Query 001691
Match_columns 1028
No_of_seqs 293 out of 688
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 15:51:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001691.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_990-994//hhsearch_pdb/001691hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zpa_A Uncharacterized protein 1.0 1 1 1150.4 60.2 642 7-904 5-652 (671)
2 3e1s_A Exodeoxyribonuclease V, 1.0 1 1 73.9 14.3 169 252-475 187-359 (574)
3 3upu_A ATP-dependent DNA helic 1.0 1 1 73.7 15.4 182 254-476 25-212 (459)
4 1w36_D RECD, exodeoxyribonucle 1.0 1 1 71.9 18.1 199 256-474 151-374 (608)
5 3kkw_A Putative uncharacterize 1.0 1 1 63.4 11.8 124 522-742 56-181 (182)
6 1q2y_A Protein YJCF, similar t 1.0 1 1 61.8 11.2 130 507-740 8-140 (140)
7 4e0a_A BH1408 protein; structu 1.0 1 1 61.5 13.4 122 523-733 38-161 (164)
8 3d2m_A Putative acetylglutamat 1.0 1 1 60.7 4.7 115 524-742 335-455 (456)
9 3fix_A N-acetyltransferase; te 1.0 1 1 60.4 10.2 107 526-740 70-182 (183)
10 1cjw_A Protein (serotonin N-ac 1.0 1 1 59.3 13.0 130 524-741 35-166 (166)
No 1
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=1150.44 Aligned_cols=642 Identities=23% Similarity=0.331 Sum_probs=547.7
Q ss_pred HHHHHHHHHHHHCCEEEEEEEEECCCHH--HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999986833806899999088224--69999999776220588809999508721113689999999998752889
Q 001691 7 ERIRTLIENGVKQRHRSMFVIIGDKSRD--QIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHKKKRQKQIKKLMQRGLL 84 (1028)
Q Consensus 7 ~ri~~Lien~v~~~~Rs~~vivGd~~~~--qv~~lh~~l~~~~~~~~psvLwcyk~~l~fss~~kkR~~~~kk~~~~g~~ 84 (1028)
.-+..+.+...+.+||+++|+.||..|- ++.. +.. . ..++++|.....
T Consensus 5 ~~l~~~~~~~~~~~~RrLlvl~G~~~w~~~~a~~---l~~-~---~~~~~~wv~~~~----------------------- 54 (671)
T 2zpa_A 5 TALHTLTAQMKREGIRRLLVLSGEEGWCFEHTLK---LRD-A---LPGDWLWISPRP----------------------- 54 (671)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCHHHHHHHHHH---HHH-H---SCSCCEEECCCC-----------------------
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHH---HHH-H---CCCCCEEECCCC-----------------------
T ss_conf 8999999999981971699997878999999999---987-3---578861645887-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCC
Q ss_conf 99978932111124776310012243220342144898057899977999985100129399998178760343202564
Q 001691 85 DPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVM 164 (1028)
Q Consensus 85 ~~~~~d~f~~F~~~~~Ir~~~Yket~kiLG~T~~mlVLqdfe~ltPN~LartieTV~GGGliiLLl~~~~sl~qlyt~~m 164 (1028)
...++|+|++++++|||||+|||+|+|++|+||+|||++|||+|||++|||+|+|++|+++ |
T Consensus 55 --------------~~~~~~~~~~~~~~LG~e~~~~v~d~~~~~~pn~la~~~gtv~gGG~lvll~p~~~~w~~~----~ 116 (671)
T 2zpa_A 55 --------------DAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWLVLLLPVWEEWENQ----P 116 (671)
T ss_dssp -------------------------CCTTTCCBSSEEEECSSCCCHHHHHHHHTTBCTTCEEEEEESCGGGTTTS----C
T ss_pred --------------CCCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHEECCEEEEEECCCHHHHHHC----C
T ss_conf --------------5566318889987647755889998689989899999952420364899985875650105----8
Q ss_pred CCCC-CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 4334-354467765312289999996622796899958987001588765444478987755741557647888752036
Q 001691 165 DVHE-RFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQLCD 243 (1028)
Q Consensus 165 d~h~-r~rt~~~~~v~~rFneRfi~sL~~~~~~lv~DdelnvlP~s~~~~~i~~~~~~~~~~~~~~~~~~l~~lk~~l~~ 243 (1028)
|+|+ ||....++.+++|||+||+++|.+|++|+++|++ +.+|++ +.+... +
T Consensus 117 d~~~~r~~~~~~~~~~~~F~~rf~~~l~~~~~~~~~~~~-~~~~~~-------~~~~~~--------------------~ 168 (671)
T 2zpa_A 117 DADSLRWSDCPDPIATPHFVQHLKRVLTADNEAILWRQN-QPFSLA-------HFTPRT--------------------D 168 (671)
T ss_dssp BGGGHHHHCCSSCBCCHHHHHHHHHHHTSSSSSEEEETT-SCCCCC-------CCCCCC--------------------C
T ss_pred CHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC-CCCCCC-------CCCCCC--------------------C
T ss_conf 805412455667766546999999999748980898189-875578-------877775--------------------4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
Q ss_conf 89987432368968899999999999740267727999908999888999999999999199819996699565999999
Q 001691 244 DFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFE 323 (1028)
Q Consensus 244 ~~p~~~L~~~~~T~DQa~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFe 323 (1028)
++ .+..|+|.||++|+.+|.+.. ..+.+|||+|||||||++|+++|.++ .+++||||+++|++++|+
T Consensus 169 ~~----~~~~~~T~dQ~~al~~~~~~~-----~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 169 WY----PATGAPQPEQQQLLKQLMTMP-----PGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp CC----CCCSSCCHHHHHHHHHHTTCC-----SEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHH
T ss_pred CC----CCCCCCCHHHHHHHHHHHHHH-----HCEEEEECCCCCCHHHHHHHHHHHHH----HCCEEECCCHHHHHHHHH
T ss_conf 45----777898999999999999753-----07289845899988999999999997----392897899899999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCC-CCCCCCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 9984000111122443100025899988662787543136417997189622-246896489995356999889998543
Q 001691 324 FVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEH-EKLAQVELLVIDEAAAIPLPVVRSLLG 402 (1028)
Q Consensus 324 f~~kgl~aLgy~e~~dy~ii~s~~p~~~~aivri~i~~~hrq~Iqyi~Pd~~-~~l~~adLlvIDEAAAIPlpll~~ll~ 402 (1028)
|+.+ +|+|++||++ ....++|+||||||||||+|+|++|++
T Consensus 236 ~~~~--------------------------------------~i~~~~Pd~~~~~~~~~dlliVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 236 FAGE--------------------------------------KFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp HHGG--------------------------------------GCCBCCHHHHHHSCCCCSEEEEETGGGSCHHHHHHHHT
T ss_pred HHHC--------------------------------------CEEEECCHHHHHCCCCCCEEEEECHHCCCHHHHHHHHH
T ss_conf 8617--------------------------------------73884754666174668889998542399999999985
Q ss_pred CC-EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 98-39997213488778863028999996420799977767875576403999334223489990799898722677778
Q 001691 403 PY-LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMN 481 (1028)
Q Consensus 403 ~y-~VflsSTI~GYEGTGRgfsLKl~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRYa~gDPvE~WL~~lLlLDa~~ 481 (1028)
+| +|||||||||||||||||+|||+++|+ .+++++|+|||||++|||||+|||++||||+++
T Consensus 278 ~~~~v~~~tTv~GYEGtGrgf~lk~~~~L~-----------------~~~~~~L~~piR~a~~DplE~wl~~~llld~~~ 340 (671)
T 2zpa_A 278 RFPRTLLTTTVQGYEGTGRGFLLKFCARFP-----------------HLHRFELQQPIRWAQGCPLEKMVSEALVFDDEN 340 (671)
T ss_dssp TSSEEEEEEEBSSTTBBCHHHHHHHHHTST-----------------TCEEEECCSCSSSCTTCHHHHHHHHHHTCCCGG
T ss_pred HCCEEEEEECCCCCCCCCCCCCCCCHHHCC-----------------CCCEEECCCCEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 477589971377677757641401685669-----------------776798157666289997899998864767877
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEE
Q ss_conf 88888886517873632101347573999999999988254799955998853399972899845776567878992899
Q 001691 482 SIPHINSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCV 561 (1028)
Q Consensus 482 ~~~~~~~~c~l~~Vnrd~Lfs~h~~sE~~Lqqi~~LlV~AHYkNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~v 561 (1028)
+....++.|++++|||++||+ +|.+|+++|+|||+|||||+||||++|+|+|+|++||+.. + ++|+|+
T Consensus 341 ~~~~~~~~~~~~~~~~~~l~~----~e~~L~~~~~Ll~~aHYr~sp~dL~~llD~p~~~l~va~~-----~---g~IVG~ 408 (671)
T 2zpa_A 341 FTHTPQGNIVISAFEQTLWQS----DPETPLKVYQLLSGAHYRTSPLDLRRMMDAPGQHFLQAAG-----E---NEIAGA 408 (671)
T ss_dssp GGSCCCSCCEEEEEETTHHHH----CTHHHHHHHHHHHHHSSSBCHHHHHHHHHCTTEEEEEEEC-----S---SSEEEE
T ss_pred CCCCCCCCCEEEEECHHHHHC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEE-----C---CEEEEE
T ss_conf 788998761599976898612----9999999999997455689989999972699855999998-----9---928999
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99631279997889979824999998820088986222787898762089998638662148958999999999971125
Q 001691 562 IQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQL 641 (1028)
Q Consensus 562 iqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~l~~q~~d~~f~~Lsg~RIVRIAvhP~~q~~GyGs~aL~~L~~y~~g~~ 641 (1028)
++++.||+++++++.+++.+++||+||||||++++|+++++|++++++||+||||||+|||+|||+++|+.++++
T Consensus 409 i~v~~eG~l~~~~~~~~~~g~rRp~G~lip~~l~~~~~~~e~~~~~~~~I~~IAV~P~~rg~GiG~~LL~~~e~~----- 483 (671)
T 2zpa_A 409 LWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAGALQY----- 483 (671)
T ss_dssp EEEEEEECCCHHHHHHHHHTSCCCSSCHHHHHHHHHSSCTTGGGSEEEEEEEEEECTTSCSSSHHHHHHHHHHHT-----
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHCCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHH-----
T ss_conf 999976886888999987146677776104789876254112156736999999988882898999999999998-----
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 54443454455577511313677531000002567888882000000128778653897248898689999979983787
Q 001691 642 TTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFY 721 (1028)
Q Consensus 642 ~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~~~~lDylGvSFG~T~~Ll~FWkk~gF~pVy 721 (1028)
..+++|++++||.|..+++||+|+||.+++
T Consensus 484 --------------------------------------------------a~~~~~l~v~~~~n~~ai~FYek~GF~~v~ 513 (671)
T 2zpa_A 484 --------------------------------------------------TQDLDYLSVSFGYTGELWRFWQRCGFVLVR 513 (671)
T ss_dssp --------------------------------------------------CCSCSEEEEEEECCHHHHHHHHHTTCEEEE
T ss_pred --------------------------------------------------HHCCCEEEEEECCCHHHHHHHHHCCCEEEE
T ss_conf --------------------------------------------------710887899826889999999987998986
Q ss_pred EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 54145678896158997138864312345540006999999999999965410358999999999852895567778977
Q 001691 722 VSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPR 801 (1028)
Q Consensus 722 lrq~~n~~TGEhS~IMlk~L~~~~~~~~~~~~~~wl~~~~~dF~~rf~~lL~~~~fr~l~~~lal~lL~~~~~~~~~~~~ 801 (1028)
+++.+|..+|||+++|+|+|++ .+..+++.+.+.|++++..+. . +.-+...
T Consensus 514 ig~~~~~~~Ge~a~iM~k~L~~--------~g~~l~d~~~~~f~r~~~~l~-~-----------~~~~~~~--------- 564 (671)
T 2zpa_A 514 MGNHREASSGCYTAMALLPMSD--------AGKQLAEREHYRLRRDAQALA-Q-----------WNGETLP--------- 564 (671)
T ss_dssp ECSSCCTTTCCCEEEEEEECSH--------HHHHHHHHHHHHHHHHHHHHH-H-----------HHTSCCS---------
T ss_pred EEECCCCCCCCEEEEEEEEHHH--------HHHHHHHHHHHHHHHHHHHHH-H-----------CCCCCCC---------
T ss_conf 3102335799620544331215--------489999999999997656544-2-----------0423345---------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 88982111123789999999999997427654122111299999998401378874489899999999409999999999
Q 001691 802 QDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQ 881 (1028)
Q Consensus 802 ~~~~~l~~~~~~~~ls~~Dl~rL~~ya~~~~dy~~i~Dllp~La~lyf~~~~~~~Ls~~q~~iLla~~LQ~ks~~~i~~e 881 (1028)
+. ...+..+++.|+++|..|+.|..+|+.+. +.|.+++....+ +..+|+++++|+++|++++.+
T Consensus 565 -----~~-~~~~~~l~~~d~~~L~~fa~g~r~~e~~~---~al~rl~~~~~~-------~~~~L~~~~~Q~~~~~~~~~~ 628 (671)
T 2zpa_A 565 -----VD-PLNDAVLSDDDWLELAGFAFAHRPLLTSL---GCLLRLLQTSEL-------ALPALRGRLQKNASDAQLCTT 628 (671)
T ss_dssp -----SC-CCCCCCCCHHHHHHHHHHHHSCCCTTTTH---HHHHHHHHHCCS-------CCHHHHHHHHSCCCHHHHHHH
T ss_pred -----CC-CCCCCCCCHHHHHHHHHHHCCCCCHHHHH---HHHHHHHHHCCC-------HHHHHHHHHHCCCCHHHHHHH
T ss_conf -----56-66756899999999999973896889999---999999996665-------279999999769999999999
Q ss_pred HCCCH-HHHHHHHHHHHHHHHHHH
Q ss_conf 19988-899999999999999999
Q 001691 882 MKLEA-DRIFVLFRKVMTKLTDYL 904 (1028)
Q Consensus 882 l~l~~-~q~~a~l~k~i~kl~~~~ 904 (1028)
++++| ++++..+|.+++.+...+
T Consensus 629 l~~~g~k~~~~~lR~~~~~~l~~~ 652 (671)
T 2zpa_A 629 LKLSGRKMLLVRQREEAAQALFAL 652 (671)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 588749999999999999999841
No 2
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=1.00 E-value=1 Score=73.92 Aligned_cols=169 Identities=24% Similarity=0.271 Sum_probs=113.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 36896889999999999974026772799990899988899999999999919981999669956599999999840001
Q 001691 252 KKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNA 331 (1028)
Q Consensus 252 ~~~~T~DQa~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~a 331 (1028)
....+.+|..|+..+. . ...++||++-|.|||..+.-.+..+...|+ +|+++||+..+++.+-+-.. .++
T Consensus 187 ~~~L~~~Q~~Av~~~~----~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~-~Vl~~ApT~~Aa~~L~e~~~--~~a 256 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----G---HRLVVLTGGPGTGKSTTTKAVADLAESLGL-EVGLCAPTGKAARRLGEVTG--RTA 256 (574)
T ss_dssp TTTCCHHHHHHHHHHT----T---CSEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHHT--SCE
T ss_pred CCCCCHHHHHHHHHHH----H---CCEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHC--CCH
T ss_conf 3799999999999997----6---887999959999889999999999985698-29996485899997676636--309
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCC---C-EEE
Q ss_conf 111224431000258999886627875431364179971896222468964899953569998899985439---8-399
Q 001691 332 IEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGP---Y-LVF 407 (1028)
Q Consensus 332 Lgy~e~~dy~ii~s~~p~~~~aivri~i~~~hrq~Iqyi~Pd~~~~l~~adLlvIDEAAAIPlpll~~ll~~---y-~Vf 407 (1028)
.-......+ .. . .|. .+ ......+|++|||||.+++.+++..|+.. . .++
T Consensus 257 ~Tih~ll~~--------------------~~--~--~~~-~~-~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 257 STVHRLLGY--------------------GP--Q--GFR-HN-HLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEHHHHTTE--------------------ET--T--EES-CS-SSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEE
T ss_pred HHHHHHHCC--------------------CC--C--HHH-HH-HCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 899998767--------------------92--0--323-20-1035658889971756778999999998376898899
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHC
Q ss_conf 97213488778863028999996420799977767875576403999334223489990799898722
Q 001691 408 LSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLL 475 (1028)
Q Consensus 408 lsSTI~GYEGTGRgfsLKl~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRYa~gDPvE~WL~~lL 475 (1028)
+....+----.|.|-.++.+.. . +..+.|++..|.+.+.++-.+.+.+.
T Consensus 311 lvGD~~QL~~v~~g~~~~~l~~---~----------------~~~~~L~~~~R~~~~s~I~~~a~~i~ 359 (574)
T 3e1s_A 311 LVGDTDQLPPVDAGLPLLALAQ---A----------------APTIKLTQVYRQAAKNPIIQAAHGLL 359 (574)
T ss_dssp EEECTTSCCCSSSCCHHHHHHH---H----------------SCEEECCCCCHHHHTCHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCHHHHHHH---C----------------CCEEECCEEEECCCCCHHHHHHHHHH
T ss_conf 9954332687668837999996---3----------------98898520181899618999999986
No 3
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=1.00 E-value=1 Score=73.68 Aligned_cols=182 Identities=20% Similarity=0.211 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 89688999999999997402677279999089998889999999999991998199966995659999999984000111
Q 001691 254 CSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIE 333 (1028)
Q Consensus 254 ~~T~DQa~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ai~~g~~nI~VTAPs~enl~tlFef~~kgl~aLg 333 (1028)
.+|.+|.+|+..+...+..+ +.+++|+|+.|.|||.++...++.+...|+.+|+++||+..+++.+-+.+......+
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~--~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~- 101 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEK--KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTI- 101 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEH-
T ss_pred CCCHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCHHHH-
T ss_conf 48999999999999987368--977999969999899999999999986499609996675789998876616541559-
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHC----CCEEEEE
Q ss_conf 122443100025899988662787543136417997189622246896489995356999889998543----9839997
Q 001691 334 YKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLG----PYLVFLS 409 (1028)
Q Consensus 334 y~e~~dy~ii~s~~p~~~~aivri~i~~~hrq~Iqyi~Pd~~~~l~~adLlvIDEAAAIPlpll~~ll~----~y~Vfls 409 (1028)
|.-..+ ... .......|... +...+...+++|||||..++..++..|+. ...+++.
T Consensus 102 ---h~~~~~-------------~~~---~~~~~~~~~~~-~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~v 161 (459)
T 3upu_A 102 ---HSILKI-------------NPV---TYEENVLFEQK-EVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGI 161 (459)
T ss_dssp ---HHHHTE-------------EEE---ECSSCEEEEEC-SCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEE
T ss_pred ---HHHHCC-------------CCC---CCCCCCHHCCC-CCCCCCCCCEEEEECCHHCCHHHHHHHHHHCCCCCEEEEE
T ss_conf ---988546-------------855---45530020003-3333467889999880118999999999845689889998
Q ss_pred ECCCC--CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCC
Q ss_conf 21348--87788630289999964207999777678755764039993342234899907998987226
Q 001691 410 STVNG--YEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLC 476 (1028)
Q Consensus 410 STI~G--YEGTGRgfsLKl~~~L~~~~~~~~~~~~~~~~~~~~~ei~L~ePIRYa~gDPvE~WL~~lLl 476 (1028)
...+- |-+.|..+. .+..+-. ...+..++|++-.|. +.++=.+.+.+.-
T Consensus 162 GD~~Ql~~v~~g~~~~--~l~~~~~--------------~~~~~~~~L~~~~R~--~~~I~~~a~~lr~ 212 (459)
T 3upu_A 162 GDNKQIRPVDPGENTA--YISPFFT--------------HKDFYQCELTEVKRS--NAPIIDVATDVRN 212 (459)
T ss_dssp ECTTSCCCCCTTSCSC--CCCGGGT--------------CTTEEEEECCCCCCC--CCHHHHHHHHHHT
T ss_pred CCHHHCCCCCCCCCHH--HHHHHHH--------------CCCCCEEECEEEEEC--CCHHHHHHHHHHC
T ss_conf 8778768866886247--6779985--------------689728755046408--9579999999975
No 4
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=1.00 E-value=1 Score=71.88 Aligned_cols=199 Identities=19% Similarity=0.224 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC--C-CCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 688999999999997402677279999089998889999999999991--9-9819996699565999999998400011
Q 001691 256 TLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAA--G-YSNIFVTAPSPENLKTLFEFVCKGFNAI 332 (1028)
Q Consensus 256 T~DQa~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~ai~~--g-~~nI~VTAPs~enl~tlFef~~kgl~aL 332 (1028)
+..|..|+..+. . ++.++++++-|-|||..+.-.++.+... + ..+|+++||+.+++..+-+-+......+
T Consensus 151 ~~~Q~~Ai~~~l----~---~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVAL----T---RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHH----T---BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHH----C---CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 999999999996----2---998999949999789999999999998630579759999187368999999999887507
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCC----CEEEE
Q ss_conf 11224431000258999886627875431364179971896222468964899953569998899985439----83999
Q 001691 333 EYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGP----YLVFL 408 (1028)
Q Consensus 333 gy~e~~dy~ii~s~~p~~~~aivri~i~~~hrq~Iqyi~Pd~~~~l~~adLlvIDEAAAIPlpll~~ll~~----y~Vfl 408 (1028)
+........ -|.....+.+..........+.+.. ......|++|||||.++..+++..|+.. -.++|
T Consensus 224 ~l~~~~~~~-----~~~~~~Tih~ll~~~~~~~~~~~~~----~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 224 PLTDEQKKR-----IPEDASTLHRLLGAQPGSQRLRHHA----GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp SCCSCCCCS-----CSCCCBTTTSCC-----------CT----TSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHC-----CCHHHHHHHHHHCCCCCCHHHHHCC----CCCCCCCEEEEECHHHCCHHHHHHHHHHCCCCCEEEE
T ss_conf 877888732-----4055550575520589816777526----8987799999945250899999999984888988999
Q ss_pred EECCC--CCCCCCC-----------CHHHHHHHHHHHCCCCCCCCCCCCCCCCCE-----EEEEECCCCCCCCCCCHHHH
Q ss_conf 72134--8877886-----------302899999642079997776787557640-----39993342234899907998
Q 001691 409 SSTVN--GYEGTGR-----------SLSLKLLHQLEQQSHMPAKGVEGSAHGCLF-----KKIELSESIRYAPGDPIESW 470 (1028)
Q Consensus 409 sSTI~--GYEGTGR-----------gfsLKl~~~L~~~~~~~~~~~~~~~~~~~~-----~ei~L~ePIRYa~gDPvE~W 470 (1028)
....+ .+=|.|. |++-.++++|.+....... ......| ..+.|++..|...+.++-.+
T Consensus 295 vGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~l 370 (608)
T 1w36_D 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP----AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 (608)
T ss_dssp EECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCC----CCSTTTTHHHHTTEEECCCCCCSSCCTTHHHH
T ss_pred ECCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCEEECCEEEEECCCCHHHHH
T ss_conf 76604458878980799999877536667889999873175434----32112355444627762254520784359999
Q ss_pred HHHH
Q ss_conf 9872
Q 001691 471 LNGL 474 (1028)
Q Consensus 471 L~~l 474 (1028)
.+.+
T Consensus 371 a~~i 374 (608)
T 1w36_D 371 AAAI 374 (608)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
No 5
>3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family, structural genomics, PSI, protein structure initiative; 1.41A {Pseudomonas aeruginosa PAO1}
Probab=1.00 E-value=1 Score=63.43 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 47999559988533999728998457765678789928999963127999788997982499999882008898622278
Q 001691 522 HYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDA 601 (1028)
Q Consensus 522 HYkNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~l~~q~~d~ 601 (1028)
.+.-++.++...++.+. ..|++.. + ++++|.+.+...
T Consensus 56 ~~~~~~~~~~~~~~~~~-~~~v~~~-----~---g~ivG~~~~~~~---------------------------------- 92 (182)
T 3kkw_A 56 IWPFSVAQLAAAIAERR-GSTVAVH-----D---GQVLGFANFYQW---------------------------------- 92 (182)
T ss_dssp CSSCCHHHHHHHHHHSE-EEEEEEE-----T---TEEEEEEEEEEE----------------------------------
T ss_pred CCCCCHHHHHHHHCCCC-CEEEEEE-----C---CEEEEEEEEEEE----------------------------------
T ss_conf 78889999998735886-3799986-----9---949999999860----------------------------------
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78987620899986386621489589999999999711255444345445557751131367753100000256788888
Q 001691 602 VFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLP 681 (1028)
Q Consensus 602 ~f~~Lsg~RIVRIAvhP~~q~~GyGs~aL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p 681 (1028)
..-..+.|..++|+|+||++|||+++++.+.++.......
T Consensus 93 --~~~~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~~~~-------------------------------------- 132 (182)
T 3kkw_A 93 --QHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKA-------------------------------------- 132 (182)
T ss_dssp --ETTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHHHCC--------------------------------------
T ss_pred --CCCCEEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHCCCC--------------------------------------
T ss_conf --6885599998999988808998999999999999745792--------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC--EEEEECCCC
Q ss_conf 2000000128778653897248898689999979983787541456788961--589971388
Q 001691 682 PLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH--TCMVLKPLH 742 (1028)
Q Consensus 682 ~ll~~l~e~~~~~lDylGvSFG~T~~Ll~FWkk~gF~pVylrq~~n~~TGEh--S~IMlk~L~ 742 (1028)
..=++.| +..+....+||+|+||.++....... ..|+. .++|-|.|+
T Consensus 133 ------------~~i~l~v-~~~N~~a~~~y~k~GF~~~~~~~~~~-~~g~~~~~~~m~k~L~ 181 (182)
T 3kkw_A 133 ------------RLMKISC-FNANAAGLLLYTQLGYQPRAIAERHD-PDGRRVALIQMDKPLE 181 (182)
T ss_dssp ------------SEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred ------------CEEEEEE-ECCCHHHHHHHHHCCCEEECCCCCCC-CCCCEEEEEEEEECCC
T ss_conf ------------1999999-66999999999987990865256646-6883875799860368
No 6
>1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related N-acetyltransferase superfamily fold, NYSGXRC, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: d.108.1.1
Probab=1.00 E-value=1 Score=61.78 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHCCCCC---CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 3999999999988254799---9559988533999728998457765678789928999963127999788997982499
Q 001691 507 SELFLQRMMALYVSSHYKN---SPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGH 583 (1028)
Q Consensus 507 sE~~Lqqi~~LlV~AHYkN---sPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~ 583 (1028)
++.-+.+++.|+..+.... ++.+.....+ +....|++.. + ++++|.+.+...+
T Consensus 8 ~~~d~~~i~~l~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~---~~~vG~~~~~~~~--------------- 63 (140)
T 1q2y_A 8 NEEQLKDAFYVREEVFVKEQNVPAEEEIDELE-NESEHIVVYD-----G---EKPVGAGRWRMKD--------------- 63 (140)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCCCTTTTCCTTG-GGSEEEEEEE-----T---TEEEEEEEEEEET---------------
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CCCEEEEEEE-----C---CEEEEEEEEEECC---------------
T ss_conf 92779999999999842336998377776436-8837999998-----9---9689999999759---------------
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99988200889862227878987620899986386621489589999999999711255444345445557751131367
Q 001691 584 QPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEA 663 (1028)
Q Consensus 584 Rp~GdLIPw~l~~q~~d~~f~~Lsg~RIVRIAvhP~~q~~GyGs~aL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~ 663 (1028)
..+.|.+++|+|++|++|+|+++++.+.++......
T Consensus 64 -----------------------~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~g~--------------------- 99 (140)
T 1q2y_A 64 -----------------------GYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGA--------------------- 99 (140)
T ss_dssp -----------------------TEEEEEEEECCGGGTTTTHHHHHHHHHHHHHHHTTC---------------------
T ss_pred -----------------------CCEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHCCC---------------------
T ss_conf -----------------------809999999938884469899999999999997799---------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 75310000025678888820000001287786538972488986899999799837875414567889615899713
Q 001691 664 AKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKP 740 (1028)
Q Consensus 664 ~~~~~l~~~~i~~~~~~p~ll~~l~e~~~~~lDylGvSFG~T~~Ll~FWkk~gF~pVylrq~~n~~TGEhS~IMlk~ 740 (1028)
..=++.+ +....+||+|+||.++.-+ .. ...|...++|.|+
T Consensus 100 ------------------------------~~i~l~~----n~~~~~~y~~~Gf~~~~~~-~~-~~~g~~~~~m~k~ 140 (140)
T 1q2y_A 100 ------------------------------SGFILNA----QTQAVPFYKKHGYRVLSEK-EF-LDAGIPHLQMMKD 140 (140)
T ss_dssp ------------------------------CSEEEEE----EGGGHHHHHHTTCEESCSC-CE-ESSSSEEEEEEEC
T ss_pred ------------------------------CEEEEEE----CHHHHHHHHHCCCEEECCC-CC-CCCCCCCEEEECC
T ss_conf ------------------------------4999990----3788889997798995223-53-3479632147529
No 7
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=1.00 E-value=1 Score=61.47 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 79995599885339997289984577656787899289999631279997889979824999998820088986222787
Q 001691 523 YKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAV 602 (1028)
Q Consensus 523 YkNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~l~~q~~d~~ 602 (1028)
..-+...+...++.+...+|++.. ++ ++++|.+.+.....-... .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~v~~~-----~~--g~~vG~~~~~~~~~~~~~----------------------------~ 82 (164)
T 4e0a_A 38 PTLNPSRFQAAVQGEKSTVLVFVD-----ER--EKIGAYSVIHLVQTPLLP----------------------------T 82 (164)
T ss_dssp SSSCHHHHHHHHHCSSEEEEEEEE-----ET--TEEEEEEEEEEEEECCCS----------------------------S
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC-----CC--CCEEEEEEEEECCCCCCC----------------------------C
T ss_conf 077899999871599528999997-----99--958999999923787776----------------------------2
Q ss_pred CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89876208999863866214895899999999997112554443454455577511313677531000002567888882
Q 001691 603 FPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPP 682 (1028)
Q Consensus 603 f~~Lsg~RIVRIAvhP~~q~~GyGs~aL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ 682 (1028)
...-..+.|..|+|+|+||++|||+++++.+.+++...
T Consensus 83 ~~~~~~~~i~~~~V~p~~rg~Gig~~ll~~~~~~~~~~------------------------------------------ 120 (164)
T 4e0a_A 83 MQQRKTVYISDLCVDETRRGGGIGRLIFEAIISYGKAH------------------------------------------ 120 (164)
T ss_dssp BCCEEEEEEEEEEECGGGCSSSHHHHHHHHHHHHHHHT------------------------------------------
T ss_pred CCCCCEEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHC------------------------------------------
T ss_conf 13785799997999778705886999999999999976------------------------------------------
Q ss_pred CCCCCCCCCCCCCC--EEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 00000012877865--3897248898689999979983787541456788961
Q 001691 683 LLVHLRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEH 733 (1028)
Q Consensus 683 ll~~l~e~~~~~lD--ylGvSFG~T~~Ll~FWkk~gF~pVylrq~~n~~TGEh 733 (1028)
+++ ++.| +.-+....+||+|+||.++......+...+.+
T Consensus 121 -----------g~~~i~l~~-~~~n~~a~~~y~k~GF~~~~~~~~~~~~~~~~ 161 (164)
T 4e0a_A 121 -----------QVDAIELDV-YDFNDRAKAFYHSLGMRCQKQTMELPLLEHHH 161 (164)
T ss_dssp -----------TCSEEEEEE-ETTCHHHHHHHHHTTCEEEEEEEEEECC----
T ss_pred -----------CCCEEEEEE-ECCCHHHHHHHHHCCCEEECEECCCCCCCCCC
T ss_conf -----------999899999-73898999999986998901063687643233
No 8
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=1.00 E-value=1 Score=60.69 Aligned_cols=115 Identities=13% Similarity=0.179 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 99955998853399972899845776567878992899996312799978899798249999988200889862227878
Q 001691 524 KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVF 603 (1028)
Q Consensus 524 kNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~l~~q~~d~~f 603 (1028)
.-++.++....+ ++|+... + ++++|++.+.... +
T Consensus 335 ~~~~~~~~~~l~----~~~va~~-----~---g~iVG~~~~~~~~-------------------------------~--- 368 (456)
T 3d2m_A 335 HRSREYLENHIS----EFSILEH-----D---GNLYGCAALKTFA-------------------------------E--- 368 (456)
T ss_dssp CCCHHHHHHHGG----GEEEEEE-----T---TEEEEEEEEEECS-------------------------------S---
T ss_pred CCCHHHHHHHHH----HEEEEEE-----C---CEEEEEEEEEECC-------------------------------C---
T ss_conf 579999999874----2899998-----9---9799999999618-------------------------------9---
Q ss_pred CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 98762089998638662148958999999999971125544434544555775113136775310000025678888820
Q 001691 604 PSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPL 683 (1028)
Q Consensus 604 ~~Lsg~RIVRIAvhP~~q~~GyGs~aL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~l 683 (1028)
-..+.|-+++|+|+||++|||+++++.+.++....
T Consensus 369 --~~~~~I~~l~V~p~~rg~GiG~~Ll~~~~~~a~~~------------------------------------------- 403 (456)
T 3d2m_A 369 --ADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGI------------------------------------------- 403 (456)
T ss_dssp --TTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred --CCEEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHC-------------------------------------------
T ss_conf --99799999999888859999999999999999985-------------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEE------CCCCCCCCCEEEEECCCC
Q ss_conf 00000128778653897248898689999979983787541------456788961589971388
Q 001691 684 LVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQ------NANAVTGEHTCMVLKPLH 742 (1028)
Q Consensus 684 l~~l~e~~~~~lDylGvSFG~T~~Ll~FWkk~gF~pVylrq------~~n~~TGEhS~IMlk~L~ 742 (1028)
++..+-.. |....+||+|+||.++.... ......|..+.+|.|+|.
T Consensus 404 ----------g~~~i~l~---N~~a~~fY~k~GF~~~~~~~~p~~~~~~y~~~~r~~~v~~k~L~ 455 (456)
T 3d2m_A 404 ----------GISRLFAL---STNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLH 455 (456)
T ss_dssp ----------TCCEEEEE---ESSCHHHHHTTTCEEECGGGSCHHHHHHHHHHCCCCEEEEEECC
T ss_pred ----------CCCEEEEE---CHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCCEEEEEEECC
T ss_conf ----------99899997---68999999988999937034877777642666677089998767
No 9
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Probab=1.00 E-value=1 Score=60.43 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=73.1
Q ss_pred CHHHHHHHHCCCCCE----EEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 955998853399972----8998457765678789928999963127999788997982499999882008898622278
Q 001691 526 SPNDLQLMADAPAHH----LFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDA 601 (1028)
Q Consensus 526 sPnDLqlLlDaP~h~----lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIPw~l~~q~~d~ 601 (1028)
++..+....+.|... .|++.. + ++++|.+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~~~---------------------------------- 107 (183)
T 3fix_A 70 SKEKLLNEIVRSQSNLDILFLGAFA-----D---STLIGFIELKII---------------------------------- 107 (183)
T ss_dssp CHHHHHHHHHHHHTTSSEEEEEEEE-----T---TEEEEEEEEEEE----------------------------------
T ss_pred CHHHHHHHHCCCCCCCCCEEEEEEE-----C---CEEEEEEEEEEC----------------------------------
T ss_conf 8699999870556566610899995-----9---989999998967----------------------------------
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78987620899986386621489589999999999711255444345445557751131367753100000256788888
Q 001691 602 VFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLP 681 (1028)
Q Consensus 602 ~f~~Lsg~RIVRIAvhP~~q~~GyGs~aL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p 681 (1028)
-..+.|..|+|+|+|||+|||+++++.+.+++....
T Consensus 108 ----~~~~~i~~l~V~p~~rg~Gig~~Ll~~~~~~a~~~g---------------------------------------- 143 (183)
T 3fix_A 108 ----ANKAELLRLYLKPEYTHKKIGKTLLLEAEKIMKKKG---------------------------------------- 143 (183)
T ss_dssp ----TTEEEEEEEEECGGGCCHHHHHHHHHHHHHHHHHHT----------------------------------------
T ss_pred ----CCCEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHCC----------------------------------------
T ss_conf ----995699999988888589879999999999999759----------------------------------------
Q ss_pred CCCCCCCCCCCCCCC--EEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 200000012877865--38972488986899999799837875414567889615899713
Q 001691 682 PLLVHLRERQPEKLN--YIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKP 740 (1028)
Q Consensus 682 ~ll~~l~e~~~~~lD--ylGvSFG~T~~Ll~FWkk~gF~pVylrq~~n~~TGEhS~IMlk~ 740 (1028)
+. ++.| ..-+....+||+|+||.++.-. +...+|-|.
T Consensus 144 -------------~~~i~l~v-~~~n~~a~~~y~k~GF~~~~~~--------~~~~~m~k~ 182 (183)
T 3fix_A 144 -------------ILECRLYV-HRQNSVGFSFYYKNGFKVEDTD--------GSDFIMEKK 182 (183)
T ss_dssp -------------CCEEEEEE-ETTCHHHHHHHHHTTCEEEEEC--------SSEEEEEEE
T ss_pred -------------CCEEEEEE-ECCCHHHHHHHHHCCCEEECCC--------CCCHHHCCC
T ss_conf -------------96699998-0687889999998599991654--------533222056
No 10
>1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB: 1b6b_A
Probab=1.00 E-value=1 Score=59.31 Aligned_cols=130 Identities=15% Similarity=0.077 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECC--CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 999559988533999728998457765678789928999963127--999788997982499999882008898622278
Q 001691 524 KNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEG--QISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDA 601 (1028)
Q Consensus 524 kNsPnDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG--~is~~~i~~~l~~G~Rp~GdLIPw~l~~q~~d~ 601 (1028)
..++.++....+.+....|++.. + ++++|.+.+.... .+.... .. .
T Consensus 35 ~~~~~~~~~~~~~~~~~~~v~~~-----~---~~ivG~~~~~~~~~~~~~~~~-------------------~~-----~ 82 (166)
T 1cjw_A 35 PLNLDEVQHFLTLCPELSLGWFV-----E---GRLVAFIIGSLWDEERLTQES-------------------LA-----L 82 (166)
T ss_dssp SCCHHHHHHHHHHCGGGEEEEEE-----T---TEEEEEEEEEEECSSSCCGGG-------------------GG-----C
T ss_pred CCCHHHHHHHHHCCCCCEEEEEE-----C---CEEEEEEEEEEECCCCCCCCC-------------------CC-----C
T ss_conf 64899999998628984799988-----9---958999996110134225543-------------------33-----4
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78987620899986386621489589999999999711255444345445557751131367753100000256788888
Q 001691 602 VFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLP 681 (1028)
Q Consensus 602 ~f~~Lsg~RIVRIAvhP~~q~~GyGs~aL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p 681 (1028)
....-..+.|..|+|+|+||++|||+++++.+.++....
T Consensus 83 ~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~~~~~~----------------------------------------- 121 (166)
T 1cjw_A 83 HRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQ----------------------------------------- 121 (166)
T ss_dssp CCTTCCEEEEEEEEECTTSTTSSHHHHHHHHHHHHHHTS-----------------------------------------
T ss_pred CCCCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHH-----------------------------------------
T ss_conf 567899439999898776545886999999999999984-----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf 200000012877865389724889868999997998378754145678896158997138
Q 001691 682 PLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPL 741 (1028)
Q Consensus 682 ~ll~~l~e~~~~~lDylGvSFG~T~~Ll~FWkk~gF~pVylrq~~n~~TGEhS~IMlk~L 741 (1028)
.++..+-. ..+....+||+|+||.++... .....|..-..|.++|
T Consensus 122 -----------~g~~~i~l--~~n~~a~~~y~k~GF~~~~~~--~~~~~g~~~~~m~~~l 166 (166)
T 1cjw_A 122 -----------PAVRRAVL--MCEDALVPFYQRFGFHPAGPC--AIVVGSLTFTEMHCSL 166 (166)
T ss_dssp -----------TTCCEEEE--EECGGGHHHHHTTTEEEEEEC--SCCBTTBCCEEEEEEC
T ss_pred -----------CCCCEEEE--ECCCHHHHHHHHCCCEECCCC--CEECCCCCHHHHCCCC
T ss_conf -----------19546999--648538899997698477865--3144882145443169
Done!