BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001691
         (1028 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZPA|A Chain A, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
 pdb|2ZPA|B Chain B, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
          Length = 671

 Score = 96.3 bits (238), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 140/361 (38%), Gaps = 71/361 (19%)

Query: 279 VALLAARGRGKSXXXXXXXXXXXXXXYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHI 338
            A+ AARGRGKS                   VTAP+  +   L +F  + F  I     +
Sbjct: 195 AAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGEKFRFIAPDALL 250

Query: 339 DYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVR 398
             D                                      Q + LV+DEAAAIP P++ 
Sbjct: 251 ASD-------------------------------------EQADWLVVDEAAAIPAPLLH 273

Query: 399 SLLGPY-LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSE 457
            L+  +    L++TV GYEGTGR   LK   +                      + EL +
Sbjct: 274 QLVSRFPRTLLTTTVQGYEGTGRGFLLKFCARFPH-----------------LHRFELQQ 316

Query: 458 SIRYAPGDPIESWLNGLLCLDVMNSIPHINSECDLYYVNRDTLFSYHKESELFLQRMMAL 517
            IR+A G P+E  ++  L  D  N   H      +      TL+    E+ L   ++  L
Sbjct: 317 PIRWAQGCPLEKXVSEALVFDDEN-FTHTPQGNIVISAFEQTLWQSDPETPL---KVYQL 372

Query: 518 YVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLK 577
              +HY+ SP DL+   DAP  H     G     +N++   L ++    EG +S++    
Sbjct: 373 LSGAHYRTSPLDLRRXXDAPGQHFLQAAG-----ENEIAGALWLVD---EGGLSQQLSQA 424

Query: 578 SFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYY 637
            ++   +P G+ +    +    + +  +L G R+ RIA HP+  R G G   +    +Y 
Sbjct: 425 VWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAGALQYT 484

Query: 638 E 638
           +
Sbjct: 485 Q 485



 Score = 38.1 bits (87), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 693 EKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESD 752
           + L+Y+ VSFG T +L+RFW++  F       +  A +G +T   L P      ++ E +
Sbjct: 485 QDLDYLSVSFGYTGELWRFWQRCGFVLVRXGNHREASSGCYTAXALLPXSDAGKQLAERE 544


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,933,299
Number of Sequences: 62578
Number of extensions: 1183630
Number of successful extensions: 2488
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2481
Number of HSP's gapped (non-prelim): 4
length of query: 1028
length of database: 14,973,337
effective HSP length: 109
effective length of query: 919
effective length of database: 8,152,335
effective search space: 7491995865
effective search space used: 7491995865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)