_pred hHHHH--HHHHHHHhcCC---CChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhccccccccccccccccc
Q 001690 786 SLLEI--ALAALLHFTDP---TKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTK 860 (1028)
Q Consensus 786 ~~~e~--~~~aL~~l~~~---~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~ 860 (1028)
.+..+ ..|-=++--.| .|.+ -..++.+|.--.||.-|++.=.+|++.|..+++.|+.+++. +-
T Consensus 341 l~s~GewSsGk~~~advpsee~d~~-~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~------FA----- 408 (823)
T KOG2259|consen 341 LYSSGEWSSGKEWNADVPSEEDDEE-EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG------FA----- 408 (823)
T ss_pred HHhcCCcccCccccccCchhhcccc-ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC------cH-----
Confidence 00000 00000000001 1111 11256777778888888877778999999999999977655 11
Q ss_pred ccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhccc
Q 001690 861 TLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHS 940 (1028)
Q Consensus 861 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~ 940 (1028)
..++.-||+++++....|+..|..+|..|...-.
T Consensus 409 ----------------------------------------------~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~ 442 (823)
T KOG2259|consen 409 ----------------------------------------------VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA 442 (823)
T ss_pred ----------------------------------------------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe
Confidence 2246789999999999999999999988874311
Q ss_pred chhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHH
Q 001690 941 TLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQM 979 (1028)
Q Consensus 941 ~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~ 979 (1028)
| +..-++.+...+...++++|+....+|.+
T Consensus 443 --------i-~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 443 --------I-REEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred --------e-cHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 1 22445667778888888888877776554
No 152
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.62 E-value=0.032 Score=59.26 Aligned_cols=176 Identities=18% Similarity=0.230 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHHhccc--HHHHHHHHH--hchhHHHHHhhccC--CchhHHHHHHHHhhhchhhh-hhhhcccchHH
Q 001690 383 TRLSTEAILKCLYFLAKYS--DIHKEAIVE--AGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLG-EKIGNTKDCIT 455 (1028)
Q Consensus 383 ~~~~~~~A~~~L~~Ls~~~--~~~k~~i~~--~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~-~~i~~~~g~I~ 455 (1028)
+-..|..|+..|..+..+. ......+.. ...+..++..+.+. .....|+.++..++..-... .... ...+|
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~--~~~l~ 97 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA--DILLP 97 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH--HHHHH
Confidence 7778888888888887655 222333322 23344555555554 66788888888886632222 1122 46899
Q ss_pred HHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh-cCcchHHHHhh--
Q 001690 456 IMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR-LDESSIKTLKD-- 532 (1028)
Q Consensus 456 ~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~-- 532 (1028)
.|+..+.++...++..|..+|..+..+-.....+ .++.+...+.+.++.++..++..|..+. ..+.....+..
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 9999999988899999999999887664411222 1445666678999999999999988873 33311111211
Q ss_pred --CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 001690 533 --RQFIHNVIQMLSSNSPVCKSACLKCIKTLIAH 564 (1028)
Q Consensus 533 --~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~ 564 (1028)
...++.+...+.++++++|+.|-.+++.+...
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 23678888899999999999999999999655
No 153
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.049 Score=61.60 Aligned_cols=194 Identities=7% Similarity=0.039 Sum_probs=135.3
Q ss_pred HHHHHHhccccCch-hHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHHHhcCCCH
Q 001690 471 KAHDVLQNLSHNTH-FAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR-LDESSIKTLKDRQFIHNVIQMLSSNSP 548 (1028)
Q Consensus 471 ~a~~~L~nL~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~s~~~ 548 (1028)
.++.+|..++..-. -+.-+.++.++++|+++|+.++..+..-+...+.|+. ..+.-+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 44455555554422 3444557788999999998877666777778888874 455567778899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHhH--HHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhccc
Q 001690 549 VCKSACLKCIKTLIAHSKMV--KHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSE 626 (1028)
Q Consensus 549 ~~~~~A~~aL~nL~~~~~~~--~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~ 626 (1028)
..|.+..|+|..+..+.++. -+.+.. -++..++++...+. -.++..+..+|.|+...+.-.+...+-..+..-..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lak-ig~~kvl~~~NDpc--~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAK-IGVEKVLSYTNDPC--FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHh-cCHHHHHHHhcCcc--cccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 99999999999997765333 334444 68899999987654 47789999999999874332111000001112222
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHh
Q 001690 627 HNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIES 667 (1028)
Q Consensus 627 g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~ 667 (1028)
.....|++.++..+|-.-...+..|.+++..+++.+..+.+
T Consensus 565 ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 565 YLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 35567777788888876666788888888877666666554
No 154
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=1.7 Score=48.75 Aligned_cols=232 Identities=13% Similarity=0.181 Sum_probs=155.9
Q ss_pred HHHHhcccHHHHHHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhch----------hhhhhhhcccchHHHHHHHh
Q 001690 394 LYFLAKYSDIHKEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRE----------TLGEKIGNTKDCITIMVSLL 461 (1028)
Q Consensus 394 L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~----------~~~~~i~~~~g~I~~Lv~lL 461 (1028)
+.-++..+ +.=..+++.++++.++++|... +..-..+..|.+|+..+ ..-..+.+ .+.++.||+-+
T Consensus 108 mhvlAt~P-dLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqnv 185 (536)
T KOG2734|consen 108 MHVLATMP-DLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQNV 185 (536)
T ss_pred HHhhhcCh-HHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHHH
Confidence 34445554 4445666778888888888777 66666677777776421 22333444 57888888887
Q ss_pred hcCC------hhhHHHHHHHHhccccC-chhHHHHHHcCCchhHHHhhcC--CCHHHHHHHHHHHHHhh-cCcchHHHHh
Q 001690 462 HNNN------PNLSQKAHDVLQNLSHN-THFAVKMAEAGYFQPFVACFNR--GSQETRALMASALRNMR-LDESSIKTLK 531 (1028)
Q Consensus 462 ~~~~------~~~~~~a~~~L~nL~~~-~~n~~~i~~~G~v~~Lv~lL~~--~~~~~~~~a~~~L~~La-~~~~~~~~i~ 531 (1028)
..-| .....++...+-|+... +..+..+++.|.+..|+..+.. .-..-+..|..+|+.+- ...+++....
T Consensus 186 eRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~ 265 (536)
T KOG2734|consen 186 ERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG 265 (536)
T ss_pred HHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc
Confidence 6322 34556777788887654 5678888899998888886632 33446677888888884 4556888999
Q ss_pred hCCcHHHHHHHhc---CCC------HHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHH
Q 001690 532 DRQFIHNVIQMLS---SNS------PVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEIL 602 (1028)
Q Consensus 532 ~~g~i~~Lv~lL~---s~~------~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L 602 (1028)
.-.+|..|++-+. ..+ .+.-++-..+|+.+-..+.++.+.+.. .++....-+++.. ...+..+..+|
T Consensus 266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlqLm~Lmlr~K---k~sr~SalkvL 341 (536)
T KOG2734|consen 266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQLMNLMLREK---KVSRGSALKVL 341 (536)
T ss_pred CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHHHHHHHHHHH---HHhhhhHHHHH
Confidence 9899999988664 222 344677788888888889999999998 6666666555542 24456667777
Q ss_pred HHHHcCCCCCcccccccchhhcccccHHHHHHHh
Q 001690 603 ALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLI 636 (1028)
Q Consensus 603 ~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL 636 (1028)
-....++.... ++..+.+-++...++.+.
T Consensus 342 d~am~g~~gt~-----~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 342 DHAMFGPEGTP-----NCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHhCCCchH-----HHHHHHHHHhHHHHHHHH
Confidence 77776654333 245566666666655554
No 155
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.44 E-value=0.0014 Score=71.98 Aligned_cols=47 Identities=32% Similarity=0.723 Sum_probs=39.1
Q ss_pred CCCcccCcCccccccCce----EccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 257 PIESLVCPLCNELMEDPV----AIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv----~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
+-+--+||+|++-|.+-+ ++.|.|+|-..|+.+|+. .+||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 345678999999998776 368999999999999965 57999987655
No 156
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.43 E-value=0.45 Score=55.52 Aligned_cols=370 Identities=15% Similarity=0.139 Sum_probs=194.2
Q ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCC
Q 001690 536 IHNVIQMLSSNSP---VCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHP 612 (1028)
Q Consensus 536 i~~Lv~lL~s~~~---~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~ 612 (1028)
+|.|+..|.+.+. ...+..+.+|..+|.+++....++. ..+..|-.....+. ....-..+..+|..+.......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~--~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI--RLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH--HHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccc
Confidence 4677888875443 6788999999999999876665554 34555544444332 2333345555566665533222
Q ss_pred cccccccchhhcccccHHHHHHHhcCC-----C--HHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHHHHH--------
Q 001690 613 QFELHHGLQELQSEHNVNVFLQLIANT-----E--RETKIQFLHLLVKLCYKS-EKVRNLIESNNDAITQLF-------- 676 (1028)
Q Consensus 613 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~-----~--~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv-------- 676 (1028)
. .............++.++.+.... + +.+...+.+++..+...- .+-+..+.+ .....+.
T Consensus 78 ~--~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~--~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 78 K--QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD--ELYSLFLSPKSFSPF 153 (415)
T ss_pred c--ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHccccccCCC
Confidence 2 000123344445788888876522 1 334444444444443322 222222221 2222222
Q ss_pred hhhcC----CChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCC--ChHH
Q 001690 677 SSLDS----DQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKD--DIYV 750 (1028)
Q Consensus 677 ~Ll~~----~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~--~~~~ 750 (1028)
..-.. .......-...+++.+..+. .+. .....+..++.+..+.++...+..++.+++.+... +.+
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~---~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~- 225 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDV---SLP----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD- 225 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCccc---Ccc----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-
Confidence 00001 11122222334555554211 111 11246777888877776667777777766655432 111
Q ss_pred HHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHH
Q 001690 751 DEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLA 830 (1028)
Q Consensus 751 ~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~v 830 (1028)
.+..++..+...- .............+-.+|....+..-+++... ..+..|+++|.+ +.+
T Consensus 226 --------~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--~~~ 285 (415)
T PF12460_consen 226 --------DLDEFLDSLLQSI----SSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--PEL 285 (415)
T ss_pred --------hHHHHHHHHHhhh----cccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--hhh
Confidence 2222222222110 00011122334444444444444322333332 234557777766 778
Q ss_pred HHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcc
Q 001690 831 KQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAV 910 (1028)
Q Consensus 831 k~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai 910 (1028)
...||.++.-+...... +-.+ .-+..+|+|.+ +.|+ ...+
T Consensus 286 g~~aA~~f~il~~d~~~------~l~~------~~~a~vklLyk-------------------------QR~F---~~~~ 325 (415)
T PF12460_consen 286 GQQAAKAFGILLSDSDD------VLNK------ENHANVKLLYK-------------------------QRFF---TQVL 325 (415)
T ss_pred HHHHHHHHhhHhcCcHH------hcCc------cccchhhhHHh-------------------------HHHH---HHHH
Confidence 88999999988765333 1100 00012222221 1111 2357
Q ss_pred hhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhc-cchHHHHHHHhcCChhHHHHHHHHHHHHHhhh
Q 001690 911 KPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDS-QGVLAILQVLEKGSLSAKTKALDLFQMIQKHT 984 (1028)
Q Consensus 911 ~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~-~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~ 984 (1028)
++|++-.++.+.+.+...+.||+.++..- ...+ .+.+. .-+|.+++-+..+|..++..++..|..+....
T Consensus 326 p~L~~~~~~~~~~~k~~yL~ALs~ll~~v---P~~v-l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 326 PKLLEGFKEADDEIKSNYLTALSHLLKNV---PKSV-LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHhhC---CHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 89999999888889999999999999532 2222 22222 36677778888899999999999999998655
No 157
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.43 E-value=0.022 Score=60.56 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=110.9
Q ss_pred cCCCHHHHHHHHHHHHHhhc-C--cchHHHHhh--CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HhHHHHHhCCC
Q 001690 503 NRGSQETRALMASALRNMRL-D--ESSIKTLKD--RQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHS-KMVKHLLLDPA 576 (1028)
Q Consensus 503 ~~~~~~~~~~a~~~L~~La~-~--~~~~~~i~~--~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~-~~~~~lv~~~g 576 (1028)
.+.+-+.+..++.-|..+.. + .+....+.+ ...+..++..+.+....+...|+.++..|+..- ..-...+. .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~--~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD--I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH--H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH--H
Confidence 56677888888888888843 2 233333332 145567777777777778899999999987653 22333444 4
Q ss_pred cHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhccccc-HHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 001690 577 TIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHN-VNVFLQLIANTERETKIQFLHLLVKLC 655 (1028)
Q Consensus 577 ~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~-v~~Lv~lL~~~~~~~~~~a~~aL~~L~ 655 (1028)
.+|.|++.+.++. ..+++.|..+|..++...... ... .+.+...+.+.+|.++..++..+..+.
T Consensus 95 ~l~~Ll~~~~~~~--~~i~~~a~~~L~~i~~~~~~~-------------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 95 LLPPLLKKLGDSK--KFIREAANNALDAIIESCSYS-------------PKILLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H---------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc--HHHHHHHHHHHHHHHHHCCcH-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 8899999887654 578899999999999854300 123 566777788999999999999888876
Q ss_pred cCCHHHHHHHHh---hhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 656 YKSEKVRNLIES---NNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 656 ~~~~~~~~~i~~---~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
...+.....+.. -...++.+..++.+.++++|..|..++..+.
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 544311111111 0246778888999999999999999999886
No 158
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.40 E-value=0.0053 Score=48.88 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001690 507 QETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTL 561 (1028)
Q Consensus 507 ~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL 561 (1028)
+.+|..|+++|++++........-....+++.|+.+|.++++.+|.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999976554444445566899999999999999999999999875
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.041 Score=66.75 Aligned_cols=229 Identities=17% Similarity=0.119 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHH
Q 001690 686 VRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHE 765 (1028)
Q Consensus 686 v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~ 765 (1028)
.|..|..+|..+-+-+ -++-.+....|..|-.+++|.++.. +.+---+.+.+.+..-|+..+.-+++.++-..++.
T Consensus 486 HRlRAL~LL~RFLDlG---pWAV~LaLsVGIFPYVLKLLQS~a~-ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~ 561 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLG---PWAVDLALSVGIFPYVLKLLQSSAR-ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQ 561 (1387)
T ss_pred HHHHHHHHHHHHhccc---hhhhhhhhccchHHHHHHHhccchH-hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEE
Confidence 4666677777766322 2333333456888999999998875 67766777777877778888888999999988888
Q ss_pred HHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcC-CHHHHHHHHHHHHhhhhc
Q 001690 766 VICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTG-SSLAKQRAASALADLSQS 844 (1028)
Q Consensus 766 lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-~~~vk~~Aa~aL~~ls~~ 844 (1028)
.|... . ....+-..-++-+|+.++.. -+.-|+...+.+.|.+=...|.++ .+..+.-.+.+|+.|=.+
T Consensus 562 vL~~~------~----~~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 562 VLDPS------Q----AIPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred EecCc------C----CCCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 88741 1 11223334456666667653 566677888899999888889886 688999999999887543
Q ss_pred ccccccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccH
Q 001690 845 TSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGV 924 (1028)
Q Consensus 845 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v 924 (1028)
-.. .- ++=++.+|.+.|+.+|.++-++|
T Consensus 631 ~~~---------------------------Ar-------------------------w~G~r~~AhekL~~~LsD~vpEV 658 (1387)
T KOG1517|consen 631 YDE---------------------------AR-------------------------WSGRRDNAHEKLILLLSDPVPEV 658 (1387)
T ss_pred cch---------------------------hh-------------------------hccccccHHHHHHHHhcCccHHH
Confidence 221 11 12235788999999999999999
Q ss_pred HHHHHHHHHHhhhcccc-hhhHHHHH------------Hhc---cchHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001690 925 AEAALTALETLLADHST-LSHAIAVI------------VDS---QGVLAILQVLEKGSLSAKTKALDLFQMIQ 981 (1028)
Q Consensus 925 ~~~A~~aL~~L~~d~~~-~~~~~~~i------------~~~---~~i~~l~~ll~~~~~~~~~~A~~~l~~~~ 981 (1028)
|.+|+.||++|+....+ .++....+ .|. .|...++.++..+++-++....-+|.++.
T Consensus 659 RaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 659 RAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999975311 11111111 111 12246777788888888887777777765
No 160
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.37 E-value=0.19 Score=55.79 Aligned_cols=192 Identities=15% Similarity=0.145 Sum_probs=117.7
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhh--CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CHhHHHH
Q 001690 497 PFVACFNRGSQETRALMASALRNMRLDESSIKTLKD--RQFIHNVIQMLSSNSPVCKSACLKCIKTLIAH---SKMVKHL 571 (1028)
Q Consensus 497 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~---~~~~~~l 571 (1028)
-.+..+.+.+...|..+...+.++-...-....+.+ .-.+..+.+.++.|+.+-+..|+.++.-++.. ......+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 345555666777888888888777432222233322 33577788888888877777888888777654 3667777
Q ss_pred HhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCC-CCCcccccccchhhcccccHHHHHHHhc----------CCC
Q 001690 572 LLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGC-QHPQFELHHGLQELQSEHNVNVFLQLIA----------NTE 640 (1028)
Q Consensus 572 v~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~-~~~~~~~~~~~~~l~~~g~v~~Lv~lL~----------~~~ 640 (1028)
++. ..|.|...+..++.....+..+..+|+-++.-. .+.+.. ...|.....+..+. .++ .++
T Consensus 127 ~~~--~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~----~~~~~~le~if~~~-~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 127 FEE--LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEET----EELMESLESIFLLS-ILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHH--HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHH----HHHHHHHHHHHHHH-hcCcCCCcccccCCCc
Confidence 774 899999999977654555556665666665421 111110 00001111111111 111 123
Q ss_pred HHHHHHHHHHHHHhhcCCH--HHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 641 RETKIQFLHLLVKLCYKSE--KVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 641 ~~~~~~a~~aL~~L~~~~~--~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
+.+...|+.+-.-|.+.-+ .+...+ ...++.|..+|.+++.+||.+|..+|..|-
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~---~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLL---EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5677777776555554332 244333 368999999999999999999999888775
No 161
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.36 E-value=0.17 Score=53.83 Aligned_cols=238 Identities=13% Similarity=0.113 Sum_probs=152.7
Q ss_pred HHhhcCChhhHHHHHHHHhccccCchhHHHH-HHcCCchhHHHhhcC--CCHHHHHHHHHHHHHhhcCcchHHHHhh-CC
Q 001690 459 SLLHNNNPNLSQKAHDVLQNLSHNTHFAVKM-AEAGYFQPFVACFNR--GSQETRALMASALRNMRLDESSIKTLKD-RQ 534 (1028)
Q Consensus 459 ~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i-~~~G~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~i~~-~g 534 (1028)
+++++-++-.+.-|+.+|.++....+.+..+ ++...-..++..+++ |...+|..++-+++.+..+++..+.|-+ ..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444445556778899999998887766555 355555667888743 5678999999999999888877654433 45
Q ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcC-C-HhHHHHHhCCCcHHHHHHHHhc-cCCChhHHHHHHHHHHHHHc---
Q 001690 535 FIHNVIQMLSSN-SPVCKSACLKCIKTLIAH-S-KMVKHLLLDPATIPLLLGLIQF-VRSDPHLKHEAAEILALMVG--- 607 (1028)
Q Consensus 535 ~i~~Lv~lL~s~-~~~~~~~A~~aL~nL~~~-~-~~~~~lv~~~g~v~~L~~lL~~-~~~~~~l~~~a~~~L~nL~~--- 607 (1028)
.|.-|+++.++. ..++-+.+++++.|++.. + .....+... |-+.+-++.|.. .-++..++.....+=..|..
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-NDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhh-cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 678888888754 366788899999999873 2 344455555 544444454443 33333333222221111111
Q ss_pred -------------------CCCCCc-ccccccchhhcccc--cHHHHHHHhcCCCHH-HHHHHHHHHHHhhcCCHHHHHH
Q 001690 608 -------------------GCQHPQ-FELHHGLQELQSEH--NVNVFLQLIANTERE-TKIQFLHLLVKLCYKSEKVRNL 664 (1028)
Q Consensus 608 -------------------~~~~~~-~~~~~~~~~l~~~g--~v~~Lv~lL~~~~~~-~~~~a~~aL~~L~~~~~~~~~~ 664 (1028)
++.+.+ ..-.++...+...+ .+..|.+++.+..|. +..-|+.=+..+....++.+..
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~v 394 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAV 394 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHH
Confidence 111111 00112233333332 577888899887776 3344555555666666778888
Q ss_pred HHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 665 IESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 665 i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
+.. -|+-..++.|+.+++++++-.|..++..+.
T Consensus 395 l~K-yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSK-YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHH-hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 888 899999999999999999999999987664
No 162
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=1.9 Score=50.97 Aligned_cols=340 Identities=14% Similarity=0.132 Sum_probs=175.5
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC----CchhHHHHHHHHhhh-chhhhhhhhc
Q 001690 376 LVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG----ETMPEAIEVLSELTK-RETLGEKIGN 449 (1028)
Q Consensus 376 Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~----e~~~~A~~~L~~Ls~-~~~~~~~i~~ 449 (1028)
+.+=|.+ |+.....|+.++.|+...+ +++.+ ...|+ ++|.++ -+++.|+-+|..|-+ +++ .+ .
T Consensus 116 iknDL~srn~~fv~LAL~~I~niG~re--~~ea~--~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~-~ 184 (938)
T KOG1077|consen 116 IKNDLSSRNPTFVCLALHCIANIGSRE--MAEAF--ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LV-N 184 (938)
T ss_pred HHhhhhcCCcHHHHHHHHHHHhhccHh--HHHHh--hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---cc-C
Confidence 4444445 7777777888888776543 33333 23333 556555 456666666666533 222 12 2
Q ss_pred ccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhh-----------------cCCCHHHHHH
Q 001690 450 TKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF-----------------NRGSQETRAL 512 (1028)
Q Consensus 450 ~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL-----------------~~~~~~~~~~ 512 (1028)
..+.+..++.+|.+.+..+...+...+--|+.....-. .+++++-+..| .-+.|=++..
T Consensus 185 ~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 185 PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH----hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 14677788888887776666666666666654432100 01222222221 1234556666
Q ss_pred HHHHHHHhh--cCcchHHHHhhCCcHHHHHHHhcCC--CHHH-HHHHHHH----HHHHhcCCHhHHHHHhCCCcHHHHHH
Q 001690 513 MASALRNMR--LDESSIKTLKDRQFIHNVIQMLSSN--SPVC-KSACLKC----IKTLIAHSKMVKHLLLDPATIPLLLG 583 (1028)
Q Consensus 513 a~~~L~~La--~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~-~~~A~~a----L~nL~~~~~~~~~lv~~~g~v~~L~~ 583 (1028)
.+.+|.+.- .++..+..+.+ +...++...+.+ +..+ +.+|-.| .-+|+.+-+.-..++. .++..|-.
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~ 336 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQ 336 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHH
Confidence 666666662 23344444432 223333333211 1111 2222222 2344444322223333 26778888
Q ss_pred HHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHH
Q 001690 584 LIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEKVR 662 (1028)
Q Consensus 584 lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~ 662 (1028)
+|.+.. ..++.-|...++.|+.+....+. +... ...++..|+ ..+..++..++..|+.+|..+ ++.
T Consensus 337 fls~rE--~NiRYLaLEsm~~L~ss~~s~da--------vK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak 403 (938)
T KOG1077|consen 337 FLSHRE--TNIRYLALESMCKLASSEFSIDA--------VKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAK 403 (938)
T ss_pred Hhhccc--ccchhhhHHHHHHHHhccchHHH--------HHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHH
Confidence 888665 46778888888999886543221 1111 455667777 678889999999999999654 333
Q ss_pred HHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCC-CCCCC-----------CCCCCCCcccHHHHHHhccCCCCH
Q 001690 663 NLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGN-PNGVP-----------LPPSPGKETAINTVAAIFTCSPDV 730 (1028)
Q Consensus 663 ~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~-~~~~i-----------~~~~~~~~~~i~~Lv~lL~~~~~~ 730 (1028)
.++. -|++.|.+.+..+|+.-+-=.+.|++.. .+-.+ +..+ .+++.+-.++++..+.++
T Consensus 404 ~IV~-------elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~-vsdeVW~RvvQiVvNned- 474 (938)
T KOG1077|consen 404 QIVA-------ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDY-VSDEVWYRVVQIVVNNED- 474 (938)
T ss_pred HHHH-------HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccc-ccHHHHHHhheeEecchh-
Confidence 3332 3666666677666665443333333211 00000 0111 345667777777766543
Q ss_pred HHH-HHHHHHHhcCCCCChHHHHHHHhccc
Q 001690 731 EER-SLAAGIISQLPKDDIYVDEVLCKSEA 759 (1028)
Q Consensus 731 ~~~-~~a~~~L~nL~~~~~~~~~~l~~~g~ 759 (1028)
.+ .+|-.+...|. .+...+.+++.|+
T Consensus 475 -lq~yaak~~fe~Lq--~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 475 -LQGYAAKRLFEYLQ--KPACHENMVKVGG 501 (938)
T ss_pred -hhHHHHHHHHHHHh--hhHHHHHHHHhhh
Confidence 33 23333333222 2334455555554
No 163
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=3 Score=51.90 Aligned_cols=346 Identities=15% Similarity=0.108 Sum_probs=173.6
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCC-HHHHHHHHHHHHHhhcCcchHHH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGS-QETRALMASALRNMRLDESSIKT 529 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~ 529 (1028)
.+.|..|...|++.|..++..|+.-+..+....+ ..+++. +|...+.++...+ +..-..++-+|+.|+.-.--...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3788888888899999999999999998876654 233322 4555566554333 33344566677777532111111
Q ss_pred HhhCCcHHHHHHHhc--------CCCHHHHHHHHHHHHHHhcCC--HhHHHHHhCCCcHHH-HHHHHhccCCChhHHHHH
Q 001690 530 LKDRQFIHNVIQMLS--------SNSPVCKSACLKCIKTLIAHS--KMVKHLLLDPATIPL-LLGLIQFVRSDPHLKHEA 598 (1028)
Q Consensus 530 i~~~g~i~~Lv~lL~--------s~~~~~~~~A~~aL~nL~~~~--~~~~~lv~~~g~v~~-L~~lL~~~~~~~~l~~~a 598 (1028)
.. ..++|.+++-|. +....+|..|+.++|.++... ...+-++.. ..+. |+..+.. .+...++.|
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~--L~s~LL~~AlFD--revncRRAA 491 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS--LASALLIVALFD--REVNCRRAA 491 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH--HHHHHHHHHhcC--chhhHhHHH
Confidence 11 124555555553 233568999999999997653 222222221 2222 2222332 235678888
Q ss_pred HHHHHHHHcCCCCC-cccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHH-HhhcCCHHHHHHHHhhhchHHHHH
Q 001690 599 AEILALMVGGCQHP-QFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLV-KLCYKSEKVRNLIESNNDAITQLF 676 (1028)
Q Consensus 599 ~~~L~nL~~~~~~~-~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~-~L~~~~~~~~~~i~~~~g~v~~Lv 676 (1028)
+++|....+...+. .+ . .|+.....-+-..+.++-..+. .++..+.- + ...+..|+
T Consensus 492 sAAlqE~VGR~~n~p~G-----i----------~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y-~------~~~f~~L~ 549 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPHG-----I----------SLISTIDYFSVTNRSNCYLDLCVSIAEFSGY-R------EPVFNHLL 549 (1133)
T ss_pred HHHHHHHhccCCCCCCc-----h----------hhhhhcchhhhhhhhhHHHHHhHHHHhhhhH-H------HHHHHHHH
Confidence 88888887643222 22 1 1111222111222333222221 12222211 1 12333344
Q ss_pred hh-hcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHH----HHHHHHHhcCCCCChHHH
Q 001690 677 SS-LDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEER----SLAAGIISQLPKDDIYVD 751 (1028)
Q Consensus 677 ~L-l~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~----~~a~~~L~nL~~~~~~~~ 751 (1028)
.- +.+.+..+|+.|+++|..|+...+. . .....+++|+....+++. ..+ .++..+++++-...+..
T Consensus 550 t~Kv~HWd~~irelaa~aL~~Ls~~~pk-~------~a~~~L~~lld~~ls~~~-~~r~g~~la~~ev~~~~~~l~~~~- 620 (1133)
T KOG1943|consen 550 TKKVCHWDVKIRELAAYALHKLSLTEPK-Y------LADYVLPPLLDSTLSKDA-SMRHGVFLAAGEVIGALRKLEPVI- 620 (1133)
T ss_pred hcccccccHHHHHHHHHHHHHHHHhhHH-h------hcccchhhhhhhhcCCCh-HHhhhhHHHHHHHHHHhhhhhhhh-
Confidence 43 6678899999999999999954332 2 223568888877666653 222 33333444432211000
Q ss_pred HHHHh--ccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHH
Q 001690 752 EVLCK--SEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSL 829 (1028)
Q Consensus 752 ~~l~~--~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~ 829 (1028)
..+.+ -.+++.++..+..... .+|. ..-+.......+..+... .........-.+.-.++.+.+...+ .
T Consensus 621 ~~l~e~~i~~l~~ii~~~~~~~~-~rg~------~~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~ 691 (1133)
T KOG1943|consen 621 KGLDENRIAGLLSIIPPICDRYF-YRGQ------GTLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-Q 691 (1133)
T ss_pred hhhHHHHhhhhhhhccHHHHHHh-ccch------HHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchH-H
Confidence 00000 0111112222221100 0011 122223344444555442 3333333344455556666664444 7
Q ss_pred HHHHHHHHHHhhhhc
Q 001690 830 AKQRAASALADLSQS 844 (1028)
Q Consensus 830 vk~~Aa~aL~~ls~~ 844 (1028)
+|..|.+++..+...
T Consensus 692 i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 692 IRDAAVSAVSDLVST 706 (1133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999999888754
No 164
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.16 Score=59.13 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=173.6
Q ss_pred chHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHH---hh--cCc-c
Q 001690 452 DCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRN---MR--LDE-S 525 (1028)
Q Consensus 452 g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~---La--~~~-~ 525 (1028)
++...|+.+..+.|..++..|+..|..|+..-.-... .....+.+|++++.+++..|+..++- .. ..+ +
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 4555588888899999999999999888753221111 24456888999999999998755544 42 111 1
Q ss_pred -hHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHH
Q 001690 526 -SIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHS-KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILA 603 (1028)
Q Consensus 526 -~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~-~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~ 603 (1028)
....+.+ .+...+-+.+++.+-.+|-.|+++|+.+-.-. +...+.... .++..|-+.=. -++.......
T Consensus 273 ~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK-Klms~lRRkr~-------ahkrpk~l~s 343 (823)
T KOG2259|consen 273 SEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK-KLMSRLRRKRT-------AHKRPKALYS 343 (823)
T ss_pred hhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH-HHhhhhhhhhh-------cccchHHHHh
Confidence 1222232 36778888888999999999999998874432 222222221 11111111000 0111112111
Q ss_pred HH--HcCCCC----CcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHh
Q 001690 604 LM--VGGCQH----PQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFS 677 (1028)
Q Consensus 604 nL--~~~~~~----~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~ 677 (1028)
+- +.+... +....+..-..++..|+.-.+++-|+..--+++..|...++.|+.+++... ..++..|+.
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA------~~aldfLvD 417 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA------VRALDFLVD 417 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH------HHHHHHHHH
Confidence 11 111100 111122233567888999999999998889999999999999998876533 267889999
Q ss_pred hhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChH
Q 001690 678 SLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIY 749 (1028)
Q Consensus 678 Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~ 749 (1028)
++..+..++|..|..+|..++. +- . +.+..++.+...|.+.+. +++.+.--+|++.-..+.+
T Consensus 418 MfNDE~~~VRL~ai~aL~~Is~-~l--~------i~eeql~~il~~L~D~s~-dvRe~l~elL~~~~~~d~~ 479 (823)
T KOG2259|consen 418 MFNDEIEVVRLKAIFALTMISV-HL--A------IREEQLRQILESLEDRSV-DVREALRELLKNARVSDLE 479 (823)
T ss_pred HhccHHHHHHHHHHHHHHHHHH-Hh--e------ecHHHHHHHHHHHHhcCH-HHHHHHHHHHHhcCCCcHH
Confidence 9999999999999999999993 31 1 345678888888887764 8888888888876554443
No 165
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0011 Score=50.03 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=40.6
Q ss_pred cccCcCccccccCceEccCccc-chHHHHHHHHhcCCCCCCCcccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHS-FERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght-~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
+-.|.||.+---|.|+-.|||- .|..|-.+.++..+..||.||.++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4679999998888888899995 4999988888878899999998764
No 166
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.21 E-value=1.9 Score=44.74 Aligned_cols=241 Identities=14% Similarity=0.164 Sum_probs=144.2
Q ss_pred hHHHHHhhccCCchhHHHHHHHHhhh-chhhhhhhhcccchHHHHHHHhh------------cCChhhHHHHHHHHhccc
Q 001690 414 VRRIVKQICKGETMPEAIEVLSELTK-RETLGEKIGNTKDCITIMVSLLH------------NNNPNLSQKAHDVLQNLS 480 (1028)
Q Consensus 414 i~~lv~~L~~~e~~~~A~~~L~~Ls~-~~~~~~~i~~~~g~I~~Lv~lL~------------~~~~~~~~~a~~~L~nL~ 480 (1028)
+..++--+.+++.++.|+..|..--+ .++....+-..-|.+..|..-.- .....-.-+|...|.-++
T Consensus 28 ~~~~i~~l~~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvA 107 (293)
T KOG3036|consen 28 AYQLILSLVSPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVA 107 (293)
T ss_pred hhhHHHHhhCCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHh
Confidence 44445555555555655544443322 22333333222344444433221 112344568889999999
Q ss_pred cCchhHHHHHHcCCchhHHHhhcC-----CCHHHHHHHHHHHHHhhcC--cchHHHHhhCCcHHHHHHHhcCCCHHHHHH
Q 001690 481 HNTHFAVKMAEAGYFQPFVACFNR-----GSQETRALMASALRNMRLD--ESSIKTLKDRQFIHNVIQMLSSNSPVCKSA 553 (1028)
Q Consensus 481 ~~~~n~~~i~~~G~v~~Lv~lL~~-----~~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~ 553 (1028)
++++.+..+.++..---|-.+|.. ..+-++..++++++.|..+ ++.-..+...++||..++.+..|+...|..
T Consensus 108 SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtv 187 (293)
T KOG3036|consen 108 SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTV 187 (293)
T ss_pred cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHH
Confidence 999999999998654445556632 3345888899999999544 344555677899999999999999999999
Q ss_pred HHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHH
Q 001690 554 CLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFL 633 (1028)
Q Consensus 554 A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv 633 (1028)
|+.++..+-.++.+...+.+ ... + -.....+|.+++ .
T Consensus 188 A~fIlqKIlldD~GL~YiCq----------t~e------R-F~av~~~L~kmv--------------------------~ 224 (293)
T KOG3036|consen 188 ATFILQKILLDDVGLYYICQ----------TAE------R-FSAVALVLGKMV--------------------------F 224 (293)
T ss_pred HHHHHHHHhhccccHHHHHH----------hHH------H-HHHHHHHHHHHH--------------------------H
Confidence 99999887665443333222 111 0 011222233332 2
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhh-chH-HHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 634 QLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNN-DAI-TQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 634 ~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~-g~v-~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
.+.+.+++....+++++..+|+.++ .+|..++.+- +++ ..=...+-.+|+..+.+-..++.++.
T Consensus 225 ~l~~~ps~RllKhviRcYlrLsdnp-rar~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 225 QLVSMPSPRLLKHVIRCYLRLSDNP-RARAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcCCH-HHHHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 3455678888899999999998665 5666665520 111 01112222345566776667777766
No 167
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.19 E-value=0.34 Score=50.65 Aligned_cols=225 Identities=14% Similarity=0.143 Sum_probs=135.4
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcC--CCHHHHHHHHHHHHHhhcCcchHH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNR--GSQETRALMASALRNMRLDESSIK 528 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~ 528 (1028)
.+.|..+.+...+++.-.+..++-+|..+ ....+||.|+..|.. ..+-++.+|+.+|+.+.
T Consensus 35 ~~~i~~i~ka~~d~s~llkhe~ay~LgQ~----------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~------- 97 (289)
T KOG0567|consen 35 PAAIKAITKAFIDDSALLKHELAYVLGQM----------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG------- 97 (289)
T ss_pred hHHHHHHHHhcccchhhhccchhhhhhhh----------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-------
Confidence 34566666665555444444555555433 445689999998854 45668889999998654
Q ss_pred HHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhH-----HHHHh-------CCCcHHHHHHHHhccCCChhHHH
Q 001690 529 TLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMV-----KHLLL-------DPATIPLLLGLIQFVRSDPHLKH 596 (1028)
Q Consensus 529 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~-----~~lv~-------~~g~v~~L~~lL~~~~~~~~l~~ 596 (1028)
..+..+.|-+..+.+...+++.+..|+..+--.+... ..... ..+-+..|-..|...+.+.--++
T Consensus 98 ---~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 98 ---DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred ---chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 3345566666666777888888877877662211000 00000 00224444444444333222233
Q ss_pred HHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHH
Q 001690 597 EAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLF 676 (1028)
Q Consensus 597 ~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv 676 (1028)
.|.-.|.|+- .+..|..|.+=+..++.-.|..++.+|..|-+ .-+++.|.
T Consensus 175 ~amF~LRn~g------------------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s------------~~ai~~L~ 224 (289)
T KOG0567|consen 175 RAMFYLRNIG------------------TEEAINALIDGLADDSALFRHEVAFVFGQLQS------------PAAIPSLI 224 (289)
T ss_pred hhhhHhhccC------------------cHHHHHHHHHhcccchHHHHHHHHHHHhhccc------------hhhhHHHH
Confidence 3333333332 23367777777777788888888888887632 35777787
Q ss_pred hhhcC--CChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHH
Q 001690 677 SSLDS--DQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGII 740 (1028)
Q Consensus 677 ~Ll~~--~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L 740 (1028)
..|.. .++-+|-.|+.+|..+++ +.+++.|.+.+.+..+ .++..+.-+|
T Consensus 225 k~L~d~~E~pMVRhEaAeALGaIa~--------------e~~~~vL~e~~~D~~~-vv~esc~val 275 (289)
T KOG0567|consen 225 KVLLDETEHPMVRHEAAEALGAIAD--------------EDCVEVLKEYLGDEER-VVRESCEVAL 275 (289)
T ss_pred HHHHhhhcchHHHHHHHHHHHhhcC--------------HHHHHHHHHHcCCcHH-HHHHHHHHHH
Confidence 76654 345899999999998882 3568888888877654 4444444443
No 168
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.19 E-value=0.0043 Score=66.94 Aligned_cols=54 Identities=26% Similarity=0.584 Sum_probs=43.6
Q ss_pred CCcccCcCccccccC--ce-E-ccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCc
Q 001690 258 IESLVCPLCNELMED--PV-A-IVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPN 313 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~d--Pv-~-~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 313 (1028)
...|.|||+...|.. ++ . .+|||.|+..++.+.- ....||.|+.++...++++-
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~L 168 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPL 168 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEe
Confidence 468999999999964 33 3 4999999999999873 35679999999998876553
No 169
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=3 Score=51.83 Aligned_cols=472 Identities=15% Similarity=0.130 Sum_probs=230.7
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHHHHH
Q 001690 333 QNAIIKINSDDQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKEAIV 409 (1028)
Q Consensus 333 ~~~~~~L~s~~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~~i~ 409 (1028)
+.+.+.+..++-..+-.|++.+..+. +.|. .. + ...|...+.++.- +......|+-+|..|+... -......
T Consensus 344 e~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L-a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlps~l 418 (1133)
T KOG1943|consen 344 EHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL-A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLPSLL 418 (1133)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH-H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-CcchHHH
Confidence 34445555666666666777777777 5551 11 1 2244555555554 4566667777887777643 1000000
Q ss_pred HhchhHHHHHhhc---------cC-CchhHHHHHHHHhhhchhhhhhhhcccchHHHHH-----HHhhcCChhhHHHHHH
Q 001690 410 EAGAVRRIVKQIC---------KG-ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMV-----SLLHNNNPNLSQKAHD 474 (1028)
Q Consensus 410 ~~g~i~~lv~~L~---------~~-e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv-----~lL~~~~~~~~~~a~~ 474 (1028)
...++.++.-|. .| .+|..|+-.+|.+++..+.. .. .+.+..|. .-+-+.+..++..|..
T Consensus 419 -~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l--~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 419 -EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL--KPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred -HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh--hHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 233444444443 23 67889999999997632211 00 11222222 2233566778888888
Q ss_pred HHhccccCc---------------------hh-----HHHHHHc-CCchhHHHhhc-----CCCHHHHHHHHHHHHHhhc
Q 001690 475 VLQNLSHNT---------------------HF-----AVKMAEA-GYFQPFVACFN-----RGSQETRALMASALRNMRL 522 (1028)
Q Consensus 475 ~L~nL~~~~---------------------~n-----~~~i~~~-G~v~~Lv~lL~-----~~~~~~~~~a~~~L~~La~ 522 (1028)
++....... .| +..+++- |...++++.|- +=++.+++.++++|.+|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 887654221 12 2333333 77778887763 3478899999999999875
Q ss_pred CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHh--------HHHHHhCCC---cHHHHHHHHhccCCC
Q 001690 523 DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKM--------VKHLLLDPA---TIPLLLGLIQFVRSD 591 (1028)
Q Consensus 523 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~--------~~~lv~~~g---~v~~L~~lL~~~~~~ 591 (1028)
.. ......+..|+|++...+++...+.-+..+.+.+...... .+..+. | .++++..--......
T Consensus 574 ~~---pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~--~l~~ii~~~~~~~~~rg~~ 648 (1133)
T KOG1943|consen 574 TE---PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA--GLLSIIPPICDRYFYRGQG 648 (1133)
T ss_pred hh---HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh--hhhhhccHHHHHHhccchH
Confidence 32 2344457899999999999988887666666555332111 111111 2 233333322221111
Q ss_pred hhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhch
Q 001690 592 PHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDA 671 (1028)
Q Consensus 592 ~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~ 671 (1028)
..++......+.++..+.... ......++.-..+.+.++.++ .++..+..++..+++.--..-. ..+ ...
T Consensus 649 ~lmr~~~~~~Ie~~s~s~~~~-------~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~-~~~-~~l 718 (1133)
T KOG1943|consen 649 TLMRQATLKFIEQLSLSKDRL-------FQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADE-GEE-APL 718 (1133)
T ss_pred HHHHHHHHHHHHHhhhccchh-------HHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCc-hhh-hHH
Confidence 122233333344444332210 011122222223333343333 5777788888777652200000 000 011
Q ss_pred HHHHHhhhcCC-ChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHH
Q 001690 672 ITQLFSSLDSD-QPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYV 750 (1028)
Q Consensus 672 v~~Lv~Ll~~~-~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~ 750 (1028)
+...+.-+.+. +..++.--..++..+... .+..+ ..+.....+.....+.-..+.+...+.++..+...-...
T Consensus 719 i~~~ls~~~~~~~~~~r~g~~lal~~lp~~----~i~~~--~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~ 792 (1133)
T KOG1943|consen 719 ITRYLSRLTKCSEERIRRGLILALGVLPSE----LIHRH--LQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSL 792 (1133)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHccCcHH----hhchH--HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 22233333333 345555555555555411 11111 011112222222222212345555555555443311100
Q ss_pred HHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCC-hHHHHHHhhcCCHHHHH-HHhhcCCH
Q 001690 751 DEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTK-PELQRQVGKLEVYPSLI-RVLSTGSS 828 (1028)
Q Consensus 751 ~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~-~~~~~~i~~~~~i~~Lv-~lL~s~~~ 828 (1028)
...-.-...+..|++.|.+.-+. .....-.++.+.+..++..++.... |.. .+.+.+...+ .+++.+.+
T Consensus 793 ~~~~~~~k~~e~LL~~lddYttd-----~rGDVGswVReaAm~al~~~~~~l~~p~~----ld~~~i~~~~~~~vqQ~ve 863 (1133)
T KOG1943|consen 793 LFSESIEKFRETLLNALDDYTTD-----SRGDVGSWVREAAMKALSSLLDTLSSPKL----LDEDSINRIIRYFVQQAVE 863 (1133)
T ss_pred hccccHHHHHHHHHHHHhhcccc-----cCccHHHHHHHHHHHHHHhhhhhhcCccc----ccHHHHHHHHHHHHHHhHH
Confidence 00000112345677777654221 1223457899999999988875322 222 3444444433 36664433
Q ss_pred ---HHHHHHHHHHHhhhhc
Q 001690 829 ---LAKQRAASALADLSQS 844 (1028)
Q Consensus 829 ---~vk~~Aa~aL~~ls~~ 844 (1028)
..+..||.++..+...
T Consensus 864 KIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 864 KIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HHHHHHHHHHHHHhceeec
Confidence 4677888888877655
No 170
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.0036 Score=63.13 Aligned_cols=53 Identities=13% Similarity=0.360 Sum_probs=46.1
Q ss_pred CcccCcCccccccCce----EccCcccchHHHHHHHHhcCCCCCCCccccccccCCcC
Q 001690 259 ESLVCPLCNELMEDPV----AIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP 312 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv----~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 312 (1028)
..|.||+|.+.+++.+ .-+|||.||..|.++.++ +...||+|..++..+++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 5799999999988743 348999999999999887 6788999999999988866
No 171
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.08 E-value=0.53 Score=50.34 Aligned_cols=255 Identities=14% Similarity=0.123 Sum_probs=161.6
Q ss_pred HHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHH-HhchhHHHHHhhccC----CchhHHHHHHHHhhhchhhhhhhhcc
Q 001690 377 VEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIV-EAGAVRRIVKQICKG----ETMPEAIEVLSELTKRETLGEKIGNT 450 (1028)
Q Consensus 377 v~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~-~~g~i~~lv~~L~~~----e~~~~A~~~L~~Ls~~~~~~~~i~~~ 450 (1028)
-+++.+ +.-.+.-|+.+|.++.... +.|..+- +...-..+++.+++. +.+-+.+-.++.|+-+++...-|-..
T Consensus 155 gkl~Q~i~~lTrlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~ 233 (432)
T COG5231 155 GKLSQLIDFLTRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345555 6778888999999999988 5555443 455667888999887 67888899999998888888777766
Q ss_pred cchHHHHHHHhhcC-ChhhHHHHHHHHhccccCc--hhHHHHHHcCCchhHHHhhcC---CCHHHHHHHHHHHHHh-hcC
Q 001690 451 KDCITIMVSLLHNN-NPNLSQKAHDVLQNLSHNT--HFAVKMAEAGYFQPFVACFNR---GSQETRALMASALRNM-RLD 523 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~-~~~~~~~a~~~L~nL~~~~--~n~~~i~~~G~v~~Lv~lL~~---~~~~~~~~a~~~L~~L-a~~ 523 (1028)
..-|.-|+.+.++. .+.+.+-++.++.|++... +....+.-.|-+.+-++.|.. .+++++.. +.++ +.-
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~d----i~~i~s~l 309 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVID----IERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHH----HHHHHHHH
Confidence 77888999998864 4567778888999988743 455566666666777777733 34444433 2222 111
Q ss_pred cchHHHHhhCCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCHhHHHHHhC-CCcHHHHHHHHhccCCChhHHHHH
Q 001690 524 ESSIKTLKDRQFIHNVIQMLSSN----SPVCKSACLKCIKTLIAHSKMVKHLLLD-PATIPLLLGLIQFVRSDPHLKHEA 598 (1028)
Q Consensus 524 ~~~~~~i~~~g~i~~Lv~lL~s~----~~~~~~~A~~aL~nL~~~~~~~~~lv~~-~g~v~~L~~lL~~~~~~~~l~~~a 598 (1028)
.++.+.+. ...-.+.-|.++ +|.-+..-.| +.|...+.++ ...+..|.++++...+...+ ..|
T Consensus 310 ~~~~k~l~---~fD~Y~~ELdsg~l~wSp~H~~~dFW--------s~N~d~l~kdny~i~k~L~~~lq~n~~nt~i-~vA 377 (432)
T COG5231 310 VQNTKKLC---IFDNYLNELDSGRLEWSPYHHKKDFW--------STNLDMLIKDNYEIVKVLKKYLQSNNPNTWI-CVA 377 (432)
T ss_pred Hhhhhhhh---HHHHHHHHHhhCcccCCCcccccCch--------hhhHHHHhhhhHHHHHHHHHHHhcCCCCceE-eee
Confidence 11111111 011111112211 1110000000 2455566654 13688899999876654233 334
Q ss_pred HHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 001690 599 AEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLC 655 (1028)
Q Consensus 599 ~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~ 655 (1028)
..=+..+.+..+ + ....+..-|+-..++.++++++++++.+|+.++..+-
T Consensus 378 c~Di~~~Vr~~P--E-----~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 378 CSDIFQLVRASP--E-----INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhHHHHHHhCc--h-----HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 444566665432 2 3467788899999999999999999999999987654
No 172
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.04 E-value=0.018 Score=45.76 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHh
Q 001690 641 RETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCI 697 (1028)
Q Consensus 641 ~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~L 697 (1028)
|.+|..++.+|.+++............ ..++.|+.+|+++++.||.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~--~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP--ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH--HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 568899999999988777555555443 7999999999999999999999999875
No 173
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.37 Score=57.54 Aligned_cols=327 Identities=14% Similarity=0.166 Sum_probs=195.9
Q ss_pred cHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhchhhhhhhh
Q 001690 372 LIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEKIG 448 (1028)
Q Consensus 372 ~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i~ 448 (1028)
...++.+.+++ ++.+|..|+-+..++-..+ .+.....|.++.+-.++.+. .+..+|+.+|.++...+.......
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 45677888888 9999999888887776654 45555688899999999855 888999999999965432211111
Q ss_pred cccchHHHHHHHhhcCChhhHHHHHHHHhccccCch-hHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchH
Q 001690 449 NTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTH-FAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSI 527 (1028)
Q Consensus 449 ~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 527 (1028)
-....+..++..+..-++-.+.....+|.+-.-.+. ....+ +..+...|.+.++.+...+..++..+...-...
T Consensus 199 l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i-----~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~ 273 (734)
T KOG1061|consen 199 LNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDI-----CERLTPRLQHANSAVVLSAVKVILQLVKYLKQV 273 (734)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHH-----HHHhhhhhccCCcceEeehHHHHHHHHHHHHHH
Confidence 113445555555555555555555555555443333 33333 344666677778888888888887774322222
Q ss_pred HHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHh-ccCCChhHHHHHHHHHHHHH
Q 001690 528 KTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQ-FVRSDPHLKHEAAEILALMV 606 (1028)
Q Consensus 528 ~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~-~~~~~~~l~~~a~~~L~nL~ 606 (1028)
....-....++|+.++.+++ +.+..|++=+.-+-...+. ....-+..+. .-+++..++..=..++..++
T Consensus 274 ~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---------~~~~~~~~Ff~kynDPiYvK~eKleil~~la 343 (734)
T KOG1061|consen 274 NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---------ILKVEIKVFFCKYNDPIYVKLEKLEILIELA 343 (734)
T ss_pred HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---------HHHhHhHeeeeecCCchhhHHHHHHHHHHHh
Confidence 22222346688888888776 5555554333322222111 1111111111 11222344555555666666
Q ss_pred cCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhH
Q 001690 607 GGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVV 686 (1028)
Q Consensus 607 ~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v 686 (1028)
.... +.+ .+.-|...-..-+++.-..+++++.+++..-+.. .+.++.|+.+++-.-+.+
T Consensus 344 ~~~n------------l~q--vl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yv 402 (734)
T KOG1061|consen 344 NDAN------------LAQ--VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYV 402 (734)
T ss_pred hHhH------------HHH--HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccce
Confidence 5321 111 3444444455667788889999999988654332 478889999999887777
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCC
Q 001690 687 RRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPK 745 (1028)
Q Consensus 687 ~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~ 745 (1028)
...+...++.+-+..++.- ...+..+..-+.+=++.+.+.+-.|+++.-+.
T Consensus 403 vqE~~vvi~dilRkyP~~~--------~~vv~~l~~~~~sl~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 403 VQEAIVVIRDILRKYPNKY--------ESVVAILCENLDSLQEPEAKAALIWILGEYAE 453 (734)
T ss_pred eeehhHHHHhhhhcCCCch--------hhhhhhhcccccccCChHHHHHHHHHHhhhhh
Confidence 7778888888876555421 11233343334444455778888888887665
No 174
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.98 E-value=0.69 Score=48.84 Aligned_cols=211 Identities=14% Similarity=0.191 Sum_probs=133.1
Q ss_pred hhhhhhhhcccchHHHHHHHhhc-------C-----ChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCC--
Q 001690 441 ETLGEKIGNTKDCITIMVSLLHN-------N-----NPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGS-- 506 (1028)
Q Consensus 441 ~~~~~~i~~~~g~I~~Lv~lL~~-------~-----~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~-- 506 (1028)
++..-.+=...|.+..|.+=+-+ + ...-..+|+..|.-++.+++.+..+.++...--|..+|+..+
T Consensus 27 ~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~ 106 (262)
T PF04078_consen 27 PDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKT 106 (262)
T ss_dssp TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----S
T ss_pred cchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccc
Confidence 34444444446766666543321 1 113345788888899999999999999988777888885432
Q ss_pred ---HHHHHHHHHHHHHhhc--CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHH
Q 001690 507 ---QETRALMASALRNMRL--DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLL 581 (1028)
Q Consensus 507 ---~~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L 581 (1028)
+-++..+.++++.|.. +++....+.+.+.+|.-++.|..|+.-.|..|.-++..+-.++.+...+.+.
T Consensus 107 r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t------- 179 (262)
T PF04078_consen 107 RPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQT------- 179 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSS-------
T ss_pred cccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcC-------
Confidence 3478888899999965 4566666788999999999999999999999999999887776555444432
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHH
Q 001690 582 LGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKV 661 (1028)
Q Consensus 582 ~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~ 661 (1028)
.+-....+.+|.++.. .+...+++.+..+.+++-..|+.++ .+
T Consensus 180 ----------~eRf~av~~vL~~mV~--------------------------~l~~~pS~RLLKhIIrCYlRLsdnp-ra 222 (262)
T PF04078_consen 180 ----------AERFFAVAMVLNKMVE--------------------------QLVKQPSPRLLKHIIRCYLRLSDNP-RA 222 (262)
T ss_dssp ----------HHHHHHHHHHHHHHHH--------------------------HHHHS--HHHHHHHHHHHHHHTTST-TH
T ss_pred ----------HHHHHHHHHHHHHHHH--------------------------HHccCCChhHHHHHHHHHHHHccCH-HH
Confidence 1111223333444332 2345677888899999999998776 34
Q ss_pred HHHHHhhhchHHH-HHh----hhcCCChhHHHHHHHHHHHhc
Q 001690 662 RNLIESNNDAITQ-LFS----SLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 662 ~~~i~~~~g~v~~-Lv~----Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
+..++. .+|. |-. -+-.+|+.++.+=..++.|+.
T Consensus 223 r~aL~~---~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 223 REALRQ---CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp HHHHHH---HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHHHHH---hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 555543 1111 111 111245677777777777764
No 175
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=3.4 Score=53.18 Aligned_cols=426 Identities=13% Similarity=0.128 Sum_probs=204.2
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHH-hchhHHHHHhhccC-C-chhHHH---HHHHHhhhchhhhhhh
Q 001690 375 KLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVE-AGAVRRIVKQICKG-E-TMPEAI---EVLSELTKRETLGEKI 447 (1028)
Q Consensus 375 ~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-~g~i~~lv~~L~~~-e-~~~~A~---~~L~~Ls~~~~~~~~i 447 (1028)
.|..++.+ ++..|..++-.|..+..+....++.... ..-...+.+.|.+. | .+..|. ...++|+..+ .+
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~-~k--- 897 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS-LK--- 897 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch-hH---
Confidence 34455666 8888888776666665554223333333 33346677777765 2 233333 2333443322 11
Q ss_pred hcccchHHHHHHHhhcCCh-------hhHHHHHHHHh------ccccCchhHHHHHHcCCchh---HHHhhcC-CCHHHH
Q 001690 448 GNTKDCITIMVSLLHNNNP-------NLSQKAHDVLQ------NLSHNTHFAVKMAEAGYFQP---FVACFNR-GSQETR 510 (1028)
Q Consensus 448 ~~~~g~I~~Lv~lL~~~~~-------~~~~~a~~~L~------nL~~~~~n~~~i~~~G~v~~---Lv~lL~~-~~~~~~ 510 (1028)
.+-+..|+.-|-.|.. +...-.-.+|. +++.+.+-+...-+-|--+. ++++-++ ..-..+
T Consensus 898 ---~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk 974 (1702)
T KOG0915|consen 898 ---KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSK 974 (1702)
T ss_pred ---HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcc
Confidence 2344455554433211 11111111121 22222222222223332222 2222222 223345
Q ss_pred HHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHH-hcCC-HhHHHHHhCCCcHHHHHHHHhcc
Q 001690 511 ALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTL-IAHS-KMVKHLLLDPATIPLLLGLIQFV 588 (1028)
Q Consensus 511 ~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL-~~~~-~~~~~lv~~~g~v~~L~~lL~~~ 588 (1028)
..||--++.|+.....+..-.-...||.|.+.=.+++..++. |..-+||. ..++ ...+.-..+ ++.-|+.-+.+.
T Consensus 975 ~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~ne--Il~eLL~~lt~k 1051 (1702)
T KOG0915|consen 975 KGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNE--ILDELLVNLTSK 1051 (1702)
T ss_pred cchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHH--HHHHHHHhccch
Confidence 556666666654332111111123567776665677776654 55566665 4443 334444443 555555555443
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHH---HHHHHHHHhhcCC------H
Q 001690 589 RSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKI---QFLHLLVKLCYKS------E 659 (1028)
Q Consensus 589 ~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~---~a~~aL~~L~~~~------~ 659 (1028)
. =++++.+.-+|..|-.+....+. .+.+- .....++.....-...+++ .++++|..||... .
T Consensus 1052 e--wRVReasclAL~dLl~g~~~~~~-----~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1052 E--WRVREASCLALADLLQGRPFDQV-----KEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred h--HHHHHHHHHHHHHHHcCCChHHH-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 3 36778888899999987542211 00110 1122222222222333444 5566666665422 2
Q ss_pred HHHHHHHhhhchHHHHHh--hhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHH------
Q 001690 660 KVRNLIESNNDAITQLFS--SLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVE------ 731 (1028)
Q Consensus 660 ~~~~~i~~~~g~v~~Lv~--Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~------ 731 (1028)
.....+ ...+|.|+. .+ ++-+++|..+..++..|+. +.+..+...+ +..++.|++..+.-.+..
T Consensus 1123 ~~~~~l---~~iLPfLl~~gim-s~v~evr~~si~tl~dl~K-ssg~~lkP~~---~~LIp~ll~~~s~lE~~vLnYls~ 1194 (1702)
T KOG0915|consen 1123 KGKEAL---DIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAK-SSGKELKPHF---PKLIPLLLNAYSELEPQVLNYLSL 1194 (1702)
T ss_pred cHHHHH---HHHHHHHhccCcc-cchHHHHHHHHHHHHHHHH-hchhhhcchh---hHHHHHHHHHccccchHHHHHHHH
Confidence 222222 245666664 33 6667999999999999994 5566777663 456777776665543211
Q ss_pred ----HHHHHHHHH-hcCCCCChHHH--HH---HHh----ccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHH
Q 001690 732 ----ERSLAAGII-SQLPKDDIYVD--EV---LCK----SEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLH 797 (1028)
Q Consensus 732 ----~~~~a~~~L-~nL~~~~~~~~--~~---l~~----~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~ 797 (1028)
+..+|+-.+ .+.+++++-.. .. .++ ...+|.+.++++. +.. ....-+++..+.-
T Consensus 1195 r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~------sVg------l~Tkvg~A~fI~~ 1262 (1702)
T KOG0915|consen 1195 RLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG------SVG------LGTKVGCASFISL 1262 (1702)
T ss_pred hhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc------cCC------CCcchhHHHHHHH
Confidence 111111111 12223222211 00 011 2356777777774 211 2222333333333
Q ss_pred hc----CCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcc
Q 001690 798 FT----DPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQST 845 (1028)
Q Consensus 798 l~----~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~ 845 (1028)
++ ..--|..- ..+..++...++.++.+++.-|.|.+.|..-+
T Consensus 1263 L~~r~~~emtP~sg------Kll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1263 LVQRLGSEMTPYSG------KLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHhccccCcchh------HHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 32 11112221 22456666677789999999999999998743
No 176
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.95 E-value=0.003 Score=68.36 Aligned_cols=34 Identities=24% Similarity=0.727 Sum_probs=31.1
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHh
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQ 292 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~ 292 (1028)
+++.||||...++||++++|||+.|+.|-...+-
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 6899999999999999999999999999876553
No 177
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.83 E-value=0.58 Score=54.09 Aligned_cols=294 Identities=10% Similarity=0.153 Sum_probs=156.7
Q ss_pred cHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHH---HHHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhchhhhh
Q 001690 372 LIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIH---KEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGE 445 (1028)
Q Consensus 372 ~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~---k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~ 445 (1028)
.+..+.++|++ .+.+|.+|+.....|+.-- .+ -..+...|.| +.+-|... |+.-..+.++..+-.....+.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vl-k~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVL-KACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 44556778888 9999999998777765422 11 1222223432 33444433 555555555555543333333
Q ss_pred hhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchh----HHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh
Q 001690 446 KIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHF----AVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR 521 (1028)
Q Consensus 446 ~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n----~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La 521 (1028)
.---..|.+|.|.-.|++....++.+.+..+..++.+... +.-|. +-=-|+.+|++-+.+++.+|..+++-++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 3333468999999999999999999999998888866432 22121 1224778888888899998888777663
Q ss_pred c--Ccch-HH----------------------HHhh-CC---cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HhHHHH
Q 001690 522 L--DESS-IK----------------------TLKD-RQ---FIHNVIQMLSSNSPVCKSACLKCIKTLIAHS-KMVKHL 571 (1028)
Q Consensus 522 ~--~~~~-~~----------------------~i~~-~g---~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~-~~~~~l 571 (1028)
. .|.. -. .+++ .| ++|.|+.=-..+...+|.-.+++++.+-..- +....-
T Consensus 759 ~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY 838 (975)
T COG5181 759 RAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY 838 (975)
T ss_pred hhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2 1110 00 0111 11 1222222222344455555555554442221 111111
Q ss_pred HhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc-------CCCHHHH
Q 001690 572 LLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA-------NTERETK 644 (1028)
Q Consensus 572 v~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~-------~~~~~~~ 644 (1028)
+- ...|.|-..|... ++.-+..|+.++.+|+-++.. .|.....++||+ .++|.++
T Consensus 839 vy--~itPlleDAltDr--D~vhRqta~nvI~Hl~Lnc~g--------------tg~eda~IHLlNllwpNIle~sPhvi 900 (975)
T COG5181 839 VY--SITPLLEDALTDR--DPVHRQTAMNVIRHLVLNCPG--------------TGDEDAAIHLLNLLWPNILEPSPHVI 900 (975)
T ss_pred HH--HhhHHHHhhhccc--chHHHHHHHHHHHHHhcCCCC--------------cccHHHHHHHHHHhhhhccCCCcHHH
Confidence 11 1344444444433 256678889999999986542 233444444443 3455555
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 645 IQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 645 ~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
......+-.+ +..+.. .-....+.+=|-++...+|. +-|...|..
T Consensus 901 ~~~~Eg~e~~-------~~~lg~-g~~m~Yv~qGLFHPs~~VRk-~ywtvyn~m 945 (975)
T COG5181 901 QSFDEGMESF-------ATVLGS-GAMMKYVQQGLFHPSSTVRK-RYWTVYNIM 945 (975)
T ss_pred HHHHHHHHHH-------HHHhcc-HHHHHHHHHhccCchHHHHH-HHHHHHhhh
Confidence 4433333332 222322 22233455556667666655 556666665
No 178
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0079 Score=63.70 Aligned_cols=52 Identities=23% Similarity=0.439 Sum_probs=43.8
Q ss_pred CCCCCCcccCcCccccccCceEc-cCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 254 QVYPIESLVCPLCNELMEDPVAI-VCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 254 ~~~~~~~~~Cpic~~~~~dPv~~-~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
...+++.-.||+|+.--.+|.++ -+|..||..||-.+.. .+..||+|+.+..
T Consensus 294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 45567899999999877777665 6799999999999998 7789999988764
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=0.25 Score=60.35 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=147.8
Q ss_pred hhhhHHHHhhccHHHHHHHHhc-CHHHHHH-HHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC-----CchhHHHHH
Q 001690 361 PQYAEKAAKAGLIPKLVEFLKD-TRLSTEA-ILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG-----ETMPEAIEV 433 (1028)
Q Consensus 361 ~~~r~~i~~~g~ip~Lv~lL~s-~~~~~~~-A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~-----e~~~~A~~~ 433 (1028)
+-.-..-..-|..|..++||.+ ..++|-- +.---..|+.+. ..+..+++.++-..++.+|..+ |.+..|+-+
T Consensus 502 pWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~-SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFV 580 (1387)
T KOG1517|consen 502 PWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDP-SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFV 580 (1387)
T ss_pred hhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCc-hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHH
Confidence 3334444557999999999999 6666543 333345667776 7788888888888888888873 556667777
Q ss_pred HHHhhhc-hhhhhhhhcccchHHHHHHHhhcC-ChhhHHHHHHHHhccccC-chhHHHHHHcCCchhHHHhhcCCCHHHH
Q 001690 434 LSELTKR-ETLGEKIGNTKDCITIMVSLLHNN-NPNLSQKAHDVLQNLSHN-THFAVKMAEAGYFQPFVACFNRGSQETR 510 (1028)
Q Consensus 434 L~~Ls~~-~~~~~~i~~~~g~I~~Lv~lL~~~-~~~~~~~a~~~L~nL~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~ 510 (1028)
|..+..+ +-..+.-.+ .+.|..-...|.++ .+-.+...+-+|..|-.+ +..+..=++.++.+.|+.+|++..++++
T Consensus 581 LAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVR 659 (1387)
T KOG1517|consen 581 LAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVR 659 (1387)
T ss_pred HHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHH
Confidence 7777554 334444444 56777777788875 567778888889888654 5677777788999999999999999999
Q ss_pred HHHHHHHHHhhc-----CcchHHHH-----------hhCCcHH----HHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHH
Q 001690 511 ALMASALRNMRL-----DESSIKTL-----------KDRQFIH----NVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKH 570 (1028)
Q Consensus 511 ~~a~~~L~~La~-----~~~~~~~i-----------~~~g~i~----~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~ 570 (1028)
..|+-+|+.+-. .++....+ .-+..++ .++.+++.+++-++...+-+|..........-.
T Consensus 660 aAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 660 AAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred HHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence 999999999843 33333332 0122233 677788889999998888888888766544333
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.67 E-value=0.29 Score=60.78 Aligned_cols=301 Identities=16% Similarity=0.109 Sum_probs=158.0
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCC
Q 001690 630 NVFLQLIA-NTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLP 708 (1028)
Q Consensus 630 ~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~ 708 (1028)
..+.+.++ -..++.|..|+..|..++....+-. .. ...+|.++.|+..+..+||..|..+|..+-..- +++.+
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V--r~~~~ 498 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KL--DRVLPYFVHLLMDSEADVRATALETLTELLALV--RDIPP 498 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc--cCCCc
Confidence 33334444 2456788899999999887652211 11 478999999999999999999998887664111 11111
Q ss_pred C--CCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCC---ChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcc
Q 001690 709 P--SPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKD---DIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQ 783 (1028)
Q Consensus 709 ~--~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~ 783 (1028)
. ...-+-.+|.|-.++.+++..-++.+-+..|+.|+.. --+..+.+..+|. +...
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~-------~n~~------------- 558 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGM-------LNDP------------- 558 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccc-------ccCc-------------
Confidence 0 0012345666777777655445555555555544431 1111122222211 1110
Q ss_pred hhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccC
Q 001690 784 DASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLM 863 (1028)
Q Consensus 784 ~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~ 863 (1028)
+... .-....+.+.++.+ +++=..++.||....+.||+.--..|+.|+.--.. . ...+.
T Consensus 559 nset---------~~~~~~~~~~~~L~--~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---------~-ksND~ 617 (1431)
T KOG1240|consen 559 NSET---------APEQNYNTELQALH--HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---------E-KSNDV 617 (1431)
T ss_pred cccc---------ccccccchHHHHHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---------c-ccccc
Confidence 0000 00001233333221 23333456677777778888777666666542111 0 00012
Q ss_pred chhhHhhhhhhcccccCC--CCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccc
Q 001690 864 PMFDMTKLLLSMSWCCSS--WGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHST 941 (1028)
Q Consensus 864 ~~~~~~~~l~~~~~~~~~--~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~ 941 (1028)
....++-+|-..=|.++. -....+.|-. .|- . =++.+.+|.|.+-|.++++-|...|+.+|..|...+-.
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~-VG~----r---s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIF-VGW----R---SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEE-Eee----e---eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence 222232222221111000 0000111111 111 1 13456677777789999999999999999999977654
Q ss_pred hhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhhhh
Q 001690 942 LSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTL 990 (1028)
Q Consensus 942 ~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~~~~ 990 (1028)
.+.++..|.+ -..-++.|+|.=+|..++.+|..+.+--...+.|
T Consensus 690 ~K~~v~~i~~-----~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advy 733 (1431)
T KOG1240|consen 690 RKPAVKDILQ-----DVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVY 733 (1431)
T ss_pred chHHHHHHHH-----hhhhheeCchHHHHHHHHHHHHHHHhhhhhhhhe
Confidence 4444444432 2333677999999999999888777544444433
No 181
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=6.7 Score=46.65 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=165.6
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhcCChhhhHHHHhhccHHHHHHHHhc---CHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 001690 334 NAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKD---TRLSTEAILKCLYFLAKYSDIHKEAIVE 410 (1028)
Q Consensus 334 ~~~~~L~s~~~~~~~~al~~L~~l~~~~~~r~~i~~~g~ip~Lv~lL~s---~~~~~~~A~~~L~~Ls~~~~~~k~~i~~ 410 (1028)
.....|.+.++-.+.-|+..+.++- +.+.+..+.. -|| ++|-| ...++..|+-+|..|=...++ .+..
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG-~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~ 185 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIG-SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNP 185 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhc-cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccCh
Confidence 3445667777777777777666653 3334333332 344 56655 445666666666666444422 1111
Q ss_pred hchhHHHHHhhccC--CchhHHHHHHHHhhhc--hhhhhhhhcccchHHHHHHHhhc-------------CChhhHHHHH
Q 001690 411 AGAVRRIVKQICKG--ETMPEAIEVLSELTKR--ETLGEKIGNTKDCITIMVSLLHN-------------NNPNLSQKAH 473 (1028)
Q Consensus 411 ~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~--~~~~~~i~~~~g~I~~Lv~lL~~-------------~~~~~~~~a~ 473 (1028)
.+=..+++.+|.+. .+...++..+.-|++. ++++..... ++..|-+.... +.|-.+...+
T Consensus 186 ~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~---avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~ 262 (938)
T KOG1077|consen 186 GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL---AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL 262 (938)
T ss_pred hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH---HHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence 33467788888877 6666677777777652 234333321 22233222211 2467888888
Q ss_pred HHHhccccCc--hhHHHHHHcCCchhHHHhhcCC--CHHHHH-HHH-HHHHH---hh-cCcchHHHHhhCCcHHHHHHHh
Q 001690 474 DVLQNLSHNT--HFAVKMAEAGYFQPFVACFNRG--SQETRA-LMA-SALRN---MR-LDESSIKTLKDRQFIHNVIQML 543 (1028)
Q Consensus 474 ~~L~nL~~~~--~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~-~a~-~~L~~---La-~~~~~~~~i~~~g~i~~Lv~lL 543 (1028)
++|.+.-.-+ .++.+..+ +...++...... +..++. +|- ++|.. |+ ..+.....+.+ ++..|-++|
T Consensus 263 rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fl 338 (938)
T KOG1077|consen 263 RLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFL 338 (938)
T ss_pred HHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHh
Confidence 8888874332 34444433 233333333211 112222 222 22222 22 33444445544 567888899
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhh
Q 001690 544 SSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQEL 623 (1028)
Q Consensus 544 ~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l 623 (1028)
.+..+.+|--|+..+..|++.......+-.. ...++..|+... +..+++.|+..|..+|.....
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkter-DvSirrravDLLY~mcD~~Na------------ 402 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTER-DVSIRRRAVDLLYAMCDVSNA------------ 402 (938)
T ss_pred hcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhcccc-chHHHHHHHHHHHHHhchhhH------------
Confidence 9888999999999999999886554443332 667777777443 468899999999999974421
Q ss_pred cccccHHHHHHHhcCCCHHHHHHHHH
Q 001690 624 QSEHNVNVFLQLIANTERETKIQFLH 649 (1028)
Q Consensus 624 ~~~g~v~~Lv~lL~~~~~~~~~~a~~ 649 (1028)
...|..|+..|.+.++.+++..+-
T Consensus 403 --k~IV~elLqYL~tAd~sireeivl 426 (938)
T KOG1077|consen 403 --KQIVAELLQYLETADYSIREEIVL 426 (938)
T ss_pred --HHHHHHHHHHHhhcchHHHHHHHH
Confidence 126778889999999988885443
No 182
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.59 E-value=0.051 Score=48.90 Aligned_cols=66 Identities=8% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHhHHHHHhC
Q 001690 509 TRALMASALRNMR-LDESSIKTLKDRQFIHNVIQMLS--SNSPVCKSACLKCIKTLIAHSKMVKHLLLD 574 (1028)
Q Consensus 509 ~~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~ 574 (1028)
.+...+.+|++|+ .++.++..+.+.|+||.++.... ..+|-.++.|+.++.||+...+..+.++..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567788999995 57899999999999999998754 678999999999999999988666666654
No 183
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.47 Score=53.26 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=69.4
Q ss_pred CCccHHHHHHHHHHHhhhcccc-hhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhhhhhccc---c
Q 001690 920 MESGVAEAALTALETLLADHST-LSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRS---E 995 (1028)
Q Consensus 920 ~d~~v~~~A~~aL~~L~~d~~~-~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~---~ 995 (1028)
.+.+|...|..||+|+++--.. .+-+...+.+..-+..+-.....+.-.+|=+|..++.++|+++-+.-+-.+-+ =
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F 575 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAF 575 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHH
Confidence 4568999999999999753221 11223334342233333333447788899999999999999988752222222 2
Q ss_pred hHHHhhccc---cchHHHHHHHHHHhccCCCCC
Q 001690 996 RILIQLLDD---DALKKKVALVLMQMNIIPHQS 1025 (1028)
Q Consensus 996 ~~Lv~~l~~---~~~~~~aa~~L~~l~~~~~~s 1025 (1028)
..|-.++.+ ..+|..||.+|+.-++=-+++
T Consensus 576 ~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~ 608 (728)
T KOG4535|consen 576 NALTSLVTSCKNFKVRIRAAAALSVPGKREQYG 608 (728)
T ss_pred HHHHHHHHHhccceEeehhhhhhcCCCCcccch
Confidence 366666665 899999999999877655544
No 184
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=7.8 Score=46.77 Aligned_cols=285 Identities=13% Similarity=0.099 Sum_probs=148.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCC
Q 001690 628 NVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPL 707 (1028)
Q Consensus 628 ~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~ 707 (1028)
..+.+=+++.+.+.-+...+++++.++...... . . ..++..|-.++.++..-+|-+|.+.|..++..++..-..
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~--l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--E--L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--h--c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 445555667778888889999999988665432 1 1 357777888889999999999999999998655542221
Q ss_pred CCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 001690 708 PPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASL 787 (1028)
Q Consensus 708 ~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~ 787 (1028)
. ..-+..|| .+++. .....|...|-. .++......+ +..+...+.+. .+.....+
T Consensus 320 c-----N~elE~lI---td~Nr-sIat~AITtLLK--TG~e~sv~rL-----m~qI~~fv~di---------sDeFKivv 374 (865)
T KOG1078|consen 320 C-----NLDLESLI---TDSNR-SIATLAITTLLK--TGTESSVDRL-----MKQISSFVSDI---------SDEFKIVV 374 (865)
T ss_pred c-----chhHHhhh---ccccc-chhHHHHHHHHH--hcchhHHHHH-----HHHHHHHHHhc---------cccceEEe
Confidence 1 12244444 33332 333344443322 2333332222 22333333332 11112222
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhh-cCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchh
Q 001690 788 LEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLS-TGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMF 866 (1028)
Q Consensus 788 ~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~ 866 (1028)
. .++.+|+.... . ...+.++.|..+|+ .|..+-|+...-++..+...... .|+ .+..
T Consensus 375 v-dai~sLc~~fp---~------k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd-----------sKe-~~L~ 432 (865)
T KOG1078|consen 375 V-DAIRSLCLKFP---R------KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD-----------SKE-RGLE 432 (865)
T ss_pred H-HHHHHHHhhcc---H------HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc-----------hhh-HHHH
Confidence 2 23333332220 1 12244667777776 45667777777777766654333 110 0111
Q ss_pred hHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHH
Q 001690 867 DMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAI 946 (1028)
Q Consensus 867 ~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~ 946 (1028)
.+..++.. |... ..+.--+|...-. ..+......-|...-+.+-=.+.-|+.+|+.||..+....+
T Consensus 433 ~LCefIED---ce~~---~i~~rILhlLG~E--gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~------ 498 (865)
T KOG1078|consen 433 HLCEFIED---CEFT---QIAVRILHLLGKE--GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV------ 498 (865)
T ss_pred HHHHHHHh---ccch---HHHHHHHHHHhcc--CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC------
Confidence 11111111 1110 0000000100000 00001112346666666666778899999999999983322
Q ss_pred HHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHH
Q 001690 947 AVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQ 981 (1028)
Q Consensus 947 ~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~ 981 (1028)
.+ .......+.+.+...|+++|++|..++..+-
T Consensus 499 -~l-~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 499 -VL-LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -Cc-cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 11 3345556666677899999999999887766
No 185
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1 Score=53.54 Aligned_cols=398 Identities=14% Similarity=0.139 Sum_probs=219.3
Q ss_pred ccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhh
Q 001690 371 GLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEK 446 (1028)
Q Consensus 371 g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~ 446 (1028)
..+|.+..-|.+ +..+|++|+-++..+=... +++. ..+=+.+-..|... ..+++|...|+..-..
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~----~~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~E------ 202 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNF----EHLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPE------ 202 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhh----hhhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHH------
Confidence 467777788888 9999999987776665442 1111 22223333444433 6778887777665321
Q ss_pred hhcccchHHHHHHHh---hcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 001690 447 IGNTKDCITIMVSLL---HNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLD 523 (1028)
Q Consensus 447 i~~~~g~I~~Lv~lL---~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 523 (1028)
.++.-|.... .+-++..+...++.++.-|...... ++-.|..+..+|.+.++.+..+|+.+|..|+..
T Consensus 203 -----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 203 -----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred -----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 1111111111 1223455556666666665533221 223466788889888999999999999999887
Q ss_pred cchHHHHhhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHH
Q 001690 524 ESSIKTLKDRQFIHNVIQMLSS-NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEIL 602 (1028)
Q Consensus 524 ~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L 602 (1028)
|..-.. +...+++++-. ++-.++--...-|..+. .....+++ |.+--.+++|.+++ ..+++++..+.
T Consensus 274 p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il~--~l~mDvLrvLss~d--ldvr~Ktldi~ 341 (948)
T KOG1058|consen 274 PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKILQ--GLIMDVLRVLSSPD--LDVRSKTLDIA 341 (948)
T ss_pred HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHHH--HHHHHHHHHcCccc--ccHHHHHHHHH
Confidence 764443 23456665542 33333333333333333 33344444 56666777777543 57788888888
Q ss_pred HHHHcCCCCCcccccccchhhcccccHHHHHHHhc-----CC------CHHHHHHHHHHHHHhhcCCHHHHHHHHhhhch
Q 001690 603 ALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA-----NT------ERETKIQFLHLLVKLCYKSEKVRNLIESNNDA 671 (1028)
Q Consensus 603 ~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~-----~~------~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~ 671 (1028)
..|+.+.. +..++.+|+ .. +...+.-.++++...+..-++.. +..
T Consensus 342 ldLvssrN------------------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a------atv 397 (948)
T KOG1058|consen 342 LDLVSSRN------------------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA------ATV 397 (948)
T ss_pred Hhhhhhcc------------------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH------HHH
Confidence 88887542 223333332 11 12235567778888777665432 467
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHH
Q 001690 672 ITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVD 751 (1028)
Q Consensus 672 v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~ 751 (1028)
++.|+.++.+.++.........++..-+..+ . .....+..|+.-+..=.+......|+|+++.-+.+..+++
T Consensus 398 V~~ll~fisD~N~~aas~vl~FvrE~iek~p------~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~ 469 (948)
T KOG1058|consen 398 VSLLLDFISDSNEAAASDVLMFVREAIEKFP------N--LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQ 469 (948)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhCc------h--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHH
Confidence 8889999999988655555554444331111 1 1234466666555443333566789999998887766554
Q ss_pred H---HHH-hccchHHHHHHHHhhcCCCCCCCC-C-----C----cchhh---HHHHHHHHHHHhcCCCChHHHHHHhhcC
Q 001690 752 E---VLC-KSEALKAIHEVICSMDGRHNGIRT-P-----A----CQDAS---LLEIALAALLHFTDPTKPELQRQVGKLE 814 (1028)
Q Consensus 752 ~---~l~-~~g~v~~L~~lL~~~~~~~~~~~~-~-----~----~~~~~---~~e~~~~aL~~l~~~~~~~~~~~i~~~~ 814 (1028)
. .+. ..|=+|.+..=+....+....... . . ....+ ..+.+.+. ..+ ...++
T Consensus 470 ~~~k~i~~slGEvp~~~sei~~~~~~~~~e~~~~~~s~~~~~~~~v~~dGTYAteSA~s~-------~~~-----~~~~~ 537 (948)
T KOG1058|consen 470 SVIKIIRQSLGEVPIVCSEIERLHGEQTKEIELTSSSAPSSTKPKVLADGTYATESAFSS-------SSP-----TVKEA 537 (948)
T ss_pred HHHHHHHHhccccceehHHHhhhhcccccccccccccccccCCCeeecCccchhhhhhcc-------ccc-----chhhc
Confidence 3 122 346677655443321000000000 0 0 00000 11221111 011 12345
Q ss_pred CHHHHHHHhhcCCHHHHHHHHHHHHhhhhc
Q 001690 815 VYPSLIRVLSTGSSLAKQRAASALADLSQS 844 (1028)
Q Consensus 815 ~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~ 844 (1028)
--|++-..+.+|+.-+-..-|..|..|+..
T Consensus 538 ~rp~lrr~ll~GdfflgA~la~tLtKl~lr 567 (948)
T KOG1058|consen 538 DRPSLRRFLLTGDFFLGAVLAITLTKLVLR 567 (948)
T ss_pred cchHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 566788888889888877777788777764
No 186
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.56 E-value=0.16 Score=49.58 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=97.1
Q ss_pred HHhhCCcHHHHHHHhcCCCH------HHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHH
Q 001690 529 TLKDRQFIHNVIQMLSSNSP------VCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEIL 602 (1028)
Q Consensus 529 ~i~~~g~i~~Lv~lL~s~~~------~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L 602 (1028)
.++..||+..|++++.++.. .....++.++..|-.++-.....+.. ..|...+..+.....+..+.+.|.++|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~-~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSD-SFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccH-HHHHHHHHHHccccccchHHHHHHHHH
Confidence 56677899999999998763 66778899999988876545555555 688888999987665678889999999
Q ss_pred HHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 001690 603 ALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS 658 (1028)
Q Consensus 603 ~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 658 (1028)
-+++.++... .+.+.++=-++.|+.+|..++++++.+++..+..|-...
T Consensus 85 Es~Vl~S~~l-------y~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 85 ESIVLNSPKL-------YQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHhCCHHH-------HHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 9999865421 235556667899999999999999999999998887655
No 187
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.011 Score=61.80 Aligned_cols=50 Identities=26% Similarity=0.602 Sum_probs=40.9
Q ss_pred cCcCcc-ccccCceE----ccCcccchHHHHHHHHhcCCCCCCCccccccccCCc
Q 001690 262 VCPLCN-ELMEDPVA----IVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLM 311 (1028)
Q Consensus 262 ~Cpic~-~~~~dPv~----~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~ 311 (1028)
.||.|+ +.+..|-+ -+|||+.|.+|..+.|..|...||.|...+...+++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 499996 45666643 389999999999999999999999999988765554
No 188
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.016 Score=61.47 Aligned_cols=48 Identities=25% Similarity=0.507 Sum_probs=40.2
Q ss_pred CCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 258 IESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
.++-.||||.----..|..||||.-|+.||.+++- +.+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 37889999988777788899999999999999987 5667888876654
No 189
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.0067 Score=67.19 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=38.6
Q ss_pred CCCcccCcCcccccc-----------------CceEccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 257 PIESLVCPLCNELME-----------------DPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~-----------------dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
....--|+||+.... +-..+||.|.|.+.|+++|.+.-+..||+||.+++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 345567999985321 12346999999999999999866679999999875
No 190
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.36 E-value=0.34 Score=47.31 Aligned_cols=120 Identities=13% Similarity=0.174 Sum_probs=95.3
Q ss_pred HHHHhCCCcHHHHHHHHhccCC----ChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCC--CHH
Q 001690 569 KHLLLDPATIPLLLGLIQFVRS----DPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANT--ERE 642 (1028)
Q Consensus 569 ~~lv~~~g~v~~L~~lL~~~~~----~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~ 642 (1028)
..++.. ||+..|++++.+++. .......+..++..|-....- .-...+...|.+.+..++.. ++.
T Consensus 5 ~EFI~~-~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~v--------sWd~l~~~FI~Kia~~Vn~~~~d~~ 75 (160)
T PF11841_consen 5 QEFISR-DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIV--------SWDTLSDSFIKKIASYVNSSAMDAS 75 (160)
T ss_pred HHHHhc-cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcC--------chhhccHHHHHHHHHHHccccccch
Confidence 456777 999999999998763 124445666677777764320 12346677899999999844 478
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 643 TKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 643 ~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
+...++..|-++..+++..-..+.+ +=-++.|+..|+.++++++.+|..++..|-
T Consensus 76 i~q~sLaILEs~Vl~S~~ly~~V~~-evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 76 ILQRSLAILESIVLNSPKLYQLVEQ-EVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHhc-cCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8999999999999999887888887 788999999999999999999999999887
No 191
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.33 E-value=0.085 Score=47.49 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=56.2
Q ss_pred HHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc---CHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 001690 348 KSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD---TRLSTEAILKCLYFLAKYSDIHKEAIVE 410 (1028)
Q Consensus 348 ~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s---~~~~~~~A~~~L~~Ls~~~~~~k~~i~~ 410 (1028)
..+++.|.++| .++.+++.+.+.|++|.++..-.- ++.+++.|+.++++|..++.+|++.|.+
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45677889999 999999999999999999886543 8999999999999999999999998876
No 192
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.0086 Score=65.14 Aligned_cols=61 Identities=25% Similarity=0.623 Sum_probs=46.6
Q ss_pred CcccCcCccccccCc-----eEccCcccchHHHHHHHHhcC-CCCCCCccccccccCCcCccchhhh
Q 001690 259 ESLVCPLCNELMEDP-----VAIVCGHSFERKAIQEHFQRG-GKNCPTCRQELLSLDLMPNLSLRSS 319 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dP-----v~~~cght~c~~ci~~~~~~~-~~~CP~~~~~l~~~~l~~n~~l~~~ 319 (1028)
.-.+||||++-+.-| |.+.|||-|-..||++|+-+. ...||.|..+-..+.+.|-+.++..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 356899999977655 356899999999999999422 2579999887777777776655543
No 193
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.19 E-value=2 Score=53.33 Aligned_cols=243 Identities=13% Similarity=0.105 Sum_probs=149.3
Q ss_pred cchHHHHHHHhhc-----CChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhh----cCCC----HHHHHHHHHHH
Q 001690 451 KDCITIMVSLLHN-----NNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF----NRGS----QETRALMASAL 517 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~-----~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL----~~~~----~~~~~~a~~~L 517 (1028)
.|++..|+.++.+ +........+..|...+.-+.|+.++++.|+++.|++.| ..+. +++-+....++
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 7999999999985 233455566677777788899999999999999999987 3434 45656666555
Q ss_pred HHhh---cCcchH---HHHhhCC----c---HHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHH
Q 001690 518 RNMR---LDESSI---KTLKDRQ----F---IHNVIQMLSSN----SPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPL 580 (1028)
Q Consensus 518 ~~La---~~~~~~---~~i~~~g----~---i~~Lv~lL~s~----~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~ 580 (1028)
-.|. ...... ......| . +..|++.+.++ ++.+...-+++|-+|+...+.....+-+ -+.+
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFKP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHH
Confidence 5552 111111 1011111 2 56666666643 5788899999999999887554443322 2233
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcC--------CCHHHHH-------
Q 001690 581 LLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIAN--------TERETKI------- 645 (1028)
Q Consensus 581 L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~--------~~~~~~~------- 645 (1028)
.+++=.-+..+..--..-...++.++.+-+... ..+.-...+.+.|++...++.|.. .+|+++.
T Consensus 274 ~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~-~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNS-NGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred hcChhhcccccCchHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 333322221111101233555666666432211 112234678899999999888763 3555655
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCC-ChhHHHHHHHHHHHhc
Q 001690 646 -QFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSD-QPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 646 -~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~-~~~v~~~A~~~L~~Ls 698 (1028)
.+++.|..||......+..+.+ +.++.|-.|=+.. +..+-.-|-.+|-.|.
T Consensus 353 p~iL~lL~GLa~gh~~tQ~~~~~--~~l~~lH~LEqvss~~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPTQLLIAE--QLLPLLHRLEQVSSEEHIGSLAENLLEALA 405 (802)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHh--hHHHHHHHhhcCCCccchHHHHHHHHHHHh
Confidence 5888999999988766766654 7775554443333 3467777777777777
No 194
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.19 E-value=0.098 Score=53.35 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=90.6
Q ss_pred CChhhHHHHHHHHhccccCchhHHHHHHc----------------CCchhHHHhhcC------CCHHHHHHHHHHHHHhh
Q 001690 464 NNPNLSQKAHDVLQNLSHNTHFAVKMAEA----------------GYFQPFVACFNR------GSQETRALMASALRNMR 521 (1028)
Q Consensus 464 ~~~~~~~~a~~~L~nL~~~~~n~~~i~~~----------------G~v~~Lv~lL~~------~~~~~~~~a~~~L~~La 521 (1028)
.+......++..|.||+..+..+..+.+. .++..|+..+.. ...+-....+.+|.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34455667888899998888777655533 256677777744 22334556778999999
Q ss_pred cCcchHHHHhhC--Cc--HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCC--CcHHHHHHHHh
Q 001690 522 LDESSIKTLKDR--QF--IHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDP--ATIPLLLGLIQ 586 (1028)
Q Consensus 522 ~~~~~~~~i~~~--g~--i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~--g~v~~L~~lL~ 586 (1028)
..+++|..+.+. +. +..|+-.+.+.+..-|.-++++|.|+|-+.+.+..+.... +++|.|+--|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999999763 33 6667777777888888999999999999998888888752 56666666555
No 195
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.15 Score=55.37 Aligned_cols=53 Identities=23% Similarity=0.561 Sum_probs=36.8
Q ss_pred CcccCcCccccccCc---eEc-cCcccchHHHHHHHHhcCC--CCCCCccccccccCCc
Q 001690 259 ESLVCPLCNELMEDP---VAI-VCGHSFERKAIQEHFQRGG--KNCPTCRQELLSLDLM 311 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dP---v~~-~cght~c~~ci~~~~~~~~--~~CP~~~~~l~~~~l~ 311 (1028)
-.-.|.||-+.+..- --+ .|||+|.-.|+.+||.... ++||.|+-.+..+.+.
T Consensus 3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 356799996544311 113 5999999999999998543 5899998555544433
No 196
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.11 E-value=4.4 Score=45.88 Aligned_cols=225 Identities=17% Similarity=0.169 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcC-----CCChH
Q 001690 731 EERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTD-----PTKPE 805 (1028)
Q Consensus 731 ~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~-----~~~~~ 805 (1028)
-++.+|..+++-+..+..-.+....-.++...+...|.+. .-...+.+++++.++++ ..++.
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-------------~ln~r~KaawtlgnITdAL~~~~Ps~~ 472 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-------------SLNVRAKAAWSLGNITDALIVNMPTPD 472 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-------------hHhHHHHHHHHhhhhHHHHHcCCCCch
Confidence 3557777776666554333333333444555555555531 23455667777777773 12333
Q ss_pred HHHHHhhcCCHHHHHHHhh---cCCHHHHHHHHHHHHhhhhcccccccccccccccccccCchhhHhhhhhhcccccCCC
Q 001690 806 LQRQVGKLEVYPSLIRVLS---TGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSW 882 (1028)
Q Consensus 806 ~~~~i~~~~~i~~Lv~lL~---s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 882 (1028)
.+..-...-.+.-++++-. .....|+..|..+|+|+++--.. +. +
T Consensus 473 s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~------i~----~---------------------- 520 (728)
T KOG4535|consen 473 SFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP------IE----K---------------------- 520 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH------hh----h----------------------
Confidence 3222111111222233222 23567999999999999864322 10 0
Q ss_pred CCCCCCCccccccCCcccchhhhhcCcchhHHhhhc-CCCccHHHHHHHHHHHhhhcccc-hhhHHHHHHhccchHHHHH
Q 001690 883 GDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLN-DMESGVAEAALTALETLLADHST-LSHAIAVIVDSQGVLAILQ 960 (1028)
Q Consensus 883 ~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~-~~d~~v~~~A~~aL~~L~~d~~~-~~~~~~~i~~~~~i~~l~~ 960 (1028)
-++...+.|.+..+....- ..+-.|+=.|..|++||++++-- .+..-. ...+...|..
T Consensus 521 -----------------~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~w---A~~~F~~L~~ 580 (728)
T KOG4535|consen 521 -----------------PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPW---ASQAFNALTS 580 (728)
T ss_pred -----------------ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCc---hHHHHHHHHH
Confidence 1133444555555544333 56778999999999999976432 111100 1123455666
Q ss_pred HHh-cCChhHHHHHHHHHHHHHhhhhhhhhhhcccchHHHhhccc-------------cchHHHHHHHHHHhccC
Q 001690 961 VLE-KGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDD-------------DALKKKVALVLMQMNII 1021 (1028)
Q Consensus 961 ll~-~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~Lv~~l~~-------------~~~~~~aa~~L~~l~~~ 1021 (1028)
|+. +.|-.+|.+|+.+|..--.-+++.+.|..+-. .||.+|.. +..++.-..+++||-.+
T Consensus 581 Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~-~lv~aLi~s~~~v~f~eY~~~Dsl~~q~c~av~hll~l 654 (728)
T KOG4535|consen 581 LVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWN-ALVTALQKSEDTIDFLEYKYCDSLRTQICQALIHLLSL 654 (728)
T ss_pred HHHHhccceEeehhhhhhcCCCCcccchhHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 78899999999998777666666666655331 22222221 55666666777666443
No 197
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.43 Score=54.38 Aligned_cols=133 Identities=9% Similarity=0.060 Sum_probs=104.7
Q ss_pred HHHHHHhhhch-hhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchh-HHHHHHcCCchhHHHhhcCCCHH
Q 001690 431 IEVLSELTKRE-TLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHF-AVKMAEAGYFQPFVACFNRGSQE 508 (1028)
Q Consensus 431 ~~~L~~Ls~~~-~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~ 508 (1028)
+..|.++|++- -.|.-+.+ ......|+.+|+.++..+.--+...+.|+...-.| ...+.+.|.|..|+.++.+.++.
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d-~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLD-YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccc-cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34455556543 45555666 68999999999987777777888888898766555 55667999999999999988999
Q ss_pred HHHHHHHHHHHhhcCcc--hHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 001690 509 TRALMASALRNMRLDES--SIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAH 564 (1028)
Q Consensus 509 ~~~~a~~~L~~La~~~~--~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~ 564 (1028)
+|.+..|+|+++..+.+ -+-.....-++..++++...+.-.+++++..+|.|+..+
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 99999999999954333 244455566789999999999999999999999999654
No 198
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=1.2 Score=52.85 Aligned_cols=297 Identities=15% Similarity=0.178 Sum_probs=167.2
Q ss_pred hhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHH
Q 001690 461 LHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVI 540 (1028)
Q Consensus 461 L~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv 540 (1028)
|+++++-++-..++.|..|-. + .+++ ..+|.+...|.+.+.-++.+|.-+++.+-...+ .++- . .|-|+
T Consensus 108 LQHPNEyiRG~TLRFLckLkE-~----ELle-pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p-D-apeLi 176 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKE-P----ELLE-PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP-D-APELI 176 (948)
T ss_pred ccCchHhhcchhhhhhhhcCc-H----HHhh-hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC-C-hHHHH
Confidence 456666666666677666621 1 1121 356777778899999999999988887744311 1211 1 24444
Q ss_pred H--HhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHh-ccCCChhHHHHHHHHHHHHHcCCCCCccccc
Q 001690 541 Q--MLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQ-FVRSDPHLKHEAAEILALMVGGCQHPQFELH 617 (1028)
Q Consensus 541 ~--lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~-~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~ 617 (1028)
. ++...++..+++|.-.|... +++ .++..|...+. .++.+..++-.....+...|...+..
T Consensus 177 ~~fL~~e~DpsCkRNAFi~L~~~--D~E---------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~----- 240 (948)
T KOG1058|consen 177 ESFLLTEQDPSCKRNAFLMLFTT--DPE---------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE----- 240 (948)
T ss_pred HHHHHhccCchhHHHHHHHHHhc--CHH---------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----
Confidence 3 44577899999998777653 222 22333333322 22223455566666666666633222
Q ss_pred ccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhc-CCChhHHHHHHHHHHH
Q 001690 618 HGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLD-SDQPVVRRWAMRLIHC 696 (1028)
Q Consensus 618 ~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~-~~~~~v~~~A~~~L~~ 696 (1028)
....+..+..+|.++++.+...|+..|..|+..+...+. +...+++++. .++..++.-..--|..
T Consensus 241 -------~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-------Aa~~~i~l~~kesdnnvklIvldrl~~ 306 (948)
T KOG1058|consen 241 -------KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-------AASTYIDLLVKESDNNVKLIVLDRLSE 306 (948)
T ss_pred -------hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-------HHHHHHHHHHhccCcchhhhhHHHHHH
Confidence 234788999999999999999999999999877754333 3334555543 3333555544444555
Q ss_pred hcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhh--cCCC
Q 001690 697 ISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSM--DGRH 774 (1028)
Q Consensus 697 Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~--~~~~ 774 (1028)
+.. .. .. +-.|.+-.+++.|.+++- +++.-+..+.-.|.. ..-+..++..|+.. ++ .
T Consensus 307 l~~-~~-~~------il~~l~mDvLrvLss~dl-dvr~Ktldi~ldLvs-----------srNvediv~~Lkke~~kT-~ 365 (948)
T KOG1058|consen 307 LKA-LH-EK------ILQGLIMDVLRVLSSPDL-DVRSKTLDIALDLVS-----------SRNVEDIVQFLKKEVMKT-H 365 (948)
T ss_pred Hhh-hh-HH------HHHHHHHHHHHHcCcccc-cHHHHHHHHHHhhhh-----------hccHHHHHHHHHHHHHhc-c
Confidence 541 11 11 123445556777877764 777666665554443 22233344444321 00 0
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCH
Q 001690 775 NGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSS 828 (1028)
Q Consensus 775 ~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~ 828 (1028)
++ .......+...++.++..++. .-|+. .+.++|.|++.+.+.++
T Consensus 366 ~~---e~d~~~~yRqlLiktih~cav-~Fp~~-----aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 366 NE---ESDDNGKYRQLLIKTIHACAV-KFPEV-----AATVVSLLLDFISDSNE 410 (948)
T ss_pred cc---ccccchHHHHHHHHHHHHHhh-cChHH-----HHHHHHHHHHHhccCCH
Confidence 01 011123344556666666653 23443 33568999998887775
No 199
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.93 E-value=0.0074 Score=50.55 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=23.9
Q ss_pred cccCcCcccccc-C---ceEc----cCcccchHHHHHHHHhc--CC--------CCCCCccccccc
Q 001690 260 SLVCPLCNELME-D---PVAI----VCGHSFERKAIQEHFQR--GG--------KNCPTCRQELLS 307 (1028)
Q Consensus 260 ~~~Cpic~~~~~-d---Pv~~----~cght~c~~ci~~~~~~--~~--------~~CP~~~~~l~~ 307 (1028)
+..|+||..... + |+.+ .||++|-..|+.+||.. +. .+||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 578999998654 2 4442 69999999999999973 11 369999988753
No 200
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.011 Score=60.52 Aligned_cols=55 Identities=24% Similarity=0.606 Sum_probs=44.7
Q ss_pred CcccCcCccccccCce----------EccCcccchHHHHHHHHhcCC-CCCCCccccccccCCcCc
Q 001690 259 ESLVCPLCNELMEDPV----------AIVCGHSFERKAIQEHFQRGG-KNCPTCRQELLSLDLMPN 313 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv----------~~~cght~c~~ci~~~~~~~~-~~CP~~~~~l~~~~l~~n 313 (1028)
++-.|.+|.+-+.+.+ .++|+|.|-..||.-|---|+ .+||-|+++.....+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 6788999987666544 589999999999999986554 699999999877666655
No 201
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.77 E-value=0.032 Score=43.01 Aligned_cols=41 Identities=20% Similarity=0.682 Sum_probs=32.4
Q ss_pred cCcCccc--cccCceEccCc-----ccchHHHHHHHHhcC-CCCCCCcc
Q 001690 262 VCPLCNE--LMEDPVAIVCG-----HSFERKAIQEHFQRG-GKNCPTCR 302 (1028)
Q Consensus 262 ~Cpic~~--~~~dPv~~~cg-----ht~c~~ci~~~~~~~-~~~CP~~~ 302 (1028)
.|-||++ .-.+|.+.||. |-+-+.|+.+|+... ..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788986 44578888985 678999999999754 56899984
No 202
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.3 Score=58.60 Aligned_cols=41 Identities=24% Similarity=0.783 Sum_probs=35.5
Q ss_pred CcccCcCccccccCceE-ccCcccchHHHHHHHHhcCCCCCCCccc
Q 001690 259 ESLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQRGGKNCPTCRQ 303 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~~~~~~CP~~~~ 303 (1028)
..-.|..|.-.+.=|++ ..|||+|-+.|++ .+...||.|+.
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 45789999999999988 5999999999997 36788999965
No 203
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.69 E-value=0.063 Score=49.58 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=61.5
Q ss_pred CcchhHHhhhc-CCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhh
Q 001690 908 DAVKPLVRNLN-DMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKH 983 (1028)
Q Consensus 908 gai~~Lv~lL~-~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~ 983 (1028)
..++.|+++|. +.|+.+...|+.=|+.++.- ...|...+.+.||-..+.+|+.|+|++++..|+-+++++...
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~---~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH---YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHH---ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 46889999994 67888888899999999854 346788899999999999999999999999999999998753
No 204
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=8.3 Score=46.55 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC-CchhHHHHHHHHhhh--chhhhhhhhcccchHHHHHH
Q 001690 383 TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG-ETMPEAIEVLSELTK--RETLGEKIGNTKDCITIMVS 459 (1028)
Q Consensus 383 ~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~-e~~~~A~~~L~~Ls~--~~~~~~~i~~~~g~I~~Lv~ 459 (1028)
+.-+|.+|+..|+.+-.++ | -++..++..+..+ -.-..|-+.+-.... .+++ .-+. .-..+.|=.
T Consensus 185 ~~m~QyHalglLyqirk~d---r------la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~--~~~~-s~~~~fl~s 252 (865)
T KOG1078|consen 185 NIMVQYHALGLLYQIRKND---R------LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN--QQAD-SPLFPFLES 252 (865)
T ss_pred HHHHHHHHHHHHHHHHhhh---H------HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc--ccch-hhHHHHHHH
Confidence 5568899999998887655 1 2344455555444 112222222222211 1111 1111 234555566
Q ss_pred HhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 001690 460 LLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLD 523 (1028)
Q Consensus 460 lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 523 (1028)
.|++..+.+...|+.++.+|..... ..+.. ++..|--++++....+|..|..+|..++..
T Consensus 253 ~l~~K~emV~~EaArai~~l~~~~~--r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 253 CLRHKSEMVIYEAARAIVSLPNTNS--RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred HHhchhHHHHHHHHHHHhhccccCH--hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 6677788888899999888854322 22222 566777778899999999999999998653
No 205
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.56 E-value=0.018 Score=62.11 Aligned_cols=49 Identities=27% Similarity=0.582 Sum_probs=41.0
Q ss_pred ccCcCccccccCceEccCcccchHHHHHHHHhcC-CCCCCCccccccccC
Q 001690 261 LVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRG-GKNCPTCRQELLSLD 309 (1028)
Q Consensus 261 ~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~-~~~CP~~~~~l~~~~ 309 (1028)
-.|.||-+-=+|--+=+|||-.|..|+..|-... ..+||.||-.+.-++
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 3599999987886677999999999999998543 679999999886654
No 206
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.55 E-value=8.8 Score=42.99 Aligned_cols=209 Identities=11% Similarity=0.135 Sum_probs=147.0
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCc-hh-----HHHHHHcCCchhHHHhh--cCCCHHHHHHHHHHHHHhhc
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNT-HF-----AVKMAEAGYFQPFVACF--NRGSQETRALMASALRNMRL 522 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~-~n-----~~~i~~~G~v~~Lv~lL--~~~~~~~~~~a~~~L~~La~ 522 (1028)
.+.+..|+..|..-+-+.+++++.+..++.... ++ ...+. ... |-++..| .-+++++-..+...|..+..
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~-peil~~L~~gy~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHR-PEILDILLRGYENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T---THHHHHHHHGGGSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCC-HHHHHHHHHHhcCccccchHHHHHHHHHh
Confidence 588999999999999999999999999986553 12 22222 221 2233333 23456677788888999998
Q ss_pred CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHH-hcCCHhHHHHHhC--CCcHHHHHHHHhccCCChhHHHHHH
Q 001690 523 DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTL-IAHSKMVKHLLLD--PATIPLLLGLIQFVRSDPHLKHEAA 599 (1028)
Q Consensus 523 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL-~~~~~~~~~lv~~--~g~v~~L~~lL~~~~~~~~l~~~a~ 599 (1028)
++.-...+.....+-.+.+.+..++-++...|..++..| ..+.......+.. ...+.....+|.+++ -..++.+.
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N--Yvtkrqsl 230 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN--YVTKRQSL 230 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS--HHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC--eEeehhhH
Confidence 888888888888889999999999999999999999886 4444454554433 124667777887654 57789999
Q ss_pred HHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC---HHHHHHHHh
Q 001690 600 EILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS---EKVRNLIES 667 (1028)
Q Consensus 600 ~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~---~~~~~~i~~ 667 (1028)
..|..+-....+... ....+.+..-+..++.+|++.+..+|..|..++--...++ +.+..++..
T Consensus 231 kLL~ellldr~n~~v----m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 231 KLLGELLLDRSNFNV----MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK 297 (335)
T ss_dssp HHHHHHHHSGGGHHH----HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH
T ss_pred HHHHHHHHchhHHHH----HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 999999885543332 2356677778999999999999999999999887777666 555555443
No 207
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=9.7 Score=47.01 Aligned_cols=477 Identities=12% Similarity=0.098 Sum_probs=247.1
Q ss_pred hHHHHHHH-hhcCChhhHHHHHHHHhcc-ccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHh----hcCcch
Q 001690 453 CITIMVSL-LHNNNPNLSQKAHDVLQNL-SHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNM----RLDESS 526 (1028)
Q Consensus 453 ~I~~Lv~l-L~~~~~~~~~~a~~~L~nL-~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L----a~~~~~ 526 (1028)
++..|-.. |++.+.+.+...+..++.+ +.+++|....-+.--+|.|+.-+..-...+|...+.+|-.- ...|+
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPe- 545 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPE- 545 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcH-
Confidence 44444333 3467777777777777776 45567766666677888888888666666666555544321 11111
Q ss_pred HHHHhhCCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCC--ChhHHHHHHHHHH
Q 001690 527 IKTLKDRQFIHNVIQMLSSNSP-VCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS--DPHLKHEAAEILA 603 (1028)
Q Consensus 527 ~~~i~~~g~i~~Lv~lL~s~~~-~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~--~~~l~~~a~~~L~ 603 (1028)
++ +-.|.-+|+.+-. ..+..-+.....|-+.+...+++.++-|++..|...++...- .+. .-..+..
T Consensus 546 qE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd---qysgvse 615 (2799)
T KOG1788|consen 546 QE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD---QYSGVSE 615 (2799)
T ss_pred HH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc---hhhhHHH
Confidence 11 1233345554432 223333344444444555555556555999999888875210 000 0001000
Q ss_pred HHHcCCCCCcccccccchhhcccccHHHHHHHhcCCC--HHHHH------HHHHHHHHhhcCCHHHHHHHHhhhchHHHH
Q 001690 604 LMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTE--RETKI------QFLHLLVKLCYKSEKVRNLIESNNDAITQL 675 (1028)
Q Consensus 604 nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~--~~~~~------~a~~aL~~L~~~~~~~~~~i~~~~g~v~~L 675 (1028)
.--+...+.. ..+.+....++..--.+.++++ ..+.+ ..-.+|..+..++....+.+++ +.|+..+
T Consensus 616 hydrnpss~s-----f~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFre-anGvkli 689 (2799)
T KOG1788|consen 616 HYDRNPSSPS-----FKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFRE-ANGVKLI 689 (2799)
T ss_pred HhhcCCCCch-----hhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHh-hcCceEE
Confidence 0001111000 0111222222211112222211 11111 1234677778888888999999 8999999
Q ss_pred HhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCC-----------HHHHHHHHHHHhcCC
Q 001690 676 FSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPD-----------VEERSLAAGIISQLP 744 (1028)
Q Consensus 676 v~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~-----------~~~~~~a~~~L~nL~ 744 (1028)
+.++ -+++-|..-.+++.+|-- .+... ++..-+..+|..|.++.. .....+-+|++..+.
T Consensus 690 lpfl--indehRSslLrivscLit-vdpkq------vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwriv 760 (2799)
T KOG1788|consen 690 LPFL--INDEHRSSLLRIVSCLIT-VDPKQ------VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIV 760 (2799)
T ss_pred EEee--echHHHHHHHHHHHHHhc-cCccc------ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9888 344567777778887762 22111 233568889998888531 134466788888887
Q ss_pred CCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhc---CCCChHHHHHHhhcCCHHHHHH
Q 001690 745 KDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFT---DPTKPELQRQVGKLEVYPSLIR 821 (1028)
Q Consensus 745 ~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~---~~~~~~~~~~i~~~~~i~~Lv~ 821 (1028)
.-|-..++.+.++|++..|..+|..-+. -+.-....+..+.-.....+.++- ...|+..+..+-..-.-..+..
T Consensus 761 gvngsaqrvFgeatGFslLlttLhtfqg---ftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtfts 837 (2799)
T KOG1788|consen 761 GVNGSAQRVFGEATGFSLLLTTLHTFQG---FTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTS 837 (2799)
T ss_pred ccCchheeehhccccHHHHHHHHHHhcc---chhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHH
Confidence 7677788899999999999999885321 011111111222222334444422 1123333222222222235666
Q ss_pred HhhcCC---HHHHHHHHHHHHhhhhcccc---cccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCcccccc
Q 001690 822 VLSTGS---SLAKQRAASALADLSQSTSV---SVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAA 895 (1028)
Q Consensus 822 lL~s~~---~~vk~~Aa~aL~~ls~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~ 895 (1028)
||+..+ ...-+.....|..++-.+-. ..+..+.+...++ +=...| +.....|.
T Consensus 838 LLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfe----------lednif-----------avntPsGq 896 (2799)
T KOG1788|consen 838 LLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFE----------LEDNIF-----------AVNTPSGQ 896 (2799)
T ss_pred HHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhh----------ccccee-----------eeccCCCC
Confidence 666332 12222233333333221110 0000001100000 000000 00000000
Q ss_pred CCcccc-hhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHh---cCChhHHH
Q 001690 896 CSPRET-FCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLE---KGSLSAKT 971 (1028)
Q Consensus 896 ~~~~~~-~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~---~~~~~~~~ 971 (1028)
+.+. ..+..+|++..|++.+-..-++.+..-+.-+..+++-.. -+...+...|-+..+++++. +|+...-.
T Consensus 897 --fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRasp---fnaelltS~gcvellleIiypflsgsspfLs 971 (2799)
T KOG1788|consen 897 --FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASP---FNAELLTSAGCVELLLEIIYPFLSGSSPFLS 971 (2799)
T ss_pred --cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCC---CchhhhhcccHHHHHHHHhhhhhcCCchHhh
Confidence 0011 135689999999998888788888777777776665433 23456667788888888877 77788888
Q ss_pred HHHHHHHHHHhhh
Q 001690 972 KALDLFQMIQKHT 984 (1028)
Q Consensus 972 ~A~~~l~~~~~~~ 984 (1028)
.|..+++.+...+
T Consensus 972 halkIvemLgayr 984 (2799)
T KOG1788|consen 972 HALKIVEMLGAYR 984 (2799)
T ss_pred ccHHHHHHHhhcc
Confidence 8888888887544
No 208
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.022 Score=62.72 Aligned_cols=50 Identities=28% Similarity=0.487 Sum_probs=40.4
Q ss_pred CCcccCcCccccccCce-----E---ccCcccchHHHHHHHHhcC------CCCCCCccccccc
Q 001690 258 IESLVCPLCNELMEDPV-----A---IVCGHSFERKAIQEHFQRG------GKNCPTCRQELLS 307 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv-----~---~~cght~c~~ci~~~~~~~------~~~CP~~~~~l~~ 307 (1028)
-.+..|-||++.-.+++ . .+|-|+||..||..|-... .+.||.||.+...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 36899999999888876 3 4699999999999998432 3789999987643
No 209
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.29 E-value=13 Score=43.27 Aligned_cols=192 Identities=18% Similarity=0.212 Sum_probs=112.9
Q ss_pred CchhHHHhh-cCCCHHHHHHHHHHHHHhhcC-cchHHHHhhCCcHHHHHHHh-cCCCHHHHHHH----HHHHHHHhcCC-
Q 001690 494 YFQPFVACF-NRGSQETRALMASALRNMRLD-ESSIKTLKDRQFIHNVIQML-SSNSPVCKSAC----LKCIKTLIAHS- 565 (1028)
Q Consensus 494 ~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL-~s~~~~~~~~A----~~aL~nL~~~~- 565 (1028)
.+..++.+. ...++..+..++..|+.|..- +... . . ...+..+..-+ .......+..+ +|+...|....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~-l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-D-L-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-h-H-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 455566665 444567777777888877532 1111 0 0 11233333333 22333334444 44444443332
Q ss_pred HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcc-cccccchhhccc----ccHHHHHHHhcCCC
Q 001690 566 KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQF-ELHHGLQELQSE----HNVNVFLQLIANTE 640 (1028)
Q Consensus 566 ~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~-~~~~~~~~l~~~----g~v~~Lv~lL~~~~ 640 (1028)
+... ..+..|++++.+ ..+...++..+.-+.....+.-. ..+-.++.+... ..+|.|++-.+..+
T Consensus 267 ~~~~------~~~~~L~~lL~~----~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 267 PLAT------ELLDKLLELLSS----PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD 336 (415)
T ss_pred chHH------HHHHHHHHHhCC----hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC
Confidence 2211 246667777765 24557788878888775221111 011123344443 35778888888888
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001690 641 RETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISE 699 (1028)
Q Consensus 641 ~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~ 699 (1028)
...+.+.+.+|..+..+-+...-.-.- ...+|.|++-|..++.+++..+..+|..+..
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 789999999999998876533222222 4678888888999999999999999999884
No 210
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.29 E-value=0.026 Score=61.99 Aligned_cols=51 Identities=29% Similarity=0.546 Sum_probs=45.0
Q ss_pred ccCcCccccccCceEc-cCcccchHHHHHHHHhcCCCCCCCccccccccCCcC
Q 001690 261 LVCPLCNELMEDPVAI-VCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP 312 (1028)
Q Consensus 261 ~~Cpic~~~~~dPv~~-~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 312 (1028)
+.|.|+.++-.+||+- -+||.|+|+-|++++. .+.+||++++++...+++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~-e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA-ETGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHH-HcCCCCCCCCcCCHHHeee
Confidence 4699999999999986 5999999999999997 5668999999998877655
No 211
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.21 E-value=8.7 Score=40.57 Aligned_cols=239 Identities=15% Similarity=0.168 Sum_probs=133.8
Q ss_pred chhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCHhHHHHH
Q 001690 495 FQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSS--NSPVCKSACLKCIKTLIAHSKMVKHLL 572 (1028)
Q Consensus 495 v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nL~~~~~~~~~lv 572 (1028)
+..+.+...+++...+.+.+.+|+ ......++|.|+..|.. ..|-+|..|+.+|.++...
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~Lg----------Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~-------- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLG----------QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP-------- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhh----------hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcch--------
Confidence 444444444444445555555554 23345578888887763 4467788888888876521
Q ss_pred hCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHH
Q 001690 573 LDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLV 652 (1028)
Q Consensus 573 ~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~ 652 (1028)
+.++.|-+..+.+. ..+++.+..++..+--.... ...-...++.+ ..+.|
T Consensus 100 ---~~~~~l~k~~~dp~--~~v~ETc~lAi~rle~~~~~------------~~~~~~~p~~S--vdPa~----------- 149 (289)
T KOG0567|consen 100 ---ESLEILTKYIKDPC--KEVRETCELAIKRLEWKDII------------DKIANSSPYIS--VDPAP----------- 149 (289)
T ss_pred ---hhHHHHHHHhcCCc--cccchHHHHHHHHHHHhhcc------------ccccccCcccc--CCCCC-----------
Confidence 45556666663322 45556555555555432110 00000001111 00101
Q ss_pred HhhcCCHHHHHHHHhhhchHHHHHh-hhcCCChhH-HHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCH
Q 001690 653 KLCYKSEKVRNLIESNNDAITQLFS-SLDSDQPVV-RRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDV 730 (1028)
Q Consensus 653 ~L~~~~~~~~~~i~~~~g~v~~Lv~-Ll~~~~~~v-~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~ 730 (1028)
+ . . .+-+..|-. ++....+.. |..|...|+|+- ++.+|..|+.-+..++ .
T Consensus 150 ------p-----~-~-~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--------------~EeaI~al~~~l~~~S-a 201 (289)
T KOG0567|consen 150 ------P-----A-N-LSSVHELRAELLDETKPLFERYRAMFYLRNIG--------------TEEAINALIDGLADDS-A 201 (289)
T ss_pred ------c-----c-c-cccHHHHHHHHHhcchhHHHHHhhhhHhhccC--------------cHHHHHHHHHhcccch-H
Confidence 1 0 0 122333333 333333333 444444444443 2356888888888774 4
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHH
Q 001690 731 EERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQV 810 (1028)
Q Consensus 731 ~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i 810 (1028)
-.+..++.+++.|-. .-+||.|...|....+ .+-+...++-||..++
T Consensus 202 lfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E-----------~pMVRhEaAeALGaIa----------- 248 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETE-----------HPMVRHEAAEALGAIA----------- 248 (289)
T ss_pred HHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhc-----------chHHHHHHHHHHHhhc-----------
Confidence 788889999887643 3468888888885321 3555566777776655
Q ss_pred hhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001690 811 GKLEVYPSLIRVLSTGSSLAKQRAASALADLSQ 843 (1028)
Q Consensus 811 ~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~ 843 (1028)
+...+++|.+.+...++.|+..+..+|-.+-.
T Consensus 249 -~e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 249 -DEDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred -CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 33447788899988899999999999876644
No 212
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.032 Score=56.54 Aligned_cols=37 Identities=30% Similarity=0.274 Sum_probs=32.9
Q ss_pred CCCCcccCcCccccccCceEccCcccchHHHHHHHHh
Q 001690 256 YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQ 292 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~ 292 (1028)
.+.+.-+|.+|++.++|||+.+-||.|||.||.+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3445678999999999999999999999999999874
No 213
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.09 E-value=0.051 Score=45.00 Aligned_cols=45 Identities=33% Similarity=0.611 Sum_probs=34.1
Q ss_pred ccCcCccccccC----ceEc-cCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 261 LVCPLCNELMED----PVAI-VCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 261 ~~Cpic~~~~~d----Pv~~-~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
-.||-|.--|.. ||.. -|.|.|--.||.+|++. ...||.++++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 456666654421 4554 69999999999999985 678999999864
No 214
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.03 Score=60.68 Aligned_cols=47 Identities=26% Similarity=0.473 Sum_probs=39.8
Q ss_pred cccCcCccccccCceEccCcccc-hHHHHHHHHhcCCCCCCCccccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSF-ERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~-c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
--.|-||+.--+|-+++||.|.. |..|-+..- -.+..||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 57899999999999999999976 999987643 356789999998753
No 215
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.95 E-value=0.045 Score=41.45 Aligned_cols=43 Identities=33% Similarity=0.797 Sum_probs=22.4
Q ss_pred CcCcccccc--CceEc--cCcccchHHHHHHHHhcCCCCCCCccccc
Q 001690 263 CPLCNELME--DPVAI--VCGHSFERKAIQEHFQRGGKNCPTCRQEL 305 (1028)
Q Consensus 263 Cpic~~~~~--dPv~~--~cght~c~~ci~~~~~~~~~~CP~~~~~l 305 (1028)
||+|.+.|. |--.. +||+-.|+.|..+....++..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988773 22233 68999999999888876778999999864
No 216
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.91 E-value=0.014 Score=67.99 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=41.4
Q ss_pred CCcccCcCccccccCceE---ccCcccchHHHHHHHHhcCCCCCCCcccccccc
Q 001690 258 IESLVCPLCNELMEDPVA---IVCGHSFERKAIQEHFQRGGKNCPTCRQELLSL 308 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~---~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~ 308 (1028)
...-.||+|+.-+.|-.+ ..|+|-||..||..|-+ ...+||.||..+...
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhee
Confidence 567789999988887665 47999999999999986 567999999887653
No 217
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.89 E-value=0.022 Score=69.07 Aligned_cols=51 Identities=25% Similarity=0.638 Sum_probs=43.0
Q ss_pred ccCcCccccccCceEccCcccchHHHHHHHHhcCC-CCCCCccccccccCCcC
Q 001690 261 LVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGG-KNCPTCRQELLSLDLMP 312 (1028)
Q Consensus 261 ~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~-~~CP~~~~~l~~~~l~~ 312 (1028)
+.|++|.+ ..+|+++.|||.||+.|+.+-++..+ ..||.|+..+....+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 89999999 78889999999999999999887544 46999998887755433
No 218
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.76 E-value=3 Score=46.66 Aligned_cols=198 Identities=15% Similarity=0.229 Sum_probs=142.7
Q ss_pred HHhhccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHH-HHHH--hchhHHHHHhhccC----CchhHHHHHHHHhh
Q 001690 367 AAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKE-AIVE--AGAVRRIVKQICKG----ETMPEAIEVLSELT 438 (1028)
Q Consensus 367 i~~~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~-~i~~--~g~i~~lv~~L~~~----e~~~~A~~~L~~Ls 438 (1028)
+...+.++.|+..|.. +-+.|..+..+..++-....+++. -.++ ....+.++..|-.| +.--.+-..|++..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 4457889999999988 999999999998888665423332 1111 22224455555554 66677778899999
Q ss_pred hchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhcc-ccCchhHHHHHHcC---CchhHHHhhcCCCHHHHHHHH
Q 001690 439 KRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNL-SHNTHFAVKMAEAG---YFQPFVACFNRGSQETRALMA 514 (1028)
Q Consensus 439 ~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL-~~~~~n~~~i~~~G---~v~~Lv~lL~~~~~~~~~~a~ 514 (1028)
+.+.....|.. ...+..+....+.++-++..+|..++..+ ..++.-.......+ .+...-.+|.+++=-++..++
T Consensus 152 k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 152 KHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp TSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred hhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 99988888888 68999999999999999999999999985 44454445555443 345677788999999999999
Q ss_pred HHHHHhhcCcchHHHHhh----CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 001690 515 SALRNMRLDESSIKTLKD----RQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHS 565 (1028)
Q Consensus 515 ~~L~~La~~~~~~~~i~~----~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~ 565 (1028)
..|+.|-.+..+...+.+ ..-+..++.+|++.+..++..|..+..-...+|
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 999999777777655433 344777888999999999999998887766654
No 219
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=25 Score=44.70 Aligned_cols=220 Identities=15% Similarity=0.166 Sum_probs=126.4
Q ss_pred cCChhhHHHHHHHHhccccCchhHHHHHHc--CCchhHHHhhcCCCHHHHHHHHHHHHHhh-c-CcchHHHHhhCCcHHH
Q 001690 463 NNNPNLSQKAHDVLQNLSHNTHFAVKMAEA--GYFQPFVACFNRGSQETRALMASALRNMR-L-DESSIKTLKDRQFIHN 538 (1028)
Q Consensus 463 ~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~--G~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~-~~~~~~~i~~~g~i~~ 538 (1028)
+.+..+|..+...|..++..+......... .+...|..-+.+-+...+.....+|..|- . +.+....+.. .||-
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHH
Confidence 346788889999999888774322222211 12223444444444556666667776662 2 2344444433 3555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhC-----CCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCc
Q 001690 539 VIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLD-----PATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQ 613 (1028)
Q Consensus 539 Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~-----~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~ 613 (1028)
++-.++..+...+++|..+|.+++.. ...... ...+...+..+..+.......-.+.. |..+..--.++
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~- 816 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAI----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEF- 816 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHH----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHH-
Confidence 55555778888999999999999831 111111 02556666666655222222222222 33222210011
Q ss_pred ccccccchhhccccc----HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHH
Q 001690 614 FELHHGLQELQSEHN----VNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRW 689 (1028)
Q Consensus 614 ~~~~~~~~~l~~~g~----v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~ 689 (1028)
..+.+.+. +..+..+|.+.++++...|++.+..++..-+...-.-.. ...++.+..+++.....++..
T Consensus 817 -------~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 817 -------KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred -------hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHH
Confidence 12333344 444455577999999999999998888766433322222 357788888887777788888
Q ss_pred HHHHHHHhc
Q 001690 690 AMRLIHCIS 698 (1028)
Q Consensus 690 A~~~L~~Ls 698 (1028)
.-.+|-.|.
T Consensus 889 vr~LlekLi 897 (1176)
T KOG1248|consen 889 VRLLLEKLI 897 (1176)
T ss_pred HHHHHHHHH
Confidence 888887776
No 220
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=28 Score=45.49 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=91.7
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHH--hchhHHHHHhhccC--CchhHHHHHHHHhhhchhhhhhh
Q 001690 373 IPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVE--AGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEKI 447 (1028)
Q Consensus 373 ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~--~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i 447 (1028)
||.|.+.=.. +..+|..-..+=..|..+. |..+-+ ...+..++.-|.+. .+|+.++-+|..|-..+..-...
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~---k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDS---KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3444443333 5555544333333344433 344433 34455566666655 88999999999996644333333
Q ss_pred hcccchHHHHHHHhhcCChhhHH---HHHHHHhccccC-----chhHHHHHHcCCchhHHH--hhcCCCHHHHHHHHHHH
Q 001690 448 GNTKDCITIMVSLLHNNNPNLSQ---KAHDVLQNLSHN-----THFAVKMAEAGYFQPFVA--CFNRGSQETRALMASAL 517 (1028)
Q Consensus 448 ~~~~g~I~~Lv~lL~~~~~~~~~---~a~~~L~nL~~~-----~~n~~~i~~~G~v~~Lv~--lL~~~~~~~~~~a~~~L 517 (1028)
-..+.....+.+...+-.+.+++ .++.+|..|+.. +..+..-+-..++|.|+. .+ +.-++++.-+..++
T Consensus 1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTL 1155 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHH
Confidence 22223333344444333334444 455666666532 112222222335666554 23 66788999999999
Q ss_pred HHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHH
Q 001690 518 RNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVC 550 (1028)
Q Consensus 518 ~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~ 550 (1028)
..|+.+....-.-.-...||.|+...+.-.+.+
T Consensus 1156 ~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1156 MDLAKSSGKELKPHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred HHHHHhchhhhcchhhHHHHHHHHHccccchHH
Confidence 999765443222222345777777776544443
No 221
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.67 E-value=0.064 Score=41.57 Aligned_cols=45 Identities=29% Similarity=0.586 Sum_probs=24.2
Q ss_pred cccCcCccccccCceE-ccCccc--chH-HHHHHHHhcCCCCCCCcccc
Q 001690 260 SLVCPLCNELMEDPVA-IVCGHS--FER-KAIQEHFQRGGKNCPTCRQE 304 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~-~~cght--~c~-~ci~~~~~~~~~~CP~~~~~ 304 (1028)
.+.|||+...|.-|+. ..|.|. |+- ..|+...+.+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3789999999999997 589996 444 33333334456789999864
No 222
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.66 E-value=1 Score=46.58 Aligned_cols=144 Identities=14% Similarity=0.190 Sum_probs=104.4
Q ss_pred hhHHHHHHHHhhhchhhhhhhhcccchHHH-HHHHhh-----cCChhhHHHHHHHHhccccCc--hhHHHHHHcCCchhH
Q 001690 427 MPEAIEVLSELTKRETLGEKIGNTKDCITI-MVSLLH-----NNNPNLSQKAHDVLQNLSHNT--HFAVKMAEAGYFQPF 498 (1028)
Q Consensus 427 ~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~-Lv~lL~-----~~~~~~~~~a~~~L~nL~~~~--~n~~~i~~~G~v~~L 498 (1028)
.-+|...|..++.+++.+..+.+ .-||. |-.+|. ...+-.+..+++++..|..++ +-...+...++||..
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~--A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLR--AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHH--ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 45677777778888888887765 22332 333333 234566778888888887654 345556688999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhC----CcH----HHH-HHHhcCCCHHHHHHHHHHHHHHhcCCHhHH
Q 001690 499 VACFNRGSQETRALMASALRNMRLDESSIKTLKDR----QFI----HNV-IQMLSSNSPVCKSACLKCIKTLIAHSKMVK 569 (1028)
Q Consensus 499 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~----g~i----~~L-v~lL~s~~~~~~~~A~~aL~nL~~~~~~~~ 569 (1028)
++.+..|++..+.-|+.++..+-.++.+-..+.+. -+| ..+ ..+.+.+++...++++++..+|+.++..+.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999998888877766541 122 222 334557899999999999999999987666
Q ss_pred HHH
Q 001690 570 HLL 572 (1028)
Q Consensus 570 ~lv 572 (1028)
.+-
T Consensus 254 aL~ 256 (293)
T KOG3036|consen 254 ALR 256 (293)
T ss_pred HHH
Confidence 544
No 223
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.036 Score=45.41 Aligned_cols=48 Identities=29% Similarity=0.587 Sum_probs=36.2
Q ss_pred CcccCcCccccccC-ceEc-cCcccchHHHHHHHHhcC--CCCCCCcccccc
Q 001690 259 ESLVCPLCNELMED-PVAI-VCGHSFERKAIQEHFQRG--GKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~~~d-Pv~~-~cght~c~~ci~~~~~~~--~~~CP~~~~~l~ 306 (1028)
-+-.||-|.-.-.| |.+. -|.|.|-..||.+|+... ...||.||+...
T Consensus 30 Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 30 FDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 35667777655444 6555 699999999999999743 368999999764
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.45 E-value=1.7 Score=54.53 Aligned_cols=253 Identities=20% Similarity=0.196 Sum_probs=147.6
Q ss_pred CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccC----chhHHHHHHcCCchhHHH
Q 001690 425 ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHN----THFAVKMAEAGYFQPFVA 500 (1028)
Q Consensus 425 e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~----~~n~~~i~~~G~v~~Lv~ 500 (1028)
+.+..|+..|..||..-.--..+ ...+|-+|.++.+.+.+++..|+.+|..+... +.+-..+.-.=.+|.|-.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 77889999999998743333333 46899999999999999999999888776421 222222333336777777
Q ss_pred hhcC-CCHHHHHHHHHHHHHhhcCc----chHHHHhhCC------------------------cHH-HHHHHhcCCCHHH
Q 001690 501 CFNR-GSQETRALMASALRNMRLDE----SSIKTLKDRQ------------------------FIH-NVIQMLSSNSPVC 550 (1028)
Q Consensus 501 lL~~-~~~~~~~~a~~~L~~La~~~----~~~~~i~~~g------------------------~i~-~Lv~lL~s~~~~~ 550 (1028)
++.+ ...-++..-|..|+.||... +....+.+.| .|. ..+.+|..+.+-+
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~V 594 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIV 594 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHH
Confidence 7766 33445554455555543211 1111111111 111 1223444444555
Q ss_pred HHHHHHHHHHHhcC-CHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccH
Q 001690 551 KSACLKCIKTLIAH-SKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNV 629 (1028)
Q Consensus 551 ~~~A~~aL~nL~~~-~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v 629 (1028)
|..-+..|.-||.. ...+ -.+ =.++.|+.+|... +..++..- +-++..-+. . -...-.+++.+
T Consensus 595 kr~Lle~i~~LC~FFGk~k---sND-~iLshLiTfLNDk--Dw~LR~aF---fdsI~gvsi---~----VG~rs~seyll 658 (1431)
T KOG1240|consen 595 KRALLESIIPLCVFFGKEK---SND-VILSHLITFLNDK--DWRLRGAF---FDSIVGVSI---F----VGWRSVSEYLL 658 (1431)
T ss_pred HHHHHHHHHHHHHHhhhcc---ccc-chHHHHHHHhcCc--cHHHHHHH---HhhccceEE---E----EeeeeHHHHHH
Confidence 55555555555542 0000 001 2466666776543 23332222 222222110 0 01122577888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001690 630 NVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISE 699 (1028)
Q Consensus 630 ~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~ 699 (1028)
|.|..-|..+.+.+...|+++|..|+...---+..+. +.++....||-+++.-+|..++..+....+
T Consensus 659 PLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~---~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 659 PLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK---DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH---HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999876622122222 345556678889999999999998887774
No 225
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.31 E-value=0.11 Score=35.86 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001690 816 YPSLIRVLSTGSSLAKQRAASALADLSQ 843 (1028)
Q Consensus 816 i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~ 843 (1028)
+|.+++++++.+++||..|+.+|..+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999875
No 226
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.26 E-value=0.054 Score=57.30 Aligned_cols=51 Identities=29% Similarity=0.548 Sum_probs=38.0
Q ss_pred CcccCcCcccccc--CceE--ccCcccchHHHHHHHHhcCCCCCCCccccccccCC
Q 001690 259 ESLVCPLCNELME--DPVA--IVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDL 310 (1028)
Q Consensus 259 ~~~~Cpic~~~~~--dPv~--~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l 310 (1028)
+++ ||+|.+.|. |--. -+||...|+.|.-..-+.-+..||.||......++
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 455 999999885 3222 46888889999876655556789999998876653
No 227
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.14 E-value=0.038 Score=42.81 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=37.6
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccC
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLD 309 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~ 309 (1028)
.+..|-.|...-...++++|||-.|+.|..-+ ...-||.|+.++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 45667778887788889999999999996543 3467999999986543
No 228
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.06 E-value=0.27 Score=44.17 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=51.4
Q ss_pred cchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHH-hccchHHHHHHHhcCChhHHHHHHHHHHHHHh
Q 001690 909 AVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIV-DSQGVLAILQVLEKGSLSAKTKALDLFQMIQK 982 (1028)
Q Consensus 909 ai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~-~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~ 982 (1028)
.++|++..+.++|.+||..|.++|.++...... .++. =....+.|.+++...++++|.-| +.|.++++
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-----~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARG-----EILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 589999999999999999999999999854321 1111 12355677788888888986555 78888875
No 229
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.02 E-value=2.2 Score=45.13 Aligned_cols=190 Identities=11% Similarity=0.132 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHH-hchhHHHHHhhcc-------C-------CchhHHHHHHHHhhhchhhhhhh
Q 001690 383 TRLSTEAILKCLYFLAKYSDIHKEAIVE-AGAVRRIVKQICK-------G-------ETMPEAIEVLSELTKRETLGEKI 447 (1028)
Q Consensus 383 ~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-~g~i~~lv~~L~~-------~-------e~~~~A~~~L~~Ls~~~~~~~~i 447 (1028)
+++.|+.|+.-|..--..-++.--.+-+ .|.+..+.+-+-+ . .-.-+|++.|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5666766555444333222122222222 5666665543322 1 23456777788889999999988
Q ss_pred hcccchHHHHHHHhhcC-----ChhhHHHHHHHHhccccCc--hhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHh
Q 001690 448 GNTKDCITIMVSLLHNN-----NPNLSQKAHDVLQNLSHNT--HFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNM 520 (1028)
Q Consensus 448 ~~~~g~I~~Lv~lL~~~-----~~~~~~~a~~~L~nL~~~~--~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L 520 (1028)
.+ ....--|.-+|+.. -+..+....+++..|...+ +....+.+..+||..++.+..|++-.|.-|..++.++
T Consensus 88 l~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77 45544555556532 2456667778888887643 4566667889999999999999999999999999999
Q ss_pred hcCcchHHHHhhC--------CcHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHh
Q 001690 521 RLDESSIKTLKDR--------QFIHNVIQ-MLSSNSPVCKSACLKCIKTLIAHSKMVKHLLL 573 (1028)
Q Consensus 521 a~~~~~~~~i~~~--------g~i~~Lv~-lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~ 573 (1028)
-.++.+-..+.+. .++..+|. +...++++.-++.+++-..|+.++..+..+.+
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7777777776542 12333333 34578899999999999999999877766554
No 230
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.11 Score=56.46 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=36.7
Q ss_pred CCCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 256 YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
+.|..-.|-||.+-..+-+.+||||..| |+.-.. ....||+||+.+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 3456788999999999999999999988 654322 3456999999874
No 231
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.71 E-value=0.045 Score=65.33 Aligned_cols=49 Identities=27% Similarity=0.732 Sum_probs=37.5
Q ss_pred CCcccCcCcccccc--C---ceE--ccCcccchHHHHHHHHhcC-CCCCCCcccccc
Q 001690 258 IESLVCPLCNELME--D---PVA--IVCGHSFERKAIQEHFQRG-GKNCPTCRQELL 306 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~--d---Pv~--~~cght~c~~ci~~~~~~~-~~~CP~~~~~l~ 306 (1028)
...-.|+||.-++. | |-- -.|.|.|...|+.+||+.+ ..+||.||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 35567999998765 2 332 3588999999999999864 479999997654
No 232
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.08 Score=58.22 Aligned_cols=46 Identities=30% Similarity=0.801 Sum_probs=38.6
Q ss_pred CcccCcCccccccC---ceEccCcccchHHHHHHHHhcCC--CCCCCcccc
Q 001690 259 ESLVCPLCNELMED---PVAIVCGHSFERKAIQEHFQRGG--KNCPTCRQE 304 (1028)
Q Consensus 259 ~~~~Cpic~~~~~d---Pv~~~cght~c~~ci~~~~~~~~--~~CP~~~~~ 304 (1028)
.-|.|||..+--+| |+.+.|||.-|+..+.+..+.|. ..||-|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 34899999986654 88899999999999999988777 789999543
No 233
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.57 E-value=1.9 Score=52.72 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=109.8
Q ss_pred hhcCChhhHHHHH-HHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHH
Q 001690 461 LHNNNPNLSQKAH-DVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNV 539 (1028)
Q Consensus 461 L~~~~~~~~~~a~-~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~L 539 (1028)
+.+.+...+.+|+ .++..++.+++- .-..|-+++...+.+.+++...=-.|-+.+........+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 4555566666666 455566555441 113445566556777787776666666665443322222 46677
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCccccccc
Q 001690 540 IQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHG 619 (1028)
Q Consensus 540 v~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~ 619 (1028)
.+=+.++++.+|-.|++++..|-. ..++. .+++++.+++..++ +.+++.|+-++.++-.-+.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~--ayVRk~Aalav~kly~ld~--------- 159 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDPH--AYVRKTAALAVAKLYRLDK--------- 159 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCCc--HHHHHHHHHHHHHHHhcCH---------
Confidence 777788888888888888876522 22333 36777888877554 5777888888888875332
Q ss_pred chhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 001690 620 LQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYK 657 (1028)
Q Consensus 620 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 657 (1028)
....+.|.+..+..++..++|.+..+|+.+|..+...
T Consensus 160 -~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 160 -DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 3456677888888888888888888888888887544
No 234
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.095 Score=58.13 Aligned_cols=64 Identities=27% Similarity=0.480 Sum_probs=50.2
Q ss_pred cccCcCcccccc------CceEccCcccchHHHHHHHHhcCCCCCCCccccccc-----cCCcCccchhhhHHHH
Q 001690 260 SLVCPLCNELME------DPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLS-----LDLMPNLSLRSSIEEW 323 (1028)
Q Consensus 260 ~~~Cpic~~~~~------dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~-----~~l~~n~~l~~~i~~~ 323 (1028)
.+.|-||.+.++ -|-++.||||+|..|+.+.+..+...||.||.+... ..+..|+.+...++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 356888877654 377788999999999998887777889999998422 3578888888888765
No 235
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.027 Score=58.59 Aligned_cols=42 Identities=31% Similarity=0.689 Sum_probs=35.0
Q ss_pred cccCcCccccccCceEccCcccc-hHHHHHHHHhcCCCCCCCcccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSF-ERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~-c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
+..|.||++.-.|-|.++|||.. |.+|=.+. ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHHH
Confidence 78999999999999999999965 88884332 37999998763
No 236
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.59 E-value=0.29 Score=45.08 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=26.3
Q ss_pred CCCCcccCcCccccccCceE--ccCcccchHHHHH
Q 001690 256 YPIESLVCPLCNELMEDPVA--IVCGHSFERKAIQ 288 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~--~~cght~c~~ci~ 288 (1028)
.+.++-.|++|...+.+++. .||||.|...|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 44567889999987776654 5999999999975
No 237
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.57 E-value=6.3 Score=43.77 Aligned_cols=202 Identities=18% Similarity=0.158 Sum_probs=107.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--HHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCC-CCCCC
Q 001690 629 VNVFLQLIANTERETKIQFLHLLVKLCYKS--EKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEG-NPNGV 705 (1028)
Q Consensus 629 v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~-~~~~~ 705 (1028)
+...+..+.......|+.++..+..+.... .+....-. ...+..+.+.++.+..+-+..|++++..++-. +.+..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~--~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRR--ETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 344555566677889999999998887655 22111111 34667788888888777777788888877622 11222
Q ss_pred CCCCCCCCcccHHHHHHhccCCCC-HHHHHHH---HHHHhcCCCCChHHHHHHHhccchH--HHHHHHHhhcCCCCCC--
Q 001690 706 PLPPSPGKETAINTVAAIFTCSPD-VEERSLA---AGIISQLPKDDIYVDEVLCKSEALK--AIHEVICSMDGRHNGI-- 777 (1028)
Q Consensus 706 i~~~~~~~~~~i~~Lv~lL~~~~~-~~~~~~a---~~~L~nL~~~~~~~~~~l~~~g~v~--~L~~lL~~~~~~~~~~-- 777 (1028)
..+. -....+.|.+++.++.. ...+..+ ++++.-+...+.+-.....+ .+. .....++.. |.
T Consensus 123 ~~ei---~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~-----~~~~ 192 (309)
T PF05004_consen 123 SEEI---FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSD-----GNAP 192 (309)
T ss_pred HHHH---HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcC-----CCcc
Confidence 2221 13457778888887653 2344343 44444444444333221111 122 111122211 21
Q ss_pred CCCCcchhhHHHHHHHHHHHhcCCCCh-HHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhc
Q 001690 778 RTPACQDASLLEIALAALLHFTDPTKP-ELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQS 844 (1028)
Q Consensus 778 ~~~~~~~~~~~e~~~~aL~~l~~~~~~-~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~ 844 (1028)
.........+...++.+-.-+....+. .....+ ...+|.|+.+|.+.+..||..|..+|+-|...
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 001111223333332222222211122 222222 34589999999999999999999999877553
No 238
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.41 E-value=0.8 Score=55.06 Aligned_cols=254 Identities=9% Similarity=-0.009 Sum_probs=157.3
Q ss_pred HHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHH-HHhcCCHhH
Q 001690 490 AEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIK-TLIAHSKMV 568 (1028)
Q Consensus 490 ~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~-nL~~~~~~~ 568 (1028)
+..|.++.+.....+-+ ...-..+. +....-+...++.|+...|+.+....++..+..+..+|. .+.-...-.
T Consensus 466 ~~~~~~~~~~svakt~~----~~~~E~~a--A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~ 539 (748)
T KOG4151|consen 466 LSLDEDPSCESVAKTVS----WAKNEYLA--AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS 539 (748)
T ss_pred hccCcchhhhHHHHHHH----HHHHHHHh--hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch
Confidence 34566666665554322 11111111 445556667788999999999999888899988888888 222221111
Q ss_pred HHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHH
Q 001690 569 KHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFL 648 (1028)
Q Consensus 569 ~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~ 648 (1028)
...++++...+++...... .-.+..++.||+..+..- .+.+..+-+++.+-.++...++..|..++
T Consensus 540 ------~~v~~~~~s~~~~d~~~~e-n~E~L~altnLas~s~s~-------r~~i~ke~~~~~ie~~~~ee~~~lqraa~ 605 (748)
T KOG4151|consen 540 ------YEVVKPLDSALHNDEKGLE-NFEALEALTNLASISESD-------RQKILKEKALGKIEELMTEENPALQRAAL 605 (748)
T ss_pred ------hhhhhhhcchhhhhHHHHH-HHHHHHHhhcccCcchhh-------HHHHHHHhcchhhHHHhhcccHHHHHHHH
Confidence 1366677777665432111 245566788888754322 34577777777788888889999999999
Q ss_pred HHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 649 HLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 649 ~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
..+.||..++--....+.+...+++....++....+....+++.++..+... ......... ........++.++.+.+
T Consensus 606 e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv-~~n~c~~~~-~~~~~~e~~~~~i~~~~ 683 (748)
T KOG4151|consen 606 ESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV-VENHCSRIL-ELLEWLEILVRAIQDED 683 (748)
T ss_pred HHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc-chhhhhhHH-HhhcchHHHHHhhcCch
Confidence 9999999998655555555356666666677776677777777777744411 111111110 11234556677777766
Q ss_pred CHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHH
Q 001690 729 DVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEV 766 (1028)
Q Consensus 729 ~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~l 766 (1028)
. +.+...+.++.|+.....++...+.+...++.+..+
T Consensus 684 ~-~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 684 D-EIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred h-hhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 5 677777777777665555555555555555544443
No 239
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.41 E-value=4.2 Score=46.91 Aligned_cols=153 Identities=17% Similarity=0.222 Sum_probs=113.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHc---CCCCC
Q 001690 536 IHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVG---GCQHP 612 (1028)
Q Consensus 536 i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~---~~~~~ 612 (1028)
...+.+++.+++...+..|...|..++.++.-...+++. .++..|..++.++..- ...+.-+..|..++. ...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~-~gl~~L~~liedg~~~-~~~~~L~~~L~af~elmehgv-- 160 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRC-SGLELLFSLIEDGRVC-MSSELLSTSLRAFSELMEHGV-- 160 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhc-chHHHHHHHHHcCccc-hHHHHHHHHHHHHHHHHhhce--
Confidence 456778888999999888999999999999999999998 8999999999987641 122333333444443 211
Q ss_pred cccccccchhhcccccHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHH
Q 001690 613 QFELHHGLQELQSEHNVNVFLQLIAN--TERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWA 690 (1028)
Q Consensus 613 ~~~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A 690 (1028)
. .-...+..+|.....+... .+..+-..|+..|-++..++...+..+.+ .--+..|+..++..+..++..|
T Consensus 161 -v-----sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq~~n~~i~~~a 233 (713)
T KOG2999|consen 161 -V-----SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQVSNQRIQTCA 233 (713)
T ss_pred -e-----eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHhcchHHHHHH
Confidence 0 0122334456666666642 23446668888999999888888888888 8899999999999999999999
Q ss_pred HHHHHHhcC
Q 001690 691 MRLIHCISE 699 (1028)
Q Consensus 691 ~~~L~~Ls~ 699 (1028)
..++..+..
T Consensus 234 ial~nal~~ 242 (713)
T KOG2999|consen 234 IALLNALFR 242 (713)
T ss_pred HHHHHHHHh
Confidence 999888873
No 240
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.40 E-value=2.8 Score=50.59 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=149.1
Q ss_pred chhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHh-ccccCchhHHHHHHcCCchhHHHhhcCCCHH-HHHHHHHHH
Q 001690 440 RETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQ-NLSHNTHFAVKMAEAGYFQPFVACFNRGSQE-TRALMASAL 517 (1028)
Q Consensus 440 ~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~-nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~-~~~~a~~~L 517 (1028)
...-+....+ +|+...|.++.....+..+..+..+|. .+....+ + -...++++...+...... -..+++.+|
T Consensus 493 ~K~~~~~~Ik-~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIK-PGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCcccc-ccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 3344445555 799999999999989999999988888 2221111 1 113566666666443322 345788899
Q ss_pred HHhhc-CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhC-CCcHHHHHHHHhccCCChhHH
Q 001690 518 RNMRL-DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLD-PATIPLLLGLIQFVRSDPHLK 595 (1028)
Q Consensus 518 ~~La~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~-~g~v~~L~~lL~~~~~~~~l~ 595 (1028)
.||++ ++..|..|.+.-+++.+-.++...++..+..++..+.||..++....+.+-. ...++.....+... +....
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~--~E~~~ 644 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA--DEKFE 644 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh--hhHHh
Confidence 99966 4566778888777777666777888999999999999999988665554433 23455555554432 23333
Q ss_pred HHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHH
Q 001690 596 HEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQL 675 (1028)
Q Consensus 596 ~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~L 675 (1028)
..++.++..+.....+. +-....-...-..++.++.+.++.+|...+....++......+...+.. ...++.+
T Consensus 645 lA~a~a~a~I~sv~~n~------c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~-~~~~~~l 717 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENH------CSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFE-TEVMELL 717 (748)
T ss_pred hhccccccchhhcchhh------hhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhcc-chHHHHH
Confidence 44444444343322111 1112333445667888888999999998888888866555555555555 4555555
Q ss_pred HhhhcCCChhHHHHHHHHHH
Q 001690 676 FSSLDSDQPVVRRWAMRLIH 695 (1028)
Q Consensus 676 v~Ll~~~~~~v~~~A~~~L~ 695 (1028)
..+-.......++.+...|.
T Consensus 718 ~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 718 SGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred HHHHHhhhhhhhhhhhhHHH
Confidence 44333333344444444443
No 241
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.22 E-value=0.22 Score=51.02 Aligned_cols=52 Identities=21% Similarity=0.447 Sum_probs=43.2
Q ss_pred CCcccCcCccccccCce----EccCcccchHHHHHHHHhcCCCCCCCccccccccCCcC
Q 001690 258 IESLVCPLCNELMEDPV----AIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMP 312 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv----~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 312 (1028)
...|.|||..-.|.+-. +.+|||.|....+++.. ..+||+|++.+...+.++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 46899999999998764 35899999999998863 568999999998877554
No 242
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.09 E-value=2.3 Score=45.24 Aligned_cols=99 Identities=22% Similarity=0.296 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhc
Q 001690 510 RALMASALRNMR-LDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQF 587 (1028)
Q Consensus 510 ~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~ 587 (1028)
...|+.+|.-+. .++..+....+..++..|+++|. +..+.++.+++.+|..+..+.....+.++..+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 344555555554 58999999999999999999995 5678899999999998877765555566666999999999998
Q ss_pred cCCChhHHHHHHHHHHHHHcC
Q 001690 588 VRSDPHLKHEAAEILALMVGG 608 (1028)
Q Consensus 588 ~~~~~~l~~~a~~~L~nL~~~ 608 (1028)
.+.+..++-++...|.-....
T Consensus 188 ~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccHHHhHHHHHHHHHHHcc
Confidence 877788888999988877763
No 243
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.04 E-value=0.73 Score=41.41 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=56.8
Q ss_pred HHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhh--CCcHHHHHHHhcCCC
Q 001690 470 QKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKD--RQFIHNVIQMLSSNS 547 (1028)
Q Consensus 470 ~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~s~~ 547 (1028)
..++.+|...+..-.....-.-.-++|+++..+.+.+..+|..|+.+|++++..-. ..+.. ......|.+++.+++
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCc
Confidence 33444455444332222222222478999999999999999999999999975432 23322 446777888888888
Q ss_pred HHHHHHHHHHHHH
Q 001690 548 PVCKSACLKCIKT 560 (1028)
Q Consensus 548 ~~~~~~A~~aL~n 560 (1028)
+.+|..| ..|-+
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 8877666 44444
No 244
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.00 E-value=17 Score=44.67 Aligned_cols=221 Identities=11% Similarity=0.125 Sum_probs=134.7
Q ss_pred cCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhh-cCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHH
Q 001690 463 NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF-NRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQ 541 (1028)
Q Consensus 463 ~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ 541 (1028)
+..|...-.|..++...+........+... .+...+..+ .+..+.++..|+.+++.-.+..-.. =...+.+..|++
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~--~~~p~ild~L~q 537 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL--SLQPMILDGLLQ 537 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCceecc--ccchHHHHHHHH
Confidence 455655556666666444332111111111 112223333 3445556777776666554211100 023556677777
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccch
Q 001690 542 MLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQ 621 (1028)
Q Consensus 542 lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~ 621 (1028)
+....+.++.-.-..+|...+..+.......++ -+.|..+.+...-+.++.+...+..++..++.......
T Consensus 538 las~~s~evl~llmE~Ls~vv~~dpef~as~~s-kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g-------- 608 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLDPEFAASMES-KICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG-------- 608 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccChhhhhhhhc-chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc--------
Confidence 777777778878888888888877666666666 67888888777666667776777777777765322111
Q ss_pred hhcccccHHHHHHHhcCCC----HHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHHHHHhh-hcCCChhHHHHHHHHHH
Q 001690 622 ELQSEHNVNVFLQLIANTE----RETKIQFLHLLVKLCYKS-EKVRNLIESNNDAITQLFSS-LDSDQPVVRRWAMRLIH 695 (1028)
Q Consensus 622 ~l~~~g~v~~Lv~lL~~~~----~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~L-l~~~~~~v~~~A~~~L~ 695 (1028)
=..+-.+|.+++.+..+. +....-++..|..+-.+. +..-+.+.+ -+.|++.+. +.+++.+.-.++..+|+
T Consensus 609 -~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 609 -PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred -chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHH
Confidence 123457999999999766 556666777776555543 233344443 688888874 55666788999999999
Q ss_pred Hhc
Q 001690 696 CIS 698 (1028)
Q Consensus 696 ~Ls 698 (1028)
.+-
T Consensus 686 a~I 688 (1005)
T KOG2274|consen 686 ALI 688 (1005)
T ss_pred HHH
Confidence 876
No 245
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.90 E-value=0.41 Score=32.91 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 001690 536 IHNVIQMLSSNSPVCKSACLKCIKTLIAH 564 (1028)
Q Consensus 536 i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~ 564 (1028)
+|.+++++.++++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999998753
No 246
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.79 E-value=4.9 Score=49.28 Aligned_cols=167 Identities=13% Similarity=0.103 Sum_probs=120.5
Q ss_pred hcCCCHHHHHHHH-HHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHH
Q 001690 502 FNRGSQETRALMA-SALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPL 580 (1028)
Q Consensus 502 L~~~~~~~~~~a~-~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~ 580 (1028)
|.++++..+..|. .+++.++..++.. -..|.+++.+.+.+.+.|+-.---|.+.+...+.. ++. ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHH
Confidence 6666777777777 6677776554411 13567777777899999998888888887765522 222 4556
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHH
Q 001690 581 LLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEK 660 (1028)
Q Consensus 581 L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~ 660 (1028)
+..=+++.+ +.++-.|..++..+-... .-...++++.++++++++.++..|+-++..+-.-+.
T Consensus 97 i~kDl~d~N--~~iR~~AlR~ls~l~~~e--------------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~- 159 (757)
T COG5096 97 IQKDLQDPN--EEIRGFALRTLSLLRVKE--------------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK- 159 (757)
T ss_pred HHhhccCCC--HHHHHHHHHHHHhcChHH--------------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-
Confidence 666666544 577777777665553311 123478899999999999999999999999876553
Q ss_pred HHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001690 661 VRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISE 699 (1028)
Q Consensus 661 ~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~ 699 (1028)
..+.+ .|.+..+..++...++.+..+|..+|..+-.
T Consensus 160 --~l~~~-~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 160 --DLYHE-LGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred --hhhhc-ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 24455 6888899999999999999999999998873
No 247
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.76 E-value=1.3 Score=45.27 Aligned_cols=116 Identities=9% Similarity=0.067 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHH----------------hchhHHHHHhhccC--------CchhHHHHHHHHhhhch
Q 001690 386 STEAILKCLYFLAKYSDIHKEAIVE----------------AGAVRRIVKQICKG--------ETMPEAIEVLSELTKRE 441 (1028)
Q Consensus 386 ~~~~A~~~L~~Ls~~~~~~k~~i~~----------------~g~i~~lv~~L~~~--------e~~~~A~~~L~~Ls~~~ 441 (1028)
.-..++..|.|++..+ .....+.+ ...+..|+..+..| ......+.+|.|+|..+
T Consensus 11 ~adl~~MLLsNlT~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 11 LADLACMLLSNLTRSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred hHHHHHHHHHHhccch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 3345667777777766 44443332 23677888887773 56778899999999999
Q ss_pred hhhhhhhcccch---HHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHc---CCchhHHHhh
Q 001690 442 TLGEKIGNTKDC---ITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEA---GYFQPFVACF 502 (1028)
Q Consensus 442 ~~~~~i~~~~g~---I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~---G~v~~Lv~lL 502 (1028)
+.|..+...... |..|+..+++.+..-+..++.+|+|+|...+....+... +++|.|+--|
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 999999764333 566677777777777788999999999999888777643 4444444444
No 248
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.71 E-value=1.7 Score=46.18 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHH
Q 001690 343 DQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVK 419 (1028)
Q Consensus 343 ~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~ 419 (1028)
.......|++.|+-+| -++..|.......++..++.+|.. .+.++..++.+|..+-.++..|...+.+.+|+..++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 3445677889999999 999999999999999999999954 7899999999988888888789998888999999999
Q ss_pred hhccC----CchhHHHHHHH
Q 001690 420 QICKG----ETMPEAIEVLS 435 (1028)
Q Consensus 420 ~L~~~----e~~~~A~~~L~ 435 (1028)
++++. +.+-+++..|+
T Consensus 184 llk~~~~~~~~r~K~~EFL~ 203 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLY 203 (257)
T ss_pred HHccccccHHHhHHHHHHHH
Confidence 99987 45555555544
No 249
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.35 E-value=0.54 Score=43.55 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=57.9
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 628 NVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 628 ~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
.+..|+.+|. +.+|.+..-|+.=|..++...+..+..+.+ .|+-..++.|+.+++++|+..|..++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6889999994 567777778888888888878888888888 888899999999999999999999988764
No 250
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.34 E-value=3.9 Score=50.09 Aligned_cols=246 Identities=16% Similarity=0.166 Sum_probs=142.5
Q ss_pred hHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHh-----h-cCcchHHHHhhCCcHHHHHH
Q 001690 468 LSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNM-----R-LDESSIKTLKDRQFIHNVIQ 541 (1028)
Q Consensus 468 ~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L-----a-~~~~~~~~i~~~g~i~~Lv~ 541 (1028)
...++...+.|++..++....+..+-.+...-.--..|+.+.+..|...|.-+ . .++++ ......|++
T Consensus 749 ~s~~~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~gs~dls~~al~~l~Wv~KaLl~R~~~~s------~~ia~klld 822 (1030)
T KOG1967|consen 749 SSTNALKTTANLKLKEEAIRQLFSAKFVSEKKVENYCGSLDLSEIALTVLAWVTKALLLRNHPES------SEIAEKLLD 822 (1030)
T ss_pred ccccchhhhhhhhcccHHHHHHHHHHhhhhHhHhhccCCcchhhHHHHHHHHHHHHHHHcCCccc------chHHHHHHH
Confidence 33456666777777777666666553332221111234444555555444332 1 12221 112345566
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCC--------------HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHc
Q 001690 542 MLSSNSPVCKSACLKCIKTLIAHS--------------KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVG 607 (1028)
Q Consensus 542 lL~s~~~~~~~~A~~aL~nL~~~~--------------~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~ 607 (1028)
+|+. +++-..|+.++.-+..+. -.++++.. .++|.|++.....+ ...|-.-..+|.++-.
T Consensus 823 ~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~--~ivP~l~~~~~t~~--~~~K~~yl~~LshVl~ 896 (1030)
T KOG1967|consen 823 LLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC--DIVPILVSKFETAP--GSQKHNYLEALSHVLT 896 (1030)
T ss_pred hcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH--hhHHHHHHHhccCC--ccchhHHHHHHHHHHh
Confidence 6654 233334444444443321 12455555 48999999998433 3445666777888777
Q ss_pred CCCCCcccccccchhhcc-cccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCC---
Q 001690 608 GCQHPQFELHHGLQELQS-EHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQ--- 683 (1028)
Q Consensus 608 ~~~~~~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~--- 683 (1028)
.-+-+ . .+-. ....|.|++-|.-+++.+|..++.++.-+....+.....=. ...+|.+..+-.+.+
T Consensus 897 ~vP~~-v-------llp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~--~Tlvp~lLsls~~~~n~~ 966 (1030)
T KOG1967|consen 897 NVPKQ-V-------LLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL--STLVPYLLSLSSDNDNNM 966 (1030)
T ss_pred cCCHH-h-------hccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH--hHHHHHHHhcCCCCCcch
Confidence 43211 1 1111 13567788888899999999999988877665543333222 256777777766555
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHH
Q 001690 684 PVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGI 739 (1028)
Q Consensus 684 ~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~ 739 (1028)
..+|..|..+|..|.+.-|...+.. .....+..|++.|+++.. -+|..|+.+
T Consensus 967 ~~VR~~ALqcL~aL~~~~P~~~l~~---fr~~Vl~al~k~LdDkKR-lVR~eAv~t 1018 (1030)
T KOG1967|consen 967 MVVREDALQCLNALTRRLPTKSLLS---FRPLVLRALIKILDDKKR-LVRKEAVDT 1018 (1030)
T ss_pred hHHHHHHHHHHHHHhccCCCccccc---ccHHHHHHhhhccCcHHH-HHHHHHHHH
Confidence 4799999999999995344434333 245678888998888765 555555543
No 251
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=89.95 E-value=14 Score=41.39 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=95.7
Q ss_pred hHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhh---c-------CChhhHHHHHHHHhccc
Q 001690 414 VRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLH---N-------NNPNLSQKAHDVLQNLS 480 (1028)
Q Consensus 414 i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~---~-------~~~~~~~~a~~~L~nL~ 480 (1028)
...++.+|.++ ..+..++.+++-||+....-.-... ..-...|..+-. + .+..+...+..+|.|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~-~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTN-DQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccc-hHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 46788888888 5667888899999886554444433 233344444332 1 23467888999999998
Q ss_pred cCchhH-HHHHHcCCchhHHHhhc-----CCCHHHHHHHHHHHHHh-hcCcchHHHH-hhCCcHHHHHHHhcCC------
Q 001690 481 HNTHFA-VKMAEAGYFQPFVACFN-----RGSQETRALMASALRNM-RLDESSIKTL-KDRQFIHNVIQMLSSN------ 546 (1028)
Q Consensus 481 ~~~~n~-~~i~~~G~v~~Lv~lL~-----~~~~~~~~~a~~~L~~L-a~~~~~~~~i-~~~g~i~~Lv~lL~s~------ 546 (1028)
.+.... ....+......+.+.+. +-..+++..-...|.-| +...+.|..+ .+.+|++.+.+.|.+.
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse 205 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE 205 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence 776654 44457777777777652 12233555556666666 4555666665 6688899999888621
Q ss_pred ---CH---H---HHHHHHHHHHHHhcCC
Q 001690 547 ---SP---V---CKSACLKCIKTLIAHS 565 (1028)
Q Consensus 547 ---~~---~---~~~~A~~aL~nL~~~~ 565 (1028)
++ . .--.++++++|+..+.
T Consensus 206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 206 INVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 12 1 2345677778886653
No 252
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.80 E-value=22 Score=40.57 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=112.5
Q ss_pred HHHHhhcCChhhHHHHHHHHhccccCc----hhHHHHHHcCCchhHHHhhcCC-----CHH--HHHHHHHHHHHhhcCcc
Q 001690 457 MVSLLHNNNPNLSQKAHDVLQNLSHNT----HFAVKMAEAGYFQPFVACFNRG-----SQE--TRALMASALRNMRLDES 525 (1028)
Q Consensus 457 Lv~lL~~~~~~~~~~a~~~L~nL~~~~----~n~~~i~~~G~v~~Lv~lL~~~-----~~~--~~~~a~~~L~~La~~~~ 525 (1028)
+..++...+..-+..|+-..-.++.++ .|+..+.++=+.+-+-++|.++ -++ .+.-+..+|+-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 445555555555666666666676655 4788899998888888888532 122 34445566776666654
Q ss_pred h--HHHHhhCCcHHHHHHHhcCC-CHH------HHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHH
Q 001690 526 S--IKTLKDRQFIHNVIQMLSSN-SPV------CKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKH 596 (1028)
Q Consensus 526 ~--~~~i~~~g~i~~Lv~lL~s~-~~~------~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~ 596 (1028)
- ...+++ .||.|...+..+ ++. ..+.+..+|..++..+...+.++.. |+++.+.+.-.-++. ..-..
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~-G~~~~~~Q~y~~~~~-~~d~a 171 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIAS-GGLRVIAQMYELPDG-SHDMA 171 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhc-CchHHHHHHHhCCCC-chhHH
Confidence 2 223443 589999999743 332 6789999999999999999999998 999999866543322 22123
Q ss_pred HHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc-------CCCHHHHHHHHHHHHHhhc
Q 001690 597 EAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA-------NTERETKIQFLHLLVKLCY 656 (1028)
Q Consensus 597 ~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~-------~~~~~~~~~a~~aL~~L~~ 656 (1028)
-+.-++.-+...-. .-...++.++.++. ..+...+..+.+.|..+-+
T Consensus 172 lal~Vlll~~~~~~-------------cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 172 LALKVLLLLVSKLD-------------CWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHHhcc-------------cCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 33333333333211 11124555555544 3344566677777765443
No 253
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.70 E-value=71 Score=40.90 Aligned_cols=126 Identities=22% Similarity=0.225 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhh-cCCHHHHHHHHHHHHhhhhccccccccccccccccccc
Q 001690 784 DASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLS-TGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTL 862 (1028)
Q Consensus 784 ~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~ 862 (1028)
++.++..|..+|.+|..-+. +. . ..-+|.|+..|. +++|.+|..+..|++.|+-.-++ +-.+
T Consensus 936 dp~Lq~AAtLaL~klM~iSa-~f----c-es~l~llftimeksp~p~IRsN~VvalgDlav~fpn------lie~----- 998 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISA-EF----C-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN------LIEP----- 998 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhH-HH----H-HHHHHHHHHHHhcCCCceeeecchheccchhhhccc------ccch-----
Confidence 46788888888888873211 11 1 123899999998 78999999999999998865444 2111
Q ss_pred CchhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccch
Q 001690 863 MPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTL 942 (1028)
Q Consensus 863 ~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~ 942 (1028)
--+.|-.-|.+.++.|+..|+-.|..|...+
T Consensus 999 ----------------------------------------------~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--- 1029 (1251)
T KOG0414|consen 999 ----------------------------------------------WTEHLYRRLRDESPSVRKTALLVLSHLILND--- 1029 (1251)
T ss_pred ----------------------------------------------hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh---
Confidence 0146777889999999999999999998653
Q ss_pred hhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHH
Q 001690 943 SHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMI 980 (1028)
Q Consensus 943 ~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~ 980 (1028)
+|-=-|-+.-+..++..++++++..|-.-+..+
T Consensus 1030 -----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 1030 -----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred -----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 333446677777788888888888777444433
No 254
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.63 E-value=9.8 Score=47.47 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=86.3
Q ss_pred HHhhCCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhc----cC--CChhHHHH
Q 001690 529 TLKDRQFIHNVIQMLSS-----NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQF----VR--SDPHLKHE 597 (1028)
Q Consensus 529 ~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~----~~--~~~~l~~~ 597 (1028)
.+.+.||+..|+.++.+ +....-...+..|...|.-..|++++++. |+++.|++.+.. +. ....+-+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHH
Confidence 34568999999999874 23445556677777777888999999997 999999998862 11 11344455
Q ss_pred HHHHHHHHHcCCCCCcccccccchhh-----cccccHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCCHHHHHHHHh
Q 001690 598 AAEILALMVGGCQHPQFELHHGLQEL-----QSEHNVNVFLQLIANT----ERETKIQFLHLLVKLCYKSEKVRNLIES 667 (1028)
Q Consensus 598 a~~~L~nL~~~~~~~~~~~~~~~~~l-----~~~g~v~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~~~~~~i~~ 667 (1028)
...++-.+.................. ....-+..|++.+.+. ++.+....+++|-.|+....+....+.+
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 55555555442211100000000000 0122366667766643 5788889999999999998766666654
No 255
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.58 E-value=0.18 Score=51.05 Aligned_cols=51 Identities=29% Similarity=0.678 Sum_probs=39.4
Q ss_pred CcccCcCcc-ccccCceE---c-c-CcccchHHHHHHHHhcCCCCCC--CccccccccC
Q 001690 259 ESLVCPLCN-ELMEDPVA---I-V-CGHSFERKAIQEHFQRGGKNCP--TCRQELLSLD 309 (1028)
Q Consensus 259 ~~~~Cpic~-~~~~dPv~---~-~-cght~c~~ci~~~~~~~~~~CP--~~~~~l~~~~ 309 (1028)
.+-.||+|. +.+-.|-+ + | |-|..|.+|..+.|..|...|| -|++-+....
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 467999997 34445532 2 4 9999999999999999999999 7877665433
No 256
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=0.16 Score=58.47 Aligned_cols=38 Identities=32% Similarity=0.815 Sum_probs=31.1
Q ss_pred CcccCcCccccc----cCceEccCcccchHHHHHHHHhcCCCCCC
Q 001690 259 ESLVCPLCNELM----EDPVAIVCGHSFERKAIQEHFQRGGKNCP 299 (1028)
Q Consensus 259 ~~~~Cpic~~~~----~dPv~~~cght~c~~ci~~~~~~~~~~CP 299 (1028)
+-++|+||...| ..||.+-||||.|+.|.+.-.. .+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 457899997665 3799999999999999988654 4677
No 257
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=89.28 E-value=0.18 Score=52.22 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=38.2
Q ss_pred CcccCcCccccccCceE-ccCcccchHHHHHHHHhcC-CCCCCCcccc
Q 001690 259 ESLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQRG-GKNCPTCRQE 304 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~~~-~~~CP~~~~~ 304 (1028)
-+++|||++.....|++ ..|||.|.|..|...+... ...||+-+-.
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 37999999999999998 5899999999999988632 3579985544
No 258
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=89.26 E-value=5.5 Score=46.00 Aligned_cols=154 Identities=13% Similarity=0.170 Sum_probs=110.3
Q ss_pred hhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCH----HHHHHHHHHHHHHhcCCHhHHHH
Q 001690 496 QPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSP----VCKSACLKCIKTLIAHSKMVKHL 571 (1028)
Q Consensus 496 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~----~~~~~A~~aL~nL~~~~~~~~~l 571 (1028)
..+.+.+.+++...|..+...|..++.++.-...++...++..|..++.++.. .....+++++..+-.+.-..-..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 45677888999999999999999999999988899998899999999997753 45666667766665443322222
Q ss_pred HhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHH
Q 001690 572 LLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLL 651 (1028)
Q Consensus 572 v~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL 651 (1028)
+.. .+|.....+......+..+-..|...|-++..++... .+.+.++--+..|+..+...+..++..|+..+
T Consensus 166 ~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~-------~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 166 VSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTL-------RQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred ccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHH-------HHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 333 3455555555433233445567778888887765421 35677888899999999998888888888777
Q ss_pred HHhhcC
Q 001690 652 VKLCYK 657 (1028)
Q Consensus 652 ~~L~~~ 657 (1028)
..+-..
T Consensus 238 nal~~~ 243 (713)
T KOG2999|consen 238 NALFRK 243 (713)
T ss_pred HHHHhh
Confidence 766543
No 259
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.06 E-value=29 Score=42.85 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=125.6
Q ss_pred HHHHHHHhh-cCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhh
Q 001690 454 ITIMVSLLH-NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKD 532 (1028)
Q Consensus 454 I~~Lv~lL~-~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 532 (1028)
+...+..+. +..+..+..|+.++...+... -. .=...+++..|+++....+.++-..-..+|......+.-...-.+
T Consensus 492 l~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl-~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~ 569 (1005)
T KOG2274|consen 492 LNATVNALTMDVPPPVKISAVRAFCGYCKVK-VL-LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASME 569 (1005)
T ss_pred HHHHHHhhccCCCCchhHHHHHHHHhccCce-ec-cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhh
Confidence 334455554 445667778888777766211 00 001235677788888777777777777888888654444444455
Q ss_pred CCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCC--ChhHHHHHHHHHHHHHcC
Q 001690 533 RQFIHNVIQMLS--SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS--DPHLKHEAAEILALMVGG 608 (1028)
Q Consensus 533 ~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~--~~~l~~~a~~~L~nL~~~ 608 (1028)
+...|-.+.+.. +.+|.+...+-.++..|+....+..-+.+. .+|.|+..|..... +..+...+..+|..+.+.
T Consensus 570 skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~--~iPslisil~~~~~~~~~~l~~~aidvLttvvr~ 647 (1005)
T KOG2274|consen 570 SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER--LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN 647 (1005)
T ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH--HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc
Confidence 566677666553 677888888888888887765555555553 89999999986542 255667888888877776
Q ss_pred CCCCcccccccchhhcccccHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCC
Q 001690 609 CQHPQFELHHGLQELQSEHNVNVFLQLI-ANTERETKIQFLHLLVKLCYKS 658 (1028)
Q Consensus 609 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~ 658 (1028)
.+.+- ....-..+.|++.... .+++..+..++..+|..+-+..
T Consensus 648 tp~pL-------~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 648 TPSPL-------PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred CCCCc-------cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 54331 1233345667777764 4677778778888887776654
No 260
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=13 Score=47.06 Aligned_cols=209 Identities=16% Similarity=0.216 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC------CchhHHHHHHHHhhh--chhhhhhhhcccchH
Q 001690 383 TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG------ETMPEAIEVLSELTK--RETLGEKIGNTKDCI 454 (1028)
Q Consensus 383 ~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~------e~~~~A~~~L~~Ls~--~~~~~~~i~~~~g~I 454 (1028)
+..+|..+...|..++... ...... ..-+..+.+.|.+. ..+..+..+|..|-. ..++...+. ..|
T Consensus 667 ~~~vQkK~yrlL~~l~~~~-s~~~~~--~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~---k~I 740 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSP-SGEGLV--EQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP---KLI 740 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCC-chhhHH--HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH---HHH
Confidence 7889999999999998774 222222 12233334444332 344444444444422 134444443 456
Q ss_pred HHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcC------CchhHHHhhcCC--CHHHHHHHH--HHHHHhhcCc
Q 001690 455 TIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAG------YFQPFVACFNRG--SQETRALMA--SALRNMRLDE 524 (1028)
Q Consensus 455 ~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G------~v~~Lv~lL~~~--~~~~~~~a~--~~L~~La~~~ 524 (1028)
|.++-.++..+...+..|..+|..++. .....+.| .|..++..+..+ .+.....+. -+++.+..
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~-- 814 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ-- 814 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--
Confidence 666666688899999999999999873 22222333 455566666544 333333222 23333321
Q ss_pred chHHHHhhCCcHHHH----HHHhcCCCHHHHHHHHHHHHHHhcC-CHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHH
Q 001690 525 SSIKTLKDRQFIHNV----IQMLSSNSPVCKSACLKCIKTLIAH-SKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAA 599 (1028)
Q Consensus 525 ~~~~~i~~~g~i~~L----v~lL~s~~~~~~~~A~~aL~nL~~~-~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~ 599 (1028)
....+.+.+.++.+ ...|.+.+++++..|++.+.-++.. ++..-.-... -.+|.+..+++..+ ..++.+.-
T Consensus 815 -e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~-~LL~sll~ls~d~k--~~~r~Kvr 890 (1176)
T KOG1248|consen 815 -EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE-ELLPSLLALSHDHK--IKVRKKVR 890 (1176)
T ss_pred -HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH-HHHHHHHHHHHhhh--HHHHHHHH
Confidence 11223333344444 4455689999999999999998765 4433332222 47888888877543 34444445
Q ss_pred HHHHHHHc
Q 001690 600 EILALMVG 607 (1028)
Q Consensus 600 ~~L~nL~~ 607 (1028)
..|-.|++
T Consensus 891 ~LlekLir 898 (1176)
T KOG1248|consen 891 LLLEKLIR 898 (1176)
T ss_pred HHHHHHHH
Confidence 54555544
No 261
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.37 E-value=0.41 Score=44.31 Aligned_cols=50 Identities=20% Similarity=0.423 Sum_probs=41.5
Q ss_pred CcccCcCccccccCceEc----cCcccchHHHHHHHHhc--CCCCCCCcccccccc
Q 001690 259 ESLVCPLCNELMEDPVAI----VCGHSFERKAIQEHFQR--GGKNCPTCRQELLSL 308 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~----~cght~c~~ci~~~~~~--~~~~CP~~~~~l~~~ 308 (1028)
.-+.|.||.|...|+-.+ -||.+.|..|--..|+. -++.||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 468999999999888765 49999999999888874 358999999888654
No 262
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.97 E-value=1.7 Score=44.12 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=54.2
Q ss_pred chhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccc-hHHHHHHHhcCChhHHHHHHHHHHHHHhh
Q 001690 910 VKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQG-VLAILQVLEKGSLSAKTKALDLFQMIQKH 983 (1028)
Q Consensus 910 i~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~-i~~l~~ll~~~~~~~~~~A~~~l~~~~~~ 983 (1028)
++.+...|.++++.||..|+..|..|+..+..- -.|- +..++.++...|++++..|...+..+...
T Consensus 27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik--------~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 27 LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK--------VKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee--------ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999998654321 1132 36777888899999999999999999976
No 263
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.94 E-value=0.92 Score=44.94 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=91.3
Q ss_pred HHHHHHHhh--cCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHH-hhcCCCHHHHHHHHHHHHHh-hcCcchHHH
Q 001690 454 ITIMVSLLH--NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVA-CFNRGSQETRALMASALRNM-RLDESSIKT 529 (1028)
Q Consensus 454 I~~Lv~lL~--~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~-lL~~~~~~~~~~a~~~L~~L-a~~~~~~~~ 529 (1028)
+..++..|. ..+++++..+.-++..+- +..+....+ .+...+. ++..++.+-...+..+|..| -..++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 444555554 356677777777777662 222222221 1223333 33443344567778888888 345555555
Q ss_pred H-hhCCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChh-HHHHHHHHHHH
Q 001690 530 L-KDRQFIHNVIQMLS--SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPH-LKHEAAEILAL 604 (1028)
Q Consensus 530 i-~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~-l~~~a~~~L~n 604 (1028)
+ ...|.++.++.++. +.+...+..++.+|..=|.+...+..+.+. +++.|-++.+...+ .. ++..|+-+|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~--~~~~L~~~~~~~~~-~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN--YVSWLKELYKNSKD-DSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH--CHHHHHHHTTTCC--HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH--HHHHHHHHHccccc-hHHHHHHHHHHHhc
Confidence 5 57899999999999 788888999999998877777777766664 88999998865443 33 56666655543
No 264
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.89 E-value=6.6 Score=38.88 Aligned_cols=132 Identities=13% Similarity=0.201 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhh-hchhhhhhhhcccchHHHHH
Q 001690 383 TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELT-KRETLGEKIGNTKDCITIMV 458 (1028)
Q Consensus 383 ~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls-~~~~~~~~i~~~~g~I~~Lv 458 (1028)
.+.+|..+.-++..+- +..++.. ...+...+..+-.. +....+..++..+- ..++....+....|.++.++
T Consensus 18 ~~~~r~~a~v~l~k~l---~~~~~~~--~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL---DAAREEF--KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp SCCHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CHhHHHHHHHHHHHHH---HHhHHHH--HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 6677777777766662 1333333 22333444433333 66677777777763 34577777766689999999
Q ss_pred HHhh--cCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhc-CCCHH-HHHHHHHHHHHh
Q 001690 459 SLLH--NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFN-RGSQE-TRALMASALRNM 520 (1028)
Q Consensus 459 ~lL~--~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~-~~~~a~~~L~~L 520 (1028)
.+.. +.+...+..++++|..-|.+...+..+.+ .+++.|-+.++ +.++. ++..|+-+|.+|
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 9999 77888888888888777666555555554 47899999995 44455 788888777654
No 265
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.79 E-value=14 Score=40.86 Aligned_cols=169 Identities=10% Similarity=0.131 Sum_probs=108.7
Q ss_pred chhHHHH-HhhccC--CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCch--hH
Q 001690 412 GAVRRIV-KQICKG--ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTH--FA 486 (1028)
Q Consensus 412 g~i~~lv-~~L~~~--e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~--n~ 486 (1028)
+-+..+| ..+++. ..|+.|+.+|.-.+-.+. .++ ...++.+...++.+++.++..|+.++..+....+ ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a--~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA--KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3344444 444444 788889988888876543 233 2567888888888899999999999999764322 11
Q ss_pred HH-------HHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCC----CHHHHHHHH
Q 001690 487 VK-------MAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSN----SPVCKSACL 555 (1028)
Q Consensus 487 ~~-------i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~----~~~~~~~A~ 555 (1028)
.. ......+..+.+.|.+.+++++..++..+++|-....... ...++..|+-+--++ +...|..=.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1123567778888888899999999999999843221111 123444454443332 344555555
Q ss_pred HHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccC
Q 001690 556 KCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVR 589 (1028)
Q Consensus 556 ~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~ 589 (1028)
..+-..|......+..+.. +.+|.+..+.....
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~-~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAE-AFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHcCCHHHHHHHHH-HHHHHHHHHHhCcc
Confidence 5555667777666677776 78888888887654
No 266
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.26 E-value=2.1 Score=43.63 Aligned_cols=79 Identities=9% Similarity=0.150 Sum_probs=64.1
Q ss_pred hhHHHHHHcCCchhHHHhhc---------CCCHHHHHHHHHHHHHhhcCcchHHHHhh-CCcHHHHHHHhcCCCHHHHHH
Q 001690 484 HFAVKMAEAGYFQPFVACFN---------RGSQETRALMASALRNMRLDESSIKTLKD-RQFIHNVIQMLSSNSPVCKSA 553 (1028)
Q Consensus 484 ~n~~~i~~~G~v~~Lv~lL~---------~~~~~~~~~a~~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL~s~~~~~~~~ 553 (1028)
.-...+++.||+..|+..|. ..+.+.+..++.+|..|..+..+...+.+ .+++..++..|.++++.++..
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 34667778899999999883 13457888899999999988888888766 788999999999999999999
Q ss_pred HHHHHHHHh
Q 001690 554 CLKCIKTLI 562 (1028)
Q Consensus 554 A~~aL~nL~ 562 (1028)
++..|..+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 267
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.95 E-value=0.24 Score=62.12 Aligned_cols=45 Identities=20% Similarity=0.534 Sum_probs=38.7
Q ss_pred CCcccCcCcccccc-CceEccCcccchHHHHHHHHhcCCCCCCCccc
Q 001690 258 IESLVCPLCNELME-DPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQ 303 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~-dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~ 303 (1028)
.+.+.|+||+++++ ---+.-|||.||..|+..|.+ .+..||.|..
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhh
Confidence 35679999999999 455779999999999999998 5678999973
No 268
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=85.93 E-value=3 Score=35.17 Aligned_cols=64 Identities=9% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHhHHHHHhC
Q 001690 511 ALMASALRNMRLDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHSKMVKHLLLD 574 (1028)
Q Consensus 511 ~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~ 574 (1028)
..+.++++++++.+.+...+-+.++++.++++.. ++...+|--|..+|.-++...+..+.+-+.
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 5678999999999999988888899999999987 677899999999999999987777665544
No 269
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=5.6 Score=48.72 Aligned_cols=35 Identities=29% Similarity=0.625 Sum_probs=28.7
Q ss_pred CCcccCcCccc-cccCceE-ccCcccchHHHHHHHHh
Q 001690 258 IESLVCPLCNE-LMEDPVA-IVCGHSFERKAIQEHFQ 292 (1028)
Q Consensus 258 ~~~~~Cpic~~-~~~dPv~-~~cght~c~~ci~~~~~ 292 (1028)
...-.|-+|.. ++..|.. .+|||.|-+.||.+...
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 34678999976 5567876 59999999999999865
No 270
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=85.19 E-value=3.5 Score=41.84 Aligned_cols=93 Identities=16% Similarity=0.264 Sum_probs=71.7
Q ss_pred ChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhc
Q 001690 465 NPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLS 544 (1028)
Q Consensus 465 ~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~ 544 (1028)
++.++.+++.++..|+...++. ++ ..+|.+...|.++++.+|..|+.+|..|...+--+.. ...+..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 4678889999999998665432 22 2578899999999999999999999999654322211 222377788889
Q ss_pred CCCHHHHHHHHHHHHHHhcC
Q 001690 545 SNSPVCKSACLKCIKTLIAH 564 (1028)
Q Consensus 545 s~~~~~~~~A~~aL~nL~~~ 564 (1028)
++++.++..|...+..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998765
No 271
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=85.12 E-value=5.8 Score=40.39 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=63.0
Q ss_pred HHHHHHHHhchhHHHHHhhccC-----------CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHH
Q 001690 403 IHKEAIVEAGAVRRIVKQICKG-----------ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQK 471 (1028)
Q Consensus 403 ~~k~~i~~~g~i~~lv~~L~~~-----------e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~ 471 (1028)
.|-..+.+.||+..|+..|..- +....++.+|+.+..+......+...++++..|+..|.+.+..++..
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 5777777889999999988753 24566788888888888878888888999999999999999999999
Q ss_pred HHHHHhccc
Q 001690 472 AHDVLQNLS 480 (1028)
Q Consensus 472 a~~~L~nL~ 480 (1028)
++..|..+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998775
No 272
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.69 E-value=6.9 Score=48.03 Aligned_cols=184 Identities=8% Similarity=0.014 Sum_probs=118.2
Q ss_pred HHHHHHHhc--CHHHHHHHHHHHHHHhcccHHHHH--------HHHH----hchhHHHHHhhccC--CchhHHHHHHHHh
Q 001690 374 PKLVEFLKD--TRLSTEAILKCLYFLAKYSDIHKE--------AIVE----AGAVRRIVKQICKG--ETMPEAIEVLSEL 437 (1028)
Q Consensus 374 p~Lv~lL~s--~~~~~~~A~~~L~~Ls~~~~~~k~--------~i~~----~g~i~~lv~~L~~~--e~~~~A~~~L~~L 437 (1028)
+...+++.. ++.+-..|..++..+.+|.+..+. .+.+ ...+|.++...... ..+.+-..+|.++
T Consensus 815 ~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 815 EIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred hHHHHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 333444443 455666677777777776642111 1111 34456666666533 5666667777665
Q ss_pred hh-chhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCC---HHHHHHH
Q 001690 438 TK-RETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGS---QETRALM 513 (1028)
Q Consensus 438 s~-~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~---~~~~~~a 513 (1028)
-. .|. ...+-..+..+|.|.+-|.-.|..++..+..++.-+....+....---.-.||.++.+=++.+ ..++..|
T Consensus 895 l~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 895 LTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence 33 332 444455567888889999889999988888888876544332222211235666666654443 5688899
Q ss_pred HHHHHHhhc-CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 001690 514 ASALRNMRL-DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCI 558 (1028)
Q Consensus 514 ~~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL 558 (1028)
...|..|.. .|...-.-.+..++..|++.|+++...+|+.|+.+=
T Consensus 974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 999999966 666555556677899999999999899999998764
No 273
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=83.85 E-value=85 Score=39.13 Aligned_cols=190 Identities=11% Similarity=0.100 Sum_probs=111.6
Q ss_pred HHhccccC-chhHHHHHHcCCchhHHHhhc-CCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHH--HHHHHhcCCC-HH
Q 001690 475 VLQNLSHN-THFAVKMAEAGYFQPFVACFN-RGSQETRALMASALRNMRLDESSIKTLKDRQFIH--NVIQMLSSNS-PV 549 (1028)
Q Consensus 475 ~L~nL~~~-~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~--~Lv~lL~s~~-~~ 549 (1028)
+|++.... ++++..+++.|++..+...++ -...+++..+...|.+++...+.+....-...+. .+-.++..-+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 77777654 579999999999999999995 4567799999999999976554433322111111 3323444433 36
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHH-cCCCCCcccccccchhhccccc
Q 001690 550 CKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMV-GGCQHPQFELHHGLQELQSEHN 628 (1028)
Q Consensus 550 ~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~-~~~~~~~~~~~~~~~~l~~~g~ 628 (1028)
.-..|+.+|..+..+.+. .... +. +..+-..+.... ....... .......
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~-~~-----------------r~~~~~~l~e~i~~~~~~~~--------~~~~~~~ 624 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTEC-VF-----------------RNSVNELLVEAISRWLTSEI--------RVINDRS 624 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccc-cc-----------------hHHHHHHHHHHhhccCccce--------eehhhhh
Confidence 677888888888666433 1111 11 111111111111 1111111 1111122
Q ss_pred HHH-HHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCC-hhHHHHHHHHH
Q 001690 629 VNV-FLQLIA-NTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQ-PVVRRWAMRLI 694 (1028)
Q Consensus 629 v~~-Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~-~~v~~~A~~~L 694 (1028)
..+ +..++. +..+..+-.|++++.+++...++....+.+ .++++.+..+-.... ..++..+...+
T Consensus 625 f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 625 FFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-SNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred cchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-ccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 222 445555 566778889999999999988778887887 788888876543332 34444444433
No 274
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.39 E-value=0.81 Score=49.95 Aligned_cols=60 Identities=22% Similarity=0.423 Sum_probs=45.6
Q ss_pred CCCcccCcCccccccCceE-ccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHH
Q 001690 257 PIESLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEW 323 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 323 (1028)
..+-+.||+|.+.+.-|+. =.-||.-|..|=.+ ....||.|+.++.+ +.++++.++++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence 4577999999999999964 35699999999653 45679999998863 2466666666553
No 275
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=0.98 Score=49.97 Aligned_cols=60 Identities=18% Similarity=0.422 Sum_probs=39.2
Q ss_pred CcccCcCccccccC---ceEccCcccchHHHHHHHHh----cCC---CCCCCccccccccCCcCccchhhhHHH
Q 001690 259 ESLVCPLCNELMED---PVAIVCGHSFERKAIQEHFQ----RGG---KNCPTCRQELLSLDLMPNLSLRSSIEE 322 (1028)
Q Consensus 259 ~~~~Cpic~~~~~d---Pv~~~cght~c~~ci~~~~~----~~~---~~CP~~~~~l~~~~l~~n~~l~~~i~~ 322 (1028)
.-|.|.||++-... =+.+||+|.||+.|...++. .|. ..||.++-+ ...|-..++.++..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~----~~a~~g~vKelvg~ 252 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG----SVAPPGQVKELVGD 252 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc----ccCCchHHHHHHHH
Confidence 46999999986543 23479999999999999986 222 457765332 12223356666543
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.66 E-value=0.62 Score=50.68 Aligned_cols=45 Identities=36% Similarity=0.894 Sum_probs=36.0
Q ss_pred CcccCcCcccccc--Cc-e-EccCcccchHHHHHHHHhc-CCCCCCCccc
Q 001690 259 ESLVCPLCNELME--DP-V-AIVCGHSFERKAIQEHFQR-GGKNCPTCRQ 303 (1028)
Q Consensus 259 ~~~~Cpic~~~~~--dP-v-~~~cght~c~~ci~~~~~~-~~~~CP~~~~ 303 (1028)
-++.|-.|.+.+- +- . -+||.|.|--.|+++++.+ +..+||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4789999998653 22 2 3799999999999999964 4579999984
No 277
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.48 E-value=0.85 Score=48.29 Aligned_cols=45 Identities=36% Similarity=0.786 Sum_probs=37.2
Q ss_pred CcccCcCccccccC---ceEccCcccchHHHHHHHHhcCC--CCCCCccc
Q 001690 259 ESLVCPLCNELMED---PVAIVCGHSFERKAIQEHFQRGG--KNCPTCRQ 303 (1028)
Q Consensus 259 ~~~~Cpic~~~~~d---Pv~~~cght~c~~ci~~~~~~~~--~~CP~~~~ 303 (1028)
.-|.||+..+.-.| |+.++|||..-+..+.+.-+.|. ..||-|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 46999999987664 89999999999999988877665 57999943
No 278
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.65 E-value=0.62 Score=48.20 Aligned_cols=58 Identities=22% Similarity=0.572 Sum_probs=37.3
Q ss_pred ccCcCccccc-cCce-EccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHH
Q 001690 261 LVCPLCNELM-EDPV-AIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEW 323 (1028)
Q Consensus 261 ~~Cpic~~~~-~dPv-~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 323 (1028)
..|.-|..-- .+|. +++|+|.||..|...-. ...||.|++++....+.+| |-.-|..+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s--lp~~ik~~ 63 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS--LPTDIKSY 63 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc--cchhHHHH
Confidence 3466564321 5776 46999999999974321 2389999999766666555 33344443
No 279
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=81.57 E-value=39 Score=38.55 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=61.6
Q ss_pred hHHHHHHHhhc-CChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhc-CCCHHHHHHH-HHHHHHhhcCcchHHH
Q 001690 453 CITIMVSLLHN-NNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFN-RGSQETRALM-ASALRNMRLDESSIKT 529 (1028)
Q Consensus 453 ~I~~Lv~lL~~-~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a-~~~L~~La~~~~~~~~ 529 (1028)
-+..+..=+.+ .+..++..++--|..-+.+++.+..+...|.+..+++.+. .++...-..+ +.+++-++.+...-..
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 34444444443 3457778888888888899999999999999999999994 3333233334 3444444555544455
Q ss_pred HhhCCcHHHHHHHhc
Q 001690 530 LKDRQFIHNVIQMLS 544 (1028)
Q Consensus 530 i~~~g~i~~Lv~lL~ 544 (1028)
+.+.+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 555666666688877
No 280
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.56 E-value=1.1e+02 Score=37.39 Aligned_cols=133 Identities=18% Similarity=0.072 Sum_probs=74.3
Q ss_pred hchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCCh
Q 001690 669 NDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDI 748 (1028)
Q Consensus 669 ~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~ 748 (1028)
+++-+.+-+++...++-+|...+-.+..-- .+. ...+++..|+..--++.+++++.+|+.+|+-+...++
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy-~GT---------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAY-VGT---------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHH-hcc---------CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence 344444445777777777666554333111 111 1235677777764444445888888888887776666
Q ss_pred HHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCC-CChHHHHHHhhcCCHHHHHHHhhcCC
Q 001690 749 YVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDP-TKPELQRQVGKLEVYPSLIRVLSTGS 827 (1028)
Q Consensus 749 ~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~-~~~~~~~~i~~~~~i~~Lv~lL~s~~ 827 (1028)
+. ++..+.+|.+. +++.+.-+++-+|--.+++ .+.+. |.+|-.+.++..
T Consensus 588 ~~---------~~s~V~lLses------------~N~HVRyGaA~ALGIaCAGtG~~eA---------i~lLepl~~D~~ 637 (929)
T KOG2062|consen 588 EQ---------LPSTVSLLSES------------YNPHVRYGAAMALGIACAGTGLKEA---------INLLEPLTSDPV 637 (929)
T ss_pred hh---------chHHHHHHhhh------------cChhhhhhHHHHHhhhhcCCCcHHH---------HHHHhhhhcChH
Confidence 54 67777777752 2355555555555554432 33332 223333334444
Q ss_pred HHHHHHHHHHHHhh
Q 001690 828 SLAKQRAASALADL 841 (1028)
Q Consensus 828 ~~vk~~Aa~aL~~l 841 (1028)
.-||+.|..+++-+
T Consensus 638 ~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 638 DFVRQGALIALAMI 651 (929)
T ss_pred HHHHHHHHHHHHHH
Confidence 55777777777644
No 281
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=81.08 E-value=4.4 Score=34.20 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=57.3
Q ss_pred HHHHHHHHhccccCchhHHHHHHcCCchhHHHhh-cCCCHHHHHHHHHHHHHhhcCcchHHHHhhCC
Q 001690 469 SQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF-NRGSQETRALMASALRNMRLDESSIKTLKDRQ 534 (1028)
Q Consensus 469 ~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g 534 (1028)
.+.|++++.|++..+.....+-+.++++.++++. .++...+|--|..+|+-++.+.++...+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5678999999999988888888889999999998 46667889999999999999999988887765
No 282
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=1.4 Score=50.35 Aligned_cols=69 Identities=26% Similarity=0.468 Sum_probs=42.7
Q ss_pred CcccCcCcc-ccccCc---eEccCcccchHHHHHHHHhc-----CCCCCCC--ccccccccCCcCccchhhhHHHHHHhh
Q 001690 259 ESLVCPLCN-ELMEDP---VAIVCGHSFERKAIQEHFQR-----GGKNCPT--CRQELLSLDLMPNLSLRSSIEEWKQRE 327 (1028)
Q Consensus 259 ~~~~Cpic~-~~~~dP---v~~~cght~c~~ci~~~~~~-----~~~~CP~--~~~~l~~~~l~~n~~l~~~i~~~~~~~ 327 (1028)
....|+||. +.+... .+..|||.||..|+.+++.. ....||. |...++..... +..-..+.+.|....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~-~llt~kl~e~~e~~~ 223 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCR-KLLTPKLREMWEQRL 223 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHh-hhcCHHHHHHHHHHH
Confidence 368899999 433321 24579999999999999972 2357776 55555443321 122225667776654
Q ss_pred h
Q 001690 328 I 328 (1028)
Q Consensus 328 ~ 328 (1028)
.
T Consensus 224 ~ 224 (384)
T KOG1812|consen 224 K 224 (384)
T ss_pred H
Confidence 3
No 283
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=1.1 Score=39.38 Aligned_cols=27 Identities=30% Similarity=0.636 Sum_probs=23.3
Q ss_pred cCcccchHHHHHHHHhcCCCCCCCcccc
Q 001690 277 VCGHSFERKAIQEHFQRGGKNCPTCRQE 304 (1028)
Q Consensus 277 ~cght~c~~ci~~~~~~~~~~CP~~~~~ 304 (1028)
.|.|.|--.||.+|++ ....||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlk-tr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK-TRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHh-hcCcCCCcCcc
Confidence 6999999999999998 45579999764
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.54 E-value=34 Score=42.03 Aligned_cols=314 Identities=13% Similarity=0.113 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccCCchhHHHHHHHHhhhchhhhhhhhc-----ccchHHHH
Q 001690 383 TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGN-----TKDCITIM 457 (1028)
Q Consensus 383 ~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~e~~~~A~~~L~~Ls~~~~~~~~i~~-----~~g~I~~L 457 (1028)
+..+.-.+...++.|+.+. ..-..+++.|+|..+..+=+-.+.-.-.-.+|+.++.....-+.+.. ...++..-
T Consensus 366 d~~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~vpr~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~ 444 (1516)
T KOG1832|consen 366 DSPLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLA 444 (1516)
T ss_pred cccccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcCCCchhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHH
Confidence 3344456777888888877 55667788888877766544333333334556666554433333322 12344455
Q ss_pred HHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCC--------C---HH--------HHHHHHHHHH
Q 001690 458 VSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRG--------S---QE--------TRALMASALR 518 (1028)
Q Consensus 458 v~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~--------~---~~--------~~~~a~~~L~ 518 (1028)
+.+|.........+++..+...-........+-...++..|+.+|++- + ++ .....+.+|.
T Consensus 445 ~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR 524 (1516)
T KOG1832|consen 445 IELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALR 524 (1516)
T ss_pred HHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHH
Confidence 566665444455554433322111111112222335666777666421 0 11 1112223333
Q ss_pred H-----hh-cCcchHHHHhhCCcHHHHHHHhcCCC------HHHHHHHHHHHHHHhcCC--------HhHHHHHhCCCcH
Q 001690 519 N-----MR-LDESSIKTLKDRQFIHNVIQMLSSNS------PVCKSACLKCIKTLIAHS--------KMVKHLLLDPATI 578 (1028)
Q Consensus 519 ~-----La-~~~~~~~~i~~~g~i~~Lv~lL~s~~------~~~~~~A~~aL~nL~~~~--------~~~~~lv~~~g~v 578 (1028)
. |. .-+..++.-++.|+++..+.-+..+. ....+..++-+-.+-... +....+.+. |++
T Consensus 525 ~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkl-s~v 603 (1516)
T KOG1832|consen 525 QYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKL-SGV 603 (1516)
T ss_pred HHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHh-HHH
Confidence 2 21 22333555555666666666554332 122233333332222111 334445555 888
Q ss_pred HHHHHHHhccCC------ChhHHHHHHHHHHHHHcCCCCCcccccccchhhccc-ccHHHHHHHhc----CCCHHHHHHH
Q 001690 579 PLLLGLIQFVRS------DPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSE-HNVNVFLQLIA----NTERETKIQF 647 (1028)
Q Consensus 579 ~~L~~lL~~~~~------~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~-g~v~~Lv~lL~----~~~~~~~~~a 647 (1028)
..++++...... +..+...|..+|.-+..-+.-+..+. +......+. .++..++..-. -.+|+++..|
T Consensus 604 ~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La-~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~A 682 (1516)
T KOG1832|consen 604 VTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALA-HATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPA 682 (1516)
T ss_pred HHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHH-HHHhhcccccCceEEEeecccccccccCHHHHHHH
Confidence 888888875432 12344555555443333221111000 000000000 01111111111 1267777777
Q ss_pred HHHHHHhhcCC-----------------------------------HHHHHHHHhhhchHHHHHhhhcCCCh-----hHH
Q 001690 648 LHLLVKLCYKS-----------------------------------EKVRNLIESNNDAITQLFSSLDSDQP-----VVR 687 (1028)
Q Consensus 648 ~~aL~~L~~~~-----------------------------------~~~~~~i~~~~g~v~~Lv~Ll~~~~~-----~v~ 687 (1028)
+.++.++...+ ...+..++. .+||..|+.|++-..+ .+|
T Consensus 683 L~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~-ndGIkiLl~Ll~~k~P~t~aD~IR 761 (1516)
T KOG1832|consen 683 LNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG-NDGIKILLKLLQYKNPPTTADCIR 761 (1516)
T ss_pred HhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc-CccHHHHHHHHhccCCCCcHHHHH
Confidence 77776654322 234566777 8999999999987654 689
Q ss_pred HHHHHHHHHhcCC
Q 001690 688 RWAMRLIHCISEG 700 (1028)
Q Consensus 688 ~~A~~~L~~Ls~~ 700 (1028)
..|+++|--|+++
T Consensus 762 alAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 762 ALACRVLLGLARD 774 (1516)
T ss_pred HHHHHHHhccccC
Confidence 9999999999953
No 285
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=80.53 E-value=1.1e+02 Score=34.68 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc--C----HHHHHHHHHHHHHHhcccHHHHHHHH-Hhch
Q 001690 342 DDQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD--T----RLSTEAILKCLYFLAKYSDIHKEAIV-EAGA 413 (1028)
Q Consensus 342 ~~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s--~----~~~~~~A~~~L~~Ls~~~~~~k~~i~-~~g~ 413 (1028)
.+.+...+++..||++. .++..|....+....-.+.+.+.. . .+++.-=+..|.-++.-..+.|..+. +.++
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 45678899999999999 999999988887666666655433 1 12222333444444444435666654 4788
Q ss_pred hHHHHHhhccC
Q 001690 414 VRRIVKQICKG 424 (1028)
Q Consensus 414 i~~lv~~L~~~ 424 (1028)
++.+-+.|.+.
T Consensus 189 l~~lt~~led~ 199 (532)
T KOG4464|consen 189 LELLTNWLEDK 199 (532)
T ss_pred cHHHHHHhhcc
Confidence 88777777654
No 286
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.51 E-value=61 Score=35.86 Aligned_cols=108 Identities=12% Similarity=0.250 Sum_probs=68.6
Q ss_pred chHHHHH-HHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc-Cc-chHH
Q 001690 452 DCITIMV-SLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRL-DE-SSIK 528 (1028)
Q Consensus 452 g~I~~Lv-~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~-~~~~ 528 (1028)
+.+..|| .-+++.++.+++.|+.+|.-.|.-+.. ++.. .++.+...+..+++.++..|+.++..+.. +. +.-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a~~-~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LAKE-HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4455555 556788999999999999988766542 2221 36678888877899999999999998832 21 1111
Q ss_pred H-------HhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 001690 529 T-------LKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIA 563 (1028)
Q Consensus 529 ~-------i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~ 563 (1028)
. ......+..+.+.|.+.+++++..|+..+..|-.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1 1112344555556666666666666666665533
No 287
>PRK14707 hypothetical protein; Provisional
Probab=80.47 E-value=2.5e+02 Score=38.83 Aligned_cols=389 Identities=13% Similarity=0.070 Sum_probs=188.6
Q ss_pred HHhcCChhhhHHHHhhccHHHHHHHHhc---CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---Cchh
Q 001690 355 KNIMELPQYAEKAAKAGLIPKLVEFLKD---TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMP 428 (1028)
Q Consensus 355 ~~l~~~~~~r~~i~~~g~ip~Lv~lL~s---~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~ 428 (1028)
..+|..+.-+..+ ...+|-.++.-++. +++.+..+...-..++.++ .. ..-++..++-..++-|+.. ..-.
T Consensus 190 ~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~-~l-~~~~~~q~va~~lN~lsKwp~~~~C~ 266 (2710)
T PRK14707 190 ALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADES-RL-RNELKPQELGNALNALSKWADTPVCA 266 (2710)
T ss_pred HHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcH-HH-HHhCChHHHHHHHHHHhcCCCchHHH
Confidence 4455333333333 34456666666655 4444444444334444443 33 2223455566666666655 3444
Q ss_pred HHHHHHH-HhhhchhhhhhhhcccchHHHHHHHhh-cCChhhHHHHH-HHHhccccCchhHHHHHHcCCchhHHHhh-cC
Q 001690 429 EAIEVLS-ELTKRETLGEKIGNTKDCITIMVSLLH-NNNPNLSQKAH-DVLQNLSHNTHFAVKMAEAGYFQPFVACF-NR 504 (1028)
Q Consensus 429 ~A~~~L~-~Ls~~~~~~~~i~~~~g~I~~Lv~lL~-~~~~~~~~~a~-~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL-~~ 504 (1028)
+++..|. .+..+...+..+.. ..+...++-|+ =.+..+-..|+ ..-..|..+.+-+..+ +.-.+...+.-| +-
T Consensus 267 ~a~~~lA~rl~~~~~l~~al~~--q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKW 343 (2710)
T PRK14707 267 AAASALAERLVDDPGLRKALDP--INVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKW 343 (2710)
T ss_pred HHHHHHHHHHhhhHHHHHhcCH--HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcC
Confidence 5555544 45666666666654 33344444443 34444444444 4444565554444333 232333444444 44
Q ss_pred CCHHHHHHHHHHHHH-hhcCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHH-HHHhcCCHhHHHHHhCCCcHHHH
Q 001690 505 GSQETRALMASALRN-MRLDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCI-KTLIAHSKMVKHLLLDPATIPLL 581 (1028)
Q Consensus 505 ~~~~~~~~a~~~L~~-La~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL-~nL~~~~~~~~~lv~~~g~v~~L 581 (1028)
++..+-..++.+|+. |..+++-+..+-..| +...+.-|+ =++..+...|+.+| ..+..+.+.+..+-- -+|..+
T Consensus 344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~--Q~van~ 420 (2710)
T PRK14707 344 PDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP--QGVSNA 420 (2710)
T ss_pred CCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch--hhHHHH
Confidence 555556666666665 577777777665444 455555554 35555555555555 445555555555444 356666
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHH
Q 001690 582 LGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEK 660 (1028)
Q Consensus 582 ~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~ 660 (1028)
+.-|....+ ...-..++..|+.-.....+ - ++.|--.+ |...++-++ =++..+-..++..|..=......
T Consensus 421 lnalsKWPd-~~~C~~aa~~lA~~la~d~~--l-----~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~ 491 (2710)
T PRK14707 421 LNALAKWPD-LPICGQAVSALAGRLAHDTE--L-----CKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERR 491 (2710)
T ss_pred HHHhhcCCc-chhHHHHHHHHHHHHhccHH--H-----HhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH
Confidence 666665533 33334445544433332211 1 11222222 233333333 33334444555555443344445
Q ss_pred HHHHHHhhhchHHHHHhhhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHH
Q 001690 661 VRNLIESNNDAITQLFSSLDSDQP-VVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGI 739 (1028)
Q Consensus 661 ~~~~i~~~~g~v~~Lv~Ll~~~~~-~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~ 739 (1028)
.++.+.- .+....|-.|.+-++. ...+.+.++-..+... ...... .+...+..+++-|....+......++..
T Consensus 492 l~~a~~~-q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~---~~l~~~--~~~~~~~~~lnalSKwp~s~~C~~A~~~ 565 (2710)
T PRK14707 492 LRKALKP-QEVVIALHSLSKWPDTPICAEAASALAERVVDE---LQLRKA--FDAHQVVNTLKALSKWPDKQLCAVAASG 565 (2710)
T ss_pred HHhhcCH-HHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc---hhhhhh--hhhHHHHHHHHhhhcCCchhHHHHHHHH
Confidence 6666665 6666777777777775 3344444444444411 112222 1233444555555544443444555555
Q ss_pred HhcCCCCChHHHHHHHhccchHHHHHHHH
Q 001690 740 ISQLPKDDIYVDEVLCKSEALKAIHEVIC 768 (1028)
Q Consensus 740 L~nL~~~~~~~~~~l~~~g~v~~L~~lL~ 768 (1028)
|+.+...+... ..-.+.-.|..+++.|.
T Consensus 566 iA~~l~~~~~~-~~~L~aq~Vs~llNaLS 593 (2710)
T PRK14707 566 LAERLADEPQL-PKDLHRQGVVIVLNALS 593 (2710)
T ss_pred HHHHhhcchhh-HHhhhhhHHHHHHHhhc
Confidence 55543333333 23334555666666665
No 288
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=80.43 E-value=26 Score=40.16 Aligned_cols=134 Identities=18% Similarity=0.321 Sum_probs=87.8
Q ss_pred hHHHHHHHhhcC---ChhhHHHHHHHHhccccCch-hHHHHHHcCCchhHHHhhc-CC---CHHHHHHHHHHHHHhhcCc
Q 001690 453 CITIMVSLLHNN---NPNLSQKAHDVLQNLSHNTH-FAVKMAEAGYFQPFVACFN-RG---SQETRALMASALRNMRLDE 524 (1028)
Q Consensus 453 ~I~~Lv~lL~~~---~~~~~~~a~~~L~nL~~~~~-n~~~i~~~G~v~~Lv~lL~-~~---~~~~~~~a~~~L~~La~~~ 524 (1028)
.+..|...+++. .+.+--.|+..+...-.++. ....+.++|.++.++..+. .+ +.++-...-.+|..|+.+.
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~ 186 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN 186 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH
Confidence 345555556554 24666788888888877765 4555668899999999887 43 4455555557788889999
Q ss_pred chHHHHhhCCcHHHHHHHhcCCCHH--HHH-HHHHH----HHHHhcCCHh-HHHHHhCCCcHHHHHHHHhcc
Q 001690 525 SSIKTLKDRQFIHNVIQMLSSNSPV--CKS-ACLKC----IKTLIAHSKM-VKHLLLDPATIPLLLGLIQFV 588 (1028)
Q Consensus 525 ~~~~~i~~~g~i~~Lv~lL~s~~~~--~~~-~A~~a----L~nL~~~~~~-~~~lv~~~g~v~~L~~lL~~~ 588 (1028)
.+.+.+.+.+.++.+++++.++..- .+. ..+.. +-.|.++.+. +..+++ .++..+-++..-+
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~--~ii~~l~~l~~~g 256 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID--AIIKILDRLVELG 256 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH--HHHHHHHHHHHHh
Confidence 9999999999999999999876522 111 23333 3445666543 444444 2444444444433
No 289
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.26 E-value=6.5 Score=40.21 Aligned_cols=142 Identities=12% Similarity=0.154 Sum_probs=97.1
Q ss_pred hHHHHHHHHhhhchhhhhhhhcccchHHH-HHHHhh---c--CChhhHHHHHHHHhccccCch--hHHHHHHcCCchhHH
Q 001690 428 PEAIEVLSELTKRETLGEKIGNTKDCITI-MVSLLH---N--NNPNLSQKAHDVLQNLSHNTH--FAVKMAEAGYFQPFV 499 (1028)
Q Consensus 428 ~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~-Lv~lL~---~--~~~~~~~~a~~~L~nL~~~~~--n~~~i~~~G~v~~Lv 499 (1028)
-+|+..|.-++.+++.+..+.+ .-||. |-..|. + .-+-.+..++..+..|..++. ....+....+||.++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~--AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLD--AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHhcCcchheeeee--cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 4566677777888887777765 22332 223332 1 123455677777777776653 445556778999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhh----CCc----HHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHhHHH
Q 001690 500 ACFNRGSQETRALMASALRNMRLDESSIKTLKD----RQF----IHNVIQ-MLSSNSPVCKSACLKCIKTLIAHSKMVKH 570 (1028)
Q Consensus 500 ~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~----~g~----i~~Lv~-lL~s~~~~~~~~A~~aL~nL~~~~~~~~~ 570 (1028)
+.+..|++-.+.-|+.++..+-.++.+-..+.+ .-+ +..++. +.+.++.+..++++++-..||..+..+..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 999999999999999999998888887776654 122 223332 34567888899999999999888776654
Q ss_pred H
Q 001690 571 L 571 (1028)
Q Consensus 571 l 571 (1028)
+
T Consensus 276 L 276 (315)
T COG5209 276 L 276 (315)
T ss_pred H
Confidence 3
No 290
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.77 E-value=64 Score=39.00 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=73.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCC
Q 001690 628 NVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPL 707 (1028)
Q Consensus 628 ~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~ 707 (1028)
.+..++.-..+.+..++..++..|..+..+...+-..+.. +....+..-+....+.||..|+.+|+.+-++ +..+
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~de-- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PKDE-- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CCCC--
Confidence 3444444555777889999999998887755333333333 5555666666677889999999999999842 2211
Q ss_pred CCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcC
Q 001690 708 PPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQL 743 (1028)
Q Consensus 708 ~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL 743 (1028)
.......++.++.++++++++.+|+..|++=
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~vd 191 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNISVD 191 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhccC
Confidence 1245777888889988889998887766653
No 291
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.73 E-value=46 Score=40.13 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=74.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCc
Q 001690 534 QFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQ 613 (1028)
Q Consensus 534 g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~ 613 (1028)
|.+..|++-..+++..+|..++..|.-|..+......-+-. +....|..-+.... +.++..|+-+|..+-..+.+.+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dre--p~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDRE--PNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccC--chHHHHHHHHHHHHhcCCCCCc
Confidence 45666667777889999999999999998865444444444 66667766666544 5778899999999887665544
Q ss_pred ccccccchhhcccccHHHHHHHhc-CCCHHHHHHHHHHH
Q 001690 614 FELHHGLQELQSEHNVNVFLQLIA-NTERETKIQFLHLL 651 (1028)
Q Consensus 614 ~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~aL 651 (1028)
. .++..++.+++ .++++++..++..+
T Consensus 162 ~------------~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 162 C------------PVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred c------------cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 3 46778888888 67888988765543
No 292
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=79.58 E-value=1.7e+02 Score=36.48 Aligned_cols=181 Identities=13% Similarity=0.095 Sum_probs=107.6
Q ss_pred HHHHHhcCC-HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHH
Q 001690 557 CIKTLIAHS-KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQL 635 (1028)
Q Consensus 557 aL~nL~~~~-~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~l 635 (1028)
+||++.... +++..+++. |++..+.+.+..- ....++..+..++.|++......+.. .....--...+-.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~-~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~------~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDN-GGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELL------MIFEFIDFSVFKVL 565 (699)
T ss_pred HHHhhhcCCHHHHHHHHhc-ccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhh------hHHHHHHHHHHHHH
Confidence 899998775 778888888 9999999999976 34678899999999999855332210 00000000122223
Q ss_pred hc-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 001690 636 IA-NTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKE 714 (1028)
Q Consensus 636 L~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~ 714 (1028)
+. ..+.+.-++++.+|..+..+.+. .....-+..+...+...........+... ..
T Consensus 566 ~~~w~~~ersY~~~siLa~ll~~~~~--------------------~~~~~~r~~~~~~l~e~i~~~~~~~~~~~---~~ 622 (699)
T KOG3665|consen 566 LNKWDSIERSYNAASILALLLSDSEK--------------------TTECVFRNSVNELLVEAISRWLTSEIRVI---ND 622 (699)
T ss_pred HhhcchhhHHHHHHHHHHHHHhCCCc--------------------CccccchHHHHHHHHHHhhccCccceeeh---hh
Confidence 33 23335555666666666554321 00112233333333322212222222111 11
Q ss_pred ccHHH-HHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHH
Q 001690 715 TAINT-VAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVIC 768 (1028)
Q Consensus 715 ~~i~~-Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~ 768 (1028)
....+ +.+++..+..+..+..|+.++.++...+++..+.+.+.|+++.+.+.-.
T Consensus 623 ~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 623 RSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred hhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 22333 5566666666677889999999999989998888999999888776654
No 293
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=79.52 E-value=76 Score=36.50 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=95.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcC----cchHHHHhhCCcHHHHHHHhcCCC-------HHHHHHHHHHHHHHhcCCH
Q 001690 498 FVACFNRGSQETRALMASALRNMRLD----ESSIKTLKDRQFIHNVIQMLSSNS-------PVCKSACLKCIKTLIAHSK 566 (1028)
Q Consensus 498 Lv~lL~~~~~~~~~~a~~~L~~La~~----~~~~~~i~~~g~i~~Lv~lL~s~~-------~~~~~~A~~aL~nL~~~~~ 566 (1028)
+..+++..+++-|..+.-....+..+ ..+|+.+.++-|.+-+=++|.+++ ...+..++.+|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 55666667777777777666777543 346777899888888989997433 3457888999999999885
Q ss_pred --hHHHHHhCCCcHHHHHHHHhccCCC-----hhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCC
Q 001690 567 --MVKHLLLDPATIPLLLGLIQFVRSD-----PHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANT 639 (1028)
Q Consensus 567 --~~~~lv~~~g~v~~L~~lL~~~~~~-----~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 639 (1028)
....++. .||.|.+++..+.+. ..+.+.+-..|..++.... +...+...|+++.+.++-..+
T Consensus 96 lAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~--------G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 96 LASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA--------GLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred hccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc--------hhHHHHhcCchHHHHHHHhCC
Confidence 4566665 599999999876442 2256777777888887643 356788999999999876643
No 294
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=79.03 E-value=1.3 Score=47.38 Aligned_cols=44 Identities=30% Similarity=0.813 Sum_probs=35.3
Q ss_pred CcccCcCcccccc----CceEccCcccchHHHHHHHHhcCCCCCCCccc
Q 001690 259 ESLVCPLCNELME----DPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQ 303 (1028)
Q Consensus 259 ~~~~Cpic~~~~~----dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~ 303 (1028)
.++.||||.+.+. +|...+|||+--..|+++....+ .+||.|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3566999998654 56678999998888888877766 99999965
No 295
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=78.92 E-value=94 Score=33.01 Aligned_cols=175 Identities=13% Similarity=0.101 Sum_probs=98.8
Q ss_pred chhHHH-hhcCCCHHHHHHHHHHHHHhhcCc-chHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHH
Q 001690 495 FQPFVA-CFNRGSQETRALMASALRNMRLDE-SSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLL 572 (1028)
Q Consensus 495 v~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv 572 (1028)
++.|+. +-+..+++.+.....+|..++.++ .+... ++..|..+...++...+.-+.+.+..+-...+-.-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 345555 336778889999999999998776 44333 34556666667776666666666666644432111
Q ss_pred hCCCcHHHHHHHH--h------ccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHh-cCCCHHH
Q 001690 573 LDPATIPLLLGLI--Q------FVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLI-ANTERET 643 (1028)
Q Consensus 573 ~~~g~v~~L~~lL--~------~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~~ 643 (1028)
|.+..++..+ + .++.........+..+..+|...++ . ....++.+..+| ...++..
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~-----------g~~ll~~ls~~L~~~~~~~~ 138 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-H-----------GVDLLPLLSGCLNQSCDEVA 138 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-h-----------HHHHHHHHHHHHhccccHHH
Confidence 2233333330 1 1111122222334567788875543 1 234678888888 7888889
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCC-hhHHHHHHHHHHHhc
Q 001690 644 KIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQ-PVVRRWAMRLIHCIS 698 (1028)
Q Consensus 644 ~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~-~~v~~~A~~~L~~Ls 698 (1028)
+..++.++..||... +... ......+..-+..+. +.+...-+.++..+.
T Consensus 139 ~alale~l~~Lc~~~--vvd~----~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~ 188 (234)
T PF12530_consen 139 QALALEALAPLCEAE--VVDF----YSAWKVLQKKLSLDYRPLVLKSLCSLFALVP 188 (234)
T ss_pred HHHHHHHHHHHHHHh--hccH----HHHHHHHHHhcCCccchHHHHHHHHHHHHhc
Confidence 999999999999443 1111 223334444333333 345444444555444
No 296
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.56 E-value=27 Score=44.37 Aligned_cols=161 Identities=12% Similarity=0.177 Sum_probs=117.1
Q ss_pred cHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCC
Q 001690 535 FIHNVIQMLS----SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQ 610 (1028)
Q Consensus 535 ~i~~Lv~lL~----s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~ 610 (1028)
..|.++++.+ .++|..+.+|.-+|+.+..-.. .+.. -.+|.|+..+.... .+.++.+++..+..++-.-+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fce--s~l~llftimeksp-~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFCE--SHLPLLFTIMEKSP-SPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHHH--HHHHHHHHHHhcCC-Cceeeecchheccchhhhcc
Confidence 4677778885 3568999999999998854332 1222 37888999998543 36788888888888876432
Q ss_pred CCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHH
Q 001690 611 HPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWA 690 (1028)
Q Consensus 611 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A 690 (1028)
+. -+...+.|...|...++.++..|+.+|..|-.++ +|+- .|-+.-....+..++++++.-|
T Consensus 994 nl------------ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKV-KGql~eMA~cl~D~~~~IsdlA 1055 (1251)
T KOG0414|consen 994 NL------------IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKV-KGQLSEMALCLEDPNAEISDLA 1055 (1251)
T ss_pred cc------------cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHh-cccHHHHHHHhcCCcHHHHHHH
Confidence 11 1224578888999999999999999999996554 4554 7889999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 691 MRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 691 ~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
-..+.-|+.. ++.+. +.+|.++.-|.+++
T Consensus 1056 k~FF~Els~k--~n~iy-------nlLPdil~~Ls~~~ 1084 (1251)
T KOG0414|consen 1056 KSFFKELSSK--GNTIY-------NLLPDILSRLSNGN 1084 (1251)
T ss_pred HHHHHHhhhc--ccchh-------hhchHHHHhhccCc
Confidence 9888888832 22332 34666666666664
No 297
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=77.97 E-value=43 Score=36.32 Aligned_cols=175 Identities=16% Similarity=0.185 Sum_probs=105.3
Q ss_pred CchhHHHHHHHHhhhchhhhhhhhcccch-HHHHHHHhhc----CChhhHHHHHHHHhccccCchhHHHHHHc-C-Cchh
Q 001690 425 ETMPEAIEVLSELTKRETLGEKIGNTKDC-ITIMVSLLHN----NNPNLSQKAHDVLQNLSHNTHFAVKMAEA-G-YFQP 497 (1028)
Q Consensus 425 e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~-I~~Lv~lL~~----~~~~~~~~a~~~L~nL~~~~~n~~~i~~~-G-~v~~ 497 (1028)
+.+=-++-.++-+..++.....+....+. ...+..++.. ..+..+.-+++++.|+-.++..+..+... + .+..
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILE 157 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHH
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHH
Confidence 34444555555555555555555443333 4444555442 45678888999999999998888777754 3 3444
Q ss_pred HHHhhcCC----CHHHHHHHHHHHHHhhcC--cchHHHHhhCCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHhHH
Q 001690 498 FVACFNRG----SQETRALMASALRNMRLD--ESSIKTLKDRQFIHNVIQMLS--SNSPVCKSACLKCIKTLIAHSKMVK 569 (1028)
Q Consensus 498 Lv~lL~~~----~~~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nL~~~~~~~~ 569 (1028)
.+..+... +..++..++..+.|++.. ......=.+...+..+++.+. ..+++....++-+|++|...+....
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 44444443 678999999999998531 111000011113455555333 2689999999999999998887777
Q ss_pred HHHhCCCcHHHHHHHHhccCCChhHHHHHHH
Q 001690 570 HLLLDPATIPLLLGLIQFVRSDPHLKHEAAE 600 (1028)
Q Consensus 570 ~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~ 600 (1028)
...+..|+-..+...-.. ...+.+++.+..
T Consensus 238 ~~~~~l~~~~~~~~~~~~-~~e~ri~~v~~e 267 (268)
T PF08324_consen 238 QLAKSLDVKSVLSKKANK-SKEPRIKEVAAE 267 (268)
T ss_dssp HHCCCCTHHHHHHHHHHH-TTSHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHhc-ccchHHHHHhcc
Confidence 777753555444444432 333566655543
No 298
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=76.75 E-value=1.4 Score=44.85 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=40.1
Q ss_pred cccCcCccccccCceE-ccCcccchHHHHHHHHhc-CCCCCCC--ccccccccCCc
Q 001690 260 SLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQR-GGKNCPT--CRQELLSLDLM 311 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~~-~~~~CP~--~~~~l~~~~l~ 311 (1028)
+.+|||+++...-|.+ ..|.|-|++.-|...++. ....||. |.+....+.+.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v 244 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYV 244 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchh
Confidence 5799999998888976 589999999999998872 2257887 66665544444
No 299
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=76.74 E-value=1.3 Score=34.91 Aligned_cols=38 Identities=26% Similarity=0.644 Sum_probs=25.2
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHhc-CCCCCCCccc
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQR-GGKNCPTCRQ 303 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~-~~~~CP~~~~ 303 (1028)
+.|.||.|.+.+.. ..+.+-|.+++... ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 46999999884332 24556666666543 3468999975
No 300
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=76.72 E-value=60 Score=40.09 Aligned_cols=234 Identities=16% Similarity=0.199 Sum_probs=117.9
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHhccccCch----hHHHHHHcC---CchhHHHhhcCCCHHHHHHHHHHHHHhhcCc-
Q 001690 453 CITIMVSLLHNNNPNLSQKAHDVLQNLSHNTH----FAVKMAEAG---YFQPFVACFNRGSQETRALMASALRNMRLDE- 524 (1028)
Q Consensus 453 ~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~----n~~~i~~~G---~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~- 524 (1028)
.+-.|+.+|+.-+.+.......-+..-..... ....+..+| ++..+.+++.++.. ....++.+|..|....
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~-~~~ea~~~l~~l~~~~~ 426 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL-TDDEAAQLLASLPFHVR 426 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhhcC
Confidence 35566666665444433333333332211111 122333344 45556666655322 2234556666663322
Q ss_pred chHHHHhhCCcHHHHHHHhcC----CCHHHHHHHHHHHHHHhc----CC-------HhHHHHHhCCCcHHHHHHHHhcc-
Q 001690 525 SSIKTLKDRQFIHNVIQMLSS----NSPVCKSACLKCIKTLIA----HS-------KMVKHLLLDPATIPLLLGLIQFV- 588 (1028)
Q Consensus 525 ~~~~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nL~~----~~-------~~~~~lv~~~g~v~~L~~lL~~~- 588 (1028)
.-... .+..+..|+.+ .++.++..|+-+++.|.. .. .....+.+ ..++.|...+...
T Consensus 427 ~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~ 499 (618)
T PF01347_consen 427 RPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIE--KYVPYLEQELKEAV 499 (618)
T ss_dssp ---HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--G--GGTHHHHHHHHHHH
T ss_pred CCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHH--HHHHHHHHHHHHHh
Confidence 21122 34455555553 456778888888877743 31 11222333 4777788777732
Q ss_pred -CCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCCHHHHHH
Q 001690 589 -RSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANT---ERETKIQFLHLLVKLCYKSEKVRNL 664 (1028)
Q Consensus 589 -~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~~ 664 (1028)
..+..-+..+..+|.|+-. ...++.|..++... +..++..|+.+|..++...+.
T Consensus 500 ~~~~~~~~~~~LkaLgN~g~------------------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~---- 557 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLGH------------------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE---- 557 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT-------------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH----
T ss_pred hccCHHHHHHHHHHhhccCC------------------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH----
Confidence 1112334556666777643 13688888888866 677888999999988655431
Q ss_pred HHhhhchHHHHHhhhcCC--ChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHH
Q 001690 665 IESNNDAITQLFSSLDSD--QPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERS 734 (1028)
Q Consensus 665 i~~~~g~v~~Lv~Ll~~~--~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~ 734 (1028)
.+.+.|..+..+. +.++|.+|..+|..-- + ....+..+...+....+..+..
T Consensus 558 -----~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P----------~~~~l~~i~~~l~~E~~~QV~s 611 (618)
T PF01347_consen 558 -----KVREILLPIFMNTTEDPEVRIAAYLILMRCN---P----------SPSVLQRIAQSLWNEPSNQVAS 611 (618)
T ss_dssp -----HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------------HHHHHHHHHHHTT-S-HHHHH
T ss_pred -----HHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---C----------CHHHHHHHHHHHhhCchHHHHH
Confidence 3344566655543 3489998877666542 2 1345777888887766544443
No 301
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.64 E-value=95 Score=37.78 Aligned_cols=157 Identities=12% Similarity=0.094 Sum_probs=94.4
Q ss_pred HHHH-HHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCccc
Q 001690 537 HNVI-QMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFE 615 (1028)
Q Consensus 537 ~~Lv-~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~ 615 (1028)
.+++ +++++.+|-.|.....++.-- ...... . ++|..|+..--++. +.++++.|+.+|.-++..+.
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alA-y~GTgn-----n-kair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp----- 587 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALA-YVGTGN-----N-KAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDP----- 587 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHH-HhccCc-----h-hhHHHhhccccccc-chHHHHHHHHHheeeEecCh-----
Confidence 3443 355666676666665554331 111111 1 45555555532222 25788888888887776543
Q ss_pred ccccchhhcccccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHH
Q 001690 616 LHHGLQELQSEHNVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLI 694 (1028)
Q Consensus 616 ~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L 694 (1028)
..++..|++|. +-+|.++.-++.+|.=-|.+... ..++..|-.|...+..-||..|+-++
T Consensus 588 -----------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------~eAi~lLepl~~D~~~fVRQgAlIa~ 648 (929)
T KOG2062|consen 588 -----------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------KEAINLLEPLTSDPVDFVRQGALIAL 648 (929)
T ss_pred -----------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------HHHHHHHhhhhcChHHHHHHHHHHHH
Confidence 24677888887 78899999999998776665522 23445555566666678999999888
Q ss_pred HHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCC
Q 001690 695 HCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPD 729 (1028)
Q Consensus 695 ~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~ 729 (1028)
.-+.-++.+ ..... -.+..+.+.+++.+...
T Consensus 649 amIm~Q~t~-~~~pk---v~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 649 AMIMIQQTE-QLCPK---VNGFRKQLEKVINDKHE 679 (929)
T ss_pred HHHHHhccc-ccCch---HHHHHHHHHHHhhhhhh
Confidence 877633332 22222 13455566666666553
No 302
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.36 E-value=1.1 Score=53.44 Aligned_cols=63 Identities=24% Similarity=0.589 Sum_probs=46.6
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHhc--CCCCCCCccccccccCCcCccchhhhHH
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQR--GGKNCPTCRQELLSLDLMPNLSLRSSIE 321 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~--~~~~CP~~~~~l~~~~l~~n~~l~~~i~ 321 (1028)
..+.||||.....+|+.+.|-|.||+.|+-.-|.. +...||.|+.........--.....+++
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSK 84 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHH
Confidence 46889999999999999999999999999876653 3468999986665544433333333443
No 303
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=76.04 E-value=36 Score=35.04 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=75.4
Q ss_pred hhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcC-----CCHHHHHHHHHHHHHhhcCc--chHHHHhhCCcHHHH
Q 001690 467 NLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNR-----GSQETRALMASALRNMRLDE--SSIKTLKDRQFIHNV 539 (1028)
Q Consensus 467 ~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~-----~~~~~~~~a~~~L~~La~~~--~~~~~i~~~g~i~~L 539 (1028)
.-..+|+..|.-++++++.+..++++..---|..+|.. .-+-++..+.++++.|..++ +....+....++|..
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34457888889999999999999888653344555532 22347788889999996543 344556668899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCHhHH
Q 001690 540 IQMLSSNSPVCKSACLKCIKTLIAHSKMVK 569 (1028)
Q Consensus 540 v~lL~s~~~~~~~~A~~aL~nL~~~~~~~~ 569 (1028)
++++..++.-.+..|+.++..+-.++...+
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLq 224 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQ 224 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence 999999999999999888877765554333
No 304
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=76.00 E-value=2.9 Score=35.00 Aligned_cols=48 Identities=17% Similarity=0.528 Sum_probs=23.8
Q ss_pred CcccCcCccccc-----cCceEc--cCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNELM-----EDPVAI--VCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~~-----~dPv~~--~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
..-.|.||.+-. -+|++. .|+--.||.|.+-=.+.|+..||.|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 456799998743 256653 689899999998777888999999997764
No 305
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=75.87 E-value=5.1 Score=41.74 Aligned_cols=80 Identities=20% Similarity=0.190 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhhchhhhhhhhcc------cchHHHHHHHhh-cCChhhHHHHHHHHhccccCchhHHHH--HHcCCchh
Q 001690 427 MPEAIEVLSELTKRETLGEKIGNT------KDCITIMVSLLH-NNNPNLSQKAHDVLQNLSHNTHFAVKM--AEAGYFQP 497 (1028)
Q Consensus 427 ~~~A~~~L~~Ls~~~~~~~~i~~~------~g~I~~Lv~lL~-~~~~~~~~~a~~~L~nL~~~~~n~~~i--~~~G~v~~ 497 (1028)
++.|+++|.+|+..+.|.+.|..+ ...+..|+++|. .+++-.++-|+..|.||+..++...++ .+.+.|..
T Consensus 141 qrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~ 220 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISH 220 (257)
T ss_pred HHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHH
Confidence 455555555555555555444432 123445566665 568889999999999999988654433 36799999
Q ss_pred HHHhhcCCC
Q 001690 498 FVACFNRGS 506 (1028)
Q Consensus 498 Lv~lL~~~~ 506 (1028)
|+.++.+..
T Consensus 221 Li~FiE~a~ 229 (257)
T PF12031_consen 221 LIAFIEDAE 229 (257)
T ss_pred HHHHHHHHH
Confidence 999996543
No 306
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.55 E-value=1.3e+02 Score=36.83 Aligned_cols=232 Identities=14% Similarity=0.150 Sum_probs=118.8
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccC---chhHHHHHHcC---CchhHHHhhcCCCHHHHHHHHHHHHHh---h
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHN---THFAVKMAEAG---YFQPFVACFNRGSQETRALMASALRNM---R 521 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~---~~n~~~i~~~G---~v~~Lv~lL~~~~~~~~~~a~~~L~~L---a 521 (1028)
...+-.||++|+.-+.+.......-+.. ... .-....+..+| ++..+.+.+.++.... ..++.++..+ .
T Consensus 310 ~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~ 387 (574)
T smart00638 310 AAKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhh
Confidence 4566677777776555544444444333 110 11233334444 4445555565543211 2333333333 1
Q ss_pred cCcchHHHHhhCCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhc----CCHhH-HHHHhCCCcHHHHHHHHhccCC--
Q 001690 522 LDESSIKTLKDRQFIHNVIQMLSSN----SPVCKSACLKCIKTLIA----HSKMV-KHLLLDPATIPLLLGLIQFVRS-- 590 (1028)
Q Consensus 522 ~~~~~~~~i~~~g~i~~Lv~lL~s~----~~~~~~~A~~aL~nL~~----~~~~~-~~lv~~~g~v~~L~~lL~~~~~-- 590 (1028)
..|. ...+..+..++.++ .+.++..|+-+++++.. +.+.. ..+++ ..++.|.+.|.....
T Consensus 388 ~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 458 (574)
T smart00638 388 RYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE--ELLKYLHELLQQAVSKG 458 (574)
T ss_pred hcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH--HHHHHHHHHHHHHHhcC
Confidence 1221 12355666677643 45667777777777643 32221 22333 367777777754311
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc---CCCHHHHHHHHHHHHHhhcCCHHHHHHHHh
Q 001690 591 DPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA---NTERETKIQFLHLLVKLCYKSEKVRNLIES 667 (1028)
Q Consensus 591 ~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~---~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~ 667 (1028)
+..-+.....+|.|+.. ...++.|..++. ..++.++..|+.+|..++...+
T Consensus 459 ~~~~~~~~LkaLGN~g~------------------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-------- 512 (574)
T smart00638 459 DEEEIQLYLKALGNAGH------------------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-------- 512 (574)
T ss_pred CchheeeHHHhhhccCC------------------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------
Confidence 11111223333444332 124556666665 3456789999999998875332
Q ss_pred hhchHHHHHhhhcC--CChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHH
Q 001690 668 NNDAITQLFSSLDS--DQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEER 733 (1028)
Q Consensus 668 ~~g~v~~Lv~Ll~~--~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~ 733 (1028)
...-+.|+.+..+ .++++|..|..+|...- |. ...+..++..+....+..+.
T Consensus 513 -~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~---P~----------~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 513 -RKVQEVLLPIYLNRAEPPEVRMAAVLVLMETK---PS----------VALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred -hHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CC----------HHHHHHHHHHHhhcCcHHHH
Confidence 1233345554444 34589998887776543 21 24577777777776654443
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.08 E-value=1.1e+02 Score=38.04 Aligned_cols=396 Identities=11% Similarity=0.093 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhc--cC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhh
Q 001690 388 EAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQIC--KG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLH 462 (1028)
Q Consensus 388 ~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~--~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~ 462 (1028)
+..+.+|-.|..+. +.-..+.+.|.=..++-+.. +. ...-.+...|..|..+......+.. .|+|..|...=+
T Consensus 327 ~~~~q~l~~lgey~-e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~-~~gi~kll~vpr 404 (1516)
T KOG1832|consen 327 KYCIQCLEILGEYV-EVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVE-RRGILKLLAVPR 404 (1516)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHH-hhhhHHHhcCCC
Confidence 34566777777666 44444555554333332222 11 4456678888888888888888877 577776655422
Q ss_pred cCChhhHHHHHHHHhccccCchhHHHHHH------cCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcH
Q 001690 463 NNNPNLSQKAHDVLQNLSHNTHFAVKMAE------AGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFI 536 (1028)
Q Consensus 463 ~~~~~~~~~a~~~L~nL~~~~~n~~~i~~------~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i 536 (1028)
....-.....+|+.+......-.++.. ..+|..-+.+|.-.....+.+++-..+........-..+-...++
T Consensus 405 --~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l 482 (1516)
T KOG1832|consen 405 --VSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSL 482 (1516)
T ss_pred --chhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 112222333566777666554333322 223444455554333333333332211111111111122224556
Q ss_pred HHHHHHhcC--------CC---H--------HHHHHHHHHHHHH-----hcCCHh-HHHHHhCCCcHHHHHHHHhccCCC
Q 001690 537 HNVIQMLSS--------NS---P--------VCKSACLKCIKTL-----IAHSKM-VKHLLLDPATIPLLLGLIQFVRSD 591 (1028)
Q Consensus 537 ~~Lv~lL~s--------~~---~--------~~~~~A~~aL~nL-----~~~~~~-~~~lv~~~g~v~~L~~lL~~~~~~ 591 (1028)
..|+.+|+. .+ + ..-.+.+.+|..- ...-++ +..-+.. |.++..+.-+..+..+
T Consensus 483 ~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r-~~~g~~~~~i~~~~~P 561 (1516)
T KOG1832|consen 483 QKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISR-GGVGSSMKNIRAAYKP 561 (1516)
T ss_pred HHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhccc-CCCCccccccccCCCc
Confidence 666666641 11 1 1123344444332 222233 3333444 6666666544443332
Q ss_pred hh----HHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCC--------CHHHHHHHHHHHHHhhcCCH
Q 001690 592 PH----LKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANT--------ERETKIQFLHLLVKLCYKSE 659 (1028)
Q Consensus 592 ~~----l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--------~~~~~~~a~~aL~~L~~~~~ 659 (1028)
.. ..+...+-+-.+.+-........-+-...+...+++..++.+...+ -.++...|+.+|.-+..-+.
T Consensus 562 ~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~ 641 (1516)
T KOG1832|consen 562 LDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPD 641 (1516)
T ss_pred chhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecch
Confidence 11 1223333333333211100000000134577778888888887632 24566677777776665553
Q ss_pred HHHHHHHh-h------hchHHHHHhhhcC----CChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 660 KVRNLIES-N------NDAITQLFSSLDS----DQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 660 ~~~~~i~~-~------~g~v~~Lv~Ll~~----~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
++..+.. . ..|+..++.-... -+++++..|..++-|+. +.+..... ..+++...++.
T Consensus 642 -iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincV-c~pp~~r~----------s~i~~v~S~~g 709 (1516)
T KOG1832|consen 642 -IQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCV-CPPPTTRP----------STIVAVGSQSG 709 (1516)
T ss_pred -HHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheee-cCCCCcch----------hhhhhccccCC
Confidence 3333322 0 1233333332222 15689999999988887 33321111 11111112111
Q ss_pred CHHHHHHHHHHHhcCCCC------ChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCC
Q 001690 729 DVEERSLAAGIISQLPKD------DIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPT 802 (1028)
Q Consensus 729 ~~~~~~~a~~~L~nL~~~------~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~ 802 (1028)
.... .+..=++. -......+...+||..|++||+-. .+......+..-+..+|..++ .
T Consensus 710 ~~r~------~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k--------~P~t~aD~IRalAc~~L~GLa--R 773 (1516)
T KOG1832|consen 710 DRRI------FLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYK--------NPPTTADCIRALACRVLLGLA--R 773 (1516)
T ss_pred Cccc------cccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhcc--------CCCCcHHHHHHHHHHHHhccc--c
Confidence 1000 00000010 112346677889999999999841 122223445555788888888 4
Q ss_pred ChHHHHHHhhcCCH
Q 001690 803 KPELQRQVGKLEVY 816 (1028)
Q Consensus 803 ~~~~~~~i~~~~~i 816 (1028)
++.+++++.+.-.+
T Consensus 774 ~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 774 DDTVRQILTKLPLV 787 (1516)
T ss_pred CcHHHHHHHhCccc
Confidence 67777776654333
No 308
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=74.81 E-value=60 Score=37.21 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=75.3
Q ss_pred ccHHHHHHhccCCCC--HHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHH
Q 001690 715 TAINTVAAIFTCSPD--VEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIAL 792 (1028)
Q Consensus 715 ~~i~~Lv~lL~~~~~--~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~ 792 (1028)
..+..|..++.+... ..+-..|+.+++.+..+++..-..+.++|.++.+++-+... +. ....+++-.+-
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~-----~i----~~s~e~l~~lP 176 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK-----GI----LPSSEVLTSLP 176 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc-----CC----CCcHHHHHHHH
Confidence 445556677777652 36678899999999999999999999999999999999821 21 12345555555
Q ss_pred HHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCC
Q 001690 793 AALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGS 827 (1028)
Q Consensus 793 ~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~ 827 (1028)
.++..++ -|..-.+.+.+.+.++.+++++.+..
T Consensus 177 ~~l~Aic--LN~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 177 NVLSAIC--LNNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHhHHh--cCHHHHHHHHhcChHHHHHHHhCCHH
Confidence 5555555 57777788899999999999987654
No 309
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=74.77 E-value=97 Score=33.53 Aligned_cols=216 Identities=20% Similarity=0.239 Sum_probs=118.6
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhc-CChhhhHHHHhhccHHHHHHHHhc---CHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 001690 335 AIIKINSDDQSRRKSALEEMKNIM-ELPQYAEKAAKAGLIPKLVEFLKD---TRLSTEAILKCLYFLAKYSDIHKEAIVE 410 (1028)
Q Consensus 335 ~~~~L~s~~~~~~~~al~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL~s---~~~~~~~A~~~L~~Ls~~~~~~k~~i~~ 410 (1028)
+-+.|.++++..+.+|..-|..+. .-+... ....-+..|+.+..+ |...-..++.++..|.....-....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-- 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-- 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--
Confidence 445677888888888888887755 333221 222235556665544 55556566777777764331111111
Q ss_pred hchhHHHHHhhccC----CchhHHHHHHHHhhhc-hhhhhhhhcccchHHHHHHHhhc-CChhhHHHHHHHHhccccCch
Q 001690 411 AGAVRRIVKQICKG----ETMPEAIEVLSELTKR-ETLGEKIGNTKDCITIMVSLLHN-NNPNLSQKAHDVLQNLSHNTH 484 (1028)
Q Consensus 411 ~g~i~~lv~~L~~~----e~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~I~~Lv~lL~~-~~~~~~~~a~~~L~nL~~~~~ 484 (1028)
...+..++....-. ..|..+...|..+-.+ .+.-..++ .+.+..+++.+.. .||+....+...+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 11222333222211 5677777777777443 22333344 3678888888874 588888888887776654332
Q ss_pred ---hHHHHHHc--CCchhHHHhhcCCCH--HHHHHHHHHHHHh-hcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHH
Q 001690 485 ---FAVKMAEA--GYFQPFVACFNRGSQ--ETRALMASALRNM-RLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLK 556 (1028)
Q Consensus 485 ---n~~~i~~~--G~v~~Lv~lL~~~~~--~~~~~a~~~L~~L-a~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~ 556 (1028)
....+.+. -+.|.=..- ..+++ -.++.-..+|.+. +.++.- ..-++|.|++-|.++++.+|..++.
T Consensus 157 ~~~~~e~lFd~~~cYFPI~F~p-p~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 157 ISEFAEDLFDVFSCYFPITFRP-PPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred cchhHHHHHHHhhheeeeeeeC-CCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 22222221 111111000 01121 1333334445554 444332 2337899999999999999999999
Q ss_pred HHHHHhc
Q 001690 557 CIKTLIA 563 (1028)
Q Consensus 557 aL~nL~~ 563 (1028)
+|...+.
T Consensus 231 tL~~c~~ 237 (262)
T PF14500_consen 231 TLKACIE 237 (262)
T ss_pred HHHHHHH
Confidence 9988654
No 310
>PRK14707 hypothetical protein; Provisional
Probab=74.67 E-value=3.5e+02 Score=37.51 Aligned_cols=340 Identities=13% Similarity=0.072 Sum_probs=155.6
Q ss_pred hhccHHHHHHHHhc--CHHHHHHHHHHHH-HHhcccHHHHHHHHHhchhHHHHHhhccC----CchhHHHHHHHHhhhch
Q 001690 369 KAGLIPKLVEFLKD--TRLSTEAILKCLY-FLAKYSDIHKEAIVEAGAVRRIVKQICKG----ETMPEAIEVLSELTKRE 441 (1028)
Q Consensus 369 ~~g~ip~Lv~lL~s--~~~~~~~A~~~L~-~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~----e~~~~A~~~L~~Ls~~~ 441 (1028)
+...+-..++-|+. +...-.+|+..|. .++.+. ..+.. .....+...++-|+.- ..+..|..+-..|...+
T Consensus 245 ~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~a-l~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 245 KPQELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKA-LDPINVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHh-cCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence 33344445555544 4444444444443 333322 22222 2233334444444443 33444444455667766
Q ss_pred hhhhhhhcccchHHHHHHHhhc--CChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhh-cCCCHHHHHHHHHHHH
Q 001690 442 TLGEKIGNTKDCITIMVSLLHN--NNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF-NRGSQETRALMASALR 518 (1028)
Q Consensus 442 ~~~~~i~~~~g~I~~Lv~lL~~--~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~ 518 (1028)
+.+..+-. ..+...++-|+. ++..+...|...-..|+.+++-+..+--. +|...+.-| +-++...-..++..|+
T Consensus 323 ~l~~~~~~--~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 323 ELCKALNA--RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred hhhhccch--HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 76666553 344445555542 34445554444445566666655555433 344444444 5555566666777776
Q ss_pred H-hhcCcchHHHHhhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHH
Q 001690 519 N-MRLDESSIKTLKDRQFIHNVIQML-SSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKH 596 (1028)
Q Consensus 519 ~-La~~~~~~~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~ 596 (1028)
. +..+++-+..+-..|+ ..++.-| +=++..+...++.+|..--.++....+.+.- -.|...+.-++...+.+. -.
T Consensus 400 ~~l~~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p-~~va~~LnalSKWPd~p~-c~ 476 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGV-SNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDP-INVTQALDALSKWPDTPI-CG 476 (2710)
T ss_pred HHhccChhhhhhcchhhH-HHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcCh-HHHHHHHHHhhcCCCChh-HH
Confidence 6 4667777777766654 4444444 4467677777777775443343333333333 234445555555433222 23
Q ss_pred HHHHHHH-HHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHH
Q 001690 597 EAAEILA-LMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQL 675 (1028)
Q Consensus 597 ~a~~~L~-nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~L 675 (1028)
.++..|+ .|+.... -.+.+.-.++...|-.|-+-++...-..++..|..=...+......+.. .+....+
T Consensus 477 ~aa~~La~~l~~~~~--------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~-~~~~~~l 547 (2710)
T PRK14707 477 QTASALAARLAHERR--------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDA-HQVVNTL 547 (2710)
T ss_pred HHHHHHHHHhcccHH--------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhh-HHHHHHH
Confidence 3333333 3333211 0122333333344444444444332222222222111122233333333 2333334
Q ss_pred HhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCC
Q 001690 676 FSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPD 729 (1028)
Q Consensus 676 v~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~ 729 (1028)
-.|.++++...-+.|+..|..+.... ...... .....+..+++-|+.=.+
T Consensus 548 nalSKwp~s~~C~~A~~~iA~~l~~~--~~~~~~--L~aq~Vs~llNaLSKWP~ 597 (2710)
T PRK14707 548 KALSKWPDKQLCAVAASGLAERLADE--PQLPKD--LHRQGVVIVLNALSKWPD 597 (2710)
T ss_pred HhhhcCCchhHHHHHHHHHHHHhhcc--hhhHHh--hhhhHHHHHHHhhccCCC
Confidence 44566666554444444444432111 122222 233456666666665443
No 311
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.72 E-value=2.5 Score=34.41 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=31.5
Q ss_pred CceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccch
Q 001690 272 DPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSL 316 (1028)
Q Consensus 272 dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l 316 (1028)
|..+-...+|||..|.+.-+ +..||.|+..+..+..+|...|
T Consensus 21 dA~ICtfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 21 DARICTFECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred ceeEEEEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHH
Confidence 44444567899999998765 3579999999988777775443
No 312
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=73.41 E-value=23 Score=42.26 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HhHHHHHhCCCcHHHH
Q 001690 504 RGSQETRALMASALRNMR-LDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHS-KMVKHLLLDPATIPLL 581 (1028)
Q Consensus 504 ~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~-~~~~~lv~~~g~v~~L 581 (1028)
.+++..+..|+..+.... ..|+.... +|..+++|..+.+..+|..|++.|..+|.+. +...+ ++..|
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k------vaDvL 101 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK------VADVL 101 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH------HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH------HHHHH
Confidence 367888999998888874 45665444 6788999999999999999999999999984 44443 55678
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc---CCCHHHHHHHHHHHH
Q 001690 582 LGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA---NTERETKIQFLHLLV 652 (1028)
Q Consensus 582 ~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~---~~~~~~~~~a~~aL~ 652 (1028)
+.+|.+.++ .-...+-.+|..|...+ ..+.+..++..+. +++..+++.++..|.
T Consensus 102 ~QlL~tdd~--~E~~~v~~sL~~ll~~d---------------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 102 VQLLQTDDP--VELDAVKNSLMSLLKQD---------------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHTT---H--HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHhcccH--HHHHHHHHHHHHHHhcC---------------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 889986542 22344445555554421 2245666666665 567778888887664
No 313
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.38 E-value=40 Score=41.48 Aligned_cols=187 Identities=12% Similarity=0.173 Sum_probs=120.1
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcH
Q 001690 499 VACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATI 578 (1028)
Q Consensus 499 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v 578 (1028)
+..+.++-+.++..++..|..+...-+....+...+++...++.|++.++-+--+|+..+..||.- ..+ .++
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e-~il 804 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPE-DIL 804 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cch-hhH
Confidence 444566667788889999999977666677777889999999999999999988999988887754 122 566
Q ss_pred HHHHHHHhccCCC--hhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 001690 579 PLLLGLIQFVRSD--PHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCY 656 (1028)
Q Consensus 579 ~~L~~lL~~~~~~--~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 656 (1028)
|-|.+.-.+.+.. .+.+-..-.++.++...-.+-- .. ..+-.+..++..++.++...+..++..+.++|.
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~------~~--y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELV------FK--YKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHH------HH--HHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 7776633322211 1222333456666665211000 00 011345666777777777778888889988886
Q ss_pred CCH-HHHHHHHhhhchHHHHHhhhcCC-ChhHHHHHHHHHHHhcCCCCCCC
Q 001690 657 KSE-KVRNLIESNNDAITQLFSSLDSD-QPVVRRWAMRLIHCISEGNPNGV 705 (1028)
Q Consensus 657 ~~~-~~~~~i~~~~g~v~~Lv~Ll~~~-~~~v~~~A~~~L~~Ls~~~~~~~ 705 (1028)
-.. .....+. ..+..++.+.+.+ ...+|++|+.++..+- ++.+..
T Consensus 877 ~~a~~vsd~~~---ev~~~Il~l~~~d~s~~vRRaAv~li~~lL-~~tg~d 923 (982)
T KOG4653|consen 877 LLAFQVSDFFH---EVLQLILSLETTDGSVLVRRAAVHLLAELL-NGTGED 923 (982)
T ss_pred HHhhhhhHHHH---HHHHHHHHHHccCCchhhHHHHHHHHHHHH-hccchh
Confidence 442 1122332 3555666666554 4589999999999888 455533
No 314
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=72.79 E-value=9 Score=34.06 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCC
Q 001690 629 VNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLP 708 (1028)
Q Consensus 629 v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~ 708 (1028)
....+..+.++.+.+|.+++..|..|..... ...+.. ...+..+...++++++-+-.+|++.|..|+...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~-~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p------ 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDI-PKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP------ 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh------
Confidence 4456667788889999999999999987765 122222 4677778889999999999999999999994322
Q ss_pred CCCCCcccHHHHHHhccCC
Q 001690 709 PSPGKETAINTVAAIFTCS 727 (1028)
Q Consensus 709 ~~~~~~~~i~~Lv~lL~~~ 727 (1028)
...++.|++...+.
T Consensus 76 -----~~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 76 -----DEVLPILLDEYADP 89 (92)
T ss_pred -----HHHHHHHHHHHhCc
Confidence 23577777655443
No 315
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=72.05 E-value=4.3 Score=43.67 Aligned_cols=101 Identities=17% Similarity=0.277 Sum_probs=63.4
Q ss_pred CCcccCcCccccccCceEccCcccchHHHHHHHHh-cCCCCCCCccccccccCCcCc--cchhhhHHHHHHhhhhhhHHH
Q 001690 258 IESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQ-RGGKNCPTCRQELLSLDLMPN--LSLRSSIEEWKQREIDLRFQN 334 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~-~~~~~CP~~~~~l~~~~l~~n--~~l~~~i~~~~~~~~~~~i~~ 334 (1028)
.++-.|.||-+-.+-.-.+||||..|--|--+.-. -..+.||.|+..-..--+... ..+ .=...|+.++...+|
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~~~DI-~D~~~~k~~~EK~GI-- 135 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTASSPADI-TDRRQWKGREEKVGI-- 135 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecCCCCcc-hhHhhhcccccceee--
Confidence 47789999998777667789999999999866422 134679999876432111111 111 123567777654332
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhc-CChhhhHH
Q 001690 335 AIIKINSDDQSRRKSALEEMKNIM-ELPQYAEK 366 (1028)
Q Consensus 335 ~~~~L~s~~~~~~~~al~~L~~l~-~~~~~r~~ 366 (1028)
...+++.+.+...-|.-.| .+..++.+
T Consensus 136 -----~y~~E~v~~E~~~LL~F~CP~skc~~~C 163 (493)
T COG5236 136 -----FYEGEDVRDEMEDLLSFKCPKSKCHRRC 163 (493)
T ss_pred -----eecchHHHHHHHHHHHhcCCchhhhhhh
Confidence 2345666666666677777 66555544
No 316
>PHA03096 p28-like protein; Provisional
Probab=71.65 E-value=2.4 Score=46.05 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=28.2
Q ss_pred ccCcCccccc-cCc-------eEccCcccchHHHHHHHHhcCC--CCCCCcccc
Q 001690 261 LVCPLCNELM-EDP-------VAIVCGHSFERKAIQEHFQRGG--KNCPTCRQE 304 (1028)
Q Consensus 261 ~~Cpic~~~~-~dP-------v~~~cght~c~~ci~~~~~~~~--~~CP~~~~~ 304 (1028)
-.|.||++.- ..| ..-.|-|.||-.||..|-.... .+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 3477777632 222 1236999999999999986432 455555443
No 317
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=71.46 E-value=39 Score=40.31 Aligned_cols=120 Identities=16% Similarity=0.242 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhcccccccccccccccccccCc
Q 001690 785 ASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMP 864 (1028)
Q Consensus 785 ~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~~~~~~~~~~l~~~~~~~~~~ 864 (1028)
...+.-++..+.+|.. .-|+.+.. .|..+++|..+.+..||..|...|-.++..... +.
T Consensus 36 ~k~K~Laaq~I~kffk-~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~------~v--------- 94 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFK-HFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE------HV--------- 94 (556)
T ss_dssp HHHHHHHHHHHHHHHC-C-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-------H---------
T ss_pred HHHHHHHHHHHHHHHh-hChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH------HH---------
Confidence 5666667777777764 34666444 377899999999999999999999888875433 11
Q ss_pred hhhHhhhhhhcccccCCCCCCCCCCccccccCCcccchhhhhcCcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhh
Q 001690 865 MFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSH 944 (1028)
Q Consensus 865 ~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~ 944 (1028)
...+.-|+++|.++|+....++-.+|..|+.-+..
T Consensus 95 ------------------------------------------~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--- 129 (556)
T PF05918_consen 95 ------------------------------------------SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--- 129 (556)
T ss_dssp ------------------------------------------HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH---
T ss_pred ------------------------------------------hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH---
Confidence 11356899999999999999999999999854321
Q ss_pred HHHHHHhccchHHHHHHHh---cCChhHHHHHHHHHH
Q 001690 945 AIAVIVDSQGVLAILQVLE---KGSLSAKTKALDLFQ 978 (1028)
Q Consensus 945 ~~~~i~~~~~i~~l~~ll~---~~~~~~~~~A~~~l~ 978 (1028)
+.+..+..-+. .+++.+|++++..|.
T Consensus 130 --------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 130 --------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 22333333443 688899999998774
No 318
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=71.35 E-value=4.8 Score=30.11 Aligned_cols=39 Identities=21% Similarity=0.673 Sum_probs=22.3
Q ss_pred CcCccccccCceEc---cCcccchHHHHHHHHhcCCC-CCCCc
Q 001690 263 CPLCNELMEDPVAI---VCGHSFERKAIQEHFQRGGK-NCPTC 301 (1028)
Q Consensus 263 Cpic~~~~~dPv~~---~cght~c~~ci~~~~~~~~~-~CP~~ 301 (1028)
|-+|.++..--+.= .|+-.+-..|+..+|+.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777766655542 48888999999999986543 69987
No 319
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=71.12 E-value=3.6e+02 Score=36.04 Aligned_cols=136 Identities=9% Similarity=0.157 Sum_probs=86.2
Q ss_pred ccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC--CchhHHHHHHHHh-hhchhhhhh
Q 001690 371 GLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG--ETMPEAIEVLSEL-TKRETLGEK 446 (1028)
Q Consensus 371 g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~L-s~~~~~~~~ 446 (1028)
+++..++..|.. ...+|..|+.+|..+..-+.... .....-..+-..+.+. .+|+.|+..+... ...++...+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 566777888888 88899999999999987663211 1122222223333333 7788888877643 223332222
Q ss_pred hhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhh---cCCCHHHHHHHHHHHHHh
Q 001690 447 IGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF---NRGSQETRALMASALRNM 520 (1028)
Q Consensus 447 i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL---~~~~~~~~~~a~~~L~~L 520 (1028)
. -..+..-..+....+++.+...++.+|...++-..+++ .++++| .+....++..+..++.++
T Consensus 893 y------Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~-----~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 893 Y------YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD-----MCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred H------HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH-----HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 2 22344444566778999999999999988776655543 344444 333334888888898888
No 320
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=70.95 E-value=3.8 Score=48.82 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=37.4
Q ss_pred CCCCcccCcCccccccCce----Ecc---CcccchHHHHHHHHhc-----CCCCCCCccccc
Q 001690 256 YPIESLVCPLCNELMEDPV----AIV---CGHSFERKAIQEHFQR-----GGKNCPTCRQEL 305 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv----~~~---cght~c~~ci~~~~~~-----~~~~CP~~~~~l 305 (1028)
.+++.-.|++|.--+.+|+ +.+ |+|.||-.||..|.+. .+..|+.|...+
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3457889999998888865 234 9999999999999873 234677775544
No 321
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=69.94 E-value=8.6 Score=43.04 Aligned_cols=34 Identities=29% Similarity=0.685 Sum_probs=24.8
Q ss_pred cCcccc-----hHHHHHHHHhc------------CCCCCCCccccccccCC
Q 001690 277 VCGHSF-----ERKAIQEHFQR------------GGKNCPTCRQELLSLDL 310 (1028)
Q Consensus 277 ~cght~-----c~~ci~~~~~~------------~~~~CP~~~~~l~~~~l 310 (1028)
+|++-| |-.|+-+||.. |..+||.||.++.-.++
T Consensus 305 ~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 305 PCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred CCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 566666 56899999963 33589999999876553
No 322
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=69.57 E-value=5.3 Score=38.66 Aligned_cols=48 Identities=17% Similarity=0.444 Sum_probs=35.4
Q ss_pred CcccCcCccccccCceEccCccc-----chHHHHHHHHhcC-CCCCCCccccccc
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHS-----FERKAIQEHFQRG-GKNCPTCRQELLS 307 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght-----~c~~ci~~~~~~~-~~~CP~~~~~l~~ 307 (1028)
.+..|=||.+-.. +..-||..+ --++|+++|+..+ ...||.|+++...
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 5678999988643 444566542 2799999999854 4789999988754
No 323
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.47 E-value=49 Score=38.22 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHhchhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHH
Q 001690 383 TRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVS 459 (1028)
Q Consensus 383 ~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~ 459 (1028)
+..++..|+..|.|.+... ..+-.-...-.+..++.-|.++ ++.-.++.+|..+...-.++....-.-...-.+..
T Consensus 271 ~a~~r~~a~r~L~~~as~~-P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~ 349 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGA-PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRT 349 (533)
T ss_pred hhHHHHHHHHHHHHHhccC-cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHH
Confidence 6678889999999999884 2233323345567777777776 56666666666654432222222111234456677
Q ss_pred HhhcCChhhHHHHHHHHhccccCchhHHHH--HH--cCCchhHHHhhcCCCHHHHH
Q 001690 460 LLHNNNPNLSQKAHDVLQNLSHNTHFAVKM--AE--AGYFQPFVACFNRGSQETRA 511 (1028)
Q Consensus 460 lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i--~~--~G~v~~Lv~lL~~~~~~~~~ 511 (1028)
+..+.+++.+..|...+..|+......+++ .+ .+...+|+-.|.+.++.+-.
T Consensus 350 l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ 405 (533)
T KOG2032|consen 350 LFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR 405 (533)
T ss_pred HHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH
Confidence 778899999998888777776544332222 22 14455677777888875543
No 324
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=68.95 E-value=1.1e+02 Score=36.94 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=82.4
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHc--CCchhHHHhhcCCCHHHHHHHHHHHHHhh--cCcchHH
Q 001690 453 CITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEA--GYFQPFVACFNRGSQETRALMASALRNMR--LDESSIK 528 (1028)
Q Consensus 453 ~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~--G~v~~Lv~lL~~~~~~~~~~a~~~L~~La--~~~~~~~ 528 (1028)
.+..++..+. +++..+.-++++|.|+-.++.++..+... -.+.++++.=...+..++...+....|++ ....+-
T Consensus 590 ~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~- 667 (745)
T KOG0301|consen 590 LVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE- 667 (745)
T ss_pred HHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-
Confidence 4555555555 67888899999999999887776666533 23333333333344556655554444542 122111
Q ss_pred HHhhCCcHHHHHHHhc---C--CCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChh
Q 001690 529 TLKDRQFIHNVIQMLS---S--NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPH 593 (1028)
Q Consensus 529 ~i~~~g~i~~Lv~lL~---s--~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~ 593 (1028)
+.|+.+.|...+. . .+-+.....+.||++|+..+....++.+. -.+..++.-++.....+.
T Consensus 668 ---~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~-~~v~sia~~~~~~~~~~~ 733 (745)
T KOG0301|consen 668 ---QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKN-RSVDSIAKKLKEAVSNPS 733 (745)
T ss_pred ---ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHh-cCHHHHHHHHHHhccCch
Confidence 1455566555544 2 23345566788889999998888888876 567777777776544333
No 325
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.63 E-value=7.1 Score=39.46 Aligned_cols=45 Identities=38% Similarity=0.789 Sum_probs=34.3
Q ss_pred ccCcCccccc--cCceEccCcccchHHHHHHHHhc-------CCCCCCCccccc
Q 001690 261 LVCPLCNELM--EDPVAIVCGHSFERKAIQEHFQR-------GGKNCPTCRQEL 305 (1028)
Q Consensus 261 ~~Cpic~~~~--~dPv~~~cght~c~~ci~~~~~~-------~~~~CP~~~~~l 305 (1028)
-.|.+|...+ .|-+.+.|-|-|-..|+.+|-.. .+..||.|.+++
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 3466666544 47777899999999999999752 246899998775
No 326
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.25 E-value=3 Score=43.80 Aligned_cols=32 Identities=31% Similarity=0.709 Sum_probs=24.5
Q ss_pred CcccchHHHHHHHHhc------------CCCCCCCccccccccC
Q 001690 278 CGHSFERKAIQEHFQR------------GGKNCPTCRQELLSLD 309 (1028)
Q Consensus 278 cght~c~~ci~~~~~~------------~~~~CP~~~~~l~~~~ 309 (1028)
|.--.|++|+-+||-. |+.+||.||+.+.-.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 3446789999999852 4568999999886654
No 327
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=68.21 E-value=1.3e+02 Score=34.27 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=57.6
Q ss_pred hHHHhhc-CCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHHH-HHHHHHHhcCCHhHHHHHh
Q 001690 497 PFVACFN-RGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSAC-LKCIKTLIAHSKMVKHLLL 573 (1028)
Q Consensus 497 ~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A-~~aL~nL~~~~~~~~~lv~ 573 (1028)
-++.-|. +.+..+|..++--|+.-..+++-+..+...|.+..+++.+. .++...--.+ +.+++-++.+...-..+..
T Consensus 25 ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~ 104 (361)
T PF07814_consen 25 YLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLD 104 (361)
T ss_pred HHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhc
Confidence 3444444 33455777777777777889999999999999999999995 4444244444 4444555555444333333
Q ss_pred CCCcHHHHHHHHh
Q 001690 574 DPATIPLLLGLIQ 586 (1028)
Q Consensus 574 ~~g~v~~L~~lL~ 586 (1028)
. +....++.++.
T Consensus 105 ~-~~~~ll~~Ll~ 116 (361)
T PF07814_consen 105 R-DSLRLLLKLLK 116 (361)
T ss_pred h-hHHHHHHHHhc
Confidence 3 66666677777
No 328
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.04 E-value=3 Score=45.60 Aligned_cols=59 Identities=27% Similarity=0.273 Sum_probs=49.9
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhh
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRS 318 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~ 318 (1028)
....|.+++-.|.+||-+..|-.|+-..|-.|++ .+.+=|.+++++...+|++-.--++
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lk-k~g~nP~tG~kl~~~dLIkL~F~Kn 97 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLK-KHGTNPITGQKLDGKDLIKLKFHKN 97 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHH-HcCCCCCCCCccccccceeeeeccC
Confidence 3678999999999999999999999999999998 5667899999998888776443333
No 329
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=67.63 E-value=16 Score=38.15 Aligned_cols=81 Identities=15% Similarity=0.299 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHhhCCc-------HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHhHH-HHHhCCCcH
Q 001690 508 ETRALMASALRNMRLDESSIKTLKDRQF-------IHNVIQMLS-SNSPVCKSACLKCIKTLIAHSKMVK-HLLLDPATI 578 (1028)
Q Consensus 508 ~~~~~a~~~L~~La~~~~~~~~i~~~g~-------i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~~~~-~lv~~~g~v 578 (1028)
.-|..|+++|++|+..+.|...|...+- +..|+++|. .+++..||-|+..|.+||..++... .+....+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3578999999999988888888877554 334445554 5678899999999999998875443 344444999
Q ss_pred HHHHHHHhcc
Q 001690 579 PLLLGLIQFV 588 (1028)
Q Consensus 579 ~~L~~lL~~~ 588 (1028)
..|+.++...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 330
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=64.70 E-value=74 Score=34.44 Aligned_cols=186 Identities=18% Similarity=0.186 Sum_probs=104.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCC--cHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCHhHHHH
Q 001690 498 FVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQ--FIHNVIQMLS----SNSPVCKSACLKCIKTLIAHSKMVKHL 571 (1028)
Q Consensus 498 Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g--~i~~Lv~lL~----s~~~~~~~~A~~aL~nL~~~~~~~~~l 571 (1028)
+...+..=+++.+.-+...++-+..++..-..+...+ ....+..++. +..+..+--+++++.|+-.++..+..+
T Consensus 68 ~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~ 147 (268)
T PF08324_consen 68 LLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLL 147 (268)
T ss_dssp HHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHH
Confidence 3344433233345566666666666766655554432 2344444444 245778999999999999998888888
Q ss_pred HhCCC-cHHHHHHHHhccC--CChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhc--CCCHHHHHH
Q 001690 572 LLDPA-TIPLLLGLIQFVR--SDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIA--NTERETKIQ 646 (1028)
Q Consensus 572 v~~~g-~v~~L~~lL~~~~--~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~--~~~~~~~~~ 646 (1028)
....+ .+...+..+.... ....++..++..+.|++..-.... ...=.....+..+++.+. ..+++....
T Consensus 148 ~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~------~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 148 LSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR------SDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp HCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT------S-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred HhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 87633 2333333222211 035667778888889976211000 000001123445555332 368999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhh-cCCChhHHHHH
Q 001690 647 FLHLLVKLCYKSEKVRNLIESNNDAITQLFSSL-DSDQPVVRRWA 690 (1028)
Q Consensus 647 a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll-~~~~~~v~~~A 690 (1028)
++-+|.+|...++........ .|.-..+-... ....+.++..+
T Consensus 222 ~LvAlGtL~~~~~~~~~~~~~-l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQLAKS-LDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHHHCCSHHHHHHCCC-CTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHH-cChHHHHHHHHhcccchHHHHHh
Confidence 999999999888766665543 33333333332 33344555544
No 331
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.31 E-value=25 Score=34.13 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=55.3
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhc-C-ChhhhHHHHhhccHHHHHHHHhc--CHHHHHHHHHHHHHHhc
Q 001690 331 RFQNAIIKINSDDQSRRKSALEEMKNIM-E-LPQYAEKAAKAGLIPKLVEFLKD--TRLSTEAILKCLYFLAK 399 (1028)
Q Consensus 331 ~i~~~~~~L~s~~~~~~~~al~~L~~l~-~-~~~~r~~i~~~g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~ 399 (1028)
.+..+..++.++++.++..|+.-|..+. . ...-+..+...+++..|+++++. +..++..++..+...+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4566778899999999999998887777 3 34455667888999999999975 88899999988877764
No 332
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=64.15 E-value=3.8 Score=31.32 Aligned_cols=39 Identities=26% Similarity=0.709 Sum_probs=22.2
Q ss_pred CcCcccccc--CceEccCcc-----cchHHHHHHHHhc-CCCCCCCc
Q 001690 263 CPLCNELME--DPVAIVCGH-----SFERKAIQEHFQR-GGKNCPTC 301 (1028)
Q Consensus 263 Cpic~~~~~--dPv~~~cgh-----t~c~~ci~~~~~~-~~~~CP~~ 301 (1028)
|-||++--. +|.+.||+- -.-+.|+++|+.. +..+|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 446665432 267778753 2368899999974 55678876
No 333
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=63.35 E-value=25 Score=33.64 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=53.7
Q ss_pred hhHHHHHhhhcCCChHHHHHHHHHHHHhc-C-ChhhhHHHHhhccHHHHHHHHhc--CHH-HHHHHHHHHHHHhc
Q 001690 330 LRFQNAIIKINSDDQSRRKSALEEMKNIM-E-LPQYAEKAAKAGLIPKLVEFLKD--TRL-STEAILKCLYFLAK 399 (1028)
Q Consensus 330 ~~i~~~~~~L~s~~~~~~~~al~~L~~l~-~-~~~~r~~i~~~g~ip~Lv~lL~s--~~~-~~~~A~~~L~~Ls~ 399 (1028)
..+..+..++.++++.++..|+.-|..+. . ...-+..+...+++..|+++++. +.. ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 34566788899999999999998888777 3 34455677888899999999987 333 88888887766654
No 334
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=63.00 E-value=2.1e+02 Score=33.17 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=86.2
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHH-HHHHHHcCCCCC
Q 001690 535 FIHNVIQMLSS-NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAE-ILALMVGGCQHP 612 (1028)
Q Consensus 535 ~i~~Lv~lL~s-~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~-~L~nL~~~~~~~ 612 (1028)
.+-.+++.|+. .+...++.|+++|..++.+...+-.=-.+ -++..+++.-.+.. ..+...|.. ++.-++...+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa~ds~--~~v~~~Aeed~~~~las~~P-- 404 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAAKDSQ--DEVMRVAEEDCLTTLASHLP-- 404 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHHhCCc--hhHHHHHHHHHHHHHHhhCc--
Confidence 45567788876 77889999999999999886433211111 23444444433322 233344443 3444444322
Q ss_pred cccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--HHHHHHHHhhhchHHHHHhhhcCCChhHHHHH
Q 001690 613 QFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS--EKVRNLIESNNDAITQLFSSLDSDQPVVRRWA 690 (1028)
Q Consensus 613 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A 690 (1028)
. ..|..+..++...+...-..++..+..++..- +..-..+ .+..|.+++--.+.+..||..|
T Consensus 405 ~-------------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll---~diaP~~iqay~S~SS~VRKta 468 (516)
T KOG2956|consen 405 L-------------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL---PDIAPCVIQAYDSTSSTVRKTA 468 (516)
T ss_pred h-------------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh---hhhhhHHHHHhcCchHHhhhhH
Confidence 1 14555556666555555555666666665433 3333333 3688889998899999999999
Q ss_pred HHHHHHhc
Q 001690 691 MRLIHCIS 698 (1028)
Q Consensus 691 ~~~L~~Ls 698 (1028)
+.+|-.+-
T Consensus 469 VfCLVamv 476 (516)
T KOG2956|consen 469 VFCLVAMV 476 (516)
T ss_pred HHhHHHHH
Confidence 98888776
No 335
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.49 E-value=1.5e+02 Score=36.96 Aligned_cols=172 Identities=14% Similarity=0.173 Sum_probs=106.6
Q ss_pred CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHH-hhc
Q 001690 425 ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVA-CFN 503 (1028)
Q Consensus 425 e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~-lL~ 503 (1028)
..+-.++..|..+.+.......+.. .+.+.....+|++.|+-+-.+|...+..||.- ....++|-|.. ..+
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLS 813 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHh
Confidence 5667777777777765555555555 68888999999988888888888766666542 22345666666 332
Q ss_pred C---CCHHHHHHHHHHHHHhh--cCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH-hHHHHHhCCCc
Q 001690 504 R---GSQETRALMASALRNMR--LDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSK-MVKHLLLDPAT 577 (1028)
Q Consensus 504 ~---~~~~~~~~a~~~L~~La--~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~-~~~~lv~~~g~ 577 (1028)
. ..++.+...-.++.++. .++-...... -.+...+..+++++..-|..+.+.+++||.-.. .....+. .+
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev 889 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EV 889 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HH
Confidence 1 11344444456666653 2221111111 234555666777767778999999999986532 1122333 25
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHcCC
Q 001690 578 IPLLLGLIQFVRSDPHLKHEAAEILALMVGGC 609 (1028)
Q Consensus 578 v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~ 609 (1028)
+..++.+...+.+ .-+++.|+.++..+-.+.
T Consensus 890 ~~~Il~l~~~d~s-~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 890 LQLILSLETTDGS-VLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHHHHHHccCCc-hhhHHHHHHHHHHHHhcc
Confidence 6677777776543 567888888888887754
No 336
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.36 E-value=47 Score=39.80 Aligned_cols=130 Identities=10% Similarity=0.114 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHh-hcCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHH
Q 001690 505 GSQETRALMASALRNM-RLDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLL 582 (1028)
Q Consensus 505 ~~~~~~~~a~~~L~~L-a~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~ 582 (1028)
.+++++..|.-.|..+ +...+... .-.|.|+..|. +++|.+|.+|+-.|+-+..+-.+ .+. ..-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~---~~d--e~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT---TAD--EHTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh---hhH--HHHHHHH
Confidence 6788888888888887 33322222 24789999887 89999999999999887544211 111 1233444
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 001690 583 GLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS 658 (1028)
Q Consensus 583 ~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 658 (1028)
+-|... +..+++.|..++.+|.-..+ +.-.|-.+.+..+|..++..+..-|=..+..++..+
T Consensus 978 rrL~De--~~~V~rtclmti~fLilagq------------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLGDE--DADVRRTCLMTIHFLILAGQ------------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhcch--hhHHHHHHHHHHHHHHHccc------------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 555433 36788999999999887432 334577888899999999888888777777777655
No 337
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=62.15 E-value=2.4e+02 Score=34.36 Aligned_cols=169 Identities=11% Similarity=0.108 Sum_probs=95.2
Q ss_pred cchHHHHHHHhhcCChhhHH--HHHHHHhccccCchhHHHHHHcCCchhHHHhhcC----CCHHHHHHHHHHHHHhh---
Q 001690 451 KDCITIMVSLLHNNNPNLSQ--KAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNR----GSQETRALMASALRNMR--- 521 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~--~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~----~~~~~~~~a~~~L~~La--- 521 (1028)
..++..+...+.++.....+ .+...+......+. . ..+..+..++.+ ..+.++..|.-+++.+.
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-~------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-E------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-H------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 67888888888876543322 22222222222221 1 134445555543 24456666666666662
Q ss_pred -cCcchH-HHHhhCCcHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHh-ccCCChhH
Q 001690 522 -LDESSI-KTLKDRQFIHNVIQMLS----SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQ-FVRSDPHL 594 (1028)
Q Consensus 522 -~~~~~~-~~i~~~g~i~~Lv~lL~----s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~-~~~~~~~l 594 (1028)
.+.... ..+. ...++.|...|. ..+...+..++++|+|+... ..++.|..++. .......+
T Consensus 429 c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~i 496 (574)
T smart00638 429 CVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFI 496 (574)
T ss_pred hcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHH
Confidence 222211 1222 236677777665 34566677889999997554 34555555555 22223577
Q ss_pred HHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 001690 595 KHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIAN--TERETKIQFLHLLVK 653 (1028)
Q Consensus 595 ~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~~~~~a~~aL~~ 653 (1028)
+..|.++|..++.... + .+-+.|+.++.+ .++++|..|..+|..
T Consensus 497 R~~Av~Alr~~a~~~p--~-------------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 497 RLAAILALRNLAKRDP--R-------------KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHHHHHhCc--h-------------HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 8899999998876332 1 245667777764 456777766666644
No 338
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=61.54 E-value=3.6 Score=30.91 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=21.3
Q ss_pred EccC-cccchHHHHHHHHhcCCCCCCCccccccc
Q 001690 275 AIVC-GHSFERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 275 ~~~c-ght~c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
.+.| .|-.|..|+...+. ....||.|+.+++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence 4555 48889999998876 56779999998864
No 339
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=61.33 E-value=97 Score=38.26 Aligned_cols=166 Identities=20% Similarity=0.229 Sum_probs=93.3
Q ss_pred hchhHHHHHhhccC-CchhHHHHHHHHhhhch-hhhhhhhcccchHHHHHHHhhc----CChhhHHHHHHHHhccc----
Q 001690 411 AGAVRRIVKQICKG-ETMPEAIEVLSELTKRE-TLGEKIGNTKDCITIMVSLLHN----NNPNLSQKAHDVLQNLS---- 480 (1028)
Q Consensus 411 ~g~i~~lv~~L~~~-e~~~~A~~~L~~Ls~~~-~~~~~i~~~~g~I~~Lv~lL~~----~~~~~~~~a~~~L~nL~---- 480 (1028)
..++..+.+.+.++ -....|+..|..|.... ... ...+..+..++++ .++.+...|+-++..|.
T Consensus 394 ~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 34577777778777 44555777777775432 211 3455566666653 34556666666655553
Q ss_pred cCc------hhHHHHHHcCCchhHHHhhc----CCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCC---C
Q 001690 481 HNT------HFAVKMAEAGYFQPFVACFN----RGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSN---S 547 (1028)
Q Consensus 481 ~~~------~n~~~i~~~G~v~~Lv~lL~----~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~---~ 547 (1028)
... ......+..-+++.|...|. .++.+-+..++.+|+|+.. ...++.|...+... +
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccc
Confidence 331 11122223346777777664 4556677778888888743 23677888777755 5
Q ss_pred HHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHH
Q 001690 548 PVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAE 600 (1028)
Q Consensus 548 ~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~ 600 (1028)
..+|..|+++|..+...... -+.+.|+.+..+.+.+..++-.|..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~ 582 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYL 582 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHH
Confidence 77899999999988555332 2445677777776665665444433
No 340
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=61.31 E-value=6.8 Score=36.98 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=34.6
Q ss_pred cccCcCccccccC--ceE-ccCcc------cchHHHHHHHHhcCCCCCCCccccccccCCc
Q 001690 260 SLVCPLCNELMED--PVA-IVCGH------SFERKAIQEHFQRGGKNCPTCRQELLSLDLM 311 (1028)
Q Consensus 260 ~~~Cpic~~~~~d--Pv~-~~cgh------t~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~ 311 (1028)
...|.||++...+ -|+ ++||. -||..|+++|-+ .....|-=|..--..++.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I~y~F~fP 85 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNIKYWFNFP 85 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccceEEEEeCC
Confidence 6889999987665 554 67874 589999999953 445566655433333333
No 341
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=61.28 E-value=2.2e+02 Score=30.11 Aligned_cols=137 Identities=19% Similarity=0.254 Sum_probs=82.9
Q ss_pred HHHHHH-HhhcCChhhHHHHHHHHhccccCc-hhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh-cCcchHHHH
Q 001690 454 ITIMVS-LLHNNNPNLSQKAHDVLQNLSHNT-HFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR-LDESSIKTL 530 (1028)
Q Consensus 454 I~~Lv~-lL~~~~~~~~~~a~~~L~nL~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i 530 (1028)
+|.|.. +-+..+++.+...+.+|..++.++ .+...+ +..|..+...+..+.+.-+...+..+- .++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 345555 344678899999999999999888 544444 344666667776666555566666662 222211
Q ss_pred hhCCcHHHHHHH--hc------CC--CHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHH
Q 001690 531 KDRQFIHNVIQM--LS------SN--SPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAE 600 (1028)
Q Consensus 531 ~~~g~i~~Lv~l--L~------s~--~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~ 600 (1028)
+.+..++.. ++ ++ ..+..-..+.++..+|...+++.. ..++.+..++. +..+...+..+..
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~-~~~~~~~~alale 144 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLN-QSCDEVAQALALE 144 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHh-ccccHHHHHHHHH
Confidence 334444444 11 11 123334445678888877655211 36788888884 2233567788888
Q ss_pred HHHHHHc
Q 001690 601 ILALMVG 607 (1028)
Q Consensus 601 ~L~nL~~ 607 (1028)
.|..+|.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 8999985
No 342
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=61.22 E-value=1.2e+02 Score=38.25 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHHHHHHHHHhhcccccch--hhcHHHHHHHHHHHHHHh---hcccc
Q 001690 82 GAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNL--EIALNLKAMTDQIVDSLR---SMEFQ 156 (1028)
Q Consensus 82 ~~~l~~ak~Ll~~c~~~Sklyll~~~~~~~~~~~~~~~~l~~~L~~~p~~~l--~~~~~~~~~~~~~~~~~~---~~~~~ 156 (1028)
...|+..|.+++.=- -|--+.+|+.-+.+ |++...+ ++|..||.++- .||.++++||..+++++. ||--.
T Consensus 1014 K~QMDaIKqmIekKv---~L~~L~qCqdALeK-qnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~T 1088 (1439)
T PF12252_consen 1014 KAQMDAIKQMIEKKV---VLQALTQCQDALEK-QNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVT 1088 (1439)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHh-hhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345677777776511 11145555554444 4444443 57888886652 389999999999998754 33322
Q ss_pred cchHH-HHHHHHHHHHHh-------hhc----CCchhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001690 157 SVAAA-EAIASEIERSAL-------QNN----KNRENALELLRKIAEAVGASVNASLVQTELELLKQEKEELEAEKKQAE 224 (1028)
Q Consensus 157 ~~~~~-~~~~~~i~~~l~-------~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~e 224 (1028)
+-..| ++....-+.+|. +.. .+.+...+.+.. -..|++|+..|+.|+..+..++++.+
T Consensus 1089 PVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~----------lnnlqqElklLRnEK~Rmh~~~dkVD 1158 (1439)
T PF12252_consen 1089 PVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIAN----------LNNLQQELKLLRNEKIRMHSGTDKVD 1158 (1439)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH----------HHHHHHHHHHHHhHHHhhccCCCccc
Confidence 22222 333322222221 111 112222222211 24578888888888877776665554
Q ss_pred HHHHHHHHHHhhhh
Q 001690 225 ALQLTQLMQLLYST 238 (1028)
Q Consensus 225 ~~~~~~l~~~l~~~ 238 (1028)
-.-+++|-..+..+
T Consensus 1159 FSDIEkLE~qLq~~ 1172 (1439)
T PF12252_consen 1159 FSDIEKLEKQLQVI 1172 (1439)
T ss_pred HHHHHHHHHHHHHh
Confidence 44556665555543
No 343
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=61.11 E-value=2.6e+02 Score=30.77 Aligned_cols=201 Identities=15% Similarity=0.249 Sum_probs=134.6
Q ss_pred HHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhch-----hhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhcc
Q 001690 407 AIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRE-----TLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNL 479 (1028)
Q Consensus 407 ~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~~-----~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL 479 (1028)
.+..+|.+..++..+... +.+..++....++-+.+ -..+.+...+..+..||.--.. .++....+-..|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 344578888999999887 88888888877774321 2233333334555555554111 345555555566665
Q ss_pred ccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHh-hcCcchHHHHhhCCc----HHHHHHHhcCCCHHHHHHH
Q 001690 480 SHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNM-RLDESSIKTLKDRQF----IHNVIQMLSSNSPVCKSAC 554 (1028)
Q Consensus 480 ~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~~~~~~i~~~g~----i~~Lv~lL~s~~~~~~~~A 554 (1028)
..++.-...+.+..-+.........++=++...|..+...+ ..+......+..... ...--.++++++.-.+..+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 56655555556667777788888777778888888888877 344444444443322 2335668899999999999
Q ss_pred HHHHHHHhcCCHhHHHHH---hCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCC
Q 001690 555 LKCIKTLIAHSKMVKHLL---LDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQ 610 (1028)
Q Consensus 555 ~~aL~nL~~~~~~~~~lv---~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~ 610 (1028)
.+.|+.+-.+..|...+. ..+..+..++.+|+..+ ..+|-.|-.+.+-....+.
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdks--kniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS--KNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc--ccchHHHHHHHHHHhcCCC
Confidence 999999977765554443 43467889999998765 4667888888888877554
No 344
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=60.77 E-value=3.3 Score=39.95 Aligned_cols=21 Identities=33% Similarity=0.920 Sum_probs=17.8
Q ss_pred CcccCcCccccccCceEccCc
Q 001690 259 ESLVCPLCNELMEDPVAIVCG 279 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cg 279 (1028)
++.+||||++.-.+.|.+-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467999999999999987654
No 345
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.53 E-value=33 Score=33.39 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=55.0
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhc--CChhhhHHHHhhccHHHHHHHHhc--CHHHHHHHHHHHHHHhc
Q 001690 331 RFQNAIIKINSDDQSRRKSALEEMKNIM--ELPQYAEKAAKAGLIPKLVEFLKD--TRLSTEAILKCLYFLAK 399 (1028)
Q Consensus 331 ~i~~~~~~L~s~~~~~~~~al~~L~~l~--~~~~~r~~i~~~g~ip~Lv~lL~s--~~~~~~~A~~~L~~Ls~ 399 (1028)
.+..+..++.++++..+..|+.-|..+. ....-+..++...++..|++++.. +..++...+..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3556778889999999999998888877 233445667888999999999987 88899988888877754
No 346
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.45 E-value=4.6e+02 Score=33.43 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhh------c--CChhhHHHHHHHHhccccC---chhHHHHHHcC
Q 001690 425 ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLH------N--NNPNLSQKAHDVLQNLSHN---THFAVKMAEAG 493 (1028)
Q Consensus 425 e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~------~--~~~~~~~~a~~~L~nL~~~---~~n~~~i~~~G 493 (1028)
.-..+|...+..+++ ...+..+ +|.++.++..+. . .+++.+..|+.++.+|+.. +.--....+.=
T Consensus 387 sp~~Aa~~~l~~~~~-KR~ke~l---~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f 462 (1010)
T KOG1991|consen 387 SPDTAALDFLTTLVS-KRGKETL---PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF 462 (1010)
T ss_pred CCcHHHHHHHHHHHH-hcchhhh---hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH
Confidence 334445555555543 2222222 688889999887 2 3456677788888887632 22222233333
Q ss_pred CchhHHHhhcCCCHHHHHHHHHHHHHhhcCc-chHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHhHHHH
Q 001690 494 YFQPFVACFNRGSQETRALMASALRNMRLDE-SSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHSKMVKHL 571 (1028)
Q Consensus 494 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~~~~~l 571 (1028)
.++.++..++++.--+|..|++++...+.-+ ....... .+.......|. +.+..++-.|+-||..+-.+.+....-
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence 4555666677777789999999999997322 1111111 13455566666 777889999999999887665433222
Q ss_pred HhC--CCcHHHHHHHHhc
Q 001690 572 LLD--PATIPLLLGLIQF 587 (1028)
Q Consensus 572 v~~--~g~v~~L~~lL~~ 587 (1028)
++. .+.++.|+.+.+.
T Consensus 541 ~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HhhhhhHHHHHHHHHHHh
Confidence 221 1355555555554
No 347
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.35 E-value=30 Score=40.56 Aligned_cols=105 Identities=9% Similarity=0.115 Sum_probs=80.9
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhh---cCcchH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMR---LDESSI 527 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La---~~~~~~ 527 (1028)
.|.+..+++-+.+.+..++...+..|.-++..-.......-.|.+..|...+-+..+.++.+|+.+|..+- .+++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 47888888888899999999999999988876666666677788888998888888999999999999984 344433
Q ss_pred HHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCC
Q 001690 528 KTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHS 565 (1028)
Q Consensus 528 ~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~ 565 (1028)
. ...|+.+++ .|+.++|..| |.|+..++
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 2 236677776 5777888765 56665554
No 348
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=59.25 E-value=7.7 Score=30.40 Aligned_cols=31 Identities=26% Similarity=0.773 Sum_probs=25.3
Q ss_pred CcccCcCccccc--cCceEc--cCcccchHHHHHH
Q 001690 259 ESLVCPLCNELM--EDPVAI--VCGHSFERKAIQE 289 (1028)
Q Consensus 259 ~~~~Cpic~~~~--~dPv~~--~cght~c~~ci~~ 289 (1028)
..-.|++|.+.+ .|.+++ .||-.|-|.|.++
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457899999999 677764 6999999999643
No 349
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.80 E-value=63 Score=38.08 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=70.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCC
Q 001690 628 NVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPL 707 (1028)
Q Consensus 628 ~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~ 707 (1028)
.+..++.-+.+.+..++..++.+|.-+...-..+-..+.. +.+..|..-+-...+.||..|+.+|+++-+...+++
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N--~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-- 167 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLAN--GLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-- 167 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--
Confidence 3344444455677789999999988887665555555543 666677666666778899999999999984322211
Q ss_pred CCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhc
Q 001690 708 PPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQ 742 (1028)
Q Consensus 708 ~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~n 742 (1028)
......|+.++.+.++.+++..|+--|.+
T Consensus 168 ------n~~~n~l~~~vqnDPS~EVRr~allni~v 196 (885)
T COG5218 168 ------NRIVNLLKDIVQNDPSDEVRRLALLNISV 196 (885)
T ss_pred ------HHHHHHHHHHHhcCcHHHHHHHHHHHeee
Confidence 23355677888888877888776654443
No 350
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=58.76 E-value=2.7e+02 Score=30.16 Aligned_cols=153 Identities=11% Similarity=0.061 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcCcch--------HHHHhhCCcHHHHHHHhcCCC----HHHHHHHHHHHHHHhcCCHhHHHHHhCCC
Q 001690 509 TRALMASALRNMRLDESS--------IKTLKDRQFIHNVIQMLSSNS----PVCKSACLKCIKTLIAHSKMVKHLLLDPA 576 (1028)
Q Consensus 509 ~~~~a~~~L~~La~~~~~--------~~~i~~~g~i~~Lv~lL~s~~----~~~~~~A~~aL~nL~~~~~~~~~lv~~~g 576 (1028)
....+...|..|...++. +-.+.=.+.+|.++.-+.+++ ......++..|..+|.... . +
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~-~ 149 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------L-P 149 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------C-c
Confidence 445666777777543332 222222234566666666666 1344566688888774321 1 3
Q ss_pred cHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 001690 577 TIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCY 656 (1028)
Q Consensus 577 ~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 656 (1028)
.+..++.....+.. ..-.+-...+...++..-. ++ .+...+.-|+.+|.++.+.++..++.+|..+-.
T Consensus 150 ~La~il~~ya~~~f-r~~~dfl~~v~~~l~~~f~-P~----------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~ 217 (262)
T PF14225_consen 150 NLARILSSYAKGRF-RDKDDFLSQVVSYLREAFF-PD----------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLP 217 (262)
T ss_pred cHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhC-ch----------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 34444444444433 2223334444444444210 01 123467789999999999999999999998877
Q ss_pred CCHHHHHHHHhhhchHHHHHhhhcCCCh
Q 001690 657 KSEKVRNLIESNNDAITQLFSSLDSDQP 684 (1028)
Q Consensus 657 ~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~ 684 (1028)
..+..+. .. .+.+.+|.++++.+.-
T Consensus 218 ~~d~~~~--~~-~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 218 HVDMRSP--HG-ADLISPLLRLLQTDLW 242 (262)
T ss_pred cccCCCC--cc-hHHHHHHHHHhCCccH
Confidence 6533222 23 5789999999987753
No 351
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=57.48 E-value=2e+02 Score=36.37 Aligned_cols=181 Identities=9% Similarity=0.096 Sum_probs=113.7
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCC-HhHHHHHhC
Q 001690 497 PFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHS-KMVKHLLLD 574 (1028)
Q Consensus 497 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~-~~~~~lv~~ 574 (1028)
.+-.-+.+.+..-+.+++..+......+.........|.+-.+++... +.+..+...|+..|..|+..- ........
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~- 335 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK- 335 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH-
Confidence 333444566666677777666655333321111122344555555443 566778888999998887653 33333343
Q ss_pred CCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 001690 575 PATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKL 654 (1028)
Q Consensus 575 ~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L 654 (1028)
++.|.++.-+.... ..+++.+..++-..+.... -....+.....+.+.+|.++..+...+...
T Consensus 336 -~v~p~lld~lkekk--~~l~d~l~~~~d~~~ns~~--------------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 336 -NVFPSLLDRLKEKK--SELRDALLKALDAILNSTP--------------LSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred -hhcchHHHHhhhcc--HHHHHHHHHHHHHHHhccc--------------HHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 57888888876543 4566666666666655321 123567788889999999999888777655
Q ss_pred hcCCH---HHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 655 CYKSE---KVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 655 ~~~~~---~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
..... ..+..+ .+.++.++......+.+||.+|..++..+-
T Consensus 399 ~~~~~~~~~~~~t~---~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 399 LRKLGPKTVEKETV---KTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred HhhcCCcCcchhhH---HHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 44332 222222 357777888888888899999988877665
No 352
>PHA02862 5L protein; Provisional
Probab=57.24 E-value=8.9 Score=36.35 Aligned_cols=56 Identities=21% Similarity=0.538 Sum_probs=37.2
Q ss_pred cCcCccccccCceEccCcc-----cchHHHHHHHHhc-CCCCCCCccccccccCCcCccchhhhHHHHH
Q 001690 262 VCPLCNELMEDPVAIVCGH-----SFERKAIQEHFQR-GGKNCPTCRQELLSLDLMPNLSLRSSIEEWK 324 (1028)
Q Consensus 262 ~Cpic~~~~~dPv~~~cgh-----t~c~~ci~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 324 (1028)
.|=||++--.+. .-||+. ---+.|+++|+.. ++..||.|+.+...+... +-..+|+
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~y------Kpf~kW~ 65 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTY------VSFKKWN 65 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEcc------ccHHHhh
Confidence 578888765444 356653 2368999999974 447899999987543221 2356776
No 353
>PF14353 CpXC: CpXC protein
Probab=56.70 E-value=7.2 Score=37.09 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=31.2
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcCC---CCCCCccccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGG---KNCPTCRQELLS 307 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~---~~CP~~~~~l~~ 307 (1028)
+.+||-|...+.-.+-..-.-+....-.++.++ |. .+||.|+..+.-
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~-g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILD-GSLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc-CCcCEEECCCCCCceec
Confidence 368999999887665433333344555666664 43 689999987743
No 354
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=56.10 E-value=60 Score=32.37 Aligned_cols=107 Identities=15% Similarity=0.267 Sum_probs=65.0
Q ss_pred chHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcC--CchhHHHhhcC-CCHHHHHHHHHHHHHh----hcCc
Q 001690 452 DCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAG--YFQPFVACFNR-GSQETRALMASALRNM----RLDE 524 (1028)
Q Consensus 452 g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G--~v~~Lv~lL~~-~~~~~~~~a~~~L~~L----a~~~ 524 (1028)
.-+..+..+|++.++..+..++..+.-.+...+ ...+.+.| .+..|+..|+. +++.+...+..+|..| ...+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 455567778888888888888888877765432 23333332 46778888854 4556777788888887 3445
Q ss_pred chHHHHhhC---CcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001690 525 SSIKTLKDR---QFIHNVIQMLSSNSPVCKSACLKCIKTL 561 (1028)
Q Consensus 525 ~~~~~i~~~---g~i~~Lv~lL~s~~~~~~~~A~~aL~nL 561 (1028)
+-...+.-. +.++.++.++.. ....+.++.+|..+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 544444332 334445555543 34455555555554
No 355
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.03 E-value=2.8e+02 Score=29.48 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=21.8
Q ss_pred CCCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 256 YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
.|...-.|.=|+-.+ |.++ ..++.. ...-.+||.|+.-+.
T Consensus 193 vpl~g~~C~GC~m~l------~~~~---~~~V~~--~d~iv~CP~CgRILy 232 (239)
T COG1579 193 VPLEGRVCGGCHMKL------PSQT---LSKVRK--KDEIVFCPYCGRILY 232 (239)
T ss_pred EeecCCcccCCeeee------cHHH---HHHHhc--CCCCccCCccchHHH
Confidence 344667788776532 2232 223322 112368999988653
No 356
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.85 E-value=47 Score=32.10 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=52.8
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhc--CChhhhHHHHhhccHHHHHHHHh-----c--CHHHHHHHHHHHHHHhc
Q 001690 331 RFQNAIIKINSDDQSRRKSALEEMKNIM--ELPQYAEKAAKAGLIPKLVEFLK-----D--TRLSTEAILKCLYFLAK 399 (1028)
Q Consensus 331 ~i~~~~~~L~s~~~~~~~~al~~L~~l~--~~~~~r~~i~~~g~ip~Lv~lL~-----s--~~~~~~~A~~~L~~Ls~ 399 (1028)
.+..+..++.++++.++..|+..|..+. .....+..++..+++..++++++ + +..++...+..+...+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3556778899999999999998887777 23445567888889999999985 2 67888888887766653
No 357
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=55.43 E-value=20 Score=36.22 Aligned_cols=34 Identities=29% Similarity=0.691 Sum_probs=22.3
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCcccccccc
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSL 308 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~ 308 (1028)
..|.||.|..-++ |. ..+ . ....||.|+.++...
T Consensus 116 ~~Y~Cp~C~~ryt----------f~-eA~----~-~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 116 MFFFCPNCHIRFT----------FD-EAM----E-YGFRCPQCGEMLEEY 149 (178)
T ss_pred CEEECCCCCcEEe----------HH-HHh----h-cCCcCCCCCCCCeec
Confidence 6899998864322 21 122 2 468899999998663
No 358
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=54.90 E-value=1.4 Score=36.35 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=23.2
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
+..||.|...|. ..-|+.+|..|-..+. ....||.|++++..
T Consensus 1 e~~CP~C~~~L~----~~~~~~~C~~C~~~~~--~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELE----WQGGHYHCEACQKDYK--KEAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEE----EETTEEEETTT--EEE--EEEE-TTT-SB-EE
T ss_pred CCcCCCCCCccE----EeCCEEECccccccce--ecccCCCcccHHHH
Confidence 468999988643 2348889999965432 24579999998854
No 359
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=54.64 E-value=3.5e+02 Score=30.32 Aligned_cols=158 Identities=11% Similarity=0.153 Sum_probs=105.5
Q ss_pred chhHHHhhcCCCHHHHHHHHHHHHHhhc-Cc-chHHHHhh-CCc-HHHHHHHhcCC----C---------HHHHHHHHHH
Q 001690 495 FQPFVACFNRGSQETRALMASALRNMRL-DE-SSIKTLKD-RQF-IHNVIQMLSSN----S---------PVCKSACLKC 557 (1028)
Q Consensus 495 v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~-~~~~~i~~-~g~-i~~Lv~lL~s~----~---------~~~~~~A~~a 557 (1028)
+..+.+.|......+...+...|..+.. +. .....+.+ -.. .+.+.+++.-. . +.+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777788888888888888899999865 33 34444443 332 56677776411 1 2788888888
Q ss_pred HHHHhcC--CHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHH-HHcCCCCCcccccccchhhcccccHHHHHH
Q 001690 558 IKTLIAH--SKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILAL-MVGGCQHPQFELHHGLQELQSEHNVNVFLQ 634 (1028)
Q Consensus 558 L~nL~~~--~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~n-L~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~ 634 (1028)
+..+... +..+..++...+.+..+.+-|..++ ..+......+|.. +.....-.+. -...+..+.++..|+.
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~--~~~v~~iL~~l~~~Vl~~~~v~r~----~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDP--PETVILILETLKDKVLKDSSVSRS----TKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCC--HHHHHHHHHHHHHHhccCCCCChh----hhhhhcCHHHHHHHHH
Confidence 8777553 4678888877678888888887632 4555666666664 3332211111 2346777788999999
Q ss_pred HhcCCCH----HHHHHHHHHHHHhhcCC
Q 001690 635 LIANTER----ETKIQFLHLLVKLCYKS 658 (1028)
Q Consensus 635 lL~~~~~----~~~~~a~~aL~~L~~~~ 658 (1028)
+....++ .+...+-..|..+|.++
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 8887777 67777777788887766
No 360
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=53.98 E-value=3.6e+02 Score=30.24 Aligned_cols=202 Identities=14% Similarity=0.189 Sum_probs=130.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc-CC-HhHHHHHhCCC-cHHHHHHHHhccCC---C--------hhHHHHHHHH
Q 001690 536 IHNVIQMLSSNSPVCKSACLKCIKTLIA-HS-KMVKHLLLDPA-TIPLLLGLIQFVRS---D--------PHLKHEAAEI 601 (1028)
Q Consensus 536 i~~Lv~lL~s~~~~~~~~A~~aL~nL~~-~~-~~~~~lv~~~g-~v~~L~~lL~~~~~---~--------~~l~~~a~~~ 601 (1028)
++.+.+.|.+..+.....+++.|.++.. ++ .....+..... -.+.+-+++..... . ..++.....-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777888888888888899999999988 55 56666666544 35566677643221 0 1566666665
Q ss_pred HHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHH-hhcCC---HHHHHHHHhhhchHHHHHh
Q 001690 602 LALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVK-LCYKS---EKVRNLIESNNDAITQLFS 677 (1028)
Q Consensus 602 L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~-L~~~~---~~~~~~i~~~~g~v~~Lv~ 677 (1028)
+..+..... ... ....+...+.+..+..-|..+++++....+.+|.. +..++ ...+..+-. ...+..|..
T Consensus 138 ~Lsfl~~~~-~~~----~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~ 211 (330)
T PF11707_consen 138 WLSFLSSGD-PEL----KRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLAS 211 (330)
T ss_pred HHHHHccCC-HHH----HHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHH
Confidence 555544331 111 24567777788999999999999999999998874 55444 445555555 689999999
Q ss_pred hhcCCCh----hHHHHHHHHHHHhcCCCCCCCCCCC---------------------CCCCcccHHHHHHhccCCCCHHH
Q 001690 678 SLDSDQP----VVRRWAMRLIHCISEGNPNGVPLPP---------------------SPGKETAINTVAAIFTCSPDVEE 732 (1028)
Q Consensus 678 Ll~~~~~----~v~~~A~~~L~~Ls~~~~~~~i~~~---------------------~~~~~~~i~~Lv~lL~~~~~~~~ 732 (1028)
+-..+++ .++..+-..|..++- .+..-+... .++..+.+-.+++.|.-.++..+
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT-~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q 290 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCT-DPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQ 290 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhc-CCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHH
Confidence 8888777 888888888888772 222111111 11223445555666655555555
Q ss_pred HHHHHHHHhcCC
Q 001690 733 RSLAAGIISQLP 744 (1028)
Q Consensus 733 ~~~a~~~L~nL~ 744 (1028)
+.-++.++.+.+
T Consensus 291 ~~Lvl~Il~~~P 302 (330)
T PF11707_consen 291 QELVLKILKACP 302 (330)
T ss_pred HHHHHHHHHHCh
Confidence 566666666543
No 361
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=52.59 E-value=16 Score=28.70 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=24.2
Q ss_pred eEccCcccchHHHHHHHHhcCCCCCCCcccccccc
Q 001690 274 VAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSL 308 (1028)
Q Consensus 274 v~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~ 308 (1028)
.+-+--.|||..|.+..+ +..||.|+..|..+
T Consensus 23 ~ICSfECTFC~~C~e~~l---~~~CPNCgGelv~R 54 (57)
T PF06906_consen 23 YICSFECTFCADCAETML---NGVCPNCGGELVRR 54 (57)
T ss_pred eEEeEeCcccHHHHHHHh---cCcCcCCCCccccC
Confidence 343455799999999876 35799999887654
No 362
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=51.90 E-value=5.2e+02 Score=31.47 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=48.6
Q ss_pred cccHHHHHHHHhhhHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhh------HHHHH
Q 001690 40 KDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSN------SVLSR 113 (1028)
Q Consensus 40 k~~~~~l~r~i~~l~~lleel~~~~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyll~~~~------~~~~~ 113 (1028)
++...+..+++..+..-++||...++...+ ...|+.-+..|..+..+.+.+... +.++..+ .+...
T Consensus 181 ~~~~~~~~~eld~L~~ql~ELe~~~l~~~E-----~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~ 252 (563)
T TIGR00634 181 QQKEQELAQRLDFLQFQLEELEEADLQPGE-----DEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEG 252 (563)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCcCCCc-----HHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHH
Confidence 344478889999999999999988763223 555666666666677776666544 1222222 35556
Q ss_pred HHHHHHHHHHH
Q 001690 114 MQHLAREIAIT 124 (1028)
Q Consensus 114 ~~~~~~~l~~~ 124 (1028)
+..+...+...
T Consensus 253 l~~~~~~l~~~ 263 (563)
T TIGR00634 253 LGEAQLALASV 263 (563)
T ss_pred HHHHHHHHHHh
Confidence 66555555544
No 363
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.72 E-value=93 Score=36.59 Aligned_cols=132 Identities=13% Similarity=0.029 Sum_probs=83.4
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHH
Q 001690 673 TQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDE 752 (1028)
Q Consensus 673 ~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 752 (1028)
..+-+|+.+.++-+|.+.+..+..-- .+. ...+.+..|+..--+..+++++.+|+.+|+-++..+.+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy-~GT---------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--- 585 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAY-VGT---------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--- 585 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHH-hcC---------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---
Confidence 34556777888877777665554221 122 12367888887733444458999999999988775543
Q ss_pred HHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHhhcCCHHHHH
Q 001690 753 VLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQ 832 (1028)
Q Consensus 753 ~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~ 832 (1028)
.++..+++|... ++..+..+.+-+|--.++..-.+. .+.+|-.|+...+.-|++
T Consensus 586 ------~lv~tvelLs~s------------hN~hVR~g~AvaLGiacag~G~~~--------a~diL~~L~~D~~dfVRQ 639 (926)
T COG5116 586 ------LLVGTVELLSES------------HNFHVRAGVAVALGIACAGTGDKV--------ATDILEALMYDTNDFVRQ 639 (926)
T ss_pred ------hhhHHHHHhhhc------------cchhhhhhhHHHhhhhhcCCccHH--------HHHHHHHHhhCcHHHHHH
Confidence 577788888753 235555555555554443322221 245566677777888999
Q ss_pred HHHHHHHhhhh
Q 001690 833 RAASALADLSQ 843 (1028)
Q Consensus 833 ~Aa~aL~~ls~ 843 (1028)
.|..|++-+..
T Consensus 640 ~AmIa~~mIl~ 650 (926)
T COG5116 640 SAMIAVGMILM 650 (926)
T ss_pred HHHHHHHHHHh
Confidence 99998886654
No 364
>PLN02189 cellulose synthase
Probab=51.51 E-value=9.3 Score=48.27 Aligned_cols=48 Identities=25% Similarity=0.601 Sum_probs=37.4
Q ss_pred CcccCcCcccc-----ccCceEc--cCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNEL-----MEDPVAI--VCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~-----~~dPv~~--~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
..-.|+||.+- .-+|.+. .||--.||.|.+-=.++|+..||.|+++..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999875 3356653 588889999997666778899999999876
No 365
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=51.10 E-value=99 Score=37.64 Aligned_cols=132 Identities=10% Similarity=0.159 Sum_probs=92.6
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhh-cCCCHHHHHHHHHHHHHhhcCcchHHH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF-NRGSQETRALMASALRNMRLDESSIKT 529 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~ 529 (1028)
..++|.|..-+++.+..+|..++..+-..+..-+ ...+..-++|.+-.+- ++.+..++.+++.+++.+... -.+..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-lD~~~ 464 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-LDKAA 464 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-HHHHH
Confidence 3577888888888999999999999888775544 3444555677777763 677888999999999988721 11222
Q ss_pred HhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhcc
Q 001690 530 LKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFV 588 (1028)
Q Consensus 530 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~ 588 (1028)
+.+ -+.++.+-.+..++.+....+++..++.........++.+ .++|.++-+...+
T Consensus 465 v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~-~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 465 VLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAE-NVLPLLIPLSVAP 520 (700)
T ss_pred hHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehh-hhhhhhhhhhhcc
Confidence 332 3566667777888999988888888887765553233333 5788877777654
No 366
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.62 E-value=11 Score=41.49 Aligned_cols=48 Identities=27% Similarity=0.463 Sum_probs=39.8
Q ss_pred cccCcCccccccC---ceEccCcccchHHHHHHHHhcCCCCCCCccccccc
Q 001690 260 SLVCPLCNELMED---PVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 260 ~~~Cpic~~~~~d---Pv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
.+.|.|+++.|.| |++.|-|++|=...|+.|-...+..||.++..+..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 3668888888875 88899999999999999987555899999887654
No 367
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=50.28 E-value=30 Score=33.48 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001690 536 IHNVIQMLSSNSPVCKSACLKCIKTL 561 (1028)
Q Consensus 536 i~~Lv~lL~s~~~~~~~~A~~aL~nL 561 (1028)
|.+||++|.+.+..+...|+.+|.+.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 89999999988999999999999874
No 368
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.97 E-value=12 Score=36.42 Aligned_cols=32 Identities=22% Similarity=0.664 Sum_probs=25.5
Q ss_pred ccCcccchHHHHHHHHhc----C-C-----CCCCCccccccc
Q 001690 276 IVCGHSFERKAIQEHFQR----G-G-----KNCPTCRQELLS 307 (1028)
Q Consensus 276 ~~cght~c~~ci~~~~~~----~-~-----~~CP~~~~~l~~ 307 (1028)
+.||+.|-.-|+..|++. + . ..||-|..++.-
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 579999999999999973 1 1 469999887643
No 369
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=49.90 E-value=2.5e+02 Score=35.52 Aligned_cols=186 Identities=11% Similarity=0.077 Sum_probs=108.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccc
Q 001690 537 HNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFEL 616 (1028)
Q Consensus 537 ~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~ 616 (1028)
+.+-.-+.+.+-.-|..|+..++-...... ....-...|.+-.++.....+. ...+...++.+|..++..-...
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDa-N~~v~~~aa~~l~~ia~~lr~~---- 329 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDA-NINVVMLAAQILELIAKKLRPL---- 329 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCc-chhHHHHHHHHHHHHHHhcchh----
Confidence 344444556677777788887777766654 1111111134444445444332 2556678888888888743211
Q ss_pred cccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHH
Q 001690 617 HHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHC 696 (1028)
Q Consensus 617 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~ 696 (1028)
..=...++.+.+++-+....+.++..+..++-.++.... - ....+.+..++++.++.++.....++..
T Consensus 330 ----~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l-~~~~~~I~e~lk~knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 330 ----FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------L-SKMSEAILEALKGKNPQIKGECLLLLDR 397 (815)
T ss_pred ----hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------H-HHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 011234567888888888888888877777666554221 1 3455667788999999998886655554
Q ss_pred hcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHhcC
Q 001690 697 ISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQL 743 (1028)
Q Consensus 697 Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL 743 (1028)
............. .-.+.++.++....+.+. +++.+|..+++-+
T Consensus 398 ~~~~~~~~~~~~~--t~~~l~p~~~~~~~D~~~-~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 398 KLRKLGPKTVEKE--TVKTLVPHLIKHINDTDK-DVRKAALEAVAAV 441 (815)
T ss_pred HHhhcCCcCcchh--hHHHHhHHHhhhccCCcH-HHHHHHHHHHHHH
Confidence 4422221111111 113456666666665554 8888888777654
No 370
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.80 E-value=4.9e+02 Score=30.53 Aligned_cols=150 Identities=9% Similarity=0.052 Sum_probs=85.8
Q ss_pred hchhHHHHHhhccC------CchhHHHHHHHHhhhc-hhhhhhhhcccchHHHHHHHhhc-CChhhHHHHHHHHhccccC
Q 001690 411 AGAVRRIVKQICKG------ETMPEAIEVLSELTKR-ETLGEKIGNTKDCITIMVSLLHN-NNPNLSQKAHDVLQNLSHN 482 (1028)
Q Consensus 411 ~g~i~~lv~~L~~~------e~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~I~~Lv~lL~~-~~~~~~~~a~~~L~nL~~~ 482 (1028)
.|.+..++..+... ..+..|+..|.+.+.. |+-...... -.+..++.-|.+ .+.+++..++.+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~--~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT--TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 45555555555432 5677888888888664 444444433 345556655554 4567888888887766544
Q ss_pred chhHHHHHHcCCch---hHHHhhcCCCHHHHHHHHHHHHHhhcCc--chHHHHhh--CCcHHHHHHHhcCCCHHHHHHHH
Q 001690 483 THFAVKMAEAGYFQ---PFVACFNRGSQETRALMASALRNMRLDE--SSIKTLKD--RQFIHNVIQMLSSNSPVCKSACL 555 (1028)
Q Consensus 483 ~~n~~~i~~~G~v~---~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~~i~~--~g~i~~Lv~lL~s~~~~~~~~A~ 555 (1028)
-.|.. ++.+.++ .+..+..+.+++++..+...++.|+... ..+....+ .+...+|+--|..++|.+-. |+
T Consensus 331 ~~~~~--l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-AC 407 (533)
T KOG2032|consen 331 ASNDD--LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-AC 407 (533)
T ss_pred hhhcc--hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HH
Confidence 33322 2233333 4555678889999999888887775432 22333222 22234555556677776544 44
Q ss_pred HHHHHHhcCC
Q 001690 556 KCIKTLIAHS 565 (1028)
Q Consensus 556 ~aL~nL~~~~ 565 (1028)
+.....|...
T Consensus 408 r~~~~~c~p~ 417 (533)
T KOG2032|consen 408 RSELRTCYPN 417 (533)
T ss_pred HHHHHhcCch
Confidence 4444444443
No 371
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=49.57 E-value=68 Score=30.16 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=52.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHHHHHhhhcCCC--------hhHHHHHHHHHHHhc
Q 001690 628 NVNVFLQLIANTERETKIQFLHLLVKLCYKS-EKVRNLIESNNDAITQLFSSLDSDQ--------PVVRRWAMRLIHCIS 698 (1028)
Q Consensus 628 ~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~--------~~v~~~A~~~L~~Ls 698 (1028)
++..|..-|+..+|.++.+++++|..+|... +.++..++.+...|..+..+-...+ ..||..|-.++..|-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 5666777788889999999999999999865 6777766664666777766655322 267888888877765
No 372
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=48.81 E-value=10 Score=30.69 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=9.1
Q ss_pred cchHHHHHHHHh
Q 001690 281 SFERKAIQEHFQ 292 (1028)
Q Consensus 281 t~c~~ci~~~~~ 292 (1028)
.|||.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999997
No 373
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=48.50 E-value=3.8e+02 Score=28.95 Aligned_cols=174 Identities=8% Similarity=0.054 Sum_probs=96.9
Q ss_pred CcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCH----HHHHHHHHHH
Q 001690 576 ATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTER----ETKIQFLHLL 651 (1028)
Q Consensus 576 g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~----~~~~~a~~aL 651 (1028)
|..+-+..++..|--.....+.+..+|..|...+.++-.-..+.+-.+.=-..+|.++.-+..+.| ..-..++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 455555556655533334557888888888875432111000012223333456777777776662 3344677788
Q ss_pred HHhhcCCHHHHHHHHhhhchHHHHH-hhhcCCChhHHHHHHHHHHHhcCCC-CCCCCCCCCCCCcccHHHHHHhccCCCC
Q 001690 652 VKLCYKSEKVRNLIESNNDAITQLF-SSLDSDQPVVRRWAMRLIHCISEGN-PNGVPLPPSPGKETAINTVAAIFTCSPD 729 (1028)
Q Consensus 652 ~~L~~~~~~~~~~i~~~~g~v~~Lv-~Ll~~~~~~v~~~A~~~L~~Ls~~~-~~~~i~~~~~~~~~~i~~Lv~lL~~~~~ 729 (1028)
..+|.... ...+..+. .+.+............+..+|.++. +. .+...+..|+.+|.++..
T Consensus 140 a~~a~~~~---------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~--------~~~~~l~~Ll~lL~n~~~ 202 (262)
T PF14225_consen 140 AQVAEAQG---------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD--------HEFQILTFLLGLLENGPP 202 (262)
T ss_pred HHHHHhCC---------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch--------hHHHHHHHHHHHHhCCcH
Confidence 88874321 12233233 3444444444555555666666322 21 234567778899988765
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHh
Q 001690 730 VEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICS 769 (1028)
Q Consensus 730 ~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~ 769 (1028)
-.+...+.+|..+-.. .+.++. ..++.+.+++++|++
T Consensus 203 -w~~~~~L~iL~~ll~~-~d~~~~-~~~dlispllrlL~t 239 (262)
T PF14225_consen 203 -WLRRKTLQILKVLLPH-VDMRSP-HGADLISPLLRLLQT 239 (262)
T ss_pred -HHHHHHHHHHHHHhcc-ccCCCC-cchHHHHHHHHHhCC
Confidence 7777788877776552 222222 556678888888874
No 374
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.28 E-value=14 Score=43.35 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=30.2
Q ss_pred CCcccCcCccccccC-ceEccCcccchHHHHHHHHhc
Q 001690 258 IESLVCPLCNELMED-PVAIVCGHSFERKAIQEHFQR 293 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~d-Pv~~~cght~c~~ci~~~~~~ 293 (1028)
.....|.||.+-..+ .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 467999999997775 555799999999999998863
No 375
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=48.26 E-value=11 Score=38.17 Aligned_cols=48 Identities=27% Similarity=0.509 Sum_probs=36.6
Q ss_pred CcccCcCccccccCceE-ccCcccchHHHHHHHHhcCCCCCCCccccccc
Q 001690 259 ESLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
.-..|.+|..+.---+. =+||-.|-+.|+++++.+ ...||.|+--.++
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 45689999997654443 367888999999999985 7789999754443
No 376
>PRK12495 hypothetical protein; Provisional
Probab=48.20 E-value=29 Score=35.66 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCcccCcCcccc
Q 001690 203 QTELELLKQEKEELEAEKKQAEALQLTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNEL 269 (1028)
Q Consensus 203 ~~e~~~l~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Cpic~~~ 269 (1028)
+.|.++|++..+... + +-...+++-++|.+... .-.+.|+.|...
T Consensus 7 EaEREkLREKye~d~--~---~R~~~~~ma~lL~~gat-----------------msa~hC~~CG~P 51 (226)
T PRK12495 7 EAEREKLREKYEQDE--Q---KREATERMSELLLQGAT-----------------MTNAHCDECGDP 51 (226)
T ss_pred HHHHHHHHHHHhhhH--H---HHHHHHHHHHHHHhhcc-----------------cchhhcccccCc
Confidence 456667766554321 1 22246666666664321 146788888764
No 377
>PLN02436 cellulose synthase A
Probab=48.18 E-value=11 Score=47.74 Aligned_cols=48 Identities=19% Similarity=0.557 Sum_probs=37.6
Q ss_pred CcccCcCcccc-----ccCceEc--cCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNEL-----MEDPVAI--VCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~-----~~dPv~~--~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
..-.|.||.+- .-+|.+. .||--.||.|.+-=.+.|+..||.|+++..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999874 3357653 588889999997666778899999998876
No 378
>PLN02195 cellulose synthase A
Probab=47.59 E-value=12 Score=46.89 Aligned_cols=46 Identities=17% Similarity=0.434 Sum_probs=36.8
Q ss_pred ccCcCccc-----cccCceEc--cCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 261 LVCPLCNE-----LMEDPVAI--VCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 261 ~~Cpic~~-----~~~dPv~~--~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
-.|.||.+ .+-+|.+. .||--.||.|-+-=-++|+..||.|+++..
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 47999987 34577763 799999999996555678899999999887
No 379
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.50 E-value=5.8e+02 Score=30.73 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=50.8
Q ss_pred ccccHHHHHHHHhhhHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhh----HHHHHH
Q 001690 39 GKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSN----SVLSRM 114 (1028)
Q Consensus 39 ~k~~~~~l~r~i~~l~~lleel~~~~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyll~~~~----~~~~~~ 114 (1028)
.+++-++..+++.+|.-=++||...++...+ ...|.+-+.-|..+..|.+.|++ .|-++.++ .+...+
T Consensus 176 ~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE-----~e~L~~e~~rLsn~ekl~~~~~~---a~~~L~ge~~~~~~~~~l 247 (557)
T COG0497 176 LQEKERERAQRADLLQFQLEELEELNLQPGE-----DEELEEERKRLSNSEKLAEAIQN---ALELLSGEDDTVSALSLL 247 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHhhHHHHHHHHHH---HHHHHhCCCCchhHHHHH
Confidence 3566689999999999999999877764333 66677777777777777777743 34444432 345555
Q ss_pred HHHHHHHH
Q 001690 115 QHLAREIA 122 (1028)
Q Consensus 115 ~~~~~~l~ 122 (1028)
......+.
T Consensus 248 ~~a~~~l~ 255 (557)
T COG0497 248 GRALEALE 255 (557)
T ss_pred HHHHHHHH
Confidence 55444443
No 380
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=47.44 E-value=4e+02 Score=28.83 Aligned_cols=129 Identities=13% Similarity=0.177 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhcC-cchHHHHhhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHH
Q 001690 508 ETRALMASALRNMRLD-ESSIKTLKDRQFIHNVIQMLS-SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLI 585 (1028)
Q Consensus 508 ~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL 585 (1028)
..|...-..|..|..+ .+.-..++ .+.+..+++++. ..+|+..-.+...+..+...-+. . ...+-+.+.+
T Consensus 97 ~~R~~~~~ll~~l~~~~~~~l~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-~------~~~e~lFd~~ 168 (262)
T PF14500_consen 97 STRYAVYQLLDSLLENHREALQSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-S------EFAEDLFDVF 168 (262)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-c------hhHHHHHHHh
Confidence 4556666666666432 22222222 346778888887 56899888888888777554221 1 2333344444
Q ss_pred hc-------cC--C-ChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 001690 586 QF-------VR--S-DPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLC 655 (1028)
Q Consensus 586 ~~-------~~--~-~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~ 655 (1028)
.. +. + ....++.-...|.++-.+.. .....++|.|++-|.++++.+|..++.+|...+
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~------------~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP------------LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred hheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH------------hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 31 11 1 12334555566666655332 223468999999999999999999999998765
Q ss_pred c
Q 001690 656 Y 656 (1028)
Q Consensus 656 ~ 656 (1028)
.
T Consensus 237 ~ 237 (262)
T PF14500_consen 237 E 237 (262)
T ss_pred H
Confidence 4
No 381
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=47.35 E-value=6.4e+02 Score=31.21 Aligned_cols=276 Identities=12% Similarity=0.091 Sum_probs=140.9
Q ss_pred cchHHHHHHHhh-c-------CChhhHHHHHHHHhcccc---CchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHH
Q 001690 451 KDCITIMVSLLH-N-------NNPNLSQKAHDVLQNLSH---NTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRN 519 (1028)
Q Consensus 451 ~g~I~~Lv~lL~-~-------~~~~~~~~a~~~L~nL~~---~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~ 519 (1028)
.|.++.++..|. + +++...+.|.+.+.++.. .+.-...+.+.=+++.++..+++..--++.+|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 689999999994 1 234455566666666644 22223333344456666667777777789999999988
Q ss_pred hhcC-cchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhC-CCcHHHHHHHHhccCCChhHHHH
Q 001690 520 MRLD-ESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLD-PATIPLLLGLIQFVRSDPHLKHE 597 (1028)
Q Consensus 520 La~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~-~g~v~~L~~lL~~~~~~~~l~~~ 597 (1028)
++.+ +++- .. ..+.......|.+.+..++-.|+-||.-+-.+.+...++-.. ++.++.|+.+-..-+. +.
T Consensus 487 ~eeDfkd~~-il--l~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei-----D~ 558 (970)
T COG5656 487 IEEDFKDNG-IL--LEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI-----DP 558 (970)
T ss_pred HHHhcccch-HH--HHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc-----hH
Confidence 8432 2211 11 123445566777888888999999998887776555554432 1334444444332221 12
Q ss_pred HHHHHHHHHcCCCCCcccccccchhhcccccHH----HHHHHhcCC------CHHHHHHHHHHHHHhhc------CCHHH
Q 001690 598 AAEILALMVGGCQHPQFELHHGLQELQSEHNVN----VFLQLIANT------ERETKIQFLHLLVKLCY------KSEKV 661 (1028)
Q Consensus 598 a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~----~Lv~lL~~~------~~~~~~~a~~aL~~L~~------~~~~~ 661 (1028)
...++-.+...-.+ ...+....+.. ..+. -..+++..+ ..+-+..|.+.|..+.+ +.+.+
T Consensus 559 LS~vMe~fVe~fse---ELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~v 634 (970)
T COG5656 559 LSMVMESFVEYFSE---ELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLV 634 (970)
T ss_pred HHHHHHHHHHHhHH---hhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 22222223221000 00000001110 1122 222233322 12334455555554432 11333
Q ss_pred HHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCCHHHHHHHHHHHh
Q 001690 662 RNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIIS 741 (1028)
Q Consensus 662 ~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~ 741 (1028)
-+-+.. ...|..--.+.+.-.+.-..|+..+-+.+ ...+++.. +.-|.++-+.+++.++........++-++.
T Consensus 635 Lk~le~--slypvi~Filkn~i~dfy~Ea~dildg~t--f~skeI~p---imwgi~Ell~~~l~~~~t~~y~ee~~~al~ 707 (970)
T COG5656 635 LKYLEV--SLYPVISFILKNEISDFYQEALDILDGYT--FMSKEIEP---IMWGIFELLLNLLIDEITAVYSEEVADALD 707 (970)
T ss_pred HHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHhhhh--HHHHHhhh---hhhHHHHHHHhcccccchhhhHHHHHHHHH
Confidence 222222 22233323456666677777887777666 23344443 334666666677776654344466666777
Q ss_pred cCCC
Q 001690 742 QLPK 745 (1028)
Q Consensus 742 nL~~ 745 (1028)
|+..
T Consensus 708 nfit 711 (970)
T COG5656 708 NFIT 711 (970)
T ss_pred HHHH
Confidence 7644
No 382
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.08 E-value=7.3e+02 Score=31.76 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=74.2
Q ss_pred CcHHHHHHHHh------ccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHH
Q 001690 576 ATIPLLLGLIQ------FVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLH 649 (1028)
Q Consensus 576 g~v~~L~~lL~------~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~ 649 (1028)
|.++-+++++. ....++.-++-|..++++|+. -...+. ..+-..+.-.++.++-.++++.--++..|++
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~-~L~K~s----~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLAS-ILLKKS----PYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHH-HHccCC----chHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 67888888887 333346667888888888884 111111 1122334445666666778888889999999
Q ss_pred HHHHhhcCCHHHHHHHHhhhchHHHHHhhhc-CCChhHHHHHHHHHHHhcC
Q 001690 650 LLVKLCYKSEKVRNLIESNNDAITQLFSSLD-SDQPVVRRWAMRLIHCISE 699 (1028)
Q Consensus 650 aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~-~~~~~v~~~A~~~L~~Ls~ 699 (1028)
++..++.-.-.....+ ..++..-...+. +.+-.|+..|+-+|..+-.
T Consensus 485 vl~~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred HHHHHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 9999985431111111 134555556555 4445899999999998873
No 383
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=46.56 E-value=23 Score=45.54 Aligned_cols=61 Identities=21% Similarity=0.582 Sum_probs=40.1
Q ss_pred CcccCcCccc--cccCceE-ccCcccchHHHHHHHHhc---CC------CCCCCccccccccCCcCccchhhhHHHHHH
Q 001690 259 ESLVCPLCNE--LMEDPVA-IVCGHSFERKAIQEHFQR---GG------KNCPTCRQELLSLDLMPNLSLRSSIEEWKQ 325 (1028)
Q Consensus 259 ~~~~Cpic~~--~~~dPv~-~~cght~c~~ci~~~~~~---~~------~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 325 (1028)
.+-.|-||+. +---|.+ +.|||.|--.|..+.++. |. ..||.|..++.+ ..|+.+++-.++
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH------~~LkDLldPiKe 3557 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH------IVLKDLLDPIKE 3557 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh------HHHHHHHHHHHH
Confidence 4566888863 3345665 899999977777665542 22 479999988765 345555554444
No 384
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=46.50 E-value=5.6e+02 Score=30.29 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhccc
Q 001690 547 SPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSE 626 (1028)
Q Consensus 547 ~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~ 626 (1028)
..+.|..+...|..+...........+. .+...+.....+..+ ..-..+|..|..++.+-.+ .+.
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~R~-----~fF~~I~~~~~~~d~-~~~l~aL~~LT~~Grdi~~---------~~~ 106 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLMRA-----EFFRDISDPSNDDDF-DLRLEALIALTDNGRDIDF---------FEY 106 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHHHH-----HHHHHHhcCCCchhH-HHHHHHHHHHHcCCcCchh---------ccc
Confidence 4567888888887776654332111111 122223333322222 3445557777775543322 344
Q ss_pred ccHHHHHHHhcCC---------------------------CHHHHHHHHHHHHHhhcCCHH-HHHHHHhhhchHHHHHhh
Q 001690 627 HNVNVFLQLIANT---------------------------ERETKIQFLHLLVKLCYKSEK-VRNLIESNNDAITQLFSS 678 (1028)
Q Consensus 627 g~v~~Lv~lL~~~---------------------------~~~~~~~a~~aL~~L~~~~~~-~~~~i~~~~g~v~~Lv~L 678 (1028)
+..+.|..++... ........+..+.++...+.. .-.... .+.+..++.+
T Consensus 107 ~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i--~~lv~~i~~i 184 (464)
T PF11864_consen 107 EIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEI--SSLVDQICTI 184 (464)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHHH
Confidence 5566666665310 112223445555565554411 111111 2455556666
Q ss_pred hcCCC-hhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCCC-HHHHHHHHHHHhcCCCCChHHHHHHHh
Q 001690 679 LDSDQ-PVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPD-VEERSLAAGIISQLPKDDIYVDEVLCK 756 (1028)
Q Consensus 679 l~~~~-~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~~-~~~~~~a~~~L~nL~~~~~~~~~~l~~ 756 (1028)
....+ +..-+.+..++-.+..++. +-.+.++.+|..|.+.-. ......+..++.||......
T Consensus 185 C~~Ts~~~di~~~L~vldaii~y~~---------iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g------- 248 (464)
T PF11864_consen 185 CKSTSSEDDIEACLSVLDAIITYGD---------IPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG------- 248 (464)
T ss_pred HhccCcHHHHHHHHHHHHHHHHcCc---------CChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccH-------
Confidence 54443 3444677777776653321 122456666666554321 13335667777777653221
Q ss_pred ccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhc--CCHHHHHHHhhcCCHHHHHHH
Q 001690 757 SEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKL--EVYPSLIRVLSTGSSLAKQRA 834 (1028)
Q Consensus 757 ~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~--~~i~~Lv~lL~s~~~~vk~~A 834 (1028)
.-++..++.+|.+.+. ....+..++.|++..+..+......+-...+.-. -++|.|...|+.+++.+=.+.
T Consensus 249 ~~~i~~L~~iL~~~~~-------~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eI 321 (464)
T PF11864_consen 249 HSAIRTLCDILRSPDP-------QNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEI 321 (464)
T ss_pred HHHHHHHHHHHcccCc-------cccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHH
Confidence 2246678888853211 2233577778888877776643211111111111 257778888887766555555
Q ss_pred HHHHHhhh
Q 001690 835 ASALADLS 842 (1028)
Q Consensus 835 a~aL~~ls 842 (1028)
...+.++-
T Consensus 322 l~~i~~ll 329 (464)
T PF11864_consen 322 LLLINRLL 329 (464)
T ss_pred HHHHHHHH
Confidence 55555554
No 385
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=46.25 E-value=4.9e+02 Score=30.35 Aligned_cols=173 Identities=18% Similarity=0.207 Sum_probs=88.9
Q ss_pred HHHHHHH-HHHHhhcCCHHHHHHHHhhhchHHHHHhhhcC-CChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHHH
Q 001690 643 TKIQFLH-LLVKLCYKSEKVRNLIESNNDAITQLFSSLDS-DQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTV 720 (1028)
Q Consensus 643 ~~~~a~~-aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~-~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~L 720 (1028)
-+..|+. ...-+|.++..++..-.. ..+..+++.|.. .++-.+.-|.+.|..+....+. .+.. ..+-++..+
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-~l~D---stE~ai~K~ 376 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-RLFD---STEIAICKV 376 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-hhhc---hHHHHHHHH
Confidence 3444554 334445555555554332 455667777766 6668899999999988843322 2222 123334444
Q ss_pred HHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcC
Q 001690 721 AAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTD 800 (1028)
Q Consensus 721 v~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~ 800 (1028)
+..=.++.+...+.++-.++.-++...+... |..+..++.+.+ ....-.++..+.++..
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D-------------~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTAD-------------EPRAVAVIKMLTKLFE 435 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCc-------------chHHHHHHHHHHHHHh
Confidence 4443444443333333233333333333321 222333333221 1111122223333332
Q ss_pred CC-ChHHHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHHHhhhhc
Q 001690 801 PT-KPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQS 844 (1028)
Q Consensus 801 ~~-~~~~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL~~ls~~ 844 (1028)
.- ..+....+ .++.|.+++--.+.+..||+.|..+|..+...
T Consensus 436 ~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 436 RLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 21 22332222 37799999999999999999999999887653
No 386
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=46.16 E-value=61 Score=31.53 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=59.0
Q ss_pred CcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhc-CChhHHHHHHHHHHHHHh
Q 001690 908 DAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEK-GSLSAKTKALDLFQMIQK 982 (1028)
Q Consensus 908 gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~~~~~A~~~l~~~~~ 982 (1028)
.|+..|.+-|.++|+.++..|+..|..+..+.... ....+...+-+..|++++.. .++.++++.+.+|+....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~--fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR--FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH--HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46888888899999999999999999999775531 12355666777788888886 789999999999988763
No 387
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=45.47 E-value=19 Score=32.93 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=19.9
Q ss_pred cccchHHHHHHHHhc--------CCCCCCCccc
Q 001690 279 GHSFERKAIQEHFQR--------GGKNCPTCRQ 303 (1028)
Q Consensus 279 ght~c~~ci~~~~~~--------~~~~CP~~~~ 303 (1028)
.-.||..|+..++.. ....||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999988753 3478999976
No 388
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.21 E-value=59 Score=31.39 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=52.6
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhc-C-ChhhhHHHHhhccHHHHHHHHhc--CHH---HHHHHHHHHHHHhc
Q 001690 331 RFQNAIIKINSDDQSRRKSALEEMKNIM-E-LPQYAEKAAKAGLIPKLVEFLKD--TRL---STEAILKCLYFLAK 399 (1028)
Q Consensus 331 ~i~~~~~~L~s~~~~~~~~al~~L~~l~-~-~~~~r~~i~~~g~ip~Lv~lL~s--~~~---~~~~A~~~L~~Ls~ 399 (1028)
.+..+..++.++++..+..|+.-|..+. . ++..+..+....++..|.+++.+ ... +++.+...+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3456778899999999999998888777 3 34556777777899999998876 333 78888887766643
No 389
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=44.34 E-value=4.6e+02 Score=31.06 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=36.5
Q ss_pred CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhh-cCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhc
Q 001690 425 ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLH-NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFN 503 (1028)
Q Consensus 425 e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~-~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~ 503 (1028)
+.|+.+...|..+...+.......+ ..+...+. ...++.-..-+.+|..|+.+..+. ...+.+..|.|...|.
T Consensus 44 e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 44 EARRAALELLIACIKRQDSSSGLMR-----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSWLE 117 (464)
T ss_pred HHHHHHHHHHHHHHHccccccHHHH-----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHHHH
Confidence 5666666666666554332111111 01111122 233333445556666666665555 3356667777777764
No 390
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=43.98 E-value=94 Score=29.69 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=53.2
Q ss_pred hhHHHHHhhhcCCChHHHHHHHHHHHHhc-CC-hhhhHHHHhhccHHHHHHHHh---c-CHHHHHHHHHHHHHHhc
Q 001690 330 LRFQNAIIKINSDDQSRRKSALEEMKNIM-EL-PQYAEKAAKAGLIPKLVEFLK---D-TRLSTEAILKCLYFLAK 399 (1028)
Q Consensus 330 ~~i~~~~~~L~s~~~~~~~~al~~L~~l~-~~-~~~r~~i~~~g~ip~Lv~lL~---s-~~~~~~~A~~~L~~Ls~ 399 (1028)
..+..+..+++++++.++..|+.-|..+. .. ...+..+....++..+++++. . +..++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566778899999999999998888877 33 334566666677777888885 3 77899998888877754
No 391
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.70 E-value=2.8e+02 Score=32.93 Aligned_cols=152 Identities=8% Similarity=0.053 Sum_probs=87.1
Q ss_pred HHhhcCCCHHHHHHHHHHHHHh-hcCcchHHHHhhCCcHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCC
Q 001690 499 VACFNRGSQETRALMASALRNM-RLDESSIKTLKDRQFIHNVIQM-LSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPA 576 (1028)
Q Consensus 499 v~lL~~~~~~~~~~a~~~L~~L-a~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g 576 (1028)
-+++.+.++-++..-+-+++.- +++ .+.|+|..|+.. .+.++..+|++|+-+|+-+|..+. .
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~ 585 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------D 585 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------c
Confidence 3455566666665554443321 111 235678888887 678899999999999999887643 4
Q ss_pred cHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 001690 577 TIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCY 656 (1028)
Q Consensus 577 ~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 656 (1028)
.++..+++|..... ..++...+-+|.--|.+..++ -++..|-.|+..+..-++..|.-++.-+..
T Consensus 586 ~lv~tvelLs~shN-~hVR~g~AvaLGiacag~G~~--------------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 586 LLVGTVELLSESHN-FHVRAGVAVALGIACAGTGDK--------------VATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred hhhHHHHHhhhccc-hhhhhhhHHHhhhhhcCCccH--------------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 56666677764432 444444444455445443321 145556666667777777777766655543
Q ss_pred -CCHHHHHHHHhhhchHHHHHhhhcCCCh
Q 001690 657 -KSEKVRNLIESNNDAITQLFSSLDSDQP 684 (1028)
Q Consensus 657 -~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~ 684 (1028)
+++.....+ .+.++.+.+++...++
T Consensus 651 Q~n~~Lnp~v---~~I~k~f~~vI~~Khe 676 (926)
T COG5116 651 QCNPELNPNV---KRIIKKFNRVIVDKHE 676 (926)
T ss_pred hcCcccChhH---HHHHHHHHHHHhhhhH
Confidence 222211111 2344456666655544
No 392
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=43.17 E-value=73 Score=30.90 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=58.8
Q ss_pred CcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHh-cCChhHHHHHHHHHHHHHhh
Q 001690 908 DAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLE-KGSLSAKTKALDLFQMIQKH 983 (1028)
Q Consensus 908 gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~~~~~A~~~l~~~~~~ 983 (1028)
.|+..|-+-|.++|+.++..|+..|..+..+... .....+.+.+-+..++.++. ..++.++++++.+++.....
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~--~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGT--HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH--HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999977332 12245666677778888886 67788999999999887743
No 393
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=42.75 E-value=77 Score=30.61 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=57.1
Q ss_pred CcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhc------CChhHHHHHHHHHHHHH
Q 001690 908 DAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEK------GSLSAKTKALDLFQMIQ 981 (1028)
Q Consensus 908 gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~------~~~~~~~~A~~~l~~~~ 981 (1028)
.|+..|.+-|.++|+.++..|+..|..+..+-.. .....+...+-+.-+++++.. .++.++++.+.+++..-
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~--~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGE--RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH--HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999976442 112456666667778888852 56899999999988877
Q ss_pred h
Q 001690 982 K 982 (1028)
Q Consensus 982 ~ 982 (1028)
.
T Consensus 116 ~ 116 (139)
T cd03567 116 L 116 (139)
T ss_pred H
Confidence 4
No 394
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=42.65 E-value=3.8e+02 Score=27.22 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=73.8
Q ss_pred cHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCc
Q 001690 535 FIHNVIQ-MLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQ 613 (1028)
Q Consensus 535 ~i~~Lv~-lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~ 613 (1028)
.-++|+. ++.++++++|..|+.+|..|-......-...++.. ....+-..+ ...|+.+..
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~---------~~~~sFtsl----S~tLa~~i~------ 100 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESK---------GPSGSFTSL----SSTLASMIM------ 100 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcC---------CCCCCcccH----HHHHHHHHH------
Confidence 4455555 56789999999999999988666433222222211 000000111 111222211
Q ss_pred ccccccchhhcccccHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCHHHH--HHHHhhhchHHHHHhhhcCCChhHHHHH
Q 001690 614 FELHHGLQELQSEHNVNVFLQLIA-NTERETKIQFLHLLVKLCYKSEKVR--NLIESNNDAITQLFSSLDSDQPVVRRWA 690 (1028)
Q Consensus 614 ~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~--~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A 690 (1028)
..-..|+..|. ..++.+..+++++|..|..+.+..| .-+.. ..+..+..++.+.|..++..+
T Consensus 101 -------------~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~--~~v~~v~~~l~~~d~~v~v~~ 165 (182)
T PF13251_consen 101 -------------ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT--EVVTQVRPLLRHRDPNVRVAA 165 (182)
T ss_pred -------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH--HHHHHHHHHHhcCCCcHHHHH
Confidence 01123344444 3456677788888888877663322 22222 455566677888999999999
Q ss_pred HHHHHHhc
Q 001690 691 MRLIHCIS 698 (1028)
Q Consensus 691 ~~~L~~Ls 698 (1028)
..++..+.
T Consensus 166 l~~~~~l~ 173 (182)
T PF13251_consen 166 LSCLGALL 173 (182)
T ss_pred HHHHHHHH
Confidence 99998887
No 395
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=42.52 E-value=15 Score=46.59 Aligned_cols=48 Identities=23% Similarity=0.597 Sum_probs=37.2
Q ss_pred CcccCcCcccc-----ccCceE--ccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNEL-----MEDPVA--IVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~-----~~dPv~--~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
..-.|.||.+- .-+|.+ -.||--.||.|-+-=.++|+..||.|+++..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34589999874 346766 3688889999996555678899999998875
No 396
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=41.94 E-value=1.1e+02 Score=27.53 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=50.6
Q ss_pred HcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHH
Q 001690 491 EAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKC 557 (1028)
Q Consensus 491 ~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~a 557 (1028)
..+.+..|+..+...+...+..+...|..+..++.+...+.+-|+..-|-++=..-++..+...-.+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456777888887777778899999999999999999999999998886666555555554444333
No 397
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=39.94 E-value=15 Score=24.23 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=4.3
Q ss_pred cCcCcccc
Q 001690 262 VCPLCNEL 269 (1028)
Q Consensus 262 ~Cpic~~~ 269 (1028)
.||-|...
T Consensus 2 ~CP~C~~~ 9 (26)
T PF10571_consen 2 TCPECGAE 9 (26)
T ss_pred cCCCCcCC
Confidence 36666543
No 398
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=39.86 E-value=23 Score=45.18 Aligned_cols=41 Identities=29% Similarity=0.651 Sum_probs=28.3
Q ss_pred CCCCcccCcCcc--ccccCceEccCcccchHHHHHHHHhcCCCCCCCcccccccc
Q 001690 256 YPIESLVCPLCN--ELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSL 308 (1028)
Q Consensus 256 ~~~~~~~Cpic~--~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~ 308 (1028)
.+|.++.||-|+ +.+.|+ .+..| | +-..+.||+|+.++...
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~-svgsG--f---------DLpdK~CPkCg~pl~kD 952 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG-SVGSG--F---------DLPDKDCPKCGTPLKKD 952 (1444)
T ss_pred CCCccccCCCCceeeeecCC-CcCCC--C---------CCCCCCCCcCCCccccC
Confidence 346799999996 566666 22333 3 33568999999998653
No 399
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.38 E-value=18 Score=45.82 Aligned_cols=48 Identities=21% Similarity=0.580 Sum_probs=37.8
Q ss_pred CcccCcCcccc-----ccCceEc--cCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNEL-----MEDPVAI--VCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~-----~~dPv~~--~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
..-.|.||.+- .-+|.+. .||--.||.|.+-=.++|+..||.|+++..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45679999874 3467663 688889999996656678899999998875
No 400
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.16 E-value=27 Score=31.86 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=36.7
Q ss_pred HHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHH
Q 001690 469 SQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRA 511 (1028)
Q Consensus 469 ~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~ 511 (1028)
.......|..|+..++--..+++.|+++.|+.+|.+.|.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4456778889999999999999999999999999998877543
No 401
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=38.72 E-value=87 Score=27.84 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=51.0
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 001690 497 PFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHS 565 (1028)
Q Consensus 497 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~ 565 (1028)
..+..|.++.+.+|..+...|.+|..... ...+-..+++..+...|+++++-+--+|+.+|..|+...
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 34566778888899999999999954443 122222456777788889999999999999999998654
No 402
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=37.90 E-value=1.2e+02 Score=36.74 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=74.7
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHH------cCCchhHHHhhcCCCHHHHHHHHHHHHHhh----c
Q 001690 453 CITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAE------AGYFQPFVACFNRGSQETRALMASALRNMR----L 522 (1028)
Q Consensus 453 ~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~------~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La----~ 522 (1028)
....++.+|.++.-..+..-++++.|+..+.....+|++ +..+..|+..|.+.+|-++..|...+..+. .
T Consensus 300 q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 300 QYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 456788899988888888888888888755433334544 234555666667888999999998877773 3
Q ss_pred CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 001690 523 DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLI 562 (1028)
Q Consensus 523 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~ 562 (1028)
.+..|..+ +...+.-|.+.+..+|++|++.+..|-
T Consensus 380 ~~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 380 TVGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred ccchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 44444443 455667778888889999998887773
No 403
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=37.56 E-value=6.8e+02 Score=28.64 Aligned_cols=128 Identities=16% Similarity=0.078 Sum_probs=73.7
Q ss_pred CchhHHHHHHHHhhhchhhhhhhhc-ccchHHHHHHHhh---cCChhhHHHHHHHHhccccCch-------------hHH
Q 001690 425 ETMPEAIEVLSELTKRETLGEKIGN-TKDCITIMVSLLH---NNNPNLSQKAHDVLQNLSHNTH-------------FAV 487 (1028)
Q Consensus 425 e~~~~A~~~L~~Ls~~~~~~~~i~~-~~g~I~~Lv~lL~---~~~~~~~~~a~~~L~nL~~~~~-------------n~~ 487 (1028)
..|..|...|..|++.- ...+.. ..+.|..++.-.. +.+...+..|+..+..|+.... +..
T Consensus 226 TrR~AA~dfl~~L~~~~--~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKF--EKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp SHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CcHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 55677788888887642 111111 0123333332211 2455666677777777765432 345
Q ss_pred HHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHH
Q 001690 488 KMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCI 558 (1028)
Q Consensus 488 ~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL 558 (1028)
.+...-++|-|. -=.+..|-++..|++.+...... -.+..+. +++|.++..|.+++..+...|+.++
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 555565666655 11245577888888888877432 1223333 3799999999999999999988765
No 404
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.53 E-value=16 Score=38.52 Aligned_cols=37 Identities=32% Similarity=0.669 Sum_probs=30.4
Q ss_pred CCCcccCcCccccccCceEccC----cccchHHHHHHHHhc
Q 001690 257 PIESLVCPLCNELMEDPVAIVC----GHSFERKAIQEHFQR 293 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv~~~c----ght~c~~ci~~~~~~ 293 (1028)
+-.-++|-+|.|-+.|--.+.| +|.||-.|-.+.++.
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 3456999999999999876655 699999998888874
No 405
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.30 E-value=4.6e+02 Score=35.15 Aligned_cols=163 Identities=12% Similarity=0.124 Sum_probs=97.8
Q ss_pred hhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccccCchhH--HHHHHcCCchhHHHhhcC
Q 001690 427 MPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFA--VKMAEAGYFQPFVACFNR 504 (1028)
Q Consensus 427 ~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~--~~i~~~G~v~~Lv~lL~~ 504 (1028)
...|-...+.|+...+..... .+.+..++..|.++...++..|+.+|.++..-+... ...+..| .-.-+.+
T Consensus 794 ~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~D 866 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLND 866 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhcc
Confidence 344555555555543333322 578889999999888899999999999987665421 2222332 2334556
Q ss_pred CCHHHHHHHHHHHHHh-hcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHH
Q 001690 505 GSQETRALMASALRNM-RLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLG 583 (1028)
Q Consensus 505 ~~~~~~~~a~~~L~~L-a~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~ 583 (1028)
.+..+++.|+..++.. ..+++.-..+.+ .+..=+.+....+|+.++++|..+|...++-..++. ...+
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~------~cak 935 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD------MCAK 935 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH------HHHH
Confidence 6777999999988865 444443333221 223333355678899999999999987654443332 2333
Q ss_pred HHhccCCChh-HHHHHHHHHHHHHc
Q 001690 584 LIQFVRSDPH-LKHEAAEILALMVG 607 (1028)
Q Consensus 584 lL~~~~~~~~-l~~~a~~~L~nL~~ 607 (1028)
+|...+++.. ++.-+..++.++=-
T Consensus 936 mlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 936 MLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHHhccchhHHHHHHHHHHHHHhc
Confidence 3333333323 55666666665544
No 406
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=37.13 E-value=1.6e+02 Score=28.15 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=57.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-H-hHHHHHhCCCcHHHHHHHHhcc-CCChhHHHHHHHHHHHHHcC
Q 001690 535 FIHNVIQMLSSNSPVCKSACLKCIKTLIAHS-K-MVKHLLLDPATIPLLLGLIQFV-RSDPHLKHEAAEILALMVGG 608 (1028)
Q Consensus 535 ~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~-~-~~~~lv~~~g~v~~L~~lL~~~-~~~~~l~~~a~~~L~nL~~~ 608 (1028)
++..|-+-|.++++.++..|+.+|-.+..+. . .+..+... ..+..|+.++... ..+..++..+...+.+.+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~-~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK-EFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677788888999999999999999988775 3 45555554 6777799999864 44578899999999888873
No 407
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.02 E-value=17 Score=37.69 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=27.6
Q ss_pred CcCccccccCceEccCcc-cchHHHHHHHHhcCCCCCCCccccc
Q 001690 263 CPLCNELMEDPVAIVCGH-SFERKAIQEHFQRGGKNCPTCRQEL 305 (1028)
Q Consensus 263 Cpic~~~~~dPv~~~cgh-t~c~~ci~~~~~~~~~~CP~~~~~l 305 (1028)
|-.|.+--..-+++||.| .+|..|=. +-.+||.|+.+.
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~-----~~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDE-----SLRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEecccccc-----cCccCCCCcChh
Confidence 888887555544579997 77999942 256899998754
No 408
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.59 E-value=62 Score=31.40 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=20.3
Q ss_pred hcccchHHHhhccc--cchHHHHHHHHHHhcc
Q 001690 991 LQRSERILIQLLDD--DALKKKVALVLMQMNI 1020 (1028)
Q Consensus 991 ~~~~~~~Lv~~l~~--~~~~~~aa~~L~~l~~ 1020 (1028)
|.-...|||++|++ ..+...|+.+|.+.=.
T Consensus 92 GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 92 GGYNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp SSTTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred CCCcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 33334699999966 8899999999987533
No 409
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=36.04 E-value=6.5e+02 Score=30.68 Aligned_cols=155 Identities=9% Similarity=0.065 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHhc-CChhhhHHH---HhhccHHHHHHHHhcCHHHHHHHHHHHHHHhcccHHHHHHHHH-hchhHHH
Q 001690 343 DQSRRKSALEEMKNIM-ELPQYAEKA---AKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVE-AGAVRRI 417 (1028)
Q Consensus 343 ~~~~~~~al~~L~~l~-~~~~~r~~i---~~~g~ip~Lv~lL~s~~~~~~~A~~~L~~Ls~~~~~~k~~i~~-~g~i~~l 417 (1028)
..+.+.-|++.||.+. ....+-... .....+..++..+..++..+..++++|.|+-.+. .+++.+.. ...+...
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~-~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNP-AGRELFMSRLESILDP 635 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCH-HHHHHHHHHHHHHhhh
Confidence 4455566888888877 433322221 1223444455444445677888999999998886 77777766 3333333
Q ss_pred HHhhccC---CchhHHHHHHHHhhh--chhhhhhhhcccchHHHHHHHhhc-----CChhhHHHHHHHHhccccCchhHH
Q 001690 418 VKQICKG---ETMPEAIEVLSELTK--RETLGEKIGNTKDCITIMVSLLHN-----NNPNLSQKAHDVLQNLSHNTHFAV 487 (1028)
Q Consensus 418 v~~L~~~---e~~~~A~~~L~~Ls~--~~~~~~~i~~~~g~I~~Lv~lL~~-----~~~~~~~~a~~~L~nL~~~~~n~~ 487 (1028)
+-..+.. ..+..-+....++|. ...+-. .|..+.|...+.. .+-+.....+.||.+|+..+.+..
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 3333333 223332333344433 111111 2445555444442 233456677889999999998888
Q ss_pred HHHHcCCchhHHHhhc
Q 001690 488 KMAEAGYFQPFVACFN 503 (1028)
Q Consensus 488 ~i~~~G~v~~Lv~lL~ 503 (1028)
+++..-.|..++.-++
T Consensus 711 ~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHHhcCHHHHHHHHH
Confidence 8887766777777764
No 410
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=35.88 E-value=60 Score=37.46 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=44.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001690 543 LSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALM 605 (1028)
Q Consensus 543 L~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL 605 (1028)
....+++.+++|..++.+++.+.+++...+-.+..-..+++++..+.+ .+-+.++.+++-+
T Consensus 337 ~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~--~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 337 CAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEP--RVNKAAARALAIL 397 (763)
T ss_pred hcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccccc--ccchhhhHHHHHh
Confidence 346789999999999999999998888877775666777788776543 3334444444443
No 411
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=35.29 E-value=2.1e+02 Score=34.87 Aligned_cols=187 Identities=12% Similarity=0.090 Sum_probs=105.4
Q ss_pred HHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHH
Q 001690 490 AEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVK 569 (1028)
Q Consensus 490 ~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~ 569 (1028)
...+.+|.|+++++..+..+|..-+.-+-+. .+.-...+.+.-..|.+..-+.+.++.+|+.++..+..|+.-=..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 5667899999999988877776544333322 2233445677778999999999999999999999998886532111
Q ss_pred HHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCCcccccccchhhccccc-HHHHHHHhcCCCHHHHHHHH
Q 001690 570 HLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHN-VNVFLQLIANTERETKIQFL 648 (1028)
Q Consensus 570 ~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~-v~~Lv~lL~~~~~~~~~~a~ 648 (1028)
.+.. ..+..|.++-. +.+..++-+..-+|..++.. .......++ +..+..-++.+-+..+..+.
T Consensus 404 -~Ln~-Ellr~~ar~q~--d~~~~irtntticlgki~~~-----------l~~~~R~~vL~~aftralkdpf~paR~a~v 468 (690)
T KOG1243|consen 404 -NLNG-ELLRYLARLQP--DEHGGIRTNTTICLGKIAPH-----------LAASVRKRVLASAFTRALKDPFVPARKAGV 468 (690)
T ss_pred -hhcH-HHHHHHHhhCc--cccCcccccceeeecccccc-----------cchhhhccccchhhhhhhcCCCCCchhhhh
Confidence 1111 12222322222 22233333333333333321 011112222 22333334455555666666
Q ss_pred HHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001690 649 HLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698 (1028)
Q Consensus 649 ~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls 698 (1028)
.++...+...+. ..+. ...++.++.+...++..+|..|-.++...-
T Consensus 469 ~~l~at~~~~~~--~~va--~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 469 LALAATQEYFDQ--SEVA--NKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred HHHhhcccccch--hhhh--hhccccccccccCcccchhhHHHHHHHHHH
Confidence 666655443321 1122 256677777777777888888877776544
No 412
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.25 E-value=1e+03 Score=31.84 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=50.2
Q ss_pred CchhHHHhhc-CCCHHHHHHHHHHHHHhhcCcch-HHHHhhCCcHHHHHHHhcC--CCHHHHHHHHHHH--HHHhcCCHh
Q 001690 494 YFQPFVACFN-RGSQETRALMASALRNMRLDESS-IKTLKDRQFIHNVIQMLSS--NSPVCKSACLKCI--KTLIAHSKM 567 (1028)
Q Consensus 494 ~v~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~-~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL--~nL~~~~~~ 567 (1028)
.|+.++.+-+ ..+-.+-..|...++.++..=.+ +....+.+--...++.+.+ ++.++-..++|.+ .+|+...++
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 4455555542 22334555566666666433222 1222332222333444443 3344555666654 344444444
Q ss_pred HHHHHhCCCcHHHHHHHHhccCC
Q 001690 568 VKHLLLDPATIPLLLGLIQFVRS 590 (1028)
Q Consensus 568 ~~~lv~~~g~v~~L~~lL~~~~~ 590 (1028)
-+.-|+. |+++.+.+.+.++..
T Consensus 1009 sr~eVRn-gAvqtlfri~~Shg~ 1030 (1610)
T KOG1848|consen 1009 SRAEVRN-GAVQTLFRIFNSHGS 1030 (1610)
T ss_pred chHHHhh-hHHHHHHHHHhhhcc
Confidence 4555677 999999999987653
No 413
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=35.16 E-value=1.9e+02 Score=35.38 Aligned_cols=132 Identities=13% Similarity=0.131 Sum_probs=87.8
Q ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCCCC
Q 001690 533 RQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHP 612 (1028)
Q Consensus 533 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~~~ 612 (1028)
..++|.|..-+++.+..+++.++..+...+..-+ -..++. -++|.+..+-... ....++.++..++..+..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~-~ilP~l~~l~~~t-t~~~vkvn~L~c~~~l~q----- 458 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQ-AILPRLKNLAFKT-TNLYVKVNVLPCLAGLIQ----- 458 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHH-HHHHHhhcchhcc-cchHHHHHHHHHHHHHHH-----
Confidence 3467778888888999999999999988876533 233444 5788888885443 346677788887777773
Q ss_pred cccccccchhhccccc---HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCCh
Q 001690 613 QFELHHGLQELQSEHN---VNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQP 684 (1028)
Q Consensus 613 ~~~~~~~~~~l~~~g~---v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~ 684 (1028)
.+....+ +.++..-.+..+|.+....+++..++......-...+. ...+|.++.+...+.-
T Consensus 459 ---------~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~--~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 459 ---------RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMA--ENVLPLLIPLSVAPSL 522 (700)
T ss_pred ---------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeeh--hhhhhhhhhhhhcccc
Confidence 1222223 44455555678899998888888777654432223333 3678888887776653
No 414
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.80 E-value=3.1e+02 Score=31.31 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHHhcCC-HhHHHHHhCCCcHHHHHH-HHhccCCChhHHHHHHHHHHHHHcCCCCCcccc---cc--c
Q 001690 547 SPVCKSACLKCIKTLIAHS-KMVKHLLLDPATIPLLLG-LIQFVRSDPHLKHEAAEILALMVGGCQHPQFEL---HH--G 619 (1028)
Q Consensus 547 ~~~~~~~A~~aL~nL~~~~-~~~~~lv~~~g~v~~L~~-lL~~~~~~~~l~~~a~~~L~nL~~~~~~~~~~~---~~--~ 619 (1028)
....|.+|...|..|+..- .....++. +.+..++. .-.+++.+..-++.|...+..|+.........+ +. +
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 3456788888888988652 22222222 12222222 112333335667888888888887543221100 00 1
Q ss_pred chhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHH
Q 001690 620 LQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLI 694 (1028)
Q Consensus 620 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L 694 (1028)
+..+....++|.|. -=.+..|-++..|++.+...-..-+. ..+ .+.+|.++.+|.+++..|...|+.++
T Consensus 302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l---~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL---LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH---HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH---HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 12222333334333 11145677888888888776554322 222 36899999999999999999988764
No 415
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=34.50 E-value=16 Score=35.49 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=21.4
Q ss_pred cCcccchHHHHHHHHhc----------CCCCCCCccccccccC-CcCcc
Q 001690 277 VCGHSFERKAIQEHFQR----------GGKNCPTCRQELLSLD-LMPNL 314 (1028)
Q Consensus 277 ~cght~c~~ci~~~~~~----------~~~~CP~~~~~l~~~~-l~~n~ 314 (1028)
.+||+|+ -||.. |..+||+|+..-..+. ..|+.
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v 52 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAV 52 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCee
Confidence 4789984 58763 4579999987654433 33443
No 416
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.10 E-value=1.2e+03 Score=30.32 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=58.3
Q ss_pred chhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhc---CCChhHHHHHHHHHHH
Q 001690 620 LQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLD---SDQPVVRRWAMRLIHC 696 (1028)
Q Consensus 620 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~---~~~~~v~~~A~~~L~~ 696 (1028)
.+.+...|++..++..+-...|.+|-.-++.+-.++..++........ .|.++.|++... +++......|.+++..
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS-~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTS-AGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhc-ccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 456778888999999888888999999999999999888777777777 888888876543 3344455555555555
Q ss_pred hc
Q 001690 697 IS 698 (1028)
Q Consensus 697 Ls 698 (1028)
|.
T Consensus 980 Lg 981 (2799)
T KOG1788|consen 980 LG 981 (2799)
T ss_pred Hh
Confidence 54
No 417
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.76 E-value=27 Score=24.40 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.9
Q ss_pred CCCCCCCcccc
Q 001690 294 GGKNCPTCRQE 304 (1028)
Q Consensus 294 ~~~~CP~~~~~ 304 (1028)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34579999764
No 418
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=33.11 E-value=18 Score=38.65 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=27.3
Q ss_pred cccCcCcccc-ccCceEccCcccchHHHHHHHHhcCCCCCCCccccc
Q 001690 260 SLVCPLCNEL-MEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQEL 305 (1028)
Q Consensus 260 ~~~Cpic~~~-~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l 305 (1028)
--.|--|.-- ..-=-+++|.|.||.+|-... ..+.||.|..++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHH
Confidence 3456666431 111225899999999996432 346899996554
No 419
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=33.04 E-value=71 Score=32.59 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=54.9
Q ss_pred chhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHh
Q 001690 910 VKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQK 982 (1028)
Q Consensus 910 i~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~ 982 (1028)
++.++++.-+++..++..|+..+..++.-|-... ...++.++.|..++++.++.+|..++..++.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 6788888889999999999999999987664322 2467889999999999999999999998873
No 420
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=32.53 E-value=16 Score=38.99 Aligned_cols=49 Identities=18% Similarity=0.448 Sum_probs=36.7
Q ss_pred CcccCcCcccccc-Cc-eE-ccCcccchHHHHHHHHhc----------------------CCCCCCCccccccc
Q 001690 259 ESLVCPLCNELME-DP-VA-IVCGHSFERKAIQEHFQR----------------------GGKNCPTCRQELLS 307 (1028)
Q Consensus 259 ~~~~Cpic~~~~~-dP-v~-~~cght~c~~ci~~~~~~----------------------~~~~CP~~~~~l~~ 307 (1028)
..-.|.||+-=|. .| ++ ++|-|-|-..|+.+++.. ....||+||.++..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4788999987554 45 44 699999999999888641 12469999998865
No 421
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=32.25 E-value=1.8e+02 Score=27.78 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=55.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHc
Q 001690 535 FIHNVIQMLSSNSPVCKSACLKCIKTLIAHS--KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVG 607 (1028)
Q Consensus 535 ~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~--~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~ 607 (1028)
++..|-+-|.++++.++..|+..|-.+..+. ..+..+... +.+..|..++......+.++..+..++...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~-~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK-EFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4566777788999999999999999987763 345555555 88999999998765544488888888888776
No 422
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.15 E-value=1.9e+02 Score=31.73 Aligned_cols=137 Identities=11% Similarity=0.170 Sum_probs=85.6
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHhh-cCcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCC
Q 001690 497 PFVACFNRGSQETRALMASALRNMR-LDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDP 575 (1028)
Q Consensus 497 ~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~ 575 (1028)
..+..|.+.+-+.+..++..+..|+ .+++....... .+|..+++-+++....+-..|+.++..+...-.+.-.-..+
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld- 169 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELD- 169 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3456667777778888888888885 34544443333 36778888888888888999999998886553222211111
Q ss_pred CcHHHHHHHHhccCC-ChhHHHHHHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHH
Q 001690 576 ATIPLLLGLIQFVRS-DPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLV 652 (1028)
Q Consensus 576 g~v~~L~~lL~~~~~-~~~l~~~a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~ 652 (1028)
+ .+..|+..+.. ..-+++.|..+|..+....... -+++.|...+....|.++..+...+.
T Consensus 170 ~---lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------------~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 170 D---LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------------KLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred H---HHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------------HHHHHHHHHHhhhchhhhhhhhcccc
Confidence 1 22233333322 2456788888888888744322 25677777777777877766655443
No 423
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=32.09 E-value=2.6e+02 Score=25.24 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=52.1
Q ss_pred cchHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHH
Q 001690 451 KDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASAL 517 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L 517 (1028)
.+.+..|+...+..+...+..+...|..+..++.....+.+-|++.-|-++-..-++..+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4666777777777777788899999999999999999999999998877766666666655544443
No 424
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.91 E-value=1.1e+02 Score=28.71 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=25.4
Q ss_pred CCCcccCcCccc-cccCceEccCcccchHHHHHHHHhcCCCCCCCccccccc
Q 001690 257 PIESLVCPLCNE-LMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 257 ~~~~~~Cpic~~-~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
+.++-+|-||.. -|-| .|||. |..|-. +.|..|+-....
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH~-C~YCq~-------r~CARCGGrv~l 101 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGHN-CSYCQT-------RFCARCGGRVSL 101 (169)
T ss_pred cCcCcchhhhhhccccc----ccCcc-cchhhh-------hHHHhcCCeeee
Confidence 347899999986 3445 59994 456633 347777666544
No 425
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.81 E-value=9 Score=42.21 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=20.6
Q ss_pred CCcccCcCccccccCceEccC---ccc--chHHHHHHHHhcCCCCCCCcccc
Q 001690 258 IESLVCPLCNELMEDPVAIVC---GHS--FERKAIQEHFQRGGKNCPTCRQE 304 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~~c---ght--~c~~ci~~~~~~~~~~CP~~~~~ 304 (1028)
+..-.||+|+..-.=-++..- |+. +|.-|=.+|-- ....||.|+..
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 346899999985333333333 554 59999999954 34579999764
No 426
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=31.81 E-value=27 Score=30.68 Aligned_cols=38 Identities=21% Similarity=0.579 Sum_probs=28.9
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLS 307 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~ 307 (1028)
.-.|-||..-...| ||.||..|-. ....|+.|+..+..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY-----kkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY-----KKGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhc-----ccCcccccCCeecc
Confidence 45899998855543 8999999953 34589999998744
No 427
>PLN02400 cellulose synthase
Probab=31.76 E-value=22 Score=45.33 Aligned_cols=48 Identities=19% Similarity=0.514 Sum_probs=36.6
Q ss_pred CcccCcCcccc-----ccCceEc--cCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 259 ESLVCPLCNEL-----MEDPVAI--VCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 259 ~~~~Cpic~~~-----~~dPv~~--~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
..-.|.||.+- .-+|.+. .||--.||.|-+-=-+.|+..||.|+++..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34589999874 3357663 688889999986444567889999998875
No 428
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=31.68 E-value=3.2e+02 Score=27.18 Aligned_cols=105 Identities=23% Similarity=0.283 Sum_probs=65.4
Q ss_pred cHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHHHHHHHhc--hhHHHHHhhccC---CchhHHHHHHHHh----hhch
Q 001690 372 LIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVEAG--AVRRIVKQICKG---ETMPEAIEVLSEL----TKRE 441 (1028)
Q Consensus 372 ~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~~g--~i~~lv~~L~~~---e~~~~A~~~L~~L----s~~~ 441 (1028)
.+..+.++|.+ +...|-.++..+......+ . .+.+.+.+ =+..++..|+.. ...+.++.+|..+ ...+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-S-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45567788888 8888888887777777655 2 34443422 267788888776 5566677666666 3345
Q ss_pred hhhhhhhc--ccchHHHHHHHhhcCChhhHHHHHHHHhccc
Q 001690 442 TLGEKIGN--TKDCITIMVSLLHNNNPNLSQKAHDVLQNLS 480 (1028)
Q Consensus 442 ~~~~~i~~--~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~ 480 (1028)
+..+.+.. .++.++.++.++++ ......++.+|..+-
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 65555532 24556666666654 455666666666653
No 429
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=31.22 E-value=69 Score=31.70 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=21.8
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCcccccccc
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSL 308 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~ 308 (1028)
..|.||.|..-++ | -..+ . .+..||.|+.++...
T Consensus 108 ~~Y~Cp~c~~r~t----------f-~eA~----~-~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 108 MFFICPNMCVRFT----------F-NEAM----E-LNFTCPRCGAMLDYL 141 (158)
T ss_pred CeEECCCCCcEee----------H-HHHH----H-cCCcCCCCCCEeeec
Confidence 6899998764222 2 1112 1 368899999998654
No 430
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.13 E-value=1.9e+02 Score=28.05 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=48.6
Q ss_pred hHHHHHhhhcC-CChHHHHHHHHHHHHhcCC--hhhhHHHHhhccHHH-HHHHHhc----CHHHHHHHHHHHHHHhc
Q 001690 331 RFQNAIIKINS-DDQSRRKSALEEMKNIMEL--PQYAEKAAKAGLIPK-LVEFLKD----TRLSTEAILKCLYFLAK 399 (1028)
Q Consensus 331 ~i~~~~~~L~s-~~~~~~~~al~~L~~l~~~--~~~r~~i~~~g~ip~-Lv~lL~s----~~~~~~~A~~~L~~Ls~ 399 (1028)
.+..+..++.. .++..+..|+.-|..+..| ..-+..++..+++.. |++++.. ...++...+..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 34556677874 4788888888877776633 344556777788987 8999863 34778888887776653
No 431
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=30.97 E-value=7 Score=24.88 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=5.4
Q ss_pred CCCCCCcccc
Q 001690 295 GKNCPTCRQE 304 (1028)
Q Consensus 295 ~~~CP~~~~~ 304 (1028)
...||.|+.+
T Consensus 13 ~~fC~~CG~~ 22 (23)
T PF13240_consen 13 AKFCPNCGTP 22 (23)
T ss_pred CcchhhhCCc
Confidence 3456666554
No 432
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=30.57 E-value=2.8e+02 Score=27.49 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=76.6
Q ss_pred cchHHHHHHHhhcC-ChhhHHHHHHHHhccccCchhHHHHHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHH
Q 001690 451 KDCITIMVSLLHNN-NPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKT 529 (1028)
Q Consensus 451 ~g~I~~Lv~lL~~~-~~~~~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 529 (1028)
+.-++.|.++|+++ +...+..++++|..|-.-+..+.+.+..+.= .-. -...+..... ..+.+....+ ....
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~--~~~~~~~~~~---~~l~~~~~~~-~~ee 81 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKS--SENSNDESTD---ISLPMMGISP-SSEE 81 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccc--cccccccchh---hHHhhccCCC-chHH
Confidence 45677888888865 5788889999999884444433332221110 000 0001111111 1111111111 2223
Q ss_pred HhhCCcHHHHHHHhcCCCHHH-HHHHHHHHHHHhcCC-HhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 001690 530 LKDRQFIHNVIQMLSSNSPVC-KSACLKCIKTLIAHS-KMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALM 605 (1028)
Q Consensus 530 i~~~g~i~~Lv~lL~s~~~~~-~~~A~~aL~nL~~~~-~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL 605 (1028)
..-..++..|+++|++++-.. ...++.++.++.... ..+..... -++|.++..++..+ ..+++....-|..|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~--~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCP--DSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 333447889999999776443 456788887776332 22233334 38999999998554 25556555444444
No 433
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.53 E-value=24 Score=42.62 Aligned_cols=53 Identities=26% Similarity=0.425 Sum_probs=38.1
Q ss_pred CCCCCcccCcCccccccCc--------eE--ccCcccc--------------------hHHHHHHHHhcC-------CCC
Q 001690 255 VYPIESLVCPLCNELMEDP--------VA--IVCGHSF--------------------ERKAIQEHFQRG-------GKN 297 (1028)
Q Consensus 255 ~~~~~~~~Cpic~~~~~dP--------v~--~~cght~--------------------c~~ci~~~~~~~-------~~~ 297 (1028)
..|||--.|+-|++-|.|| .+ +.||-.| |..|-.++-+.. ...
T Consensus 96 ~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~a 175 (750)
T COG0068 96 QIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIA 175 (750)
T ss_pred ccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcccccccccccc
Confidence 3477899999999888775 33 5688764 788888876532 247
Q ss_pred CCCccccccc
Q 001690 298 CPTCRQELLS 307 (1028)
Q Consensus 298 CP~~~~~l~~ 307 (1028)
||.|+-.+..
T Consensus 176 Cp~CGP~~~l 185 (750)
T COG0068 176 CPKCGPHLFL 185 (750)
T ss_pred CcccCCCeEE
Confidence 9999866543
No 434
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=30.29 E-value=1.5e+02 Score=28.52 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=55.3
Q ss_pred CcchhHHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHh-cCChh---HHHHHHHHHHHHHhh
Q 001690 908 DAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLE-KGSLS---AKTKALDLFQMIQKH 983 (1028)
Q Consensus 908 gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~---~~~~A~~~l~~~~~~ 983 (1028)
.++..|-+-|.++++.++..|+..|..+..+... .....+....-+..|..++. +.... ++++++.+|...-..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~--~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGP--RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH--HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999977532 11234555556667777776 34444 899999988877644
Q ss_pred h
Q 001690 984 T 984 (1028)
Q Consensus 984 ~ 984 (1028)
.
T Consensus 120 f 120 (140)
T PF00790_consen 120 F 120 (140)
T ss_dssp T
T ss_pred H
Confidence 3
No 435
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.63 E-value=3.9e+02 Score=27.12 Aligned_cols=109 Identities=16% Similarity=0.264 Sum_probs=67.7
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHHc-C----Cch---------------hHHHhh-cCCCHHHHH
Q 001690 453 CITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEA-G----YFQ---------------PFVACF-NRGSQETRA 511 (1028)
Q Consensus 453 ~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~~-G----~v~---------------~Lv~lL-~~~~~~~~~ 511 (1028)
..+.+.-++.+++++++..|+.+|..|-.+...--.+++. . .+- .|+..| .+.+..+..
T Consensus 41 ~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~ 120 (182)
T PF13251_consen 41 TPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLT 120 (182)
T ss_pred CcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 3344445556778888888888888876654433333331 1 111 233444 344566777
Q ss_pred HHHHHHHHhh-cCcchHHHHhhCCcHHHHHH----HhcCCCHHHHHHHHHHHHHHhcC
Q 001690 512 LMASALRNMR-LDESSIKTLKDRQFIHNVIQ----MLSSNSPVCKSACLKCIKTLIAH 564 (1028)
Q Consensus 512 ~a~~~L~~La-~~~~~~~~i~~~g~i~~Lv~----lL~s~~~~~~~~A~~aL~nL~~~ 564 (1028)
....+|..|. ..|-+|-. .|.++.++. ++.+.++.++..++.++..+...
T Consensus 121 q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 7788888884 45554443 456666554 55688889999999998887554
No 436
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=29.54 E-value=2.2e+02 Score=24.89 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcccccchhhcHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHH
Q 001690 117 LAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQ---SVAAAEAIASEIERSALQNNKNRENALELLRKIAE 191 (1028)
Q Consensus 117 ~~~~l~~~L~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~ 191 (1028)
.-..|..-|+..| .++++-++.+..+..+++++-.. ....+..+.+.+..++..+..+.......++.|.+
T Consensus 5 ~L~~L~~eL~~~~----~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i~~ 78 (85)
T PF14357_consen 5 LLEKLHQELEQNP----PLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNIMD 78 (85)
T ss_pred HHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3344444454443 34455555555555555543322 22344455555555554443333333334444443
No 437
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.54 E-value=47 Score=41.83 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=36.8
Q ss_pred CCcccCcCccccccCceEccCcc-----cchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHH
Q 001690 258 IESLVCPLCNELMEDPVAIVCGH-----SFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEE 322 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~~cgh-----t~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 322 (1028)
.....||-|.....-..--.||. .||..|- +. .+...||.|+..+.... .....++.+...
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG--~~-~~~y~CPKCG~El~~~s-~~~i~l~~~~~~ 689 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG--IE-VEEDECEKCGREPTPYS-KRKIDLKELYDR 689 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCcccc--Cc-CCCCcCCCCCCCCCccc-eEEecHHHHHHH
Confidence 36678999988753322235884 5899992 21 23468999998875432 223444444443
No 438
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=27.96 E-value=3.9e+02 Score=32.74 Aligned_cols=172 Identities=10% Similarity=0.077 Sum_probs=100.3
Q ss_pred hhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCCC
Q 001690 531 KDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQ 610 (1028)
Q Consensus 531 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~~ 610 (1028)
.+.+.+|.|++|+++.+..+|-.-+.-+-+... ..-..++.. -++|.+..-+...+ +.+++.....+..|+..=.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d-~I~phv~~G~~DTn--~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILND-QIFPHVALGFLDTN--ATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcc-hhHHHHHhhcccCC--HHHHHHHHHHHHHHHhhhc
Confidence 667789999999999998877654433333221 122344555 68888888777543 6888888888888876210
Q ss_pred CCcccccccchhhcccccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHhhhchHHHHHhhhcCCChhHHHH
Q 001690 611 HPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKS-EKVRNLIESNNDAITQLFSSLDSDQPVVRRW 689 (1028)
Q Consensus 611 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~ 689 (1028)
.+ -.....+..|..+-....+.++.+..-+|..++... +.. +. .-.+-++.+-++++-...|.+
T Consensus 402 -~~---------~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~-~vL~~aftralkdpf~paR~a 466 (690)
T KOG1243|consen 402 -KR---------NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RK-RVLASAFTRALKDPFVPARKA 466 (690)
T ss_pred -hh---------hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hc-cccchhhhhhhcCCCCCchhh
Confidence 00 011112222222222345567777777777766553 222 22 122234444555666678888
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCcccHHHHHHhccCCC
Q 001690 690 AMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSP 728 (1028)
Q Consensus 690 A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~Lv~lL~~~~ 728 (1028)
+.+.++....+.+..+++.. .++.++-+..+++
T Consensus 467 ~v~~l~at~~~~~~~~va~k------Ilp~l~pl~vd~e 499 (690)
T KOG1243|consen 467 GVLALAATQEYFDQSEVANK------ILPSLVPLTVDPE 499 (690)
T ss_pred hhHHHhhcccccchhhhhhh------ccccccccccCcc
Confidence 88888888765555554443 4555655555544
No 439
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.39 E-value=34 Score=29.52 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=11.6
Q ss_pred cchHHHHHHHHhc
Q 001690 281 SFERKAIQEHFQR 293 (1028)
Q Consensus 281 t~c~~ci~~~~~~ 293 (1028)
.|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999974
No 440
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=27.30 E-value=62 Score=29.60 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCCHHHH
Q 001690 512 LMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCK 551 (1028)
Q Consensus 512 ~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~ 551 (1028)
.....|..|+..|+--..+++.|+++.|+.||.+.+..+.
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3456677889999988889999999999999998876543
No 441
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=1.4e+03 Score=28.94 Aligned_cols=159 Identities=17% Similarity=0.120 Sum_probs=76.9
Q ss_pred chHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccHHH--------HHHhccCCCC--HHH-HHHHHH
Q 001690 670 DAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINT--------VAAIFTCSPD--VEE-RSLAAG 738 (1028)
Q Consensus 670 g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~~~i~~--------Lv~lL~~~~~--~~~-~~~a~~ 738 (1028)
..+|.++++|+++...+-..|+.++-.+---+.. .-+.. ..++.+.+ |++-++.+.. .+. ..+..+
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~-~~~~i--f~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImR 574 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN-SNAKI--FGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMR 574 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccC-ccccc--cchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHH
Confidence 4568889999999998999999888776522211 11111 22222332 2222333322 111 133334
Q ss_pred HHhcCCCCChHHHHHHH-hccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHHHHhcCCCChHHHHHHhhcCCHH
Q 001690 739 IISQLPKDDIYVDEVLC-KSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYP 817 (1028)
Q Consensus 739 ~L~nL~~~~~~~~~~l~-~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~ 817 (1028)
++.-+.. .. +- -.-.++.|.+++... ..+.....-..++=...+++.+.|...++..-. ..+...+|
T Consensus 575 ii~i~~~---~i---~p~~~~~l~~Lteiv~~v-----~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs-~~e~aL~p 642 (960)
T KOG1992|consen 575 IISILQS---AI---IPHAPELLRQLTEIVEEV-----SKNPSNPQFNHYLFESIGLLIRKTCKANPSAVS-SLEEALFP 642 (960)
T ss_pred HHHhCHH---hh---hhhhhHHHHHHHHHHHHH-----hcCCCCchhHHHHHHHHHHHHHHHhccCchHHH-HHHHHHHH
Confidence 4432211 00 00 111234455555543 112222334455666677777777544544322 23456788
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhhh
Q 001690 818 SLIRVLSTGSSLAKQRAASALADLSQ 843 (1028)
Q Consensus 818 ~Lv~lL~s~~~~vk~~Aa~aL~~ls~ 843 (1028)
.+-..|+.+-.+.--.+-..|+.+..
T Consensus 643 ~fq~Il~eDI~EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 643 VFQTILSEDIQEFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888876544443444444444443
No 442
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.74 E-value=41 Score=30.85 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=9.9
Q ss_pred CCCCCCCcccccccc
Q 001690 294 GGKNCPTCRQELLSL 308 (1028)
Q Consensus 294 ~~~~CP~~~~~l~~~ 308 (1028)
...+||.|+..+...
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 345688888766544
No 443
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=26.74 E-value=35 Score=36.37 Aligned_cols=47 Identities=23% Similarity=0.706 Sum_probs=28.5
Q ss_pred CCcccCcCccccccC-ce--------Ecc-----CcccchHHHHHHHHhcCC---------CCCCCcccccccc
Q 001690 258 IESLVCPLCNELMED-PV--------AIV-----CGHSFERKAIQEHFQRGG---------KNCPTCRQELLSL 308 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~d-Pv--------~~~-----cght~c~~ci~~~~~~~~---------~~CP~~~~~l~~~ 308 (1028)
+.-|.|++|...+.. |- .++ ||.-|-|. |+-+|+ ..||.|++-|.++
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRP----WLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRP----WLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccch----HHhhcccccccCCCCccCCcccchhcch
Confidence 567999999765431 10 123 55555554 444332 5799999988663
No 444
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.69 E-value=2.3e+02 Score=31.76 Aligned_cols=64 Identities=13% Similarity=0.275 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCcchHHHHhhCC--cHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCCHhHHHHH
Q 001690 509 TRALMASALRNMRLDESSIKTLKDRQ--FIHNVIQMLSSN---SPVCKSACLKCIKTLIAHSKMVKHLL 572 (1028)
Q Consensus 509 ~~~~a~~~L~~La~~~~~~~~i~~~g--~i~~Lv~lL~s~---~~~~~~~A~~aL~nL~~~~~~~~~lv 572 (1028)
++..|...|..+...+.....+...+ .+.-|+++++.+ ...++..|+.+|..|+.+..-...++
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45566666666666667777777766 899999999854 36789999999999998764444444
No 445
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.35 E-value=2.1e+02 Score=24.97 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=49.4
Q ss_pred hcCcchhHHhhhc-CCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHh----cCChhHHHHHHHHHHH
Q 001690 906 KADAVKPLVRNLN-DMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLE----KGSLSAKTKALDLFQM 979 (1028)
Q Consensus 906 ~~gai~~Lv~lL~-~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~----~~~~~~~~~A~~~l~~ 979 (1028)
+...+.|+..++. ..+.++++..+.++..++.... ..| ..|.+.+.+++. .+++.+-..|...++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~------~~i--~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG------ENI--KSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH------HHH--HhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 3456899999865 6788999999999999985421 233 246888888887 5678888888887764
No 446
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=26.16 E-value=8.3e+02 Score=26.17 Aligned_cols=131 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred cHHHHHHHhc-----------CCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccC------CChhHHHH
Q 001690 535 FIHNVIQMLS-----------SNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVR------SDPHLKHE 597 (1028)
Q Consensus 535 ~i~~Lv~lL~-----------s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~------~~~~l~~~ 597 (1028)
.+|.|+++|. +++....-+|+..|..+-.. -++++++++++.+. -+.-+.+.
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~-----------~A~~~li~l~~~~~~~~~~l~GD~~tE~ 100 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE-----------RALPPLIRLFSQDDDFLEDLFGDFITED 100 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh-----------hhHHHHHHHHcCCcchHHHHHcchhHhH
Q ss_pred HHHHHHHHHcCCCCCcccccccchhhcccccHHHHHHHhcCCCHH--HHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHH
Q 001690 598 AAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERE--TKIQFLHLLVKLCYKSEKVRNLIESNNDAITQL 675 (1028)
Q Consensus 598 a~~~L~nL~~~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~--~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~L 675 (1028)
...+|+.++. |-+..|..++.+++.. +|..|+++|..+....+.-|..+.+ ---..+
T Consensus 101 l~~ilasv~~-------------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll 159 (249)
T PF06685_consen 101 LPRILASVGD-------------------GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELL 159 (249)
T ss_pred HHHHHHHHhC-------------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHH
Q ss_pred HhhhcCCChhHHHHHHHHHHHh
Q 001690 676 FSSLDSDQPVVRRWAMRLIHCI 697 (1028)
Q Consensus 676 v~Ll~~~~~~v~~~A~~~L~~L 697 (1028)
-..+......+--.=+..+..|
T Consensus 160 ~~~l~~~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 160 NYFLERNPSFLWGSLVADICDL 181 (249)
T ss_pred HHHhccCchHHHHHHHHHHHhc
No 447
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=26.09 E-value=2.3e+02 Score=28.02 Aligned_cols=138 Identities=11% Similarity=0.115 Sum_probs=70.4
Q ss_pred hhHHHHHhhccC---CchhHHHHHHHHhhhchhhhhhhhcccchHHHHHHHhhcCChhhHHHHHHHHhccc-cCchhHHH
Q 001690 413 AVRRIVKQICKG---ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLS-HNTHFAVK 488 (1028)
Q Consensus 413 ~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~a~~~L~nL~-~~~~n~~~ 488 (1028)
-++.+.++|+.+ ..|+.++.+|..|..-|-++-+... +..+.-. -.+.+........ ...+.+ ..++....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~--~~~~~~~~~~~~l-~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKS--SENSNDESTDISL-PMMGISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCccc--cccccccchhhHH-hhccCCCchHHHHHH
Confidence 345566667666 6788888888888554433333211 1111000 0011111111111 111221 22333333
Q ss_pred HHHcCCchhHHHhhcCCCHH-HHHHHHHHHHHhhc--CcchHHHHhhCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001690 489 MAEAGYFQPFVACFNRGSQE-TRALMASALRNMRL--DESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTL 561 (1028)
Q Consensus 489 i~~~G~v~~Lv~lL~~~~~~-~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL 561 (1028)
+ ++..|++.|++.+-. -...++.++.++.. ...+...+ .-++|.++..+++.+...++.-..-|..|
T Consensus 86 v----vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 86 V----VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred H----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3 567788888766543 33345566666632 22332222 23789999999977777787776666554
No 448
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=25.54 E-value=9e+02 Score=27.06 Aligned_cols=215 Identities=14% Similarity=0.080 Sum_probs=103.0
Q ss_pred HHHHHHHHhccccCchhHHHHHHcCCchhHHHhh-cCCCHHHHHHHHHHHHHhhcCcchHHHHhhCCcHHHHHHHhcCCC
Q 001690 469 SQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACF-NRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNS 547 (1028)
Q Consensus 469 ~~~a~~~L~nL~~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~s~~ 547 (1028)
+...+.+|..+.. .. +...++..|+.++ ++.++.....++.+|..=...- ..-....++..+.+-|.+..
T Consensus 4 r~~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk 74 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKK 74 (339)
T ss_pred HHHHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCC
Confidence 3344566666655 22 2223455566666 5677776666666665421100 00011223444555555666
Q ss_pred HHHHHHHHHHHHHHhcC--CHhHHHHHhCCCcHHHHHHHHhccCCC--hh----HHHHHHHHHHHHHcCCCCCccccccc
Q 001690 548 PVCKSACLKCIKTLIAH--SKMVKHLLLDPATIPLLLGLIQFVRSD--PH----LKHEAAEILALMVGGCQHPQFELHHG 619 (1028)
Q Consensus 548 ~~~~~~A~~aL~nL~~~--~~~~~~lv~~~g~v~~L~~lL~~~~~~--~~----l~~~a~~~L~nL~~~~~~~~~~~~~~ 619 (1028)
+.+|+.-+..++.+... .......+. ..+|.|+..+...... .. .-..+..++. +.....+.-......
T Consensus 75 ~~vR~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 75 PPVRRAWLLCLGEALWESPNSDSLKFAE--PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNIS 151 (339)
T ss_pred CcHHHHHHHHHHHHHhhccCchHHHHHH--HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhh
Confidence 66787777777666541 122333444 4888888888643211 11 0112222222 111110000000000
Q ss_pred chhhcccccHHHHH---HHhcC-CCHHHHHHHHHHHHHhhcCCHHH-HHHHHhhhchHHHHHhhhcCC--ChhHHHHHHH
Q 001690 620 LQELQSEHNVNVFL---QLIAN-TERETKIQFLHLLVKLCYKSEKV-RNLIESNNDAITQLFSSLDSD--QPVVRRWAMR 692 (1028)
Q Consensus 620 ~~~l~~~g~v~~Lv---~lL~~-~~~~~~~~a~~aL~~L~~~~~~~-~~~i~~~~g~v~~Lv~Ll~~~--~~~v~~~A~~ 692 (1028)
...+. .+--+.++ .+... .+++.....++++..+..+.... .... . ..--+.++.++-+. ...+|+.|..
T Consensus 152 ~~~l~-~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~-~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 152 FWSLA-LDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-S-SAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhc-cCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-H-HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 00000 00011111 22222 56667777888887776654211 1111 1 13445677877777 6799999999
Q ss_pred HHHHhc
Q 001690 693 LIHCIS 698 (1028)
Q Consensus 693 ~L~~Ls 698 (1028)
++..+.
T Consensus 229 ~l~~l~ 234 (339)
T PF12074_consen 229 ALKKLY 234 (339)
T ss_pred HHHHHH
Confidence 999887
No 449
>PF12773 DZR: Double zinc ribbon
Probab=25.41 E-value=45 Score=25.57 Aligned_cols=11 Identities=45% Similarity=0.902 Sum_probs=6.8
Q ss_pred CCCCCCccccc
Q 001690 295 GKNCPTCRQEL 305 (1028)
Q Consensus 295 ~~~CP~~~~~l 305 (1028)
...||.|+..+
T Consensus 29 ~~~C~~Cg~~~ 39 (50)
T PF12773_consen 29 KKICPNCGAEN 39 (50)
T ss_pred CCCCcCCcCCC
Confidence 35677776654
No 450
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=25.32 E-value=60 Score=21.35 Aligned_cols=13 Identities=38% Similarity=0.273 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhh
Q 001690 924 VAEAALTALETLL 936 (1028)
Q Consensus 924 v~~~A~~aL~~L~ 936 (1028)
||..|+++|+.+-
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 6788999999887
No 451
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=72 Score=35.55 Aligned_cols=47 Identities=28% Similarity=0.575 Sum_probs=36.4
Q ss_pred ccCcCccccccCc----eEccCcccchHHHHHHHHhcCCCCCCCcccccccc
Q 001690 261 LVCPLCNELMEDP----VAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSL 308 (1028)
Q Consensus 261 ~~Cpic~~~~~dP----v~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~ 308 (1028)
-.|.||.+-++.- -.+.|||.|-..|+.+|+.. ...||.|+..+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhh
Confidence 4678887766533 23689999999999999985 66799998887653
No 452
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=25.21 E-value=55 Score=29.74 Aligned_cols=51 Identities=22% Similarity=0.434 Sum_probs=30.2
Q ss_pred CCCcccCcCccccccCceEc-cCc-----ccchHHHHHHHHhcCCCCCCCcccccccc
Q 001690 257 PIESLVCPLCNELMEDPVAI-VCG-----HSFERKAIQEHFQRGGKNCPTCRQELLSL 308 (1028)
Q Consensus 257 ~~~~~~Cpic~~~~~dPv~~-~cg-----ht~c~~ci~~~~~~~~~~CP~~~~~l~~~ 308 (1028)
+++.++|||++++-.+-|.+ ..+ .-|+...+.+....+ ..=|.+|.+++..
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~s 93 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPS 93 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChh
Confidence 56889999999999888875 233 358999999998754 3457888877653
No 453
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.11 E-value=19 Score=39.56 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=30.0
Q ss_pred CcccCcCccccccCceEc----cCccc--chHHHHHHHHhcCCCCCCCcccc
Q 001690 259 ESLVCPLCNELMEDPVAI----VCGHS--FERKAIQEHFQRGGKNCPTCRQE 304 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~----~cght--~c~~ci~~~~~~~~~~CP~~~~~ 304 (1028)
..-.||+|...-.--++. .-|+. +|.-|=.+|-- ....||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 356999999743222222 24644 49999999954 35679999864
No 454
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.89 E-value=14 Score=27.51 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=14.0
Q ss_pred cCcccchHHHHHHHHhcCCCCCCCccc
Q 001690 277 VCGHSFERKAIQEHFQRGGKNCPTCRQ 303 (1028)
Q Consensus 277 ~cght~c~~ci~~~~~~~~~~CP~~~~ 303 (1028)
.|||.|+... ..-+.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQ--SISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEE--EcCCCCCCcCCCCCC
Confidence 4666664421 111223568999987
No 455
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.76 E-value=1.7e+02 Score=27.13 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=34.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhC
Q 001690 535 FIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLD 574 (1028)
Q Consensus 535 ~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~ 574 (1028)
+|+.|+.-|.++++++...|+.+|...|.++.....++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5889999999999999999999999999988666666554
No 456
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.68 E-value=2.5e+02 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=32.9
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHhccccCchhHHHHHH
Q 001690 453 CITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAE 491 (1028)
Q Consensus 453 ~I~~Lv~lL~~~~~~~~~~a~~~L~nL~~~~~n~~~i~~ 491 (1028)
+|+.||.-|.+.++++...|..+|...|..+.+...++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 688999999999999999999999999888765555554
No 457
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=24.44 E-value=45 Score=32.58 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=22.4
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHh-cCCCCCCCcccccccc
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQ-RGGKNCPTCRQELLSL 308 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~-~~~~~CP~~~~~l~~~ 308 (1028)
..|.||-|...+. -.=.....+ .+...||.|+..+...
T Consensus 98 ~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 98 AYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred cEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 6899996654333 211222211 2447899999998653
No 458
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.35 E-value=5.7e+02 Score=25.96 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=48.0
Q ss_pred CchhHHHhhcCCCHHHHHHHHHHHHHhhcCcchHHHHh--hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH
Q 001690 494 YFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLK--DRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSK 566 (1028)
Q Consensus 494 ~v~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~i~--~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~ 566 (1028)
.+|.+++-|.+.....+.-|......|-.. .+...|. =...|++|-..|.+.++++...++.+|..|....+
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 456666666655555666666666666333 2222232 24467777788889999999999999999965543
No 459
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.27 E-value=1e+03 Score=26.52 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=23.3
Q ss_pred HhchhhhHHHHhhhhHHHHHHHHHHHHHHHHhhc
Q 001690 94 DYKSRSRLRLLLQSNSVLSRMQHLAREIAITISS 127 (1028)
Q Consensus 94 ~c~~~Sklyll~~~~~~~~~~~~~~~~l~~~L~~ 127 (1028)
.....|.=|...-++.....|+....++....+.
T Consensus 190 ~yq~a~~ey~~~~~~~~~ks~e~~~~~l~~~~~~ 223 (320)
T TIGR01834 190 EYQQAMADYQLLEADIGYKSFAALMSDLLARAKS 223 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3334456677777788888888888887765553
No 460
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.15 E-value=30 Score=24.43 Aligned_cols=10 Identities=30% Similarity=0.956 Sum_probs=7.6
Q ss_pred CCCCCCcccc
Q 001690 295 GKNCPTCRQE 304 (1028)
Q Consensus 295 ~~~CP~~~~~ 304 (1028)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999875
No 461
>PF04641 Rtf2: Rtf2 RING-finger
Probab=24.06 E-value=78 Score=34.21 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=32.6
Q ss_pred CcccCcCccccccCceEc-cCcccchHHHHHHHHhcCC
Q 001690 259 ESLVCPLCNELMEDPVAI-VCGHSFERKAIQEHFQRGG 295 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~-~cght~c~~ci~~~~~~~~ 295 (1028)
....|+++++.+.+||+. .-|+-|-+..|-+|+....
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~ 70 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKK 70 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcC
Confidence 578999999999999864 7899999999999997543
No 462
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=23.99 E-value=1.2e+02 Score=33.42 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=48.2
Q ss_pred hcCcchhHHhhhcCCCccHHHHHHHHHHHhhhccc-----------chhhHHHHHHhccchHHHHHHHh
Q 001690 906 KADAVKPLVRNLNDMESGVAEAALTALETLLADHS-----------TLSHAIAVIVDSQGVLAILQVLE 963 (1028)
Q Consensus 906 ~~gai~~Lv~lL~~~d~~v~~~A~~aL~~L~~d~~-----------~~~~~~~~i~~~~~i~~l~~ll~ 963 (1028)
+...|..+++-|++.+...+..|+.+|..++...- ....++..+.+.||+++|.+++.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34568899999999999999999999999975421 13466889999999999999998
No 463
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.68 E-value=1.7e+02 Score=29.85 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=51.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCC
Q 001690 628 NVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEG 700 (1028)
Q Consensus 628 ~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~ 700 (1028)
.++.++++..++++.++..|+..+.-+.... +......+|.|+.|..++++.++..|..++..+.+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3556677777888999998888887665432 111146789999999999999999999999999843
No 464
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.36 E-value=41 Score=36.59 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=16.5
Q ss_pred cccCcCcccccc--C-ceEccCcccchH
Q 001690 260 SLVCPLCNELME--D-PVAIVCGHSFER 284 (1028)
Q Consensus 260 ~~~Cpic~~~~~--d-Pv~~~cght~c~ 284 (1028)
.|.||+|...|. + .+.-+.||+|+.
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 489999999775 2 223356777743
No 465
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=23.31 E-value=2.1e+03 Score=29.79 Aligned_cols=146 Identities=16% Similarity=0.239 Sum_probs=79.7
Q ss_pred CcHHHHHH----HhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHhCCCcHHHHHHHHhccCCChhHHHHHHHHHHHHHcCC
Q 001690 534 QFIHNVIQ----MLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGC 609 (1028)
Q Consensus 534 g~i~~Lv~----lL~s~~~~~~~~A~~aL~nL~~~~~~~~~lv~~~g~v~~L~~lL~~~~~~~~l~~~a~~~L~nL~~~~ 609 (1028)
..++.++. +|++.++.+++-+......+-..-+. ..+. .++..|+..+.++.+ .-...|..+|..|+...
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qq-eVv~~Lvthi~sg~~--~ev~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQ-EVVGALVTHIGSGNS--QEVDAALDVLCELAEKN 504 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHH-HHHHHHHHHHHH--H--HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHH-HHHHHHHHHHcCCcH--HHHHHHHHHHHHHHhcc
Confidence 45666665 45688899888887777776444321 1112 367778888876653 23468888999998732
Q ss_pred CCCcccccccchhhcc-cccHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHH-hhhcCCChhHH
Q 001690 610 QHPQFELHHGLQELQS-EHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLF-SSLDSDQPVVR 687 (1028)
Q Consensus 610 ~~~~~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv-~Ll~~~~~~v~ 687 (1028)
. ..+.. ...+..+++.+..=++.-...+..+|..|+......-..+.. -+.-++ ..|.+.+...+
T Consensus 505 ~----------~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~d---el~ivIRKQLss~~~~~K 571 (1426)
T PF14631_consen 505 P----------SELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQD---ELHIVIRKQLSSSNPKYK 571 (1426)
T ss_dssp H----------HHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHH---HHHHHHHHHHT-SSHHHH
T ss_pred H----------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHH---HHHHHHHHhhcCCcHHHH
Confidence 1 11111 234555666666666666667777777777533111112222 233333 36666666443
Q ss_pred H----HHHHHHHHhc
Q 001690 688 R----WAMRLIHCIS 698 (1028)
Q Consensus 688 ~----~A~~~L~~Ls 698 (1028)
. .|+..+..++
T Consensus 572 ~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 572 RIGIIGAVMMIKHLA 586 (1426)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHH
Confidence 3 4555666665
No 466
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.28 E-value=4.6e+02 Score=28.28 Aligned_cols=21 Identities=5% Similarity=-0.171 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001690 73 FTKAALETLGAQLREAHNIID 93 (1028)
Q Consensus 73 ~~~~~l~~L~~~l~~ak~Ll~ 93 (1028)
.+..|=-++.+++-..|-.+.
T Consensus 199 Da~eW~lEvERVlPQLKVt~k 219 (384)
T KOG0972|consen 199 DAIEWKLEVERVLPQLKVTLK 219 (384)
T ss_pred hHHHHHHHHHHhhhhheehhc
Confidence 556676677777766555543
No 467
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=23.25 E-value=48 Score=32.88 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=8.2
Q ss_pred CCCCCCCcccc
Q 001690 294 GGKNCPTCRQE 304 (1028)
Q Consensus 294 ~~~~CP~~~~~ 304 (1028)
....||.|+.+
T Consensus 148 ~P~~CPiCga~ 158 (166)
T COG1592 148 APEVCPICGAP 158 (166)
T ss_pred CCCcCCCCCCh
Confidence 45679999865
No 468
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=23.20 E-value=51 Score=40.59 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=42.6
Q ss_pred CcccCcCccccccCceE-ccCcccchHHHHHHHHh-----cCCCCCCCccccccccCCcCccchhhhHH
Q 001690 259 ESLVCPLCNELMEDPVA-IVCGHSFERKAIQEHFQ-----RGGKNCPTCRQELLSLDLMPNLSLRSSIE 321 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~-~~cght~c~~ci~~~~~-----~~~~~CP~~~~~l~~~~l~~n~~l~~~i~ 321 (1028)
-.+.|||++.-|+-|.. ..|+|-=|-... |+. +..+.||+|.+......++-...+...+.
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchh--hhHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 47999999999998886 689985555443 322 23478999988877777765555444443
No 469
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=23.04 E-value=31 Score=37.98 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=23.3
Q ss_pred CcccCcCcccc-ccCceEccCcccchHHHHH
Q 001690 259 ESLVCPLCNEL-MEDPVAIVCGHSFERKAIQ 288 (1028)
Q Consensus 259 ~~~~Cpic~~~-~~dPv~~~cght~c~~ci~ 288 (1028)
..+.|.-|... ...-..++||.-|||.|+.
T Consensus 38 gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 38 GKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred CcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 57899999853 3334568999999999985
No 470
>PRK00420 hypothetical protein; Validated
Probab=22.87 E-value=42 Score=30.90 Aligned_cols=29 Identities=24% Similarity=0.567 Sum_probs=18.3
Q ss_pred cccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 260 ~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
...||.|.-.+.. +. .|...||.|+..+.
T Consensus 23 ~~~CP~Cg~pLf~---lk---------------~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 23 SKHCPVCGLPLFE---LK---------------DGEVVCPVHGKVYI 51 (112)
T ss_pred cCCCCCCCCccee---cC---------------CCceECCCCCCeee
Confidence 4789998754332 12 34556999988654
No 471
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=23 Score=39.07 Aligned_cols=45 Identities=22% Similarity=0.673 Sum_probs=33.1
Q ss_pred cccCcCcccccc------CceEcc--------CcccchHHHHHHHHhcCCCCCCCcccc
Q 001690 260 SLVCPLCNELME------DPVAIV--------CGHSFERKAIQEHFQRGGKNCPTCRQE 304 (1028)
Q Consensus 260 ~~~Cpic~~~~~------dPv~~~--------cght~c~~ci~~~~~~~~~~CP~~~~~ 304 (1028)
+-.|.||...+. -|-+.. ||||+|..|+..-.......||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 455666654433 355556 999999999999877656899999764
No 472
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=22.75 E-value=50 Score=26.37 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=19.6
Q ss_pred CcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccc
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQ 303 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~ 303 (1028)
-.|-||-|.+.+- .-|..|=+ ......||.|+.
T Consensus 26 v~F~CPnCGe~~I---------~Rc~~CRk---~g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCPNCGEVEI---------YRCAKCRK---LGNPYRCPKCGF 58 (61)
T ss_pred eEeeCCCCCceee---------ehhhhHHH---cCCceECCCcCc
Confidence 4688888886432 12444422 123478999975
No 473
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=22.14 E-value=6.2e+02 Score=31.41 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhcccccchhhcHHHHHHHHHHH
Q 001690 113 RMQHLAREIAITISSFQLVNLEIALNLKAMTDQIV 147 (1028)
Q Consensus 113 ~~~~~~~~l~~~L~~~p~~~l~~~~~~~~~~~~~~ 147 (1028)
.++++..+++.+.+.+|.... +.++.-.|.+..
T Consensus 357 E~qRLitEvE~cislLPav~g--~tniq~EIALA~ 389 (861)
T PF15254_consen 357 EVQRLITEVEACISLLPAVSG--STNIQVEIALAM 389 (861)
T ss_pred HHHHHHHHHHHHHHhhhhhhc--cccchhhhHhhh
Confidence 456677777777777774432 333334444443
No 474
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.05 E-value=38 Score=39.02 Aligned_cols=65 Identities=35% Similarity=0.561 Sum_probs=44.0
Q ss_pred CCCCCCcccCcCc-cccccCceEc--cCcccchHHHHHHHHhcCCCCCCCccccc-cccCCcCccchhhhH
Q 001690 254 QVYPIESLVCPLC-NELMEDPVAI--VCGHSFERKAIQEHFQRGGKNCPTCRQEL-LSLDLMPNLSLRSSI 320 (1028)
Q Consensus 254 ~~~~~~~~~Cpic-~~~~~dPv~~--~cght~c~~ci~~~~~~~~~~CP~~~~~l-~~~~l~~n~~l~~~i 320 (1028)
....++.+.|++| .+.|.+-+++ .|+.+||..||.+.+- ...||.|...- ....+.++..++..+
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~--~~~~~~c~~~~~~~~~~~~p~~~r~~~ 281 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALI--SKSMCVCGASNVLADDLLPPKTLRDTI 281 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCccccccccc--cccCCcchhhcccccccCCchhhHHHH
Confidence 3455689999999 8899988876 6999999999988764 23455554432 223455554444433
No 475
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=21.64 E-value=88 Score=28.22 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=32.1
Q ss_pred CCCCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccCCcCccchhhhHHHHHHh
Q 001690 256 YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQR 326 (1028)
Q Consensus 256 ~~~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 326 (1028)
.+|..|.||.|.+ ..-||.+ ++ ..++..||.|+..... .+.+-..--.....|...
T Consensus 17 klpt~f~CP~Cge-~~v~v~~--~k-----------~~~h~~C~~CG~y~~~-~V~~l~epIDVY~~wiD~ 72 (99)
T PRK14892 17 KLPKIFECPRCGK-VSISVKI--KK-----------NIAIITCGNCGLYTEF-EVPSVYDEVDVYNKFIDL 72 (99)
T ss_pred CCCcEeECCCCCC-eEeeeec--CC-----------CcceEECCCCCCccCE-ECCccccchhhHHHHHHH
Confidence 3468999999995 2333322 22 1367889999876533 333322333455666554
No 476
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.56 E-value=34 Score=37.71 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=30.6
Q ss_pred CcccCcCccccccCceE-c--cCcccc--hHHHHHHHHhcCCCCCCCccc
Q 001690 259 ESLVCPLCNELMEDPVA-I--VCGHSF--ERKAIQEHFQRGGKNCPTCRQ 303 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~-~--~cght~--c~~ci~~~~~~~~~~CP~~~~ 303 (1028)
..-.||+|...-.--|+ . .-|+.| |.-|=.+|-- ....||.|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 46899999975322232 1 356555 9999999964 3567999986
No 477
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=21.52 E-value=1.3e+02 Score=29.57 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHhhhHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001690 48 RTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYK 96 (1028)
Q Consensus 48 r~i~~l~~lleel~~~~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 96 (1028)
-+...|+.++||+...-.+-.. -...+.|.|...+..||.|++.|-
T Consensus 135 ~kY~~LL~vieEmgkeirpTya---gsks~~ERLKr~I~hAR~lVRecl 180 (189)
T KOG4713|consen 135 TKYADLLSVIEEMGKEIRPTYA---GSKSAMERLKRDIIHARLLVRECL 180 (189)
T ss_pred hHHHHHHHHHHHHhcccCcccc---ccccHHHHHHhhHHHHHHHHHHHH
Confidence 3445677888999654433333 446778999999999999999996
No 478
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=21.47 E-value=9.9e+02 Score=25.38 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHhhccCccccccccHHHHHHHHhhhHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHH
Q 001690 14 VLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIID 93 (1028)
Q Consensus 14 ~~~~l~~~l~~~~~~i~~~~~~~~~~k~~~~~l~r~i~~l~~lleel~~~~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~ 93 (1028)
.-.|||++|++++.=+.....+. ..+.+...++..+=-+..++=-=-|.=.|.|.+-+.+.--+-+-+.++.+-++...
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l-~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~ 136 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDL-KDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYL 136 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhh-hcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHh
Confidence 56899999999999887655554 33566667776666666665433444455554334444445555667777777666
Q ss_pred Hhc
Q 001690 94 DYK 96 (1028)
Q Consensus 94 ~c~ 96 (1028)
..+
T Consensus 137 ~~~ 139 (237)
T PF08427_consen 137 RSS 139 (237)
T ss_pred hcc
Confidence 665
No 479
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=51 Score=34.56 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=34.0
Q ss_pred CCcccCcCccccccCc----eEccCc-----ccchHHHHHHHHhcCC-------CCCCCccccc
Q 001690 258 IESLVCPLCNELMEDP----VAIVCG-----HSFERKAIQEHFQRGG-------KNCPTCRQEL 305 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dP----v~~~cg-----ht~c~~ci~~~~~~~~-------~~CP~~~~~l 305 (1028)
..+-.|=||+.-=.|- .+-||- |-....|+.+|+++.+ .+||.|+...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 4688999999765542 223553 4567899999998532 4799998765
No 480
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=21.09 E-value=26 Score=31.18 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=22.1
Q ss_pred CCcccCcCccccccCceEc--cCcccchHHH
Q 001690 258 IESLVCPLCNELMEDPVAI--VCGHSFERKA 286 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~--~cght~c~~c 286 (1028)
.++|+|.-|+=+...--+- .-|+.||+.|
T Consensus 68 ~DEFTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 68 ADEFTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred CCceeeeeeeeEechhhhccccCCCEecccc
Confidence 3899999999877655442 3489999988
No 481
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=80 Score=34.92 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHHHHHhc-CChhhhHHHHhhccHHHHHHHH--hc-CHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 001690 351 LEEMKNIM-ELPQYAEKAAKAGLIPKLVEFL--KD-TRLSTEAILKCLYFLAKYSDIHKEAIVE 410 (1028)
Q Consensus 351 l~~L~~l~-~~~~~r~~i~~~g~ip~Lv~lL--~s-~~~~~~~A~~~L~~Ls~~~~~~k~~i~~ 410 (1028)
.+-|..+| ..+++++.+.+-|+++.++.-- +. ++.+++..+-++++|..++.+|++.|.+
T Consensus 377 ir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 377 IRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 34677899 9999999999999999987643 33 8999999999999999999888888865
No 482
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=21.03 E-value=71 Score=38.95 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=38.7
Q ss_pred CcccCcCcc--ccccCceEccCccc-----chHHHHHHHHhcC-CCCCCCcccccccc
Q 001690 259 ESLVCPLCN--ELMEDPVAIVCGHS-----FERKAIQEHFQRG-GKNCPTCRQELLSL 308 (1028)
Q Consensus 259 ~~~~Cpic~--~~~~dPv~~~cght-----~c~~ci~~~~~~~-~~~CP~~~~~l~~~ 308 (1028)
++-.|-||. +.-.||..-||..+ -.++|+.+|...+ ...|-.|..++.-+
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 678999996 45678888888653 3799999999854 46899998877654
No 483
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=21.03 E-value=76 Score=34.88 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=32.8
Q ss_pred ccCcCcccccc--C-ceE-ccCcccchHHHHHHHHhcCCCCCCCcccccc
Q 001690 261 LVCPLCNELME--D-PVA-IVCGHSFERKAIQEHFQRGGKNCPTCRQELL 306 (1028)
Q Consensus 261 ~~Cpic~~~~~--d-Pv~-~~cght~c~~ci~~~~~~~~~~CP~~~~~l~ 306 (1028)
-.||||.+.+. | +++ .+||+..|..|...... ++..||.|+.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccc
Confidence 57999999762 2 222 47888888888776654 6789999996654
No 484
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.85 E-value=1.2e+02 Score=30.54 Aligned_cols=36 Identities=33% Similarity=0.670 Sum_probs=24.6
Q ss_pred CCcccCcCccccccCceEccCcccchHHHHHHHHhcCCCCCCCccccccccC
Q 001690 258 IESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLD 309 (1028)
Q Consensus 258 ~~~~~Cpic~~~~~dPv~~~cght~c~~ci~~~~~~~~~~CP~~~~~l~~~~ 309 (1028)
...|.||.|.--+ ||...+- -..+||.|+..+...+
T Consensus 111 ~~~y~C~~~~~r~----------sfdeA~~------~~F~Cp~Cg~~L~~~d 146 (176)
T COG1675 111 NNYYVCPNCHVKY----------SFDEAME------LGFTCPKCGEDLEEYD 146 (176)
T ss_pred CCceeCCCCCCcc----------cHHHHHH------hCCCCCCCCchhhhcc
Confidence 3689999887533 3555443 2378999999886544
No 485
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.84 E-value=6.5e+02 Score=27.48 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=47.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHh-HHHHHhCCCcHHHHHHHHhcc-------CC---ChhHHHHHHHHHH
Q 001690 535 FIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKM-VKHLLLDPATIPLLLGLIQFV-------RS---DPHLKHEAAEILA 603 (1028)
Q Consensus 535 ~i~~Lv~lL~s~~~~~~~~A~~aL~nL~~~~~~-~~~lv~~~g~v~~L~~lL~~~-------~~---~~~l~~~a~~~L~ 603 (1028)
++|+++.++++.++..|..++.+|..+...... ....++..|..+.+.+.+... ++ ...+-..+-.+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 689999999999999999999999999765322 223333336544444444321 11 1345566667777
Q ss_pred HHHc
Q 001690 604 LMVG 607 (1028)
Q Consensus 604 nL~~ 607 (1028)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7755
No 486
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=20.62 E-value=63 Score=39.77 Aligned_cols=46 Identities=28% Similarity=0.652 Sum_probs=36.0
Q ss_pred CcccCcCcccccc--CceE--ccCcccchHHHHHHHHhc------CCCCCCCcccc
Q 001690 259 ESLVCPLCNELME--DPVA--IVCGHSFERKAIQEHFQR------GGKNCPTCRQE 304 (1028)
Q Consensus 259 ~~~~Cpic~~~~~--dPv~--~~cght~c~~ci~~~~~~------~~~~CP~~~~~ 304 (1028)
..+.|-||.+.++ +|+- ..|-|.|.-.||.+|-+. ..+.||.|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 5789999999875 5653 368899999999999863 23689999843
No 487
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=20.62 E-value=19 Score=23.57 Aligned_cols=10 Identities=40% Similarity=1.056 Sum_probs=5.4
Q ss_pred CCCCCCcccc
Q 001690 295 GKNCPTCRQE 304 (1028)
Q Consensus 295 ~~~CP~~~~~ 304 (1028)
...||.|+++
T Consensus 16 ~~fC~~CG~~ 25 (26)
T PF13248_consen 16 AKFCPNCGAK 25 (26)
T ss_pred cccChhhCCC
Confidence 3456666554
No 488
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=20.60 E-value=45 Score=29.66 Aligned_cols=24 Identities=29% Similarity=0.808 Sum_probs=15.7
Q ss_pred ccCcccchHHHHHHHHhcCCCCCCCcccc
Q 001690 276 IVCGHSFERKAIQEHFQRGGKNCPTCRQE 304 (1028)
Q Consensus 276 ~~cght~c~~ci~~~~~~~~~~CP~~~~~ 304 (1028)
+.|||.|.... +..+. -||.|+-.
T Consensus 6 trCG~vf~~g~-~~il~----GCp~CG~n 29 (112)
T COG3364 6 TRCGEVFDDGS-EEILS----GCPKCGCN 29 (112)
T ss_pred ccccccccccc-HHHHc----cCccccch
Confidence 67999987652 23332 39999754
No 489
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=20.57 E-value=4.3e+02 Score=21.71 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 001690 159 AAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQ 211 (1028)
Q Consensus 159 ~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~e~~~l~~ 211 (1028)
..+.++.+-|.+.+.++...+ .+..|++.+|+.|. .....-++.|++
T Consensus 6 ~rQ~~vL~~I~~~~~~~G~~P-----t~rEIa~~~g~~S~-~tv~~~L~~Le~ 52 (65)
T PF01726_consen 6 ERQKEVLEFIREYIEENGYPP-----TVREIAEALGLKST-STVQRHLKALER 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSS--------HHHHHHHHTSSSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC-----CHHHHHHHhCCCCh-HHHHHHHHHHHH
Confidence 344566666666666665543 57889999999973 556666666653
No 490
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.28 E-value=30 Score=36.13 Aligned_cols=52 Identities=15% Similarity=0.384 Sum_probs=29.2
Q ss_pred CcccCcCccccccCceEccCcccchHH--HHHHHHhcCC------CCCCCccccccccCC
Q 001690 259 ESLVCPLCNELMEDPVAIVCGHSFERK--AIQEHFQRGG------KNCPTCRQELLSLDL 310 (1028)
Q Consensus 259 ~~~~Cpic~~~~~dPv~~~cght~c~~--ci~~~~~~~~------~~CP~~~~~l~~~~l 310 (1028)
....||+|...|+-.-+.+.+-+.-+. =...++..-+ .+||.|+-.....++
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F 63 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDF 63 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccccc
Confidence 478999999998876554433222100 0001111111 479999987766554
No 491
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=61 Score=34.85 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=12.0
Q ss_pred cCcccchHHHHHHH
Q 001690 277 VCGHSFERKAIQEH 290 (1028)
Q Consensus 277 ~cght~c~~ci~~~ 290 (1028)
.||..|||.|.+.+
T Consensus 341 gCgf~FCR~C~e~y 354 (446)
T KOG0006|consen 341 GCGFAFCRECKEAY 354 (446)
T ss_pred CchhHhHHHHHhhh
Confidence 39999999999855
No 492
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=20.08 E-value=55 Score=29.77 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=15.9
Q ss_pred CceEc---cCcccchHHHHHHHHh
Q 001690 272 DPVAI---VCGHSFERKAIQEHFQ 292 (1028)
Q Consensus 272 dPv~~---~cght~c~~ci~~~~~ 292 (1028)
.||.+ .|| |.||.|+++|-.
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 68865 455 789999999975
Done!